Citrus Sinensis ID: 014890
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 416 | 2.2.26 [Sep-21-2011] | |||||||
| P12858 | 405 | Glyceraldehyde-3-phosphat | N/A | no | 0.968 | 0.995 | 0.851 | 0.0 | |
| P19866 | 401 | Glyceraldehyde-3-phosphat | N/A | no | 0.963 | 1.0 | 0.814 | 0.0 | |
| P09043 | 392 | Glyceraldehyde-3-phosphat | N/A | no | 0.939 | 0.997 | 0.847 | 0.0 | |
| P25856 | 396 | Glyceraldehyde-3-phosphat | yes | no | 0.947 | 0.994 | 0.834 | 0.0 | |
| P09315 | 403 | Glyceraldehyde-3-phosphat | N/A | no | 0.963 | 0.995 | 0.815 | 1e-179 | |
| P12860 | 451 | Glyceraldehyde-3-phosphat | N/A | no | 0.906 | 0.835 | 0.725 | 1e-151 | |
| P25857 | 447 | Glyceraldehyde-3-phosphat | no | no | 0.906 | 0.843 | 0.718 | 1e-150 | |
| P09044 | 438 | Glyceraldehyde-3-phosphat | N/A | no | 0.913 | 0.867 | 0.736 | 1e-149 | |
| P12859 | 451 | Glyceraldehyde-3-phosphat | N/A | no | 0.913 | 0.842 | 0.716 | 1e-147 | |
| P50362 | 374 | Glyceraldehyde-3-phosphat | N/A | no | 0.836 | 0.930 | 0.737 | 1e-143 |
| >sp|P12858|G3PA_PEA Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/418 (85%), Positives = 377/418 (90%), Gaps = 15/418 (3%)
Query: 1 MASATLSVAKSALQGNGKGFSEFSGLRNSA-SLPFGRKSSDDFHSVIALQTSALGSSSSG 59
MASAT SVAK A++ NGKGFSEFSGLRNS+ LPF RKSSDDFHS++ QT+A+GSS
Sbjct: 1 MASATFSVAKPAIKANGKGFSEFSGLRNSSRHLPFSRKSSDDFHSLVTFQTNAVGSSGGH 60
Query: 60 YRKVAAQAK-LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDST 118
+ + +AK LKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDST
Sbjct: 61 KKSLVVEAKQLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDST 120
Query: 119 LGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKH 178
LGIF+ADVKPVGTDGISVDGKVI+VVS+RNP NLPW +LGIDLVIEGTGVFVDREGAG+H
Sbjct: 121 LGIFDADVKPVGTDGISVDGKVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGRH 180
Query: 179 IQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVT 238
I AGAKKVLITAPGKGDIPTYVVGVNADAY + IISNASCTTNCLAPFVKVLDQKF
Sbjct: 181 ITAGAKKVLITAPGKGDIPTYVVGVNADAYTHADDIISNASCTTNCLAPFVKVLDQKF-- 238
Query: 239 QLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 298
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA
Sbjct: 239 -----------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 287
Query: 299 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCD 358
LVLP LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVN AFRESA EL GILSVCD
Sbjct: 288 LVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNEAFRESAAKELTGILSVCD 347
Query: 359 EPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
EPLVSVDFRC+DVSSTVDSSLT+VMGDD+VKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct: 348 EPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVANNWK 405
|
Pisum sativum (taxid: 3888) EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 3 |
| >sp|P19866|G3PA_SPIOL Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/416 (81%), Positives = 362/416 (87%), Gaps = 15/416 (3%)
Query: 1 MASATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGY 60
MAS LS+A +L+ KGFSEFSGL S SLPFGRK SDD + ++ QT+A+G S
Sbjct: 1 MASNMLSIANPSLRVYNKGFSEFSGLHTS-SLPFGRKGSDDLMAFVSFQTNAVGGKRSSQ 59
Query: 61 RKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLG 120
V +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV INDTGGVKQASHLLKYDS LG
Sbjct: 60 NGVV-EAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILG 118
Query: 121 IFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQ 180
F+ADVK G ISVDGKVI+VVS+RNPVNLPWGD+GIDLVIEGTGVFVDR+GAGKH+Q
Sbjct: 119 TFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQ 178
Query: 181 AGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQL 240
AGAKKVLITAPGKGDIPTYVVGVN + Y + IISNASCTTNCLAPFVKVLDQKF
Sbjct: 179 AGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKF---- 234
Query: 241 NDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALV 300
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAA LNIVPTSTGAAKAVALV
Sbjct: 235 ---------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALV 285
Query: 301 LPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEP 360
LP LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEP
Sbjct: 286 LPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEP 345
Query: 361 LVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
LVS+DFRC+DVSST+DSSLT+VMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct: 346 LVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 401
|
Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|P09043|G3PA_TOBAC Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/406 (84%), Positives = 366/406 (90%), Gaps = 15/406 (3%)
Query: 11 SALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLK 70
S+LQ + KGFSEFSGLR S+++PFGRK++DD SV+A QTS +G +S ++ +AKLK
Sbjct: 2 SSLQVSNKGFSEFSGLRTSSAIPFGRKTNDDLLSVVAFQTSVIGGGNS--KRGVVEAKLK 59
Query: 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVG 130
VAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDSTLGIF+ADVKPVG
Sbjct: 60 VAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVG 119
Query: 131 TDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190
TDGISVDGKVIQVVS+RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA
Sbjct: 120 TDGISVDGKVIQVVSDRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 179
Query: 191 PGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAG 250
PGKGDIPTYVVGVNAD Y PDEPIISNASCTTNCLAPFVKVLDQKF G
Sbjct: 180 PGKGDIPTYVVGVNADLYNPDEPIISNASCTTNCLAPFVKVLDQKF-------------G 226
Query: 251 IIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNG 310
IIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL AL+G
Sbjct: 227 IIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALSSQALRGSSMA 286
Query: 311 IALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSD 370
+ LRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRE+AD ELKGIL VCDEPLVSVDFRCSD
Sbjct: 287 LPLRVPTPNVSVVDLVVQVSKKTFAEEVNAAFREAADKELKGILDVCDEPLVSVDFRCSD 346
Query: 371 VSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
VSSTVD+SLT+VMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN WK
Sbjct: 347 VSSTVDASLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK 392
|
Nicotiana tabacum (taxid: 4097) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|P25856|G3PA_ARATH Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3 | Back alignment and function description |
|---|
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/418 (83%), Positives = 372/418 (88%), Gaps = 24/418 (5%)
Query: 1 MASATLSVAKSALQGNGKGFSEFSGLRNS-ASLPFGRK-SSDDFHSVIALQTSALGSSSS 58
MAS T SV K GF+EFSGLR+S ASLPFG+K SSD+F S+++ QTSA+GSS
Sbjct: 1 MASVTFSVPK--------GFTEFSGLRSSSASLPFGKKLSSDEFVSIVSFQTSAMGSSG- 51
Query: 59 GYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDST 118
GYRK +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+++AINDTGGVKQASHLLKYDST
Sbjct: 52 GYRKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDST 111
Query: 119 LGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKH 178
LGIF+ADVKP G ISVDGK+IQVVSNRNP LPW +LGID+VIEGTGVFVDREGAGKH
Sbjct: 112 LGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKH 171
Query: 179 IQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVT 238
I+AGAKKV+ITAPGKGDIPTYVVGVNADAY DEPIISNASCTTNCLAPFVKVLDQKF
Sbjct: 172 IEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKF-- 229
Query: 239 QLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 298
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA
Sbjct: 230 -----------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 278
Query: 299 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCD 358
LVLP LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFR+SA+ ELKGIL VCD
Sbjct: 279 LVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCD 338
Query: 359 EPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
EPLVSVDFRCSD S+T+DSSLT+VMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct: 339 EPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 396
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|P09315|G3PA_MAIZE Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 629 bits (1621), Expect = e-179, Method: Compositional matrix adjust.
Identities = 341/418 (81%), Positives = 365/418 (87%), Gaps = 17/418 (4%)
Query: 1 MASATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRK-SSDDFHSVIALQTSALGSSSSG 59
MAS+ LS LQ G G SEFSGLR+SASLP R +SDDF S ++ +T A+G+S G
Sbjct: 1 MASSMLSATTVPLQ-QGGGLSEFSGLRSSASLPMRRNATSDDFMSAVSFRTHAVGTSG-G 58
Query: 60 YRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAINDTGGVKQASHLLKYDST 118
R+ +AKLKVAINGFGRIGRNFLRCWHGR D SPL+V+AINDTGGVKQASHLLKYDST
Sbjct: 59 PRRAPTEAKLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTGGVKQASHLLKYDST 118
Query: 119 LGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKH 178
LGIF+ADVKPVG + ISVDGKVI+VVS+RNP NLPWG+LGIDLVIEGTGVFVDREGAGKH
Sbjct: 119 LGIFDADVKPVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDREGAGKH 178
Query: 179 IQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVT 238
IQAGAKKVLITAPGKGDIPTYVVGVNAD Y PDEPIISNASCTTNCLAPFVKVLDQKF
Sbjct: 179 IQAGAKKVLITAPGKGDIPTYVVGVNADQYNPDEPIISNASCTTNCLAPFVKVLDQKF-- 236
Query: 239 QLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 298
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV+
Sbjct: 237 -----------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVS 285
Query: 299 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCD 358
LVLP LKGKLNGIALRVPTPNVSVVDLVVQVSKKT AEEVN AFR++A NEL GIL VCD
Sbjct: 286 LVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTLAEEVNQAFRDAAANELTGILEVCD 345
Query: 359 EPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
PLVSVDFRCSDVSST+D+SLT+VMGDDMVKVI+WYDNEWGYSQRVVDLADI AN WK
Sbjct: 346 VPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQRVVDLADICANQWK 403
|
Zea mays (taxid: 4577) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 535 bits (1378), Expect = e-151, Method: Compositional matrix adjust.
Identities = 290/400 (72%), Positives = 326/400 (81%), Gaps = 23/400 (5%)
Query: 21 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQ--AKLKVAINGFGR 78
++FSGLR+S S+ F R++S FH VIA Q L + +G V + AKLKVAINGFGR
Sbjct: 40 ADFSGLRSSNSVTFTREAS--FHDVIAAQ---LTTKPTGAAPVRGETVAKLKVAINGFGR 94
Query: 79 IGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG 138
IGRNFLRCWHGRKDSPL+VV +ND+GGVK A+HLLKYDS LG F+ADVK + + S+DG
Sbjct: 95 IGRNFLRCWHGRKDSPLDVVVVNDSGGVKSATHLLKYDSILGTFKADVKIIDNETFSIDG 154
Query: 139 KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIP 197
K I+VVSNR+P+ LPW +LGID+VIEGTGVFVD GAGKHIQAGAKKV+ITAP KG DIP
Sbjct: 155 KPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGSDIP 214
Query: 198 TYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTM 256
TYVVGVN Y D IISNASCTTNCLAPFVKVLD++ GI+KGTM
Sbjct: 215 TYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEEL-------------GIVKGTM 261
Query: 257 TTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVP 316
TTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV+LVLP LKGKLNGIALRVP
Sbjct: 262 TTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVP 321
Query: 317 TPNVSVVDLVVQVSK-KTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTV 375
TPNVSVVDLVV + K AE+VN AFR++A LKG+L VCD PLVSVDFRCSD SST+
Sbjct: 322 TPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTI 381
Query: 376 DSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415
DSSLT+VMG DMVKV+AWYDNEWGYSQRVVDLAD+VAN W
Sbjct: 382 DSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDLADLVANKW 421
|
Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2 | Back alignment and function description |
|---|
Score = 531 bits (1367), Expect = e-150, Method: Compositional matrix adjust.
Identities = 286/398 (71%), Positives = 323/398 (81%), Gaps = 21/398 (5%)
Query: 21 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIG 80
+EFSGLR S+ G ++S F +A Q ++S + AKLKVAINGFGRIG
Sbjct: 39 AEFSGLRMSS---IGGEAS--FFDAVAAQIIPKAVTTSTPVRGETVAKLKVAINGFGRIG 93
Query: 81 RNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKV 140
RNFLRCWHGRKDSPLEVV +ND+GGVK ASHLLKYDS LG F+A+VK V + ISVDGK+
Sbjct: 94 RNFLRCWHGRKDSPLEVVVLNDSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKL 153
Query: 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTY 199
I+VVSNR+P+ LPW +LGID+VIEGTGVFVD GAGKHIQAGA KV+ITAP KG DIPTY
Sbjct: 154 IKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGASKVIITAPAKGADIPTY 213
Query: 200 VVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTT 258
V+GVN Y D IISNASCTTNCLAPF KVLD++F GI+KGTMTT
Sbjct: 214 VMGVNEQDYGHDVANIISNASCTTNCLAPFAKVLDEEF-------------GIVKGTMTT 260
Query: 259 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTP 318
THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV+LVLP LKGKLNGIALRVPTP
Sbjct: 261 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTP 320
Query: 319 NVSVVDLVVQVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDS 377
NVSVVDLV+ V KK AE+VN AFR++A+ +KGIL VCD PLVSVDFRCSDVS+T+DS
Sbjct: 321 NVSVVDLVINVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDS 380
Query: 378 SLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415
SLT+VMGDDMVKV+AWYDNEWGYSQRVVDLA +VA+ W
Sbjct: 381 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKW 418
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|P09044|G3PB_TOBAC Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 528 bits (1360), Expect = e-149, Method: Compositional matrix adjust.
Identities = 293/398 (73%), Positives = 330/398 (82%), Gaps = 18/398 (4%)
Query: 21 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIG 80
+EF+GLR+S + F K S F V++ Q + + S+ K AKLKVAINGFGRIG
Sbjct: 9 AEFAGLRSSGCVTFSNKESS-FFDVVSAQLTPKTTRSTPV-KGETVAKLKVAINGFGRIG 66
Query: 81 RNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKV 140
RNFLRCWHGRKDSPL+VV +ND+GGVK ASHLLKYDS LG F+ADVK V + ISVDGK
Sbjct: 67 RNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKH 126
Query: 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTY 199
I+VVS+R+P+ LPW +LGID+VIEGTGVFVD GAGKHIQAGAKKV+ITAP KG DIPTY
Sbjct: 127 IKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTY 186
Query: 200 VVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTT 258
VVGVN Y + IISNASCTTNCLAPFVKV+D++ GI+KGTMTT
Sbjct: 187 VVGVNEQDYSHEVADIISNASCTTNCLAPFVKVMDEEL-------------GIVKGTMTT 233
Query: 259 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTP 318
THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV+LVLP LKGKLNGIALRVPTP
Sbjct: 234 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTP 293
Query: 319 NVSVVDLVVQVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDS 377
NVSVVDLVV V+KK AE+VNAAFR++AD LKG+L+VCDEPLVSVDFRCSDVSST+DS
Sbjct: 294 NVSVVDLVVNVAKKGITAEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDS 353
Query: 378 SLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415
SLT+VMGDDMVKV+AWYDNEWGYSQRVVDLA +VANNW
Sbjct: 354 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANNW 391
|
Nicotiana tabacum (taxid: 4097) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2 | Back alignment and function description |
|---|
Score = 521 bits (1343), Expect = e-147, Method: Compositional matrix adjust.
Identities = 285/398 (71%), Positives = 330/398 (82%), Gaps = 18/398 (4%)
Query: 22 EFSGLRNSASLPFGRKSSDD-FHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIG 80
EFSGL++++ + + + D F+ V+A Q ++ + S+ + V AKLKVAINGFGRIG
Sbjct: 39 EFSGLKSTSCISYVHSARDSSFYDVVAAQLTSKANGSTAVKGVTV-AKLKVAINGFGRIG 97
Query: 81 RNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKV 140
RNFLRCWHGRKDSPLEV+ +ND+GGVK ASHLLKYDS LG F+A+VK + + I+VDGK
Sbjct: 98 RNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKAEVKILNNETITVDGKP 157
Query: 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTY 199
I+VVS+R+P+ LPW +LGID+VIEGTGVFVD GAGKHIQAGAKKV+ITAP KG DIPTY
Sbjct: 158 IKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTY 217
Query: 200 VVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTT 258
V+GVN Y + IISNASCTTNCLAPF KVLD++F GI+KGTMTT
Sbjct: 218 VIGVNEQDYGHEVADIISNASCTTNCLAPFAKVLDEEF-------------GIVKGTMTT 264
Query: 259 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTP 318
THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV+LVLP LKGKLNGIALRVPTP
Sbjct: 265 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTP 324
Query: 319 NVSVVDLVVQVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDS 377
NVSVVDLVV V+KK AE+VNAAFR++A+ LKGIL VCD PLVSVDFRCSDVS+T+DS
Sbjct: 325 NVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDS 384
Query: 378 SLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415
SLT+VMGDDMVKV+AWYDNEWGYSQRVVDLA +VAN W
Sbjct: 385 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKW 422
|
Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|P50362|G3PA_CHLRE Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 508 bits (1309), Expect = e-143, Method: Compositional matrix adjust.
Identities = 273/370 (73%), Positives = 312/370 (84%), Gaps = 22/370 (5%)
Query: 55 SSSSGYRKVAAQA--------KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGV 106
SS SG R AA+A K++VAINGFGRIGRNFLRCWHGR+++ L+VVAIND+GGV
Sbjct: 16 SSKSGVRAKAARAVVDVRAEKKIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSGGV 75
Query: 107 KQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGT 166
KQASHLLKYDSTLG F ADVK V ISVDGK I++VS+R+P+ LPW ++ IDLVIEGT
Sbjct: 76 KQASHLLKYDSTLGTFAADVKIVDDSHISVDGKQIKIVSSRDPLQLPWKEMNIDLVIEGT 135
Query: 167 GVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVNADAYKPDEPIISNASCTTNCL 225
GVF+D+ GAGKHIQAGA KVLITAP K DIPT+VVGVN YK + PIISNASCTTNCL
Sbjct: 136 GVFIDKVGAGKHIQAGASKVLITAPAKDKDIPTFVVGVNEGDYKHEYPIISNASCTTNCL 195
Query: 226 APFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALN 285
APFVKVL+QKF GI+KGTMTTTHSYTGDQRLLDASHRDLRRARAAALN
Sbjct: 196 APFVKVLEQKF-------------GIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALN 242
Query: 286 IVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES 345
IVPT+TGAAKAV+LVLP+LKGKLNGIALRVPTP VSVVDLVVQV KKTFAEEVNAAFRE+
Sbjct: 243 IVPTTTGAAKAVSLVLPSLKGKLNGIALRVPTPTVSVVDLVVQVEKKTFAEEVNAAFREA 302
Query: 346 ADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVV 405
A+ +KG+L V D PLVS+DF+C+D S+++D+SLT+VMGDDMVKV+AWYDNEWGYSQRVV
Sbjct: 303 ANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDMVKVVAWYDNEWGYSQRVV 362
Query: 406 DLADIVANNW 415
DLA++ A W
Sbjct: 363 DLAEVTAKKW 372
|
Chlamydomonas reinhardtii (taxid: 3055) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 416 | ||||||
| 255543455 | 404 | glyceraldehyde 3-phosphate dehydrogenase | 0.968 | 0.997 | 0.889 | 0.0 | |
| 334813895 | 405 | glyceraldehyde-3-phosphate dehydrogenase | 0.966 | 0.992 | 0.885 | 0.0 | |
| 356561064 | 403 | PREDICTED: glyceraldehyde-3-phosphate de | 0.966 | 0.997 | 0.875 | 0.0 | |
| 351721288 | 403 | glyceraldehyde-3-phosphate dehydrogenase | 0.966 | 0.997 | 0.872 | 0.0 | |
| 255641471 | 403 | unknown [Glycine max] | 0.966 | 0.997 | 0.872 | 0.0 | |
| 251831338 | 405 | glyceraldehyde-3-phosphate dehydrogenase | 0.968 | 0.995 | 0.861 | 0.0 | |
| 323650481 | 401 | glyceraldehyde-3-phosphate dehydrogenase | 0.963 | 1.0 | 0.887 | 0.0 | |
| 379131258 | 403 | Glyceraldehyde-3-phosphate dehydrogenase | 0.966 | 0.997 | 0.858 | 0.0 | |
| 357508529 | 404 | Glyceraldehyde-3-phosphate dehydrogenase | 0.968 | 0.997 | 0.858 | 0.0 | |
| 381393060 | 403 | glyceraldehyde-3-phosphate dehydrogenase | 0.966 | 0.997 | 0.856 | 0.0 |
| >gi|255543455|ref|XP_002512790.1| glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis] gi|223547801|gb|EEF49293.1| glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/417 (88%), Positives = 386/417 (92%), Gaps = 14/417 (3%)
Query: 1 MASATLSVAKSALQGNGKGFSEFSGLRNSAS-LPFGRKSSDDFHSVIALQTSALGSSSSG 59
MASAT SVAK +LQGNGKGF EFSGLRNS++ LPF +K+SDDF SV+A QTSA+GSS+ G
Sbjct: 1 MASATFSVAKPSLQGNGKGFQEFSGLRNSSAFLPFSKKTSDDFLSVVAFQTSAVGSSNGG 60
Query: 60 YRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTL 119
YRK A+AKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDSTL
Sbjct: 61 YRKTVAEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTL 120
Query: 120 GIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHI 179
GIF+ADVKPVGTDGISVDGKVIQVVS+RNP NLPW DLGIDLVIEGTGVFVDREGAGKHI
Sbjct: 121 GIFDADVKPVGTDGISVDGKVIQVVSDRNPANLPWKDLGIDLVIEGTGVFVDREGAGKHI 180
Query: 180 QAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQ 239
QAGAKKVLITAPGKGDIPTYVVGVNAD Y DEPIISNASCTTNCLAPFVKVLDQKF
Sbjct: 181 QAGAKKVLITAPGKGDIPTYVVGVNADGYSADEPIISNASCTTNCLAPFVKVLDQKF--- 237
Query: 240 LNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 299
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL
Sbjct: 238 ----------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 287
Query: 300 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDE 359
VLP LKGKLNGIALRVPTPNVSVVDLVVQV KKTFAEEVNAAFRESAD ELKGILSVCDE
Sbjct: 288 VLPTLKGKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEVNAAFRESADKELKGILSVCDE 347
Query: 360 PLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
PLVSVDFRC+DVSSTVDSSLT+VMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct: 348 PLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 404
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334813895|gb|AEH04452.1| glyceraldehyde-3-phosphate dehydrogenase [Arachis hypogaea] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/419 (88%), Positives = 387/419 (92%), Gaps = 17/419 (4%)
Query: 1 MASATLSVAKSALQGNG-KGFSEFSGLRNSAS--LPFGRKSSDDFHSVIALQTSALGSSS 57
MASATLSVAK ALQGNG KGFSEFSGLRNS+S LPF RK+SDDFHS+I+ QTSA+GSS
Sbjct: 1 MASATLSVAKPALQGNGGKGFSEFSGLRNSSSSYLPFSRKTSDDFHSIISFQTSAVGSSG 60
Query: 58 SGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDS 117
GYRK +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDS
Sbjct: 61 -GYRKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDS 119
Query: 118 TLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGK 177
TLGIF+ADVKPVG D ISVDGKVI+VVSNRNP NLPW +LG+DLVIEGTGVFVDREGAGK
Sbjct: 120 TLGIFDADVKPVGEDAISVDGKVIKVVSNRNPANLPWKELGVDLVIEGTGVFVDREGAGK 179
Query: 178 HIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFV 237
HIQAGAKKVLITAPGKGDIPTYVVGVNADAY PDEPIISNASCTTNCLAPFVKVLDQKF
Sbjct: 180 HIQAGAKKVLITAPGKGDIPTYVVGVNADAYSPDEPIISNASCTTNCLAPFVKVLDQKF- 238
Query: 238 TQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 297
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV
Sbjct: 239 ------------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 286
Query: 298 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 357
ALVLP LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA+ EL GILSVC
Sbjct: 287 ALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAEKELNGILSVC 346
Query: 358 DEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
DEPLVSVDFRC+DVSSTVDSSLT+VMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN+WK
Sbjct: 347 DEPLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANSWK 405
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356561064|ref|XP_003548805.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/417 (87%), Positives = 380/417 (91%), Gaps = 15/417 (3%)
Query: 1 MASATLSVAKSALQGNGKGFSEFSGLRNSAS-LPFGRKSSDDFHSVIALQTSALGSSSSG 59
MASATLSVAK ALQ NGKGFSEFSGLR+S+ LPF RKSS+DFHSVIA QT A+GSS G
Sbjct: 1 MASATLSVAKPALQANGKGFSEFSGLRSSSGFLPFSRKSSEDFHSVIAFQTYAVGSSG-G 59
Query: 60 YRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTL 119
Y+K +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDS L
Sbjct: 60 YKKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSIL 119
Query: 120 GIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHI 179
G F+ADVKPVG+D ISVDGK I+VVS+RNP NLPW DLGIDLVIEGTGVFVDREGAGKHI
Sbjct: 120 GTFDADVKPVGSDIISVDGKEIKVVSDRNPANLPWKDLGIDLVIEGTGVFVDREGAGKHI 179
Query: 180 QAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQ 239
QAGAKKVLITAPGKGDIPTYVVGVN Y PDEPIISNASCTTNCLAPFVKVLDQKF
Sbjct: 180 QAGAKKVLITAPGKGDIPTYVVGVNEYDYSPDEPIISNASCTTNCLAPFVKVLDQKF--- 236
Query: 240 LNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 299
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL
Sbjct: 237 ----------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 286
Query: 300 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDE 359
VLP LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNEL+GILSVCDE
Sbjct: 287 VLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELQGILSVCDE 346
Query: 360 PLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
PLVSVDFRC+DVSSTVDSSLT+VMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN WK
Sbjct: 347 PLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWK 403
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351721288|ref|NP_001238484.1| glyceraldehyde-3-phosphate dehydrogenase A subunit [Glycine max] gi|77540210|gb|ABA86963.1| glyceraldehyde-3-phosphate dehydrogenase A subunit [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/417 (87%), Positives = 379/417 (90%), Gaps = 15/417 (3%)
Query: 1 MASATLSVAKSALQGNGKGFSEFSGLRNSAS-LPFGRKSSDDFHSVIALQTSALGSSSSG 59
MASAT SVAK ALQ NGKGFSEFSGLR+S+ LPF RKSS+DFHSVIA QT A+GSS G
Sbjct: 1 MASATFSVAKPALQANGKGFSEFSGLRSSSGFLPFSRKSSEDFHSVIAFQTYAVGSSG-G 59
Query: 60 YRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTL 119
Y+K +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDS L
Sbjct: 60 YKKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSIL 119
Query: 120 GIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHI 179
G F+ADVKPVG++ ISVDGK I+VVS+RNP NLPW DLGIDLVIEGTGVFVDREGAGKHI
Sbjct: 120 GTFDADVKPVGSNVISVDGKEIKVVSDRNPANLPWKDLGIDLVIEGTGVFVDREGAGKHI 179
Query: 180 QAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQ 239
QAGAKKVLITAPGKGDIPTYVVGVN Y PDEPIISNASCTTNCLAPFVKVLDQKF
Sbjct: 180 QAGAKKVLITAPGKGDIPTYVVGVNEYDYSPDEPIISNASCTTNCLAPFVKVLDQKF--- 236
Query: 240 LNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 299
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL
Sbjct: 237 ----------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 286
Query: 300 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDE 359
VLP LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDE
Sbjct: 287 VLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDE 346
Query: 360 PLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
PLVSVDFRC+DVSSTVDSSLT+VMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN WK
Sbjct: 347 PLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWK 403
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255641471|gb|ACU21011.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/417 (87%), Positives = 379/417 (90%), Gaps = 15/417 (3%)
Query: 1 MASATLSVAKSALQGNGKGFSEFSGLRNSAS-LPFGRKSSDDFHSVIALQTSALGSSSSG 59
MASATLSVAK ALQ NGKGFSEFSGLR+S+ LPF RKSS+DFHSVIA QT A+GSS G
Sbjct: 1 MASATLSVAKPALQANGKGFSEFSGLRSSSGFLPFSRKSSEDFHSVIAFQTYAVGSSG-G 59
Query: 60 YRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTL 119
Y+K +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDS L
Sbjct: 60 YKKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSIL 119
Query: 120 GIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHI 179
G F+ADVKPVG++ ISVDGK I+VVS+RNP NLPW DLGIDLVIEGTGVFVDREGAGKHI
Sbjct: 120 GTFDADVKPVGSNVISVDGKEIKVVSDRNPANLPWKDLGIDLVIEGTGVFVDREGAGKHI 179
Query: 180 QAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQ 239
QAGAKKVLITAPGKGDIPTYVVGVN Y PDEPIISNASCTTNCLAPFVKVLDQKF
Sbjct: 180 QAGAKKVLITAPGKGDIPTYVVGVNEYDYSPDEPIISNASCTTNCLAPFVKVLDQKF--- 236
Query: 240 LNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 299
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL
Sbjct: 237 ----------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 286
Query: 300 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDE 359
VLP LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDE
Sbjct: 287 VLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDE 346
Query: 360 PLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
PLVSVDFRC+DVSSTVDSSLT+VMGDDMVKVIAWYDNEWGYSQR VDLADIVAN WK
Sbjct: 347 PLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRAVDLADIVANKWK 403
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|251831338|gb|ACT21568.1| glyceraldehyde-3-phosphate dehydrogenase [Bruguiera gymnorhiza] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/418 (86%), Positives = 378/418 (90%), Gaps = 15/418 (3%)
Query: 1 MASATLSVAK-SALQGNGKGFSEFSGLRNSAS-LPFGRKSSDDFHSVIALQTSALGSSSS 58
MASATLSVAK S LQ NGKGF+EFSGLRNS++ LPF +K+SDDF SV+A QTSAL SSS
Sbjct: 1 MASATLSVAKPSHLQANGKGFTEFSGLRNSSAFLPFAKKTSDDFLSVVAFQTSALASSSG 60
Query: 59 GYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDST 118
GYR+ AA+AKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDST
Sbjct: 61 GYRRAAAEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDST 120
Query: 119 LGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKH 178
LGIFEADVKP G ISVDGK+I+V SNRNPVNLPW ++ IDLVIEGTGVFVDREGAGKH
Sbjct: 121 LGIFEADVKPAGDSAISVDGKIIKVASNRNPVNLPWKEMEIDLVIEGTGVFVDREGAGKH 180
Query: 179 IQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVT 238
I AGAK VLITAPGKGDIPTYVVGVNADAY PDEPIISNASCTTNCLAPFVKVLDQK
Sbjct: 181 IHAGAKNVLITAPGKGDIPTYVVGVNADAYNPDEPIISNASCTTNCLAPFVKVLDQK--- 237
Query: 239 QLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 298
+GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAK VA
Sbjct: 238 ----------SGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKPVA 287
Query: 299 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCD 358
LVLP L+GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD ELKGILSVCD
Sbjct: 288 LVLPTLRGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADKELKGILSVCD 347
Query: 359 EPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
EPLVSVDFRC DVSSTVDSSLT+VMGDDMVKVIAWYDNEWGY QRVVDLAD+VA WK
Sbjct: 348 EPLVSVDFRCRDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYFQRVVDLADVVAEKWK 405
|
Source: Bruguiera gymnorhiza Species: Bruguiera gymnorhiza Genus: Bruguiera Family: Rhizophoraceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|323650481|gb|ADX97321.1| glyceraldehyde-3-phosphate dehydrogenase [Mangifera indica] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/416 (88%), Positives = 389/416 (93%), Gaps = 15/416 (3%)
Query: 1 MASATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGY 60
MASAT SVAK +LQ NGKGF++FSGLRNSASLPF RK+S+DF SVIA QTSA+G+S GY
Sbjct: 1 MASATFSVAKPSLQANGKGFTDFSGLRNSASLPFSRKTSEDFLSVIAFQTSAVGNS--GY 58
Query: 61 RKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLG 120
RK AA+AKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDSTLG
Sbjct: 59 RKGAAEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLG 118
Query: 121 IFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQ 180
IF+A+VKPVG + ISVDGKVI+VV+NRNP++LPWGDLG+DLVIEGTGVFVDR+GAGKHIQ
Sbjct: 119 IFDANVKPVGDNAISVDGKVIKVVTNRNPLDLPWGDLGVDLVIEGTGVFVDRDGAGKHIQ 178
Query: 181 AGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQL 240
AGAKKVLITAPGKGDIPTYVVGVNADAY PDEPIISNASCTTNCLAPFVKVLDQKF
Sbjct: 179 AGAKKVLITAPGKGDIPTYVVGVNADAYNPDEPIISNASCTTNCLAPFVKVLDQKF---- 234
Query: 241 NDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALV 300
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALV
Sbjct: 235 ---------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALV 285
Query: 301 LPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEP 360
LP+LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD ELKGILSVCDEP
Sbjct: 286 LPSLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADKELKGILSVCDEP 345
Query: 361 LVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
LVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN WK
Sbjct: 346 LVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWK 401
|
Source: Mangifera indica Species: Mangifera indica Genus: Mangifera Family: Anacardiaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|379131258|emb|CCF55355.1| Glyceraldehyde-3-phosphate dehydrogenase A [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/417 (85%), Positives = 381/417 (91%), Gaps = 15/417 (3%)
Query: 1 MASATLSVAKSALQGNGKGFSEFSGLRNSA-SLPFGRKSSDDFHSVIALQTSALGSSSSG 59
MA+ATLSVAK ++Q NGKGF+EFSGLRNS+ SL F R++SDDF SVIA QTSA+GSS G
Sbjct: 1 MATATLSVAKPSIQANGKGFAEFSGLRNSSTSLSFARRTSDDFLSVIAFQTSAVGSSG-G 59
Query: 60 YRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTL 119
Y+K +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDSTL
Sbjct: 60 YKKGIVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTL 119
Query: 120 GIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHI 179
GIFEADVKP G + ISVDGK+I+VVS+RNP+NLPW D+ IDLVIEGTGVFVDREGAGKHI
Sbjct: 120 GIFEADVKPAGDEAISVDGKIIKVVSSRNPLNLPWKDMEIDLVIEGTGVFVDREGAGKHI 179
Query: 180 QAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQ 239
+AGAKKVLITAPGKGDIPTYVVGVNADAY DE IISNASCTTNCLAPFVKVLDQKF
Sbjct: 180 EAGAKKVLITAPGKGDIPTYVVGVNADAYSHDESIISNASCTTNCLAPFVKVLDQKF--- 236
Query: 240 LNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 299
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL
Sbjct: 237 ----------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 286
Query: 300 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDE 359
VLP+LKGKLNGIALRVPTPN SVVDLVVQVSKKTFAEEVNAAFRESA+ EL GILSVCDE
Sbjct: 287 VLPSLKGKLNGIALRVPTPNASVVDLVVQVSKKTFAEEVNAAFRESAEKELNGILSVCDE 346
Query: 360 PLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
PLVSVDFRCSDVSSTVDSSLT+VMGDD+VKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct: 347 PLVSVDFRCSDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVANNWK 403
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357508529|ref|XP_003624553.1| Glyceraldehyde-3-phosphate dehydrogenase A [Medicago truncatula] gi|355499568|gb|AES80771.1| Glyceraldehyde-3-phosphate dehydrogenase A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/417 (85%), Positives = 378/417 (90%), Gaps = 14/417 (3%)
Query: 1 MASATLSVAKSALQGNGKGFSEFSGLRNSAS-LPFGRKSSDDFHSVIALQTSALGSSSSG 59
MASAT SVA AL+ NGKGFSEFSGLRNS+ LPF RK+SDDFHSVI+ QT+A+GSS
Sbjct: 1 MASATFSVANPALKVNGKGFSEFSGLRNSSGYLPFSRKTSDDFHSVISFQTNAVGSSGRS 60
Query: 60 YRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTL 119
+ V +AK+KVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDSTL
Sbjct: 61 KKGVVVEAKIKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTL 120
Query: 120 GIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHI 179
GIF+ADVKPVGTDGISVDGKVI+VVS+RNP NLPWG+LGIDLVIEGTGVFVDREGAGKHI
Sbjct: 121 GIFDADVKPVGTDGISVDGKVIKVVSDRNPANLPWGELGIDLVIEGTGVFVDREGAGKHI 180
Query: 180 QAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQ 239
AGAKKVLITAPGKGDIPTYVVGVNAD Y + IISNASCTTNCLAPFVKVLDQKF
Sbjct: 181 TAGAKKVLITAPGKGDIPTYVVGVNADGYSHADDIISNASCTTNCLAPFVKVLDQKF--- 237
Query: 240 LNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 299
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL
Sbjct: 238 ----------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 287
Query: 300 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDE 359
VLP+LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVN AFR+SA EL GILSVCDE
Sbjct: 288 VLPSLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNEAFRDSAAKELSGILSVCDE 347
Query: 360 PLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
PLVSVDFRC+DVSSTVDSSLT+VMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct: 348 PLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 404
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|381393060|gb|AFG28404.1| glyceraldehyde-3-phosphate dehydrogenase A [Pyrus x bretschneideri] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/417 (85%), Positives = 382/417 (91%), Gaps = 15/417 (3%)
Query: 1 MASATLSVAKSALQGNGKGFSEFSGLR-NSASLPFGRKSSDDFHSVIALQTSALGSSSSG 59
MASA LSVAK +LQ NGKGF+EFSGLR +SA LPFGRK+SDD SVIA QTSA+GS+ G
Sbjct: 1 MASAILSVAKPSLQANGKGFAEFSGLRTSSACLPFGRKTSDDLFSVIAFQTSAVGSNG-G 59
Query: 60 YRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTL 119
Y+K +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDSTL
Sbjct: 60 YKKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTL 119
Query: 120 GIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHI 179
GIF+ADVKPVG +G+SVDGK+I+VVS+RNP++LPW DL IDLVIEGTGVFVDREGAGKH+
Sbjct: 120 GIFDADVKPVGDNGLSVDGKIIKVVSSRNPIDLPWKDLEIDLVIEGTGVFVDREGAGKHL 179
Query: 180 QAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQ 239
AGAKKVLITAPGKGDIPTYVVGVNADAY PDE IISNASCTTNCLAPFVKVLDQKF
Sbjct: 180 LAGAKKVLITAPGKGDIPTYVVGVNADAYSPDETIISNASCTTNCLAPFVKVLDQKF--- 236
Query: 240 LNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 299
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL
Sbjct: 237 ----------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 286
Query: 300 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDE 359
VLP+LKGKLNGIALRVPTPNVSVVDLVVQV+KKTFAEEVNAAFR+SA+ EL GILSVCDE
Sbjct: 287 VLPSLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFRDSAEKELAGILSVCDE 346
Query: 360 PLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
LVSVDFRC+DVSSTVDSSLT+VMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct: 347 SLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 403
|
Source: Pyrus x bretschneideri Species: Pyrus x bretschneideri Genus: Pyrus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 416 | ||||||
| TAIR|locus:2090802 | 396 | GAPA "glyceraldehyde 3-phospha | 0.947 | 0.994 | 0.705 | 1.9e-147 | |
| TAIR|locus:2010361 | 399 | GAPA-2 "glyceraldehyde 3-phosp | 0.956 | 0.997 | 0.693 | 1.3e-146 | |
| TAIR|locus:2009864 | 447 | GAPB "glyceraldehyde-3-phospha | 0.906 | 0.843 | 0.587 | 5.9e-112 | |
| TIGR_CMR|CHY_0280 | 335 | CHY_0280 "glyceraldehyde-3-pho | 0.788 | 0.979 | 0.455 | 3.2e-72 | |
| UNIPROTKB|Q829W3 | 335 | gap2 "Glyceraldehyde-3-phospha | 0.793 | 0.985 | 0.424 | 3.8e-69 | |
| TIGR_CMR|GSU_1629 | 333 | GSU_1629 "glyceraldehyde 3-pho | 0.790 | 0.987 | 0.445 | 3.1e-67 | |
| TIGR_CMR|BA_4827 | 342 | BA_4827 "glyceraldehyde 3-phos | 0.788 | 0.959 | 0.434 | 8.2e-67 | |
| TIGR_CMR|BA_5369 | 334 | BA_5369 "glyceraldehyde 3-phos | 0.776 | 0.967 | 0.426 | 2.5e-65 | |
| TIGR_CMR|CBU_1783 | 334 | CBU_1783 "glyceraldehyde 3-pho | 0.776 | 0.967 | 0.412 | 3.3e-63 | |
| UNIPROTKB|P64178 | 339 | gap "Glyceraldehyde-3-phosphat | 0.798 | 0.979 | 0.42 | 4.2e-63 |
| TAIR|locus:2090802 GAPA "glyceraldehyde 3-phosphate dehydrogenase A subunit" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1440 (512.0 bits), Expect = 1.9e-147, P = 1.9e-147
Identities = 295/418 (70%), Positives = 315/418 (75%)
Query: 1 MASATLSVAKSALQGNGKGFSEFSGLRNS-ASLPFGRK-SSDDFHSVIALQTSALGSSSS 58
MAS T SV K GF+EFSGLR+S ASLPFG+K SSD+F S+++ QTSA+GSS
Sbjct: 1 MASVTFSVPK--------GFTEFSGLRSSSASLPFGKKLSSDEFVSIVSFQTSAMGSSG- 51
Query: 59 GYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDST 118
GYRK +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+++AINDTGGVKQASHLLKYDST
Sbjct: 52 GYRKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDST 111
Query: 119 LGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKH 178
LGIF+ADVKP G ISVDGK+IQVVSNRNP LPW +LGID+VIEGTGVFVDREGAGKH
Sbjct: 112 LGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKH 171
Query: 179 IQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVT 238
I+AGAKKV+ITAPGKGDIPTYVVGVNADAY DEPIISNASCTTNCLAPFVKVLDQKF
Sbjct: 172 IEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKF-- 229
Query: 239 QLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXX 298
GIIKGTMTTTHSYTGDQ NIVPTST
Sbjct: 230 -----------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 278
Query: 299 XXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCD 358
NGIALRVPTPN SKKTFAEEVNAAFR+SA+ ELKGIL VCD
Sbjct: 279 LVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCD 338
Query: 359 EPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
EPLVSVDFRC MGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct: 339 EPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 396
|
|
| TAIR|locus:2010361 GAPA-2 "glyceraldehyde 3-phosphate dehydrogenase A subunit 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1432 (509.1 bits), Expect = 1.3e-146, P = 1.3e-146
Identities = 289/417 (69%), Positives = 315/417 (75%)
Query: 1 MASATLSVAKSALQGNGKGFSEFSGLRNSASLPFG-RKSSDDFHSVIALQTSALGSSSSG 59
MASAT SVAK +LQG FSEFSGLRNS++LPF R SSD+F S ++ QTSA+ S+ G
Sbjct: 1 MASATFSVAKPSLQG----FSEFSGLRNSSALPFAKRSSSDEFVSFVSFQTSAM-RSNGG 55
Query: 60 YRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTL 119
YRK +AK+KVAINGFGRIGRNFLRCWHGRKDSPL+VV INDTGGVKQASHLLKYDSTL
Sbjct: 56 YRKGVTEAKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSTL 115
Query: 120 GIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHI 179
GIF+ADVKP G +SVDGK+I++VS+RNP NLPWG+LGIDLVIEGTGVFVDR+GAGKH+
Sbjct: 116 GIFDADVKPSGDSALSVDGKIIKIVSDRNPSNLPWGELGIDLVIEGTGVFVDRDGAGKHL 175
Query: 180 QAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQ 239
QAGAKKVLITAPGKGDIPTYVVGVNA+ Y ++ IISNASCTTNCLAPFVKVLDQKF
Sbjct: 176 QAGAKKVLITAPGKGDIPTYVVGVNAELYSHEDTIISNASCTTNCLAPFVKVLDQKF--- 232
Query: 240 LNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXX 299
GIIKGTMTTTHSYTGDQ NIVPTST
Sbjct: 233 ----------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 282
Query: 300 XXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDE 359
NGIALRVPTPN SKKTFAEEVNAAFR++A+ ELKGIL VCDE
Sbjct: 283 VLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDAAEKELKGILDVCDE 342
Query: 360 PLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
PLVSVDFRC MGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct: 343 PLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 399
|
|
| TAIR|locus:2009864 GAPB "glyceraldehyde-3-phosphate dehydrogenase B subunit" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
Identities = 234/398 (58%), Positives = 266/398 (66%)
Query: 21 SEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIG 80
+EFSGLR S+ G ++S F +A Q ++S + AKLKVAINGFGRIG
Sbjct: 39 AEFSGLRMSS---IGGEAS--FFDAVAAQIIPKAVTTSTPVRGETVAKLKVAINGFGRIG 93
Query: 81 RNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKV 140
RNFLRCWHGRKDSPLEVV +ND+GGVK ASHLLKYDS LG F+A+VK V + ISVDGK+
Sbjct: 94 RNFLRCWHGRKDSPLEVVVLNDSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKL 153
Query: 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTY 199
I+VVSNR+P+ LPW +LGID+VIEGTGVFVD GAGKHIQAGA KV+ITAP KG DIPTY
Sbjct: 154 IKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGASKVIITAPAKGADIPTY 213
Query: 200 VVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTT 258
V+GVN Y D IISNASCTTNCLAPF KVLD++F GI+KGTMTT
Sbjct: 214 VMGVNEQDYGHDVANIISNASCTTNCLAPFAKVLDEEF-------------GIVKGTMTT 260
Query: 259 THSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTP 318
THSYTGDQ NIVPTST NGIALRVPTP
Sbjct: 261 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTP 320
Query: 319 NXXXXXXXXXXSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXX 377
N KK AE+VN AFR++A+ +KGIL VCD PLVSVDFRC
Sbjct: 321 NVSVVDLVINVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDS 380
Query: 378 XXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415
MGDDMVKV+AWYDNEWGYSQRVVDLA +VA+ W
Sbjct: 381 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKW 418
|
|
| TIGR_CMR|CHY_0280 CHY_0280 "glyceraldehyde-3-phosphate dehydrogenase, type I" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 157/345 (45%), Positives = 198/345 (57%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGRN R + +E+VA+ND K +HLLKYDS GIF ADV+
Sbjct: 3 VKVGINGFGRIGRNMFRA--ALNNPEIEIVAVNDLTDAKTLAHLLKYDSVHGIFAADVE- 59
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
D I V+GK ++V + ++P NLPW +LG+++VIE TG F + A KH++AGAKKV+I
Sbjct: 60 AKDDAIVVNGKEVKVYAEKDPANLPWKELGVEIVIESTGKFTKKADAVKHLEAGAKKVII 119
Query: 189 TAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
+AP + T V+GVN D Y P + +ISNASCTTNCLAP KVL +KF
Sbjct: 120 SAPATDEDITIVMGVNEDKYDPANHHVISNASCTTNCLAPVAKVLHEKF----------- 168
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GI+KG MTT HSYT DQ +I+PT+T
Sbjct: 169 --GIVKGLMTTVHSYTNDQRILDLPHKDLRRARAAATSIIPTTTGAAKAVALVLPELKGK 226
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
NG A+RVPTPN K EE+NAA +E+A+ ELKGIL + PLVSVDF
Sbjct: 227 LNGFAMRVPTPNVSVVDLVVELEKPATKEEINAALKEAAEGELKGILGYTELPLVSVDFN 286
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
+ D+M KVIAWYDNEWGYS R+VDLA +A
Sbjct: 287 GNPLSSIVDGLSTMVIEDNMAKVIAWYDNEWGYSNRLVDLATYIA 331
|
|
| UNIPROTKB|Q829W3 gap2 "Glyceraldehyde-3-phosphate dehydrogenase" [Streptomyces avermitilis MA-4680 (taxid:227882)] | Back alignment and assigned GO terms |
|---|
Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
Identities = 147/346 (42%), Positives = 196/346 (56%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
++V INGFGRIGRN+ R + + +E+VA+ND G +HLLKYD+ LG +A+V
Sbjct: 3 IRVGINGFGRIGRNYFRALL-EQGADIEIVAVNDLGDTATTAHLLKYDTILGRLKAEVTH 61
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
D I+VDGK I+V S RNP ++PWG+L +D+VIE TG+F + A KHI GAKKVLI
Sbjct: 62 TA-DTITVDGKTIKVFSERNPADIPWGELNVDIVIESTGIFTKKADAEKHIAGGAKKVLI 120
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
+AP + T V+GVN D Y P + +ISNASCTTNC+AP KVLD+ F
Sbjct: 121 SAPASDEDITIVLGVNEDKYDPAKHNVISNASCTTNCVAPMAKVLDENF----------- 169
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GI+KG MTT H+YT DQ NI+PT+T
Sbjct: 170 --GIVKGLMTTIHAYTNDQRILDFPHKDLRRARAAAENIIPTTTGAAKATALVLPQLKGK 227
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
+GI++RVP P S++ +EVNAAF+++A+ EL+G LS ++P+VS D
Sbjct: 228 MDGISMRVPVPTGSATDLVVEVSREVTKDEVNAAFKKAAEGELQGYLSYTEDPIVSSDIV 287
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
M VK++ WYDNEWGYS R+VDL V N
Sbjct: 288 GDPSSCTFDSAMTMVMEGTSVKILGWYDNEWGYSNRLVDLTVFVGN 333
|
|
| TIGR_CMR|GSU_1629 GSU_1629 "glyceraldehyde 3-phosphate dehydrogenase 1" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 154/346 (44%), Positives = 198/346 (57%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
L+VAINGFGRIGR+ LR K+ +E+VAIND K +HLLKYDS G F V+
Sbjct: 3 LRVAINGFGRIGRSVLRA--AAKEKGIEIVAINDLTDAKTLAHLLKYDSVHGPFPGKVE- 59
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
VG I V+GK I +++ RNP LPW + ID+V+E TG+F RE A H++AGAKKV+I
Sbjct: 60 VGDGAIVVNGKPITIIAERNPELLPWKKMKIDVVLEATGLFTAREKAELHLKAGAKKVII 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
+AP + T V+GVN DAY P + IISNASCTTNCLAP KVL + F
Sbjct: 120 SAPATNEDITIVMGVNHDAYDPKKHNIISNASCTTNCLAPVAKVLHETF----------- 168
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GI KG +TT HSYT DQ +++PT+T
Sbjct: 169 --GIEKGLVTTVHSYTNDQQILDLPHKDLRRARAAAMSMIPTTTGAAKAVSLVLPELKGK 226
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
+G+A+RVPTPN KKT AE+VNAA +++A LKGIL +EPLVS+DF
Sbjct: 227 LDGMAIRVPTPNVSVVDLVVTLKKKTDAEKVNAALKKAAKGSLKGILRFEEEPLVSIDFN 286
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
+ MVKV++WYDNE G+S RVVDL ++A+
Sbjct: 287 GTTHSSIVDALSTKVIDGTMVKVLSWYDNETGFSNRVVDLMKLIAS 332
|
|
| TIGR_CMR|BA_4827 BA_4827 "glyceraldehyde 3-phosphate dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 150/345 (43%), Positives = 196/345 (56%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
+VAINGFGRIGR R K+S E+VAIN + + +HL+KYD+ G F+ V+
Sbjct: 3 RVAINGFGRIGRMVFR--QAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAF 60
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
D + VDGK+I++++NR+P LPW DLG+++VIE TG F +E A H++AGAKKV++T
Sbjct: 61 -EDHLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILT 119
Query: 190 APGKGDIPTYVVGVNADAYK-PDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
APGK + T VVGVN D +ISNASCTTNCLAP VKVLD++F
Sbjct: 120 APGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQF------------ 167
Query: 249 AGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXX 308
GI G MTT H+YT DQ +I+PT+T
Sbjct: 168 -GIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKL 226
Query: 309 NGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRC 368
+G+ALRVPTPN + E +N AF+ A+ LKGI+ +EPLVS+DF
Sbjct: 227 HGMALRVPTPNVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVSIDFNT 286
Query: 369 XXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
MGD VKV+AWYDNEWGYS+RVVDL +V +
Sbjct: 287 NTHSAIIDGLSTMVMGDRKVKVLAWYDNEWGYSRRVVDLVTLVVD 331
|
|
| TIGR_CMR|BA_5369 BA_5369 "glyceraldehyde 3-phosphate dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 145/340 (42%), Positives = 188/340 (55%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
K+ INGFGRIGRN R +S +EVVAIND K +HLLKYD+ G A+V
Sbjct: 3 KIGINGFGRIGRNVFRA--ALNNSEVEVVAINDLTDAKTLAHLLKYDTVHGTLNAEVS-A 59
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
+ I V+GK I+V++ R+P LPW D G+++V+E TG F + A KH+ KKV+I+
Sbjct: 60 NENSIVVNGKEIKVIAERDPAQLPWSDYGVEVVVESTGRFTKKSDAEKHLGGSVKKVIIS 119
Query: 190 APGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
AP + T V+GVN + Y + ++SNASCTTNCLAPF KVL++KF
Sbjct: 120 APASDEDITVVMGVNHEQYDAANHNVVSNASCTTNCLAPFAKVLNEKF------------ 167
Query: 249 AGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXX 308
G+ +G MTT HSYT DQ N++PTST
Sbjct: 168 -GVKRGMMTTIHSYTNDQQILDLPHKDLRRARAAAENMIPTSTGAAKAVALVLPELKGKL 226
Query: 309 NGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRC 368
NG A+RVPT N K+ EEVNAAF+ +A+ ELKGIL +EPLVS+D+
Sbjct: 227 NGGAVRVPTANVSLVDLVVELDKEVTVEEVNAAFKAAAEGELKGILGYSEEPLVSIDYNG 286
Query: 369 XXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 408
M +MVKV++WYDNE GYS RVVDLA
Sbjct: 287 CTASSTIDALSTMVMEGNMVKVLSWYDNETGYSNRVVDLA 326
|
|
| TIGR_CMR|CBU_1783 CBU_1783 "glyceraldehyde 3-phosphate dehydrogenase, type I" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 140/339 (41%), Positives = 188/339 (55%)
Query: 71 VAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
+AING+GRIGRN LR + K+ L++V IND G +K +HL KYDS G F +V
Sbjct: 5 IAINGYGRIGRNILRALYESGKNKDLKIVGINDLGDIKTNAHLTKYDSVHGRFSGEVGVS 64
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
G + + ++G I+V + RNP LPW +L +DLV+E TG+F +E A H++AGAKKVLI+
Sbjct: 65 G-NSLVINGDKIEVCAIRNPEELPWRNLEVDLVLECTGLFTSKEKAEAHLKAGAKKVLIS 123
Query: 190 APGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCA 249
AP D+ T V GVN + D+ IISNASCTTNCLAP VKVL ND I
Sbjct: 124 APAGNDVKTIVFGVNENIISSDDEIISNASCTTNCLAPLVKVL--------NDEI----- 170
Query: 250 GIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXN 309
GI +G M T H+YT DQ +++PT T +
Sbjct: 171 GIERGLMVTVHAYTNDQNLTDSYHKDLHRARAATQSMIPTKTGAAAAVGLVLPELDGKLD 230
Query: 310 GIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCX 369
G A+RVPT N K A +VNA +++A ++KG+L DEPLVS+DF
Sbjct: 231 GYAIRVPTINVSVIDFTFDAKKLVSASDVNAMMKKAAQGKMKGVLGYNDEPLVSIDFNHD 290
Query: 370 XXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 408
+ D +VKV++WYDNEWG+S R++D A
Sbjct: 291 PHSSVFDAGQTRVI-DQLVKVVSWYDNEWGFSNRMLDTA 328
|
|
| UNIPROTKB|P64178 gap "Glyceraldehyde-3-phosphate dehydrogenase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 147/350 (42%), Positives = 187/350 (53%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKD---SPLEVVAINDTGGVKQASHLLKYDSTLGIFEAD 125
++V INGFGRIGRNF R +++ + +EVVA ND +HLLK+DS LG D
Sbjct: 3 VRVGINGFGRIGRNFYRALLAQQEQGTADVEVVAANDITDNSTLAHLLKFDSILGRLPCD 62
Query: 126 VKPVGTDGISVDGKVIQVVSNRN-PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184
V G D I V I+ ++ R P LPWGDLG+D+V+E TG+F + A H+ AGAK
Sbjct: 63 VGLEGDDTIVVGRAKIKALAVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAK 122
Query: 185 KVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRI 244
KV+I+AP + T V+GVN D Y + IISNASCTTNCLAP KVLD +F
Sbjct: 123 KVIISAPATDEDITIVLGVNDDKYDGSQNIISNASCTTNCLAPLAKVLDDEF-------- 174
Query: 245 FPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXX 304
GI+KG MTT H+YT DQ NIVPTST
Sbjct: 175 -----GIVKGLMTTIHAYTQDQNLQDGPHKDLRRARAAALNIVPTSTGAAKAIGLVMPQL 229
Query: 305 XXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSV 364
+G ALRVP P S + +E+NAAF+ +A+ LKGIL D P+VS
Sbjct: 230 KGKLDGYALRVPIPTGSVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSS 289
Query: 365 DFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 414
D + DD KV++WYDNEWGYS R+VDL +V +
Sbjct: 290 DIVTDPHSSIFDSGLTKVI-DDQAKVVSWYDNEWGYSNRLVDLVTLVGKS 338
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q4MQ58 | G3P1_BACCE | 1, ., 2, ., 1, ., 1, 2 | 0.5470 | 0.7764 | 0.9670 | yes | no |
| Q5HNL7 | G3P2_STAEQ | 1, ., 2, ., 1, ., 1, 2 | 0.5102 | 0.7692 | 0.9384 | yes | no |
| P09315 | G3PA_MAIZE | 1, ., 2, ., 1, ., 1, 3 | 0.8157 | 0.9639 | 0.9950 | N/A | no |
| P09043 | G3PA_TOBAC | 1, ., 2, ., 1, ., 1, 3 | 0.8472 | 0.9399 | 0.9974 | N/A | no |
| P09316 | G3P_ZYMMO | 1, ., 2, ., 1, ., 1, 2 | 0.5233 | 0.7836 | 0.9673 | yes | no |
| P09044 | G3PB_TOBAC | 1, ., 2, ., 1, ., 1, 3 | 0.7361 | 0.9134 | 0.8675 | N/A | no |
| P50362 | G3PA_CHLRE | 1, ., 2, ., 1, ., 1, 3 | 0.7378 | 0.8365 | 0.9304 | N/A | no |
| P12858 | G3PA_PEA | 1, ., 2, ., 1, ., 1, 3 | 0.8516 | 0.9687 | 0.9950 | N/A | no |
| P12859 | G3PB_PEA | 1, ., 2, ., 1, ., 1, 3 | 0.7160 | 0.9134 | 0.8425 | N/A | no |
| P17721 | G3P_THEMA | 1, ., 2, ., 1, ., 1, 2 | 0.5438 | 0.7884 | 0.9849 | yes | no |
| P94915 | G3P_MYCAV | 1, ., 2, ., 1, ., 1, 2 | 0.5244 | 0.7908 | 0.9705 | yes | no |
| P50322 | G3PP_CUPNH | 1, ., 2, ., 1, ., 1, 2 | 0.5129 | 0.7932 | 0.9821 | yes | no |
| P58554 | G3P2_NOSS1 | 1, ., 2, ., 1, ., 1, 2 | 0.6436 | 0.8028 | 0.9910 | yes | no |
| P50321 | G3PC_CUPNH | 1, ., 2, ., 1, ., 1, 2 | 0.5100 | 0.7932 | 0.9821 | yes | no |
| P30724 | G3PA_GRAGA | 1, ., 2, ., 1, ., 1, 3 | 0.6204 | 0.9062 | 0.9062 | N/A | no |
| P64178 | G3P_MYCTU | 1, ., 2, ., 1, ., 1, 2 | 0.5331 | 0.7908 | 0.9705 | yes | no |
| P64179 | G3P_MYCBO | 1, ., 2, ., 1, ., 1, 2 | 0.5331 | 0.7908 | 0.9705 | yes | no |
| P09124 | G3P1_BACSU | 1, ., 2, ., 1, ., 1, 2 | 0.5507 | 0.7884 | 0.9791 | yes | no |
| O67161 | G3P_AQUAE | 1, ., 2, ., 1, ., 1, 2 | 0.5459 | 0.7740 | 0.9415 | yes | no |
| Q8VXQ9 | G3PA_SCEVA | 1, ., 2, ., 1, ., 1, 3 | 0.7767 | 0.7524 | 0.9968 | N/A | no |
| Q6CCU7 | G3P_YARLI | 1, ., 2, ., 1, ., 1, 2 | 0.5043 | 0.7860 | 0.9674 | yes | no |
| P12860 | G3PB_SPIOL | 1, ., 2, ., 1, ., 1, 3 | 0.725 | 0.9062 | 0.8359 | N/A | no |
| Q9Z7T0 | G3P_CHLPN | 1, ., 2, ., 1, ., 1, 2 | 0.5028 | 0.8004 | 0.9940 | yes | no |
| A0QWW2 | G3P_MYCS2 | 1, ., 2, ., 1, ., 1, 2 | 0.5086 | 0.7908 | 0.9676 | yes | no |
| P46713 | G3P_MYCLE | 1, ., 2, ., 1, ., 1, 2 | 0.5071 | 0.7860 | 0.9646 | yes | no |
| P34917 | G3P2_ANAVT | 1, ., 2, ., 1, ., 1, 2 | 0.6436 | 0.8028 | 0.9910 | yes | no |
| P46795 | G3P_BORBU | 1, ., 2, ., 1, ., 1, 2 | 0.5229 | 0.7740 | 0.9611 | yes | no |
| P23722 | G3P_BACMD | 1, ., 2, ., 1, ., 1, 2 | 0.5449 | 0.7884 | 0.9791 | yes | no |
| P19866 | G3PA_SPIOL | 1, ., 2, ., 1, ., 1, 3 | 0.8149 | 0.9639 | 1.0 | N/A | no |
| P34919 | G3PA_CHOCR | 1, ., 2, ., 1, ., 1, 3 | 0.6018 | 0.9543 | 0.9589 | N/A | no |
| Q9Z518 | G3P_STRCO | 1, ., 2, ., 1, ., 1, 2 | 0.5431 | 0.7956 | 0.9851 | yes | no |
| P25856 | G3PA_ARATH | 1, ., 2, ., 1, ., 1, 3 | 0.8349 | 0.9471 | 0.9949 | yes | no |
| P25857 | G3PB_ARATH | 1, ., 2, ., 1, ., 1, 3 | 0.7185 | 0.9062 | 0.8434 | no | no |
| P80505 | G3P2_SYNY3 | 1, ., 2, ., 1, ., 5, 9 | 0.7077 | 0.8004 | 0.9881 | N/A | no |
| Q8CNY0 | G3P2_STAES | 1, ., 2, ., 1, ., 1, 2 | 0.5088 | 0.7668 | 0.9354 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pg.C_LG_XIV0805 | SubName- Full=Putative uncharacterized protein; (404 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| grail3.0154005402 | phosphoglycerate kinase (EC-2.7.7.2 2.7.2.3) (402 aa) | • | • | • | 0.516 | ||||||
| eugene3.00080776 | RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (402 aa) | • | • | • | 0.517 | ||||||
| estExt_fgenesh4_pm.C_LG_VIII0335 | phosphoglycerate kinase (481 aa) | • | • | 0.438 | |||||||
| estExt_fgenesh4_pm.C_LG_X0655 | phosphoglycerate kinase (481 aa) | • | • | 0.434 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 416 | |||
| PLN03096 | 395 | PLN03096, PLN03096, glyceraldehyde-3-phosphate deh | 0.0 | |
| PLN02237 | 442 | PLN02237, PLN02237, glyceraldehyde-3-phosphate deh | 0.0 | |
| PRK07403 | 337 | PRK07403, PRK07403, glyceraldehyde-3-phosphate deh | 0.0 | |
| TIGR01534 | 326 | TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate deh | 1e-172 | |
| COG0057 | 335 | COG0057, GapA, Glyceraldehyde-3-phosphate dehydrog | 1e-168 | |
| PRK07729 | 343 | PRK07729, PRK07729, glyceraldehyde-3-phosphate deh | 1e-160 | |
| PLN02272 | 421 | PLN02272, PLN02272, glyceraldehyde-3-phosphate deh | 1e-113 | |
| PTZ00023 | 337 | PTZ00023, PTZ00023, glyceraldehyde-3-phosphate deh | 1e-110 | |
| PRK13535 | 336 | PRK13535, PRK13535, erythrose 4-phosphate dehydrog | 1e-105 | |
| PRK08955 | 334 | PRK08955, PRK08955, glyceraldehyde-3-phosphate deh | 1e-104 | |
| TIGR01532 | 325 | TIGR01532, E4PD_g-proteo, erythrose-4-phosphate de | 1e-100 | |
| PRK15425 | 331 | PRK15425, gapA, glyceraldehyde-3-phosphate dehydro | 1e-96 | |
| PTZ00434 | 361 | PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-pho | 2e-94 | |
| PLN02358 | 338 | PLN02358, PLN02358, glyceraldehyde-3-phosphate deh | 2e-94 | |
| PRK08289 | 477 | PRK08289, PRK08289, glyceraldehyde-3-phosphate deh | 1e-89 | |
| pfam02800 | 157 | pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate deh | 3e-84 | |
| pfam00044 | 148 | pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate deh | 1e-74 | |
| smart00846 | 149 | smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate de | 4e-69 | |
| PTZ00353 | 342 | PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-ph | 7e-33 |
| >gnl|CDD|215572 PLN03096, PLN03096, glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Score = 737 bits (1905), Expect = 0.0
Identities = 335/411 (81%), Positives = 363/411 (88%), Gaps = 16/411 (3%)
Query: 6 LSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAA 65
S AK +LQ KGFSEFSGL++S+++ FG++S + ++ SSS G R+
Sbjct: 1 FSAAKPSLQAGSKGFSEFSGLKSSSAVTFGKRSDSL---DFVVFATSAVSSSGGARRAVT 57
Query: 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEAD 125
+AK+KVAINGFGRIGRNFLRCWHGRKDSPL+VVAINDTGGVKQASHLLKYDSTLG F+AD
Sbjct: 58 EAKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDAD 117
Query: 126 VKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKK 185
VKPVG D ISVDGKVI+VVS+RNP+NLPWG+LGIDLVIEGTGVFVDREGAGKHIQAGAKK
Sbjct: 118 VKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKK 177
Query: 186 VLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
VLITAPGKGDIPTYVVGVNAD YK +PIISNASCTTNCLAPFVKVLDQKF
Sbjct: 178 VLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCLAPFVKVLDQKF--------- 228
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLP LK
Sbjct: 229 ----GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLK 284
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
GKLNGIALRVPTPNVSVVDLVVQV KKTFAEEVNAAFR++A+ ELKGIL+VCDEPLVSVD
Sbjct: 285 GKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVD 344
Query: 366 FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
FRCSDVSST+DSSLT+VMGDDMVKV+AWYDNEWGYSQRVVDLADIVAN WK
Sbjct: 345 FRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLADIVANKWK 395
|
Length = 395 |
| >gnl|CDD|215131 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B | Back alignment and domain information |
|---|
Score = 624 bits (1610), Expect = 0.0
Identities = 296/416 (71%), Positives = 334/416 (80%), Gaps = 19/416 (4%)
Query: 4 ATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSD-DFHSVIALQTSALGSSSSGYRK 62
AT + A + +EFSGLR S+ + F + + + F V+A Q + + S+ R
Sbjct: 12 ATTRLPSKASHKRLE-VAEFSGLRASSCVTFAKNAREASFFDVVASQLAPKVAGSTPVRG 70
Query: 63 VAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIF 122
AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV +ND+GGVK ASHLLKYDS LG F
Sbjct: 71 ET-VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTF 129
Query: 123 EADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAG 182
+ADVK V + ISVDGK I+VVSNR+P+ LPW +LGID+VIEGTGVFVD GAGKHIQAG
Sbjct: 130 KADVKIVDDETISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAG 189
Query: 183 AKKVLITAPGKG-DIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFVTQL 240
AKKV+ITAP KG DIPTYVVGVN D Y + I+SNASCTTNCLAPFVKVLD++F
Sbjct: 190 AKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTNCLAPFVKVLDEEF---- 245
Query: 241 NDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALV 300
GI+KGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV+LV
Sbjct: 246 ---------GIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLV 296
Query: 301 LPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTF-AEEVNAAFRESADNELKGILSVCDE 359
LP LKGKLNGIALRVPTPNVSVVDLVV V KK AE+VNAAFR++AD LKGIL+VCD
Sbjct: 297 LPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDV 356
Query: 360 PLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415
PLVSVDFRCSDVSST+D+SLT+VMGDDMVKV+AWYDNEWGYSQRVVDLA +VA W
Sbjct: 357 PLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAAKW 412
|
Length = 442 |
| >gnl|CDD|180962 PRK07403, PRK07403, glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 531 bits (1369), Expect = 0.0
Identities = 244/350 (69%), Positives = 279/350 (79%), Gaps = 16/350 (4%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
++VAINGFGRIGRNFLRCW GR++S LE+VAINDT + +HLLKYDS LG AD+
Sbjct: 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADIS- 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ I+V+GK I+ VS+RNP+NLPW + GIDL+IE TGVFV +EGA KHIQAGAKKVLI
Sbjct: 61 ADENSITVNGKTIKCVSDRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLI 120
Query: 189 TAPGKG-DIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
TAPGKG DI TYVVGVN Y ++ IISNASCTTNCLAP KVL F
Sbjct: 121 TAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLAPIAKVLHDNF---------- 170
Query: 247 MCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306
GIIKGTMTTTHSYTGDQR+LDASHRDLRRARAAA+NIVPTSTGAAKAVALV+P LKG
Sbjct: 171 ---GIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELKG 227
Query: 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
KLNGIALRVPTPNVSVVDLVVQV K+T E+VN +++++ LKGIL D PLVS D+
Sbjct: 228 KLNGIALRVPTPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDY 287
Query: 367 RCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
R +D SS VD+SLT+VMG DMVKVIAWYDNEWGYSQRVVDLA++VA WK
Sbjct: 288 RGTDASSIVDASLTMVMGGDMVKVIAWYDNEWGYSQRVVDLAELVARKWK 337
|
Length = 337 |
| >gnl|CDD|233453 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type I | Back alignment and domain information |
|---|
Score = 484 bits (1247), Expect = e-172
Identities = 199/340 (58%), Positives = 238/340 (70%), Gaps = 17/340 (5%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
KV INGFGRIGR LR + + LEVVAIND ++ ++LLKYDS G FE +V
Sbjct: 1 KVGINGFGRIGRLVLRAILEKPGNDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVT-A 59
Query: 130 GTDGISVDGK-VIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
DG+ V+GK VI V S R+P +LPW LG+D+VIE TG F D+E H++AGAKKVLI
Sbjct: 60 DEDGLVVNGKEVISVFSERDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLI 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
+AP KGD+ T V GVN D Y P E I+SNASCTTNCLAP KVLD+ F
Sbjct: 120 SAPSKGDVKTIVYGVNHDEYDPSERIVSNASCTTNCLAPLAKVLDEAF------------ 167
Query: 249 AGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKL 308
GI+ G MTT HSYT DQ L+D H+DLRRARAAALNI+PTSTGAAKA+ VLP L GKL
Sbjct: 168 -GIVSGLMTTVHSYTNDQNLVDGPHKDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKL 226
Query: 309 NGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRC 368
G+A+RVPTPNVS+VDLVV + K EEVNAA +E+A+ ELKG+L ++ LVS DF
Sbjct: 227 TGMAIRVPTPNVSLVDLVVNLEKDVTVEEVNAALKEAAEGELKGVLGYTEDELVSSDFIG 286
Query: 369 SDVSSTVDSSLTLVMGDD--MVKVIAWYDNEWGYSQRVVD 406
S SS VD++ T V G +VKV+AWYDNEWGYS RVVD
Sbjct: 287 SPYSSIVDATATKVTGLGDSLVKVVAWYDNEWGYSNRVVD 326
|
This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two PFAM models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 326 |
| >gnl|CDD|223135 COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 474 bits (1222), Expect = e-168
Identities = 198/350 (56%), Positives = 245/350 (70%), Gaps = 16/350 (4%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
+KVAINGFGRIGR R R +EVVAIND +HLLKYDS G F+ +V+
Sbjct: 1 MIKVAINGFGRIGRLVARAALERDGD-IEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVE 59
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQA-GAKKV 186
D + V+GK I+V++ R+P NLPW DLG+D+V+E TG F RE A KH++A GAKKV
Sbjct: 60 VKD-DALVVNGKGIKVLAERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKV 118
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
LI+APGK D+ T V GVN + Y I+SNASCTTNCLAP KVL+ F
Sbjct: 119 LISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLNDAF---------- 168
Query: 247 MCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306
GI KG MTT H+YT DQ+L+D H+DLRRARAAALNI+PTSTGAAKAV LVLP LKG
Sbjct: 169 ---GIEKGLMTTVHAYTNDQKLVDGPHKDLRRARAAALNIIPTSTGAAKAVGLVLPELKG 225
Query: 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
KL G+A+RVPTPNVSVVDL V++ K+ EE+NAA + +++ LKGIL ++PLVS DF
Sbjct: 226 KLTGMAIRVPTPNVSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDF 285
Query: 367 RCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
SS D+S T+V+G ++VK++AWYDNEWGYS RVVDL +VA K
Sbjct: 286 NGDPHSSIFDASATIVLGGNLVKLVAWYDNEWGYSNRVVDLLAMVAKALK 335
|
Length = 335 |
| >gnl|CDD|236079 PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 454 bits (1169), Expect = e-160
Identities = 192/350 (54%), Positives = 243/350 (69%), Gaps = 17/350 (4%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
K KVAINGFGRIGR R K+S E+VAIN + + +HL+KYD+ G F+ V+
Sbjct: 2 KTKVAINGFGRIGRMVFR--KAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVE 59
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
D + VDGK I++++NR+P LPW DLGID+VIE TG F +E A H++AGAKKV+
Sbjct: 60 AFE-DHLLVDGKKIRLLNNRDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVI 118
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
+TAPGK + T VVGVN D ++ IISNASCTTNCLAP VKVLD++F
Sbjct: 119 LTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLAPVVKVLDEQF---------- 168
Query: 247 MCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306
GI G MTT H+YT DQ+ +D H+DLRRARA +I+PT+TGAAKA+A VLP L G
Sbjct: 169 ---GIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPHLNG 225
Query: 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
KL+G+ALRVPTPNVS+VDLVV V + EE+N AF+ +A+ LKGIL +EPLVS+DF
Sbjct: 226 KLHGMALRVPTPNVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDF 285
Query: 367 RCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
+ S+ +D T+VMGD VKV+AWYDNEWGYS RVVDL +VA+
Sbjct: 286 NTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEWGYSCRVVDLVTLVADELA 335
|
Length = 343 |
| >gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 337 bits (867), Expect = e-113
Identities = 178/419 (42%), Positives = 242/419 (57%), Gaps = 33/419 (7%)
Query: 2 ASATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYR 61
+ + S + S+ S + S+SL F SS + +LQ+ S +
Sbjct: 12 TAPAAAARGSDFSSSSSDPSKVSSVGFSSSLSFSGSSSG---ASSSLQSC-SARSVQPIK 67
Query: 62 KVAAQA-----------KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQA 109
A +A K K+ INGFGRIGR LR R D +EVVA+ND K
Sbjct: 68 ATATEAPPAVLKSSSSGKTKIGINGFGRIGRLVLRIATSRDD--IEVVAVNDPFIDAKYM 125
Query: 110 SHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVF 169
+++ KYDST G F+ + V + ++GK I+V S R+P +PWGD G + V+E +GVF
Sbjct: 126 AYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRDPAEIPWGDFGAEYVVESSGVF 185
Query: 170 VDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFV 229
E A H++ GAKKV+I+AP D P +VVGVN YKP+ I+SNASCTTNCLAP
Sbjct: 186 TTVEKASAHLKGGAKKVVISAP-SADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLA 244
Query: 230 KVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVP 288
KV+ ++F GI++G MTT H+ T Q+ +D S +D R R A+ NI+P
Sbjct: 245 KVVHEEF-------------GILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIP 291
Query: 289 TSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN 348
+STGAAKAV VLP L GKL G+A RVPTPNVSVVDL ++ K E+V AA + +++
Sbjct: 292 SSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEG 351
Query: 349 ELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDL 407
LKGIL DE +VS DF SS D+ + + +K+++WYDNEWGYS RV+DL
Sbjct: 352 PLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDL 410
|
Length = 421 |
| >gnl|CDD|173322 PTZ00023, PTZ00023, glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 326 bits (836), Expect = e-110
Identities = 157/349 (44%), Positives = 212/349 (60%), Gaps = 20/349 (5%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR R R+D +EVVAIND + +LLKYDS G A+V
Sbjct: 4 KLGINGFGRIGRLVFRAALERED--VEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSV 61
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ + K + V ++P +PWG G+D+V E TGVF+ +E A H++ GAKKV++
Sbjct: 62 -TDGFLMIGSKKVHVFFEKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM 120
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
+AP K D P YV+GVN Y + I+SNASCTTNCLAP KV++ KF
Sbjct: 121 SAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAPLAKVVNDKF------------ 168
Query: 249 AGIIKGTMTTTHSYTGDQRLLDASHR---DLRRARAAALNIVPTSTGAAKAVALVLPALK 305
GI++G MTT H+ T +Q +D + D R R A +NI+P STGAAKAV V+P L
Sbjct: 169 -GIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELN 227
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
GKL G+A RVP P+VSVVDL +++K EE+ AA +++A+ LKGIL D+ +VS D
Sbjct: 228 GKLTGMAFRVPVPDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSD 287
Query: 366 FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 414
F SS D + + D VK+++WYDNEWGYS R++DLA +
Sbjct: 288 FVHDKRSSIFDVKAGIALNDTFVKLVSWYDNEWGYSNRLLDLAHYITQK 336
|
Length = 337 |
| >gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 313 bits (805), Expect = e-105
Identities = 144/341 (42%), Positives = 204/341 (59%), Gaps = 18/341 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
++VAINGFGRIGRN LR + GR+ + VVAIN+ + +HLLKYD++ G F DV
Sbjct: 2 IRVAINGFGRIGRNVLRALYESGRRAE-ITVVAINELADAEGMAHLLKYDTSHGRFAWDV 60
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ D + V I+++ R+ +LPW +LG+D+V++ TGV+ RE HI AGAKKV
Sbjct: 61 R-QERDQLFVGDDAIRLLHERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKV 119
Query: 187 LITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
L + PG D+ T V GVN D + + I+SNASCTTNC+ P +K+LD F
Sbjct: 120 LFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNCIIPVIKLLDDAF--------- 170
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305
GI GT+TT HS DQ+++DA H DLRR RAA+ +I+P T A + + P
Sbjct: 171 ----GIESGTVTTIHSAMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFN 226
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
+ I++RVPT NV+ +DL V V K EVN +++A GI+ + PLVS+D
Sbjct: 227 DRFEAISVRVPTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSID 286
Query: 366 FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVD 406
F S+ VD + T V G ++K + W DNEWG++ R++D
Sbjct: 287 FNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 327
|
Length = 336 |
| >gnl|CDD|169599 PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 311 bits (799), Expect = e-104
Identities = 153/347 (44%), Positives = 209/347 (60%), Gaps = 21/347 (6%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADV 126
+KV INGFGRIGR LR + LE V IND G +HLL++DS G + +V
Sbjct: 2 TIKVGINGFGRIGRLALRAAWDWPE--LEFVQINDPAGDAATLAHLLEFDSVHGRWHHEV 59
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
G D I ++GK I+ N+ + W G D+VIE +GV + ++ G K+V
Sbjct: 60 TAEG-DAIVINGKRIRTTQNKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRV 116
Query: 187 LITAPGKGD-IPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDRI 244
++TAP K + + V+GVN + P PI++ ASCTTNCLAP VKV+ +K
Sbjct: 117 VVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCLAPVVKVIHEKL-------- 168
Query: 245 FPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPAL 304
GI G+MTT H T Q +LDA H+DLRRARA ++++PT+TG+A A+ + P L
Sbjct: 169 -----GIKHGSMTTIHDLTNTQTILDAPHKDLRRARACGMSLIPTTTGSATAITEIFPEL 223
Query: 305 KGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSV 364
KGKLNG A+RVP N S+ D V +V + T EEVNA +E+A+ ELKGIL + PLVS+
Sbjct: 224 KGKLNGHAVRVPLANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSI 283
Query: 365 DFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIV 411
D++ SS VD+ T+V+ VK+ AWYDNEWGY+ R +LA V
Sbjct: 284 DYKTDPRSSIVDALSTMVVNGTQVKLYAWYDNEWGYANRTAELARKV 330
|
Length = 334 |
| >gnl|CDD|130595 TIGR01532, E4PD_g-proteo, erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 301 bits (771), Expect = e-100
Identities = 147/339 (43%), Positives = 203/339 (59%), Gaps = 16/339 (4%)
Query: 70 KVAINGFGRIGRNFLRCWHGR-KDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+VAINGFGRIGRN LR + + + + VVAIN+ +HLLKYD++ G F +V+
Sbjct: 1 RVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVR- 59
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
D + V I+V+ R+ +LPW +LG+DLV++ TGV+ RE HI AGAKKVL
Sbjct: 60 QDRDQLFVGDDAIRVLHERSLQSLPWRELGVDLVLDCTGVYGSREHGEAHIAAGAKKVLF 119
Query: 189 TAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
+ PG D+ T V GVN D + + I+SNASCTTNC+ P +K+LD +
Sbjct: 120 SHPGASDLDATIVYGVNQDQLRAEHRIVSNASCTTNCIVPVIKLLDDAY----------- 168
Query: 248 CAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307
GI GT+TT HS DQ+++DA H DLRR RAA+ +I+P T A + P +
Sbjct: 169 --GIESGTITTIHSAMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGIERFFPQFNDR 226
Query: 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
IA+RVPT NV+ +DL V V K A EVN +++A L+GI+ + PLVSVDF
Sbjct: 227 FEAIAVRVPTVNVTAIDLSVTVKKPVKANEVNLLLQKAAQGALRGIVDYTELPLVSVDFN 286
Query: 368 CSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVD 406
S+ VD + T V G +VK + W DNEWG++ R++D
Sbjct: 287 HDPHSAIVDGTQTRVSGAHLVKTLVWCDNEWGFANRMLD 325
|
This model represents the small clade of dehydrogenases in gamma-proteobacteria which utilize NAD+ to oxidize erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a precursor for the de novo synthesis of pyridoxine via 4-hydroxythreonine and D-1-deoxyxylulose. This enzyme activity appears to have evolved from glyceraldehyde-3-phosphate dehydrogenase, whose substrate differs only in the lack of one carbon relative to E4P. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine]. Length = 325 |
| >gnl|CDD|185323 PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Score = 292 bits (748), Expect = 1e-96
Identities = 162/340 (47%), Positives = 220/340 (64%), Gaps = 18/340 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND +++LKYDST G F+ V+
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 59
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV++
Sbjct: 60 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
T P K + P +V G N D Y + I+SNASCTTNCLAP KV++ F
Sbjct: 120 TGPSKDNTPMFVKGANFDKYA-GQDIVSNASCTTNCLAPLAKVINDNF------------ 166
Query: 249 AGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307
GII+G MTT H+ T Q+ +D SH+D R R A+ NI+P+STGAAKAV VLP L GK
Sbjct: 167 -GIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGK 225
Query: 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
L G+A RVPTPNVSVVDL V++ K E++ AA + +A+ E+KG+L ++ +VS DF
Sbjct: 226 LTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFN 285
Query: 368 CSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDL 407
+S D+ + + D+ VK+++WYDNE GYS +V+DL
Sbjct: 286 GEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 325
|
Length = 331 |
| >gnl|CDD|185614 PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 287 bits (736), Expect = 2e-94
Identities = 162/363 (44%), Positives = 223/363 (61%), Gaps = 29/363 (7%)
Query: 67 AKLKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFE 123
A +KV INGFGRIGR + C G + ++VVA+ D + + ++ +KYD+ G +
Sbjct: 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK 61
Query: 124 ADVKPVGT-------DGISVDGKVIQVV-SNRNPVNLPWGDLGIDLVIEGTGVFVDREGA 175
V+ + D + V+G I+ V + RNP +LPWG LG+D VIE TG+F D+ A
Sbjct: 62 YTVETTKSSPSVKTDDVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAA 121
Query: 176 GKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQ 234
H++ GAKKV+I+AP G T V+GVN Y P E ++SNASCTTNCLAP V VL +
Sbjct: 122 EGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHHVVSNASCTTNCLAPIVHVLTK 181
Query: 235 KFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGA 293
+ GI G MTT HSYT Q+ +D S +D R RAAA+NI+P++TGA
Sbjct: 182 EGF------------GIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGA 229
Query: 294 AKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGI 353
AKAV +V+P+ KGKL G++ RVPTP+VSVVDL + ++ T +E++AA + ++ +KGI
Sbjct: 230 AKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGI 289
Query: 354 LSVCDEPLVSVDFRCSDVSSTVDSSLTLVMG----DDMVKVIAWYDNEWGYSQRVVDLAD 409
L D+ LVS DF + SS DS TL K+++WYDNEWGYS RVVDL
Sbjct: 290 LGFTDDELVSADFINDNRSSIYDSKATLQNNLPGERRFFKIVSWYDNEWGYSHRVVDLVR 349
Query: 410 IVA 412
+A
Sbjct: 350 YMA 352
|
Length = 361 |
| >gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 286 bits (733), Expect = 2e-94
Identities = 161/346 (46%), Positives = 220/346 (63%), Gaps = 19/346 (5%)
Query: 65 AQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFE 123
A K+++ INGFGRIGR R R D +E+VA+ND + +++ KYDS G ++
Sbjct: 2 ADKKIRIGINGFGRIGRLVARVVLQRDD--VELVAVNDPFITTEYMTYMFKYDSVHGQWK 59
Query: 124 ADVKPVGTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAG 182
V D + G K + V RNP ++PWG+ G D V+E TGVF D++ A H++ G
Sbjct: 60 HHELKVKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGG 119
Query: 183 AKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLND 242
AKKV+I+AP K D P +VVGVN YK D I+SNASCTTNCLAP KV++ +F
Sbjct: 120 AKKVVISAPSK-DAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRF------ 172
Query: 243 RIFPMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVL 301
GI++G MTT HS T Q+ +D S +D R RAA+ NI+P+STGAAKAV VL
Sbjct: 173 -------GIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVL 225
Query: 302 PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPL 361
P+L GKL G++ RVPT +VSVVDL V++ K +E+ A +E ++ +LKGIL ++ +
Sbjct: 226 PSLNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDV 285
Query: 362 VSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDL 407
VS DF + SS D+ + + D VK+++WYDNEWGYS RVVDL
Sbjct: 286 VSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDL 331
|
Length = 338 |
| >gnl|CDD|236219 PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 279 bits (715), Expect = 1e-89
Identities = 143/355 (40%), Positives = 198/355 (55%), Gaps = 28/355 (7%)
Query: 71 VAINGFGRIGRNFLR--CWHGRKDSPLEVVAINDTGG-----VKQASHLLKYDSTLGIFE 123
V + GFGRIGR R + L + AI G K+AS LL+ DS G F
Sbjct: 130 VVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRAS-LLRRDSVHGPFN 188
Query: 124 ADVKP-VGTDGISVDGKVIQVVSNRNPVNLPWGDLGID--LVIEGTGVFVDREGAGKHIQ 180
+ + I +G IQV+ +P + + GI+ LV++ TG + D EG +H++
Sbjct: 189 GTITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLK 248
Query: 181 A-GAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQ 239
+ G KVL+TAPGKGDI V GVN ++ I+S ASCTTN + P +K ++ K+
Sbjct: 249 SKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVSAASCTTNAITPVLKAVNDKY--- 305
Query: 240 LNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 299
GI+ G + T HSYT DQ L+D H+ RR R+A LN+V T TGAAKAVA
Sbjct: 306 ----------GIVNGHVETVHSYTNDQNLIDNYHKGDRRGRSAPLNMVITETGAAKAVAK 355
Query: 300 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRE-SADNELKGILSVCD 358
LP L GKL G A+RVPTPNVS+ L + + K+T EE+N R+ S + L+ + D
Sbjct: 356 ALPELAGKLTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTD 415
Query: 359 EP-LVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
+VS DF S + VDS T+V G+ V + WYDNE+GYS +VV + + +A
Sbjct: 416 STEVVSSDFVGSRHAGVVDSQATIVNGNRAV-LYVWYDNEFGYSCQVVRVMEQMA 469
|
Length = 477 |
| >gnl|CDD|217235 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain | Back alignment and domain information |
|---|
Score = 254 bits (650), Expect = 3e-84
Identities = 99/170 (58%), Positives = 117/170 (68%), Gaps = 13/170 (7%)
Query: 225 LAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAAL 284
LAP KVL+ F GI KG MTT H+YT DQ+L+D SH+DLRR RAAA
Sbjct: 1 LAPLAKVLNDNF-------------GIEKGLMTTVHAYTADQKLVDPSHKDLRRGRAAAP 47
Query: 285 NIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRE 344
NI+PTSTGAAKAV LVLP LKGKL G+A RVPTPNVSVVDL V++ K EEVNAA +E
Sbjct: 48 NIIPTSTGAAKAVGLVLPELKGKLTGMAFRVPTPNVSVVDLTVELEKPVTVEEVNAALKE 107
Query: 345 SADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWY 394
+A+ LKGIL +EPLVS DF SS D+ T+V+ + VKV+AWY
Sbjct: 108 AAEGALKGILGYTEEPLVSSDFVGDPHSSIFDAKATIVLNGNFVKVVAWY 157
|
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold. Length = 157 |
| >gnl|CDD|215675 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 228 bits (585), Expect = 1e-74
Identities = 80/151 (52%), Positives = 106/151 (70%), Gaps = 3/151 (1%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR LR + D LEVVAIND + ++LLKYDS G F+ +V+
Sbjct: 1 IKVGINGFGRIGRLVLRAALAQDD--LEVVAINDLTDPETLAYLLKYDSVHGRFDGEVEV 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
DG+ V+GK I+V + R+P LPWG+LG+D+V+E TGVF E A H++AGAKKV+I
Sbjct: 59 DE-DGLIVNGKKIKVFAERDPAELPWGELGVDIVVESTGVFTTAEKAEAHLKAGAKKVII 117
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNAS 219
+AP K D PT+V GVN + Y P++ I+SNAS
Sbjct: 118 SAPAKDDDPTFVYGVNHEDYDPEDDIVSNAS 148
|
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 148 |
| >gnl|CDD|214851 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 214 bits (548), Expect = 4e-69
Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 3/152 (1%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR LR R D +EVVAIND + ++LLKYDS G F V+
Sbjct: 1 IKVGINGFGRIGRLVLRAALERPD--VEVVAINDLTDPEYLAYLLKYDSVHGRFPGTVE- 57
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V DG+ V+GK I+V + R+P NLPWG+LG+D+V+E TG F RE A H++AGAKKV+I
Sbjct: 58 VEGDGLVVNGKAIKVFAERDPANLPWGELGVDIVVECTGGFTTREKASAHLKAGAKKVII 117
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASC 220
+AP K PT+V GVN D Y ++ IISNASC
Sbjct: 118 SAPSKDADPTFVYGVNHDEYDGEDHIISNASC 149
|
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 149 |
| >gnl|CDD|173546 PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 7e-33
Identities = 93/351 (26%), Positives = 164/351 (46%), Gaps = 32/351 (9%)
Query: 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPV 129
V INGFG +G+ L + D + VVA+ND + +++L+ +S L + V
Sbjct: 5 VGINGFGPVGKAVL--FASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRV 62
Query: 130 GTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ I ++G + I+V + + V + W D G+ V+E TG++ R H+ GAK V +
Sbjct: 63 VGEQIVLNGTQKIRVSAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFV 122
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
A D PT + G N + P+ + LAP ++ L + +
Sbjct: 123 -AGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAPVIRALHEVY------------ 169
Query: 249 AGIIKGTMTTTHSYTGDQRLLDA---SHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305
G+ + + T H Q + A + +D R+ R A I P A+ V +LP L
Sbjct: 170 -GVEECSYTAIHG-MQPQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLV 227
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
G+++G A +VP +D++V+ + E V++A E+A + L G+L + ++SVD
Sbjct: 228 GRISGSAFQVPVKKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVD 287
Query: 366 F-----RCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIV 411
C D +S+ SS ++ K++ W+D E Y+ R++ L +
Sbjct: 288 CIPNGKLCYDATSS--SSSR---EGEVHKMVLWFDVECYYAARLLSLVKQL 333
|
Length = 342 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 416 | |||
| PLN02237 | 442 | glyceraldehyde-3-phosphate dehydrogenase B | 100.0 | |
| PLN03096 | 395 | glyceraldehyde-3-phosphate dehydrogenase A; Provis | 100.0 | |
| PTZ00434 | 361 | cytosolic glyceraldehyde 3-phosphate dehydrogenase | 100.0 | |
| PRK07403 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 100.0 | |
| PRK15425 | 331 | gapA glyceraldehyde-3-phosphate dehydrogenase A; P | 100.0 | |
| PTZ00023 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 100.0 | |
| PRK07729 | 343 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 100.0 | |
| COG0057 | 335 | GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt | 100.0 | |
| PLN02272 | 421 | glyceraldehyde-3-phosphate dehydrogenase | 100.0 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 100.0 | |
| PTZ00353 | 342 | glycosomal glyceraldehyde-3-phosphate dehydrogenas | 100.0 | |
| PLN02358 | 338 | glyceraldehyde-3-phosphate dehydrogenase | 100.0 | |
| PRK08955 | 334 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 100.0 | |
| PRK08289 | 477 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 100.0 | |
| TIGR01534 | 327 | GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, | 100.0 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 100.0 | |
| KOG0657 | 285 | consensus Glyceraldehyde 3-phosphate dehydrogenase | 100.0 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 100.0 | |
| PF02800 | 157 | Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, | 100.0 | |
| PF00044 | 151 | Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, | 100.0 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 100.0 | |
| smart00846 | 149 | Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, | 100.0 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 100.0 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 100.0 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 100.0 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 100.0 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 100.0 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 100.0 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 100.0 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 99.96 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 99.96 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 99.96 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 99.95 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 99.95 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 99.9 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 99.86 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 99.86 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 99.76 | |
| KOG4777 | 361 | consensus Aspartate-semialdehyde dehydrogenase [Am | 99.63 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 99.61 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 99.48 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 99.24 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 98.9 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 98.75 | |
| PF02774 | 184 | Semialdhyde_dhC: Semialdehyde dehydrogenase, dimer | 98.59 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 98.09 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 98.07 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.92 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.67 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.53 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.36 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.35 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.27 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.23 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 97.18 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.16 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.98 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.95 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 96.92 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 96.86 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 96.72 | |
| PRK06813 | 346 | homoserine dehydrogenase; Validated | 96.7 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 96.59 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.52 | |
| KOG4354 | 340 | consensus N-acetyl-gamma-glutamyl-phosphate reduct | 96.35 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 96.28 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 96.16 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.08 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 95.92 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 95.86 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 95.83 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 95.54 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 95.44 | |
| PLN02696 | 454 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | 95.02 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 94.96 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 94.93 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 94.75 | |
| PLN02700 | 377 | homoserine dehydrogenase family protein | 94.68 | |
| PLN02477 | 410 | glutamate dehydrogenase | 94.54 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 94.34 | |
| COG4569 | 310 | MhpF Acetaldehyde dehydrogenase (acetylating) [Sec | 94.05 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 93.98 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 93.71 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 93.69 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 93.65 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 93.35 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 93.03 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 92.89 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 92.88 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 92.66 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 92.53 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 92.44 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 92.42 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 92.35 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 92.13 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 92.04 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 91.97 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 91.78 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 91.72 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 91.67 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 91.6 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 91.52 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 91.38 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 91.36 | |
| PLN02928 | 347 | oxidoreductase family protein | 91.19 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 91.16 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 91.1 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 90.84 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 90.76 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 90.74 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 90.62 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 90.6 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 90.59 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 90.39 | |
| PLN02494 | 477 | adenosylhomocysteinase | 90.26 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 90.02 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 89.98 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 89.97 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 89.87 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 89.84 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 89.79 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 89.61 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 89.55 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 89.41 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 89.29 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 89.07 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 89.07 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 89.05 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 88.95 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 88.83 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 88.76 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 88.65 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.56 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 88.5 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 88.4 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 88.31 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 88.27 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 88.12 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 87.83 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 87.74 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 86.15 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 86.05 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 85.99 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 85.9 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 85.82 | |
| PLN02712 | 667 | arogenate dehydrogenase | 85.75 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 85.69 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 85.68 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 85.58 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 85.28 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 85.28 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 85.26 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 85.16 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 84.9 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 84.75 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 84.72 | |
| PLN02256 | 304 | arogenate dehydrogenase | 84.7 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 84.55 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 84.29 | |
| PLN00106 | 323 | malate dehydrogenase | 84.18 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 83.88 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 83.59 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 83.0 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 82.98 | |
| PLN02712 | 667 | arogenate dehydrogenase | 82.73 | |
| PF12338 | 45 | RbcS: Ribulose-1,5-bisphosphate carboxylase small | 82.02 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 81.74 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 81.52 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 81.47 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 81.46 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 81.03 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 80.8 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 80.77 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 80.52 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 80.42 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 80.33 |
| >PLN02237 glyceraldehyde-3-phosphate dehydrogenase B | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-129 Score=993.38 Aligned_cols=384 Identities=76% Similarity=1.166 Sum_probs=368.4
Q ss_pred CcccccccccccCCCCCcCCC-CCcchhhhhhhhhccCCCcccccccccccceeEEEEccChhHHHHHHHHHhCCCCCce
Q 014890 18 KGFSEFSGLRNSASLPFGRKS-SDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLE 96 (416)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~ 96 (416)
-.|++|+|||+++++++++.. +.+|++.++.|+.++.++ +.+.+..++|++||||||||||||+++|++++++++++|
T Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ikVgINGFGRIGR~vlR~~~~~~~~~ie 103 (442)
T PLN02237 25 LEVAEFSGLRASSCVTFAKNAREASFFDVVASQLAPKVAG-STPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLD 103 (442)
T ss_pred ccccccccccccccccccccccchhHHHHhhhhhhhhhcc-cccccccccceEEEEEECCChHHHHHHHHHHHccCCCeE
Confidence 469999999999999998765 788999999999988887 888999999999999999999999999999876334699
Q ss_pred EEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHH
Q 014890 97 VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAG 176 (416)
Q Consensus 97 vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~ 176 (416)
||||||+.++++++|||||||+||+|+++|+..+++.|.|+|++|+++++++|.++||+++|+||||||||.|+++++++
T Consensus 104 vVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~ 183 (442)
T PLN02237 104 VVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAG 183 (442)
T ss_pred EEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEcCCchhCChhhcCCCEEEEccChhhhHHHHH
Confidence 99999999999999999999999999999983388999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEcCCCCC-CCCeEEeecCccCCCCC-CCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEE
Q 014890 177 KHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKG 254 (416)
Q Consensus 177 ~hl~aGAkkVIIsapskd-~~ptvV~gVN~~~y~~~-~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~ 254 (416)
+|+++|||||+||+|.++ ++||||||||++.|++. ++||||||||||||+|++|+||++| ||+++
T Consensus 184 ~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTTNcLAPvlkvL~d~f-------------GI~~g 250 (442)
T PLN02237 184 KHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTNCLAPFVKVLDEEF-------------GIVKG 250 (442)
T ss_pred HHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHHHHHHHHHHHHHHhc-------------CeeEE
Confidence 999999999999999987 58999999999999886 7899999999999999999999999 99999
Q ss_pred EEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEcc-CC
Q 014890 255 TMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSK-KT 333 (416)
Q Consensus 255 ~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k-~v 333 (416)
+|||||+||++|+++|.+|+||||+|+|++||||++||++|++.+|||+|+|||+|+++||||++||++||+++++| ++
T Consensus 251 ~mTTvHs~T~dQ~~~D~~h~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~RVPt~nvS~vDLt~~l~k~~~ 330 (442)
T PLN02237 251 TMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGI 330 (442)
T ss_pred EEEEEEeccCCcccccCCCcccccccccccccccCCcchhhhhceecccCCCceeeEEEecccCCceEEEEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCceEEEEEEecCCcchhhhHhHHHHHHhh
Q 014890 334 FAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413 (416)
Q Consensus 334 s~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~~vK~~~WyDNE~gys~R~vdl~~~~~~ 413 (416)
++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++||||||||||||+||+.||.+
T Consensus 331 t~eein~~~k~aa~~~lkgil~y~~~plVS~Df~~~~~Ssi~D~~~t~v~~~~~vKv~aWYDNEwGys~R~~dl~~~~~~ 410 (442)
T PLN02237 331 TAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAA 410 (442)
T ss_pred CHHHHHHHHHHhhccccCCeeeeeCCceeeeeecCCCcceEEEcccCEEeCCCEEEEEEEeCCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 014890 414 NW 415 (416)
Q Consensus 414 ~~ 415 (416)
+|
T Consensus 411 ~~ 412 (442)
T PLN02237 411 KW 412 (442)
T ss_pred hh
Confidence 64
|
|
| >PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-125 Score=960.90 Aligned_cols=394 Identities=86% Similarity=1.314 Sum_probs=374.5
Q ss_pred ccccccccccCCCcccccccccccCCCCCcCCC-CCcchhhhhhhhhccCCCcccccccccccceeEEEEccChhHHHHH
Q 014890 6 LSVAKSALQGNGKGFSEFSGLRNSASLPFGRKS-SDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFL 84 (416)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ikVaINGfGrIGR~vl 84 (416)
++++++++|+.+++|++|+|||++++.++++.. +++| ++.|+.++.++ ..+.+..++|++||||||||||||.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~kVaInGfGrIGR~vl 76 (395)
T PLN03096 1 FSAAKPSLQAGSKGFSEFSGLKSSSAVTFGKRSDSLDF---VVFATSAVSSS-GGARRAVTEAKIKVAINGFGRIGRNFL 76 (395)
T ss_pred CCccchhhhcccCcccccccccccCcccccccccchhh---hhhhhhhhhcc-ccccccccccccEEEEECcCHHHHHHH
Confidence 367889999999999999999998888887655 4445 77777777666 778889999999999999999999999
Q ss_pred HHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCCCCCCCCCccccEEEc
Q 014890 85 RCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIE 164 (416)
Q Consensus 85 r~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p~~i~W~~~gvDiVie 164 (416)
|+|++++.+.++||||||+.++++++|||+|||+||+|+++|+..+++.|.|+|++|++++++||+++||+++|+|||||
T Consensus 77 r~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~~~~w~~~gvDiVie 156 (395)
T PLN03096 77 RCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIE 156 (395)
T ss_pred HHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcccccccccCCCEEEE
Confidence 99998754569999999999999999999999999999999974578999999999999999999999999999999999
Q ss_pred CCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHHHHHHHHHHhhhhccccc
Q 014890 165 GTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRI 244 (416)
Q Consensus 165 ~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~ 244 (416)
|||.|.+++++++|+++|||||+||+|.++++||||||||++.|+++++||||||||||||+|++|+||++|
T Consensus 157 ~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~LAp~lkvL~~~f-------- 228 (395)
T PLN03096 157 GTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCLAPFVKVLDQKF-------- 228 (395)
T ss_pred CcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHHHHHHHHHHHHhc--------
Confidence 999999999999999999999999999887889999999999998878999999999999999999999999
Q ss_pred cccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccCCeeeEEEeeCcccceEEE
Q 014890 245 FPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVD 324 (416)
Q Consensus 245 ~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vd 324 (416)
||++++|||||+||++|+++|.+|+|+||+|++++||||++||++|++++|||+|+|||+|+||||||++||++|
T Consensus 229 -----GI~~g~mTTiHa~T~~Q~llD~~~~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVPv~~gs~~d 303 (395)
T PLN03096 229 -----GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVD 303 (395)
T ss_pred -----CeeEEEEEEEEccccccccccCCCCccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEccccceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCceEEEEEEecCCcchhhhH
Q 014890 325 LVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRV 404 (416)
Q Consensus 325 l~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~~vK~~~WyDNE~gys~R~ 404 (416)
|++++++++++||||++|+++++++|||||+|+++|+||+||+|++||+|||+.+|++++++|+|+++||||||||||||
T Consensus 304 ltv~~~~~~t~eev~~al~~aa~~~l~gil~~~~~p~VS~Df~~~~~Ssi~d~~~t~v~~~~~vKv~~WYDNE~Gys~r~ 383 (395)
T PLN03096 304 LVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRV 383 (395)
T ss_pred EEEEECCCCCHHHHHHHHHhhhhccccceEEEeCCCEeeeeecCCCCceEEEcccCEEeCCCEEEEEEEecCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCC
Q 014890 405 VDLADIVANNWK 416 (416)
Q Consensus 405 vdl~~~~~~~~~ 416 (416)
+||+.+|.++|+
T Consensus 384 ~dl~~~~~~~~~ 395 (395)
T PLN03096 384 VDLADIVANKWK 395 (395)
T ss_pred HHHHHHHHhhcC
Confidence 999999988763
|
|
| >PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-125 Score=944.32 Aligned_cols=336 Identities=47% Similarity=0.786 Sum_probs=321.8
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCC--CCCceEEEEec-CCChhHHhhhhccccccccCCCceeee--------cCCeE
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRK--DSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPV--------GTDGI 134 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~--~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~--------~~~~i 134 (416)
.|++||||||||||||.++|+++++. .++++|||||| +.++++++|||||||+||+|+++|+ . +++.|
T Consensus 1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~-~~~~~~~~~~~~~l 79 (361)
T PTZ00434 1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVE-TTKSSPSVKTDDVL 79 (361)
T ss_pred CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCcee-ecccccccccCCEE
Confidence 36789999999999999999988752 24599999999 7899999999999999999999998 6 78999
Q ss_pred EECCEEEEEE-eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCC-CC
Q 014890 135 SVDGKVIQVV-SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DE 212 (416)
Q Consensus 135 ~v~G~~I~v~-~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~-~~ 212 (416)
.|||++|.++ +++||.+|||+++|+||||||||.|++++.+..||++||||||||||++++.|||||||||+.|++ .+
T Consensus 80 ~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~ 159 (361)
T PTZ00434 80 VVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEH 159 (361)
T ss_pred EECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccC
Confidence 9999999986 999999999999999999999999999999999999999999999999875689999999999998 47
Q ss_pred CeEecCCcchhhhHHHHHHH-HHHhhhhccccccccccceeEEEEEeecccccchhhhccc-hhHHHhhhccccccccCC
Q 014890 213 PIISNASCTTNCLAPFVKVL-DQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTS 290 (416)
Q Consensus 213 ~IISnaSCTTn~Lap~lkvL-~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~-~~d~rr~Raaa~NIIPt~ 290 (416)
+||||+|||||||||++|+| ||+| ||++|+|||||+||++|+++|.+ |+||||+|+|++||||++
T Consensus 160 ~IiSnASCTTNcLAP~~kvL~~~~f-------------GI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPts 226 (361)
T PTZ00434 160 HVVSNASCTTNCLAPIVHVLTKEGF-------------GIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPST 226 (361)
T ss_pred cEEECCChHHHhhHHHHHHhhcCCc-------------ceEEEEEEEEecccCCcccccCcCcccccccccccccCccCC
Confidence 89999999999999999999 7999 99999999999999999999988 699999999999999999
Q ss_pred CChHHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCC
Q 014890 291 TGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSD 370 (416)
Q Consensus 291 tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~ 370 (416)
||+||++++|||+|+|||+|+|+||||++||++||+++++|++++||||++|++|++++|||||+|+|+|+||+||+|++
T Consensus 227 TGAAkAv~~VlP~L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~~lkgIl~y~~~plVS~Df~g~~ 306 (361)
T PTZ00434 227 TGAAKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVSADFINDN 306 (361)
T ss_pred cchhhhhceeccccCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhccccCcccccCCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeCCCCcccC----CceEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 014890 371 VSSTVDSSLTLVMG----DDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415 (416)
Q Consensus 371 ~S~i~D~~~t~v~~----~~~vK~~~WyDNE~gys~R~vdl~~~~~~~~ 415 (416)
||+|||+.+|++++ ++++|+++||||||||||||+||+.+|.+.+
T Consensus 307 ~Ssi~D~~~t~v~~~~~~~~~vKv~~WYDNEwGys~Rl~dl~~~~~~~~ 355 (361)
T PTZ00434 307 RSSIYDSKATLQNNLPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAKD 355 (361)
T ss_pred CCeEEEhhhCeEeccCCCCCEEEEEEEecCchHHHHHHHHHHHHHHhcc
Confidence 99999999999996 4899999999999999999999999997654
|
|
| >PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-118 Score=892.48 Aligned_cols=334 Identities=73% Similarity=1.143 Sum_probs=322.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||||||||||+++|+++++++++++||||||+.++++++|||||||+||+|+++++ .+++.|.|+|++|++++++
T Consensus 1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~-~~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADIS-ADENSITVNGKTIKCVSDR 79 (337)
T ss_pred CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEE-EcCCEEEECCEEEEEEEcC
Confidence 379999999999999999988763346999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCC-CCCeEEeecCccCCCCC-CCeEecCCcchhhh
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTNCL 225 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd-~~ptvV~gVN~~~y~~~-~~IISnaSCTTn~L 225 (416)
||+++||+++|+|+||||||.|+++++++.|+++|||||++|+|+++ |+||||||||++.|++. ++||||||||||||
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~L 159 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCL 159 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHHH
Confidence 99999999999999999999999999999999999999999999876 46999999999999864 78999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHccccc
Q 014890 226 APFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305 (416)
Q Consensus 226 ap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~ 305 (416)
+|++|+||++| ||+++.|||||+||++|+++|.+|+||||+|++++||||++||++|++++|||+|+
T Consensus 160 ap~lkvL~~~f-------------gI~~~~mTTiha~T~~q~~~D~~~~d~r~~raaa~NiIPt~tGaakav~~vlP~L~ 226 (337)
T PRK07403 160 APIAKVLHDNF-------------GIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELK 226 (337)
T ss_pred HHHHHHHHHhc-------------CeeEEEEEEEeeecCCcccccccccccccccccccccccCCcchhhhhhhcCcccC
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCC
Q 014890 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGD 385 (416)
Q Consensus 306 gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~ 385 (416)
|||+|+|+||||+++|++||+++++|++++||||++|+++++++|||||+|+++|+||+||+|++||+|||+.+|+++++
T Consensus 227 gki~g~avRVPt~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~ 306 (337)
T PRK07403 227 GKLNGIALRVPTPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDASSIVDASLTMVMGG 306 (337)
T ss_pred CcEEEEEEEeccCCcEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecCCEeeeeecCCCCCEEEEcccCEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 014890 386 DMVKVIAWYDNEWGYSQRVVDLADIVANNW 415 (416)
Q Consensus 386 ~~vK~~~WyDNE~gys~R~vdl~~~~~~~~ 415 (416)
+|+|+++||||||||||||+||+.+|.++.
T Consensus 307 ~~~k~~~WyDNE~Gys~r~~dl~~~~~~~~ 336 (337)
T PRK07403 307 DMVKVIAWYDNEWGYSQRVVDLAELVARKW 336 (337)
T ss_pred CEEEEEEEecCchhHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999998754
|
|
| >PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-117 Score=886.78 Aligned_cols=330 Identities=48% Similarity=0.808 Sum_probs=320.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++||||||||||||.++|++++++ ++|||||||+.++++++|||||||+||+|+++|+ .+++.|.|+|++|.++++
T Consensus 1 m~~~i~inGfGRIGr~~~r~~~~~~--~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~-~~~~~l~v~g~~I~v~~~ 77 (331)
T PRK15425 1 MTIKVGINGFGRIGRIVFRAAQKRS--DIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAE 77 (331)
T ss_pred CceEEEEEeeChHHHHHHHHHHHCC--CCEEEEEecCCCHHHHHHHHccccCCCCcCCcEE-ecCCEEEECCeEEEEEEc
Confidence 5589999999999999999998764 5999999999999999999999999999999999 889999999999999999
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhH
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~La 226 (416)
++|+++||+++|+|+||||||.|+++++|++|+++|||||++|+|+++++|+||||||++.|++ ++||||||||||||+
T Consensus 78 ~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~La 156 (331)
T PRK15425 78 RDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLA 156 (331)
T ss_pred CChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999998777899999999999975 789999999999999
Q ss_pred HHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccc-hhHHHhhhccccccccCCCChHHHHHHHccccc
Q 014890 227 PFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305 (416)
Q Consensus 227 p~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~-~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~ 305 (416)
|++|+||++| ||+++.|||||+||++|+++|.+ |+|+||+|++++||||++||+++++++|||+|+
T Consensus 157 pvlk~L~~~f-------------gI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~ 223 (331)
T PRK15425 157 PLAKVINDNF-------------GIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELN 223 (331)
T ss_pred HHHHHHHHhC-------------CeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccC
Confidence 9999999999 99999999999999999999966 689999999999999999999999999999999
Q ss_pred CCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCC
Q 014890 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGD 385 (416)
Q Consensus 306 gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~ 385 (416)
|||+|+|+||||++||++||++++++++++||||++|+++++++|||||+|+++|+||+||+|++||+|||+.+|+++++
T Consensus 224 gkl~g~avRVPv~~gs~~dltv~l~~~~t~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~ssi~d~~~t~v~~~ 303 (331)
T PRK15425 224 GKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALND 303 (331)
T ss_pred CeEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhhccccccccccCCcEeeeecCCCCcceEEEcccCEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCcchhhhHhHHHHHHhh
Q 014890 386 DMVKVIAWYDNEWGYSQRVVDLADIVAN 413 (416)
Q Consensus 386 ~~vK~~~WyDNE~gys~R~vdl~~~~~~ 413 (416)
+++|+++||||||||||||+||+.+|.+
T Consensus 304 ~~~k~~~WyDNE~gys~r~~d~~~~~~~ 331 (331)
T PRK15425 304 NFVKLVSWYDNETGYSNKVLDLIAHISK 331 (331)
T ss_pred CEEEEEEEecCchhHHHHHHHHHHHHhC
Confidence 9999999999999999999999999853
|
|
| >PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-117 Score=886.96 Aligned_cols=333 Identities=47% Similarity=0.788 Sum_probs=323.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
|++||||||||||||.++|++++++ +++|||||| +.++++++|||||||+||+|+++|+ .+++.|.|||++|++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~~--~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~-~~~~~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALERE--DVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVS-VTDGFLMIGSKKVHVFF 77 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhcC--CeEEEEecCCCCChHHhhhhheeecCCCCCCCcEE-ecCCEEEECCeEEEEEe
Confidence 5689999999999999999998764 499999999 6899999999999999999999999 89999999999999999
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhh
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 225 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~L 225 (416)
++||.++||++.|+|+||||||.|+++++++.|+++|||||++|+|.++++|+||||||++.|++.++||||||||||||
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~L 157 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCL 157 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHH
Confidence 99999999999999999999999999999999999999999999998877899999999999987788999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccc---hhHHHhhhccccccccCCCChHHHHHHHcc
Q 014890 226 APFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDAS---HRDLRRARAAALNIVPTSTGAAKAVALVLP 302 (416)
Q Consensus 226 ap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~---~~d~rr~Raaa~NIIPt~tGaakav~kVlP 302 (416)
+|++|+||++| ||+++.|||||+||++|.++|.+ ++||||+|++++||||++||++|++++|||
T Consensus 158 ap~lk~L~~~f-------------gI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlP 224 (337)
T PTZ00023 158 APLAKVVNDKF-------------GIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIP 224 (337)
T ss_pred HHHHHHHHHhc-------------CeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheec
Confidence 99999999999 99999999999999999999965 589999999999999999999999999999
Q ss_pred cccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcc
Q 014890 303 ALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLV 382 (416)
Q Consensus 303 eL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v 382 (416)
+|+|||+|+|+||||+++|++||++++++++++|||+++|+++++++|||||+|+++|+||+||+|++||+|||+.+|++
T Consensus 225 eL~gkl~g~avRVPt~~~s~~dltv~l~k~vt~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~v 304 (337)
T PTZ00023 225 ELNGKLTGMAFRVPVPDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKRSSIFDVKAGIA 304 (337)
T ss_pred ccCCcEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhcccccCCcCccCCCeeeeecCCCCCCeEEEcccCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 014890 383 MGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415 (416)
Q Consensus 383 ~~~~~vK~~~WyDNE~gys~R~vdl~~~~~~~~ 415 (416)
++++|+|+++||||||||||||+||+.+|.+|+
T Consensus 305 ~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~~~ 337 (337)
T PTZ00023 305 LNDTFVKLVSWYDNEWGYSNRLLDLAHYITQKY 337 (337)
T ss_pred ecCCEEEEEEEecCchhHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999998764
|
|
| >PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-116 Score=883.06 Aligned_cols=333 Identities=57% Similarity=0.891 Sum_probs=322.8
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++||||||||||||.++|++++++ +++||||||+.++++++|||||||+||+|+++|+ .+++.|.|+|++|+++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~~--~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~-~~~~~l~v~g~~I~v~~~ 77 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKES--AFEIVAINASYPSETLAHLIKYDTVHGKFDGTVE-AFEDHLLVDGKKIRLLNN 77 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhcC--CcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEE-ecCCEEEECCEEEEEEEc
Confidence 6789999999999999999998864 4999999999999999999999999999999999 899999999999999999
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCC-CCeEecCCcchhhh
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCL 225 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~-~~IISnaSCTTn~L 225 (416)
++|+++||++.|+||||||||.|+++++++.|+++|||||++|+|++++++++|+|||++.|++. ++||||||||||||
T Consensus 78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~L 157 (343)
T PRK07729 78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCL 157 (343)
T ss_pred CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHH
Confidence 99999999999999999999999999999999999999999999988756677999999999873 78999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHccccc
Q 014890 226 APFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305 (416)
Q Consensus 226 ap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~ 305 (416)
+|++|+||++| ||+++.|||||+||++|+++|.+|+||||+|++++||||++||+++++.+|||+|+
T Consensus 158 ap~lk~L~~~f-------------gI~~~~mTTiha~T~~Q~~~D~~~~d~rr~R~a~~niiPtstgaa~ai~~viP~l~ 224 (343)
T PRK07729 158 APVVKVLDEQF-------------GIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPHLN 224 (343)
T ss_pred HHHHHHHHHhc-------------CeeEEEEEEEecccCcccccccchhhhhcccccccceecCCCcchhhHHHhccccC
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCC
Q 014890 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGD 385 (416)
Q Consensus 306 gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~ 385 (416)
|||+|+|+||||+++|++||+++++|++++||||++|+++++++|||||+|+++|+||+||+|++||+|||+.+|+++++
T Consensus 225 gkl~g~avRVPt~~~s~~dltv~l~k~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~ 304 (343)
T PRK07729 225 GKLHGMALRVPTPNVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGD 304 (343)
T ss_pred CeEEEEEEEeeecCeEEEEEEEEECCCCCHHHHHHHHHHHhhCchhhccCccCCCccccccCCCCcceEEEcccCeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 014890 386 DMVKVIAWYDNEWGYSQRVVDLADIVANNW 415 (416)
Q Consensus 386 ~~vK~~~WyDNE~gys~R~vdl~~~~~~~~ 415 (416)
+++|+++||||||||||||+||+.+|.+++
T Consensus 305 ~~~K~~~WYDNE~Gys~r~~dl~~~~~~~~ 334 (343)
T PRK07729 305 RKVKVLAWYDNEWGYSCRVVDLVTLVADEL 334 (343)
T ss_pred CEEEEEEEecCchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999998764
|
|
| >COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-115 Score=862.81 Aligned_cols=333 Identities=59% Similarity=0.937 Sum_probs=324.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||||||||||+++|++.++++ +||||||||+.+++++||||||||+||+|+++|+ .+++.+.|+|+.|+++.++
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~-dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~-~~~~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDG-DIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVE-VKDDALVVNGKGIKVLAER 78 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCC-CeEEEEEecCCCHHHHHHHHhhcccCCCCCCccc-ccCCeEEECCceEEEEecC
Confidence 4799999999999999999999862 5999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHc-CCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQA-GAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~a-GAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~La 226 (416)
+|++|||+++|+|+|+||||.|+++|.+++|+++ |||||+|+||+++++++||+|||++.|++.+.||||+|||||||+
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLa 158 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLA 158 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhH
Confidence 9999999999999999999999999999999998 599999999999889999999999999988999999999999999
Q ss_pred HHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccC
Q 014890 227 PFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306 (416)
Q Consensus 227 p~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~g 306 (416)
|++|+||++| ||++|+|||+|+||++|+++|.+|+||||+|+|++||||++||+||++++|||+|+|
T Consensus 159 p~~kvl~d~f-------------GI~~g~mTtVh~~T~dQ~~~dgph~~~rr~raa~~niIp~sTgaAkav~~VlP~L~g 225 (335)
T COG0057 159 PVAKVLNDAF-------------GIEKGLMTTVHAYTNDQKLVDGPHKDLRRARAAALNIIPTSTGAAKAVGLVLPELKG 225 (335)
T ss_pred HHHHHHHHhc-------------CeeEEEEEEEEcccCCCccccCcccchhhhccccCCCCcCCCcchhhhhhhCcccCC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCc
Q 014890 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDD 386 (416)
Q Consensus 307 kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~ 386 (416)
||+|+|+||||+++|++||+++++|++++||||++|++++++.|||+++|+|+|+||+||+|++||+|||+++|++++++
T Consensus 226 Kl~g~A~RVPt~~vs~~dl~v~l~k~~t~eeIn~alk~as~~~lkg~~~y~e~~~Vs~D~~~~~~ssI~d~~~t~~~~~~ 305 (335)
T COG0057 226 KLTGMAIRVPTPNVSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASATIVLGGN 305 (335)
T ss_pred ceeeEEEEecCCCcEEEEEEEEeCCCCCHHHHHHHHHHhhcccccceeeeEeccccccccCCCcceeEEEccceEeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 014890 387 MVKVIAWYDNEWGYSQRVVDLADIVANNW 415 (416)
Q Consensus 387 ~vK~~~WyDNE~gys~R~vdl~~~~~~~~ 415 (416)
++|+++||||||||++|++|+..++...+
T Consensus 306 ~vk~~~wydNE~gys~r~vD~~~~~~~~~ 334 (335)
T COG0057 306 LVKLVAWYDNEWGYSNRVVDLLAMVAKAL 334 (335)
T ss_pred EEEEEEEEeccccchHHHHHHHHHHhhhc
Confidence 99999999999999999999988877654
|
|
| >PLN02272 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-113 Score=875.70 Aligned_cols=329 Identities=49% Similarity=0.819 Sum_probs=318.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||||||||||||.++|++.++. +++|||||| ..++++++|||||||+||+|+++|+..+++.|.|+|++|+|++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~--~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRD--DIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcC--CcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 79999999999999999998753 499999999 789999999999999999999999922889999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (416)
+|.++||+++|+||||||||.|+++++++.|+++||||||||+|++ |+|+||||||++.|+++++||||||||||||+|
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~-dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap 242 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSA-DAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAP 242 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCC-CCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999976 489999999999999878999999999999999
Q ss_pred HHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccc-hhHHHhhhccccccccCCCChHHHHHHHcccccC
Q 014890 228 FVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306 (416)
Q Consensus 228 ~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~-~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~g 306 (416)
++|+||++| ||++++|||||+||++|+++|.+ |+|+||+|++++||||++||++|+++||||+|+|
T Consensus 243 ~lk~L~~~f-------------GI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~g 309 (421)
T PLN02272 243 LAKVVHEEF-------------GILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNG 309 (421)
T ss_pred HHHHHHHhC-------------CeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCC
Confidence 999999999 99999999999999999999966 6899999999999999999999999999999999
Q ss_pred CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCc
Q 014890 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDD 386 (416)
Q Consensus 307 kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~ 386 (416)
||+|+||||||++||++||++++++++++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++
T Consensus 310 kl~gtaVRVPv~~gs~~dltv~lek~~s~eev~~alk~a~~~~l~gil~y~~~~lVS~Df~~~~~ssi~D~~~t~~~~~~ 389 (421)
T PLN02272 310 KLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSAS 389 (421)
T ss_pred cEEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHHHhccccccccccccCCEeeeecCCCCCcEEEEcccCeEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCcchhhhHhHHHHHHhh
Q 014890 387 MVKVIAWYDNEWGYSQRVVDLADIVAN 413 (416)
Q Consensus 387 ~vK~~~WyDNE~gys~R~vdl~~~~~~ 413 (416)
++|+++||||||||||||+||+.+|.+
T Consensus 390 ~vKv~~WYDNEwGys~R~~dl~~~~~~ 416 (421)
T PLN02272 390 FMKLVSWYDNEWGYSNRVLDLIEHMAL 416 (421)
T ss_pred EEEEEEEecCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999865
|
|
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-113 Score=855.63 Aligned_cols=331 Identities=43% Similarity=0.725 Sum_probs=320.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCC-CCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRK-DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~-~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||||||||||||.++|+|++++ .+++++|||||+.++++++|||||||+||+|+++++ ++++.|.|+|++|++++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~-~~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVR-QERDQLFVGDDAIRLLHER 80 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEE-ecCCEEEECCEEEEEEEcC
Confidence 69999999999999999999863 246999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCC-CCCCeEEeecCccCCCCCCCeEecCCcchhhhH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapsk-d~~ptvV~gVN~~~y~~~~~IISnaSCTTn~La 226 (416)
+|+++||+++|+|+||||||.|.+++++++|+++|||||++|+|++ +..++||||||++.|++.++||||||||||||+
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~La 160 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNCII 160 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHHHH
Confidence 9999999999999999999999999999999999999999999986 434699999999999987899999999999999
Q ss_pred HHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccC
Q 014890 227 PFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306 (416)
Q Consensus 227 p~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~g 306 (416)
|++|+||++| ||++++|||||+||++|+++|.+|+|+||+|++++||||++||++++++||||+|+|
T Consensus 161 p~lk~L~~~f-------------gI~~~~mTT~ha~t~~Q~~vD~~~~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~g 227 (336)
T PRK13535 161 PVIKLLDDAF-------------GIESGTVTTIHSAMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFND 227 (336)
T ss_pred HHHHHHHHhc-------------CeeEEEEEEEEhhcCCcchhhchhhccccccEeeeccccCccHHHhhhhhcccCCCC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCc
Q 014890 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDD 386 (416)
Q Consensus 307 kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~ 386 (416)
|++++||||||++||++||++++++++++|||+++|+++++++|||||+|+++|+||+||+|++||+|||+.+|++++++
T Consensus 228 kv~~~avRVPv~~gs~~dl~v~~~~~~t~eei~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~ 307 (336)
T PRK13535 228 RFEAISVRVPTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGAH 307 (336)
T ss_pred cEEEEEEEeCccCcEEEEEEEEECCCCCHHHHHHHHHHhhhccccccccccCCCccccccCCCCcceEEEcccCEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCcchhhhHhHHHHHHhh
Q 014890 387 MVKVIAWYDNEWGYSQRVVDLADIVAN 413 (416)
Q Consensus 387 ~vK~~~WyDNE~gys~R~vdl~~~~~~ 413 (416)
++|+++||||||||||||+||+.+|..
T Consensus 308 ~~k~~~WyDNE~gys~r~~d~~~~~~~ 334 (336)
T PRK13535 308 LIKTLVWCDNEWGFANRMLDTTLAMAA 334 (336)
T ss_pred EEEEEEEEcCchHHHHHHHHHHHHHhh
Confidence 999999999999999999999999864
|
|
| >PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-113 Score=855.67 Aligned_cols=329 Identities=27% Similarity=0.470 Sum_probs=315.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCC-CceeeecCCeEEECC-EEEEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFE-ADVKPVGTDGISVDG-KVIQV 143 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~-~~v~~~~~~~i~v~G-~~I~v 143 (416)
|++||||||||||||+++|++++++ ++||||||| +.++++++|||||||+||+|+ ++|+ .+++.|.+|| ++|++
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~~--~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~-~~~~~l~i~g~~~i~~ 77 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTDP--LVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIR-VVGEQIVLNGTQKIRV 77 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhcC--CcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEE-EcCCEEecCCCeEEEE
Confidence 5689999999999999999998864 499999999 689999999999999999996 6898 8899999999 89999
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchh
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTN 223 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn 223 (416)
+++++|+++||+++|+|+||||||.|.+++.+..|+++|||||||++|+++ +||||||||++.|+++++||||||||||
T Consensus 78 ~~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d-~p~vV~gVN~~~~~~~~~IISnaSCTTn 156 (342)
T PTZ00353 78 SAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSAD-APTVMAGSNDERLSASLPVCCAGAPIAV 156 (342)
T ss_pred EecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCC-CCeEEecCChHHcCCCCCEEECCCHHHH
Confidence 999999999999999999999999999999999999999999999999975 8999999999999987889999999999
Q ss_pred hhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhcc-c--hhHHHhhhccccccccCCCChHHHHHHH
Q 014890 224 CLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDA-S--HRDLRRARAAALNIVPTSTGAAKAVALV 300 (416)
Q Consensus 224 ~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~-~--~~d~rr~Raaa~NIIPt~tGaakav~kV 300 (416)
||+|++|+||++| ||++++|||||+|+ +|...|. + |+|+||+|+|++||||++||++++++||
T Consensus 157 ~LapvlkvL~~~f-------------GI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kV 222 (342)
T PTZ00353 157 ALAPVIRALHEVY-------------GVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKL 222 (342)
T ss_pred HHHHHHHHHHHhc-------------CeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhh
Confidence 9999999999999 99999999999997 6888876 3 5999999999999999999999999999
Q ss_pred cccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCC
Q 014890 301 LPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLT 380 (416)
Q Consensus 301 lPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t 380 (416)
||+|+|||+|+|+||||++||++||++++++++++||||++|+++++++|||||+|+|+|+||+||+|++ |+|||+.+|
T Consensus 223 lP~L~gkl~g~avRVPt~~vs~vdltv~~~k~~t~eein~~l~~aa~~~l~gil~~~~~~~VS~Df~~~~-~si~D~~~t 301 (342)
T PTZ00353 223 LPHLVGRISGSAFQVPVKKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNG-KLCYDATSS 301 (342)
T ss_pred ccccCCcEEEEEEEccccCeEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCeEEecCCCeeeeEeCCCC-CeEEEcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 599999999
Q ss_pred ccc-CCceEEEEEEecCCcchhhhHhHHHHHHhhc
Q 014890 381 LVM-GDDMVKVIAWYDNEWGYSQRVVDLADIVANN 414 (416)
Q Consensus 381 ~v~-~~~~vK~~~WyDNE~gys~R~vdl~~~~~~~ 414 (416)
+++ +++++|+++||||||||||||+||+.+|.+.
T Consensus 302 ~~~~~~~~vKv~~WYDNE~Gys~r~~dl~~~~~~~ 336 (342)
T PTZ00353 302 SSSREGEVHKMVLWFDVECYYAARLLSLVKQLHQI 336 (342)
T ss_pred eEEeCCCEEEEEEEecCchHHHHHHHHHHHHHHhc
Confidence 994 8899999999999999999999999999765
|
|
| >PLN02358 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-111 Score=847.31 Aligned_cols=330 Identities=47% Similarity=0.807 Sum_probs=318.3
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCC-ceeee-cCCeEEECCEEEEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEA-DVKPV-GTDGISVDGKVIQV 143 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~-~v~~~-~~~~i~v~G~~I~v 143 (416)
+++||||||||||||..+|.+.+++ ++++||||| ..++++++|||||||+||+|++ +++ . +|+.|.++|++|.+
T Consensus 4 ~~lrVaI~G~GrIGr~~~r~~~~~~--~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~-~~~g~~l~~~g~~i~v 80 (338)
T PLN02358 4 KKIRIGINGFGRIGRLVARVVLQRD--DVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELK-VKDDKTLLFGEKPVTV 80 (338)
T ss_pred CceEEEEEeecHHHHHHHHHHhhCC--CcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEE-ECCCCEEEECCEEEEE
Confidence 3589999999999999999998764 599999999 6899999999999999999996 898 5 67889999999999
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchh
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTN 223 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn 223 (416)
++++||+++||+++|+||||||||.|+++++++.|+++|||||+||+|++| +|+||||||++.|+++++||||||||||
T Consensus 81 ~~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~d-vp~iV~gVN~~~~~~~~~IISnasCTTn 159 (338)
T PLN02358 81 FGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEHEYKSDLDIVSNASCTTN 159 (338)
T ss_pred EEcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCC-CCeEecCcCHHHhCCCCCEEECCCchHH
Confidence 999999999999999999999999999999999999999999999999874 8999999999999887899999999999
Q ss_pred hhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccc-hhHHHhhhccccccccCCCChHHHHHHHcc
Q 014890 224 CLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVALVLP 302 (416)
Q Consensus 224 ~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~-~~d~rr~Raaa~NIIPt~tGaakav~kVlP 302 (416)
||+|++|+||++| ||+++.|||||+||++|+++|.+ ++|+||+|++++||||++||+++++++|||
T Consensus 160 ~Lap~lk~L~~~f-------------gI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP 226 (338)
T PLN02358 160 CLAPLAKVINDRF-------------GIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP 226 (338)
T ss_pred HHHHHHHHHHHhc-------------CeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccc
Confidence 9999999999999 99999999999999999999966 699999999999999999999999999999
Q ss_pred cccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcc
Q 014890 303 ALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLV 382 (416)
Q Consensus 303 eL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v 382 (416)
+|+|||+|+|+||||++||++||++++++++++||||++|+++++++|||||+|+++|+||+||+|++||+|||+.+|++
T Consensus 227 ~l~gkl~g~avRVPv~~gs~~dl~v~~~~~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~ 306 (338)
T PLN02358 227 SLNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIA 306 (338)
T ss_pred cCCCcEEEEEEEeeEcCeeEEEEEEEECCCCCHHHHHHHHHHHhhccccCcccccCCceeeeecCCCCcceEEEcccCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEecCCcchhhhHhHHHHHHhh
Q 014890 383 MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413 (416)
Q Consensus 383 ~~~~~vK~~~WyDNE~gys~R~vdl~~~~~~ 413 (416)
++++++|+++||||||||||||+||+.+|.+
T Consensus 307 ~~~~~vk~~~WyDNE~gys~r~~dl~~~~~~ 337 (338)
T PLN02358 307 LSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337 (338)
T ss_pred ecCCEEEEEEEecCchhHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999864
|
|
| >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-112 Score=848.42 Aligned_cols=329 Identities=46% Similarity=0.761 Sum_probs=319.2
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
|++||||||||||||.++|++.+++ +++||+||| +.++++++|||||||+||+|+++++ ++|+.|.++|++|++++
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~~--~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~-~~g~~l~~~g~~i~v~~ 77 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDWP--ELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVT-AEGDAIVINGKRIRTTQ 77 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEE-EcCCEEEECCEEEEEEe
Confidence 5689999999999999999998864 499999999 7899999999999999999999999 89999999999999999
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCC-CCCeEEeecCccCCCCC-CCeEecCCcchh
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTN 223 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd-~~ptvV~gVN~~~y~~~-~~IISnaSCTTn 223 (416)
+++|+++||+ |+|+||||||.|.++++|+.|+++|||||++|+|+++ ++||||||||++.|+++ ++||||||||||
T Consensus 78 ~~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn 155 (334)
T PRK08955 78 NKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTN 155 (334)
T ss_pred cCChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHH
Confidence 9999999997 9999999999999999999999999999999999876 57999999999999984 789999999999
Q ss_pred hhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHccc
Q 014890 224 CLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPA 303 (416)
Q Consensus 224 ~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPe 303 (416)
||+|++|+||++| ||++++|||||+||++|+++|.+|+|+||+|++++||||++||+++++++|||+
T Consensus 156 ~Lap~lk~L~~~f-------------gI~~~~mTTvha~t~~q~lld~~~~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~ 222 (334)
T PRK08955 156 CLAPVVKVIHEKL-------------GIKHGSMTTIHDLTNTQTILDAPHKDLRRARACGMSLIPTTTGSATAITEIFPE 222 (334)
T ss_pred HHHHHHHHHHHhc-------------CeeEEEEEEEEeccCccccccCCCcccccchhheeccccccCCCccccceEccc
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCccc
Q 014890 304 LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVM 383 (416)
Q Consensus 304 L~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~ 383 (416)
|+||++|+|+||||++||++||++++++++++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|+++
T Consensus 223 L~gkl~~~avRVPv~~gs~~dl~v~~~~~~s~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~ 302 (334)
T PRK08955 223 LKGKLNGHAVRVPLANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVDALSTMVV 302 (334)
T ss_pred cCCcEEEEEEEeccCCeEEEEEEEEECCCCCHHHHHHHHHHhcCCCcCceeccccCCcccceeCCCCchHheehhcCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEecCCcchhhhHhHHHHHHhh
Q 014890 384 GDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413 (416)
Q Consensus 384 ~~~~vK~~~WyDNE~gys~R~vdl~~~~~~ 413 (416)
+++++|+++||||||||||||+||+.+|..
T Consensus 303 ~~~~~k~~~WyDNE~gys~r~~dl~~~~~~ 332 (334)
T PRK08955 303 NGTQVKLYAWYDNEWGYANRTAELARKVGL 332 (334)
T ss_pred cCCEEEEEEEeCCchhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999864
|
|
| >PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-111 Score=867.46 Aligned_cols=333 Identities=41% Similarity=0.659 Sum_probs=319.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCC--CCceEEEEe----cCCChhHHhhhhccccccccCCCceeeec--CCeEEECCE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKD--SPLEVVAIN----DTGGVKQASHLLKYDSTLGIFEADVKPVG--TDGISVDGK 139 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~--~~~~vVaIN----d~~~~~~~a~LlkyDS~~G~f~~~v~~~~--~~~i~v~G~ 139 (416)
+.||||||||||||+++|+++++.. ++++||||| |+.++++++|||||||+||+|+++++ .+ ++.|.+||+
T Consensus 127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~-~~~~~~~liing~ 205 (477)
T PRK08289 127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTIT-VDEENNAIIANGN 205 (477)
T ss_pred CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceE-eecCCCEEEECCE
Confidence 5699999999999999999987621 359999995 68899999999999999999999998 55 789999999
Q ss_pred EEEEEeccCCCCCCCCCcccc--EEEcCCCCCCCHhhHHHHHH-cCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEe
Q 014890 140 VIQVVSNRNPVNLPWGDLGID--LVIEGTGVFVDREGAGKHIQ-AGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIIS 216 (416)
Q Consensus 140 ~I~v~~~~~p~~i~W~~~gvD--iVie~TG~f~s~~~a~~hl~-aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IIS 216 (416)
.|+++++++|+++||+++|+| +||||||.|.+++.+.+||+ +||||||||||+|+++|+||||||++.|+++++|||
T Consensus 206 ~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~IIS 285 (477)
T PRK08289 206 YIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVS 285 (477)
T ss_pred EEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEEE
Confidence 999999999999999999999 99999999999999999999 899999999999988899999999999987788999
Q ss_pred cCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHH
Q 014890 217 NASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKA 296 (416)
Q Consensus 217 naSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaaka 296 (416)
|||||||||+|++|+||++| ||+++.|||||+||++|+++|.+|+|+||+|++++||||++||++|+
T Consensus 286 nASCTTN~LaPvlKvL~d~f-------------GI~~g~mTTvHa~T~dQ~lvD~~hkd~RrgRaaa~NIIptsTGAAkA 352 (477)
T PRK08289 286 AASCTTNAITPVLKAVNDKY-------------GIVNGHVETVHSYTNDQNLIDNYHKGDRRGRSAPLNMVITETGAAKA 352 (477)
T ss_pred CCccHHHHHHHHHHHHHHhc-------------CeeEEEEEEEecccCChHHhhhhhhcCcccceeeeeeEecCCChhhh
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcc-cccCCCcccccCC-CeeeeccCCCCccee
Q 014890 297 VALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA-DNELKGILSVCDE-PLVSVDFRCSDVSST 374 (416)
Q Consensus 297 v~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa-~~~lkgil~~~~~-p~VS~Df~g~~~S~i 374 (416)
+++|||+|+|||+|+|+||||++||++||++++++++++||||++|++++ +++|+|||+|+++ |+||+||+|++||+|
T Consensus 353 v~kVLP~L~GKltg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~L~gil~yt~~~~lVSsDfig~~~SsI 432 (477)
T PRK08289 353 VAKALPELAGKLTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGSRHAGV 432 (477)
T ss_pred hhhcccccCCcEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCCccceeeecccCCeeeeeecCCCchhh
Confidence 99999999999999999999999999999999999999999999999999 5999999999999 799999999999999
Q ss_pred eeCCCCcccCCceEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 014890 375 VDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415 (416)
Q Consensus 375 ~D~~~t~v~~~~~vK~~~WyDNE~gys~R~vdl~~~~~~~~ 415 (416)
||+.+|+++ ++++|+++||||||||||||+||+.+|.+..
T Consensus 433 ~D~~~T~v~-g~~vkv~~WYDNE~GYS~rvvdl~~~~~~~~ 472 (477)
T PRK08289 433 VDSQATIVN-GNRAVLYVWYDNEFGYSCQVVRVMEQMAGVR 472 (477)
T ss_pred eehhccEEc-CCEEEEEEEecCchhHHHHHHHHHHHHHhcc
Confidence 999999999 6899999999999999999999999998753
|
|
| >TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-111 Score=842.32 Aligned_cols=323 Identities=62% Similarity=0.958 Sum_probs=312.4
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCC-eEEECCE-EEEEEecc
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTD-GISVDGK-VIQVVSNR 147 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~-~i~v~G~-~I~v~~~~ 147 (416)
||||||||||||.++|++++++.++++||||||+.++++++|||||||+||+|+++|+ .+++ .|.|+|+ .|.+++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~-~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVT-ADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEE-ecCCceEEECCeEEEEEEecC
Confidence 7999999999999999999863235999999999999999999999999999999999 7888 8999999 99999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (416)
+|.++||+++|+||||||||.|+++++|+.|+++|||||++|+|+++++||||||||++.|++.++||||||||||||+|
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~Lap 159 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLAP 159 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999876689999999999998778899999999999999
Q ss_pred HHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccCC
Q 014890 228 FVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307 (416)
Q Consensus 228 ~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gk 307 (416)
++|+||++| ||+++.|||||+||++|+++|.+++|+|++|++++||||++||+++++++|||+|+||
T Consensus 160 ~lk~L~~~f-------------gI~~~~~TTiha~t~~q~lld~~~~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gk 226 (327)
T TIGR01534 160 LAKVLDEAF-------------GIVSGLMTTVHSYTNDQNLVDGPHKDLRRARAAALNIIPTSTGAAKAIGKVLPELAGK 226 (327)
T ss_pred HHHHHHHhc-------------CeeEEEEEEEEeecCccccccCCCCCCcCceEeEeeeeccCCChHHHHhhccccCCCe
Confidence 999999999 9999999999999999999998889999999999999999999999999999999999
Q ss_pred eeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCccc--CC
Q 014890 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVM--GD 385 (416)
Q Consensus 308 l~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~--~~ 385 (416)
|+++|+||||++||++||++++++++++|||+++|+++++++|||||+|+++|+||+||+|++||+|||+.+|+++ |+
T Consensus 227 v~~~avRVPv~~gs~~dl~v~~~~~~t~eev~~al~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~ 306 (327)
T TIGR01534 227 LTGMAIRVPTPNVSLVDLVLNLEKDTTKEEVNAALKEAAEGSLKGVLGYTEDELVSSDFIGSPYSSIVDATATKVTGLGG 306 (327)
T ss_pred EEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHhhhhcccCceeeeeCCCeeeeecCCCCcceEEEcccCeEEcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999995 48
Q ss_pred ceEEEEEEecCCcchhhhHhH
Q 014890 386 DMVKVIAWYDNEWGYSQRVVD 406 (416)
Q Consensus 386 ~~vK~~~WyDNE~gys~R~vd 406 (416)
+++|+++||||||||||||+|
T Consensus 307 ~~~k~~~WyDNE~gys~r~~d 327 (327)
T TIGR01534 307 SLVKVVAWYDNEWGYSNRVVD 327 (327)
T ss_pred CEEEEEEEeCCCceeeeEccC
Confidence 999999999999999999987
|
The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. |
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-109 Score=823.69 Aligned_cols=323 Identities=45% Similarity=0.770 Sum_probs=313.3
Q ss_pred eEEEEccChhHHHHHHHHHhCC-CCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 70 KVAINGFGRIGRNFLRCWHGRK-DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~-~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
||||||||||||.++|++++++ +++++||+|||+.+.++++|||||||+||+|+++++ ++++.|.|+|+.|+++++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~-~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVK-VDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEE-EeCCEEEECCeEEEEEEcCC
Confidence 6999999999999999999874 346999999999999999999999999999999999 89999999999999999999
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCC-CCCCeEEeecCccCCCCCCCeEecCCcchhhhHH
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapsk-d~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (416)
|+++||+++|+|+||||||.|.+++++++|+++|||+|++|+|.+ +..+|||||||++.|++.++||||||||||||+|
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~lap 159 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCIVP 159 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHHHH
Confidence 999999999999999999999999999999999999999999976 3345999999999998778999999999999999
Q ss_pred HHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccCC
Q 014890 228 FVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307 (416)
Q Consensus 228 ~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gk 307 (416)
++|+||++| ||+++.|||||+||++|+++|.+|+|+||+|+|++||||++||++++++||||+|+||
T Consensus 160 ~lk~L~~~f-------------gI~~~~~tTvha~t~~q~~vD~~~~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gk 226 (325)
T TIGR01532 160 LIKLLDDAI-------------GIESGTITTIHSAMNDQQVIDAYHHDLRRTRAASQSIIPVDTKLARGIERLFPEFAGR 226 (325)
T ss_pred HHHHHHHhc-------------CeeEEEEEEEEhhcCCccccccchhhccccchHhhCeeeCCccHHHHHHHhCcccCCe
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCce
Q 014890 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDM 387 (416)
Q Consensus 308 l~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~~ 387 (416)
|+|+||||||++||++||++++++++++|||+++|+++++++|||||+|+++|+||+||+|++||+|||+.+|+++++++
T Consensus 227 l~~~avRVPv~~~s~~dl~v~~~~~~~~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~ 306 (325)
T TIGR01532 227 FEAIAVRVPTVNVTALDLSVTTKRDVKANEVNRVLREAAQGPLRGIVDYTELPLVSCDFNHDPHSAIVDGTQTRVSGPRL 306 (325)
T ss_pred EEEEEEEecccCcEEEEEEEEECCCCCHHHHHHHHHHhhccccccccccccCCccccccCCCCcceEEEcccCEEecCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCcchhhhHhH
Q 014890 388 VKVIAWYDNEWGYSQRVVD 406 (416)
Q Consensus 388 vK~~~WyDNE~gys~R~vd 406 (416)
+|+++||||||||||||+|
T Consensus 307 ~k~~~WyDNE~gys~r~~d 325 (325)
T TIGR01532 307 VKLLVWCDNEWGFANRMLD 325 (325)
T ss_pred EEEEEEeCCcceeeeEccC
Confidence 9999999999999999997
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-85 Score=630.02 Aligned_cols=283 Identities=48% Similarity=0.802 Sum_probs=269.8
Q ss_pred hHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCCCCCCCCCc
Q 014890 79 IGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDL 157 (416)
Q Consensus 79 IGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p~~i~W~~~ 157 (416)
|||.++ + +.+ ++||+||| ..++++++|+++|||+||+|+++++ .++..+.++|+.|.++++++|.+|+|.+.
T Consensus 1 ig~~~~---~-~~~--v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k-~~~~~~i~~G~~i~~~~~~~p~~i~w~~~ 73 (285)
T KOG0657|consen 1 IGRLVL---Q-RNS--VDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVK-AENFKLIINGNPITIFQFRDPAKIPWGAK 73 (285)
T ss_pred CCcccc---c-cCC--cccccccCcccccccccccccccccCCcccccee-ecCCceeecCceEEeecccCcccCccccc
Confidence 577777 2 433 99999999 6899999999999999999999999 88998999999999999999999999999
Q ss_pred cccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHHHHHHHHHHhh
Q 014890 158 GIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFV 237 (416)
Q Consensus 158 gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~ 237 (416)
++|+|+|+||.|.+.+.+..|+++|||||||++|++| .|+||+|||+++|+++..||||+|||||||+|+.|+||++|
T Consensus 74 g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~d-apmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~f- 151 (285)
T KOG0657|consen 74 GADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSAD-APMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNF- 151 (285)
T ss_pred cceeEeeccccccccccccccccccceEEEeccccCC-CCcccccccccccccccceeechhhhhccccchhheecccc-
Confidence 9999999999999999999999999999999999985 99999999999999887799999999999999999999999
Q ss_pred hhccccccccccceeEEEEEeecccccchhhhcc-chhHHHhhhccccccccCCCChHHHHHHHcccccCCeeeEEEeeC
Q 014890 238 TQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVP 316 (416)
Q Consensus 238 ~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~-~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gkl~g~avRVP 316 (416)
||.+++|||+|++|++|+.+|. +.++||++|.+.|||||.+||++|+++||||||+||++|||+|||
T Consensus 152 ------------gI~EgLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vp 219 (285)
T KOG0657|consen 152 ------------GIMEGLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 219 (285)
T ss_pred ------------ccccccccceeeeccccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCC
Confidence 9999999999999999999995 568999999999999999999999999999999999999999999
Q ss_pred cccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCceEEEEEEecC
Q 014890 317 TPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDN 396 (416)
Q Consensus 317 t~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~~vK~~~WyDN 396 (416)
|+ +|++||+++++++.++|+++++++++++++||||| ||+ +| ++||||
T Consensus 220 t~-vsVvdl~~~~~k~a~~ddikkvvk~~~~~~lkGIL--te~--------------------------~f---ISWYDN 267 (285)
T KOG0657|consen 220 TP-VSVVDLTCHLEKPAKYDDIKKVVKLASEIPLKGIL--TEH--------------------------HF---ISWYDN 267 (285)
T ss_pred cc-eEeeeeecccccccchHHHHHHHHHhhcccccccc--ccc--------------------------ce---eeeecc
Confidence 99 99999999999999999999999999999999999 777 23 899999
Q ss_pred CcchhhhHhHHHHHHhhc
Q 014890 397 EWGYSQRVVDLADIVANN 414 (416)
Q Consensus 397 E~gys~R~vdl~~~~~~~ 414 (416)
|||||+||+||+.||+++
T Consensus 268 E~GYS~rVvDl~~h~ask 285 (285)
T KOG0657|consen 268 EFGYSNRVVDLMEHMASK 285 (285)
T ss_pred ccccchHHHHHHHHHhcC
Confidence 999999999999999875
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=461.14 Aligned_cols=235 Identities=19% Similarity=0.265 Sum_probs=211.3
Q ss_pred EEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChh---HHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVK---QASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 71 VaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~---~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
|||||||||||+++|++.+++ +++|||||| .+++ +++|+++|||.|+.+...++ .+++.+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~~--d~elVaVnD-~~~~~~a~lA~~lgyds~~~~~~~~~~-~~~~~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQD--DMKLVGVTK-TSPDFEAYRAKELGIPVYAASEEFIPR-FEEAGIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCC--CcEEEEEec-CChHHHHHHHHHhCCCEEeecCCcceE-eccCceEecCC--------
Confidence 699999999999999998764 599999999 5777 78888899999954444666 67777887775
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCC-CCeEEeecCccCCCCCCCeEecCCcchhhhH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~-~ptvV~gVN~~~y~~~~~IISnaSCTTn~La 226 (416)
++++. .++|+|+||||.|...+.++.|+++|+|+|++++|+++. +++||+|+|++.|.+.+ ||||+|||||||+
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~-~vs~aSCtTn~La 143 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKD-YVRVVSCNTTGLV 143 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc-eEEecCchHhhHH
Confidence 44443 379999999999999999999999999999999998863 68999999999998655 9999999999999
Q ss_pred HHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccC-CC---ChHHHHHHHcc
Q 014890 227 PFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPT-ST---GAAKAVALVLP 302 (416)
Q Consensus 227 p~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt-~t---Gaakav~kVlP 302 (416)
|++|+||++| ||+++.|||+|+ |+||+ |+|||| ++||||+ +| ++++++.+|||
T Consensus 144 p~~~~L~~~f-------------GI~~~~~Ttvh~-t~dq~-------d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP 200 (333)
T TIGR01546 144 RTLNAINDYS-------------KVDKVRAVMVRR-AADPN-------DVKKGP--INAIVPDPVTVPSHHGPDVQTVIP 200 (333)
T ss_pred HHHHHHHHhc-------------CeEEEEEEEEee-cCChh-------hhccCc--hhceEeCCCCCCCchHHHHHHcCC
Confidence 9999999999 999999999996 99994 899999 6999999 45 77999999999
Q ss_pred cccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhccc
Q 014890 303 ALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 347 (416)
Q Consensus 303 eL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~ 347 (416)
+|+ |+|+|+||||+++|++||++++++++++||||++|+++++
T Consensus 201 ~L~--i~g~AvrVPt~~vs~~dl~v~l~~~~t~eeV~~~l~~~~r 243 (333)
T TIGR01546 201 NLN--IETMAFVVPTTLMHVHSIMVELKKPVTKDDIIDILENTPR 243 (333)
T ss_pred CCC--ccEEEEEeCCCCcEEEEEEEEECCCCCHHHHHHHHHhCCc
Confidence 997 9999999999999999999999999999999999999875
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-52 Score=375.30 Aligned_cols=157 Identities=56% Similarity=0.868 Sum_probs=153.1
Q ss_pred hHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccc
Q 014890 225 LAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPAL 304 (416)
Q Consensus 225 Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL 304 (416)
|+|++|+||++| ||+++.|||+|+||++|+++|.+|+||||+|++++||||++||++|++++|||+|
T Consensus 1 Lap~~k~l~~~f-------------gI~~~~~Ttih~~t~~Q~~~D~~~~d~rrgr~a~~niip~~t~aa~av~~VlP~L 67 (157)
T PF02800_consen 1 LAPVLKVLDDNF-------------GIEKGRMTTIHAYTDPQKLVDGPHKDWRRGRAAAQNIIPTSTGAAKAVGKVLPEL 67 (157)
T ss_dssp HHHHHHHHHHHH-------------EEEEEEEEEEEESSTTSBSSSS--SSTGTTSBTTTSSEEEEESHHHHHHHHSGGG
T ss_pred Ccchhhhhhhhc-------------CEEEEEEEEEeccCCccceeeeccccccccccccccccccccccchhhhhhhhhc
Confidence 799999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccC
Q 014890 305 KGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMG 384 (416)
Q Consensus 305 ~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~ 384 (416)
+|||+|+|+||||+++|++||+++++|++++||||++|+++++++++||++|+++|+||+||+|+++|+|||..+|++++
T Consensus 68 ~gki~g~a~rVPt~~~s~~dl~~~l~k~~t~eeV~~~~~~aa~~~~~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~v~~ 147 (157)
T PF02800_consen 68 NGKITGMAVRVPTPNVSLHDLTVELEKPVTKEEVNEALKQAARGPLKGILGYTEDPLVSSDFNGDRHSSIFDAEATIVVN 147 (157)
T ss_dssp TTTEEEEEEEESSSSEEEEEEEEEESSSS-HHHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGEEEEE
T ss_pred cCcceeeEEeeeecccCceEEEEecccchhhhhhhhhhhhhhHhhhhhhheecccceEEeccCCCceEEEEEhHHCeEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEe
Q 014890 385 DDMVKVIAWY 394 (416)
Q Consensus 385 ~~~vK~~~Wy 394 (416)
++++|+++||
T Consensus 148 ~~~vkl~~WY 157 (157)
T PF02800_consen 148 GNLVKLFAWY 157 (157)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEC
Confidence 9999999999
|
The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D .... |
| >PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=365.76 Aligned_cols=149 Identities=55% Similarity=0.907 Sum_probs=140.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCC-ChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~-~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
|||||||||||||+++|+++.++ +|+||||||+. ++++++|||||||+||+|+++++ .+++.|.++|++|++++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~--~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~-~~~~~l~v~G~~I~~~~~~ 77 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQP--DIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVE-VDDDGLIVNGKKIKVTEER 77 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTST--TEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEE-EETTEEEETTEEEEEEHTS
T ss_pred CEEEEECCCcccHHHHHhhcccc--eEEEEEEecccccchhhhhhhhccccccceecccc-cccceeEeecccccchhhh
Confidence 69999999999999999999765 59999999987 99999999999999999999999 8999999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCC-CCeEEeecCccCCCCCCCeEecCCc
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDEPIISNASC 220 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~-~ptvV~gVN~~~y~~~~~IISnaSC 220 (416)
+|+++||+++|||||+||||.|.+++.++.|+++||||||+|+|++++ +||||+|||++.|+++++|||++||
T Consensus 78 dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 78 DPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp SGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred hhcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 999999999999999999999999999999999999999999999986 9999999999999998899999999
|
The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O .... |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-49 Score=394.03 Aligned_cols=237 Identities=23% Similarity=0.321 Sum_probs=199.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc---cccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK---YDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk---yDS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
++||||||||||||.++|++.+++ +++||+|+|. ++++.+||++ || .||+++..++..++..+.+.+.
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~--d~eLvav~d~-~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~~----- 71 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQP--DMELVGVAKT-KPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAGT----- 71 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCC--CcEEEEEECC-ChHHHHHHHHhcCCC-ccccCccccccccCCceEEcCC-----
Confidence 479999999999999999998764 5999999996 6899999988 44 5666665443223334444432
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCC--CeEEeecCccCCCCCCCeEecCCcch
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI--PTYVVGVNADAYKPDEPIISNASCTT 222 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~--ptvV~gVN~~~y~~~~~IISnaSCTT 222 (416)
+.++. .++|+||||||.+.+.+.++.|+++| ++||+++|+++++ .+||+|||++.|.+. +||+|+||||
T Consensus 72 ----~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~~-~~v~~~sCtT 142 (341)
T PRK04207 72 ----IEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALGK-DYVRVVSCNT 142 (341)
T ss_pred ----hhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCCC-CcEEccChHH
Confidence 33331 37999999999999999999999999 7899999986554 358999999998753 4999999999
Q ss_pred hhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCC----CChHHHHH
Q 014890 223 NCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTS----TGAAKAVA 298 (416)
Q Consensus 223 n~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~----tGaakav~ 298 (416)
|||+|+||+||++| ||+++.|||||++|+ + +|+| |++++||+|.+ ++.++++.
T Consensus 143 ~~l~~~l~~L~~~f-------------gI~~~~vTtv~a~td------~--~~~~--r~~~~niip~p~~~~~~~g~~v~ 199 (341)
T PRK04207 143 TGLCRTLCALDRAF-------------GVKKVRATLVRRAAD------P--KEVK--RGPINAIVPDPVTVPSHHGPDVK 199 (341)
T ss_pred HHHHHHHHHHHHhc-------------CceEEEEEEEEcCCC------c--chhh--HHHhcCcCCCCCCCCCCchhHHH
Confidence 99999999999999 999999999999884 2 3554 78999999862 45578999
Q ss_pred HHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhccc
Q 014890 299 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 347 (416)
Q Consensus 299 kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~ 347 (416)
+|+|+|+ |+++|+||||+++|+++++++|++++++|||+++|++++.
T Consensus 200 ~vlp~l~--i~~~avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~~~ 246 (341)
T PRK04207 200 TVLPDLD--ITTMAVKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPR 246 (341)
T ss_pred hhCCCCc--eEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHhCCC
Confidence 9999996 9999999999999999999999999999999999999874
|
|
| >smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=331.67 Aligned_cols=149 Identities=54% Similarity=0.905 Sum_probs=142.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
+||||||||||||.++|++.+++ ++++|+|||+.++++++|||+|||+||+|+.+++ .+++.|.++|+.|+++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~--~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~-~~~~~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERP--DIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVE-VDEDGLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--CCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEE-EeCCEEEECCEEEEEEecCC
Confidence 58999999999999999988754 5999999998899999999999999999999998 88999999999999999999
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCc
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASC 220 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSC 220 (416)
|.++||+++|+||||||||.|.+++.++.|+++||||||||+|++++++|||+|||++.|+++++||||+||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 999999999999999999999999999999999999999999998766799999999999988789999999
|
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. |
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=316.50 Aligned_cols=233 Identities=16% Similarity=0.218 Sum_probs=199.0
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+++||| | +|.+||.++++|.+|+ |+ +.++ +|| +|. .+ +.++.+.|+|+++.|..
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~---fp---v~~l-------~l~--~s~-------~~-s~gk~i~f~g~~~~V~~- 57 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSD---LE---IEQI-------SIV--EIE-------PF-GEEQGIRFNNKAVEQIA- 57 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcC---Cc---hhhe-------eec--ccc-------cc-cCCCEEEECCEEEEEEE-
Confidence 579999 9 8999999999999986 77 3544 565 442 12 57899999999999964
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC---C-CCCCeEEeecCccCCCC--CCCeEecCCc
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG---K-GDIPTYVVGVNADAYKP--DEPIISNASC 220 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps---k-d~~ptvV~gVN~~~y~~--~~~IISnaSC 220 (416)
.++..|+ ++|+||+ +|...++++++...++|+ ++||+++ + +|+|++||+||++.+.. .++||+||+|
T Consensus 58 --l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNC 130 (322)
T PRK06901 58 --PEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDP 130 (322)
T ss_pred --CCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcH
Confidence 3444563 8999999 999999999999999999 9999987 3 48999999999998765 3589999999
Q ss_pred chhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHHH----------hhhccccccccC
Q 014890 221 TTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDLR----------RARAAALNIVPT 289 (416)
Q Consensus 221 TTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~r----------r~Raaa~NIIPt 289 (416)
||.+|++.|++||+.| ||++..+|||||+||. ++.+|..+...+ ..+.+|+|+||+
T Consensus 131 sTi~l~~aL~pL~~~~-------------~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~~~~~~~iAFNviP~ 197 (322)
T PRK06901 131 QVSQLALALAPFLQEQ-------------PLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPLDEEEQRLAFDVFPA 197 (322)
T ss_pred HHHHHHHHHHHHHHhc-------------CCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCCCCCceeeecccccc
Confidence 9999999999999999 9999999999999999 777775432111 236799999999
Q ss_pred C-CChHHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcc
Q 014890 290 S-TGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 290 ~-tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa 346 (416)
. .|-..+.+|+||+| .+++++|+||||.++|.+.++++++++++.||++++|++++
T Consensus 198 ig~~m~~EtrKIl~~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~~ 254 (322)
T PRK06901 198 NAQNLELQLQKIFPQL-ENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQQNN 254 (322)
T ss_pred CCccHHHHHHHHhCCc-ccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhCC
Confidence 8 46778889999988 25999999999999999999999999999999999999876
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=311.59 Aligned_cols=231 Identities=25% Similarity=0.380 Sum_probs=194.5
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||+|.| .|.+|+.++|.|.+++.+.++++++... + ..+..+.++|..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~-----------------------~-~~g~~l~~~g~~i~v~--- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA-----------------------R-SAGKELSFKGKELKVE--- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc-----------------------c-cCCCeeeeCCceeEEe---
Confidence 6999999 9999999999998865455777776421 0 2344455666666664
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC---C-CCCCeEEeecCccCCCCC--CCeEecCCcc
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG---K-GDIPTYVVGVNADAYKPD--EPIISNASCT 221 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps---k-d~~ptvV~gVN~~~y~~~--~~IISnaSCT 221 (416)
++...+|. ++|+||+|+|.+.+++++++|+++|+ +||+.++ . +++|++++|||++.++.. ++|||||+|+
T Consensus 55 d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C~ 130 (334)
T PRK14874 55 DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNCS 130 (334)
T ss_pred eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccHH
Confidence 34445674 89999999999999999999999999 8897665 2 358999999999998764 4799999999
Q ss_pred hhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeeccccc------------chhhhccc---hhHHHhhhcccccc
Q 014890 222 TNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTG------------DQRLLDAS---HRDLRRARAAALNI 286 (416)
Q Consensus 222 Tn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~------------~Q~~lD~~---~~d~rr~Raaa~NI 286 (416)
|+|++|.|++|+++| +|+++.|||+|++|| +|+.+|.+ ++++|++|++++|+
T Consensus 131 ~t~~~l~l~pL~~~~-------------~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~ni 197 (334)
T PRK14874 131 TIQMVVALKPLHDAA-------------GIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNV 197 (334)
T ss_pred HHHHHHHHHHHHHhc-------------CceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcc
Confidence 999999999999999 999999999999996 56777744 46888999999999
Q ss_pred ccCC-----CChHHH-------HHHHc--ccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhc
Q 014890 287 VPTS-----TGAAKA-------VALVL--PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES 345 (416)
Q Consensus 287 IPt~-----tGaaka-------v~kVl--PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~a 345 (416)
+|+. +|++++ +.+++ |++ +++++++|||+++||+.+++++++++++.+||+++|+++
T Consensus 198 ip~~~~~~~~gh~~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~~~ 268 (334)
T PRK14874 198 IPHIDVFMDDGYTKEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILAEA 268 (334)
T ss_pred cCcCCccccCCCcHHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHcC
Confidence 9997 788877 35666 888 599999999999999999999999999999999999984
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=307.07 Aligned_cols=233 Identities=23% Similarity=0.324 Sum_probs=191.3
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
||+|.| .|.+|+.++|.|.+++.+.++++.+. |. + ..+..+.+.|+.+.+... +
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~a---------------s~--------~-~~g~~~~~~~~~~~~~~~-~ 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLA---------------SD--------R-SAGRKVTFKGKELEVNEA-K 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEe---------------cc--------c-cCCCeeeeCCeeEEEEeC-C
Confidence 699999 99999999999987643334443321 10 1 345556666755555332 2
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC---C-CCCCeEEeecCccCCCCC--CCeEecCCcch
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG---K-GDIPTYVVGVNADAYKPD--EPIISNASCTT 222 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps---k-d~~ptvV~gVN~~~y~~~--~~IISnaSCTT 222 (416)
+. .| .++|+||+|+|.+.+++.+++|+++|+ +||+.++ . +++|++|||||++.+++. ++|||||+|+|
T Consensus 56 ~~--~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~~ 129 (339)
T TIGR01296 56 IE--SF--EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCST 129 (339)
T ss_pred hH--Hh--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcHH
Confidence 22 23 489999999999999999999999999 6897775 3 368999999999988763 56999999999
Q ss_pred hhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc------------hhhhccchhH--------HHhhhcc
Q 014890 223 NCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD------------QRLLDASHRD--------LRRARAA 282 (416)
Q Consensus 223 n~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~------------Q~~lD~~~~d--------~rr~Raa 282 (416)
+|++|.|++|+++| +|+++.|||+|++||+ |++++..++| .+++|++
T Consensus 130 t~~~l~l~pL~~~~-------------~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~ 196 (339)
T TIGR01296 130 IQMVVVLKPLHDEA-------------KIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQI 196 (339)
T ss_pred HHHHHHHHHHHHhc-------------CccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcc
Confidence 99999999999999 9999999999999997 4445544444 7889999
Q ss_pred ccccccCC-----CChHHHHHHHccccc-------CCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcc
Q 014890 283 ALNIVPTS-----TGAAKAVALVLPALK-------GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 283 a~NIIPt~-----tGaakav~kVlPeL~-------gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa 346 (416)
++||||+. +|+++++.|+.|||+ .+++++++|||+++||+.+++++++++++.||++++|++++
T Consensus 197 ~~NiIp~~~~~~~~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~~~~ 272 (339)
T TIGR01296 197 AFNAIPHIDDFNDDGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELLKNAP 272 (339)
T ss_pred cccccCcCCCcccCCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence 99999995 799999999999986 36999999999999999999999999999999999999653
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=295.94 Aligned_cols=235 Identities=16% Similarity=0.194 Sum_probs=190.0
Q ss_pred eeEEEEc-cChhHHHHHHHHH-hCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWH-GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~-~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+||||+| +|.+||.++++|. +++ |++ ..+ ++| .|. + +++..+.++|+.+.|...
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~---fp~---~~~-------~~~--ss~--------~-s~g~~~~f~~~~~~v~~~ 56 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERD---FDA---IRP-------VFF--STS--------Q-LGQAAPSFGGTTGTLQDA 56 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCC---Ccc---ccE-------EEE--Ech--------h-hCCCcCCCCCCcceEEcC
Confidence 4899999 9999999999998 553 763 211 333 331 2 577888899988766542
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCCC--CCe--EecC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKPD--EPI--ISNA 218 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~~--~~I--ISna 218 (416)
.+.+ .| .++|+||+|.|...+++++++..++|...++||+++ ++|+|++||+||++.+... ++| |+||
T Consensus 57 ~~~~--~~--~~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ianP 132 (366)
T TIGR01745 57 FDID--AL--KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVGG 132 (366)
T ss_pred cccc--cc--cCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEECc
Confidence 2211 34 489999999999999999999999995448999987 3489999999999977653 567 8999
Q ss_pred CcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHHH--------------------
Q 014890 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDLR-------------------- 277 (416)
Q Consensus 219 SCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~r-------------------- 277 (416)
+|||++|++.|++||+.| ||+++.+|||||+||. ++.+|+.....+
T Consensus 133 NCst~~l~~aL~pL~~~~-------------~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~ 199 (366)
T TIGR01745 133 NCTVSLMLMSLGGLFAND-------------LVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDI 199 (366)
T ss_pred CHHHHHHHHHHHHHHhcc-------------CccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhh
Confidence 999999999999999999 9999999999999999 667764332211
Q ss_pred -----------------hhhccccccccCC-----CChHHHHH-------HHc---ccccCCeeeEEEeeCcccceEEEE
Q 014890 278 -----------------RARAAALNIVPTS-----TGAAKAVA-------LVL---PALKGKLNGIALRVPTPNVSVVDL 325 (416)
Q Consensus 278 -----------------r~Raaa~NIIPt~-----tGaakav~-------kVl---PeL~gkl~g~avRVPt~~vs~vdl 325 (416)
..+.+|+|+||+. +|+++++. |+| |+| +++++|+||||.++|...+
T Consensus 200 ~~~~~~~~~~~~~~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l--~VsaTcVRVPV~~gHs~sv 277 (366)
T TIGR01745 200 ERKVTKLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTI--PVDGLCVRIGALRCHSQAF 277 (366)
T ss_pred ccccccccccCCCCcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCC--cEEEEEEecceeccEEEEE
Confidence 1356789999997 48877775 455 566 5999999999999999999
Q ss_pred EEEEccCCCHHHHHHHHHhcc
Q 014890 326 VVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 326 ~v~l~k~vs~eeV~~a~~~aa 346 (416)
+++++++++.||++++|+++.
T Consensus 278 ~ve~~~~vs~e~i~~~L~~~~ 298 (366)
T TIGR01745 278 TIKLKKDVSLETIEEIIRAHN 298 (366)
T ss_pred EEEECCCCCHHHHHHHHHhCC
Confidence 999999999999999999854
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=280.69 Aligned_cols=296 Identities=25% Similarity=0.295 Sum_probs=214.1
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCe-EEECCEEEEEEe
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGKVIQVVS 145 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~-i~v~G~~I~v~~ 145 (416)
++||||.| +|.+|+.+++.|.+++ .+++.+ ++| .|. + +.|.. +.+.|+.+.+..
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~-f~~~~~------------~~~--AS~--------r-SaG~~~~~f~~~~~~v~~ 56 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH-FPFEEL------------VLL--ASA--------R-SAGKKYIEFGGKSIGVPE 56 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC-CCcceE------------EEE--ecc--------c-ccCCccccccCccccCcc
Confidence 37999999 9999999999999974 233321 333 332 2 45555 889888766643
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCCC--CC-eEecC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKPD--EP-IISNA 218 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~~--~~-IISna 218 (416)
. -.+...|. ++||||.|.|...+++++++..++|+ ++||+.| .+|+|++|++||++.+... .+ ||+||
T Consensus 57 ~-~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iianp 131 (334)
T COG0136 57 D-AADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANP 131 (334)
T ss_pred c-cccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECC
Confidence 1 14445565 89999999999999999999999998 9999987 3489999999999976543 35 99999
Q ss_pred CcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHHH----------hhhccccccc
Q 014890 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDLR----------RARAAALNIV 287 (416)
Q Consensus 219 SCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~r----------r~Raaa~NII 287 (416)
+|||.+|++.||+|+++| ||++..+|||||+||. .+.+++.....+ .++.+|+|+|
T Consensus 132 NCst~~l~~aL~PL~~~~-------------~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~~~iAfNvi 198 (334)
T COG0136 132 NCSTIQLVLALKPLHDAF-------------GIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVI 198 (334)
T ss_pred ChHHHHHHHHHHHHHhhc-------------CceEEEEEEeehhhhcCccchhhHHHHHhhhccCccccccccccccccc
Confidence 999999999999999999 9999999999999998 435554322111 1578999999
Q ss_pred cCCC-----ChHHHHHH-------HcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCccc
Q 014890 288 PTST-----GAAKAVAL-------VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILS 355 (416)
Q Consensus 288 Pt~t-----Gaakav~k-------VlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~ 355 (416)
|+.. |++|+++| ||.+-.-+++++|+||||..||+..++++++++++.+|+.+.+-..+.+ .-+..
T Consensus 199 P~I~~~~~ng~t~EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~l~~ap~--v~v~~ 276 (334)
T COG0136 199 PHIDGFLDNGYTKEEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPSAPG--VVVVD 276 (334)
T ss_pred ccCCccccCCccHHHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHHhccCCC--cEEEe
Confidence 9984 58877765 5554455799999999999999999999999999999999665333322 22222
Q ss_pred cc-CCCeeeeccCCCCcceeeeCCCCc-ccCCceEEEEEEecC-CcchhhhHhHHHH
Q 014890 356 VC-DEPLVSVDFRCSDVSSTVDSSLTL-VMGDDMVKVIAWYDN-EWGYSQRVVDLAD 409 (416)
Q Consensus 356 ~~-~~p~VS~Df~g~~~S~i~D~~~t~-v~~~~~vK~~~WyDN-E~gys~R~vdl~~ 409 (416)
-. +.|+.-.|-.|... ++=+..-. .+.++.+++..==|| -||=|--.+-+++
T Consensus 277 ~~~~~P~~~~d~~g~~~--v~VGRiR~d~~~~~~l~~~~v~dNl~~GAA~~av~iaE 331 (334)
T COG0136 277 NPEDRPQTPLDATGGDE--VSVGRIRKDLSGPEGLKLWVVGDNLRKGAALNAVLIAE 331 (334)
T ss_pred CCccCccChhhhcCCCc--eEEeEeeecCCCCCcEEEEEEechhhhhhHHHHHHHHH
Confidence 22 35666667677652 22222211 123344665555677 3564444444443
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=275.52 Aligned_cols=294 Identities=18% Similarity=0.299 Sum_probs=216.1
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
.+||||.| +|-+|+.++|+|.+.+ +|++ .++ +++ .|. + +.|+.+.+.|+.+.+...
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~--~f~v---~~l-------~~~--aS~--------~-saGk~~~~~~~~l~v~~~ 61 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKET--KFNI---AEV-------TLL--SSK--------R-SAGKTVQFKGREIIIQEA 61 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCC--CCCc---ccE-------EEE--ECc--------c-cCCCCeeeCCcceEEEeC
Confidence 47999999 8999999999998543 3774 111 222 331 2 567888888887777543
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCCCCCeEecCCcch
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKPDEPIISNASCTT 222 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~~~~IISnaSCTT 222 (416)
++.. | .++|+||.|+|...+++++++..++|+ +||+.++ ++++|+++|+||.+.++...+||+||+|+|
T Consensus 62 -~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~t 134 (347)
T PRK06728 62 -KINS--F--EGVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSA 134 (347)
T ss_pred -CHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCHH
Confidence 4543 4 379999999999999999999999998 8999886 347999999999998876457999999999
Q ss_pred hhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHHH------------hh-------hcc
Q 014890 223 NCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDLR------------RA-------RAA 282 (416)
Q Consensus 223 n~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~r------------r~-------Raa 282 (416)
++++..|++|+++| +|+++.++|+|++||. ...++..++..+ .. +.+
T Consensus 135 t~~~laL~PL~~~~-------------~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~i 201 (347)
T PRK06728 135 LQMVTALQPIRKVF-------------GLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPI 201 (347)
T ss_pred HHHHHHHHHHHHcC-------------CccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCce
Confidence 99999999999999 9999999999999999 677775332222 12 778
Q ss_pred ccccccCC-----CChHHHHH-------HHc--ccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccc
Q 014890 283 ALNIVPTS-----TGAAKAVA-------LVL--PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN 348 (416)
Q Consensus 283 a~NIIPt~-----tGaakav~-------kVl--PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~ 348 (416)
++|+||+. .|+++++. ||| |+| +++++|+||||+++|...++++|+++++.|+++++|++++
T Consensus 202 afNviP~i~~~~~~g~t~EE~K~~~E~~KIL~~~~l--~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~~-- 277 (347)
T PRK06728 202 AFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNL--KMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAP-- 277 (347)
T ss_pred eccccCcCCccccCCccHHHHHHHHHHHHHhCCCCC--cEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHcCC--
Confidence 99999997 57776665 556 666 5999999999999999999999999999999999998763
Q ss_pred cCCCcccccCCCe-----eeeccCCCCcceeeeCCCCccc-CCceEEEEEEecCC-cchhhhHhHHHHHHhhc
Q 014890 349 ELKGILSVCDEPL-----VSVDFRCSDVSSTVDSSLTLVM-GDDMVKVIAWYDNE-WGYSQRVVDLADIVANN 414 (416)
Q Consensus 349 ~lkgil~~~~~p~-----VS~Df~g~~~S~i~D~~~t~v~-~~~~vK~~~WyDNE-~gys~R~vdl~~~~~~~ 414 (416)
||.-+ ++|- --.|..|.. .+.=+..-.-. .++-+++..-=||= ||=+---|-+++++.++
T Consensus 278 ---gi~~~-d~p~~~~~ptP~~~~g~~--~v~VGRiR~d~~~~~~l~~w~~~DNlr~GAA~nav~iaE~l~~~ 344 (347)
T PRK06728 278 ---GVILQ-DNPSEQLYPMPLYAEGKI--DTFVGRIRKDPDTPNGFHLWIVSDNLLKGAAWNSVQIAETMVEE 344 (347)
T ss_pred ---CCEEe-CCCcccCCcCccccCCCC--eEEEeCccccCCCCCeEEEEEEechHHHHHHHHHHHHHHHHHHc
Confidence 33333 3320 011222322 12222222111 13346665556773 56555556666666543
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=275.97 Aligned_cols=235 Identities=17% Similarity=0.180 Sum_probs=185.9
Q ss_pred eeEEEEc-cChhHHHHHH-HHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 69 LKVAING-FGRIGRNFLR-CWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr-~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+||||+| +|.+|+.++| ++.+++ |++ .++ ++ +.|. + +++..+.++|+.+.++..
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~---f~~---~~l-------~~--~ss~--------~-sg~~~~~f~g~~~~v~~~ 57 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEEND---FDL---IEP-------VF--FSTS--------Q-AGGAAPSFGGKEGTLQDA 57 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCC---CCc---CcE-------EE--ecch--------h-hCCcccccCCCcceEEec
Confidence 7999999 8999999998 554443 762 111 11 1221 1 344455678877777654
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCCC--C--CeEecC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKPD--E--PIISNA 218 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~~--~--~IISna 218 (416)
.++.. | .++|+||.|+|...+++++++..++|++.+||+.++ ++++|++||+||++.+... . ++|+||
T Consensus 58 ~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIanP 133 (369)
T PRK06598 58 FDIDA--L--KKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFVGG 133 (369)
T ss_pred CChhH--h--cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEEcC
Confidence 44443 3 379999999999999999999999996658999987 3579999999999987642 2 489999
Q ss_pred CcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHHH--------------------
Q 014890 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDLR-------------------- 277 (416)
Q Consensus 219 SCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~r-------------------- 277 (416)
+|+|++++..|+||++.+ +|+++.++|||++||. .+.+|+.....+
T Consensus 134 nC~tt~~~laL~PL~~~~-------------~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~ 200 (369)
T PRK06598 134 NCTVSLMLMALGGLFKND-------------LVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDI 200 (369)
T ss_pred ChHHHHHHHHHHHHHhcC-------------CceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhh
Confidence 999999999999999999 9999999999999999 666664322211
Q ss_pred -----------------hhhccccccccCC-----CChHHHHHH-------Hc----ccccCCeeeEEEeeCcccceEEE
Q 014890 278 -----------------RARAAALNIVPTS-----TGAAKAVAL-------VL----PALKGKLNGIALRVPTPNVSVVD 324 (416)
Q Consensus 278 -----------------r~Raaa~NIIPt~-----tGaakav~k-------Vl----PeL~gkl~g~avRVPt~~vs~vd 324 (416)
..+.+++|+||+. +|+++++.| || |+| +++++|+||||.++|...
T Consensus 201 ~~~~~~~~~~~~~~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l--~vs~tcVRVPV~~gHs~s 278 (369)
T PRK06598 201 DRKVTELMRSGDLPTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPI--PVDGLCVRVGAMRCHSQA 278 (369)
T ss_pred hhhhhhhcccCCCCcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCC--eEEEEEEEcceeccEEEE
Confidence 1257899999997 588877764 55 555 599999999999999999
Q ss_pred EEEEEccCCCHHHHHHHHHhcc
Q 014890 325 LVVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 325 l~v~l~k~vs~eeV~~a~~~aa 346 (416)
++++|+++++.+|++++|++++
T Consensus 279 v~ve~~~~~~~~~i~~~L~~~~ 300 (369)
T PRK06598 279 LTIKLKKDVPLAEIEEILAAHN 300 (369)
T ss_pred EEEEECCCCCHHHHHHHHHhcC
Confidence 9999999999999999999854
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=243.23 Aligned_cols=235 Identities=23% Similarity=0.303 Sum_probs=175.6
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhcccccc-----ccCCCceeeecCCeEEECCEE
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTL-----GIFEADVKPVGTDGISVDGKV 140 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~-----G~f~~~v~~~~~~~i~v~G~~ 140 (416)
|++||+|+| +|.+|+.++|.|.+.+ .++|+++... ....-..+ ...| |.+.+. + +.
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p--~~el~~~~~s--~~~~G~~~--~~~~~~~~~~~~~~~----------~--~~ 63 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHP--WFEVTALAAS--ERSAGKTY--GEAVRWQLDGPIPEE----------V--AD 63 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCC--CceEEEEEcC--hhhcCCcc--ccccccccccccccc----------c--cc
Confidence 579999999 9999999999998764 4899988221 11111111 1111 001100 0 12
Q ss_pred EEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCC------
Q 014890 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP------ 210 (416)
Q Consensus 141 I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~------ 210 (416)
+.+.. .+|+.+ .++|+|++|++...+.+.++...++|++ +|+.++ .++.|.+++++|++.|..
T Consensus 64 ~~v~~-~~~~~~----~~~DvVf~a~p~~~s~~~~~~~~~~G~~--vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~ 136 (349)
T PRK08664 64 MEVVS-TDPEAV----DDVDIVFSALPSDVAGEVEEEFAKAGKP--VFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRK 136 (349)
T ss_pred eEEEe-CCHHHh----cCCCEEEEeCChhHHHHHHHHHHHCCCE--EEECCchhcCCCCCCcCChhhCHHHHcChHhhHh
Confidence 33322 244433 2789999999999999998888888984 454444 346789999999886531
Q ss_pred ----CCCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhcccccc
Q 014890 211 ----DEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNI 286 (416)
Q Consensus 211 ----~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NI 286 (416)
..+|||||||+|+|+++.|++|++ | ||+++.|||+|++|++++-.. ..+.+++|+
T Consensus 137 ~~~~~~~iVa~p~C~~t~~~l~l~pL~~-~-------------gl~~i~v~~~~g~SgaG~~~~-------~~~~~~~N~ 195 (349)
T PRK08664 137 RRGWDGFIVTNPNCSTIGLVLALKPLMD-F-------------GIERVHVTTMQAISGAGYPGV-------PSMDIVDNV 195 (349)
T ss_pred hccCCceEEEccCHHHHHHHHHHHHHHH-C-------------CCcEEEEEEEeccccCCcccc-------hhhhhhcCc
Confidence 135999999999999999999999 9 999999999999999975322 245689999
Q ss_pred ccCCCCh--------HHHHHHH----cccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhccc
Q 014890 287 VPTSTGA--------AKAVALV----LPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 347 (416)
Q Consensus 287 IPt~tGa--------akav~kV----lPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~ 347 (416)
+|...+. .+.+.++ +|.++.+|+++++|||+++||+.+++++++++++.+|++++|+++..
T Consensus 196 ~p~~~~~ehrh~~Ei~~~l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~~~~~ 268 (349)
T PRK08664 196 IPYIGGEEEKIEKETLKILGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKG 268 (349)
T ss_pred ccccCchhhhhhHHHHHHhhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHHhccC
Confidence 9998775 2444343 56668889999999999999999999999999999999999998765
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=237.60 Aligned_cols=235 Identities=20% Similarity=0.240 Sum_probs=185.1
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
+++||||.| +|-+|+.++|+|.+++.|.++|+.+.. + + +.|+.+.+.|+.+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS-------------~----------~-saG~~~~~~~~~~~v~- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALAS-------------E----------E-SAGETLRFGGKSVTVQ- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc-------------c----------C-cCCceEEECCcceEEE-
Confidence 468999999 999999999999987545567655531 1 1 4567777888766664
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCC--CCCeEecCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP--DEPIISNAS 219 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~--~~~IISnaS 219 (416)
+++++.|. ++|+||.|+|...+.++++...++|+ +||+.++ ++++|.++|+||.+.++. ..+||+||+
T Consensus 58 --~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAnPg 131 (336)
T PRK08040 58 --DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAVAD 131 (336)
T ss_pred --eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEECCC
Confidence 45667674 79999999999999999999999999 7898886 347899999999944432 367999999
Q ss_pred cchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhH------------HHhhhcccccc
Q 014890 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRD------------LRRARAAALNI 286 (416)
Q Consensus 220 CTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d------------~rr~Raaa~NI 286 (416)
|+|++++..|+||++++ +|+++.++|++++||. +...+..++. ....+..++|+
T Consensus 132 C~~t~~~laL~PL~~~~-------------~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~ 198 (336)
T PRK08040 132 SLTSQLLTAIKPLIDQA-------------GLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNM 198 (336)
T ss_pred HHHHHHHHHHHHHHHhC-------------CCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCce
Confidence 99999999999999999 9999999999999999 5555542211 11223479999
Q ss_pred ccCC---CChHHHHHHHcccc----c---CCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhc
Q 014890 287 VPTS---TGAAKAVALVLPAL----K---GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES 345 (416)
Q Consensus 287 IPt~---tGaakav~kVlPeL----~---gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~a 345 (416)
+|.. .|......++.||+ + -+++.+++|||+++||+..++++++++++.+|+.++|+++
T Consensus 199 ~pyi~~~~g~~~~erh~~~Ei~kiL~~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~~~ 267 (336)
T PRK08040 199 LPLLPDSEGSVREERRLVDQVRKILQDEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALEQG 267 (336)
T ss_pred eeccCCcCCcchHhhhhHHHHHHHhCCCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHhcC
Confidence 9993 23333334433332 1 1388999999999999999999999999999999999984
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=240.07 Aligned_cols=254 Identities=24% Similarity=0.287 Sum_probs=187.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCC-h-hHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGG-V-KQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~-~-~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
+||||+| +|.+|+.++|.+.+++ .++|+++-+... . +.+..++.+. .|+.+.+. + ..+.+..
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~--~~~l~~v~~~~~~~g~~~~~~~~~~-~~~~~~~~----------~--~~~~~~~ 65 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHP--YFELAKVVASPRSAGKRYGEAVKWI-EPGDMPEY----------V--RDLPIVE 65 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--CceEEEEEEChhhcCCcchhhcccc-ccCCCccc----------c--ceeEEEe
Confidence 5899999 8999999999888764 489988854310 0 0111111000 00000000 0 1122221
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCC---------CC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP---------DE 212 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~---------~~ 212 (416)
-+++ .| .++|+|+.|++...+.+.++...++|++ +|+.++ ++++|.+++++|++.|.. ..
T Consensus 66 -~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~--VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~ 138 (341)
T TIGR00978 66 -PEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKP--VFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKG 138 (341)
T ss_pred -CCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCE--EEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCc
Confidence 2232 23 4799999999999999999988899994 454443 456899999999886652 12
Q ss_pred CeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCC
Q 014890 213 PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTG 292 (416)
Q Consensus 213 ~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tG 292 (416)
.||+||+|+|+|+++.|++|+++| +|+++.|||+|++||.++.... .+.+++|++|...+
T Consensus 139 ~iVanPgC~~t~~~lal~pL~~~~-------------~i~~v~v~t~~gvSgaG~~~~~-------~~~~~~Ni~py~~~ 198 (341)
T TIGR00978 139 FIVTNPNCTTAGLTLALKPLIDAF-------------GIKKVHVTTMQAVSGAGYPGVP-------SMDILDNIIPHIGG 198 (341)
T ss_pred cEEeCCCcHHHHHHHHHHHHHHhC-------------CCcEEEEEEEEccCCCCCCCCc-------cchhhCCeEecCcH
Confidence 599999999999999999999999 9999999999999999764322 14479999999876
Q ss_pred h----HHHHHHHcccccC--------CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCC
Q 014890 293 A----AKAVALVLPALKG--------KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEP 360 (416)
Q Consensus 293 a----akav~kVlPeL~g--------kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p 360 (416)
. ..++.++|+.+.| +++.+++|||+.+||+.+++++++++++.+|++++|+++.+.++...|.-+.+|
T Consensus 199 ~ehrh~~Ei~~il~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 278 (341)
T TIGR00978 199 EEEKIERETRKILGKLENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEK 278 (341)
T ss_pred HHHHHHHHHHHHhCccccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCccccccCCCCCCC
Confidence 4 2456788887744 499999999999999999999999999999999999998877666666666677
Q ss_pred eeee
Q 014890 361 LVSV 364 (416)
Q Consensus 361 ~VS~ 364 (416)
+|-.
T Consensus 279 fv~~ 282 (341)
T TIGR00978 279 PIIV 282 (341)
T ss_pred cEEE
Confidence 6644
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=234.52 Aligned_cols=235 Identities=17% Similarity=0.256 Sum_probs=185.2
Q ss_pred cccceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 65 AQAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 65 ~~m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
+.+++||+|.| .|.+|+.++|.|.+++.+.++++.+- |. + ..|+.+.++|+.+.+
T Consensus 4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~la---------------s~--------r-saGk~~~~~~~~~~v 59 (344)
T PLN02383 4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLA---------------SA--------R-SAGKKVTFEGRDYTV 59 (344)
T ss_pred cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEE---------------cc--------C-CCCCeeeecCceeEE
Confidence 44568999999 99999999999998754456654442 11 1 345555566655554
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCCC------CC
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKPD------EP 213 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~~------~~ 213 (416)
.. -++.. | .++|+||.|+|...+++++++..++|+ +||+.++ +++.|.++|++|.+.++.. .+
T Consensus 60 ~~-~~~~~--~--~~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~ 132 (344)
T PLN02383 60 EE-LTEDS--F--DGVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGA 132 (344)
T ss_pred Ee-CCHHH--H--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCc
Confidence 32 23332 3 379999999999999999999989998 7898886 4578999999999877642 24
Q ss_pred eEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhH------------HHhhh
Q 014890 214 IISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRD------------LRRAR 280 (416)
Q Consensus 214 IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d------------~rr~R 280 (416)
||+||+|+|++++..|+||++++ +|+++.++|++++||. ...++..+.. -+...
T Consensus 133 iIanPgC~~t~~~laL~PL~~~~-------------~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~ 199 (344)
T PLN02383 133 LIANPNCSTIICLMAVTPLHRHA-------------KVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQ 199 (344)
T ss_pred EEECCCcHHHHHHHHHHHHHHcC-------------CeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCC
Confidence 99999999999999999999999 9999999999999999 6666655421 12346
Q ss_pred ccccccccCC-----CChHHHHHH-------Hc--ccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhc
Q 014890 281 AAALNIVPTS-----TGAAKAVAL-------VL--PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES 345 (416)
Q Consensus 281 aaa~NIIPt~-----tGaakav~k-------Vl--PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~a 345 (416)
..++|++|+. +|+++++.+ ++ |++ +++.+++|||+.+||+..++++++++++.||+.++|+++
T Consensus 200 ~~ayn~~ph~~~~~~~g~~~~E~~~~~e~~kil~~~~~--~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~~~ 276 (344)
T PLN02383 200 QYAFNLFSHNAPMQENGYNEEEMKLVKETRKIWNDDDV--KVTATCIRVPVMRAHAESINLQFEKPLDEATAREILASA 276 (344)
T ss_pred ccccccccccCccccCCCChHHHHHHHHHHHHhCCCCC--eEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHhcC
Confidence 6899999986 366655554 33 344 499999999999999999999999999999999999984
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=231.05 Aligned_cols=235 Identities=20% Similarity=0.239 Sum_probs=183.9
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||+|.| +|-+|+.++|+|.++..+.++++.+-.. + ..|+.|.+.|+...+..
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-----------------------~-~aG~~l~~~~~~l~~~~- 58 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-----------------------E-SAGHSVPFAGKNLRVRE- 58 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-----------------------c-cCCCeeccCCcceEEee-
Confidence 37999999 8999999999999765445666555321 1 23555556665555532
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC---CCCCCeEEeecCccCCCC-C-CCeEecCCcc
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG---KGDIPTYVVGVNADAYKP-D-EPIISNASCT 221 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps---kd~~ptvV~gVN~~~y~~-~-~~IISnaSCT 221 (416)
++...| .++|+||.|+|...+.++++..+++|+ ++|+.++ .+++|+++|+||.+.++. . .+||+||+|+
T Consensus 59 --~~~~~~--~~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPgC~ 132 (336)
T PRK05671 59 --VDSFDF--SQVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPSAS 132 (336)
T ss_pred --CChHHh--cCCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCCcH
Confidence 222235 389999999999999999999999998 6888876 347999999999998764 2 5799999999
Q ss_pred hhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchh---HH---------Hhhhcccccccc
Q 014890 222 TNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHR---DL---------RRARAAALNIVP 288 (416)
Q Consensus 222 Tn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~---d~---------rr~Raaa~NIIP 288 (416)
|++++..|+||++.| +++++.++|++++||. ....+.... .+ ...+..++|++|
T Consensus 133 ~t~~~laL~PL~~~~-------------~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P 199 (336)
T PRK05671 133 AVALAVALAPLKGLL-------------DIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLA 199 (336)
T ss_pred HHHHHHHHHHHHHhc-------------CCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCcccccccccccccccc
Confidence 999999999999999 9999999999999998 455554211 11 123567889999
Q ss_pred CCC-----ChHHHHHHHccccc-------CCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcc
Q 014890 289 TST-----GAAKAVALVLPALK-------GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 289 t~t-----Gaakav~kVlPeL~-------gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa 346 (416)
+.. |+++++.+..||+. -+++.+++|||+++||+..++++++++++.+|+++++++++
T Consensus 200 ~ig~~~~~gh~~eE~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~~~~ 269 (336)
T PRK05671 200 QVGAPDAQGHTALERRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALEAAP 269 (336)
T ss_pred ccCccccCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHhCCC
Confidence 863 77777776666532 23889999999999999999999999999999999999553
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=204.10 Aligned_cols=237 Identities=18% Similarity=0.157 Sum_probs=173.8
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
|++||||.| .|.+|+.++|.|.+.+ +++++++-+-... ...+ ...|+.+... . ...+ .
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p--~~elv~v~~~~~~---g~~l--~~~~~~~~~~----------~---~~~~-~ 59 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHP--EVEIVAVTSRSSA---GKPL--SDVHPHLRGL----------V---DLVL-E 59 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCC--CceEEEEECcccc---Ccch--HHhCcccccc----------c---Ccee-e
Confidence 458999999 6999999999998764 4899888752111 0001 0111111100 0 0111 1
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CC-C------------------CCeEEee
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KG-D------------------IPTYVVG 202 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd-~------------------~ptvV~g 202 (416)
. .++..| .++|+|+.|++.....+.+...+++|+ +||+.++ ++ + .|..+++
T Consensus 60 ~--~~~~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe 133 (343)
T PRK00436 60 P--LDPEIL--AGADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPE 133 (343)
T ss_pred c--CCHHHh--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCc
Confidence 1 111123 369999999999999999999999887 8898876 22 3 6899999
Q ss_pred cCccCCCCCCCeEecCCcchhhhHHHHHHHHHHhhhhcccccccccccee--EEEEEeecccccc-hhhhccchhHHHhh
Q 014890 203 VNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGII--KGTMTTTHSYTGD-QRLLDASHRDLRRA 279 (416)
Q Consensus 203 VN~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~--~~~mTTiHa~T~~-Q~~lD~~~~d~rr~ 279 (416)
+|.+.++. .+||+||+|+|++++..|+||++.+ +|+ +..++|++++||. ....+..+...+..
T Consensus 134 ~~~~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~-------------~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~~~ 199 (343)
T PRK00436 134 LNREEIKG-ARLIANPGCYPTASLLALAPLLKAG-------------LIDPDSIIIDAKSGVSGAGRKASEGTLFSEVNE 199 (343)
T ss_pred cCHHHhcC-CCEEECCCCHHHHHHHHHHHHHHcC-------------CCCCCCEEEEEEEecccCCCCccccccchhhcC
Confidence 99998875 5899999999999999999999998 888 8999999999999 56666554222222
Q ss_pred hccccccccCCCChHHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcc
Q 014890 280 RAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 280 Raaa~NIIPt~tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa 346 (416)
.-.++|++|+. ...++.+.+-.+.++++.+++|||++.||+..++++++++++.+|++++++++-
T Consensus 200 ~~~~y~~~~h~--h~~Ei~~~l~~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~~~y 264 (343)
T PRK00436 200 NLRPYKVGGHR--HTPEIEQELSALAGEVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYEEFY 264 (343)
T ss_pred CeeecccCCCC--CHHHHHHHHHHhcCCEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 33477777764 344455444333237999999999999999999999999999999999998643
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=193.21 Aligned_cols=234 Identities=16% Similarity=0.150 Sum_probs=165.5
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCE-EEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK-VIQVVSN 146 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~-~I~v~~~ 146 (416)
+||||.| +|.+|+.++|.|.+.+ .++++++=+... .....+ ...|+.+. +. ...+ ..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP--~~el~~l~~s~~--sagk~~--~~~~~~l~--------------~~~~~~~-~~ 59 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHP--EVEITYLVSSRE--SAGKPV--SEVHPHLR--------------GLVDLNL-EP 59 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC--CceEEEEeccch--hcCCCh--HHhCcccc--------------ccCCcee-ec
Confidence 5899999 7999999999998764 589886632200 000001 11111111 10 0111 11
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CC-------------------CCCeEEeec
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KG-------------------DIPTYVVGV 203 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd-------------------~~ptvV~gV 203 (416)
.++.+ |.+ ++|+||.|++...+++.++..+++|+ +||+.++ ++ +.|..++++
T Consensus 60 ~~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~ 134 (346)
T TIGR01850 60 IDEEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPEL 134 (346)
T ss_pred CCHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCcc
Confidence 12222 222 79999999999999999999999986 6888775 22 478999999
Q ss_pred CccCCCCCCCeEecCCcchhhhHHHHHHHHHHhhhhcccccccccccee--EEEEEeecccccc-hhhhccchhHHHhhh
Q 014890 204 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGII--KGTMTTTHSYTGD-QRLLDASHRDLRRAR 280 (416)
Q Consensus 204 N~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~--~~~mTTiHa~T~~-Q~~lD~~~~d~rr~R 280 (416)
|.+.+.. .+||+||+|.|+++...|+||++.+ .|+ +..++|++++||. ....+..+-..+...
T Consensus 135 n~~~i~~-~~iianPgC~~t~~~l~L~PL~~~~-------------~i~~~~i~v~~~sgvSGaG~~~~~~~~~~~~~~~ 200 (346)
T TIGR01850 135 HREEIKG-ARLIANPGCYPTATLLALAPLLKEG-------------LIDPTSIIVDAKSGVSGAGRKASPANHFPEVNEN 200 (346)
T ss_pred CHHHhCC-CcEEEcCCcHHHHHHHHHHHHHHcC-------------CCCCCcEEEEEEEECcccCcCccccccchhhcCC
Confidence 9988764 6799999999999999999999998 786 7899999999999 456665443222222
Q ss_pred ccccccccCCCChHHHHHH----Hc-ccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcc
Q 014890 281 AAALNIVPTSTGAAKAVAL----VL-PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 281 aaa~NIIPt~tGaakav~k----Vl-PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa 346 (416)
-.+.|+.|+. +..++.+ ++ +++ +++.+++|||+.+||+..++++++++++.||+.++|+++-
T Consensus 201 ~~~y~~~~h~--h~~Ei~~~l~~~~~~~~--~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~~~y 267 (346)
T TIGR01850 201 LRPYKVTGHR--HTPEIEQELGRLAGGKV--KVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYEEFY 267 (346)
T ss_pred eeeeccCCcC--cHHHHHHHHHHhcCCCC--CEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHHHHh
Confidence 2234555543 2333333 32 333 4899999999999999999999999999999999999754
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=191.84 Aligned_cols=237 Identities=11% Similarity=0.088 Sum_probs=168.4
Q ss_pred ccceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 66 QAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 66 ~m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
.|++||+|.| +|.+|+.++|.|.+++ .++|+.+-.- .. .|+- +. .....+.+....-+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP--~~el~~l~s~---~s----------aG~~---i~---~~~~~l~~~~~~~~ 94 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHP--DFEITVMTAD---RK----------AGQS---FG---SVFPHLITQDLPNL 94 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCC--CCeEEEEECh---hh----------cCCC---ch---hhCccccCccccce
Confidence 4778999999 8999999999999884 4888777531 00 0110 00 00000111111111
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCC--------CCeEEeecCccC-CC--
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGD--------IPTYVVGVNADA-YK-- 209 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~--------~ptvV~gVN~~~-y~-- 209 (416)
..-++. .| .++|+||.|+|...+.+.++. +++|+ +||+.++ +++ .|..++++|.+. |.
T Consensus 95 ~~~~~~--~~--~~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglp 167 (381)
T PLN02968 95 VAVKDA--DF--SDVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLT 167 (381)
T ss_pred ecCCHH--Hh--cCCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccc
Confidence 111222 23 379999999999999999888 57775 6788776 334 688999999874 43
Q ss_pred -------CCCCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccce--eEEEEEeecccccc-hhhhccch-hHHHh
Q 014890 210 -------PDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGI--IKGTMTTTHSYTGD-QRLLDASH-RDLRR 278 (416)
Q Consensus 210 -------~~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI--~~~~mTTiHa~T~~-Q~~lD~~~-~d~rr 278 (416)
...+||+||+|.|++++..|+||++++ +| ++..+++++++||. ....+..+ .+...
T Consensus 168 E~~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~-------------~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~ 234 (381)
T PLN02968 168 ELQREEIKSARLVANPGCYPTGIQLPLVPLVKAG-------------LIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAE 234 (381)
T ss_pred hhCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcC-------------CCCCceEEEEEeeeccccCcccchhhhHHHhcc
Confidence 235799999999999999999999999 99 78999999999999 55555422 22111
Q ss_pred -hhccccccccCCCChHHHHHHHc-ccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhc
Q 014890 279 -ARAAALNIVPTSTGAAKAVALVL-PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES 345 (416)
Q Consensus 279 -~Raaa~NIIPt~tGaakav~kVl-PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~a 345 (416)
-|+.+.|..|+..-.-+.+.+++ +++ +++.+++|||+.+||+..++++++++++.+|+.++|+++
T Consensus 235 n~~~y~~~~h~h~pEie~~~~~~~~~~~--~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~~~ 301 (381)
T PLN02968 235 GIGAYGVTRHRHVPEIEQGLADAAGSKV--TPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLKER 301 (381)
T ss_pred cceeeccCCCCCcchHHHHHHHHhCCCC--CEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHHHh
Confidence 25667777776533222233332 444 499999999999999999999999999999999999995
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-17 Score=164.00 Aligned_cols=219 Identities=14% Similarity=0.077 Sum_probs=159.3
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
|++||||.| +|-+|+.++|.|.+++ .++++++-.. .+..+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp--~~~l~~~~s~--------------------------~~~~~----------- 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRS--DIELLSIPEA--------------------------KRKDA----------- 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCC--CeEEEEEecC--------------------------CCCcc-----------
Confidence 679999999 9999999999998886 4888776421 00000
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCC--CCCCeEecCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYK--PDEPIISNAS 219 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~--~~~~IISnaS 219 (416)
. +.+..|. ++|+||.|++...+++++++..++|+ +||+.++ +++.|..++++|++..+ ...++|+||+
T Consensus 42 -~-~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPg 115 (313)
T PRK11863 42 -A-ARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPG 115 (313)
T ss_pred -c-Cchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCC
Confidence 0 1111232 68999999999999999999889998 6898886 45799999999975332 2467999999
Q ss_pred cchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccc---cc-hhhhccchhHHHhhhccccccccCCCC-h-
Q 014890 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYT---GD-QRLLDASHRDLRRARAAALNIVPTSTG-A- 293 (416)
Q Consensus 220 CTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T---~~-Q~~lD~~~~d~rr~Raaa~NIIPt~tG-a- 293 (416)
|.+++++..|+||+++. .|++...++++++| |. .+..+..+.+ . -....|++|..-+ .
T Consensus 116 C~~Ta~~laL~PL~~~~-------------li~~~~~i~i~a~SG~SGAG~~~~~~~~~~--~-~~~~~n~~~Y~~~~~H 179 (313)
T PRK11863 116 CYPTGAIALLRPLVDAG-------------LLPADYPVSINAVSGYSGGGKAMIAAYEAA--P-DGKAPAFRLYGLGLAH 179 (313)
T ss_pred cHHHHHHHHHHHHHHcC-------------CcccCceEEEEEccccccCCccchHHHhhh--h-hhhccCeeeccCCcCC
Confidence 99999999999999976 56555568888885 44 4444433300 0 1246789998755 2
Q ss_pred --HHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEE---ccCCCHHHHHHHHHhccc
Q 014890 294 --AKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQV---SKKTFAEEVNAAFRESAD 347 (416)
Q Consensus 294 --akav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l---~k~vs~eeV~~a~~~aa~ 347 (416)
..++.+.+-.+. ++.-+..-+|+.+|++..+++++ +++++.+|+.++++++-+
T Consensus 180 rH~pEi~~~l~~~~-~~~F~Phl~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~ 237 (313)
T PRK11863 180 KHLPEMQAHAGLAR-RPIFTPSVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYA 237 (313)
T ss_pred cchHHHHHHhcccc-CcEEEeeEccccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcC
Confidence 344445443321 22223334799999999999997 888999999999998643
|
|
| >KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=148.68 Aligned_cols=226 Identities=19% Similarity=0.227 Sum_probs=162.6
Q ss_pred eEE-EEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECC---------
Q 014890 70 KVA-ING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG--------- 138 (416)
Q Consensus 70 kVa-ING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G--------- 138 (416)
|+| |.| +|.+|++++-.|..++ .++|....- | -+ +.|+...+.|
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP--~f~ikvLgA--------------S--------~R-SAGK~ya~a~~wkqt~~lp 59 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHP--YFSIKVLGA--------------S--------KR-SAGKRYAFAGNWKQTDLLP 59 (361)
T ss_pred cccceeeccchhHHHHHHHhccCC--cceeeeecc--------------c--------cc-ccCCceEecccchhccccc
Confidence 566 999 9999999998887764 466533321 1 12 4444455555
Q ss_pred ---EEEEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCC-
Q 014890 139 ---KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP- 210 (416)
Q Consensus 139 ---~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~- 210 (416)
..+.|. +-+++.| .++|||+.+.+.-...|.-+...++|. +|+|+.. .+++|++||.||++.++.
T Consensus 60 ~~~~e~~V~-ec~~~~F----~ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~i 132 (361)
T KOG4777|consen 60 ESAHEYTVE-ECTADSF----NECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGI 132 (361)
T ss_pred chhhhhhHh-hcChhhc----ccccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhh
Confidence 334443 2345544 489999999999999988888999998 8998875 357999999999997653
Q ss_pred ---------C-CCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchh-hhccchhHHHhh
Q 014890 211 ---------D-EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQR-LLDASHRDLRRA 279 (416)
Q Consensus 211 ---------~-~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~-~lD~~~~d~rr~ 279 (416)
. --||+|++|+|..++..||+||++|- .|++..++|||+.+|..- ..-+. -|
T Consensus 133 k~~~~~~k~~~G~iI~nsNCSTa~~v~plkpL~~~fg------------pi~~~~v~t~QAiSGAG~apgv~~-vd---- 195 (361)
T KOG4777|consen 133 KVGLDTGKMGKGAIIANSNCSTAICVMPLKPLHHHFG------------PIKRMVVSTYQAISGAGAAPGVEL-VD---- 195 (361)
T ss_pred eeccccCCCCCceEEecCCCCeeeEEeechhHHhhcc------------chhhhhhhhhhhhccCCcCCCchH-HH----
Confidence 1 13999999999999999999999992 488889999999999832 11111 11
Q ss_pred hccccccccCCCChHH----HHHHHc-----cccc------CCeeeEEEeeCcccceEEEEEEEEccCC--CHHHHHHHH
Q 014890 280 RAAALNIVPTSTGAAK----AVALVL-----PALK------GKLNGIALRVPTPNVSVVDLVVQVSKKT--FAEEVNAAF 342 (416)
Q Consensus 280 Raaa~NIIPt~tGaak----av~kVl-----PeL~------gkl~g~avRVPt~~vs~vdl~v~l~k~v--s~eeV~~a~ 342 (416)
...||+|-..|-.. +..++| |-+. -+++..|-|||+.++|+.-+...+..++ +.+|+.+++
T Consensus 196 --ildnilp~iggee~k~ewet~kiL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l 273 (361)
T KOG4777|consen 196 --ILDNILPGIGGEENKFEWETAKILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLL 273 (361)
T ss_pred --HHHhhcCCCCccchhhhHHHHHhhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHH
Confidence 23488887755431 223444 2121 2356789999999999999999998554 589999999
Q ss_pred Hhcc
Q 014890 343 RESA 346 (416)
Q Consensus 343 ~~aa 346 (416)
.+..
T Consensus 274 ~eyv 277 (361)
T KOG4777|consen 274 FEYV 277 (361)
T ss_pred Hhcc
Confidence 8876
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=142.94 Aligned_cols=218 Identities=13% Similarity=0.078 Sum_probs=158.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
.||+|.| .|-.|..++|.|...+ ++|++.+..-.. ++ ..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP--~~el~~l~s~~~---------~~-----------------------------~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD--DIELLSIAPDRR---------KD-----------------------------AA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC--CeEEEEEecccc---------cC-----------------------------cC
Confidence 4899999 8999999999998875 599988863200 00 01
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCC--CCCCeEecCCcc
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYK--PDEPIISNASCT 221 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~--~~~~IISnaSCT 221 (416)
+++++ + .++|+||.|++...++++++...++|+ +||+.++ +++.|..+|++|.+..+ +..++||||+|.
T Consensus 42 ~~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 42 ERAKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred CHhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 11111 1 268999999999999999999888888 6898876 44799999999866332 246899999999
Q ss_pred hhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeeccccc---c-hhhhccchhHHHhhhccccccccCCCC----h
Q 014890 222 TNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTG---D-QRLLDASHRDLRRARAAALNIVPTSTG----A 293 (416)
Q Consensus 222 Tn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~---~-Q~~lD~~~~d~rr~Raaa~NIIPt~tG----a 293 (416)
+++++..|+||.++. .|++...+++++.|| . ....+..++..+.. ....|+-|-.-+ +
T Consensus 117 aTa~~LaL~PL~~~~-------------li~~~~~~~~~a~SG~SGAGr~~~~~l~~q~~~~-e~~~~~~~Y~~~~~HrH 182 (310)
T TIGR01851 117 PTGFIALMRPLVEAG-------------ILPADFPITINAVSGYSGGGKAMIADYEQGSADN-PSLQPFRIYGLALTHKH 182 (310)
T ss_pred HHHHHHHHHHHHHcC-------------CccccceEEEEeccccCccChhhhHHhhhcccch-hhccCceeccCCCCCCc
Confidence 999999999999987 676666799999987 3 44444433211100 124456565433 3
Q ss_pred HHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEE---ccCCCHHHHHHHHHhcc
Q 014890 294 AKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQV---SKKTFAEEVNAAFRESA 346 (416)
Q Consensus 294 akav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l---~k~vs~eeV~~a~~~aa 346 (416)
..++...+-.+ -++.-+..-+|..+|=+..+++++ +++++.+|+.++|+++=
T Consensus 183 ~pEi~q~l~~~-~~v~FtPhl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y 237 (310)
T TIGR01851 183 LPEMRVHSGLA-LPPIFTPAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALADYY 237 (310)
T ss_pred HHHHHHHhCCC-CCEEEEeEEccccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHH
Confidence 34444444222 246677788999999999999999 88899999999999853
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-13 Score=135.40 Aligned_cols=164 Identities=23% Similarity=0.213 Sum_probs=115.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||.|+|.||+.++..+... +.++++++-|. +++... +++.-.+|.-. .++|.+- ++ .
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~--~~velvAVvdi-d~es~g--la~A~~~Gi~~-----------~~~~ie~-LL--~ 64 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRS--EHLEPGAMVGI-DPESDG--LARARRLGVAT-----------SAEGIDG-LL--A 64 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcC--CCcEEEEEEeC-ChhhHH--HHHHHHcCCCc-----------ccCCHHH-HH--h
Confidence 68999999999999988888764 35999999986 333111 11111122100 0111000 00 1
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCC--CCCeEecCCcchhhh
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP--DEPIISNASCTTNCL 225 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~--~~~IISnaSCTTn~L 225 (416)
+| +|. ++|+|++|||....++.+++.+++|+ .+|+..+.-..|++||+||.+.... ..++|+|++|+|+.+
T Consensus 65 ~~---~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~ 137 (302)
T PRK08300 65 MP---EFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPI 137 (302)
T ss_pred Cc---CCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHH
Confidence 11 232 68999999999999999999999998 6676654336899999999887553 358999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccccceeEEEEEeecccc-c--chhhhccc
Q 014890 226 APFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYT-G--DQRLLDAS 272 (416)
Q Consensus 226 ap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T-~--~Q~~lD~~ 272 (416)
+..|+++++ . ++.+.. +||+|.+ + ...-+|+.
T Consensus 138 v~Al~~v~~-~-------------~~~eIv-at~~s~s~g~gtr~nidE~ 172 (302)
T PRK08300 138 VAAVSRVAP-V-------------HYAEIV-ASIASKSAGPGTRANIDEF 172 (302)
T ss_pred HHHhcccCc-C-------------ceeeee-eeehhhccCCcccccHHHH
Confidence 999999764 3 577766 9999998 3 35667754
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.1e-11 Score=118.89 Aligned_cols=162 Identities=21% Similarity=0.208 Sum_probs=113.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||.|.|+||+..+..+.+.+ ++++++|-|. +++... +++...+|. ...++|.+.-+ .
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~--~~elvaV~d~-d~es~~--la~A~~~Gi-----------~~~~~~~e~ll---~ 61 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSE--HLEMVAMVGI-DPESDG--LARARELGV-----------KTSAEGVDGLL---A 61 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCC--CcEEEEEEeC-CcccHH--HHHHHHCCC-----------CEEECCHHHHh---c
Confidence 479999999999998877777643 4999999875 332211 000111221 01122211011 1
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCC--CCCeEecCCcchhhh
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP--DEPIISNASCTTNCL 225 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~--~~~IISnaSCTTn~L 225 (416)
+.++|+|++||+.....+.+...+++|. .||.-.|.. ..|++|+.||.+.... ..++|++++|.|+.+
T Consensus 62 --------~~dIDaV~iaTp~~~H~e~a~~al~aGk-~VIdekPa~-~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~ 131 (285)
T TIGR03215 62 --------NPDIDIVFDATSAKAHARHARLLAELGK-IVIDLTPAA-IGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPI 131 (285)
T ss_pred --------CCCCCEEEECCCcHHHHHHHHHHHHcCC-EEEECCccc-cCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHH
Confidence 1268999999999999999999999996 444444544 5899999999886543 368999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccccceeEEEEEeeccccc---chhhhccch
Q 014890 226 APFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTG---DQRLLDASH 273 (416)
Q Consensus 226 ap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~---~Q~~lD~~~ 273 (416)
+..++.+++.+ .+ -.++||++.+. ....+|...
T Consensus 132 ~~al~r~~d~~-------------~~--~iv~ti~s~S~g~g~r~~idel~ 167 (285)
T TIGR03215 132 VAAISRVAPVH-------------YA--EIVASIASRSAGPGTRANIDEFT 167 (285)
T ss_pred HHHHHHhhccc-------------cE--EEEEEEEeeccCCCchhHHHHHH
Confidence 99999998876 45 46788999986 356667654
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-08 Score=99.56 Aligned_cols=235 Identities=17% Similarity=0.165 Sum_probs=148.5
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCC--ChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTG--GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~--~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
|++||+|.| .|-.|-+++|.|.+++ ++|+..+-... +.. + ...|..+.+.+ ..++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp--~ve~~~~ss~~~~g~~-~------~~~~p~l~g~~-------------~l~~ 58 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHP--DVELILISSRERAGKP-V------SDVHPNLRGLV-------------DLPF 58 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC--CeEEEEeechhhcCCc-h------HHhCccccccc-------------cccc
Confidence 568999999 8999999999999886 48966555321 100 0 01111111110 0111
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCC--C--------------C----CeEEeec
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG--D--------------I----PTYVVGV 203 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd--~--------------~----ptvV~gV 203 (416)
+.-+++.+ ...++|+||-|+....+++.++..++.|.| ||+.+.+= . . .--|||.
T Consensus 59 -~~~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGL 133 (349)
T COG0002 59 -QTIDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGL 133 (349)
T ss_pred -ccCChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccC
Confidence 12234433 234689999999999999999999999994 78877520 0 1 2455554
Q ss_pred ---CccCCCCCCCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccce---eEE-EEEeecccccch-hhhccchhH
Q 014890 204 ---NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGI---IKG-TMTTTHSYTGDQ-RLLDASHRD 275 (416)
Q Consensus 204 ---N~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI---~~~-~mTTiHa~T~~Q-~~lD~~~~d 275 (416)
|.++++ ..+.|+||.|-.+|....++||-+. || ... ++-..=.|||.- +.....|-
T Consensus 134 pEl~~e~i~-~A~lIAnPGCypTa~iLal~PL~~~--------------~ll~~~~~~ivdakSG~SGaGrk~s~~~~~- 197 (349)
T COG0002 134 PELHREKIR-GAKLIANPGCYPTAAILALAPLVKA--------------GLLDPDSPPIVDAKSGVSGAGRKASVKNHF- 197 (349)
T ss_pred cccCHHHHh-cCCEeeCCCchHHHHHHHHHHHHHc--------------CCcCCCCceEEEEeEecCcCCCCccccccc-
Confidence 333343 3579999999999999999999776 33 221 222233344442 22222221
Q ss_pred HHhhhccccccccCC---CChHHHHHHHccccc---CCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccc
Q 014890 276 LRRARAAALNIVPTS---TGAAKAVALVLPALK---GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN 348 (416)
Q Consensus 276 ~rr~Raaa~NIIPt~---tGaakav~kVlPeL~---gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~ 348 (416)
-....|+.|-. .-+..++..-+..|. ..+.-+..=+|..+|=+..+++.+++.++.+|+.+++++.=++
T Consensus 198 ----~e~~~~~~~Y~~~~HrH~pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~ 272 (349)
T COG0002 198 ----PEVNDSLRPYGLTGHRHTPEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAG 272 (349)
T ss_pred ----hhhccccccccccccCchHHHHHHhhhcccCcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHHHHhCC
Confidence 11234777754 233444555555444 3355566678999999999999999999999999999986443
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.8e-09 Score=90.04 Aligned_cols=111 Identities=27% Similarity=0.330 Sum_probs=76.9
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCC--hhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGG--VKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~--~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
||||.| +|.+|+.++|.|.+.+ +++++.+-.... -+.+... ++.+. ....+.+..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp--~~e~~~~~~~~~~~g~~~~~~------~~~~~-------------~~~~~~~~~- 58 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHP--DFELVALVSSSRSAGKPLSEV------FPHPK-------------GFEDLSVED- 58 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS--TEEEEEEEESTTTTTSBHHHT------TGGGT-------------TTEEEBEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcCC--CccEEEeeeeccccCCeeehh------ccccc-------------cccceeEee-
Confidence 799999 9999999999999854 599988865322 1112121 21111 011233322
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAY 208 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y 208 (416)
-+++.+ .++|+||.|++...+++.+++.++.|+ .||+.++ +++.|.++|++|.+.+
T Consensus 59 ~~~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i 118 (121)
T PF01118_consen 59 ADPEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQI 118 (121)
T ss_dssp TSGHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHH
T ss_pred cchhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHH
Confidence 233333 489999999999999999999999999 7888876 3468999999998765
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-07 Score=85.95 Aligned_cols=104 Identities=16% Similarity=0.257 Sum_probs=77.6
Q ss_pred HHHHHHH-hhhhccccccccccceeEEEEEeecccccc-hhhhccchhHH------------HhhhccccccccCCCC--
Q 014890 229 VKVLDQK-FVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDL------------RRARAAALNIVPTSTG-- 292 (416)
Q Consensus 229 lkvL~~~-f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~------------rr~Raaa~NIIPt~tG-- 292 (416)
|+||+++ | +++++.++|++++||. .+.+|+..+.- -....+++|++|..-+
T Consensus 1 L~PL~~~l~-------------~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~ 67 (184)
T PF02774_consen 1 LAPLHKALF-------------GLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFE 67 (184)
T ss_dssp HHHHHHTHH-------------HECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBT
T ss_pred CcchhhCcC-------------CCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcc
Confidence 6889997 9 9999999999999999 56666432111 1124589999998744
Q ss_pred -----hHHHHHHHc------ccccCCeeeEEEeeCcccceEEEEEEEEc-cCCCHHHHHHHHHhc
Q 014890 293 -----AAKAVALVL------PALKGKLNGIALRVPTPNVSVVDLVVQVS-KKTFAEEVNAAFRES 345 (416)
Q Consensus 293 -----aakav~kVl------PeL~gkl~g~avRVPt~~vs~vdl~v~l~-k~vs~eeV~~a~~~a 345 (416)
..+.+.+.+ -....+++.+|+|||+..||+..++++++ ++.+++++.++|.+.
T Consensus 68 h~h~~e~~~el~~~~~~~~~l~~~~~v~~t~~~vPv~rG~~~ti~v~~~~~~~~~~~~~~~~~~~ 132 (184)
T PF02774_consen 68 HRHEPEIEEELKMIAETRKILGFPPRVSFTCVRVPVFRGHLATIYVELKETPVDVEEIYEAFYKG 132 (184)
T ss_dssp TTSHHHBHHHHHHHHHHHHHCTETTEEEEEEEEESSSSEEEEEEEEEESSSHHHHHHHHHHHHTS
T ss_pred cCchHHHHHHHHhhccccceeeccccccccEEEEeeeeeEceeEEEEecCCHHHHHHHHHHHhCC
Confidence 233332222 11223789999999999999999999995 888889998888876
|
It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A .... |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.5e-05 Score=75.13 Aligned_cols=266 Identities=18% Similarity=0.167 Sum_probs=139.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||.|+|.|||.+++++..++ ++++|+|=|..+++.+.. + . .+....
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~p--d~ELVgV~dr~~~~~~~~----~--~----------------------~v~~~~ 52 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQP--DMELVGVFSRRGAETLDT----E--T----------------------PVYAVA 52 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCC--CcEEEEEEcCCcHHHHhh----c--C----------------------CccccC
Confidence 589999999999999999988764 499999977633332210 0 0 011111
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCC-CCCCeEecCCcchhhhH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYK-PDEPIISNASCTTNCLA 226 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~-~~~~IISnaSCTTn~La 226 (416)
+... + ..++|+|+-||+.....+.+...+++|.. ||.+-+.....|-..-.+..-.-. ..-.+|+ +--=-.+-
T Consensus 53 d~~e--~-l~~iDVViIctPs~th~~~~~~~L~aG~N-VV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~--~GwDPG~~ 126 (324)
T TIGR01921 53 DDEK--H-LDDVDVLILCMGSATDIPEQAPYFAQFAN-TVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS--TGWDPGMF 126 (324)
T ss_pred CHHH--h-ccCCCEEEEcCCCccCHHHHHHHHHcCCC-EEECCCcccCCHHHHHHHHHHHHHcCCEEEEE--CCCCcChH
Confidence 1111 1 13689999999999999999999999973 555432100000000000000000 0011222 01111334
Q ss_pred HHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhh-c---cccccccCCCChHHHHHHHc-
Q 014890 227 PFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRAR-A---AALNIVPTSTGAAKAVALVL- 301 (416)
Q Consensus 227 p~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~R-a---aa~NIIPt~tGaakav~kVl- 301 (416)
.+.+.+.+.. +-+| +.||...+.+++.|.+.-|.. + |.+=-|| .-.++..|+
T Consensus 127 si~r~~~ea~--------------lp~g-----~~yt~wG~g~s~ghs~a~~~~~Gv~~a~~~tip----~~dal~~v~~ 183 (324)
T TIGR01921 127 SINRVYGEAV--------------LPKG-----QTYTFWGPGLSQGHSDAVRRIDGVKKAVQYTLP----SEDALEKARR 183 (324)
T ss_pred HHHHHHHhcc--------------CCCC-----cceeccCCCcCchhhhhhcccCCcccceEEEEe----hHHHHHHHHc
Confidence 4555555554 4444 456666777777666543322 1 2444455 345566664
Q ss_pred ---ccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhccc---ccCCCcccccCCCeeeeccCCCCcceee
Q 014890 302 ---PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD---NELKGILSVCDEPLVSVDFRCSDVSSTV 375 (416)
Q Consensus 302 ---PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~---~~lkgil~~~~~p~VS~Df~g~~~S~i~ 375 (416)
|+|..+ ..|--..++.++.-.+.++|.+.++.-+. ..=--+--++++.+. .|+-|-+|...+
T Consensus 184 Ge~~~l~~~-----------~~h~r~~~vv~e~g~~~~~v~~~i~~~p~yf~~~~t~v~~i~~~~~~-~~~~~~~hg~~~ 251 (324)
T TIGR01921 184 GEAPELTGK-----------QTHKRQCFVVLKDGADHERVENEIRTMPDYFVGYETEVNFIDEATFD-SEHTGMPHGGHV 251 (324)
T ss_pred CCccccccc-----------cceeeeEEEEecCCCCHHHHHHHHhhCcccccCCCcEEEEeChHHHH-HhcCCCCCceEE
Confidence 444322 23445667778877789999999997652 000111122222221 256677777665
Q ss_pred eCCCCccc-CCceEEEEEEecCCcchhhhH
Q 014890 376 DSSLTLVM-GDDMVKVIAWYDNEWGYSQRV 404 (416)
Q Consensus 376 D~~~t~v~-~~~~vK~~~WyDNE~gys~R~ 404 (416)
-.+...-- +.+.+..-.=+|..--|+.+|
T Consensus 252 ~r~g~t~~~~~~~~~~~~~~~~np~~ta~v 281 (324)
T TIGR01921 252 IRTGDSGGTFNQTVEFNLKLDRNPDFTASV 281 (324)
T ss_pred EEEecCCCCcceEEEEEEecCCCHHHHHHH
Confidence 54432222 233344444367333454444
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.8e-06 Score=80.17 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=68.3
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++||||.|||.||+.+++.|.......+++++|++. +++....+.+ . .++ .
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~-~~~~~~~~~~-----------------~--------~~~--~ 52 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN-AADLPPALAG-----------------R--------VAL--L 52 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC-CHHHHHHhhc-----------------c--------Ccc--c
Confidence 6789999999999999999987653345999999885 2222212110 0 111 1
Q ss_pred cCCCCC-CCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNL-PWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i-~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+++++ .| ..|+|+||.|.-.-++++++.|++|..=+++|-..
T Consensus 53 ~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGA 96 (267)
T PRK13301 53 DGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGA 96 (267)
T ss_pred CCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhH
Confidence 334443 33 68999999999999999999999999877776443
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.2e-05 Score=67.30 Aligned_cols=112 Identities=29% Similarity=0.353 Sum_probs=67.9
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
||||.| .|.+|+.+++.+.+.+ +++++++-+. + ......++ ..|++. . + + +. .+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~--~~~l~av~~~-~-~~~~~~~~--~~~~~~----~----------~--~-~~--~~ 55 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP--DFEVVALAAS-A-RSAGKRVS--EAGPHL----K----------G--E-VV--LE 55 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCC--CceEEEEEec-h-hhcCcCHH--HHCccc----c----------c--c-cc--cc
Confidence 689999 6999999999888764 3899999432 1 11001110 011110 0 0 0 00 11
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHH---HHHHcCCCEEEEcCCC----CCCCCeEEeecCccCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAG---KHIQAGAKKVLITAPG----KGDIPTYVVGVNADAY 208 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~---~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y 208 (416)
.....|...+.|+||-|++.-...+... ..++.|. ++|+..+ .++.|..++++|.+.+
T Consensus 56 ~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 56 LEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred cccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHh
Confidence 1222344458899999999887777433 3334555 8887665 2467999999997754
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00012 Score=71.83 Aligned_cols=91 Identities=26% Similarity=0.317 Sum_probs=60.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCC-ChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~-~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||||.|+|+||+.+++.+...+ +++++++-+.. ..+.....+ .. + +.++ .
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~--~~~l~~v~~~~~~~~~~~~~~----------------~~------~--~~~~--~ 53 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDP--DLRVDWVIVPEHSIDAVRRAL----------------GE------A--VRVV--S 53 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCC--CceEEEEEEcCCCHHHHhhhh----------------cc------C--Ceee--C
Confidence 69999999999999999987754 37887775421 111111100 00 1 2222 2
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
+.+++ +..+|+|+|||+.....+.+...+++|. .|++-.|
T Consensus 54 d~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk-~Vvi~s~ 93 (265)
T PRK13303 54 SVDAL---PQRPDLVVECAGHAALKEHVVPILKAGI-DCAVISV 93 (265)
T ss_pred CHHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCC-CEEEeCh
Confidence 33334 2468999999999888899999999995 4555444
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00035 Score=70.99 Aligned_cols=143 Identities=19% Similarity=0.299 Sum_probs=76.9
Q ss_pred cceeEEEEccChhHHHHHHHHHhCC-------CCCceEEEEecCC---------ChhHHhhhhccccccccCCCceeeec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAINDTG---------GVKQASHLLKYDSTLGIFEADVKPVG 130 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~-------~~~~~vVaINd~~---------~~~~~a~LlkyDS~~G~f~~~v~~~~ 130 (416)
|++||||.|||.||+.+++.+.++. ..+++||+|-|.. +++.+ ..+-..+|.+..
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~---~~~~~~~~~~~~------ 71 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELA---LKVKEETGKLAD------ 71 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHH---HHHHhccCCccc------
Confidence 6799999999999999999987652 1148999997731 12221 111111111000
Q ss_pred CCeEEECCEEEEEEeccCCCCCCCCCccccEEEcCCCCCCC-----HhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCc
Q 014890 131 TDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVD-----REGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNA 205 (416)
Q Consensus 131 ~~~i~v~G~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s-----~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~ 205 (416)
+.+.. ...++.++ ..+.++|+|+|||+.... .+.+...+++|. -||++.-+ |+-. +.
T Consensus 72 -----~~~~~----~~~d~~el-l~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gk--hVVtaNK~---pla~---~~ 133 (341)
T PRK06270 72 -----YPEGG----GEISGLEV-IRSVDADVVVEATPTNIETGEPALSHCRKALERGK--HVVTSNKG---PLAL---AY 133 (341)
T ss_pred -----Ccccc----ccCCHHHH-hhccCCCEEEECCcCcccccchHHHHHHHHHHCCC--EEEcCCcH---HHHh---hH
Confidence 00000 00122221 123468999999987554 567778889986 45554211 1100 11
Q ss_pred cCCC---CCCCeEecCCcchhhhHHHHHHHHHHh
Q 014890 206 DAYK---PDEPIISNASCTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 206 ~~y~---~~~~IISnaSCTTn~Lap~lkvL~~~f 236 (416)
+.+. ...++.=--.++...-.|+++.|.+..
T Consensus 134 ~eL~~~A~~~g~~~~~ea~v~~glPii~~l~~~l 167 (341)
T PRK06270 134 KELKELAKKNGVRFRYEATVGGAMPIINLAKETL 167 (341)
T ss_pred HHHHHHHHHcCCEEEEeeeeeechhHHHHHHhhc
Confidence 1111 111221112355666789999998765
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00045 Score=60.30 Aligned_cols=95 Identities=21% Similarity=0.224 Sum_probs=53.9
Q ss_pred eeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
|||+|+|+ ||+||.+++.+.+++ +++|+++-+....+.. .-|. |.+.+ .....+.++ .
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~--~~~lv~~v~~~~~~~~----g~d~--g~~~~-----------~~~~~~~v~--~ 59 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESP--GFELVGAVDRKPSAKV----GKDV--GELAG-----------IGPLGVPVT--D 59 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHST--TEEEEEEEETTTSTTT----TSBC--HHHCT-----------SST-SSBEB--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC--CcEEEEEEecCCcccc----cchh--hhhhC-----------cCCcccccc--h
Confidence 69999998 999999999999865 4999999875321110 0011 10000 000111221 2
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVI 187 (416)
+.+++ ...+|++||.|-.....+.++..++.|.+-|+
T Consensus 60 ~l~~~---~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~Vi 96 (124)
T PF01113_consen 60 DLEEL---LEEADVVIDFTNPDAVYDNLEYALKHGVPLVI 96 (124)
T ss_dssp -HHHH---TTH-SEEEEES-HHHHHHHHHHHHHHT-EEEE
T ss_pred hHHHh---cccCCEEEEcCChHHhHHHHHHHHhCCCCEEE
Confidence 22222 12489999999666666677777778875433
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00047 Score=67.13 Aligned_cols=94 Identities=27% Similarity=0.317 Sum_probs=66.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
++|||+|+|+||+.+++.+.+.. .+++++++=|. +.+..-++. .+. .+. .
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-~~~e~v~v~D~-~~ek~~~~~--~~~------------------~~~--------~ 50 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-VDFELVAVYDR-DEEKAKELE--ASV------------------GRR--------C 50 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC-cceeEEEEecC-CHHHHHHHH--hhc------------------CCC--------c
Confidence 58999999999999999877542 35999999886 444444443 121 111 1
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
+.+||-.-..+|+++||.+..--++..++.|++|..-+|+|-..
T Consensus 51 ~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGA 94 (255)
T COG1712 51 VSDIDELIAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGA 94 (255)
T ss_pred cccHHHHhhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechh
Confidence 11222112478999999999999999999999999877777654
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00064 Score=66.80 Aligned_cols=95 Identities=22% Similarity=0.323 Sum_probs=60.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
|||+|+| +|++|+.+++.+.+.+ ++++|++-|..+++.. .+|. +.+.+. .. .| +.++ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~--~~elvav~d~~~~~~~----~~~~--~~~~~~----~~-----~g--v~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAE--GLQLVAAFERHGSSLQ----GTDA--GELAGI----GK-----VG--VPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC--CCEEEEEEecCCcccc----CCCH--HHhcCc----Cc-----CC--ceee--C
Confidence 7999999 7999999999998764 4999999873222111 0010 110000 00 01 2222 2
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
+++.+ ...+|+|||+|......+.+...+++|.. ||+
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 33333 13589999999998888999999999964 555
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.001 Score=65.17 Aligned_cols=92 Identities=25% Similarity=0.312 Sum_probs=61.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
|||||.|+|+||+.+++.+.... .+++++++-|. +++....+.+ .+| ..++ .+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~-~~~elv~v~d~-~~~~a~~~a~---~~~--------------------~~~~--~~ 54 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGR-INAELYAFYDR-NLEKAENLAS---KTG--------------------AKAC--LS 54 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCC-CCeEEEEEECC-CHHHHHHHHH---hcC--------------------CeeE--CC
Confidence 69999999999999999988653 14899998875 3433333221 010 0111 23
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
.+++. .++|+|++|++...-.+.+...+++|. .|++..+
T Consensus 55 ~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk-~Vvv~s~ 93 (265)
T PRK13304 55 IDELV---EDVDLVVECASVNAVEEVVPKSLENGK-DVIIMSV 93 (265)
T ss_pred HHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCC-CEEEEch
Confidence 33332 268999999999888888888899885 4555433
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0014 Score=64.71 Aligned_cols=91 Identities=22% Similarity=0.247 Sum_probs=60.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||.|+|+||+.+++.+... .+++++++|-|. +++....+.+ .+|. .. . ..
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr-~~~~a~~~a~---~~g~----~~---------------~--~~ 59 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVR-DPQRHADFIW---GLRR----PP---------------P--VV 59 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECC-CHHHHHHHHH---hcCC----Cc---------------c--cC
Confidence 58999999999999999998763 134899999875 3333222211 0110 00 0 12
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
+++++- .++|+|++|++...-.+.+...+++|. .|++
T Consensus 60 ~~eell---~~~D~Vvi~tp~~~h~e~~~~aL~aGk-~Vi~ 96 (271)
T PRK13302 60 PLDQLA---THADIVVEAAPASVLRAIVEPVLAAGK-KAIV 96 (271)
T ss_pred CHHHHh---cCCCEEEECCCcHHHHHHHHHHHHcCC-cEEE
Confidence 233332 257999999999888899999999885 3444
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0006 Score=71.31 Aligned_cols=95 Identities=26% Similarity=0.421 Sum_probs=57.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC-------CCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKV 140 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~-------~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~ 140 (416)
++||||.|+|.||+.+++.+.++. ..+++|++|-+. +++.. .-+ . ..+
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~-~~~~~-~~~-------------~--------~~~-- 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR-DLEKD-RGV-------------D--------LPG-- 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC-Chhhc-cCC-------------C--------Ccc--
Confidence 689999999999999999886542 125899998764 22110 000 0 000
Q ss_pred EEEEeccCCCCCCCCCccccEEEcCCCCC-CCHhhHHHHHHcCCCEEEEcCC
Q 014890 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVF-VDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 141 I~v~~~~~p~~i~W~~~gvDiVie~TG~f-~s~~~a~~hl~aGAkkVIIsap 191 (416)
..++ .+++++ ..+.++|+|+||||.. ...+.....+++|. .||..++
T Consensus 58 ~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVtaNK 105 (426)
T PRK06349 58 ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK-HVVTANK 105 (426)
T ss_pred ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEEcCH
Confidence 0111 223222 1234789999999864 34677778888884 5554444
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.003 Score=63.55 Aligned_cols=93 Identities=25% Similarity=0.389 Sum_probs=62.7
Q ss_pred ceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||.|+|.||+. .++.+...+ +++++||-|. +.+.++- +| + + ++++
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~--~~~l~av~d~-~~~~~~~--~~----~-----------------~--~~~~-- 53 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTP--GLELAAVSSS-DATKVKA--DW----P-----------------T--VTVV-- 53 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCC--CCEEEEEECC-CHHHHHh--hC----C-----------------C--Ccee--
Confidence 589999999999985 566665543 4999999986 3333220 11 0 0 0111
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ -.+.++|+|+-||+...-.+.+...+++| |.|++--|-
T Consensus 54 ~~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (346)
T PRK11579 54 SEPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVVDKPF 97 (346)
T ss_pred CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEeCCC
Confidence 122222 11237899999999999999999999999 578886664
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0014 Score=63.99 Aligned_cols=88 Identities=22% Similarity=0.262 Sum_probs=57.5
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+|||+|+|+ |++|+.+++.+.+.+ ++++|++-|. +++..... + ...+.+ .
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~--~~elvav~d~-~~~~~~~~---~---------------------~~~i~~--~ 51 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAE--DLELVAAVDR-PGSPLVGQ---G---------------------ALGVAI--T 51 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCC--CCEEEEEEec-CCcccccc---C---------------------CCCccc--c
Confidence 379999996 999999999887654 4999998875 11111000 0 000111 1
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
.+.+.+- .++|+|+|+|......+.+...+++|.. |++
T Consensus 52 ~dl~~ll---~~~DvVid~t~p~~~~~~~~~al~~G~~-vvi 89 (257)
T PRK00048 52 DDLEAVL---ADADVLIDFTTPEATLENLEFALEHGKP-LVI 89 (257)
T ss_pred CCHHHhc---cCCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence 2232221 1589999999877778888999999974 444
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0012 Score=67.23 Aligned_cols=166 Identities=22% Similarity=0.313 Sum_probs=84.9
Q ss_pred cceeEEEEccChhHHHHHHHHHhCC-------CCCceEEEEecCCC-h---h--HHhhhhccccccccCCCceeeecCCe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAINDTGG-V---K--QASHLLKYDSTLGIFEADVKPVGTDG 133 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~-------~~~~~vVaINd~~~-~---~--~~a~LlkyDS~~G~f~~~v~~~~~~~ 133 (416)
|++||+|.|||.||+.+++.+.++. .-+++|++|.|... . + .+..+++|-..+|... .
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~---------~ 71 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS---------N 71 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchh---------h
Confidence 6799999999999999999987632 12489999987310 0 0 0011111111111100 0
Q ss_pred EEECCEEEEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCC
Q 014890 134 ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEP 213 (416)
Q Consensus 134 i~v~G~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~ 213 (416)
+.-+. .. ...++.++ +.+..+|+|||+|+.....+...+.++.|. -|+++. |......-..+..-.-....+
T Consensus 72 ~~~~~---~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~--~VVtan-K~~la~~~~el~~la~~~~~~ 143 (336)
T PRK08374 72 WGNDY---EV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGK--SVVTSN-KPPIAFHYDELLDLANERNLP 143 (336)
T ss_pred ccccc---cc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCC--cEEECC-HHHHHhCHHHHHHHHHHcCCe
Confidence 00000 00 00012222 234578999999998777777778888887 344432 210000000010000001122
Q ss_pred eEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEE
Q 014890 214 IISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGT 255 (416)
Q Consensus 214 IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~ 255 (416)
+.- +.+.-.=.|+++.|.+.+ ..++| ..+.||-.|+
T Consensus 144 ~~~--ea~v~~GiPii~~l~~~l---~g~~i-~~i~GIlnGT 179 (336)
T PRK08374 144 YLF--EATVMAGTPIIGLLRENL---LGDTV-KRIEAVVNAT 179 (336)
T ss_pred EEE--eccccccCCchHHHHhhc---cccce-EEEEEEEech
Confidence 331 334445689999998766 34554 5566777774
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0019 Score=54.34 Aligned_cols=95 Identities=34% Similarity=0.426 Sum_probs=66.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
|||||+|+|.+|+..++.+.... +++++++|-|. +++......+ .+|- . .+ .+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~-~~~~v~~v~d~-~~~~~~~~~~---~~~~---~-----------------~~--~~ 53 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS-PDFEVVAVCDP-DPERAEAFAE---KYGI---P-----------------VY--TD 53 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT-TTEEEEEEECS-SHHHHHHHHH---HTTS---E-----------------EE--SS
T ss_pred CEEEEECCcHHHHHHHHHHHhcC-CCcEEEEEEeC-CHHHHHHHHH---Hhcc---c-----------------ch--hH
Confidence 69999999999999999998873 45999999987 4433322211 1110 0 11 11
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+++ ..+.++|+|+-||+...-.+.+...+++|. .|++.-|-
T Consensus 54 ~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 54 LEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp HHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred HHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 2222 112378999999999999999999999998 78887664
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0045 Score=63.00 Aligned_cols=155 Identities=19% Similarity=0.278 Sum_probs=79.4
Q ss_pred eeEEEEccChhHHHHHHHHHhC-----CCCCceEEEEecCCC----hh--HHhhhhccccccccCCCceeeecCCeEEEC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGR-----KDSPLEVVAINDTGG----VK--QASHLLKYDSTLGIFEADVKPVGTDGISVD 137 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~-----~~~~~~vVaINd~~~----~~--~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~ 137 (416)
|||+|.|||.||+.+++.+.++ ..-+++||+|-|... ++ .+..+++|-.. |. + .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~------------l--~ 65 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GR------------L--E 65 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-Cc------------c--c
Confidence 4899999999999999998774 113589999987411 00 00111111000 10 0 0
Q ss_pred CEEEEEEeccCCCCCCCCCccccEEEcCCCCCCC----HhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCC---C
Q 014890 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVD----REGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYK---P 210 (416)
Q Consensus 138 G~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s----~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~---~ 210 (416)
..... .-++.++ + +...|+|||||+...+ .+..+..+++|. -||++. |. |+-.. .+.+. .
T Consensus 66 ~~~~~---~~~~~~l-l-~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~--hVVTaN-Kg--alA~~---~~eL~~lA~ 132 (326)
T PRK06392 66 EIDYE---KIKFDEI-F-EIKPDVIVDVTPASKDGIREKNLYINAFEHGI--DVVTAN-KS--GLANH---WHDIMDSAS 132 (326)
T ss_pred cCCCC---cCCHHHH-h-cCCCCEEEECCCCCCcCchHHHHHHHHHHCCC--EEEcCC-HH--HHHhh---HHHHHHHHH
Confidence 00000 0011111 1 2468999999975322 234467788887 566654 32 22111 11111 1
Q ss_pred CCCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEE
Q 014890 211 DEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGT 255 (416)
Q Consensus 211 ~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~ 255 (416)
.++.-=--..|.-+=.|+++.|+... ..++| ..+.||-.|+
T Consensus 133 ~~g~~~~~eatV~~g~Pii~~~~~~~---~g~~i-~~i~GilnGT 173 (326)
T PRK06392 133 KNRRIIRYEATVAGGVPLFSLRDYST---LPSRI-KNFRGIVSST 173 (326)
T ss_pred HcCCeEEEeeeeeeccchhhhhhhhc---ccCCE-EEEEEEEeCh
Confidence 11111111345566789999996544 33443 5556777774
|
|
| >PRK06813 homoserine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0027 Score=65.10 Aligned_cols=163 Identities=16% Similarity=0.249 Sum_probs=81.3
Q ss_pred cceeEEEEccChhHHHHHHHHHhCC-------CCCceEEEEecCCChhHHhhhhcccccccc-CCCceeeecCCeEEECC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAINDTGGVKQASHLLKYDSTLGI-FEADVKPVGTDGISVDG 138 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~-------~~~~~vVaINd~~~~~~~a~LlkyDS~~G~-f~~~v~~~~~~~i~v~G 138 (416)
|+++|+|.|||.||+.+++.+.++. .-+++|++|-+... .+ |+. .|- ++.-++ .......+.
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~-----~~--~~~-~gi~~~~~l~-~~~~~~~~~- 70 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNV-----AI--HNE-DGLSIHHLLR-YGGGSCAIE- 70 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecch-----hh--ccc-cCCChhhhhh-ccccccchh-
Confidence 5689999999999999999987542 12588888865310 01 111 010 000000 000000000
Q ss_pred EEEEEEeccCCCCCCCCCccccEEEcCCCCC-----CCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCC---C
Q 014890 139 KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVF-----VDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYK---P 210 (416)
Q Consensus 139 ~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f-----~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~---~ 210 (416)
... ..++.++--....+|+|||||+.- ...++....|++|. -|||+. |. |+--.+ +.+. .
T Consensus 71 ---~~~-~~~~~~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~--hVVTAN-K~--~la~~~---~eL~~lA~ 138 (346)
T PRK06813 71 ---KYI-EHHPEERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKM--DIVAIS-KG--ALVTNW---REINEAAK 138 (346)
T ss_pred ---hhh-ccChHHHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCC--eEEcCC-cH--HHhccH---HHHHHHHH
Confidence 000 011111100123689999998653 33455567788887 577765 32 211111 1111 1
Q ss_pred CCCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEE
Q 014890 211 DEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGT 255 (416)
Q Consensus 211 ~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~ 255 (416)
.++.-=--.+|.-+=.|+++.|+..+ ..++| ..+.||-.|+
T Consensus 139 ~~g~~~~yEasVggGiPiI~~l~~~~---~g~~I-~~i~GIlNGT 179 (346)
T PRK06813 139 IANVRIRYSGATAAALPTLDIGQFSL---AGCHI-EKIEGILNGT 179 (346)
T ss_pred HcCCeEEEeeeeeeccchHHHHhhhc---ccCcE-EEEEEEEech
Confidence 11111112345556789999996544 34444 4556777764
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.005 Score=63.00 Aligned_cols=157 Identities=22% Similarity=0.269 Sum_probs=79.8
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCCC-------CCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECC
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRKD-------SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG 138 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~~-------~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G 138 (416)
+|++||+|.|||.||+.++|.+.++++ -+++|++|-+. +.... + .+|-. +.... ..+..+.
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~-~~~~~-~--~~~~~----~~~~~-~~~~~~~--- 68 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR-DGSLV-R--DLDLL----NAEVW-TTDGALS--- 68 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec-cchhc-c--ccccc----chhhh-eeccccc---
Confidence 367999999999999999999987532 25888888764 11000 0 01110 00000 0000000
Q ss_pred EEEEEEeccCCCCCCCCCccccEEEcCCCC-CCCHh---hHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCC--
Q 014890 139 KVIQVVSNRNPVNLPWGDLGIDLVIEGTGV-FVDRE---GAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-- 212 (416)
Q Consensus 139 ~~I~v~~~~~p~~i~W~~~gvDiVie~TG~-f~s~~---~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~-- 212 (416)
.. ..+-+ ...+|+|+|++|. ..+.+ ...+.++.|- -|+|+- |. |+=..+-.-..+....
T Consensus 69 --------~~-~~~~~-~~~~dvvve~~~~d~~~~~~~~~~~~al~~Gk--hVVTaN-K~--~lA~~~~el~~~A~~~g~ 133 (333)
T COG0460 69 --------LG-DEVLL-DEDIDVVVELVGGDVEPAEPADLYLKALENGK--HVVTAN-KA--LLALHYHELREAAEKNGV 133 (333)
T ss_pred --------cc-Hhhhc-cccCCEEEecCcccCCchhhHHHHHHHHHcCC--eEECCC-ch--HhHhhHHHHHHHHHHhCC
Confidence 00 11212 3478999999998 33333 4456666665 677754 32 1111100000010000
Q ss_pred CeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEE
Q 014890 213 PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGT 255 (416)
Q Consensus 213 ~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~ 255 (416)
.+-= --|.-+=.|+++.|.+.. ..++ +..+.||..|+
T Consensus 134 ~l~y--EAtV~gGiPiI~~lr~~l---~g~~-I~~i~GIlNGT 170 (333)
T COG0460 134 KLLY--EATVGGGIPIIKLLRELL---AGDE-ILSIRGILNGT 170 (333)
T ss_pred eEEE--EeeeccCcchHHHHHhhc---ccCc-eEEEEEEEecc
Confidence 1110 112334479999999887 2344 34556777774
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.013 Score=58.16 Aligned_cols=140 Identities=22% Similarity=0.229 Sum_probs=78.8
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEE-ECCEEEEEE
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGIS-VDGKVIQVV 144 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~-v~G~~I~v~ 144 (416)
|+|||+|+| .||.||++++++.+.+ ++++++.=+..+.. ..|+ +.+.+. ++-..+.+.
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~--~~~L~aa~~~~~~~----------~~g~--------d~ge~~g~~~~gv~v~ 60 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAP--DLELVAAFDRPGSL----------SLGS--------DAGELAGLGLLGVPVT 60 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCC--CceEEEEEecCCcc----------cccc--------chhhhccccccCceee
Confidence 458999999 5999999999999875 49998887631110 0111 111110 111122332
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeE--ecCCcch
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPII--SNASCTT 222 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~II--SnaSCTT 222 (416)
. + +.-.....|++||=|-...+.+.++..++.|.+-||=|...+++.-. .-+.+....+++ .|-|=-.
T Consensus 61 ~--~---~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~-----~l~~~a~~v~vv~a~NfSiGv 130 (266)
T COG0289 61 D--D---LLLVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLE-----KLREAAEKVPVVIAPNFSLGV 130 (266)
T ss_pred c--c---hhhcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHH-----HHHHHHhhCCEEEeccchHHH
Confidence 1 1 11234578999999888888888888889997666555544331100 001111123444 3444445
Q ss_pred hhhHHHHHHHHHHh
Q 014890 223 NCLAPFVKVLDQKF 236 (416)
Q Consensus 223 n~Lap~lkvL~~~f 236 (416)
|-|.-+++-.-+.|
T Consensus 131 nll~~l~~~aak~l 144 (266)
T COG0289 131 NLLFKLAEQAAKVL 144 (266)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555555555
|
|
| >KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.022 Score=56.45 Aligned_cols=285 Identities=20% Similarity=0.234 Sum_probs=140.5
Q ss_pred cccccccceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCE
Q 014890 61 RKVAAQAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK 139 (416)
Q Consensus 61 ~~~~~~m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~ 139 (416)
.++..+.++|||..| -|--|+++.|.+-.. +.+||..+..- +..-.-|+ +-++ . ++. ...+..
T Consensus 12 ~~~~~~k~~rv~LlGArGYTGknlv~Lin~H--Pylevthvssr---el~Gqkl~-~ytk--~--eiq---y~~lst--- 75 (340)
T KOG4354|consen 12 SSVKPEKDIRVGLLGARGYTGKNLVRLINNH--PYLEVTHVSSR---ELAGQKLE-VYTK--L--EIQ---YADLST--- 75 (340)
T ss_pred cccccCCCceEEEEeccccchhhHHHHhcCC--CceEEEeeehh---hhcCCccc-Ccch--h--hee---ecccch---
Confidence 345667789999999 699999999987765 45887666531 00001111 1111 0 000 011111
Q ss_pred EEEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCC-CCC--eEEeec---Ccc-CCCCCC
Q 014890 140 VIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIP--TYVVGV---NAD-AYKPDE 212 (416)
Q Consensus 140 ~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd-~~p--tvV~gV---N~~-~y~~~~ 212 (416)
.|...+. ...-+|..+.+-+.-+-+.+...--.+--|-+||+-..+- -.| -.+||. |+. +++ ..
T Consensus 76 -------~D~~kle-e~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-na 146 (340)
T KOG4354|consen 76 -------VDAVKLE-EPHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-NA 146 (340)
T ss_pred -------hhHHHhh-cCCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-hh
Confidence 1111110 0124565566655544444444333344556788665421 134 667664 533 333 35
Q ss_pred CeEecCCcchh----hhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhcccccccc
Q 014890 213 PIISNASCTTN----CLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVP 288 (416)
Q Consensus 213 ~IISnaSCTTn----~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIP 288 (416)
+.|+||.|-.+ .|.|++|.++-+- + +-.+--|+|...--. +..|+ .-.++|+||
T Consensus 147 ~~iaNPGCYaTgsQl~l~Pllk~i~g~p----------------~--ifgvSGySGAGtkps-pkNd~---~~l~nnlip 204 (340)
T KOG4354|consen 147 RLIANPGCYATGSQLPLVPLLKAILGKP----------------E--IFGVSGYSGAGTKPS-PKNDY---SELANNLIP 204 (340)
T ss_pred hhccCCCcccccCcccchHHHHHhcCCc----------------c--eeeeccccCCCCCCC-CccCH---HHHhcCCcc
Confidence 68999999554 3678888775322 1 112234555522111 11232 236899999
Q ss_pred CCCChHHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccc-cCCCcccccCCCeeeeccC
Q 014890 289 TSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFR 367 (416)
Q Consensus 289 t~tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~-~lkgil~~~~~p~VS~Df~ 367 (416)
-.-.--..+..+=-.++-.+.-+---.|-+.|-...+++.+++.++.||+++.++..-++ +|--+++ |-|+| -|..
T Consensus 205 Y~ltdHiHerEIs~r~k~~VaF~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk~~YedE~lvhV~d--dvPlv-kdv~ 281 (340)
T KOG4354|consen 205 YGLTDHIHEREISQRSKVTVAFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYKTSYEDEELVHVLD--DVPLV-KDVR 281 (340)
T ss_pred ccccccchhHhHHHhhCCceeechhHHHHhhhceEEEEEeecCcccHHHHHHHHHhhccCcceeeeec--cccce-eccC
Confidence 752111112211111111111111112333444456788899999999999999986554 3433332 34555 4566
Q ss_pred CCCcceeeeCCCCcccCCceEEEEEEecCC
Q 014890 368 CSDVSSTVDSSLTLVMGDDMVKVIAWYDNE 397 (416)
Q Consensus 368 g~~~S~i~D~~~t~v~~~~~vK~~~WyDNE 397 (416)
|.-+- .+-.---. ..++-+-|++=-||-
T Consensus 282 gsh~v-~~ggF~~~-~~g~Ravii~tIDNL 309 (340)
T KOG4354|consen 282 GSHYV-HMGGFPDR-IPGDRAVIISTIDNL 309 (340)
T ss_pred Cccee-EeccccCC-CCCceEEEEEehhhh
Confidence 64332 22111111 122334466667764
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.051 Score=52.53 Aligned_cols=35 Identities=40% Similarity=0.624 Sum_probs=31.1
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
.+.+||+|-|||.||+.+++.|.+.. ..||+|.|.
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g---~~vv~v~D~ 63 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAG---AKVVAVSDS 63 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECC
Confidence 35689999999999999999998864 899999985
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.025 Score=60.08 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=63.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec----------CCChhHHhhhhcccccc-ccCCCceeeecCCeEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND----------TGGVKQASHLLKYDSTL-GIFEADVKPVGTDGIS 135 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd----------~~~~~~~a~LlkyDS~~-G~f~~~v~~~~~~~i~ 135 (416)
...||+|-|||.||+.+++.|.+.. ..||+|.| + +++ .|++|--.+ |.... ..+..
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~G---akVVavsDs~G~iyn~~GL-D~~---~L~~~k~~~~~~l~~----~~~~~-- 297 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQLG---AKVVTCSDSSGYVYDEEGI-DLE---KLKEIKEVRRGRISE----YAEEF-- 297 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCC-CHH---HHHHHHHhcCCchhh----hhhhc--
Confidence 3579999999999999999998875 89999988 3 333 334332211 22111 10000
Q ss_pred ECCEEEEEEeccCCCCCCCCCccccEEEcCC-CCCCCHhhHHHHHHcCCCEEEE
Q 014890 136 VDGKVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 136 v~G~~I~v~~~~~p~~i~W~~~gvDiVie~T-G~f~s~~~a~~hl~aGAkkVII 188 (416)
+.+. -+++.+ | ...+||.+.|+ +.-++.+.+.++.+.+|| +|+
T Consensus 298 -~~~~------i~~~~i-~-~~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 298 -GAEY------LEGGSP-W-SVPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred -CCee------cCCccc-c-ccCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 0111 122222 5 35899999996 677788999999887884 444
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.061 Score=51.70 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=30.6
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
+..||+|-|||.+|+.+++.|.+.. ..+|+|.|.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G---~~vV~vsD~ 55 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEG---GKVLAVSDP 55 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC---CEEEEEEcC
Confidence 4679999999999999999999875 789999996
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.02 Score=58.01 Aligned_cols=96 Identities=25% Similarity=0.278 Sum_probs=61.8
Q ss_pred ceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||.|+|+|++. .++.+.... +.++|+||-|. +.+.....-+| | + ++++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~-~~~~l~av~d~-~~~~~~~~~~~----~-----------------~--~~~~-- 53 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRK-DSWHVAHIFRR-HAKPEEQAPIY----S-----------------H--IHFT-- 53 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCC-CCEEEEEEEcC-ChhHHHHHHhc----C-----------------C--Cccc--
Confidence 479999999998853 466664432 34999999986 22221111111 1 0 0111
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+-||+...-.+.+...+++| |.|++--|-
T Consensus 54 ~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (344)
T PRK10206 54 SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKPF 97 (344)
T ss_pred CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecCC
Confidence 112221 12347899999999999999999999999 678886664
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0034 Score=53.49 Aligned_cols=87 Identities=28% Similarity=0.329 Sum_probs=48.4
Q ss_pred ccChhHHHHHHHHHhCCCC-CceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCCCC-C
Q 014890 75 GFGRIGRNFLRCWHGRKDS-PLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVN-L 152 (416)
Q Consensus 75 GfGrIGR~vlr~l~~~~~~-~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p~~-i 152 (416)
|||.||+.+++.+.++... +++|++|-+... ++..+. . . ...+.... .+.++ +
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~------~~~~~~-------~-~-~~~~~~~~----------~~~~~~~ 55 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSM------LISKDW-------A-A-SFPDEAFT----------TDLEELI 55 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSE------EEETTH-------H-H-HHTHSCEE----------SSHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCc------hhhhhh-------h-h-hccccccc----------CCHHHHh
Confidence 8999999999999876421 489999977520 000000 0 0 00000000 11111 1
Q ss_pred CCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcC
Q 014890 153 PWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (416)
Q Consensus 153 ~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsa 190 (416)
.| ..+|+|||||+.....+..+..+++|. =||++
T Consensus 56 ~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 56 DD--PDIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp TH--TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred cC--cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 11 168999999999888888888899987 44554
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.029 Score=58.50 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=65.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc-cccccccCCCceeeecCC---eE--EECCEEE
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGTD---GI--SVDGKVI 141 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk-yDS~~G~f~~~v~~~~~~---~i--~v~G~~I 141 (416)
.||+|.| +|.||++.|+++...++ .++|+++---.+++.+..+.+ |...| +-+.++. .+ .+.+..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~-~f~VvaLaa~~n~~~l~~q~~~f~p~~------v~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPD-RFRVVALSAGKNVELLAEQAREFRPKY------VVVADEEAAKELKEALAAAGI 74 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCcc-ccEEEEEEcCCCHHHHHHHHHHhCCCE------EEEcCHHHHHHHHHhhccCCc
Confidence 4899999 99999999999876543 599999973225554444432 22211 1100100 00 0011113
Q ss_pred EEEeccC-CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 142 QVVSNRN-PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 142 ~v~~~~~-p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
+++...+ ..++- ...++|+|+.+++.+...+..-..+++| |+|.+
T Consensus 75 ~v~~G~~~~~~l~-~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaL 120 (385)
T PRK05447 75 EVLAGEEGLCELA-ALPEADVVVAAIVGAAGLLPTLAAIRAG-KRIAL 120 (385)
T ss_pred eEEEChhHHHHHh-cCCCCCEEEEeCcCcccHHHHHHHHHCC-CcEEE
Confidence 3333221 11110 1226899999999999998888899999 55655
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.045 Score=55.03 Aligned_cols=140 Identities=15% Similarity=0.159 Sum_probs=78.9
Q ss_pred ccceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 66 QAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 66 ~m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
.+.+||.||| .||+|+.+.+++.. ++ |++|+.-|.... -++-.+.+.|..+++.
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~-~~--~~Lv~~~~~~~~----------------------~~~~~~~~~g~~v~~~ 63 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVS-AG--LQLVPVSFTGPA----------------------GVGVTVEVCGVEVRLV 63 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhc-CC--CEEEEEeccccc----------------------cccccceeccceeeee
Confidence 3568999999 79999999999988 43 999987654110 0011123445466665
Q ss_pred eccCCCCC--CCCCcccc-EEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeE--ecCC
Q 014890 145 SNRNPVNL--PWGDLGID-LVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPII--SNAS 219 (416)
Q Consensus 145 ~~~~p~~i--~W~~~gvD-iVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~II--SnaS 219 (416)
...|.+.. .-+....| ++||=|-.....+.+...++.|.+-||=|..-.++ ......-.+.-+++ .|-|
T Consensus 64 ~~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e------~l~~~~~~~~i~vv~apNfS 137 (286)
T PLN02775 64 GPSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRD------RLLKDVEESGVYAVIAPQMG 137 (286)
T ss_pred cCccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHH------HHHHHHhcCCccEEEECccc
Confidence 22222221 00111468 89997777777777778888898665544433222 11111111223444 4444
Q ss_pred cchhhhHHHHHHHHHHh
Q 014890 220 CTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 220 CTTn~Lap~lkvL~~~f 236 (416)
=-.|-|.-+++.+-+.|
T Consensus 138 iGv~ll~~l~~~aA~~l 154 (286)
T PLN02775 138 KQVVAFQAAMEIMAEQF 154 (286)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45555555555555555
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.05 Score=53.64 Aligned_cols=98 Identities=28% Similarity=0.295 Sum_probs=63.9
Q ss_pred cceeEEEEccChhHH-HHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAINGFGRIGR-NFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaINGfGrIGR-~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
+++||||.|.|.|++ ..+..+...++. +++|+|-|. +++.+..+. ..||.- +.+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~-~~~vav~d~-~~~~a~~~a---~~~~~~-------------------~~~- 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGG-LELVAVVDR-DPERAEAFA---EEFGIA-------------------KAY- 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCc-eEEEEEecC-CHHHHHHHH---HHcCCC-------------------ccc-
Confidence 579999999997764 577777765422 799999876 444333222 112110 000
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ -.+..+|+|+=||+...-.+.+.+.|++|. .|++--|-
T Consensus 57 -~~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKPl 100 (342)
T COG0673 57 -TDLEEL-LADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKPL 100 (342)
T ss_pred -CCHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCCC
Confidence 111111 012258999999999999999999999997 68886664
|
|
| >PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.17 Score=54.01 Aligned_cols=110 Identities=18% Similarity=0.257 Sum_probs=67.1
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc-cccccccCCCceeeecCC--------eEEEC
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGTD--------GISVD 137 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk-yDS~~G~f~~~v~~~~~~--------~i~v~ 137 (416)
+.||+|.| +|-||.+.|+.+...++ +|+|+++.--.+.+.++...+ |...| +- +.+. .+ .
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd-~f~vvaLaag~Ni~lL~~q~~~f~p~~------v~-v~d~~~~~~l~~~l--~ 126 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPD-KFKVVALAAGSNVTLLADQVRKFKPKL------VA-VRNESLVDELKEAL--A 126 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCcc-ccEEEEEECCCCHHHHHHHHHHhCCCE------EE-EcCHHHHHHHHHhh--c
Confidence 46999999 79999999999887653 599999977556666655332 22211 11 1110 01 1
Q ss_pred CE--EEEEEec-cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 138 GK--VIQVVSN-RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 138 G~--~I~v~~~-~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
|. .++++.. ....++- ....+|+|+.+.+.+....-.-..+++| |+|.+.
T Consensus 127 ~~~~~~~vl~G~egl~~la-~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VALA 179 (454)
T PLN02696 127 DLDDKPEIIPGEEGIVEVA-RHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIALA 179 (454)
T ss_pred CCCCCcEEEECHHHHHHHH-cCCCCCEEEEeCccccchHHHHHHHHCC-CcEEEe
Confidence 10 1233321 1111110 1126899999999998887777888999 566553
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.052 Score=53.37 Aligned_cols=165 Identities=18% Similarity=0.122 Sum_probs=88.3
Q ss_pred cceeEEEEccChhHHHHHHHHHhCC------C--CCceEEEEe-cCCChhHHhhhhccccccccCCCceeeecCCeEEEC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRK------D--SPLEVVAIN-DTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVD 137 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~------~--~~~~vVaIN-d~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~ 137 (416)
.+.||.|.|.|-+|-.+++.|.... . ..++|+.+- |..+...+-.-+-+++.-|+.+.++- ...--.++
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~--~~ri~~~~ 87 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVL--VNRLNQAM 87 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHH--HHHHHhcc
Confidence 4679999999999999999987531 0 013555554 33344444433334555677665432 11111122
Q ss_pred CEEEEEEecc-CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC--CEEEEcCCC----------------CCCCCe
Q 014890 138 GKVIQVVSNR-NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA--KKVLITAPG----------------KGDIPT 198 (416)
Q Consensus 138 G~~I~v~~~~-~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA--kkVIIsaps----------------kd~~pt 198 (416)
|..|....++ ++.++ ..+.|+||+|+..+.+|......+..+- .+..|++.. +.....
T Consensus 88 ~~~i~a~~~~~~~~~~---~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k~~~~~ 164 (244)
T TIGR03736 88 GTDWTAHPERVERSST---LHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAKGENRL 164 (244)
T ss_pred CceEEEEEeeeCchhh---hcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccccCCce
Confidence 4334433322 12222 1378999999999988876644443211 122333222 334566
Q ss_pred EEeecCcc---CCCCC-CCeEecCCcch-----------hh--hHHHHHHHHHHh
Q 014890 199 YVVGVNAD---AYKPD-EPIISNASCTT-----------NC--LAPFVKVLDQKF 236 (416)
Q Consensus 199 vV~gVN~~---~y~~~-~~IISnaSCTT-----------n~--Lap~lkvL~~~f 236 (416)
++|.+-+. .+++. +.=-+.||||. |. -......|.+.|
T Consensus 165 ~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~Q~l~iN~~~a~~~~~~L~~lf 219 (244)
T TIGR03736 165 RLPHVGELFPELIDPSVDPDDDRPSCSLAEALAKQSLFINQAIAVFAMNLLWKLF 219 (244)
T ss_pred ecCCchhhCcccccCccCCCCCCCCchHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 77766532 23331 12237899973 22 234566777777
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.11 Score=51.45 Aligned_cols=104 Identities=17% Similarity=0.154 Sum_probs=64.1
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC---------CChhHHhhhhcccccccc-CCCceeeecCCeEEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT---------GGVKQASHLLKYDSTLGI-FEADVKPVGTDGISV 136 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~---------~~~~~~a~LlkyDS~~G~-f~~~v~~~~~~~i~v 136 (416)
...||+|-|||.||+.+++.|.+.. ..||+|.|. .+++.+..|++|+..++. ...-. ..+
T Consensus 37 ~g~~vaIqGfGnVG~~~a~~L~e~G---akvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~-------~~~ 106 (254)
T cd05313 37 KGKRVAISGSGNVAQYAAEKLLELG---AKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYA-------KKY 106 (254)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHh-------hcC
Confidence 3579999999999999999998875 899999882 134555555554432221 00000 001
Q ss_pred CCEEEEEEeccCCCCCCCCCccccEEEcC-CCCCCCHhhHHHHHHcCCCEEEE
Q 014890 137 DGKVIQVVSNRNPVNLPWGDLGIDLVIEG-TGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 137 ~G~~I~v~~~~~p~~i~W~~~gvDiVie~-TG~f~s~~~a~~hl~aGAkkVII 188 (416)
.| -+.. +++++ | ...+||.+=| ++.-++.+.+++-.+.+|| +|+
T Consensus 107 ~~--a~~~---~~~~~-~-~~~~DIliPcAl~~~I~~~na~~i~~~~ak-~I~ 151 (254)
T cd05313 107 GT--AKYF---EGKKP-W-EVPCDIAFPCATQNEVDAEDAKLLVKNGCK-YVA 151 (254)
T ss_pred CC--CEEe---CCcch-h-cCCCcEEEeccccccCCHHHHHHHHHcCCE-EEE
Confidence 11 0111 23332 4 3578988876 5777888888877666774 444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.042 Score=50.52 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=29.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG 105 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~ 105 (416)
..+|||.|||+|||.+++.+.... ++|++.+....
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~~~~ 70 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFG---MRVIGYDRSPK 70 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT----EEEEEESSCH
T ss_pred CCEEEEEEEcCCcCeEeeeeecCC---ceeEEecccCC
Confidence 468999999999999999998875 89999987533
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PLN02700 homoserine dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.081 Score=55.12 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=49.3
Q ss_pred ccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHHHHHHHHHHhhh
Q 014890 159 IDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVT 238 (416)
Q Consensus 159 vDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~~ 238 (416)
-+++||||+.....+..+..+++|. -|||+. |. |.-...=-...+.. ++.-=--.+|.-+=.|++..|.+.+
T Consensus 110 ~~ViVD~T~s~~~~~~y~~aL~~G~--hVVTaN-K~--~~a~~~~~~~~la~-~~~~~~yEatVgaGlPiI~tl~~ll-- 181 (377)
T PLN02700 110 GLVVVDCSASMETIGALNEAVDLGC--CIVLAN-KK--PLTSTLEDYDKLAA-HPRRIRHESTVGAGLPVIASLNRIL-- 181 (377)
T ss_pred CCEEEECCCChHHHHHHHHHHHCCC--eEEcCC-ch--HhccCHHHHHHHHH-cCCeEEEEeeeeeccchHHHHHHHh--
Confidence 4899999998666677788899998 567654 32 11111000011110 1111112456666799999998876
Q ss_pred hccccccccccceeEEE
Q 014890 239 QLNDRIFPMCAGIIKGT 255 (416)
Q Consensus 239 ~~~~~~~~~~~GI~~~~ 255 (416)
...++| ..+.||-.|+
T Consensus 182 ~sGd~I-~~I~GIlnGT 197 (377)
T PLN02700 182 SSGDPV-HRIVGSLSGT 197 (377)
T ss_pred hccCCE-EEEEEEEeCh
Confidence 112343 4445666664
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.32 Score=51.31 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=29.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..||+|-|||.||+.+++.|.+.. ..||||.|.
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~G---akVVaVsD~ 238 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKG---GKIVAVSDI 238 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CEEEEEECC
Confidence 579999999999999999998875 899999985
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.086 Score=50.70 Aligned_cols=99 Identities=24% Similarity=0.257 Sum_probs=60.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc--cccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK--YDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk--yDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++.|+|.|++|+.+++.|.+++ .+|++|-+ +.+.+...++ +|. ..+..++....++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g---~~Vv~Id~--d~~~~~~~~~~~~~~--------------~~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG---HNVVLIDR--DEERVEEFLADELDT--------------HVVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC---CceEEEEc--CHHHHHHHhhhhcce--------------EEEEecCCCHHHHHh
Confidence 58999999999999999999885 57888875 2333222221 221 112222222222221
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCH-hhHHHHHH-cCCCEEEEcCCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDR-EGAGKHIQ-AGAKKVLITAPGK 193 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~-~~a~~hl~-aGAkkVIIsapsk 193 (416)
. +-..+|+|+-+||.-... --+..+++ .|+++||.-+.+.
T Consensus 62 -----a--gi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 62 -----A--GIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred -----c--CCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 1 123679999999984433 34445545 6899988776653
|
|
| >COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.18 Score=49.01 Aligned_cols=135 Identities=27% Similarity=0.337 Sum_probs=81.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCce---EEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLE---VVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~---vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
+.||+|.|.|.||.-++--++... ..+| .|+|.- ...+...+.| --.++|- + +.| +
T Consensus 4 k~kvaiigsgni~tdlm~k~lr~g-~~le~~~mvgidp~sdglaraarl-gv~tt~e-----------g---v~~----l 63 (310)
T COG4569 4 KRKVAIIGSGNIGTDLMIKILRHG-QHLEMAVMVGIDPQSDGLARAARL-GVATTHE-----------G---VIG----L 63 (310)
T ss_pred cceEEEEccCcccHHHHHHHHhcC-CcccceeEEccCCCccHHHHHHhc-CCcchhh-----------H---HHH----H
Confidence 579999999999987765555442 2243 344432 2123333322 1122220 0 001 1
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccC-CCC-CCCeEecCCcc
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA-YKP-DEPIISNASCT 221 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~-y~~-~~~IISnaSCT 221 (416)
+ +-|+ +.++|+|||+|..+..++.|++..++|.+- |+-....--|-+|+-+|-+. .+. .-+.| .|-
T Consensus 64 l--~~p~-----~~di~lvfdatsa~~h~~~a~~~ae~gi~~--idltpaaigp~vvp~~n~~eh~~a~nvnmv---tcg 131 (310)
T COG4569 64 L--NMPE-----FADIDLVFDATSAGAHVKNAAALAEAGIRL--IDLTPAAIGPYVVPVVNLEEHVDALNVNMV---TCG 131 (310)
T ss_pred H--hCCC-----CCCcceEEeccccchhhcchHhHHhcCCce--eecchhccCCeeccccchHHhcCCCCcceE---eec
Confidence 1 1232 247899999999999999999999999954 54433223689999999875 332 23455 466
Q ss_pred hhhhHHHHHHHHH
Q 014890 222 TNCLAPFVKVLDQ 234 (416)
Q Consensus 222 Tn~Lap~lkvL~~ 234 (416)
..+-.|++....+
T Consensus 132 gqatipiv~avsr 144 (310)
T COG4569 132 GQATIPIVAAVSR 144 (310)
T ss_pred Ccccchhhhhhhh
Confidence 6666677666544
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.12 Score=51.87 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=57.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||.||| .|++||.+.+++.. + +|++|+.. + |..+ ..++...+.|..|++....
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~--~~~Lv~~~-~------------~~~~---------~~~~~~~~~g~~v~v~~~~ 55 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-A--GLEIVPTS-F------------GGEE---------EAENEAEVAGKEILLHGPS 55 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-C--CCEEEeeE-c------------cccc---------cccchhhhcccceeeeccc
Confidence 5899999 89999999999877 3 39998752 1 2110 1112222444455663211
Q ss_pred ----CCCCCCCCCcccc-EEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 148 ----NPVNLPWGDLGID-LVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 148 ----~p~~i~W~~~gvD-iVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
+++.+- +...| ++||=|-.....+.+...++.|..-|+=|
T Consensus 56 ~~~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~~ViGT 100 (275)
T TIGR02130 56 EREARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIPFVMGT 100 (275)
T ss_pred cccccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCCEEEcC
Confidence 122221 11267 99998777777778888888888554433
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.14 Score=53.23 Aligned_cols=92 Identities=29% Similarity=0.392 Sum_probs=52.8
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeec-----CCeEEECCEEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVG-----TDGISVDGKVI 141 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~-----~~~i~v~G~~I 141 (416)
.++|||..|.|..|+-++-.....+ .|++|||.|. .++..- ..||..++.-..-++ .. .+.|. .| +|
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m~--Gm~vvaisd~-~~~~ak--~A~~~ag~~~~~~~e-~~~~s~~a~Ai~-aG-Ki 87 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASMP--GMEVVAISDR-NLDAAK--RAYDRAGGPKIEAVE-ADDASKMADAIE-AG-KI 87 (438)
T ss_pred CceEEEEecccccchHHHHHHhhcC--CceEEEEecc-cchHHH--HHHHHhcCCcccccc-cchhhHHHHHHh-cC-cE
Confidence 5699999999999999988877554 4999999995 222221 124655544221111 10 00011 12 12
Q ss_pred EEEeccCCCCCCCCCccccEEEcCCCCC
Q 014890 142 QVVSNRNPVNLPWGDLGIDLVIEGTGVF 169 (416)
Q Consensus 142 ~v~~~~~p~~i~W~~~gvDiVie~TG~f 169 (416)
.+.. |.+ +-.....+|++||+||.-
T Consensus 88 ~vT~--D~~-~i~~~~~IdvIIdATG~p 112 (438)
T COG4091 88 AVTD--DAE-LIIANDLIDVIIDATGVP 112 (438)
T ss_pred EEec--chh-hhhcCCcceEEEEcCCCc
Confidence 3321 111 112334799999999974
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.15 Score=48.35 Aligned_cols=97 Identities=23% Similarity=0.258 Sum_probs=61.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+.||+|.|.|.+|+.+++.+... ...++++++=|. +++.. | .. ++|.++ ....
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~-~~g~~ivgv~D~-d~~~~----------~-----------~~--i~g~~v--~~~~ 136 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFE-KRGFKIVAAFDV-DPEKI----------G-----------TK--IGGIPV--YHID 136 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcc-cCCcEEEEEEEC-Chhhc----------C-----------CE--eCCeEE--cCHH
Confidence 46999999999999999864322 235899988664 22111 1 00 223222 2212
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
+..++ ..+.++|+|+-|++.....+-+..-+++|.+.|+.-.|-
T Consensus 137 ~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~ 180 (213)
T PRK05472 137 ELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPV 180 (213)
T ss_pred HHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCce
Confidence 22222 134579999999998777776777888998877665554
|
|
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.32 Score=51.93 Aligned_cols=101 Identities=17% Similarity=0.247 Sum_probs=65.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCC---------ChhHHhhhhcccccc-ccCCCceeeecCCeEEEC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG---------GVKQASHLLKYDSTL-GIFEADVKPVGTDGISVD 137 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~---------~~~~~a~LlkyDS~~-G~f~~~v~~~~~~~i~v~ 137 (416)
..||+|-|||.+|+..++.|.+.. ..||+|.|.. +++.+.+|++|-..+ |+... ..+. ..
T Consensus 237 Gk~VaVqG~GnVg~~aa~~L~e~G---akVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~----~~~~---~~ 306 (454)
T PTZ00079 237 GKTVVVSGSGNVAQYAVEKLLQLG---AKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKE----YAKH---SS 306 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHh----hhhc---cC
Confidence 469999999999999999999875 7999999963 255555555432211 22111 0000 00
Q ss_pred CEEEEEEeccCCCCCCCCCccccEEEcC-CCCCCCHhhHHHHHHcCCCE
Q 014890 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEG-TGVFVDREGAGKHIQAGAKK 185 (416)
Q Consensus 138 G~~I~v~~~~~p~~i~W~~~gvDiVie~-TG~f~s~~~a~~hl~aGAkk 185 (416)
| .+... +++ +|. ..+||.+=| ++..++.+.|..-++.|||-
T Consensus 307 ~--a~~~~---~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~ 348 (454)
T PTZ00079 307 T--AKYVP---GKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKL 348 (454)
T ss_pred C--cEEeC---CcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCeE
Confidence 1 01111 222 375 589998877 68888999998888889954
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.23 Score=50.39 Aligned_cols=40 Identities=28% Similarity=0.155 Sum_probs=31.7
Q ss_pred ccccccccceeEEEE----c-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 60 YRKVAAQAKLKVAIN----G-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 60 ~~~~~~~m~ikVaIN----G-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.......|+.||.|. | +|.||+.+++.|.+++ .+|+++..
T Consensus 44 ~~~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G---~~V~~l~R 88 (378)
T PLN00016 44 AAAAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAG---HEVTLFTR 88 (378)
T ss_pred hhhhcccccceEEEEeccCCCceeEhHHHHHHHHHCC---CEEEEEec
Confidence 344455567899999 8 9999999999999875 68877764
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.41 Score=47.28 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=26.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g---~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG---YQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEEc
Confidence 4899999 8999999999999875 68888864
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.12 Score=52.06 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=27.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+|||.+++.+...+ ++|.+.+.
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fg---m~V~~~d~ 176 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFG---AKVVYYST 176 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcC---CEEEEECC
Confidence 568999999999999999987764 88877764
|
|
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.069 Score=60.59 Aligned_cols=165 Identities=18% Similarity=0.225 Sum_probs=80.3
Q ss_pred cceeEEEEccChhHHHHHHHHHhCC------CCCceEEEEecCCChhHHhhhhccccccccCCCceee-ecCCeEEECC-
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP-VGTDGISVDG- 138 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~------~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~-~~~~~i~v~G- 138 (416)
++++|+|.|||.||+.+++.+.++. .-+++|++|-+... .++ |. .|--....+. ..+..-..+-
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~-----~~~--~~-~g~~~~~~~~~~~~~~~~~~~~ 535 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRK-----MLL--DE-HGIDLDNWREELAEAGEPFDLD 535 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCc-----ccc--CC-CCCCHHHHHHHHhhccCCCCHH
Confidence 6799999999999999999987542 12478888865310 111 10 0100000000 0000000000
Q ss_pred EEEEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCC---CCCCeE
Q 014890 139 KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYK---PDEPII 215 (416)
Q Consensus 139 ~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~---~~~~II 215 (416)
..+.+... .....|+|||||+...........+++|. -|||+. |. |+--+--.+..+. ..++.-
T Consensus 536 ~~~~~~~~--------~~~~~~vvvd~t~~~~~~~~~~~al~~g~--~VVtaN-K~--~~a~~~~~~~el~~~a~~~~~~ 602 (819)
T PRK09436 536 RLIRLVKE--------YHLLNPVIVDCTSSQAVADQYADFLAAGF--HVVTPN-KK--ANTSSYAYYHQLREAARKSRRK 602 (819)
T ss_pred HHHHHHhh--------cCCCCCEEEECCCChHHHHHHHHHHHcCC--EEEcCC-ch--hccCCHHHHHHHHHHHHHcCCe
Confidence 00000000 01245899999997554555567888887 677765 42 1110000111111 011111
Q ss_pred ecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEE
Q 014890 216 SNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGT 255 (416)
Q Consensus 216 SnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~ 255 (416)
=--.+|.-+=.|+++.|.+.+ +..++| ..+.||-.|+
T Consensus 603 ~~yeatV~~giPii~~l~~~~--~~g~~i-~~i~GilnGT 639 (819)
T PRK09436 603 FLYETNVGAGLPVIETLQNLL--NAGDEL-LKFEGILSGS 639 (819)
T ss_pred EEEeeeeccccchHHHHHHHH--hccCcE-EEEEEEEeCh
Confidence 111455666689999997765 223443 4445666664
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.49 Score=44.67 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=26.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
.++|+|.|||++|+.+++.|.+.. .+|+ +.|.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G---~~Vv-v~D~ 59 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEG---AKLI-VADI 59 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEE-EEcC
Confidence 358999999999999999998875 6888 4444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.12 Score=48.48 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=55.7
Q ss_pred EEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCC
Q 014890 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (416)
Q Consensus 71 VaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p 149 (416)
|+|.| +|.+|+.+++.|.... ++|.++-... .+..+.-|+.. | ++ + +. ....++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~---~~V~~l~R~~-~~~~~~~l~~~---g-----~~------v------v~-~d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG---FSVRALVRDP-SSDRAQQLQAL---G-----AE------V------VE-ADYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---GCEEEEESSS-HHHHHHHHHHT---T-----TE------E------EE-S-TT-H
T ss_pred CEEECCccHHHHHHHHHHHhCC---CCcEEEEecc-chhhhhhhhcc---c-----ce------E------ee-cccCCH
Confidence 68999 8999999999999853 8888876532 22222222211 1 11 1 00 011233
Q ss_pred CCCCCCCccccEEEcCCCCCCCH------hhHHHHHHcCCCEEEEcCC
Q 014890 150 VNLPWGDLGIDLVIEGTGVFVDR------EGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 150 ~~i~W~~~gvDiVie~TG~f~s~------~~a~~hl~aGAkkVIIsap 191 (416)
+.|.=...|+|.||-+++..... ..+....++|+|++|.|..
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence 33322335999999999976332 2334555789999887544
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.15 Score=51.54 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=27.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+|||.+++.+...+ ++|++.+.
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fg---m~V~~~~~ 179 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFG---MRVLIGQL 179 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCC---CEEEEECC
Confidence 468999999999999999987764 88877764
|
|
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.085 Score=59.87 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=29.7
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCC-------CCCceEEEEec
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAIND 102 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~-------~~~~~vVaINd 102 (416)
.+.++|+|.|||.||+.+++.+.++. .-++.|++|-+
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~ 499 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD 499 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 35799999999999999999987642 12588899865
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.89 Score=45.38 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=27.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|++||+|.|.|.||..+...|.... .+|..++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G---~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAG---ADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcC---CcEEEEec
Confidence 5679999999999999999998764 46666653
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.4 Score=45.45 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=26.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCce-EEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaINd~ 103 (416)
.+||+|.|.|++|+.+++.+......+++ +++.++.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~ 40 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS 40 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence 47999999999999999998765322344 6666653
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.31 Score=46.77 Aligned_cols=102 Identities=22% Similarity=0.301 Sum_probs=68.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+.+|.|+|.|.+||.+|.--+... .+|.++++=|. +++. -|++-+ | +.|....
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~-~~~~iv~~FDv-~~~~----------VG~~~~-------------~--v~V~~~d 136 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKK-NGMKIVAAFDV-DPDK----------VGTKIG-------------D--VPVYDLD 136 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhh-cCceEEEEecC-CHHH----------hCcccC-------------C--eeeechH
Confidence 369999999999999977555432 35999998876 3321 233222 2 3333333
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP 197 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~p 197 (416)
+.+++ -++.++|++|=|.+.....+-|..-.++|+|.++=-+|..=..|
T Consensus 137 ~le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv~l~~p 185 (211)
T COG2344 137 DLEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPVRLQVP 185 (211)
T ss_pred HHHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccceEecCC
Confidence 33322 13458999999999998888899999999998665566532344
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.18 Score=50.91 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=26.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
..+|||.|||+|||.+++.+...+ ++|++.+
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg---~~V~~~~ 177 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALG---MKVLYAE 177 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCC---CEEEEEC
Confidence 469999999999999999987664 7887765
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.62 Score=44.77 Aligned_cols=31 Identities=39% Similarity=0.457 Sum_probs=28.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||||.| .|++|..++.-+..|. -||+||-.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG---HeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG---HEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC---CeeEEEEe
Confidence 5999999 8999999999999996 79999964
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.68 Score=40.09 Aligned_cols=83 Identities=22% Similarity=0.221 Sum_probs=54.7
Q ss_pred eEEEEc----cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 70 KVAING----FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 70 kVaING----fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
+|||.| -++.|+.+++.+.++. ++|..||-- ++. +.|.+ .+
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G---~~v~~Vnp~-----------~~~------------------i~G~~--~y- 46 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAG---YEVYPVNPK-----------GGE------------------ILGIK--CY- 46 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT----EEEEESTT-----------CSE------------------ETTEE---B-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCC---CEEEEECCC-----------ceE------------------ECcEE--ee-
Confidence 689999 5999999999999854 799999842 222 23322 11
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
.+..++| ..+|+++-++..-...+..+.-.+.|+|.|++...
T Consensus 47 -~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 47 -PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp -SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred -ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 1122121 37899999999888888888888889999998655
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.21 Score=49.83 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=26.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
-+|+|.|+|+||+.+++.+.... .+|...|.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G---~~V~v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG---ARVFVGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC---CEEEEEeC
Confidence 58999999999999999998775 67777775
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.28 Score=49.10 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=26.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..||+|.|+|++|+.+++.|.... .+|.+++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G---a~V~v~~r 183 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG---ANVTVGAR 183 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEEC
Confidence 469999999999999999998764 57766764
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.29 Score=49.96 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=27.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..++||.|+||||+.++|.+...+ ++|..-+-.
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fg---m~v~y~~~~ 178 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFG---MKVLYYDRS 178 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCC---CEEEEECCC
Confidence 468999999999999999998654 787666644
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.48 Score=38.43 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=31.5
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhh
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL 113 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Ll 113 (416)
||||.|+|.+|..+++.|.+.+..+-+|..+++. +++.+.++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-SPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-SHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-cHHHHHHHH
Confidence 7999999999999999998874223576656443 566666654
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.43 Score=50.51 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=25.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.-+|+|.|+|.||+.+++.+.... .+|+.++
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~G---a~ViV~d 242 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLG---ARVIVTE 242 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 358999999999999999988775 5766554
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.25 Score=50.67 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=28.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|||.|||+|||.+++.+...+ ++|++.+..
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG---~~V~~~dr~ 191 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFG---VKLLATRRS 191 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCC---CEEEEECCC
Confidence 468999999999999999998765 899888753
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.87 Score=48.58 Aligned_cols=103 Identities=15% Similarity=0.222 Sum_probs=62.9
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec----------CCChhHHhhhhccccc-cccCCCceeeecCCeEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND----------TGGVKQASHLLKYDST-LGIFEADVKPVGTDGIS 135 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd----------~~~~~~~a~LlkyDS~-~G~f~~~v~~~~~~~i~ 135 (416)
...||+|-|||.+|...++.|++.. -.||+|.| + +++.+.|+.+|... +|+ +....+.
T Consensus 227 ~g~rVaVQGfGNVG~~aA~~L~e~G---AkVVaVSD~~G~iy~~~Gl-d~~~l~~~~~~k~~~~~~----v~~~~~~--- 295 (444)
T PRK14031 227 KGKVCLVSGSGNVAQYTAEKVLELG---GKVVTMSDSDGYIYDPDGI-DREKLDYIMELKNLYRGR----IREYAEK--- 295 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCCeEECCCCC-CHHHHHHHHHHHhhcCCc----hhhhHhh---
Confidence 3469999999999999999999875 79999999 3 45555444433221 111 1100000
Q ss_pred ECCEEEEEEeccCCCCCCCCCccccEEEcC-CCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 136 VDGKVIQVVSNRNPVNLPWGDLGIDLVIEG-TGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 136 v~G~~I~v~~~~~p~~i~W~~~gvDiVie~-TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
. | .+... +++ +|. ..+|+.+=| ++.-++.+.|++-...|++ +|+.
T Consensus 296 ~-g--a~~i~---~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~~-~V~E 341 (444)
T PRK14031 296 Y-G--CKYVE---GAR-PWG-EKGDIALPSATQNELNGDDARQLVANGVI-AVSE 341 (444)
T ss_pred c-C--CEEcC---Ccc-ccc-CCCcEEeecccccccCHHHHHHHHhcCCe-EEEC
Confidence 0 1 11111 222 353 578988877 5667888888887666773 3443
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.13 Score=45.93 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=26.0
Q ss_pred EEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 71 VaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R 30 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVR 30 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEES
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEec
Confidence 68999 8999999999999986 79988875
|
... |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.28 Score=49.99 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=27.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+||+.+++.+.... |+|++.+-
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afg---m~v~~~d~ 173 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFG---MKVIGYDP 173 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEECC
Confidence 468999999999999999888775 89888775
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.28 Score=51.19 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=27.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+|||.++|.+.... ++|.+.+.
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~fG---~~V~~~dr 223 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPFD---VKLHYTDR 223 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 468999999999999999998764 88877764
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.29 Score=49.71 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=25.4
Q ss_pred ceeEEEEccChhHHHHHHHHH-hCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~-~~~~~~~~vVaIN 101 (416)
..+|||.|||+|||.+++.+. ..+ ++|++.+
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~fg---m~V~~~~ 176 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGFN---MPILYNA 176 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcCC---CEEEEEC
Confidence 468999999999999999886 554 7876554
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.3 Score=51.15 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=27.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+|||.+++.+...+ ++|++.+.
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fG---m~V~~~d~ 182 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLG---MRVYFYDI 182 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999998765 89887763
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.31 Score=49.12 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=27.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+||+.+++.+...+ ++|++.|.
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG---~~V~~~~r 153 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFG---MNIYAYTR 153 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999876654 89888875
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=90.59 E-value=2.2 Score=42.52 Aligned_cols=139 Identities=22% Similarity=0.185 Sum_probs=70.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC-CChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~-~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|.|.|.||...+..+.... ..|+++... .+.+.+..+.+ +|- + . ++-..-.+..
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G---~~vi~~~~~~~~~~~~~~~~~----~Ga---~-------~--v~~~~~~~~~-- 232 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRG---FEVYVLNRRDPPDPKADIVEE----LGA---T-------Y--VNSSKTPVAE-- 232 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEecCCCCHHHHHHHHH----cCC---E-------E--ecCCccchhh--
Confidence 37999999999999988777664 577777531 12333322221 111 0 0 1100000000
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCe-EE-eecCccCCCCCCCeEecCCcchhhh
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPT-YV-VGVNADAYKPDEPIISNASCTTNCL 225 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~pt-vV-~gVN~~~y~~~~~IISnaSCTTn~L 225 (416)
.. .+ .++|+||||+|.-...+.+-..++.|.+=|++..+..+ .+. +- ..++...+.+...|+.+-.|+..-+
T Consensus 233 --~~-~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~-~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~ 306 (355)
T cd08230 233 --VK-LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGG-REFEVDGGELNRDLVLGNKALVGSVNANKRHF 306 (355)
T ss_pred --hh-hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCC-CccccChhhhhhhHhhcCcEEEEecCCchhhH
Confidence 00 11 37899999999654445566777777644444333321 111 11 1112222323445666555655556
Q ss_pred HHHHHHHHH
Q 014890 226 APFVKVLDQ 234 (416)
Q Consensus 226 ap~lkvL~~ 234 (416)
..+++.|.+
T Consensus 307 ~~~~~~l~~ 315 (355)
T cd08230 307 EQAVEDLAQ 315 (355)
T ss_pred HHHHHHHHh
Confidence 666666643
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.33 Score=49.40 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=27.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+||+.+++.+...+ ++|.+.+.
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G---~~V~~~d~ 181 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFG---MRILYYSR 181 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999998764 78877764
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.77 Score=49.36 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=26.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.-+|+|.|||.||+.+++.+.... .+|++++.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~G---a~VIV~e~ 285 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAG---ARVIVTEI 285 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 358999999999999999998775 68777653
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.47 Score=42.85 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=24.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
+|||+.|+|++|+.+++.|.... ++|.+.|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g---~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG---YEVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT---TEEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcC---CeEEeec
Confidence 69999999999999999998775 7887776
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=89.98 E-value=1.1 Score=46.48 Aligned_cols=101 Identities=27% Similarity=0.326 Sum_probs=66.4
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
.+.+|+||.|.|+|+|-+++++..-++++.+||||-+. +.+...-. ...|+-- +.++ +++
T Consensus 4 s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~-s~~~A~~f---Aq~~~~~--~~k~-------y~s------- 63 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP-SLERAKEF---AQRHNIP--NPKA-------YGS------- 63 (351)
T ss_pred CceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc-cHHHHHHH---HHhcCCC--CCcc-------ccC-------
Confidence 35699999999999999999998776567999999986 44333222 2222210 1110 111
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
-++| -++..||+|.-++..-...|++-..++.|- .|++--|
T Consensus 64 ---yEeL-akd~~vDvVyi~~~~~qH~evv~l~l~~~K-~VL~EKP 104 (351)
T KOG2741|consen 64 ---YEEL-AKDPEVDVVYISTPNPQHYEVVMLALNKGK-HVLCEKP 104 (351)
T ss_pred ---HHHH-hcCCCcCEEEeCCCCccHHHHHHHHHHcCC-cEEeccc
Confidence 0111 023378999999998888888888887763 4777555
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.97 E-value=1.6 Score=44.22 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
..||+|.|.|.||..++..+...+
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~ 28 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKN 28 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC
Confidence 469999999999999988777654
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.27 Score=43.74 Aligned_cols=32 Identities=34% Similarity=0.548 Sum_probs=26.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+||+|.|.||+|+.+.++|.+.. .+|++|-.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag---~~v~~v~s 41 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAG---HEVVGVYS 41 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTT---SEEEEESS
T ss_pred ccEEEEECCCHHHHHHHHHHHHCC---CeEEEEEe
Confidence 579999999999999999998765 78888854
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.63 Score=49.12 Aligned_cols=30 Identities=17% Similarity=0.452 Sum_probs=24.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
.-+|+|.|+|.||+.+++.+.... .+|+++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~G---a~ViV~ 231 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQG---ARVIVT 231 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEE
Confidence 358999999999999999888765 566554
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.79 E-value=1.5 Score=46.82 Aligned_cols=103 Identities=20% Similarity=0.226 Sum_probs=65.8
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC---------CChhHHhhhhccccccccCCCceeeecCCeEEEC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT---------GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVD 137 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~---------~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~ 137 (416)
...||+|-|||.+|...++.|.+.. ..||+|.|. .+++.+.+|++|-..+|..-.. ... .+.
T Consensus 227 ~g~~vaIQGfGnVG~~aA~~L~e~G---akvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~---~~~---~~~ 297 (445)
T PRK14030 227 KGKTVAISGFGNVAWGAATKATELG---AKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAP---YAE---KFP 297 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHH---HHh---cCC
Confidence 3579999999999999999998875 799997662 1345566677654433321000 000 111
Q ss_pred CEEEEEEeccCCCCCCCCCccccEEEcC-CCCCCCHhhHHHHHHcCCCE
Q 014890 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEG-TGVFVDREGAGKHIQAGAKK 185 (416)
Q Consensus 138 G~~I~v~~~~~p~~i~W~~~gvDiVie~-TG~f~s~~~a~~hl~aGAkk 185 (416)
|- +.. ++++ .|. ..+||.+=| ++.-++.+.|++-.+.+||-
T Consensus 298 ga--~~i---~~~~-~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~ 339 (445)
T PRK14030 298 GS--TFF---AGKK-PWE-QKVDIALPCATQNELNGEDADKLIKNGVLC 339 (445)
T ss_pred CC--EEc---CCcc-cee-ccccEEeeccccccCCHHHHHHHHHcCCeE
Confidence 21 111 1222 253 588988876 68889999999888888853
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=89.61 E-value=0.44 Score=48.15 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=27.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||.||+.+++.+...+ ++|.+.+.
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG---~~V~~~~~ 167 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWG---FPLRCWSR 167 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 358999999999999999998764 88877764
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.55 E-value=1.2 Score=46.64 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaINd 102 (416)
.+|+|.|.|.||+.+++.|...+ . +|+.+|.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G---~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG---VRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC---CCeEEEEeC
Confidence 58999999999999999998764 4 5666665
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.41 E-value=1.2 Score=46.12 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=25.9
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
...||+|.| +|.+|+.+.++|...+ .+|.+++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G---~~V~~~d 129 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSG---YQVRILE 129 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCC---CeEEEeC
Confidence 447999999 9999999999998764 5665554
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=89.29 E-value=3.4 Score=40.66 Aligned_cols=125 Identities=15% Similarity=0.145 Sum_probs=64.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-+|.|+|.|.||...+..+.... ..+|.+-|. ..+.+....++ + .++- .+
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G---~~~v~~~~~-~~~rl~~a~~~----~--------------~i~~--------~~ 195 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAG---GSPPAVWET-NPRRRDGATGY----E--------------VLDP--------EK 195 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcC---CceEEEeCC-CHHHHHhhhhc----c--------------ccCh--------hh
Confidence 37999999999999988776654 443333233 22222111110 0 0110 00
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCcc-CCCCCCCeEecCCcchhhhHH
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAD-AYKPDEPIISNASCTTNCLAP 227 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~-~y~~~~~IISnaSCTTn~Lap 227 (416)
. ...++|+||||+|.-...+.+-..++.|.+=|++..+. + ++ .+|.. .+.+...++....++..-+..
T Consensus 196 ~-----~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~-~--~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~ 264 (308)
T TIGR01202 196 D-----PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYT-E--PV---NFDFVPAFMKEARLRIAAEWQPGDLHA 264 (308)
T ss_pred c-----cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecC-C--Cc---ccccchhhhcceEEEEecccchhHHHH
Confidence 0 12378999999998655566667777776444443332 1 10 12222 222233556554444444555
Q ss_pred HHHHHHH
Q 014890 228 FVKVLDQ 234 (416)
Q Consensus 228 ~lkvL~~ 234 (416)
+++.+.+
T Consensus 265 ~~~l~~~ 271 (308)
T TIGR01202 265 VRELIES 271 (308)
T ss_pred HHHHHHc
Confidence 6666643
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.47 Score=49.54 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=26.0
Q ss_pred ceeEEEEccChhHHHHHHHHH-hCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~-~~~~~~~~vVaINd 102 (416)
..+|||.|||+|||.+++.+. ..+ ++|.+.+-
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fG---m~V~~~d~ 197 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDL 197 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC---CEEEEECC
Confidence 468999999999999999874 543 78877764
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.54 Score=45.36 Aligned_cols=35 Identities=9% Similarity=0.136 Sum_probs=25.7
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|++||+|.|+|.||..+++.|........+|..++
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~ 35 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSD 35 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEc
Confidence 56799999999999999999886531113444444
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=89.05 E-value=0.57 Score=41.09 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=52.2
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhcc-ccccccCCCceeeecCCeEEEC-CEEEEEEec
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKY-DSTLGIFEADVKPVGTDGISVD-GKVIQVVSN 146 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~Llky-DS~~G~f~~~v~~~~~~~i~v~-G~~I~v~~~ 146 (416)
||.|.|.|.+|..+++.|....-+ ++..+.+ ..+++.+..-+-| .+.-|+.+.+.- .+.--.++ +-++.....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~--~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~--~~~l~~~~p~v~i~~~~~ 76 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVG--KITLIDFDTVELSNLNRQFLARQADIGKPKAEVA--ARRLNELNPGVNVTAVPE 76 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC--EEEEEcCCCcCcchhhccccCChhHCCChHHHHH--HHHHHHHCCCcEEEEEee
Confidence 689999999999999999876422 3434533 4455555544434 233454332210 11100111 112222221
Q ss_pred c-CCCCCCCCCccccEEEcCCCCCCCHhhH
Q 014890 147 R-NPVNLPWGDLGIDLVIEGTGVFVDREGA 175 (416)
Q Consensus 147 ~-~p~~i~W~~~gvDiVie~TG~f~s~~~a 175 (416)
. ++.+......+.|+||+|+..+..+...
T Consensus 77 ~~~~~~~~~~~~~~diVi~~~d~~~~~~~l 106 (143)
T cd01483 77 GISEDNLDDFLDGVDLVIDAIDNIAVRRAL 106 (143)
T ss_pred ecChhhHHHHhcCCCEEEECCCCHHHHHHH
Confidence 1 1111111124789999999986655433
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.53 Score=47.95 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=27.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.++|||.|+|+||+.+++.+.... ++|++.+.
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G---~~V~~~d~ 177 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFG---ATITAYDA 177 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEEeC
Confidence 458999999999999999998764 78877764
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=88.83 E-value=0.5 Score=49.27 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=26.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
..+|||+|+|.||+.+++.+...+ ++|.+.+
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G---~~V~~~d 146 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALG---IKTLLCD 146 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEEC
Confidence 468999999999999999998765 8887665
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=88.76 E-value=1.6 Score=44.89 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=57.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||.|. ++|+..++++.+.+ +++++|||-|. +.+....+-+ .||. ..+ .
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~-~~~eLvaV~d~-~~erA~~~A~---~~gi--------------------~~y--~ 54 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAP-ERFELAGILAQ-GSERSRALAH---RLGV--------------------PLY--C 54 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCC-CCcEEEEEEcC-CHHHHHHHHH---HhCC--------------------Ccc--C
Confidence 579999999 68999999887753 14999999986 4443332221 1221 000 1
Q ss_pred CCCCCCCCCccccEEEc--CCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 148 NPVNLPWGDLGIDLVIE--GTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie--~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
+.+++. .+-++|+|.= ++......+.+...+++| |.|++--|
T Consensus 55 ~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aG-kHVL~EKP 98 (343)
T TIGR01761 55 EVEELP-DDIDIACVVVRSAIVGGQGSALARALLARG-IHVLQEHP 98 (343)
T ss_pred CHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCC-CeEEEcCC
Confidence 222222 2224555554 334567789999999999 47877444
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.49 Score=49.44 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=26.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+...+ ++|.+.+.
T Consensus 199 gktVGIVG~G~IG~~vA~~L~afG---~~V~~~d~ 230 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPFN---CNLLYHDR 230 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999998764 78877653
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.56 E-value=0.99 Score=44.82 Aligned_cols=147 Identities=14% Similarity=0.165 Sum_probs=78.9
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhcc-----c--cccccCCCceeeecCCeEEECCEEEE
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKY-----D--STLGIFEADVKPVGTDGISVDGKVIQ 142 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llky-----D--S~~G~f~~~v~~~~~~~i~v~G~~I~ 142 (416)
||||.|.|.+|+.++..+.... ++|+..+- +++.+....++ | -..|.....- .+..+ ..|+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~---~~~~~----~~l~ 74 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAG---VDVLVFET--TEELATAGRNRIEKSLERAVSRGKLTERE---RDAAL----ARLR 74 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCC---CEEEEEEC--CHHHHHHHHHHHHHHHHHHHhcccCChhh---HHHHH----hCeE
Confidence 8999999999999998877654 78766653 23333221100 0 0112221100 00000 1233
Q ss_pred EEeccCCCCCCCCCccccEEEcCCCCCCCHhhH-----HHHH-HcCCCEEEEcCCCC-C--------CCCeEEee---cC
Q 014890 143 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGA-----GKHI-QAGAKKVLITAPGK-G--------DIPTYVVG---VN 204 (416)
Q Consensus 143 v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a-----~~hl-~aGAkkVIIsapsk-d--------~~ptvV~g---VN 204 (416)
+. .+.+.+ .++|+||||...-...+.. +++. ..|+ +|.|+.+. + ..|--+.| .|
T Consensus 75 ~~--~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf~~ 146 (286)
T PRK07819 75 FT--TDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHFFN 146 (286)
T ss_pred ee--CCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEecCC
Confidence 32 333333 4899999998766554322 3444 4455 88877662 0 12322333 33
Q ss_pred ccCCCCCCCeEecCCcchhhhHHHHHHHHHHh
Q 014890 205 ADAYKPDEPIISNASCTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 205 ~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f 236 (416)
+-.+.+.-.||..+.+....+.-+...+.+..
T Consensus 147 P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~l 178 (286)
T PRK07819 147 PVPVLPLVELVPTLVTSEATVARAEEFASDVL 178 (286)
T ss_pred CcccCceEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 32222334577777777777777777766655
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=88.50 E-value=0.55 Score=47.93 Aligned_cols=96 Identities=26% Similarity=0.332 Sum_probs=53.8
Q ss_pred EEEEccChhHHHHHHHHHhCCCCCc-eEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCC
Q 014890 71 VAINGFGRIGRNFLRCWHGRKDSPL-EVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (416)
Q Consensus 71 VaINGfGrIGR~vlr~l~~~~~~~~-~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p 149 (416)
|.|.|.|.+|+.+++.|.++.. + +|+... - +.+.+..+.+ ... ...++ .......|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~--~~~v~va~-r-~~~~~~~~~~--~~~---~~~~~-------------~~~~d~~~~ 58 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP--FEEVTVAD-R-NPEKAERLAE--KLL---GDRVE-------------AVQVDVNDP 58 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC--E-EEEEEE-S-SHHHHHHHHT----T---TTTEE-------------EEE--TTTH
T ss_pred CEEEcCcHHHHHHHHHHhcCCC--CCcEEEEE-C-CHHHHHHHHh--hcc---cccee-------------EEEEecCCH
Confidence 6899999999999999988753 4 544443 2 4444444442 100 00111 111112233
Q ss_pred CCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcC
Q 014890 150 VNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (416)
Q Consensus 150 ~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsa 190 (416)
+.+.=--.+.|+||.|.|.|....-++..+++|+ -.|+.
T Consensus 59 ~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~--~yvD~ 97 (386)
T PF03435_consen 59 ESLAELLRGCDVVINCAGPFFGEPVARACIEAGV--HYVDT 97 (386)
T ss_dssp HHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT---EEEES
T ss_pred HHHHHHHhcCCEEEECCccchhHHHHHHHHHhCC--Ceecc
Confidence 2221112367999999999988888889999999 46663
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=88.40 E-value=1.4 Score=51.67 Aligned_cols=99 Identities=21% Similarity=0.152 Sum_probs=62.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCce------------EEEEecCCChhHHhhhhccccccccCCCceeeecCCeEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLE------------VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGIS 135 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~------------vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~ 135 (416)
+.||+|.|.|+||+..++.|.+.++ .+ +|+|-|. +++.+..+.+- + ++ +
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~--~~~~~~~~~~~~~~lV~VaD~-~~~~a~~la~~---~---~~-~--------- 629 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKT--ISYYGDDSEEPTDVHVIVASL-YLKDAKETVEG---I---EN-A--------- 629 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcC--ccccccccccccccEEEEECC-CHHHHHHHHHh---c---CC-C---------
Confidence 3599999999999999999976532 44 7888886 44444333320 0 00 0
Q ss_pred ECCEEEEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 136 VDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 136 v~G~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
+.+.+- -.|++++.=.-.++|+||-|++.+...+-+...+++|. . +++..
T Consensus 630 ---~~v~lD-v~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGk-H-vv~ek 679 (1042)
T PLN02819 630 ---EAVQLD-VSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKK-H-LVTAS 679 (1042)
T ss_pred ---ceEEee-cCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCC-C-EEECc
Confidence 112220 12333321000268999999999999999999999997 3 44443
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=88.31 E-value=0.94 Score=47.76 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=25.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.-+|+|.|+|.||+.+++.+.... .+|+++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~G---a~ViV~d 225 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMG---ARVIVTE 225 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCc---CEEEEEe
Confidence 458999999999999999888764 6776664
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.27 E-value=0.61 Score=45.75 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=26.6
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|++||||.|+|.+|+.+++.+.... ++|.+.|
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g---~~v~~~d 32 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAG---YSLVVYD 32 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCC---CeEEEEc
Confidence 5579999999999999999998754 6777665
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=88.12 E-value=1.3 Score=42.62 Aligned_cols=30 Identities=10% Similarity=0.286 Sum_probs=24.9
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
||.|.| +|.||+.+++.|.++. .+|.++..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g---~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS---VPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC---CcEEEEeC
Confidence 578999 8999999999998874 67777754
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.83 E-value=2.6 Score=41.80 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=23.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
+||+|.|.|.+|..++..+...+- . +|+.+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~-~-ev~L~D 33 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKEL-G-DVVLFD 33 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-e-EEEEEE
Confidence 699999999999999988876531 1 665553
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.74 E-value=0.89 Score=45.49 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.4
Q ss_pred cceeEEEEccChhHHHHHHHHHhCC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
+.++|+|.|+|.||+.+.|.+.++.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g 26 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG 26 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC
Confidence 4579999999999999999998875
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.15 E-value=0.86 Score=49.25 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=27.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+||+.+++.+.... ++|++.+.
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~ 169 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFG---MKVLAYDP 169 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 358999999999999999988764 88888875
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=86.05 E-value=2.1 Score=38.21 Aligned_cols=80 Identities=23% Similarity=0.217 Sum_probs=45.3
Q ss_pred eeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||+|.|. |.||..++-.+..+.-. =||+-+....+ ..-+.. .|-.|..+.. +..+.+.. .
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~-~ei~L~D~~~~-~~~g~a--~Dl~~~~~~~-------------~~~~~i~~-~ 62 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA-DEIVLIDINED-KAEGEA--LDLSHASAPL-------------PSPVRITS-G 62 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS-SEEEEEESSHH-HHHHHH--HHHHHHHHGS-------------TEEEEEEE-S
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC-CceEEeccCcc-cceeee--hhhhhhhhhc-------------cccccccc-c
Confidence 59999998 99999999988876421 14544443201 111111 1332322111 12234443 4
Q ss_pred CCCCCCCCCccccEEEcCCCCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFV 170 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~ 170 (416)
+.+++ .+.|+||-+.|.-.
T Consensus 63 ~~~~~----~~aDivvitag~~~ 81 (141)
T PF00056_consen 63 DYEAL----KDADIVVITAGVPR 81 (141)
T ss_dssp SGGGG----TTESEEEETTSTSS
T ss_pred ccccc----ccccEEEEeccccc
Confidence 45555 38999999999854
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=85.99 E-value=1.5 Score=45.95 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=25.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+|+|.|+|.||+.+++.|...+- -+|+.+|.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~--~~V~v~~r 212 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGV--GKILIANR 212 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCC--CEEEEEeC
Confidence 589999999999999999987541 36666775
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.90 E-value=2.1 Score=45.07 Aligned_cols=98 Identities=23% Similarity=0.269 Sum_probs=60.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
+||-|.|.|.||+.+++-|.++.+ .+|. |-|- +++..+... ++..++ ++ .+.+|- .+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d--~~V~-iAdR-s~~~~~~i~--~~~~~~----v~-----~~~vD~--------~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD--GEVT-IADR-SKEKCARIA--ELIGGK----VE-----ALQVDA--------AD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC--ceEE-EEeC-CHHHHHHHH--hhcccc----ce-----eEEecc--------cC
Confidence 689999999999999999888764 4543 3443 344444443 222221 11 222221 11
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
.+.+.=--.+.|+||.|.+.|.+..-.+..+++|+. .++..
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~--yvDts 99 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGVD--YVDTS 99 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCC--EEEcc
Confidence 111000012449999999999999988899999994 44444
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.82 E-value=0.96 Score=47.23 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=26.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
..+|||.|+|.||+.+.+.+...+ ++|++.+
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G---~~V~~~D 146 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLG---WKVLVCD 146 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCC---CEEEEEC
Confidence 468999999999999999998765 8887664
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.75 E-value=1.1 Score=50.00 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=29.3
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
.+++||||.|+|+||+.+++.|...+ .+|++++..
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G---~~V~~~dr~ 401 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQG---HTVLAYSRS 401 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCc---CEEEEEECC
Confidence 34689999999999999999998754 688888764
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=85.69 E-value=0.6 Score=38.82 Aligned_cols=92 Identities=26% Similarity=0.322 Sum_probs=57.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEE-ec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV-SN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~-~~ 146 (416)
+.||+|.|.|+.|+.++...+... .+.++++=|. ++ ++. + -.++| ++|+ +.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~--g~~i~~~~dv-~~-------------~~~--------G--~~i~g--ipV~~~~ 54 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMR--GFGIVAVFDV-DP-------------EKI--------G--KEIGG--IPVYGSM 54 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHH--CECEEEEEEE-CT-------------TTT--------T--SEETT--EEEESSH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHc--CCCCEEEEEc-CC-------------Ccc--------C--cEECC--EEeeccH
Confidence 368999999999999885555432 2777777653 11 111 1 11344 4454 22
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
++..+. .++|+.+=|.+.....+.+...+++|.|.++.-+|
T Consensus 55 ~~l~~~----~~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 55 DELEEF----IEIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp HHHHHH----CTTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred HHhhhh----hCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 222111 13899999998888888888999999999876554
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.68 E-value=1.5 Score=44.53 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
.||+|.|.|.+|..++..+..++
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~g 29 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKN 29 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC
Confidence 58999999999999988777654
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=85.58 E-value=3.5 Score=41.37 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=25.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..||+|.|.|.||+.+++.+..... -+|..+|-
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~--~~V~v~~r 210 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGV--AEITIANR 210 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCC--CEEEEEeC
Confidence 4689999999999999999887431 34555653
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=85.28 E-value=1.9 Score=43.95 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=51.1
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECC-EEEEEEeccC
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG-KVIQVVSNRN 148 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G-~~I~v~~~~~ 148 (416)
+|+|.|.|.||-+.+.++.... --+|+++ |. +.+-+++.-++. +....++. +.... ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G--a~~Viv~-d~-~~~Rl~~A~~~~--------------g~~~~~~~~~~~~~---~~ 229 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG--ASVVIVV-DR-SPERLELAKEAG--------------GADVVVNPSEDDAG---AE 229 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC--CceEEEe-CC-CHHHHHHHHHhC--------------CCeEeecCccccHH---HH
Confidence 8999999999988755554443 2466666 43 333333322211 11111111 11000 00
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
...+.. ..|+|+||||+|.....+.+-..++.|-+=+++.-+.
T Consensus 230 ~~~~t~-g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 230 ILELTG-GRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred HHHHhC-CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccC
Confidence 001111 1489999999995554556666666555334443343
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.28 E-value=0.99 Score=48.78 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=27.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+||+.+++.+...+ ++|++.+.
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~ 171 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFG---MKVIAYDP 171 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 468999999999999999988764 89888875
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.26 E-value=1.5 Score=45.58 Aligned_cols=31 Identities=35% Similarity=0.421 Sum_probs=24.9
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEE
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
+.||+|.|+ |.||+.+.+++.++. ..+|.++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~--~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM--QLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC--CCEEEEE
Confidence 469999999 999999999998652 3676555
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.16 E-value=1.1 Score=45.63 Aligned_cols=33 Identities=36% Similarity=0.463 Sum_probs=25.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.++|||.|+|+||+.+++.+...- .++|.+.+.
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~--g~~V~~~d~ 178 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGY--GSDVVAYDP 178 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC--CCEEEEECC
Confidence 468999999999999999884221 278776653
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=84.90 E-value=2.2 Score=38.32 Aligned_cols=110 Identities=22% Similarity=0.344 Sum_probs=59.7
Q ss_pred EEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc-cccccccCCCceeeecCC-------eEEECCEEE
Q 014890 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGTD-------GISVDGKVI 141 (416)
Q Consensus 71 VaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk-yDS~~G~f~~~v~~~~~~-------~i~v~G~~I 141 (416)
|+|.| +|-||++.|+.+.+.+ ++|+|+++---.+.+.+..+.+ |...| +-+.++. .+.-.+..+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~-d~f~v~~Lsa~~n~~~L~~q~~~f~p~~------v~i~~~~~~~~l~~~~~~~~~~~ 73 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHP-DKFEVVALSAGSNIEKLAEQAREFKPKY------VVIADEEAYEELKKALPSKGPGI 73 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCT-TTEEEEEEEESSTHHHHHHHHHHHT-SE------EEESSHHHHHHHHHHHHHTTSSS
T ss_pred CEEEcCCcHHHHHHHHHHHhCC-CceEEEEEEcCCCHHHHHHHHHHhCCCE------EEEcCHHHHHHHHHHhhhcCCCC
Confidence 68999 9999999999998875 3699999976556666655443 22111 1100000 000011122
Q ss_pred EEEeccC-CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 142 QVVSNRN-PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 142 ~v~~~~~-p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
+++...+ ..++- ...++|+|+-+.-.|...+-.-..+++| |++.+.
T Consensus 74 ~v~~G~~~l~~~~-~~~~~D~vv~Ai~G~aGL~pt~~Ai~~g-k~iaLA 120 (129)
T PF02670_consen 74 EVLSGPEGLEELA-EEPEVDIVVNAIVGFAGLKPTLAAIKAG-KDIALA 120 (129)
T ss_dssp EEEESHHHHHHHH-THTT-SEEEE--SSGGGHHHHHHHHHTT-SEEEE-
T ss_pred EEEeChHHHHHHh-cCCCCCEEEEeCcccchHHHHHHHHHCC-CeEEEe
Confidence 3322111 01110 1136788888888887777777778888 455553
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.75 E-value=4.9 Score=38.87 Aligned_cols=137 Identities=19% Similarity=0.221 Sum_probs=71.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|.|.|.||...++.+.... .. |+++ +. +.+.+..+.+ +|- + ..++.+.. . .
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G---~~~Vi~~-~~-~~~r~~~a~~----~Ga---~--------~~i~~~~~---~-~ 177 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAG---AARVVAA-DP-SPDRRELALS----FGA---T--------ALAEPEVL---A-E 177 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEE-CC-CHHHHHHHHH----cCC---c--------EecCchhh---H-H
Confidence 37999999999999888776654 44 6666 32 2333322221 221 0 01111000 0 0
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccC-CCCCCCeEecCCcchhhhH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA-YKPDEPIISNASCTTNCLA 226 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~-y~~~~~IISnaSCTTn~La 226 (416)
...++. ...++|+||||+|.-...+.+-..++.|.+-|++...... .+ ..+|... +.+...|+..-..+...+.
T Consensus 178 ~~~~~~-~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~-~~---~~i~~~~~~~~~~~i~g~~~~~~~~~~ 252 (280)
T TIGR03366 178 RQGGLQ-NGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPG-GP---VALDPEQVVRRWLTIRGVHNYEPRHLD 252 (280)
T ss_pred HHHHHh-CCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCC-Cc---eeeCHHHHHhCCcEEEecCCCCHHHHH
Confidence 000011 1237999999999766566677778777754444433211 11 1233332 2233456655444445566
Q ss_pred HHHHHHHH
Q 014890 227 PFVKVLDQ 234 (416)
Q Consensus 227 p~lkvL~~ 234 (416)
.+++.|.+
T Consensus 253 ~~~~~l~~ 260 (280)
T TIGR03366 253 QAVRFLAA 260 (280)
T ss_pred HHHHHHHh
Confidence 67777665
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=84.72 E-value=1.2 Score=43.70 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=26.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||+|.|.|.||..+.+.|.+.+ .+|.+++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g---~~V~~~d~ 31 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG---HTVYGVSR 31 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC---CEEEEEEC
Confidence 48999999999999999998764 68777763
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=84.70 E-value=1.4 Score=44.42 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=28.1
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
.++||+|.|+|.||+.+++.|.+.+ .+|++++..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G---~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQG---HTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC---CEEEEEECc
Confidence 3579999999999999999987653 688888754
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=84.55 E-value=1.2 Score=45.85 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=27.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
.+|||+|+|+||+.+++.|.... ++|++.|+.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G---~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSG---VEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCc---CEEEEEECc
Confidence 47999999999999999998764 898887754
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.29 E-value=5 Score=39.95 Aligned_cols=90 Identities=17% Similarity=0.077 Sum_probs=49.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|+|.|.||...+..+.... . .|+++.. +.+.+..+.+ +|. + ..++-+.-.+..
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G---~~~Vi~~~~--~~~~~~~a~~----lGa---~--------~vi~~~~~~~~~-- 228 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLG---AAEIVCADV--SPRSLSLARE----MGA---D--------KLVNPQNDDLDH-- 228 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEeC--CHHHHHHHHH----cCC---c--------EEecCCcccHHH--
Confidence 37999999999999988877664 4 4555432 2333333332 221 0 011110000000
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAk 184 (416)
..+ .. .++|+||||+|.-.+.+.+-..++.|.+
T Consensus 229 -~~~-~~--g~~D~vid~~G~~~~~~~~~~~l~~~G~ 261 (343)
T PRK09880 229 -YKA-EK--GYFDVSFEVSGHPSSINTCLEVTRAKGV 261 (343)
T ss_pred -Hhc-cC--CCCCEEEECCCCHHHHHHHHHHhhcCCE
Confidence 000 01 2589999999975445566677777763
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=84.18 E-value=5.1 Score=40.97 Aligned_cols=138 Identities=20% Similarity=0.166 Sum_probs=69.6
Q ss_pred eeEEEEcc-ChhHHHHHHHHHhCCC-CCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEE-EEe
Q 014890 69 LKVAINGF-GRIGRNFLRCWHGRKD-SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQ-VVS 145 (416)
Q Consensus 69 ikVaINGf-GrIGR~vlr~l~~~~~-~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~-v~~ 145 (416)
.||+|.|. |+||..++..+..++. ..+-++-||.. .. ..+ |-.|..+.. .+. +..
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~-~g----~a~--Dl~~~~~~~---------------~i~~~~~ 76 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANT-PG----VAA--DVSHINTPA---------------QVRGFLG 76 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCC-Ce----eEc--hhhhCCcCc---------------eEEEEeC
Confidence 49999997 9999999998876542 12333333331 11 111 222211110 111 111
Q ss_pred ccCC-CCCCCCCccccEEEcCCCCCCC----Hh------------hHHHHHHcCCCEEEE--cCCCCCCCCeEEeec-Cc
Q 014890 146 NRNP-VNLPWGDLGIDLVIEGTGVFVD----RE------------GAGKHIQAGAKKVLI--TAPGKGDIPTYVVGV-NA 205 (416)
Q Consensus 146 ~~~p-~~i~W~~~gvDiVie~TG~f~s----~~------------~a~~hl~aGAkkVII--sapskd~~ptvV~gV-N~ 205 (416)
..++ +.+ .|+|+||-+.|.-.. +. .++.-.+.|.+.+|| |+|.....|.+.+-+ +.
T Consensus 77 ~~d~~~~l----~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~ 152 (323)
T PLN00106 77 DDQLGDAL----KGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKA 152 (323)
T ss_pred CCCHHHHc----CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHc
Confidence 1111 123 489999999997443 22 222333456555554 666532223222212 11
Q ss_pred cCCCCCCCeEecCCcchhhhHHHHHHHHHHh
Q 014890 206 DAYKPDEPIISNASCTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 206 ~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f 236 (416)
..+ +.+++|.- | +-=.+.+-..|.+++
T Consensus 153 s~~-p~~~viG~--~-~LDs~Rl~~~lA~~l 179 (323)
T PLN00106 153 GVY-DPKKLFGV--T-TLDVVRANTFVAEKK 179 (323)
T ss_pred CCC-CcceEEEE--e-cchHHHHHHHHHHHh
Confidence 122 23678876 3 344557778888888
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=83.88 E-value=1.7 Score=38.28 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=53.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-||.|.|.|-+||.++..|...+- =+|..+|.. .+.+..|.+ . + .+..+.+....+
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~--~~i~i~nRt--~~ra~~l~~--~-~-----------------~~~~~~~~~~~~ 68 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGA--KEITIVNRT--PERAEALAE--E-F-----------------GGVNIEAIPLED 68 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTS--SEEEEEESS--HHHHHHHHH--H-H-----------------TGCSEEEEEGGG
T ss_pred CEEEEECCHHHHHHHHHHHHHcCC--CEEEEEECC--HHHHHHHHH--H-c-----------------CccccceeeHHH
Confidence 589999999999999999998752 136668863 333333331 0 0 111122322222
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCC--EEEEcC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK--KVLITA 190 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAk--kVIIsa 190 (416)
.. -.....|+||.||+..... --+.+++.+-+ +++++-
T Consensus 69 ~~---~~~~~~DivI~aT~~~~~~-i~~~~~~~~~~~~~~v~Dl 108 (135)
T PF01488_consen 69 LE---EALQEADIVINATPSGMPI-ITEEMLKKASKKLRLVIDL 108 (135)
T ss_dssp HC---HHHHTESEEEE-SSTTSTS-STHHHHTTTCHHCSEEEES
T ss_pred HH---HHHhhCCeEEEecCCCCcc-cCHHHHHHHHhhhhceecc
Confidence 21 1123689999999986542 22344554433 488876
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=83.59 E-value=1.6 Score=45.04 Aligned_cols=32 Identities=25% Similarity=0.228 Sum_probs=26.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+.||.|.|+|++|+.+++.+.... .+|++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG---a~V~v~d~ 198 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG---ATVTILDI 198 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC---CeEEEEEC
Confidence 357999999999999999998765 57777763
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=83.00 E-value=2.5 Score=42.78 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
..||+|.|.|.||..++-.+..++
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~ 29 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQG 29 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC
Confidence 359999999999999999887764
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.98 E-value=7.1 Score=40.43 Aligned_cols=94 Identities=22% Similarity=0.260 Sum_probs=59.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-+|+|.|+|-.|-..++.+.... .+|+|+.-..+-...|.-| +....++.+ +
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~l-----------------GAd~~i~~~--------~ 219 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKL-----------------GADHVINSS--------D 219 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHh-----------------CCcEEEEcC--------C
Confidence 58999999999988888777654 7998887543322222211 111112221 1
Q ss_pred CCCCC-CCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 149 PVNLP-WGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 149 p~~i~-W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
++.++ ..+ -+|++|++.| ..+-+.+-+.++.|-+=|++-.|.
T Consensus 220 ~~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 220 SDALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred chhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCC
Confidence 21111 111 1899999999 888888888898887667776663
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.73 E-value=1.6 Score=48.81 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=27.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
++||||+|+|+||+.+++.+...+ ++|++++..
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G---~~V~~~dr~ 84 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQG---HTVLAHSRS 84 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC---CEEEEEeCC
Confidence 469999999999999999998764 688887653
|
|
| >PF12338 RbcS: Ribulose-1,5-bisphosphate carboxylase small subunit; InterPro: IPR024680 This domain is found in the N-terminal region of the small subunit of ribulose-1,5-bisphosphate in plants | Back alignment and domain information |
|---|
Probab=82.02 E-value=0.75 Score=34.25 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=18.4
Q ss_pred CcccccccccccCCCCCcCCCC
Q 014890 18 KGFSEFSGLRNSASLPFGRKSS 39 (416)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~ 39 (416)
.-.+-|+|||+.+.+|..|+..
T Consensus 22 ~mVAPFtGLKS~a~fPvtrK~~ 43 (45)
T PF12338_consen 22 SMVAPFTGLKSTAAFPVTRKSN 43 (45)
T ss_pred ceeeccccccccccCccccccC
Confidence 4678999999999999877754
|
It contains a conserved APF sequence motif. There are also two completely conserved residues (L and P) that may be functionally important. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.74 E-value=1.5 Score=44.91 Aligned_cols=127 Identities=15% Similarity=0.049 Sum_probs=61.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEec-CCChhHHhhhhccccc---cccCCCc-----eeeecCCeEEEC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIND-TGGVKQASHLLKYDST---LGIFEAD-----VKPVGTDGISVD 137 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaINd-~~~~~~~a~LlkyDS~---~G~f~~~-----v~~~~~~~i~v~ 137 (416)
..||.|.|.|.+|..+++.|.... + .+..|.+ ..+...+..-+-|+.. .|+.+.. ++ .-+..+.+
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aG---vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~-~inp~v~i- 98 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAG---IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLR-KINSEVEI- 98 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC---CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHH-HHCCCcEE-
Confidence 458999999999999999988764 3 3333432 2233333322222211 1221110 00 00122222
Q ss_pred CEEEEEEec-cCCCCCCCCCccccEEEcCCCCCCCHhhHH-HHHHcCCCEEEEcCCC-CCCCCeEEeec
Q 014890 138 GKVIQVVSN-RNPVNLPWGDLGIDLVIEGTGVFVDREGAG-KHIQAGAKKVLITAPG-KGDIPTYVVGV 203 (416)
Q Consensus 138 G~~I~v~~~-~~p~~i~W~~~gvDiVie~TG~f~s~~~a~-~hl~aGAkkVIIsaps-kd~~ptvV~gV 203 (416)
..... -+++++.--..+.|+||+||..|.++.... ...+.|.+.|....-+ .+-.+++.+|-
T Consensus 99 ----~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P~~ 163 (338)
T PRK12475 99 ----VPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIPGK 163 (338)
T ss_pred ----EEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECCCC
Confidence 22111 112222212347899999999988775443 3335677654332222 12234555553
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=81.52 E-value=6.2 Score=38.35 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=25.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.+|.|-| .|-||+.+++.|.+++ .+|+++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g---~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG---YTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC---CEEEEEE
Confidence 3799999 8999999999999875 5776654
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=81.47 E-value=3 Score=40.19 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=26.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCC-CCceEEEEecC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAINDT 103 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~-~~~~vVaINd~ 103 (416)
|||+|.|+|.+|..+++.|.+... +..+|++.++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 589999999999999999987641 12377777443
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=81.46 E-value=8.9 Score=40.32 Aligned_cols=91 Identities=21% Similarity=0.208 Sum_probs=51.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
.||.|.|.|.+|..+++.|.++. .+|+.+... +.+....+.++ .+.. | |.+.....
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G---~~V~~~d~~-~~~~~~~~~~~-------------l~~~-----g--v~~~~~~~ 72 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG---ARVTVVDDG-DDERHRALAAI-------------LEAL-----G--ATVRLGPG 72 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCC-chhhhHHHHHH-------------HHHc-----C--CEEEECCC
Confidence 48999999999999999998775 676666432 22111111110 0000 1 11111111
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
+. + ..+.|+||.++|.--+.+......+.|. -|++
T Consensus 73 ~~-~---~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi--~v~~ 107 (480)
T PRK01438 73 PT-L---PEDTDLVVTSPGWRPDAPLLAAAADAGI--PVWG 107 (480)
T ss_pred cc-c---cCCCCEEEECCCcCCCCHHHHHHHHCCC--eecc
Confidence 11 1 1367999999998766666555566676 4454
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.03 E-value=4.9 Score=41.12 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=23.8
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
||+|.|+|.||..+++.|.... .++.+...+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G-~~v~i~~~~ 32 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAG-PDVFIIGYD 32 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcC-CCeEEEEeC
Confidence 7999999999999999998764 234544443
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=80.80 E-value=2.9 Score=40.72 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=72.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhh-ccccccccCCCceeeecCCeEEECC-EEEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLL-KYDSTLGIFEADVKPVGTDGISVDG-KVIQVV 144 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~Ll-kyDS~~G~f~~~v~~~~~~~i~v~G-~~I~v~ 144 (416)
..||.|.|.|-+|-.++..|....-+ +++-|.+ ..++..+..-+ ...+..|+.+.++- .+.-..+|. -.|...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg--~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~--~~~l~~inP~~~V~~~ 86 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVG--KLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVM--AERIRDINPECEVDAV 86 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCEECchhhcchhCcChhhCCCcHHHHH--HHHHHHHCCCcEEEEe
Confidence 46899999999999999999765422 3333432 23444443322 22355666543220 111111221 112221
Q ss_pred ecc-CCCCC-CCCCccccEEEcCCCCCCCHhhHHHHH-HcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcc
Q 014890 145 SNR-NPVNL-PWGDLGIDLVIEGTGVFVDREGAGKHI-QAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCT 221 (416)
Q Consensus 145 ~~~-~p~~i-~W~~~gvDiVie~TG~f~s~~~a~~hl-~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCT 221 (416)
... +++++ .+-..+.|+||+|+..+..+...-.+. +.+ .|+|.-+-....++|..=-|+.-+.|
T Consensus 87 ~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~-------------ip~I~s~g~g~~~dp~~i~i~di~~t 153 (231)
T cd00755 87 EEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK-------------IPVISSMGAGGKLDPTRIRVADISKT 153 (231)
T ss_pred eeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhC-------------CCEEEEeCCcCCCCCCeEEEccEecc
Confidence 110 11111 011235899999998876554332222 223 33333222333444433234444556
Q ss_pred hhhhHHHHHHHHHHh
Q 014890 222 TNCLAPFVKVLDQKF 236 (416)
Q Consensus 222 Tn~Lap~lkvL~~~f 236 (416)
.+| |+++.+.+..
T Consensus 154 ~~~--pla~~~R~~L 166 (231)
T cd00755 154 SGD--PLARKVRKRL 166 (231)
T ss_pred ccC--cHHHHHHHHH
Confidence 654 7777776665
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=80.77 E-value=9 Score=42.36 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=25.3
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.-.|.|.| .|.||+.+++.|++++ .+|+++.
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G---~~Vval~ 111 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLG---FRVRAGV 111 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CeEEEEe
Confidence 34689999 8999999999998875 6777664
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=80.52 E-value=6.1 Score=38.87 Aligned_cols=137 Identities=20% Similarity=0.226 Sum_probs=68.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|+|.|.||..+++.+.... .. |+++.. +.+....+.+ +|- + ..++-+.-.. +
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G---~~~vi~~~~--~~~~~~~~~~----~ga---~--------~~i~~~~~~~---~ 221 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALG---AEDVIGVDP--SPERLELAKA----LGA---D--------FVINSGQDDV---Q 221 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEECC--CHHHHHHHHH----hCC---C--------EEEcCCcchH---H
Confidence 48999999999999988777664 45 776643 2233322221 221 0 0111100000 0
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (416)
...++. ...++|+||||+|.....+.+-.+++.|.+-+++..+.. +.+-+ ....+.+...|+..-.++...+.-
T Consensus 222 ~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~---~~~~~--~~~~~~~~~~i~g~~~~~~~~~~~ 295 (339)
T cd08239 222 EIRELT-SGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGE---LTIEV--SNDLIRKQRTLIGSWYFSVPDMEE 295 (339)
T ss_pred HHHHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCC---cccCc--HHHHHhCCCEEEEEecCCHHHHHH
Confidence 000010 113799999999976555566778888775444443321 11111 011222233455444444455555
Q ss_pred HHHHHHH
Q 014890 228 FVKVLDQ 234 (416)
Q Consensus 228 ~lkvL~~ 234 (416)
+++.+.+
T Consensus 296 ~~~~~~~ 302 (339)
T cd08239 296 CAEFLAR 302 (339)
T ss_pred HHHHHHc
Confidence 5555543
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=80.42 E-value=1.5 Score=45.23 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=24.4
Q ss_pred ccccccccceeEEEEccChhHHHHHHHHHhC
Q 014890 60 YRKVAAQAKLKVAINGFGRIGRNFLRCWHGR 90 (416)
Q Consensus 60 ~~~~~~~m~ikVaINGfGrIGR~vlr~l~~~ 90 (416)
...+...+.-+|||.|+||||+.+++.|...
T Consensus 154 ~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 154 WPLGYDLEGKTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred ccccccccCCEEEEecCcHHHHHHHHhhhhc
Confidence 3444445567999999999999999988764
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=80.33 E-value=7.1 Score=39.16 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=26.3
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|.|-| .|.||+.+++.|.++. .+|+++..
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r 42 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG---YTVKGTVR 42 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeC
Confidence 35799999 7999999999999875 67777643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 416 | ||||
| 3k2b_A | 337 | Crystal Structure Of Photosynthetic A4 Isoform Glyc | 1e-144 | ||
| 1rm5_O | 337 | Crystal Structure Of Mutant S188a Of Photosynthetic | 1e-141 | ||
| 1nbo_O | 337 | The Dual Coenzyme Specificity Of Photosynthetic Gly | 1e-141 | ||
| 2pkr_O | 365 | Crystal Structure Of (A+cte)4 Chimeric Form Of Phot | 1e-140 | ||
| 1rm3_O | 337 | Crystal Structure Of Mutant T33a Of Photosynthetic | 1e-140 | ||
| 1jn0_O | 335 | Crystal Structure Of The Non-Regulatory A4 Isoform | 1e-136 | ||
| 2pkq_O | 368 | Crystal Structure Of The Photosynthetic A2b2-Glycer | 1e-116 | ||
| 3b1j_A | 339 | Crystal Structure Of Dehydrogenese Length = 339 | 9e-95 | ||
| 2d2i_A | 380 | Crystal Structure Of Nadp-Dependent Glyceraldehyde- | 5e-93 | ||
| 3dbv_O | 334 | Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit | 2e-79 | ||
| 1gd1_O | 334 | Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydr | 8e-77 | ||
| 1dbv_O | 334 | Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit | 3e-76 | ||
| 1npt_O | 334 | Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit | 8e-76 | ||
| 1nq5_O | 334 | Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit | 1e-75 | ||
| 1hdg_O | 332 | The Crystal Structure Of Holo-glyceraldehyde-3-phos | 8e-73 | ||
| 2ep7_A | 342 | Structural Study Of Project Id Aq_1065 From Aquifex | 2e-70 | ||
| 4dib_A | 345 | The Crystal Structure Of Glyceraldehyde-3-Phosphate | 3e-70 | ||
| 3doc_A | 335 | Crystal Structure Of Trka Glyceraldehyde-3-Phosphat | 2e-68 | ||
| 3gnq_A | 344 | Crystal Structure Of Glyceraldehyde-3-Phosphate Deh | 1e-67 | ||
| 3l0d_A | 356 | Crystal Structure Of Glyceraldehyde-3-phosphate Deh | 5e-67 | ||
| 3hja_A | 356 | Crystal Structure Of Glyceraldehyde-3-Phosphate Deh | 1e-63 | ||
| 1obf_O | 335 | The Crystal Structure Of Glyceraldehyde 3-Phosphate | 2e-63 | ||
| 1cer_O | 331 | Determinants Of Enzyme Thermostability Observed In | 3e-63 | ||
| 1vc2_A | 331 | Crystal Structure Of Glyceraldehyde 3-Phosphate Deh | 5e-63 | ||
| 2g82_O | 331 | High Resolution Structures Of Thermus Aquaticus Gly | 5e-62 | ||
| 1s7c_A | 331 | Crystal Structure Of Mes Buffer Bound Form Of Glyce | 7e-61 | ||
| 1gad_O | 330 | Comparison Of The Structures Of Wild Type And A N31 | 9e-61 | ||
| 1gae_O | 330 | Comparison Of The Structures Of Wild Type And A N31 | 5e-60 | ||
| 2vyn_A | 331 | Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotet | 9e-60 | ||
| 3cps_A | 354 | Crystal Structure Of Cryptosporidium Parvum Glycera | 2e-59 | ||
| 1vsu_A | 359 | Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate | 6e-59 | ||
| 1ywg_O | 337 | The Structure Of Glyceraldehyde-3-Phosphate Dehydro | 5e-58 | ||
| 3cif_A | 359 | Crystal Structure Of C153s Mutant Glyceraldehyde 3- | 9e-58 | ||
| 2i5p_O | 342 | Crystal Structure Of Glyceraldehyde-3-Phosphate Deh | 2e-57 | ||
| 2b4r_O | 345 | Crystal Structure Of Glyceraldehyde-3-Phosphate Deh | 5e-57 | ||
| 3pym_A | 332 | Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Res | 1e-56 | ||
| 4iq8_A | 340 | Crystal Structure Of Glyceraldehyde-3-phosphate Deh | 1e-56 | ||
| 1szj_G | 333 | Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydr | 4e-55 | ||
| 3e6a_O | 336 | Crystal Structure And Functional Analysis Of Glycer | 4e-55 | ||
| 3e5r_O | 337 | Crystal Structure And Functional Analysis Of Glycer | 5e-55 | ||
| 1dc4_A | 330 | Structural Analysis Of Glyceraldehyde 3-Phosphate D | 5e-55 | ||
| 1ihx_A | 333 | Crystal Structure Of Two D-Glyceraldehyde-3-Phospha | 5e-55 | ||
| 1k3t_A | 359 | Structure Of Glycosomal Glyceraldehyde-3-Phosphate | 8e-54 | ||
| 1dss_G | 333 | Structure Of Active-Site Carboxymethylated D-Glycer | 9e-54 | ||
| 1a7k_A | 360 | Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase | 1e-53 | ||
| 1gyp_A | 358 | Crystal Structure Of Glycosomal Glyceraldehyde-3-Ph | 1e-53 | ||
| 3sth_A | 361 | Crystal Structure Of Glyceraldehyde-3-Phosphate Deh | 2e-53 | ||
| 2xf8_A | 338 | Structure Of The D-Erythrose-4-Phosphate Dehydrogen | 2e-53 | ||
| 2x5j_O | 339 | Crystal Structure Of The Apoform Of The D-Erythrose | 2e-53 | ||
| 1gpd_G | 334 | Studies Of Asymmetry In The Three-Dimensional Struc | 2e-53 | ||
| 4gpd_1 | 333 | The Structure Of Lobster Apo-D-Glyceraldehyde-3-Pho | 2e-53 | ||
| 1j0x_O | 332 | Crystal Structure Of The Rabbit Muscle Glyceraldehy | 2e-53 | ||
| 2x0n_A | 359 | Structure Of Glycosomal Glyceraldehyde-3-Phosphate | 3e-53 | ||
| 3gpd_R | 334 | Twinning In Crystals Of Human Skeletal Muscle D-Gly | 8e-53 | ||
| 1znq_O | 338 | Crsytal Structure Of Human Liver Gapdh Length = 338 | 1e-52 | ||
| 1u8f_O | 335 | Crystal Structure Of Human Placental Glyceraldehyde | 1e-52 | ||
| 3dmt_C | 359 | Structure Of Glycosomal Glyceraldehyde-3-Phosphate | 2e-52 | ||
| 2x5k_O | 339 | Structure Of An Active Site Mutant Of The D-Erythro | 3e-51 | ||
| 3h9e_B | 346 | Crystal Structure Of Human Sperm-Specific Glycerald | 3e-50 | ||
| 2vyn_D | 334 | Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotet | 3e-48 | ||
| 3lc7_O | 339 | Crystal Structure Of Apo Glyceraldehyde-3-Phosphate | 3e-46 | ||
| 3vaz_P | 344 | Crystal Structure Of Staphylococcal Gapdh1 In A Hex | 3e-46 | ||
| 3lvf_P | 338 | Crystal Structure Of Holo Glyceraldehyde-3-Phosphat | 3e-46 | ||
| 3k73_Q | 336 | Crystal Structure Of Phosphate Bound Holo Glycerald | 3e-46 | ||
| 3lc1_P | 336 | Crystal Structure Of H178n Mutant Of Glyceraldehyde | 3e-45 | ||
| 3hq4_R | 336 | Crystal Structure Of C151s Mutant Of Glyceraldehyde | 4e-45 | ||
| 3k9q_Q | 336 | Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde | 7e-45 | ||
| 3ksd_Q | 336 | Crystal Structure Of C151s+h178n Mutant Of Glyceral | 4e-44 |
| >pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With Nad, From Arabidopsis Thaliana Length = 337 | Back alignment and structure |
|
| >pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform, Complexed With Nadp Length = 337 | Back alignment and structure |
|
| >pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By The Crystal Structure Of A4 Isoform Complexed With Nad Length = 337 | Back alignment and structure |
|
| >pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase, Complexed With Nadp Length = 365 | Back alignment and structure |
|
| >pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform, Complexed With Nadp Length = 337 | Back alignment and structure |
|
| >pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of Spinach Chloroplast Glyceraldehyde-3-Phosphate Dehydrogenase Complexed With Nadp Length = 335 | Back alignment and structure |
|
| >pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase, Complexed With Nadp Length = 368 | Back alignment and structure |
|
| >pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese Length = 339 | Back alignment and structure |
|
| >pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3- Phosphate Dehydrogenase From Synechococcus Sp. Complexed With Nadp+ Length = 380 | Back alignment and structure |
|
| >pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu 33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188 Replaced By Ser Complexed With Nad+ Length = 334 | Back alignment and structure |
|
| >pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus Stearothermophilus At 1.8 Angstroms Resolution Length = 334 | Back alignment and structure |
|
| >pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp 32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188 Replaced By Ser Complexed With Nad+ Length = 334 | Back alignment and structure |
|
| >pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys 149 Replaced By Ala Complexed With Nad+ Length = 334 | Back alignment and structure |
|
| >pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys 149 Replaced By Ser Complexed With Nad+ Length = 334 | Back alignment and structure |
|
| >pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate Dehydrogenase From The Hyperthermophilic Bacterium Thermotoga Maritima At 2.5 Angstroms Resolution Length = 332 | Back alignment and structure |
|
| >pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex Aeolicus Vf5 Length = 342 | Back alignment and structure |
|
| >pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus Anthracis Str. Sterne Length = 345 | Back alignment and structure |
|
| >pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate Dehydrogenase From Brucella Melitensis Length = 335 | Back alignment and structure |
|
| >pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase, Type I From Burkholderia Pseudomallei Length = 344 | Back alignment and structure |
|
| >pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate Dehydrogenase From Bartonella Henselae With Bound Nad Length = 356 | Back alignment and structure |
|
| >pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Borrelia Burgdorferi Length = 356 | Back alignment and structure |
|
| >pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate Dehydrogenase From Alcaligenes Xylosoxidans At 1.7 Resolution. Length = 335 | Back alignment and structure |
|
| >pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The Molecular Structure Of Thermus Aquaticus D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5 Angstroms Resolution Length = 331 | Back alignment and structure |
|
| >pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate Dehydrogenase From Thermus Thermophilus Hb8 Length = 331 | Back alignment and structure |
|
| >pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's Loop Motion In Catalysis Length = 331 | Back alignment and structure |
|
| >pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of Glyceraldehyde 3- Phosphate Dehydrogenase From Escherichia Coli Length = 331 | Back alignment and structure |
|
| >pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate Dehydrogenases: Implication For Nad Binding And Cooperativity Length = 330 | Back alignment and structure |
|
| >pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate Dehydrogenases: Implication For Nad Binding And Cooperativity Length = 330 | Back alignment and structure |
|
| >pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer Length = 331 | Back alignment and structure |
|
| >pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum Glyceraldehyde-3-Phosphate Dehydrogenase Length = 354 | Back alignment and structure |
|
| >pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate Dehydrogenase From Cryptosporidium Parvum Length = 359 | Back alignment and structure |
|
| >pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Plasmodium Falciparum Length = 337 | Back alignment and structure |
|
| >pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde 3-Phosphate Dehydrogenase From Cryptosporidium Parvum Length = 359 | Back alignment and structure |
|
| >pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase Isoform 1 From K. Marxianus Length = 342 | Back alignment and structure |
|
| >pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Plasmodium Falciparum At 2.25 Angstrom Resolution Reveals Intriguing Extra Electron Density In The Active Site Length = 345 | Back alignment and structure |
|
| >pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution Length = 332 | Back alignment and structure |
|
| >pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate Dehydrogenase 3 From Saccharomyces Cerevisiae Length = 340 | Back alignment and structure |
|
| >pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase From Palinurus Versicolor Refined 2.0 Angstrom Resolution Length = 333 | Back alignment and structure |
|
| >pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza Sativa Length = 336 | Back alignment and structure |
|
| >pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza Sativa Length = 337 | Back alignment and structure |
|
| >pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate Dehydrogenase From Escherichia Coli: Direct Evidence For Substrate Binding And Cofactor-Induced Conformational Changes Length = 330 | Back alignment and structure |
|
| >pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate Dehydrogenase Complexes: A Case Of Asymmetry Length = 333 | Back alignment and structure |
|
| >pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Cruzi Complexed With Chalepin, A Coumarin Derivative Inhibitor Length = 359 | Back alignment and structure |
|
| >pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated D-Glyceraldehyde-3- Phosphate Dehydrogenase From Palinurus Versicolor Length = 333 | Back alignment and structure |
|
| >pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A Monoclinic Crystal Form Length = 360 | Back alignment and structure |
|
| >pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Leishmania Mexicana: Implications For Structure-Based Drug Design And A New Position For The Inorganic Phosphate Binding Site Length = 358 | Back alignment and structure |
|
| >pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Toxoplasma Gondii Length = 361 | Back alignment and structure |
|
| >pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase From E.Coli In Complex With A Nad Cofactor Analog (3- Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate Anion Length = 338 | Back alignment and structure |
|
| >pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The D-Erythrose-4-Phosphate Dehydrogenase From E. Coli Length = 339 | Back alignment and structure |
|
| >pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase Length = 334 | Back alignment and structure |
|
| >pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase At 3.0 Angstroms Resolution Length = 333 | Back alignment and structure |
|
| >pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh) Length = 332 | Back alignment and structure |
|
| >pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Brucei Determined From Laue Data Length = 359 | Back alignment and structure |
|
| >pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle D-Glyceraldehyde-3- Phosphate Dehydrogenase Length = 334 | Back alignment and structure |
|
| >pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh Length = 338 | Back alignment and structure |
|
| >pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3- Phosphate Dehydrogenase At 1.75 Resolution Length = 335 | Back alignment and structure |
|
| >pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Cruzi In Complex With The Irreversible Iodoacetate Inhibitor Length = 359 | Back alignment and structure |
|
| >pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The D-Erythrose-4-Phosphate Dehydrogenase From E. Coli Length = 339 | Back alignment and structure |
|
| >pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer Length = 334 | Back alignment and structure |
|
| >pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicllin Resistant Staphylococcus Aureus (Mrsa252) Length = 339 | Back alignment and structure |
|
| >pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal Space Group Length = 344 | Back alignment and structure |
|
| >pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin Resistant Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution Length = 338 | Back alignment and structure |
|
| >pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252 At 2.5 Angstrom Resolution Length = 336 | Back alignment and structure |
|
| >pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1) From Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.0 Angstrom Resolution. Length = 336 | Back alignment and structure |
|
| >pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) Complexed With Nad From Staphylococcus Aureus Mrsa252 At 2.2 Angstrom Resolution Length = 336 | Back alignment and structure |
|
| >pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde 3-Phosphate Dehydrogenase 1 From Methicillin Resistant Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom Resolution Length = 336 | Back alignment and structure |
|
| >pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2 Angstrom Resolution Length = 336 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 416 | |||
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 0.0 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 0.0 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 0.0 | |
| 3doc_A | 335 | Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, | 0.0 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 0.0 | |
| 4dib_A | 345 | GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n | 0.0 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 0.0 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 0.0 | |
| 2g82_O | 331 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G | 0.0 | |
| 1obf_O | 335 | Glyceraldehyde 3-phosphate dehydrogenase; glycolyt | 0.0 | |
| 2ep7_A | 342 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o | 0.0 | |
| 3hja_A | 356 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n | 0.0 | |
| 3lvf_P | 338 | GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase | 0.0 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 1e-176 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 1e-174 | |
| 2b4r_O | 345 | Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st | 1e-172 | |
| 3ids_C | 359 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g | 1e-171 | |
| 3pym_A | 332 | GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase | 1e-171 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 1e-169 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 1e-169 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 1e-165 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 1e-92 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 3e-85 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 1e-76 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 3e-64 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-06 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 1e-05 |
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* Length = 337 | Back alignment and structure |
|---|
Score = 648 bits (1675), Expect = 0.0
Identities = 305/349 (87%), Positives = 319/349 (91%), Gaps = 13/349 (3%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KLKVAINGFGRIGRNFLRCWHGRKDSPL+VV INDTGGVKQASHLLKYDS LG F+ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G ISVDGKVI+VVS+RNPVNLPWGD+GIDLVIEGTGVFVDR+GAGKH+QAGAKKVL
Sbjct: 61 TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
ITAPGKGDIPTYVVGVN + Y + IISNASCTTNCLAPFVKVLDQKF
Sbjct: 121 ITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKF----------- 169
Query: 248 CAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAA LNIVPTSTGAAKAVALVLP LKGK
Sbjct: 170 --GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGK 227
Query: 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVS+DFR
Sbjct: 228 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFR 287
Query: 368 CSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
C+DVSST+DSSLT+VMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct: 288 CTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 336
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* Length = 339 | Back alignment and structure |
|---|
Score = 635 bits (1640), Expect = 0.0
Identities = 234/350 (66%), Positives = 272/350 (77%), Gaps = 16/350 (4%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
++VAINGFGRIGRNFLRCW GR+++ LEVVAIN+T + A+HLL+YDS LG F AD+
Sbjct: 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS 61
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
+ I+V+GK +++V +RNP+NLPW + IDLVIE TGVFV EGA KHIQAGAKKVL
Sbjct: 62 YDE-NSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVL 120
Query: 188 ITAPGKG-DIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
ITAPGKG + TYV+GVN Y+ D +ISNASCTTNCLAP KVL F
Sbjct: 121 ITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNF--------- 171
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305
GIIKGTMTTTHSYT DQR+LDASHRDLRRARAAA+NIVPT+TGAAKAVALV+P LK
Sbjct: 172 ----GIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELK 227
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
GKLNGIALRVPTPNVSVVDLVVQV K T E+VN ++++ +KGI+ D PLVS D
Sbjct: 228 GKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSD 287
Query: 366 FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415
FR +D SS VDSSLTLVM D+VKVIAWYDNEWGYSQRVVDLA++ A W
Sbjct: 288 FRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKW 337
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A Length = 380 | Back alignment and structure |
|---|
Score = 635 bits (1640), Expect = 0.0
Identities = 232/350 (66%), Positives = 270/350 (77%), Gaps = 16/350 (4%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
++VAINGFGRIGRNFLRCW GR+++ LEVVAIN+T + A+HLL+YDS LG F AD+
Sbjct: 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS 61
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
+ I+V+GK +++V +RNP+NLPW + IDLVIE TGVFV EGA KHIQAGAKKVL
Sbjct: 62 YDE-NSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVL 120
Query: 188 ITAPGKG-DIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
ITAPGK + TYV+GVN Y+ D +ISNASCTTNCLAP KVL F
Sbjct: 121 ITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNF--------- 171
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305
GIIKGTMTTTHSYT DQR+LDASHRDLRRARAAA+NIVPT+TGAAKAVALV+P LK
Sbjct: 172 ----GIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELK 227
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
GKLNGIALRVPTPNVSVVDLVVQV K T E+VN ++++ +KGI+ D PLVS D
Sbjct: 228 GKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSD 287
Query: 366 FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415
FR +D SS VDSSLTLVM D+VKVIAWYDNEWGYSQRVVDLA++ A
Sbjct: 288 FRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKS 337
|
| >3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* Length = 335 | Back alignment and structure |
|---|
Score = 625 bits (1614), Expect = 0.0
Identities = 179/345 (51%), Positives = 225/345 (65%), Gaps = 14/345 (4%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
++VAINGFGRIGRN LR + ++VVAIND G V+ +HLL+YDS G F +V+
Sbjct: 2 AVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVE 61
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
V D I V I+V + RNP LPW + +D+ +E TG+F R+ A H++AGAK+V+
Sbjct: 62 -VAGDTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVI 120
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
++AP G T V GVN D D +ISNASCTTNCLAP +VL+
Sbjct: 121 VSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTI----------- 169
Query: 248 CAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307
GI KG MTT HSYTGDQ LD H+DL RARAAAL+++PTSTGAAKAV LVLP LKGK
Sbjct: 170 --GIEKGFMTTIHSYTGDQPTLDTMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKGK 227
Query: 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
L+G+A+RVPTPNVSVVDL ++T EEVN A RE+A+ LKGIL DE LVS DF
Sbjct: 228 LDGVAIRVPTPNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFN 287
Query: 368 CSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
SS + T VM MV++++WYDNEWG+S R+ D A +
Sbjct: 288 HDSHSSVFHTDQTKVMDGTMVRILSWYDNEWGFSSRMSDTAVALG 332
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 Length = 332 | Back alignment and structure |
|---|
Score = 624 bits (1612), Expect = 0.0
Identities = 186/343 (54%), Positives = 237/343 (69%), Gaps = 14/343 (4%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
+VAINGFGRIGR R + RK+ +EVVAIND K +HLLKYDS F V+
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVE-Y 60
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
+ + VDGK I+V + +P LPW DLG+D VIE TGVF +RE A H+QAGAKKV+IT
Sbjct: 61 TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT 120
Query: 190 APGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCA 249
AP KG+ T V+G N D KP+ IIS ASCTTN +AP VKVL +KF
Sbjct: 121 APAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKF------------- 167
Query: 250 GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLN 309
GI+ G +TT HSYT DQR+LD H+DLRRARAAA+NI+PT+TGAAKAVALV+P +KGKL+
Sbjct: 168 GIVSGMLTTVHSYTNDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLD 227
Query: 310 GIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCS 369
G+A+RVPTP+ S+ DL V V K+T EEVNA +E+ + LKGI+ DEP+VS D +
Sbjct: 228 GMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGT 287
Query: 370 DVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
S D+++T V+G +VKV +WYDNE+GYS RVVD +++
Sbjct: 288 TFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLELLL 330
|
| >4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis} Length = 345 | Back alignment and structure |
|---|
Score = 622 bits (1606), Expect = 0.0
Identities = 183/353 (51%), Positives = 239/353 (67%), Gaps = 17/353 (4%)
Query: 65 AQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEA 124
+ A +VAINGFGRIGR R E+VAIN + + +HL+KYD+ G F+
Sbjct: 1 SNAMTRVAINGFGRIGRMVFRQAIKESA--FEIVAINASYPSETLAHLIKYDTVHGKFDG 58
Query: 125 DVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184
V+ D + VDGK+I++++NR+P LPW DLG+++VIE TG F +E A H++AGAK
Sbjct: 59 TVEAFE-DHLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAK 117
Query: 185 KVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDR 243
KV++TAPGK + T VVGVN D + +ISNASCTTNCLAP VKVLD++F
Sbjct: 118 KVILTAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQF------- 170
Query: 244 IFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPA 303
GI G MTT H+YT DQ+ +D H+DLRRARA +I+PT+TGAAKA+A VLP
Sbjct: 171 ------GIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPH 224
Query: 304 LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVS 363
L GKL+G+ALRVPTPNVS+VDLVV V + E +N AF+ A+ LKGI+ +EPLVS
Sbjct: 225 LNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVS 284
Query: 364 VDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
+DF + S+ +D T+VMGD VKV+AWYDNEWGYS+RVVDL +V +
Sbjct: 285 IDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEWGYSRRVVDLVTLVVDELA 337
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* Length = 339 | Back alignment and structure |
|---|
Score = 610 bits (1576), Expect = 0.0
Identities = 144/348 (41%), Positives = 204/348 (58%), Gaps = 16/348 (4%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGR-KDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
++VAINGFGRIGRN +R + + + + VVAIN+ +HLLKYD++ G F +V
Sbjct: 2 TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 61
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ D + V I+V+ R+ +LPW +LG+D+V++ TGV+ RE HI AGAKKV
Sbjct: 62 R-QERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 120
Query: 187 LITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
L + PG D+ T V GVN D + + I+SNASCTTNC+ P +K+LD +
Sbjct: 121 LFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAY--------- 171
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305
GI GT+TT HS DQ+++DA H DLRR RAA+ +I+P T A + P
Sbjct: 172 ----GIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFN 227
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
+ IA+RVPT NV+ +DL V V K A EVN +++A GI+ + PLVSVD
Sbjct: 228 DRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVD 287
Query: 366 FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
F S+ VD + T V G ++K + W DNEWG++ R++D +A
Sbjct: 288 FNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* Length = 334 | Back alignment and structure |
|---|
Score = 609 bits (1572), Expect = 0.0
Identities = 198/346 (57%), Positives = 249/346 (71%), Gaps = 17/346 (4%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGRN R D +EVVA+ND +HLLKYDS G +A+V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPD--IEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVS- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + + V+GK I V + R+P NL WG++G+D+V+E TG F RE A KH++AGAKKV+I
Sbjct: 59 VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
+AP K + T V+GVN D Y P +ISNASCTTNCLAPF KVL ++F
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQF----------- 167
Query: 248 CAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307
GI++G MTT HSYT DQR+LD H+DLRRARAAA +I+PT+TGAAKAVALVLP LKGK
Sbjct: 168 --GIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGK 225
Query: 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
LNG+A+RVPTPNVSVVDLV ++ K+ EEVNAA + +A+ ELKGIL+ +EPLVS D+
Sbjct: 226 LNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYN 285
Query: 368 CSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
S VSST+D+ T+V+ MVKV++WYDNE GYS RVVDLA +A+
Sbjct: 286 GSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIAS 331
|
| >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* Length = 331 | Back alignment and structure |
|---|
Score = 608 bits (1570), Expect = 0.0
Identities = 176/348 (50%), Positives = 226/348 (64%), Gaps = 19/348 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R H R +EV IND K +HLLKYDS F +V
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVA- 56
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ VDGK I+ + ++P +PW + G+ +VIE TGVF D + A H++ GAKKV+I
Sbjct: 57 YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 189 TAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
TAP KG+ T V+GVN +AY P IISNASCTTN LAP +KVL++ F
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAF----------- 165
Query: 248 CAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307
G+ K MTT HSYT DQRLLD H+DLRRARAAA+NI+PT+TGAAKA ALVLP+LKG+
Sbjct: 166 --GVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGR 223
Query: 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
+G+ALRVPT S+ D+ + ++ AEEVNAA + +A+ LKGIL+ ++ +V D
Sbjct: 224 FDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIV 283
Query: 368 CSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415
SS VD+ LT +G +MVKV AWYDNEWGY+ RV DL ++V
Sbjct: 284 MDPHSSIVDAKLTKALG-NMVKVFAWYDNEWGYANRVADLVELVLRKG 330
|
| >1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* Length = 335 | Back alignment and structure |
|---|
Score = 604 bits (1561), Expect = 0.0
Identities = 176/347 (50%), Positives = 224/347 (64%), Gaps = 17/347 (4%)
Query: 69 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
++VAING+GRIGRN LR + G K +E+VAIND G K +HL +YD+ G F V
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVS 61
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
V + V+G I+V +NRNP LPWG L +D+V+E TG F +E AG HI+ GAKKV+
Sbjct: 62 -VNGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVI 120
Query: 188 ITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
I+APG D+ T V GVN K + +ISNASCTTNCLAP VK L+ K
Sbjct: 121 ISAPGGADVDATVVYGVNHGTLKSTDTVISNASCTTNCLAPLVKPLNDKL---------- 170
Query: 247 MCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306
G+ G MTT H+YT +Q L D H DLRRAR+A ++++PT TGAA AV VLP L G
Sbjct: 171 ---GLQDGLMTTVHAYTNNQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGDVLPELDG 227
Query: 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
KLNG A+RVPT NVS+VDL + T EEVN + +++ ELKGIL EPLVSVD+
Sbjct: 228 KLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDY 287
Query: 367 RCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
SSTVD+SLT V G +VKV +WYDNEWG+S R++D + +
Sbjct: 288 NHDPASSTVDASLTKVSG-RLVKVSSWYDNEWGFSNRMLDTTVALMS 333
|
| >2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} Length = 342 | Back alignment and structure |
|---|
Score = 596 bits (1539), Expect = 0.0
Identities = 190/355 (53%), Positives = 238/355 (67%), Gaps = 26/355 (7%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
+KV INGFGRIGR+F R GR++ +E+VAIND K +HLLKYDS GIF+ V+
Sbjct: 2 AIKVGINGFGRIGRSFFRASWGREE--IEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVE 59
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
D I VDGK I+V + ++P +PWGDLG+D+VIE TGVF DRE A KH+Q GAKKV+
Sbjct: 60 -AKDDSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVI 118
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
ITAP K T V+GVN + Y P E IISNASCTTNCLAP VKVL++ F
Sbjct: 119 ITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAF---------- 168
Query: 247 MCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306
G+ KG M T H+YT DQRLLD H+D RRARAAA+NIVPT+TGAAKA+ V+P LKG
Sbjct: 169 ---GVEKGYMVTVHAYTNDQRLLDLPHKDFRRARAAAINIVPTTTGAAKAIGEVIPELKG 225
Query: 307 KLNGIALRVPTPNVSVVDLVVQVSKK-TFAEEVNAAFRESADN-------ELKGILSVCD 358
KL+G A RVP P+ S++DL V V+K + EEVN FRE+A LK IL C+
Sbjct: 226 KLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCE 285
Query: 359 EPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
+P+VS D + S+ D+ LT V+ ++V + AWYDNEWGYS R+ DL +A
Sbjct: 286 DPIVSTDIVGNPHSAIFDAPLTQVID-NLVHIAAWYDNEWGYSCRLRDLVIYLAE 339
|
| >3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} Length = 356 | Back alignment and structure |
|---|
Score = 590 bits (1524), Expect = 0.0
Identities = 180/359 (50%), Positives = 234/359 (65%), Gaps = 24/359 (6%)
Query: 61 RKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLG 120
+ +K+AINGFGRIGRN + R +++VAIND K +HLLKYDST G
Sbjct: 14 AQTQGPGSMKLAINGFGRIGRNVFKIAFERG---IDIVAINDLTDPKTLAHLLKYDSTFG 70
Query: 121 IFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFV----DREGAG 176
++ V+ I VDG+ I++++ R+P NLPW LGID+VIE TGVF D+ G
Sbjct: 71 VYNKKVESRD-GAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYL 129
Query: 177 KHI-QAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQK 235
H+ AGAKKV++T P K +I T V+GVN D +SNASCTTNCLAP KVL +
Sbjct: 130 DHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHES 189
Query: 236 FVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAK 295
F GI +G MTT H+YT DQR+LD H DLRRARAAAL+I+PTSTGAAK
Sbjct: 190 F-------------GIEQGLMTTVHAYTNDQRILDLPHSDLRRARAAALSIIPTSTGAAK 236
Query: 296 AVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKK-TFAEEVNAAFRESADN-ELKGI 353
AV LVLP LKGKLNG ++RVP P S+VDL VQ+ KK EE+N+ R++++ ELKGI
Sbjct: 237 AVGLVLPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGI 296
Query: 354 LSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
L ++P+VS D + + SS VD T+V+ + K+++WYDNE+GYS RVVDLA +
Sbjct: 297 LGYTEDPIVSSDIKGNSHSSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKLV 355
|
| >3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* Length = 338 | Back alignment and structure |
|---|
Score = 524 bits (1352), Expect = 0.0
Identities = 151/351 (43%), Positives = 201/351 (57%), Gaps = 26/351 (7%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R + LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 5 VKVAINGFGRIGRLAFRRIQEVEG--LEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVE- 61
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 62 VVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
+AP GD+ T V N E ++S ASCTTN LAP KVL+ F
Sbjct: 122 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDF------------ 169
Query: 249 AGIIKGTMTTTHSYTGDQRLLDASHR--DLRRARAAALNIVPTSTGAAKAVALVLPALKG 306
G+++G MTT H+YTGDQ DA HR D RRARAAA NI+P STGAAKA+ V+P + G
Sbjct: 170 -GLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDG 228
Query: 307 KLNGIALRVPTPNVSVVDLVVQVSKK-TFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
KL+G A RVP S+ +L V + K+ E+VN A + +++ ++ +VS D
Sbjct: 229 KLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASN----ESFGYTEDEIVSSD 284
Query: 366 FRCSDVSSTVDSSLTLVMG---DDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
S D++ T VM +VKV AWYDNE Y+ ++V +A
Sbjct: 285 VVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 335
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* Length = 330 | Back alignment and structure |
|---|
Score = 493 bits (1272), Expect = e-176
Identities = 162/345 (46%), Positives = 222/345 (64%), Gaps = 18/345 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND +++LKYDST G F+ V+
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV++
Sbjct: 59 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
T P K + P +V G N D Y + I+SNASCTTNCLAP KV++ F
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQD-IVSNASCTTNCLAPLAKVINDNF------------ 165
Query: 249 AGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307
GII+G MTT H+ T Q+ +D SH+D R R A+ NI+P+STGAAKAV VLP L GK
Sbjct: 166 -GIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGK 224
Query: 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
L G+A RVPTPNVSVVDL V++ K E++ AA + +A+ E+KG+L ++ +VS DF
Sbjct: 225 LTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFN 284
Query: 368 CSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
+S D+ + + D+ VK+++WYDNE GYS +V+DL ++
Sbjct: 285 GEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 329
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* Length = 354 | Back alignment and structure |
|---|
Score = 488 bits (1260), Expect = e-174
Identities = 161/350 (46%), Positives = 217/350 (62%), Gaps = 21/350 (6%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADV 126
+ + INGFGRIGR LR R D + VVAIND V+ ++LLKYDS G F V
Sbjct: 17 QGTLGINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTV 74
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ V + ++GKV++V ++P +PWG G +V E TGVF E A H++ GAKKV
Sbjct: 75 E-VSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKV 133
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
+I+AP K ++P YV+GVN Y P + +ISNASCTTNCLAP K+++ KF
Sbjct: 134 IISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKF--------- 184
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHR---DLRRARAAALNIVPTSTGAAKAVALVLP 302
GI++G MTT HS T +Q +D + D R R A NI+P STGAAKAV V+P
Sbjct: 185 ----GIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIP 240
Query: 303 ALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLV 362
AL GKL G+A+RVPTP+VSVVDL +++K EE+ A +E+++ +KGI+ + +V
Sbjct: 241 ALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVV 300
Query: 363 SVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
S DF SS D + + + D VK+I+WYDNE GYS R+VDLA VA
Sbjct: 301 STDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVA 350
|
| >2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* Length = 345 | Back alignment and structure |
|---|
Score = 485 bits (1250), Expect = e-172
Identities = 157/352 (44%), Positives = 212/352 (60%), Gaps = 20/352 (5%)
Query: 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEAD 125
A K+ INGFGRIGR R GRKD +EVVAIND + +LLKYDS G F +
Sbjct: 10 AATKLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHGQFPCE 67
Query: 126 VKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKK 185
V + + K + V + ++P +PWG +D+V E TGVF+ +E A H++ GAKK
Sbjct: 68 VT-HADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKK 126
Query: 186 VLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
V+++AP K D P YV+G+N Y + I+SNASCTTNCLAP KV++ +F
Sbjct: 127 VIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRF--------- 177
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHR---DLRRARAAALNIVPTSTGAAKAVALVLP 302
GI++G MTT H+ T +Q ++D + D R R A NI+P STGAAKAV VLP
Sbjct: 178 ----GIVEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLP 233
Query: 303 ALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLV 362
L GKL G+A RVP VSVVDLV ++ K EEV +++A+ LKGIL ++ +V
Sbjct: 234 ELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVV 293
Query: 363 SVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 414
S DF + SS D L + D+ K+++WYDNEWGYS RV+DLA + +
Sbjct: 294 SQDFVHDNRSSIFDMKAGLALNDNFFKLVSWYDNEWGYSNRVLDLAVHITTS 345
|
| >3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* Length = 359 | Back alignment and structure |
|---|
Score = 483 bits (1245), Expect = e-171
Identities = 156/361 (43%), Positives = 218/361 (60%), Gaps = 29/361 (8%)
Query: 69 LKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEAD 125
+KV INGFGRIGR + C G + ++VVA+ D + ++ ++YD+ G F+ +
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 126 VKPVGT-------DGISVDGKVIQVVSN-RNPVNLPWGDLGIDLVIEGTGVFVDREGAGK 177
V + D + V+G I V RNP +LPWG LG++ VIE TG+F + A
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 178 HIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKF 236
H++ GA+KV+I+AP G T V+GVN Y P + ++SNASCTTNCLAP V VL
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVL---- 178
Query: 237 VTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAK 295
+ + G+ G MTT HSYT Q+ +D S +D R RAAA+NI+P++TGAAK
Sbjct: 179 ---VKEGF-----GVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAK 230
Query: 296 AVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILS 355
AV +V+P+ +GKL G++ RVPTP+VSVVDL ++ T +E++AA + ++ +KGIL
Sbjct: 231 AVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILG 290
Query: 356 VCDEPLVSVDFRCSDVSSTVDSSLTLVMG----DDMVKVIAWYDNEWGYSQRVVDLADIV 411
DE LVS DF + SS DS TL K+++WYDNEWGYS RVVDL +
Sbjct: 291 YTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHM 350
Query: 412 A 412
A
Sbjct: 351 A 351
|
| >3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* Length = 332 | Back alignment and structure |
|---|
Score = 481 bits (1241), Expect = e-171
Identities = 164/346 (47%), Positives = 220/346 (63%), Gaps = 19/346 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVK 127
++VAINGFGRIGR +R R + +EVVA+ND A+++ KYDST G + +V
Sbjct: 2 VRVAINGFGRIGRLVMRIALSRPN--VEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVS 59
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
I VDGK I R+P NLPWG +D+ I+ TGVF + + A KHI AGAKKV+
Sbjct: 60 -HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVV 118
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
ITAP P +V+GVN + Y D I+SNASCTTNCLAP KV++ F
Sbjct: 119 ITAPSS-TAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAF----------- 166
Query: 248 CAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306
GI +G MTT HS T Q+ +D SH+D R R A+ NI+P+STGAAKAV VLP L+G
Sbjct: 167 --GIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQG 224
Query: 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
KL G+A RVPT +VSVVDL V+++K+T +E+ + +A+ +LKG+L ++ +VS DF
Sbjct: 225 KLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDF 284
Query: 367 RCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
SS D+S + + VK+++WYDNE+GYS RVVDL + VA
Sbjct: 285 LGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 330
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* Length = 346 | Back alignment and structure |
|---|
Score = 477 bits (1230), Expect = e-169
Identities = 148/348 (42%), Positives = 207/348 (59%), Gaps = 21/348 (6%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADV 126
+L V INGFGRIGR LR + ++VVA+ND + ++ KYDST G ++ V
Sbjct: 7 ELTVGINGFGRIGRLVLRACMEKG---VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSV 63
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ + VD I V + P +PW +G V+E TGV++ + A HI AGA++V
Sbjct: 64 E-FRNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRV 122
Query: 187 LITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
+I+AP D P +V+GVN + Y P I+SNASCTTNCLAP KV+ ++F
Sbjct: 123 VISAPSP-DAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERF--------- 172
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPAL 304
GI++G MTT HSYT Q+ +D S + R R A NI+P STGAAKAV V+P L
Sbjct: 173 ----GIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPEL 228
Query: 305 KGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSV 364
KGKL G+A RVPTP+VSVVDL ++++ + A + +A + GIL+ ++ +VS
Sbjct: 229 KGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVST 288
Query: 365 DFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
DF SS D+ + + D+ VK+I+WYDNE+GYS RVVDL +
Sbjct: 289 DFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYMF 336
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O Length = 337 | Back alignment and structure |
|---|
Score = 475 bits (1225), Expect = e-169
Identities = 156/349 (44%), Positives = 217/349 (62%), Gaps = 19/349 (5%)
Query: 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFE-A 124
K+K+ INGFGRIGR R +D +E+VA+ND +++ KYD+ G ++ +
Sbjct: 2 GKIKIGINGFGRIGRLVARVALQSED--VELVAVNDPFITTDYMTYMFKYDTVHGQWKHS 59
Query: 125 DVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184
D+K + + + K + V RNP +PW + G + V+E TGVF D+E A H++ GAK
Sbjct: 60 DIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAK 119
Query: 185 KVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRI 244
KV+I+AP K D P +V GVN D Y D I+SNASCTTNCLAP KV+ F
Sbjct: 120 KVVISAPSK-DAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNF-------- 170
Query: 245 FPMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPA 303
GII+G MTT H+ T Q+ +D S +D R RAA+ NI+P+STGAAKAV VLP
Sbjct: 171 -----GIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPD 225
Query: 304 LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVS 363
L GKL G++ RVPT +VSVVDL V++ K + + +A + +++ +LKGI+ +E LVS
Sbjct: 226 LNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVS 285
Query: 364 VDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
DF SS D+ + + D+ VK++AWYDNEWGYS RV+DL +A
Sbjct: 286 TDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMA 334
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 Length = 335 | Back alignment and structure |
|---|
Score = 467 bits (1204), Expect = e-165
Identities = 151/348 (43%), Positives = 204/348 (58%), Gaps = 19/348 (5%)
Query: 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEAD 125
K+KV +NGFGRIGR R +++VAIND + ++ +YDST G F
Sbjct: 2 GKVKVGVNGFGRIGRLVTRAAFNSGK--VDIVAINDPFIDLNYMVYMFQYDSTHGKFHGT 59
Query: 126 VKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKK 185
VK + ++G I + R+P + WGD G + V+E TGVF E AG H+Q GAK+
Sbjct: 60 VK-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKR 118
Query: 186 VLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
V+I+AP D P +V+GVN + Y IISNASCTTNCLAP KV+ F
Sbjct: 119 VIISAPSA-DAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNF--------- 168
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPAL 304
GI++G MTT H+ T Q+ +D S + R R A NI+P STGAAKAV V+P L
Sbjct: 169 ----GIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPEL 224
Query: 305 KGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSV 364
GKL G+A RVPT NVSVVDL ++ K +++ +++++ LKGIL + +VS
Sbjct: 225 NGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSS 284
Query: 365 DFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
DF SST D+ + + D VK+I+WYDNE+GYS RVVDL +A
Sbjct: 285 DFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMA 332
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 Length = 337 | Back alignment and structure |
|---|
Score = 281 bits (721), Expect = 1e-92
Identities = 66/348 (18%), Positives = 114/348 (32%), Gaps = 45/348 (12%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADVKP 128
VAING+G +G+ + D ++V+ ++ T + L K VK
Sbjct: 3 AVAINGYGTVGKRVADAIAQQDD--MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKL 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
GI V G V ++ D+VI+ T + + + + G K +
Sbjct: 61 FEKAGIEVAGTVDDMLDEA------------DIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108
Query: 189 TAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
DI ++ N + + SC T L +K L F
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESY-GKDYTRVVSCNTTGLCRTLKPLHDSF----------- 156
Query: 248 CAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL-VLPALKG 306
GI K ++ ++ I+P V L
Sbjct: 157 --GIKKVRAVIVRRGADPAQV----------SKGPINAIIPNPPKLPSHHGPDVKTVLDI 204
Query: 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
++ +A+ VPT + +++V+V + +++ F + + IL ++ L S
Sbjct: 205 NIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFE----DTPRVILISAEDGLTSTAE 260
Query: 367 RCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 414
S L + I DNE Y Q V +DIV N
Sbjct: 261 IMEYAKELGRSRNDLFEIPVWRESITVVDNEIYYMQAVHQESDIVPEN 308
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} Length = 343 | Back alignment and structure |
|---|
Score = 262 bits (672), Expect = 3e-85
Identities = 51/353 (14%), Positives = 110/353 (31%), Gaps = 45/353 (12%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KV ING+G IG+ + D +EV+ + T + ++ V
Sbjct: 2 PAKVLINGYGSIGKRVADAVSMQDD--MEVIGVTKT-----KPDFEARLAVEKGYKLFVA 54
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
+ + + + +++ D+V++G + ++ + K +
Sbjct: 55 IPDNERV-KLFEDAGIPVEGTILDIIED---ADIVVDGAPKKIGKQNLENIYKPHKVKAI 110
Query: 188 ITAP--GKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
+ K + + + + + SC T L + ++
Sbjct: 111 LQGGEKAKDVEDNFNALWSYNRCYGKD-YVRVVSCNTTGLCRILYAINSIA--------- 160
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305
I K + A N V + V V+P +
Sbjct: 161 ----DIKKARIVLVRRAADPNDDKT------GPVNAITPNPVTVPSHHGPDVVSVVPEFE 210
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD----NELKGILSVCDEPL 361
GK+ A+ VPT + + L+V+V +++ A +++ G S
Sbjct: 211 GKILTSAVIVPTTLMHMHTLMVEVDGDVSRDDILEAIKKTPRIITVRAEDGFSSTAKIIE 270
Query: 362 VSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 414
D D + +V ++ + V+ +NE Q V + ++ N
Sbjct: 271 YGRDLG----RLRYDINELVVW-EESINVL---ENEIFLMQAVHQESIVIPEN 315
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 Length = 334 | Back alignment and structure |
|---|
Score = 240 bits (614), Expect = 1e-76
Identities = 50/338 (14%), Positives = 103/338 (30%), Gaps = 48/338 (14%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
K+KV +NG+G IG+ + D +E++ I T ++ K ++
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDD--MELIGITKTK-PDFEAYRAKELGIPVYAASEEF 58
Query: 128 PVG--TDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKK 185
+G V G L +D++++ T + + + +AG K
Sbjct: 59 IPRFEKEGFEVAG------------TLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKA 106
Query: 186 VLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
+ V + + SC T L + + +
Sbjct: 107 IFQGGEKADVAEVSFVAQANYEAALGKNYVRVVSCNTTGLVRTLSAIREYA--------- 157
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305
+ M + D + R A V + V V+P
Sbjct: 158 ----DYVYAVMIRRAADPNDTK---------RGPINAIKPTVEVPSHHGPDVQTVIP--- 201
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD----NELKGILSVCDEPL 361
+ +A VPT + V ++V++ K ++V F + + KG S
Sbjct: 202 INIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIE 261
Query: 362 VSVD--FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE 397
+ D +++ ++ + + + I E
Sbjct: 262 FARDLHREWNNLYEIAVWKESINIKGNRLFYIQAVHQE 299
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 Length = 340 | Back alignment and structure |
|---|
Score = 208 bits (530), Expect = 3e-64
Identities = 47/336 (13%), Positives = 111/336 (33%), Gaps = 45/336 (13%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
VA+NG+G IG+ + D +++V + T +A + + + + +K
Sbjct: 3 NVAVNGYGTIGKRVADAIIKQPD--MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKF 60
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
GI V G V ++ D+V++ T V + ++Q +
Sbjct: 61 EESGIPVAGTVEDLIK------------TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQG 108
Query: 190 APGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCA 249
+ + I SC T L + +++
Sbjct: 109 GEKAEVADISFSALCNYNEALGKKYIRVVSCNTTALLRTICTVNKVS------------- 155
Query: 250 GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGA--AKAVALVLPALKGK 307
+ K T + ++++ +L P + + AK V V+
Sbjct: 156 KVEKVRATIVRRAADQK--------EVKKGPINSLVPDPATVPSHHAKDVNSVIR--NLD 205
Query: 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD----NELKGILSVCDEPLVS 363
+ +A+ PT + + + + + K +++ + + + + + V+
Sbjct: 206 IATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIVLISSKYDAEATAELVEVA 265
Query: 364 VDFRCS--DVSSTVDSSLTLVMGDDMVKVIAWYDNE 397
D + D+ + S ++ + DD V ++ E
Sbjct: 266 RDLKRDRNDIPEVMIFSDSIYVKDDEVMLMYAVHQE 301
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 5e-06
Identities = 39/296 (13%), Positives = 85/296 (28%), Gaps = 89/296 (30%)
Query: 200 VVGVNADAYKPD----------EPIISNASCTTNCLAP---------FVKVLD------Q 234
++ V DA+ + + I+S ++ F +L Q
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 235 KFVTQLNDRIFPMCAGII----KGTMTTTHSYTGDQRLLDASHRD--------------L 276
KFV ++ + I + T Y +QR D + D
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQR--DRLYNDNQVFAKYNVSRLQPY 137
Query: 277 RRARAAALNIVPTS-------TGAAKAVALVLPAL-----KGKLNG----IAL-RVPTPN 319
+ R A L + P G+ K + L + K++ + L +P
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 320 VSV---VDLVVQVSKKTFAEEVNAAFR-----ESADNELKGILS-------------VCD 358
+ L+ Q+ + + + S EL+ +L V +
Sbjct: 197 TVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 359 EPLV-SVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
+ + C + +T +T + I+ + + ++ ++
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLK 309
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} Length = 304 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 1e-05
Identities = 19/140 (13%), Positives = 37/140 (26%), Gaps = 35/140 (25%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
K++ AI G+G IGR L+ D E+ I + L + I + +
Sbjct: 9 KIRAAIVGYGNIGRYALQALREAPD--FEIAGIVRRNPAEVPFELQPFRVVSDIEQLE-- 64
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
+D+ + + A + ++ G
Sbjct: 65 ------------------------------SVDVALVCSPSREVERTALEILKKG-ICTA 93
Query: 188 ITAPGKGDIPTYVVGVNADA 207
+ I + A
Sbjct: 94 DSFDIHDGILALRRSLGDAA 113
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 416 | |||
| 3doc_A | 335 | Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, | 100.0 | |
| 4dib_A | 345 | GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n | 100.0 | |
| 3pym_A | 332 | GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase | 100.0 | |
| 3v1y_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 100.0 | |
| 3ids_C | 359 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g | 100.0 | |
| 3lvf_P | 338 | GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase | 100.0 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 100.0 | |
| 3hja_A | 356 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n | 100.0 | |
| 1obf_O | 335 | Glyceraldehyde 3-phosphate dehydrogenase; glycolyt | 100.0 | |
| 2b4r_O | 345 | Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st | 100.0 | |
| 2ep7_A | 342 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o | 100.0 | |
| 2g82_O | 331 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G | 100.0 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 100.0 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 100.0 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 100.0 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 100.0 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 100.0 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 100.0 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 100.0 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 100.0 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 100.0 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 100.0 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 100.0 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 100.0 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 100.0 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 100.0 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 100.0 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 100.0 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 100.0 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 100.0 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 100.0 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 100.0 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 100.0 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 100.0 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 100.0 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 100.0 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 100.0 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 100.0 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 100.0 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 100.0 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 100.0 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 100.0 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 100.0 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 99.92 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 98.65 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.85 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.73 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.67 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.65 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.58 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 97.53 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.49 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.48 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.45 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.45 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.4 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.39 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.36 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.35 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 97.34 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.33 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.33 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.31 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.29 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 97.25 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.25 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.25 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.23 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.21 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.2 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.19 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.19 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.18 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.18 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.18 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.12 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.11 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.1 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.1 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.1 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 97.08 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.02 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 96.99 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 96.98 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 96.97 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 96.97 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.96 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 96.95 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.93 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 96.91 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 96.86 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.82 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.79 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 96.72 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 96.72 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.71 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 96.66 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 96.6 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 96.54 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 96.47 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.34 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 96.28 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 96.26 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 96.25 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 96.16 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 96.11 | |
| 1r0k_A | 388 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 95.87 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 95.86 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 95.81 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 95.71 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 95.67 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 94.99 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 94.75 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 94.72 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 94.64 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 94.55 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 94.48 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 94.43 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 94.36 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 94.35 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 94.28 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 94.27 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 94.15 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 94.1 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 94.02 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.77 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 93.54 | |
| 2bma_A | 470 | Glutamate dehydrogenase (NADP+); malaria, drug des | 93.52 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 93.45 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 93.34 | |
| 3a06_A | 376 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M | 93.31 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 93.24 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 93.22 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 93.15 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 93.15 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 92.99 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 92.81 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 92.45 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 92.45 | |
| 1bgv_A | 449 | Glutamate dehydrogenase; oxidoreductase; HET: GLU; | 92.37 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 92.2 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 92.18 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 91.99 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 91.96 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 91.94 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 91.83 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 91.72 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 91.7 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 91.52 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 91.51 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 91.38 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 91.33 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 91.23 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 91.2 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 90.98 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 90.88 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 90.87 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 90.77 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 90.77 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 90.63 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 90.6 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 90.58 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 90.53 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 90.43 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 90.4 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 90.2 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 90.19 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 90.13 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 90.1 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 90.09 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 89.99 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 89.96 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 89.94 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 89.91 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 89.9 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 89.83 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 89.81 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 89.65 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 89.64 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 89.63 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 89.62 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 89.38 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 89.24 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 89.2 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 89.13 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 89.1 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 89.1 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 89.04 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 89.0 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 88.96 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 88.91 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 88.82 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 88.76 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 88.72 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 88.28 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 88.21 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 88.06 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 87.97 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 87.84 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 87.69 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 87.59 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 87.55 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 87.53 | |
| 3r3j_A | 456 | Glutamate dehydrogenase; rossman fold, oxidoreduct | 87.43 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 87.4 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 87.3 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 87.24 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 87.17 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 87.08 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 87.07 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 87.03 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 86.83 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 86.78 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 86.76 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 86.64 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 86.57 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 86.47 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 86.42 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 86.23 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 86.05 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 85.82 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 85.65 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 85.46 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 85.3 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 84.9 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 84.78 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 84.77 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 84.63 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 84.6 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 84.58 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 84.55 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 84.54 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 84.44 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 84.42 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 84.36 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 84.33 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 84.33 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 84.21 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 84.21 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 84.18 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 84.01 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 83.97 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 83.74 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 83.74 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 83.46 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 83.45 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 83.44 | |
| 3mw9_A | 501 | GDH 1, glutamate dehydrogenase 1; allostery, inhib | 83.39 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 83.21 | |
| 4fcc_A | 450 | Glutamate dehydrogenase; protein complex, rossmann | 83.19 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 83.18 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 83.11 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 83.05 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 83.05 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 82.72 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 82.68 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 82.57 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 82.26 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 82.21 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 82.16 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 82.07 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 81.91 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 81.75 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 81.54 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 81.36 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 81.27 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 80.62 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 80.5 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 80.41 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 80.21 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 80.04 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 80.68 |
| >3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-123 Score=928.29 Aligned_cols=334 Identities=54% Similarity=0.826 Sum_probs=325.9
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++||||||||||||+++|+++++..++++||||||+.++++++|||||||+||+|+++|+ .++++|.|||++|+|+++
T Consensus 1 m~~kv~INGfGrIGr~v~Ra~~~~~~~~~~ivaiNd~~d~~~~a~l~kyDS~hG~f~~~v~-~~~~~l~i~Gk~I~v~~e 79 (335)
T 3doc_A 1 MAVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVE-VAGDTIDVGYGPIKVHAV 79 (335)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCSEEEEEEECSSCHHHHHHHHHEETTTEECSSCCE-ECSSEEESSSSEEEEECC
T ss_pred CCEEEEEECCCcHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHHhcccCCCCCCCCeEE-EecCEEEECCEEEEEEee
Confidence 6789999999999999999999873245999999999999999999999999999999999 899999999999999999
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhH
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~La 226 (416)
+||.++||+++|+|||+||||.|+++++|+.|+++||||||||+|++|++||||||||++.|+++++||||||||||||+
T Consensus 80 ~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~~p~vV~gVN~~~~~~~~~IISNasCTTn~La 159 (335)
T 3doc_A 80 RNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLA 159 (335)
T ss_dssp SSTTSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCTTCSEECCTTTTGGGCCTTCCEEECCCHHHHHHH
T ss_pred cccccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCCCCCCCEEecccCHHHhCccCCeEecCchhhhhhH
Confidence 99999999999999999999999999999999999999999999998778999999999999988899999999999999
Q ss_pred HHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccC
Q 014890 227 PFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306 (416)
Q Consensus 227 p~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~g 306 (416)
|++|+||++| ||++++|||||+||++|+++|.+|+||||+|++++||||++||++|+++||||+|+|
T Consensus 160 p~lk~L~d~f-------------GI~~g~mTTvha~T~~q~~~D~p~kd~r~~r~aa~NiIP~~tGaakav~kVlPeL~g 226 (335)
T 3doc_A 160 PVAQVLNDTI-------------GIEKGFMTTIHSYTGDQPTLDTMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKG 226 (335)
T ss_dssp HHHHHHHHHT-------------CEEEEEEEEEEECCTTSCSSCCCCSSTTTTSCTTSSCEEEECCHHHHHHHHSGGGTT
T ss_pred HhHHHHHHHc-------------CEEEEEEEeeeeccchhhhhcCccccccccccCcceEecCCCchHHHHHHhccccCC
Confidence 9999999999 999999999999999999999889999999999999999999999999999999999
Q ss_pred CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCc
Q 014890 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDD 386 (416)
Q Consensus 307 kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~ 386 (416)
||+|+|+||||+++|++||+++++|++++|||+++|++|++|+|||||+|+|+|+||+||+|++||||||+.+|++++++
T Consensus 227 kltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~ 306 (335)
T 3doc_A 227 KLDGVAIRVPTPNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSHSSVFHTDQTKVMDGT 306 (335)
T ss_dssp CEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEEETTT
T ss_pred CEEEEEEEeccccccceEEEEEECCCCCHHHHHHHHHHhhcCCcCCeeEEEcCCeEeeeeCCCCCccccCchhhEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCcchhhhHhHHHHHHhhc
Q 014890 387 MVKVIAWYDNEWGYSQRVVDLADIVANN 414 (416)
Q Consensus 387 ~vK~~~WyDNE~gys~R~vdl~~~~~~~ 414 (416)
++|+++||||||||||||+||+.+|++.
T Consensus 307 ~vk~~~WYDNE~gys~r~~dl~~~~~~~ 334 (335)
T 3doc_A 307 MVRILSWYDNEWGFSSRMSDTAVALGKL 334 (335)
T ss_dssp EEEEEEEECTTHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEcCccchHHHHHHHHHHHHhh
Confidence 9999999999999999999999999763
|
| >4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-123 Score=928.61 Aligned_cols=332 Identities=55% Similarity=0.879 Sum_probs=312.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||||||||||+++|++++++ +++||||||+.++++++|||||||+||+|+++|+ .+++.|.|||++|+|++++
T Consensus 4 ~~kv~INGfGrIGr~v~Ra~~~~~--~~~ivaINd~~d~~~~a~llkyDS~hG~f~~~v~-~~~~~l~inGk~I~v~~e~ 80 (345)
T 4dib_A 4 MTRVAINGFGRIGRMVFRQAIKES--AFEIVAINASYPSETLAHLIKYDTVHGKFDGTVE-AFEDHLLVDGKMIRLLNNR 80 (345)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTCS--SSEEEEEECSSCHHHHHHHHHEETTTEECSSCEE-ECSSEEEETTEEEEEECCS
T ss_pred cEEEEEECCCcHHHHHHHHHHhCC--CceEEEEcCCCCHHHHHHHhcccCCCCCCCCcEE-EcCCEEEECCEEEEEeecC
Confidence 589999999999999999999874 4999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCC-CCCeEecCCcchhhhH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLA 226 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~-~~~IISnaSCTTn~La 226 (416)
+|.++||+++|+|||+||||.|+++++|+.|+++||||||||+|+++++||||||||++.|++ +++||||||||||||+
T Consensus 81 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~~~~~IISNaSCTTn~La 160 (345)
T 4dib_A 81 DPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLA 160 (345)
T ss_dssp CGGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTTCSEEECCCHHHHHHH
T ss_pred ChhhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEecCCHHHcCcccCeEEECCchhhhhhH
Confidence 999999999999999999999999999999999999999999999878999999999999997 6899999999999999
Q ss_pred HHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccC
Q 014890 227 PFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306 (416)
Q Consensus 227 p~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~g 306 (416)
|++|+||++| ||++++|||||+||++|+++|.+|+||||+|++++||||++||++|+++||||+|+|
T Consensus 161 p~lkvL~d~f-------------GI~~g~mTTvhA~T~~Q~~~D~p~kd~r~~r~aa~NIIP~~tGaakav~kVlPeL~g 227 (345)
T 4dib_A 161 PVVKVLDEQF-------------GIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPHLNG 227 (345)
T ss_dssp HHHHHHHHHH-------------CEEEEEEEEEECC-------------CCTTSCTTTCCEEECCTHHHHHHHHCGGGTT
T ss_pred HHHHHHHHhc-------------CeEEEEEEeeeeccCCceeccccccccccchhhhhceecCCCchHHHHhhhccccCC
Confidence 9999999999 999999999999999999999988999999999999999999999999999999999
Q ss_pred CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCc
Q 014890 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDD 386 (416)
Q Consensus 307 kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~ 386 (416)
||+|+|+||||+++|++||+++++|++++|||+++|++|++|+|||||+|+|+|+||+||+|++||||||+.+|++++++
T Consensus 228 kltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~As~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~ 307 (345)
T 4dib_A 228 KLHGMALRVPTPNVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGDR 307 (345)
T ss_dssp TEEEEEEECCCSSEEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEEETTT
T ss_pred cEEEEEEEccCcccEEEEEEEEECCCCCHHHHHHHHHHhhcCcccceeeeEcCcEeeeecCCCCcchhhhhhccEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 014890 387 MVKVIAWYDNEWGYSQRVVDLADIVANNW 415 (416)
Q Consensus 387 ~vK~~~WyDNE~gys~R~vdl~~~~~~~~ 415 (416)
++|+++||||||||||||+||+.+|++++
T Consensus 308 ~vk~~~WYDNE~Gys~r~~dl~~~~~~~~ 336 (345)
T 4dib_A 308 KVKVLAWYDNEWGYSRRVVDLVTLVVDEL 336 (345)
T ss_dssp EEEEEEEEETTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCcchHHHHHHHHHHHHhhc
Confidence 99999999999999999999999998764
|
| >3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-122 Score=915.85 Aligned_cols=328 Identities=50% Similarity=0.796 Sum_probs=320.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC-CChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~-~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||||||||||||+++|++++++ +++||||||+ .++++++|||||||+||+|+++|+ .++++|.|||++|+|++++
T Consensus 2 ~kv~INGfGrIGr~v~R~~~~~~--~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~v~-~~~~~l~i~Gk~I~v~~e~ 78 (332)
T 3pym_A 2 VRVAINGFGRIGRLVMRIALSRP--NVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVS-HDDKHIIVDGKKIATYQER 78 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHST--TCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEE-ECSSEEEETTEEEEEECCS
T ss_pred eEEEEECCCcHHHHHHHHHHhCC--CcEEEEEeCCCCCHHHHHHHhcccCCCCCCCCcEE-EcCCEEEECCEEEEEEeec
Confidence 79999999999999999999974 4999999996 899999999999999999999999 8999999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (416)
||.++||+++|+|||+||||.|+++++|+.|+++||||||||+|++| +||||||||++.|+++++||||||||||||+|
T Consensus 79 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d-~p~vV~gVN~~~~~~~~~IISnasCTTn~Lap 157 (332)
T 3pym_A 79 DPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSST-APMFVMGVNEEKYTSDLKIVSNASCTTNCLAP 157 (332)
T ss_dssp SGGGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSCCSS-SCBCCTTTTGGGCCTTCCEEECCCHHHHHHHH
T ss_pred ccccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEECCCCCC-CCeEeeccchhhcCccccEEecCcchhhhhHH
Confidence 99999999999999999999999999999999999999999999985 79999999999999888999999999999999
Q ss_pred HHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccc-hhHHHhhhccccccccCCCChHHHHHHHcccccC
Q 014890 228 FVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306 (416)
Q Consensus 228 ~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~-~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~g 306 (416)
++|+||++| ||++++|||||+||++|+++|.+ ++||||+|++++||||++||++|+++||||+|+|
T Consensus 158 ~lkvL~d~f-------------GI~~g~mTTvha~T~~Q~~vDg~~~kd~r~~r~aa~NiIP~~tGaakav~kVlPeL~g 224 (332)
T 3pym_A 158 LAKVINDAF-------------GIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQG 224 (332)
T ss_dssp HHHHHHHHH-------------CEEEEEEEEEEECCTTSCSSSCCCTTCTGGGSCGGGCCEEEECSHHHHHHHHSGGGTT
T ss_pred HHHHHHHhc-------------CeEEEEEEEEeeccccchhccCCCcccCccccchhhcccCCCCChHHHHHHhhhhhcC
Confidence 999999999 99999999999999999999976 5899999999999999999999999999999999
Q ss_pred CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCc
Q 014890 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDD 386 (416)
Q Consensus 307 kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~ 386 (416)
||+|+|+||||+++|++||+++++|++++|||+++|++|++|+|||||+|+|+|+||+||+|++||||||+.+|++++++
T Consensus 225 kltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~a~~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~~~~~~~~ 304 (332)
T 3pym_A 225 KLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPK 304 (332)
T ss_dssp SEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEEEETT
T ss_pred CEEEEEEEcCCCCcEeeEEEEEECCcCCHHHHHHHHHHhccCccCceeEEEcCCeEeeccCCCCcceEEccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCcchhhhHhHHHHHHhh
Q 014890 387 MVKVIAWYDNEWGYSQRVVDLADIVAN 413 (416)
Q Consensus 387 ~vK~~~WyDNE~gys~R~vdl~~~~~~ 413 (416)
++|+++||||||||||||+||+.+|++
T Consensus 305 ~vk~~~WYDNE~gys~r~~dl~~~~~~ 331 (332)
T 3pym_A 305 FVKLVSWYDNEYGYSTRVVDLVEHVAK 331 (332)
T ss_dssp EEEEEEEECTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCccchHHHHHHHHHHHhc
Confidence 999999999999999999999999975
|
| >3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-121 Score=914.79 Aligned_cols=330 Identities=46% Similarity=0.793 Sum_probs=321.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC-CChhHHhhhhccccccccCCC-ceeeecCC-eEEECCEEEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEA-DVKPVGTD-GISVDGKVIQVV 144 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~-~~~~~~a~LlkyDS~~G~f~~-~v~~~~~~-~i~v~G~~I~v~ 144 (416)
++||||||||||||+++|++++++ +++||||||+ .++++++|||||||+||+|++ +|+ .+++ .|.|||++|+|+
T Consensus 3 ~~kv~INGfGrIGr~v~R~~~~~~--~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~~v~-~~~~~~l~i~Gk~I~v~ 79 (337)
T 3v1y_O 3 KIKIGINGFGRIGRLVARVALQSE--DVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIK-IKDSKTLLLGEKPVTVF 79 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCS--SEEEEEEECTTSCHHHHHHHHHCCTTTCCCCSSCEE-EEETTEEEETTEEEEEE
T ss_pred ceEEEEECCChHHHHHHHHHHhCC--CcEEEEEeCCCCCHHHHHHHhhhccCCCcccCceEE-EcCCcEEEECCEEEEEE
Confidence 489999999999999999999874 5999999997 899999999999999999999 999 7777 999999999999
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhh
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNC 224 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~ 224 (416)
+++||.++||+++|+|||+||||.|+++++|+.|+++||||||||+|++| +||||||||++.|+++++|||||||||||
T Consensus 80 ~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d-~p~vV~gVN~~~~~~~~~IISnasCTTn~ 158 (337)
T 3v1y_O 80 GIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKD-APMFVCGVNEDKYTSDIDIVSNASCTTNC 158 (337)
T ss_dssp CCSSGGGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSCCSS-SCBCCTTTTGGGCCTTCCEEECCCHHHHH
T ss_pred EecCcccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCC-CCeECCCCCHHHcCCCCcEEecCchhhhh
Confidence 99999999999999999999999999999999999999999999999985 89999999999999888999999999999
Q ss_pred hHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccch-hHHHhhhccccccccCCCChHHHHHHHccc
Q 014890 225 LAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVALVLPA 303 (416)
Q Consensus 225 Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~-~d~rr~Raaa~NIIPt~tGaakav~kVlPe 303 (416)
|+|++|+||++| ||++++|||||+||++|+++|.++ +||||+|++++||||++||++|+++||||+
T Consensus 159 Lap~lkvL~d~f-------------GI~~g~mTTvha~T~~q~~~Dg~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPe 225 (337)
T 3v1y_O 159 LAPLAKVIHDNF-------------GIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPD 225 (337)
T ss_dssp HHHHHHHHHHHH-------------CEEEEEEEEEECCCTTSBSSSCCCTTCGGGGSBGGGCCEEEECCHHHHHHHHSGG
T ss_pred HHHHHHHHHHhc-------------CeEEEEEeeeeeccchhhhccCCccccccccccccceeecCCCChHHHHHHhccc
Confidence 999999999999 999999999999999999999776 899999999999999999999999999999
Q ss_pred ccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCccc
Q 014890 304 LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVM 383 (416)
Q Consensus 304 L~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~ 383 (416)
|+|||+|+|+||||+++|++||+++++|++++|||+++|+++++|+|||||+|+|+|+||+||+|++||||||+.+|+++
T Consensus 226 L~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~a~~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~~~~~ 305 (337)
T 3v1y_O 226 LNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIAL 305 (337)
T ss_dssp GTTSEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTBTTEEEECSCCCGGGGTTCCCSEEEETTTCEEE
T ss_pred cCCcEEEEEEEcCCCCcEEEEEEEEECCCCcHHHHHHHHHHhccCccCCeeEEEcCCEEeeccCCCCcceEEecccCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEecCCcchhhhHhHHHHHHhhc
Q 014890 384 GDDMVKVIAWYDNEWGYSQRVVDLADIVANN 414 (416)
Q Consensus 384 ~~~~vK~~~WyDNE~gys~R~vdl~~~~~~~ 414 (416)
+++++|+++||||||||||||+||+.+|+++
T Consensus 306 ~~~~vk~~~WYDNE~gys~r~~dl~~~~~~~ 336 (337)
T 3v1y_O 306 NDNFVKLVAWYDNEWGYSNRVIDLIRHMAKT 336 (337)
T ss_dssp ETTEEEEEEEECTTHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEEEECCccchHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999876
|
| >3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-122 Score=925.01 Aligned_cols=332 Identities=46% Similarity=0.791 Sum_probs=322.7
Q ss_pred cceeEEEEccChhHHHHHHH----HHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCCceeee--------cCCe
Q 014890 67 AKLKVAINGFGRIGRNFLRC----WHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPV--------GTDG 133 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~----l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~--------~~~~ 133 (416)
|++||||||||||||+++|+ +++++ +++|||||| +.++++++|||||||+||+|+++|+ . ++++
T Consensus 1 m~~kv~INGFGrIGr~v~Ra~~~~~~~~~--~~~vvaINd~~~d~~~~a~llkyDS~hG~f~~~v~-~~~~~~~~~~~~~ 77 (359)
T 3ids_C 1 MPIKVGINGFGRIGRMVFQALCEDGLLGT--EIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVT-TTKSSPSVAKDDT 77 (359)
T ss_dssp CCEEEEEECTTHHHHHHHHHHHHTTCBTT--TEEEEEEECSSCCHHHHHHHHHEETTTEECSSCEE-EECSCTTSSSCCE
T ss_pred CceEEEEECCChHHHHHHHHhHHHHhcCC--CcEEEEEecCCCCHHHHHHHhcccCCCCCEeeEEE-ecccccccCCCCE
Confidence 67999999999999999999 56553 599999999 7999999999999999999999999 7 8999
Q ss_pred EEECCEEEEEEe-ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCC-C
Q 014890 134 ISVDGKVIQVVS-NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-D 211 (416)
Q Consensus 134 i~v~G~~I~v~~-~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~-~ 211 (416)
|.|||++|+|++ +++|++|||+++|+|||+||||.|+++++|+.|+++||||||||+|+++++||||||||++.|++ +
T Consensus 78 l~inGk~I~v~~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~~~ 157 (359)
T 3ids_C 78 LVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSE 157 (359)
T ss_dssp EEETTEEEEECCCCSSTTTSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSCCBSSCEECCTTTTGGGCCTTT
T ss_pred EEECCEEEEEEEccCCcccCCccccCccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCCeEEeccCHHHcCCCC
Confidence 999999999998 99999999999999999999999999999999999999999999999878999999999999998 7
Q ss_pred CCeEecCCcchhhhHHHHHHH-HHHhhhhccccccccccceeEEEEEeecccccchhhhccch-hHHHhhhccccccccC
Q 014890 212 EPIISNASCTTNCLAPFVKVL-DQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPT 289 (416)
Q Consensus 212 ~~IISnaSCTTn~Lap~lkvL-~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~-~d~rr~Raaa~NIIPt 289 (416)
++||||||||||||+|++|+| |++| ||++++||||||||++|+++|.+| +||||+|++++||||+
T Consensus 158 ~~IISNaSCTTn~Lap~lkvL~~d~f-------------GI~~g~mTTvha~T~tQ~~vD~~~~kd~r~~r~aa~NiIP~ 224 (359)
T 3ids_C 158 HHVVSNASCTTNCLAPIVHVLVKEGF-------------GVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPS 224 (359)
T ss_dssp CSEEECCCHHHHHHHHHHHHHHHTTC-------------CCSEEEEEEEEECCTTSBSSSCCCTTCTGGGSBGGGCCEEE
T ss_pred CCEEECCchHhhhHHHhhhhhhhccC-------------CeEEEEEeeeeeccchhhhhcCCccccccccccCcceeEcc
Confidence 899999999999999999999 9999 999999999999999999999887 7999999999999999
Q ss_pred CCChHHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCC
Q 014890 290 STGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCS 369 (416)
Q Consensus 290 ~tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~ 369 (416)
+||++|+++||||||+|||+|+|+||||+++|++||+++++|++++|||+++|++|++++|||||+|+|+|+||+||+|+
T Consensus 225 ~tGaakav~kVlPeL~gkltg~avRVPv~~vs~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~Df~~~ 304 (359)
T 3ids_C 225 TTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFIND 304 (359)
T ss_dssp ECSHHHHHHHHSGGGTTSEEEEEEEESCSSCEEEEEEEECSSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTC
T ss_pred CCchHHHHhhhchhhcCceEEEEEEcCCCCcEEEEEEEEECCCCCHHHHHHHHHHhccCccCCceeEecCCEEeeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeCCCCcccC----CceEEEEEEecCCcchhhhHhHHHHHHhhc
Q 014890 370 DVSSTVDSSLTLVMG----DDMVKVIAWYDNEWGYSQRVVDLADIVANN 414 (416)
Q Consensus 370 ~~S~i~D~~~t~v~~----~~~vK~~~WyDNE~gys~R~vdl~~~~~~~ 414 (416)
+||||||+.+|++++ ++++|+++||||||||||||+||+.||+++
T Consensus 305 ~~ssi~d~~~t~~~~~~~~~~~vk~~~WYDNE~Gys~r~vdl~~~~~~~ 353 (359)
T 3ids_C 305 NRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMASK 353 (359)
T ss_dssp CSSEEEEHHHHHHSSCTTCSSEEEEEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred CcceeEecccceeecccCCCCEEEEeEEECCCcchHHHHHHHHHHHHhh
Confidence 999999999999998 899999999999999999999999999875
|
| >3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-120 Score=908.75 Aligned_cols=331 Identities=46% Similarity=0.704 Sum_probs=322.1
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
.|++||||||||||||+++|++++++ +++||||||+.++++++|||||||+||+|+++|+ .+++.|.|||++|+|++
T Consensus 2 ~m~~kv~INGfGrIGr~v~R~~~~~~--~~~ivaind~~d~~~~a~l~kyDS~hG~f~~~v~-~~~~~l~inGk~I~v~~ 78 (338)
T 3lvf_P 2 SMAVKVAINGFGRIGRLAFRRIQEVE--GLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVE-VVDGGFRVNGKEVKSFS 78 (338)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHTST--TEEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEE-EETTEEEETTEEEEEEC
T ss_pred CccEEEEEECCCcHHHHHHHHHHHCC--CceEEEEecCCCHHHHHHHhccCCCCCCcCCeEE-EcCCEEEECCEEEEEEE
Confidence 47899999999999999999999874 5999999999999999999999999999999999 89999999999999999
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhh
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 225 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~L 225 (416)
+++|++|||+++|+|||+||||.|+++++|+.|+++||||||||+|+++++||||||||++.|+++++||||||||||||
T Consensus 79 e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~~~~IISNasCTTn~L 158 (338)
T 3lvf_P 79 EPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSL 158 (338)
T ss_dssp CSCGGGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSCEECCTTTTGGGCCSCCSEEECCCHHHHHH
T ss_pred ecccccCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCCCCCCCEEeccCCHHHcCccCCeEecCchhhhhh
Confidence 99999999999999999999999999999999999999999999999878999999999999998889999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchh--HHHhhhccccccccCCCChHHHHHHHccc
Q 014890 226 APFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHR--DLRRARAAALNIVPTSTGAAKAVALVLPA 303 (416)
Q Consensus 226 ap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~--d~rr~Raaa~NIIPt~tGaakav~kVlPe 303 (416)
+|++|+||++| ||++++||||||||++|+++|.+|+ ||||+|++++||||++||++|+++|||||
T Consensus 159 ap~lkvL~d~f-------------GI~~g~mTTvha~T~~q~~~D~~~~k~d~r~~r~aa~NiIP~~tGaakav~kVlPe 225 (338)
T 3lvf_P 159 APVAKVLNDDF-------------GLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPE 225 (338)
T ss_dssp HHHHHHHHHHH-------------CEEEEEEEEEEECCTTSCSSSCCCTTCCTTTTSCGGGCCEEEECSTTTTGGGTCGG
T ss_pred HHHHHHHHHhc-------------CEEEEEEeeeccccchhhhhcCCccccccccchhhhceEEeCCCchHHHHhhhchh
Confidence 99999999999 9999999999999999999998876 99999999999999999999999999999
Q ss_pred ccCCeeeEEEeeCcccceEEEEEEEEcc-CCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcc
Q 014890 304 LKGKLNGIALRVPTPNVSVVDLVVQVSK-KTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLV 382 (416)
Q Consensus 304 L~gkl~g~avRVPt~~vs~vdl~v~l~k-~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v 382 (416)
|+|||+|+|+||||+++|++||+++++| ++++||||++|++|++|+ |+|+|+|+||+||+|++||||||+.+|++
T Consensus 226 L~gkltg~avRVPv~~~s~~dlt~~lek~~~t~eei~~~lk~As~g~----l~yte~~~VS~Df~~~~~ssi~d~~~t~~ 301 (338)
T 3lvf_P 226 IDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDATQTRV 301 (338)
T ss_dssp GTTSEEEEEEEESCSSCEEEEEEEEESSSSCCHHHHHHHHHHTCCSS----EEEECSCCCGGGGTTCCCSEEEEGGGCEE
T ss_pred hcCcEEEEEEEcCCCceEEEEEEEEEccCCCCHHHHHHHHHHhhcCC----cccccCCEEeEeeCCCCcceEEecccceE
Confidence 9999999999999999999999999999 999999999999999987 99999999999999999999999999999
Q ss_pred cC---CceEEEEEEecCCcchhhhHhHHHHHHhhcCC
Q 014890 383 MG---DDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416 (416)
Q Consensus 383 ~~---~~~vK~~~WyDNE~gys~R~vdl~~~~~~~~~ 416 (416)
++ ++++|+++||||||||||||+||+.||+++.+
T Consensus 302 ~~~~~~~~vk~~~WYDNE~gys~r~~dl~~~~~~~~~ 338 (338)
T 3lvf_P 302 MSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK 338 (338)
T ss_dssp EEETTEEEEEEEEEECTTHHHHHHHHHHHHHHHHHTC
T ss_pred ecCCCCCEEEEEEEECCccchHHHHHHHHHHHHhhcC
Confidence 98 89999999999999999999999999988753
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-119 Score=904.60 Aligned_cols=329 Identities=44% Similarity=0.757 Sum_probs=320.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||||||||||+++|++++++ ++|||||| ..++++++|||||||+||+|+++|+ .++++|.|||++|+|+++
T Consensus 7 ~~kvgInGFGRIGrlv~R~~~~~~---veivainDp~~d~~~~a~l~~yDS~hG~f~~~v~-~~~~~l~i~Gk~I~v~~e 82 (346)
T 3h9e_O 7 ELTVGINGFGRIGRLVLRACMEKG---VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVE-FRNGQLVVDNHEISVYQC 82 (346)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT---CEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEE-EETTEEEETTEEEEEECC
T ss_pred eeEEEEECCChHHHHHHHHHHhCC---CEEEEEeCCCCChhHhcccccccCCCCCCCCcEE-EcCCEEEECCEEEEEEec
Confidence 479999999999999999999874 99999999 5899999999999999999999999 899999999999999999
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCC-CCCeEecCCcchhhh
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCL 225 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~-~~~IISnaSCTTn~L 225 (416)
++|++|||+++|+|||+||||.|+++++|+.|+++||||||||+|++| +||||||||++.|++ +++||||||||||||
T Consensus 83 ~dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps~d-~plvV~gVN~~~~~~~~~~IISNasCTTn~L 161 (346)
T 3h9e_O 83 KEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPD-APMFVMGVNENDYNPGSMNIVSNASCTTNCL 161 (346)
T ss_dssp SSGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCSS-SCBCCTTTTGGGCCTTTCSEEECCCHHHHHH
T ss_pred CChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCC-CCeeCcccCHHHcCcccCCEEECCcchhhhH
Confidence 999999999999999999999999999999999999999999999985 899999999999997 689999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccch-hHHHhhhccccccccCCCChHHHHHHHcccc
Q 014890 226 APFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVALVLPAL 304 (416)
Q Consensus 226 ap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~-~d~rr~Raaa~NIIPt~tGaakav~kVlPeL 304 (416)
+|++|+||++| ||++++||||||||++|+++|.++ +|||++|++++||||++||++|+++||||+|
T Consensus 162 ap~lkvL~d~f-------------GI~~g~mTTvhA~T~tQ~~~Dg~~~kd~r~~r~aa~NiIP~~tGaakavgkViPeL 228 (346)
T 3h9e_O 162 APLAKVIHERF-------------GIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPEL 228 (346)
T ss_dssp HHHHHHHHHHH-------------CEEEEEEEEEEECCTTSBSSSCCCTTSGGGGSBTTTCCEEECCHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHh-------------CeeEEEEeeeeeccCccccccCCCCCCccccccceeeeecccCchHHhhheechhh
Confidence 99999999999 999999999999999999999764 8999999999999999999999999999999
Q ss_pred cCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccC
Q 014890 305 KGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMG 384 (416)
Q Consensus 305 ~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~ 384 (416)
+|||+|+|+||||+++|++||+++++|++++|||+++|++|++|+|||||+|+|+|+||+||+||+||||||+.+|++++
T Consensus 229 ~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~~~~~~ 308 (346)
T 3h9e_O 229 KGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGIALN 308 (346)
T ss_dssp TTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEETTTCEEEE
T ss_pred cCcEEEEEEEcccccceeEEEEEEECCcCCHHHHHHHHHHhccCccCCceeEEcCCeEeeccCCCCCceeEcccccEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEecCCcchhhhHhHHHHHHhhc
Q 014890 385 DDMVKVIAWYDNEWGYSQRVVDLADIVANN 414 (416)
Q Consensus 385 ~~~vK~~~WyDNE~gys~R~vdl~~~~~~~ 414 (416)
++++|+++||||||||||||+||+.||+++
T Consensus 309 ~~~vk~~~WYDNE~gys~r~~dl~~~~~~~ 338 (346)
T 3h9e_O 309 DNFVKLISWYDNEYGYSHRVVDLLRYMFSR 338 (346)
T ss_dssp TTEEEEEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCcchHHHHHHHHHHHHhh
Confidence 999999999999999999999999999865
|
| >3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-120 Score=912.86 Aligned_cols=331 Identities=53% Similarity=0.878 Sum_probs=321.9
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
.|++||||||||||||+++|++++++ |+||||||+.++++++|||||||+||+|+++++ ++++.|.|||++|+|++
T Consensus 19 ~~~~kVaInGfGrIGr~vlr~l~e~~---~~ivaIndl~d~~~~a~llkydS~hG~f~~~v~-~~~~~l~i~Gk~I~v~~ 94 (356)
T 3hja_A 19 PGSMKLAINGFGRIGRNVFKIAFERG---IDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVE-SRDGAIVVDGREIKIIA 94 (356)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHTT---CEEEEEECSSCHHHHHHHHHEETTTEECSSCEE-EETTEEEETTEEEEEEC
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHCC---CCEEEEeCCCCHHHhhhhhccccCCCCCCCCEE-EcCCEEEECCEEEEEEE
Confidence 35799999999999999999999983 999999999999999999999999999999999 89999999999999999
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCC----HhhHHHHHH-cCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCc
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVD----REGAGKHIQ-AGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASC 220 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s----~~~a~~hl~-aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSC 220 (416)
++||++|||++.|+|||+||||.|++ +++|+.|++ +||||||||+|++|++||||||||++.|+++++|||||||
T Consensus 95 ~~dp~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsaps~d~vp~vV~gVN~~~~~~~~~IISNaSC 174 (356)
T 3hja_A 95 ERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASC 174 (356)
T ss_dssp CSSGGGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSCCSSCCEECCTTTSGGGCCTTCCEEECCCH
T ss_pred cCChhhCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCCCCCCCCEEeccCCHHHcCcCccEEECCcc
Confidence 99999999999999999999999999 999999999 9999999999999878999999999999988899999999
Q ss_pred chhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHH
Q 014890 221 TTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALV 300 (416)
Q Consensus 221 TTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kV 300 (416)
|||||+|++|+||++| ||++++|||||+||++|+++|.+++||||+|++++||||++||++|+++||
T Consensus 175 TTn~Lap~lkvL~d~f-------------GI~~g~mTTvhA~T~~Q~~~D~p~kd~r~~r~aa~NIIP~~tGaakav~kV 241 (356)
T 3hja_A 175 TTNCLAPLAKVLHESF-------------GIEQGLMTTVHAYTNDQRILDLPHSDLRRARAAALSIIPTSTGAAKAVGLV 241 (356)
T ss_dssp HHHHHHHHHHHHHHHH-------------CEEEEEEEEEEECCTTSBSSSCCCSSTTTTSBTTTSCEEEECCTTTTHHHH
T ss_pred chhhhhHhHHHHHHhc-------------CeEEEEEEEEEecccccccccCcccccccccccccEEEcCCCchHHHHHHh
Confidence 9999999999999999 999999999999999999999988999999999999999999999999999
Q ss_pred cccccCCeeeEEEeeCcccceEEEEEEEE-ccCCCHHHHHHHHHhccccc-CCCcccccCCCeeeeccCCCCcceeeeCC
Q 014890 301 LPALKGKLNGIALRVPTPNVSVVDLVVQV-SKKTFAEEVNAAFRESADNE-LKGILSVCDEPLVSVDFRCSDVSSTVDSS 378 (416)
Q Consensus 301 lPeL~gkl~g~avRVPt~~vs~vdl~v~l-~k~vs~eeV~~a~~~aa~~~-lkgil~~~~~p~VS~Df~g~~~S~i~D~~ 378 (416)
||+|+|||+|+|+||||+++|++||+++| +|++++|||+++|+++++++ |||||+|+|+|+||+||+|++||||||+.
T Consensus 242 lPeL~gkltg~avRVPv~~~s~~dlt~~l~ek~~t~eeI~~~lk~Aa~g~~lkgil~yte~~~VS~Df~~~~~ssi~d~~ 321 (356)
T 3hja_A 242 LPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSHSSIVDGL 321 (356)
T ss_dssp CGGGTTTEEEEEEEESCSSCEEEEEEEEESCTTCCHHHHHHHHHHHHHSTTTTTTEEEECSCCCGGGGTTCCCSEEEEGG
T ss_pred ccccCCcEEEEEEEcCCCccEeEEEEEEEccCCCCHHHHHHHHHHHhcCchhccccceecCCeEeeeccCCCCceEEcCc
Confidence 99999999999999999999999999999 99999999999999999999 99999999999999999999999999999
Q ss_pred CCcccCCceEEEEEEecCCcchhhhHhHHHHHHhh
Q 014890 379 LTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413 (416)
Q Consensus 379 ~t~v~~~~~vK~~~WyDNE~gys~R~vdl~~~~~~ 413 (416)
+|++++++++|+++||||||||||||+||+.+|++
T Consensus 322 ~t~~~~~~~vk~~~WYDNE~Gys~r~vdl~~~~~~ 356 (356)
T 3hja_A 322 ETMVLENGFAKILSWYDNEFGYSTRVVDLAQKLVK 356 (356)
T ss_dssp GCEECSTTEEEEEEEECTTHHHHHHHHHHHHHHC-
T ss_pred CCEEEcCCEEEEEEEECCccchHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999863
|
| >1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-118 Score=890.16 Aligned_cols=331 Identities=52% Similarity=0.837 Sum_probs=321.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCC-CCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRK-DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~-~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||||||||||||+++|+++++. .++||||||||+.++++++|||||||+||+|+++++ .+++.|.++|++|+|++++
T Consensus 2 ikVaInGfGrIGr~v~r~l~~~~~~~~~evvaInd~~~~~~~a~ll~ydS~hg~f~~~v~-~~~~~l~v~g~~i~v~~~~ 80 (335)
T 1obf_O 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVS-VNGSYMVVNGDKIRVDANR 80 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEE-EETTEEEETTEEEEEECCS
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHHHHHHHhccCCcCCCCCCCEE-EeCCEEEECCEEEEEEEcC
Confidence 79999999999999999999871 135999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCC-eEEeecCccCCCCCCCeEecCCcchhhhH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLA 226 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~p-tvV~gVN~~~y~~~~~IISnaSCTTn~La 226 (416)
||.++||++.|+||||||||.|+++++|+.|+++||||||||+|+++|+| |||||||++.|++.++||||||||||||+
T Consensus 81 dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVviSaps~~dvp~~vV~gVN~~~~~~~~~IISNasCTTn~La 160 (335)
T 1obf_O 81 NPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKSTDTVISNASCTTNCLA 160 (335)
T ss_dssp CGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCCTTSSEECCTTTSGGGCCTTCCEEECCCHHHHHHH
T ss_pred CcccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEECCcccCCCCceEEccCCHHHhCcCccEEeCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999985689 99999999999977789999999999999
Q ss_pred HHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccC
Q 014890 227 PFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306 (416)
Q Consensus 227 p~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~g 306 (416)
|++|+||++| ||++++||||||||++|+++|.+|+||||+|++++||||++||++|+++||||+|+|
T Consensus 161 p~lk~L~d~f-------------GI~~~~mTTvha~T~~q~~~d~~~~d~r~~r~~a~NiIP~~tGaakav~kVlP~L~g 227 (335)
T 1obf_O 161 PLVKPLNDKL-------------GLQDGLMTTVHAYTNNQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGDVLPELDG 227 (335)
T ss_dssp HHHHHHHHHT-------------CEEEEEEEEEEECCTTSCSSCCCCSSTTTTSCTTTCCEEEECCHHHHHHHHCGGGTT
T ss_pred HHHHHHHHhc-------------CeeEEEEEEEchhhhhhhhhcccccccccccchhhccccCCCcchHhHhhhccccCC
Confidence 9999999999 999999999999999999999889999999999999999999999999999999999
Q ss_pred CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCc
Q 014890 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDD 386 (416)
Q Consensus 307 kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~ 386 (416)
||+|+|+||||+++|++||+++|+|++++|||+++|+++++|+|||||+|+|+|+||+||+|++||||||+.+|++ +++
T Consensus 228 kltg~avRVPv~~~s~~dl~v~lek~~t~eei~~~lk~a~~~~lkgil~y~~~~~vS~d~~~~~~ssi~d~~~~~~-~~~ 306 (335)
T 1obf_O 228 KLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVDASLTKV-SGR 306 (335)
T ss_dssp SEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEE-ETT
T ss_pred ceEEEEEEeeccceEEEEEEEEECCCCCHHHHHHHHHHhhhcccCCeecccCCceEeeeeCCCCccceeccccccc-cCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred eEEEEEEecCCcchhhhHhHHHHHHhhc
Q 014890 387 MVKVIAWYDNEWGYSQRVVDLADIVANN 414 (416)
Q Consensus 387 ~vK~~~WyDNE~gys~R~vdl~~~~~~~ 414 (416)
++|+++||||||||||||+||+.||+++
T Consensus 307 ~vk~~~WyDNE~gys~r~~dl~~~~~~~ 334 (335)
T 1obf_O 307 LVKVSSWYDNEWGFSNRMLDTTVALMSA 334 (335)
T ss_dssp EEEEEEEECTTHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEeCCCcchHhHHHHHHHHHhcc
Confidence 9999999999999999999999999764
|
| >2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-117 Score=887.06 Aligned_cols=330 Identities=47% Similarity=0.782 Sum_probs=321.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||||||||||+++|++++++ +|||||||| +.++++++|||||||+||+|+++++ .+++.|.++|++|.|+++
T Consensus 11 ~~kv~INGfGrIGr~v~ra~~~~~--~~evvaInd~~~~~~~~a~l~~yDS~hg~~~~~v~-~~~~~l~v~Gk~i~v~~~ 87 (345)
T 2b4r_O 11 ATKLGINGFGRIGRLVFRAAFGRK--DIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVT-HADGFLLIGEKKVSVFAE 87 (345)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCS--SEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEE-EETTEEEESSCEEEEECC
T ss_pred heEEEEeCCchHHHHHHHHHhhCC--CcEEEEEcCCCCChHHHHHHhccCCCCCcCCCCEE-EcCCEEEECCEEEEEEEc
Confidence 689999999999999999999874 599999999 8899999999999999999999999 889999999999999999
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhH
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~La 226 (416)
++|+++||+++|+||||||||.|+++++|+.|+++||||||||+|+++++||||||||++.|++.++||||||||||||+
T Consensus 88 ~dp~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsaps~~dvplvV~gVN~~~~~~~~~IISNasCTTn~La 167 (345)
T 2b4r_O 88 KDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLA 167 (345)
T ss_dssp SSGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCCTTCCEEECCCHHHHHHH
T ss_pred CCcccCcccccCCCEEEECcCccccHhhHHHHHHCCCCEEEECCCCCCCCCEEEecCCHHHhCCCCCEEECCchHHHHHH
Confidence 99999999999999999999999999999999999999999999998778999999999999977789999999999999
Q ss_pred HHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccch---hHHHhhhccccccccCCCChHHHHHHHccc
Q 014890 227 PFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASH---RDLRRARAAALNIVPTSTGAAKAVALVLPA 303 (416)
Q Consensus 227 p~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~---~d~rr~Raaa~NIIPt~tGaakav~kVlPe 303 (416)
|++|+||++| ||++++|||||+||++|+++|.+| +||||+|++++||||++||++|+++||||+
T Consensus 168 p~lk~L~d~f-------------GI~~~~mTTvhA~T~~q~~~d~~~~~~~d~r~~r~~a~NiIP~~tGaakav~kVlP~ 234 (345)
T 2b4r_O 168 PLAKVINDRF-------------GIVEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPE 234 (345)
T ss_dssp HHHHHHHHHH-------------CEEEEEEEEEECCCTTSCSSSCCCGGGCCGGGGSCTTTCCEEEECCHHHHHHHHSGG
T ss_pred HHHHHHHHhc-------------CeeEEEEEEeehhhchhhhhcccccccCCCccccchhhccCcCCCchHHHHHHhhhh
Confidence 9999999999 999999999999999999999887 899999999999999999999999999999
Q ss_pred ccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCccc
Q 014890 304 LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVM 383 (416)
Q Consensus 304 L~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~ 383 (416)
|+|||+|+|+||||+++|++||+++|+|++++|||+++|+++++|+|||||+|+|+|+||+||+|++||||||+.+|+++
T Consensus 235 L~gkltg~avRVPv~~gs~~dltv~lek~~t~eei~~~lk~a~~~~lkgil~y~~~~~VS~d~~~~~~ssi~d~~~~~~~ 314 (345)
T 2b4r_O 235 LNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFDMKAGLAL 314 (345)
T ss_dssp GTTTEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEEEEEEEE
T ss_pred cCCcEEEEEEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhhcccCCcccccCCCceEEeeCCCCcccccccccCeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEecCCcchhhhHhHHHHHHhh
Q 014890 384 GDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413 (416)
Q Consensus 384 ~~~~vK~~~WyDNE~gys~R~vdl~~~~~~ 413 (416)
+++++|+++||||||||||||+||+.+|++
T Consensus 315 ~~~~vk~~~WyDNE~gys~r~~dl~~~~~~ 344 (345)
T 2b4r_O 315 NDNFFKLVSWYDNEWGYSNRVLDLAVHITT 344 (345)
T ss_dssp ETTEEEEEEEECTTHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEEEeCCCcchHhHHHHHHHHHhc
Confidence 889999999999999999999999999864
|
| >2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-117 Score=885.99 Aligned_cols=331 Identities=57% Similarity=0.927 Sum_probs=320.5
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++||||||||||||+++|++++++ +||||||||+.++++++|||||||+||+|+++++ .+++.|.++|++|+++++
T Consensus 1 m~ikV~InGfGrIGr~v~r~l~~~~--~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~-~~~~~l~v~Gk~i~v~~~ 77 (342)
T 2ep7_A 1 MAIKVGINGFGRIGRSFFRASWGRE--EIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVE-AKDDSIVVDGKEIKVFAQ 77 (342)
T ss_dssp --CEEEEECCSHHHHHHHHHHTTCT--TCEEEEEECSSCHHHHHHHHHEETTTEECSSCEE-ECSSEEEETTEEEEEECC
T ss_pred CceEEEEECCCHHHHHHHHHHHhCC--CceEEEEecCCChHHHhhhhhcccccccCCCcEE-EcCCEEEECCEEEEEEEc
Confidence 5689999999999999999999874 5999999999899999999999999999999999 899999999999999999
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCC-eEEeecCccCCCC-CCCeEecCCcchhh
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKP-DEPIISNASCTTNC 224 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~p-tvV~gVN~~~y~~-~~~IISnaSCTTn~ 224 (416)
++|+++||+++|+||||||||.|+++++++.|+++||||||||+|++| +| |||||||++.|++ .++|||||||||||
T Consensus 78 ~dp~~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisaps~d-vp~~vV~gVN~~~~~~~~~~IISNasCTTn~ 156 (342)
T 2ep7_A 78 KDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAKN-PDITVVLGVNEEKYNPKEHNIISNASCTTNC 156 (342)
T ss_dssp SSGGGCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSCCBS-CSEECCTTTSGGGCCTTTCCEEECCCHHHHH
T ss_pred CChhhCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecCCCCC-CCceEEcCcCHHHhcccCCeEEECCChHHHH
Confidence 999999999999999999999999999999999999999999999985 89 9999999999997 57899999999999
Q ss_pred hHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccc
Q 014890 225 LAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPAL 304 (416)
Q Consensus 225 Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL 304 (416)
|+|++|+||++| ||++++|||||+||++|+++|.+|+||||+|++++||||++||++|+++||||+|
T Consensus 157 Lap~lk~L~d~f-------------GI~~~~mTTvha~T~~q~~~d~p~~d~r~~r~~a~NiIP~~tGaakav~kVlP~L 223 (342)
T 2ep7_A 157 LAPCVKVLNEAF-------------GVEKGYMVTVHAYTNDQRLLDLPHKDFRRARAAAINIVPTTTGAAKAIGEVIPEL 223 (342)
T ss_dssp HHHHHHHHHHHH-------------CEEEEEEEEEEECCTTSBSSSCCCSSTTTTSBGGGCCEEECCCTTGGGGGTSGGG
T ss_pred HHHHHHHHHHHc-------------CeeEEEEEEEeecccchhhhcCCcchhhhhhhHhhCccCCCCChHHHHHHhhhcc
Confidence 999999999999 9999999999999999999998899999999999999999999999999999999
Q ss_pred cCCeeeEEEeeCcccceEEEEEEEEcc-CCCHHHHHHHHHhcccc-------cCCCcccccCCCeeeeccCCCCcceeee
Q 014890 305 KGKLNGIALRVPTPNVSVVDLVVQVSK-KTFAEEVNAAFRESADN-------ELKGILSVCDEPLVSVDFRCSDVSSTVD 376 (416)
Q Consensus 305 ~gkl~g~avRVPt~~vs~vdl~v~l~k-~vs~eeV~~a~~~aa~~-------~lkgil~~~~~p~VS~Df~g~~~S~i~D 376 (416)
+|||+|+|+||||+++|++||+++|+| ++++|||+++|++++++ +|||||+|+|+|+||+||+|++||||||
T Consensus 224 ~gkltg~avRVPv~~~s~~dltv~lek~~~t~eei~~~lk~a~~~~~~~~~~~lkgil~y~~~~~vS~d~~~~~~ssi~d 303 (342)
T 2ep7_A 224 KGKLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNPHSAIFD 303 (342)
T ss_dssp TTTEEEEEEEESCSSCEEEEEEEEESSCCSCHHHHHHHHHHHHHHHHTSCCGGGTTSEEEECSCCCGGGGTTCCCSEEEE
T ss_pred CCCEEEEEEEecccceEEEEEEEEEcCCCCCHHHHHHHHHHHhcCCcccccccccccccccCCCeEeeeECCCCccceec
Confidence 999999999999999999999999999 99999999999999999 9999999999999999999999999999
Q ss_pred CCCCcccCCceEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 014890 377 SSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415 (416)
Q Consensus 377 ~~~t~v~~~~~vK~~~WyDNE~gys~R~vdl~~~~~~~~ 415 (416)
+.+|+++ ++++|+++||||||||||||+||+.||+++|
T Consensus 304 ~~~~~~~-~~~vk~~~wyDNE~gys~r~~dl~~~~~~~~ 341 (342)
T 2ep7_A 304 APLTQVI-DNLVHIAAWYDNEWGYSCRLRDLVIYLAERG 341 (342)
T ss_dssp GGGCEEE-TTEEEEEEEECTTHHHHHHHHHHHHHHHHC-
T ss_pred ccccccc-CCEEEEEEEECCCccchhHHHHHHHHHHhcc
Confidence 9999999 8899999999999999999999999998876
|
| >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-111 Score=837.87 Aligned_cols=328 Identities=53% Similarity=0.854 Sum_probs=319.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
+||||||||||||+++|+|+++ + |+||+|||+.++++++|||+|||+||+|+++++ .+++.|.++|+.|+++++++
T Consensus 1 ikVgInG~G~IGr~vlr~l~~~-~--~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~-~~~~~l~v~g~~i~v~~~~d 76 (331)
T 2g82_O 1 MKVGINGFGRIGRQVFRILHSR-G--VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVA-YDDQYLYVDGKAIRATAVKD 76 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-T--CCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEE-ECSSEEEETTEEEEEECCSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC-C--CEEEEEecCCCHHHHhHhhhccccCCCCCceEE-EcCCEEEECCEEEEEEecCC
Confidence 5899999999999999999987 3 999999999999999999999999999999999 88999999999999999999
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCC-CCCeEecCCcchhhhHH
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAP 227 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~-~~~IISnaSCTTn~Lap 227 (416)
|+++||++.|+|+||||||.|++++.+++|+++||||||||+|+++++|+||||||++.|++ .++||||||||||||+|
T Consensus 77 p~~l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps~d~~p~vV~gVN~~~~~~~~~~IIsnasCtTn~lap 156 (331)
T 2g82_O 77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAP 156 (331)
T ss_dssp GGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTTCCEEECCCHHHHHHHH
T ss_pred hhhCcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCCcCCCCEEeeccCHHHhCcCCCCEEECCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999866899999999999996 47899999999999999
Q ss_pred HHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccCC
Q 014890 228 FVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307 (416)
Q Consensus 228 ~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gk 307 (416)
++|+||++| ||+++.|||||+|||+|+++|.+|+||||+|++++||||++||++|++.||||+|+||
T Consensus 157 ~lk~L~~~f-------------gI~~~~mtTvha~Tg~q~~~d~~~~d~r~~r~~a~NiIP~~tGaakav~kIlp~L~gk 223 (331)
T 2g82_O 157 VMKVLEEAF-------------GVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGR 223 (331)
T ss_dssp HHHHHHHHT-------------CEEEEEEEEEEECCTTSBSSSCCCSSTTTTSBGGGCCEEECCCHHHHHTTTCGGGTTS
T ss_pred HHHHHHHhc-------------CccEEEEEEEeecccccchhccccccccccchhhhCccccCCCchhhhhhhHHhcCCC
Confidence 999999999 9999999999999999999998899999999999999999999999999999999999
Q ss_pred eeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCce
Q 014890 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDM 387 (416)
Q Consensus 308 l~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~~ 387 (416)
|+|+|+||||++||++||+++++|++++|||+++|+++++++|||||+|+|+|+||+||+|++||||||+.+|+++ +++
T Consensus 224 l~g~a~RVPv~~gs~~dl~v~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~~~~~-~~~ 302 (331)
T 2g82_O 224 FDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKAL-GNM 302 (331)
T ss_dssp EEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEEE-TTE
T ss_pred EEEEEEEeCCCCEEEEEEEEEECCCCCHHHHHHHHHHhhcCccCCccCCCCCCeeeeeeCCCCccceecchhcccc-CCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 789
Q ss_pred EEEEEEecCCcchhhhHhHHHHHHhhc
Q 014890 388 VKVIAWYDNEWGYSQRVVDLADIVANN 414 (416)
Q Consensus 388 vK~~~WyDNE~gys~R~vdl~~~~~~~ 414 (416)
+|+++||||||||||||+||+.+|+++
T Consensus 303 ~k~~~wydne~gys~r~~d~~~~~~~~ 329 (331)
T 2g82_O 303 VKVFAWYDNEWGYANRVADLVELVLRK 329 (331)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCchhHHHHHHHHHHHHhc
Confidence 999999999999999999999999875
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-110 Score=844.87 Aligned_cols=335 Identities=69% Similarity=1.070 Sum_probs=324.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++||||||||||||.++|+|+++..++++||+|||+.++++++|||+|||+||+|.++++ .+++.|.++|+.|.++++
T Consensus 1 M~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~-~~~~~l~v~g~~i~v~~~ 79 (380)
T 2d2i_A 1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS-YDENSITVNGKTMKIVCD 79 (380)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEE-EETTEEEETTEEEEEECC
T ss_pred CCcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEE-EeCCeEEECCeEEEEEec
Confidence 5689999999999999999999872245999999999999999999999999999999999 789999999999999999
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCC-eEEeecCccCCCCC-CCeEecCCcchhh
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPD-EPIISNASCTTNC 224 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~p-tvV~gVN~~~y~~~-~~IISnaSCTTn~ 224 (416)
+||++++|++.++||||||||.|.+++.++.|+++||||||||+|+++++| +||||||++.|++. ++|||||||||||
T Consensus 80 ~dp~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~ps~d~~p~~~V~GVN~e~~~~~~~~IVSNasCtTn~ 159 (380)
T 2d2i_A 80 RNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNC 159 (380)
T ss_dssp SCGGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSSCEECCTTTTGGGCCTTTCSEEECCCHHHHH
T ss_pred CChHHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEEcCCCCCCCCceEEcccCHHHhcccCCcEEECCchHHHH
Confidence 999999999899999999999999999999999999999999999986578 99999999999974 7899999999999
Q ss_pred hHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccc
Q 014890 225 LAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPAL 304 (416)
Q Consensus 225 Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL 304 (416)
|+|++|+||++| ||++++|||||+||++|+++|.+|+||||+|++++||||++||++|+++||||||
T Consensus 160 lap~lk~L~d~f-------------gI~~g~mTTvha~Tg~q~~vD~~~~d~r~gR~aa~NiIP~~Tgaakav~kvlPeL 226 (380)
T 2d2i_A 160 LAPVAKVLHDNF-------------GIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPEL 226 (380)
T ss_dssp HHHHHHHHHHHH-------------CEEEEEEEEEEECCTTSCSSSCCCSSTTTTSCGGGCCEEEECCHHHHHHHHCGGG
T ss_pred HHHHHHHHHHhc-------------CeeEEEEEEEeeccccchhhccchhhhhhcchHhhCeEeccCchHHHHHhhhHhh
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccC
Q 014890 305 KGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMG 384 (416)
Q Consensus 305 ~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~ 384 (416)
+|||+|+|+||||++||++||+++++|++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++
T Consensus 227 ~gkl~g~avRVPt~~gs~~dlt~~l~k~~t~eeI~~~lk~a~~~~lkgil~y~~~~~vS~d~~~~~~ssi~d~~~~~~~~ 306 (380)
T 2d2i_A 227 KGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMD 306 (380)
T ss_dssp TTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEEET
T ss_pred hCcEEEEEEEeccCCEEEEEEEEEECCcCCHHHHHHHHHHHhhCCCCCccCCcCCCeeeeeeCCCCcceEEecccCceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 014890 385 DDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415 (416)
Q Consensus 385 ~~~vK~~~WyDNE~gys~R~vdl~~~~~~~~ 415 (416)
++++|+++||||||||||||+||+.||+++|
T Consensus 307 ~~~vk~~~wyDNe~gys~r~~d~~~~~~~~~ 337 (380)
T 2d2i_A 307 GDLVKVIAWYDNEWGYSQRVVDLAELAARKS 337 (380)
T ss_dssp TTEEEEEEEECTTHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEECCCcchHhHHHHHHHHHHhhc
Confidence 9999999999999999999999999998874
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-109 Score=827.96 Aligned_cols=336 Identities=91% Similarity=1.376 Sum_probs=323.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||||||||||.++|+|++++.+++|||+|||+.++++++|||+|||+||+|.++++..+++.|.++|+.|.+++++
T Consensus 1 ~ikVgInG~G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~~ 80 (337)
T 1rm4_O 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR 80 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEecC
Confidence 47999999999999999999987334699999999999999999999999999999998744577899999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (416)
||.++||+++|+|+||||||.|.+++.++.|+++|||+|++|+|.++++|+||||||++.|++.++||||||||||||+|
T Consensus 81 dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSap~r~d~p~~V~GVN~~~~~~~~~IIsNasCtTn~lap 160 (337)
T 1rm4_O 81 NPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAP 160 (337)
T ss_dssp CGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSCCBCCTTTTGGGCCTTCSEEECCCHHHHHHHH
T ss_pred ChhhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEEECCcccCCCCeEeecCCHHHhCCCCeEEECCChHHHHHHH
Confidence 99999999899999999999999999999999999999999999986679999999999998768999999999999999
Q ss_pred HHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccCC
Q 014890 228 FVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307 (416)
Q Consensus 228 ~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gk 307 (416)
++|+||++| ||+++.|||||+|||+|+++|.+|+||||+|++++||||++||++|+++|++|||+||
T Consensus 161 ~lk~L~~~f-------------gI~~~~mtTvha~Tgaq~l~d~~~~~~r~~r~~a~NiiP~~tgaakav~kvlPel~gk 227 (337)
T 1rm4_O 161 FVKVLDQKF-------------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGK 227 (337)
T ss_dssp HHHHHHHHH-------------CEEEEEEEEEEECCTTSCSSSCCCSSTTTTSCTTTCCEEECCCHHHHHHHHCGGGTTT
T ss_pred HHHHHHHhc-------------CeeEEEEEEEEecCCccchhhcchhhhccchhhhcCcccccchhhHHHHhhhhhhcCc
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCce
Q 014890 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDM 387 (416)
Q Consensus 308 l~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~~ 387 (416)
|+|+|+||||++||++||+++++|++++|||+++|+++++|+|||||+|+|+|+||+||+|++||||||+.+|+++++++
T Consensus 228 l~~~a~RVP~~~gs~~dl~~~l~k~~t~eei~~~lk~a~~~~lkgil~y~~~~~vs~d~~~~~~s~i~d~~~~~~~~~~~ 307 (337)
T 1rm4_O 228 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDM 307 (337)
T ss_dssp EEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCSSEEEEGGGCEEETTTE
T ss_pred EEEEEEEecCCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCCcCceecCcCCCeeecccCCCCcccccchhccceecCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCcchhhhHhHHHHHHhhcCC
Q 014890 388 VKVIAWYDNEWGYSQRVVDLADIVANNWK 416 (416)
Q Consensus 388 vK~~~WyDNE~gys~R~vdl~~~~~~~~~ 416 (416)
+|+++||||||||||||+||+.+|+++|+
T Consensus 308 ~k~~~wydne~gys~r~~d~~~~~~~~~~ 336 (337)
T 1rm4_O 308 VKVIAWYDNEWGYSQRVVDLADIVANKWQ 336 (337)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHHHTCC
T ss_pred EEEEEEECCCccchhhHHHHHHHHhhhcc
Confidence 99999999999999999999999988753
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-109 Score=825.89 Aligned_cols=336 Identities=69% Similarity=1.090 Sum_probs=324.7
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++||||||||||||.++|+|+++..++||||+|||+.++++++|||+|||+||+|.++++ .+++.|.++|+.|.++++
T Consensus 1 M~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~-~~~~~l~v~g~~i~v~~~ 79 (339)
T 3b1j_A 1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS-YDENSITVNGKTMKIVCD 79 (339)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEE-EETTEEEETTEEEEEECC
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEE-EcCCeeeecCceEEEEec
Confidence 5689999999999999999999872245999999999999999999999999999999999 789999999999999999
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCC-eEEeecCccCCCCC-CCeEecCCcchhh
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPD-EPIISNASCTTNC 224 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~p-tvV~gVN~~~y~~~-~~IISnaSCTTn~ 224 (416)
+||++++|++.++|+||||||.|.+++.++.|+++|+||||||+|+++++| +||||||++.|++. ++|||||||||||
T Consensus 80 ~dp~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~~~~~~p~~~V~gVN~~~~~~~~~~IISnasCtTn~ 159 (339)
T 3b1j_A 80 RNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNC 159 (339)
T ss_dssp SCGGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSSCEECCTTTTGGGCCTTTCSEEECCCHHHHH
T ss_pred CChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEEeCCCCCCCCeeEEcccCHHHhCcCCCeEEECCcchhhH
Confidence 999999999999999999999999999999999999999999999986678 99999999999974 7899999999999
Q ss_pred hHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccc
Q 014890 225 LAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPAL 304 (416)
Q Consensus 225 Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL 304 (416)
|+|++|+||++| ||+++.|||||+||++|+++|.+|+||||+|++++||||++||+++++.+|+|+|
T Consensus 160 lap~lk~L~~~f-------------gI~~~~~tTvha~Tg~q~~vd~~~~d~r~~r~a~~NiiP~~tgaakav~kVlpeL 226 (339)
T 3b1j_A 160 LAPVAKVLHDNF-------------GIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPEL 226 (339)
T ss_dssp HHHHHHHHHHHT-------------CEEEEEEEEEEECCTTSCSSSCCCSSTTTTSCTTSCCEEEECSHHHHHHHHCGGG
T ss_pred HHHHHHHHHHhC-------------CeeEEEEEEEEeecCCchhcccchhhhhccccHHHceEcccCchHHHHHHHhHhh
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccC
Q 014890 305 KGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMG 384 (416)
Q Consensus 305 ~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~ 384 (416)
+|||+|+|+||||++||++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++
T Consensus 227 ~gkl~g~a~rVP~~~g~~~dl~v~l~k~~t~eeI~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~~~~~~ 306 (339)
T 3b1j_A 227 KGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMD 306 (339)
T ss_dssp TTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHSTTBTTEEEECSCCCGGGGTTCCSSEEEEGGGCEEET
T ss_pred cCcEEEEEEEeccCCEEEEEEEEEEcCcCCHHHHHHHHHHhhcCCCCCccCccCCceeehhcCCCCCceEEecccCceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEecCCcchhhhHhHHHHHHhhcCC
Q 014890 385 DDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416 (416)
Q Consensus 385 ~~~vK~~~WyDNE~gys~R~vdl~~~~~~~~~ 416 (416)
++++|+++||||||||||||+||+.+|+++|.
T Consensus 307 ~~~~k~~~wydne~gys~r~~d~~~~~~~~~~ 338 (339)
T 3b1j_A 307 GDLVKVIAWYDNEWGYSQRVVDLAELAARKWA 338 (339)
T ss_dssp TTEEEEEEEECTTHHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEEEeCCCcchHhHHHHHHHHHhhhcc
Confidence 99999999999999999999999999998763
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-107 Score=811.86 Aligned_cols=330 Identities=60% Similarity=0.940 Sum_probs=320.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
+||||||||||||.++|+|++++ +++||+|||..++++++|||+|||+||+|.++++ .+++.|.++|+.|.++++++
T Consensus 2 ikVgI~G~G~iGr~l~R~l~~~~--~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~-~~~~~l~v~g~~i~v~~~~d 78 (334)
T 3cmc_O 2 VKVGINGFGRIGRNVFRAALKNP--DIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVS-VNGNNLVVNGKEIIVKAERD 78 (334)
T ss_dssp EEEEEESCSHHHHHHHHHHTTCT--TEEEEEEECSSCHHHHHHHHHEETTTEECSSCEE-EETTEEEETTEEEEEECCSS
T ss_pred eEEEEECCCHHHHHHHHHHhCCC--CeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEE-EccCcEEECCEEEEEEecCC
Confidence 79999999999999999998874 5999999998899999999999999999999999 88999999999999998899
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCC-CCeEecCCcchhhhHH
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAP 227 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~-~~IISnaSCTTn~Lap 227 (416)
|+++||++.++|+||||||.|.+++.++.|+++||||||||+|+++++|++|||||++.|++. ++||||||||||||+|
T Consensus 79 p~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~pa~d~~p~~V~eVN~~~i~~~~~~IIsNpsCttn~lap 158 (334)
T 3cmc_O 79 PENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAP 158 (334)
T ss_dssp GGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTSGGGCCTTTCCEEECCCHHHHHHHH
T ss_pred hhhcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCCCccCCCEeccccCHHHhCccCCeEEECCChHHHHHHH
Confidence 999999999999999999999999999999999999999999998657999999999999863 7899999999999999
Q ss_pred HHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccCC
Q 014890 228 FVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307 (416)
Q Consensus 228 ~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gk 307 (416)
++|+||++| ||+++.|||||++||+|+++|.+|+|||++|++++||||++||++++++++||+|+||
T Consensus 159 ~lkpL~~~~-------------gI~~~~mtTvha~Sg~q~~~d~~~~~~r~~r~~a~NiiP~~tg~a~ei~kvlp~l~gk 225 (334)
T 3cmc_O 159 FAKVLHEQF-------------GIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGK 225 (334)
T ss_dssp HHHHHHHHH-------------CEEEEEEEEEEECCTTSBSSSCCCSSTTTTSBTTTCCEEEECSHHHHHHHHCGGGTTT
T ss_pred HHHHHHHhc-------------CceeeeEEEEEeccchhhhccccccccccchhhhhCEEeeccCcccchhhhChhhcCc
Confidence 999999999 9999999999999999999998899999999999999999999999999999999999
Q ss_pred eeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCce
Q 014890 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDM 387 (416)
Q Consensus 308 l~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~~ 387 (416)
|+++|+||||++||++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||||||+.+|+++++++
T Consensus 226 l~~~a~rVP~~~gs~~~l~~~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~ 305 (334)
T 3cmc_O 226 LNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKM 305 (334)
T ss_dssp EEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEEGGGCEEETTTE
T ss_pred EEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCccCCcccCCCCCEeeeeeCCCCccceeccccCeEecCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCcchhhhHhHHHHHHhhc
Q 014890 388 VKVIAWYDNEWGYSQRVVDLADIVANN 414 (416)
Q Consensus 388 vK~~~WyDNE~gys~R~vdl~~~~~~~ 414 (416)
+|+++||||||||||||+||+.+|+++
T Consensus 306 ~k~~~wydne~gys~r~~d~~~~~~~~ 332 (334)
T 3cmc_O 306 VKVVSWYDNETGYSHRVVDLAAYIASK 332 (334)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCCCchhhhHHHHHHHHHHhc
Confidence 999999999999999999999999875
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-106 Score=811.78 Aligned_cols=333 Identities=48% Similarity=0.789 Sum_probs=318.9
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
++++||||||||||||.++|+|++++ ++|||+||| ..++++++|||+|||+||+|++.++ .+++.|.++|+.|+++
T Consensus 15 ~~~ikVgI~G~G~iGr~llR~l~~~p--~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~-~~~~~l~v~g~~i~v~ 91 (354)
T 3cps_A 15 YFQGTLGINGFGRIGRLVLRACMERN--DITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVE-VSGKDLCINGKVVKVF 91 (354)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHTCS--SCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEE-ECC-CEEETTEEEEEE
T ss_pred CcceEEEEECCCHHHHHHHHHHHcCC--CeEEEEecCCCCChhHhhhhhcccccCCCCCCcEE-EeCCEEEECCeEEEEE
Confidence 34589999999999999999999874 599999999 8899999999999999999999998 8899999999999999
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCC-CCeEecCCcchh
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTN 223 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~-~~IISnaSCTTn 223 (416)
+++||+++||++.++|+||||||.|.+++.+++|+++||||||||+|+++++|++|||||++.|++. ++||||||||||
T Consensus 92 ~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~padd~~p~~V~GVN~~~~~~~~~~IISNpsCtTn 171 (354)
T 3cps_A 92 QAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTN 171 (354)
T ss_dssp CCSCGGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSSCCCBCCTTTTGGGCCTTTCSEEECCCHHHH
T ss_pred ecCChHHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCCCCCCCCEEEeccCHHHhCcCCCcEEECCCcHHH
Confidence 9999999999888999999999999999999999999999999999998668999999999999975 789999999999
Q ss_pred hhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccch---hHHHhhhccccccccCCCChHHHHHHH
Q 014890 224 CLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASH---RDLRRARAAALNIVPTSTGAAKAVALV 300 (416)
Q Consensus 224 ~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~---~d~rr~Raaa~NIIPt~tGaakav~kV 300 (416)
||+|++|+|+++| ||+++.|||||+||++|+++|.+| +|||++|++++||||++||++++++++
T Consensus 172 ~lap~lkpL~~~~-------------gI~~g~mtTvha~Tg~q~~vd~~~~~~k~~r~~r~aa~NiiP~~tG~akei~kv 238 (354)
T 3cps_A 172 CLAPLAKIINDKF-------------GIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKV 238 (354)
T ss_dssp HHHHHHHHHHHHT-------------CEEEEEEEEEEECCTTSCSSSCCCCC--CCGGGSCTTSCCEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------------CeeEEEEEEEecccccchhhhccchhccccccccchhccEEecCcCHHHHHHHH
Confidence 9999999999999 999999999999999999999888 899999999999999999999999999
Q ss_pred cccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCC
Q 014890 301 LPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLT 380 (416)
Q Consensus 301 lPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t 380 (416)
||+|+|||+++++||||++||++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||||||+.+|
T Consensus 239 lp~l~gkl~~~a~rVP~~~gs~~dl~~~l~k~~t~eeI~~~~k~a~~~~lkgil~y~~~~~vs~d~~~~~~s~~~d~~~~ 318 (354)
T 3cps_A 239 IPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNAC 318 (354)
T ss_dssp SGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGC
T ss_pred HHhcCCcEEEEEEEeccCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCCCCCccCccCCCeeeEEEcCCCcceEEecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceEEEEEEecCCcchhhhHhHHHHHHhhc
Q 014890 381 LVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 414 (416)
Q Consensus 381 ~v~~~~~vK~~~WyDNE~gys~R~vdl~~~~~~~ 414 (416)
++++++++|+++||||||||||||+||+.+|+++
T Consensus 319 ~~~~~~~~k~~~wydne~gys~r~~d~~~~~~~~ 352 (354)
T 3cps_A 319 IALNDSFVKLISWYDNESGYSNRLVDLAVYVASR 352 (354)
T ss_dssp EEEETTEEEEEEEECTTHHHHHHHHHHHHHHHHT
T ss_pred eEecCCEEEEEEEECCCcchHhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999865
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-105 Score=799.31 Aligned_cols=330 Identities=56% Similarity=0.879 Sum_probs=318.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
+||||||||||||+++|+|+++..+++|||+|||+.++++++|||+|||+||+|.++++ .+++.|.++|+.|.+++++|
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~-~~~~~l~v~g~~i~v~~~~d 79 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVE-YTENSLIVDGKEIKVFAEPD 79 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEE-ECSSEEEETTEEEEEECCSS
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEE-EcCCEEEECCeEEEEEecCC
Confidence 58999999999999999999872135999999998899999999999999999999999 88999999999999998899
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCC-eEEeecCccCCCCCCCeEecCCcchhhhHH
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~p-tvV~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (416)
|+++||++.++|+||||||.|.+++.+++|+++|+||||||+|+++ +| ++|||||++.|++.++||||||||||||+|
T Consensus 80 p~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId~~a~d-~p~~~V~eVN~~~i~~~~~iIsNpsCttn~lap 158 (332)
T 1hdg_O 80 PSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKG-EDITVVIGCNEDQLKPEHTIISCASCTTNSIAP 158 (332)
T ss_dssp GGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBS-CSEECCTTTTGGGCCTTCCEEECCCHHHHHHHH
T ss_pred hHHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEEeCCCCC-CCceEEeccCHHHhCCCCcEEECCccHHHHHHH
Confidence 9999999899999999999999999999999999999999999974 88 999999999998667899999999999999
Q ss_pred HHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccCC
Q 014890 228 FVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307 (416)
Q Consensus 228 ~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gk 307 (416)
++|+|+++| ||+++.|||||++||+|+.+|.+|+|||++|++++||||++||++++++++||+|+||
T Consensus 159 ~lkpL~~~~-------------gI~~~~~ttvha~Sg~q~~~d~~~~~~~~~r~~a~NiiP~~tg~a~ei~kvLp~l~gk 225 (332)
T 1hdg_O 159 IVKVLHEKF-------------GIVSGMLTTVHSYTNDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGK 225 (332)
T ss_dssp HHHHHHHHH-------------CEEEEEEEEEEECCTTSBSSSCCCSSTTTTSBGGGCCEEECCTHHHHHHHHCGGGTTT
T ss_pred HHHHHHHhc-------------CeeEeEEEEEEeccchhhhhcCcccccccchhHhhCcccccCCcccchhhhCccccCC
Confidence 999999999 9999999999999999999998899999999999999999999999999999999999
Q ss_pred eeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCce
Q 014890 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDM 387 (416)
Q Consensus 308 l~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~~ 387 (416)
|+++|+||||++||++|+++++++++++|||+++|+++++++|||||+|+|+|+||+||+||+||||||+.+|+++++++
T Consensus 226 l~~~a~rVP~~~g~l~~l~~~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~ 305 (332)
T 1hdg_O 226 LDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITNVIGGKL 305 (332)
T ss_dssp EEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCCSEEEETTTCEEETTTE
T ss_pred EEEEeEEccccCcEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCcccccCCCeeeeeeCCCCccceeccccCeEecCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCcchhhhHhHHHHHHhh
Q 014890 388 VKVIAWYDNEWGYSQRVVDLADIVAN 413 (416)
Q Consensus 388 vK~~~WyDNE~gys~R~vdl~~~~~~ 413 (416)
+|+++||||||||||||+||+.+|++
T Consensus 306 ~k~~~wydne~gys~r~~d~~~~~~~ 331 (332)
T 1hdg_O 306 VKVASWYDNEYGYSNRVVDTLELLLK 331 (332)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHGGG
T ss_pred EEEEEEeCCCccchhHHHHHHHHHhc
Confidence 99999999999999999999999864
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-105 Score=797.30 Aligned_cols=328 Identities=48% Similarity=0.809 Sum_probs=318.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||||||||||+++|++++++ +++||+||+..++++++|||+|||+||+|++.++ .+++.|.++|++|++++++
T Consensus 1 ~ikVgI~G~G~iG~~l~R~l~~~~--~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~-~~~~~l~v~g~~i~v~~~~ 77 (330)
T 1gad_O 1 TIKVGINGFGRIGRIVFRAAQKRS--DIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAER 77 (330)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCS--SEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEE-EETTEEEETTEEEEEECCS
T ss_pred CeEEEEECcCHHHHHHHHHHHcCC--CeEEEEEcCCCChhHHhHhhcccccCCCCCCeEE-EcCCEEEECCEEEEEEEcC
Confidence 379999999999999999999875 5999999998899999999999999999999999 7899999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (416)
||+++||++.++|+||||||.|.+++.++.|+++|+|+|++|+|.+++.|++|||||++.|+ .++||||||||||||+|
T Consensus 78 dp~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~~~~~p~~V~GvN~~~~~-~~~iIsNpsCtt~~lap 156 (330)
T 1gad_O 78 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYA-GQDIVSNASCTTNCLAP 156 (330)
T ss_dssp SGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCC-SCSEEECCCHHHHHHHH
T ss_pred ChhhCccccccCCEEEECCCccccHHHHHHHHHCCCEEEEECCCCCCCCCeEeecCCHHHhC-CCCEEEcCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999976689999999999998 57899999999999999
Q ss_pred HHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccch-hHHHhhhccccccccCCCChHHHHHHHcccccC
Q 014890 228 FVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306 (416)
Q Consensus 228 ~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~-~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~g 306 (416)
++|+||++| ||+++.|||||++||+|+++|.+| +|+|++|++++||||+++|+++++.++||+|+|
T Consensus 157 ~lkpL~~~~-------------gI~~~~~ttvha~Tg~q~~vd~~~~~~~~~~r~~~~NiiP~~tg~a~ei~kvlpel~g 223 (330)
T 1gad_O 157 LAKVINDNF-------------GIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNG 223 (330)
T ss_dssp HHHHHHHHH-------------CEEEEEEEEEECCCTTSBSSSCCCSSCGGGGSBTTTCCEEEECCTTTTHHHHSGGGTT
T ss_pred HHHHHHHhc-------------CeeEEEEEEEEecccccccccccccCCCccccchhhCeEEcCCCcchhHHHHHHHhcC
Confidence 999999999 999999999999999999999887 799999999999999999999999999999999
Q ss_pred CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCc
Q 014890 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDD 386 (416)
Q Consensus 307 kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~ 386 (416)
||+++|+||||++||++|+++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||||||+.+|++++++
T Consensus 224 kl~~~a~rVP~~~g~~~~l~~~l~k~~t~eei~~~~k~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~ 303 (330)
T 1gad_O 224 KLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDN 303 (330)
T ss_dssp SEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEETTTCEEEETT
T ss_pred cEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhcCCCCCEEeeECCceeeeeECCCCcceEEecccCeEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred eEEEEEEecCCcchhhhHhHHHHHHh
Q 014890 387 MVKVIAWYDNEWGYSQRVVDLADIVA 412 (416)
Q Consensus 387 ~vK~~~WyDNE~gys~R~vdl~~~~~ 412 (416)
++|+++||||||||||||+||+.+|+
T Consensus 304 ~~k~~~wydne~gys~r~~d~~~~~~ 329 (330)
T 1gad_O 304 FVKLVSWYDNETGYSNKVLDLIAHIS 329 (330)
T ss_dssp EEEEEEEECTTHHHHHHHHHHHHHTT
T ss_pred EEEEEEEECCCchhhhHHHHHHHHhc
Confidence 99999999999999999999999985
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-105 Score=799.43 Aligned_cols=332 Identities=44% Similarity=0.728 Sum_probs=309.6
Q ss_pred cceeEEEEccChhHHHHHHHHHh---CCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHG---RKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~---~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
|++||||||||||||.++|+|++ ++ +++||+|||..++++++|||+|||+||+|.++++ ++++.|.++|+.|++
T Consensus 1 M~ikVgI~G~G~iGr~l~r~l~~~~~~~--~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~-~~~~~l~v~g~~i~v 77 (339)
T 2x5j_O 1 MTVRVAINGFGRIGRNVVRALYESGRRA--EITVVAINELADAAGMAHLLKYDTSHGRFAWEVR-QERDQLFVGDDAIRV 77 (339)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTSGGG--TEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEE-EETTEEEETTEEEEE
T ss_pred CCeEEEEECcCHHHHHHHHHHHcCCCCC--CEEEEEEeCCCCHHHHHHHhcccccCCCCCceEE-EcCCeeEECCEEEEE
Confidence 56899999999999999999998 64 4999999998899999999999999999999999 899999999999999
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCC-eEEeecCccCCCCCCCeEecCCcch
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTT 222 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~p-tvV~gVN~~~y~~~~~IISnaSCTT 222 (416)
++++||++++|++.++|+||||||.|.+++.++.|+++|+||||||+|+..++| ++|||||++.|+++++|||||||||
T Consensus 78 ~~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~ad~d~p~~~V~gvN~~~~~~~~~iIsnpsCtt 157 (339)
T 2x5j_O 78 LHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTT 157 (339)
T ss_dssp ECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCCTTSSEECCTTTSGGGCCTTCCEEECCCHHH
T ss_pred EecCChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccccCCCCceeecccCHHHhcCCCCEEECCCcHH
Confidence 999999999999889999999999999999999999999999999999833578 9999999999987578999999999
Q ss_pred hhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcc
Q 014890 223 NCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLP 302 (416)
Q Consensus 223 n~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlP 302 (416)
|||+|++|+||++| ||+++.|||||+|||+|+++|.+|+||||+|++++||||++||+++++.++||
T Consensus 158 n~lap~lkpL~~~~-------------gI~~~~~ttvha~Tg~q~~~d~~~~d~r~~r~a~~NiiP~~tg~a~ei~kvlp 224 (339)
T 2x5j_O 158 NCIIPVIKLLDDAY-------------GIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRFFP 224 (339)
T ss_dssp HHHHHHHHHHHHHH-------------CEEEEEEEEEECCC-----------CTTTTSCCCCCCEEECCCHHHHHHHHSG
T ss_pred HHHHHHHHHHHHcc-------------CcceeeEEEEEeccccccccccccccccchhhHHhCcccccCChHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcc
Q 014890 303 ALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLV 382 (416)
Q Consensus 303 eL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v 382 (416)
+|+|||+++|+||||++||++|+++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++
T Consensus 225 ~l~gkl~~~a~rVP~~~g~~~~l~v~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~~~~ 304 (339)
T 2x5j_O 225 QFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRV 304 (339)
T ss_dssp GGTTSEEEEEEECSSCSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEEEEEEEE
T ss_pred HhcCcEEEEEEEecccCcEEEEEEEEECCCCCHHHHHHHHHHHhhcCCCcEEcccCCcccccccCCCCCceEEEccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEecCCcchhhhHhHHHHHHhhc
Q 014890 383 MGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 414 (416)
Q Consensus 383 ~~~~~vK~~~WyDNE~gys~R~vdl~~~~~~~ 414 (416)
++++++|+++||||||||||||+||+.+|+++
T Consensus 305 ~~~~~~k~~~wydne~gys~r~~d~~~~~~~~ 336 (339)
T 2x5j_O 305 SGAHLIKTLVWCDNEWGFANRMLDTTLAMATV 336 (339)
T ss_dssp ETTTEEEEEEEECHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCEEEEEEEeCCCcccHhHHHHHHHHHhhh
Confidence 99999999999999999999999999999764
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-104 Score=794.70 Aligned_cols=331 Identities=46% Similarity=0.793 Sum_probs=319.3
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCC-Cceeee-cCCeEEECCEEEEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFE-ADVKPV-GTDGISVDGKVIQV 143 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~-~~v~~~-~~~~i~v~G~~I~v 143 (416)
|++||||||||||||.++|++.+++ +++||+||| ..++++++|||||||+||+|+ +.++ . +++.|.++|+.|.+
T Consensus 2 m~ikVgI~G~GrIGr~l~R~l~~~p--~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~-~~~~~~l~~~g~~i~v 78 (337)
T 3e5r_O 2 GKIKIGINGFGRIGRLVARVALQSE--DVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIK-IKDSKTLLLGEKPVTV 78 (337)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCS--SEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEE-ESSSSEEEETTEEEEE
T ss_pred CceEEEEECcCHHHHHHHHHHhCCC--CeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEE-eecCCeeEECCeEEEE
Confidence 5689999999999999999999874 599999999 589999999999999999999 9988 6 88999999999999
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchh
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTN 223 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn 223 (416)
++++||+++||++.++|+||||||.|.+++.++.|+++|+||||||+|+++ .|++|||||++.|++.++||||||||||
T Consensus 79 ~~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa~d-~p~~V~gvN~~~~~~~~~iIsnpsCtt~ 157 (337)
T 3e5r_O 79 FGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKD-APMFVCGVNEDKYTSDIDIVSNASCTTN 157 (337)
T ss_dssp ECCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSS-SCBCCTTTTGGGCCTTCCEEECCCHHHH
T ss_pred EecCChHHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCCCC-CCEEEeccCHHHhCCCCcEEECCChHHH
Confidence 999999999999889999999999999999999999999999999999974 8999999999999876789999999999
Q ss_pred hhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccch-hHHHhhhccccccccCCCChHHHHHHHcc
Q 014890 224 CLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVALVLP 302 (416)
Q Consensus 224 ~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~-~d~rr~Raaa~NIIPt~tGaakav~kVlP 302 (416)
||+|++|+|+++| ||+++.|||+|++||+|+++|.+| +|||++|++++||||++||++++++++||
T Consensus 158 ~la~~lkpL~~~~-------------gI~~~~~ttvha~Tg~q~~vd~~~~~~~~~~r~~~~NiiP~~tg~a~ei~kvlp 224 (337)
T 3e5r_O 158 CLAPLAKVIHDNF-------------GIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLP 224 (337)
T ss_dssp HHHHHHHHHHHHH-------------CEEEEEEEEEEECCTTSBSSSCCCTTCSGGGSBGGGSCEEEECCHHHHHHHHSG
T ss_pred HHHHHHHHHHHhc-------------CccccceeEEEeeccccccccccccccccccccHhhCccccCCCchHHHHHHHH
Confidence 9999999999999 999999999999999999999887 69999999999999999999999999999
Q ss_pred cccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcc
Q 014890 303 ALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLV 382 (416)
Q Consensus 303 eL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v 382 (416)
+|+|||+++++||||++||++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+||+||+|||+.+|++
T Consensus 225 el~gkl~~~a~rVP~~~g~~~~l~~~l~k~~t~eei~~~~~~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~~~~ 304 (337)
T 3e5r_O 225 DLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIA 304 (337)
T ss_dssp GGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEETTTCEE
T ss_pred HhCCcEEEEEEEeccCCeEEEEEEEEECCCccHHHHHHHHHHHhhCCCCCcccCCCCCeeeeeecCCCCceEEecccCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEecCCcchhhhHhHHHHHHhhc
Q 014890 383 MGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 414 (416)
Q Consensus 383 ~~~~~vK~~~WyDNE~gys~R~vdl~~~~~~~ 414 (416)
++++++|+++||||||||||||+||+.+|+++
T Consensus 305 ~~~~~~k~~~wydne~gys~r~~~~~~~~~~~ 336 (337)
T 3e5r_O 305 LNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKT 336 (337)
T ss_dssp EETTEEEEEEEECTTHHHHHHHHHHHHHHHHC
T ss_pred ecCCEEEEEEEeCCCcchHhHHHHHHHHHhcc
Confidence 98899999999999999999999999999764
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-104 Score=788.62 Aligned_cols=331 Identities=45% Similarity=0.761 Sum_probs=319.6
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
|++||||||||||||.++|++.+++ +++||+||| ..++++++||++|||+||+|.+.++ ++++.|.++|+.|++++
T Consensus 2 M~ikVgI~G~G~iGr~~~R~l~~~~--~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~-~~~~~l~v~g~~i~v~~ 78 (335)
T 1u8f_O 2 GKVKVGVNGFGRIGRLVTRAAFNSG--KVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVK-AENGKLVINGNPITIFQ 78 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHC--SSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEE-EETTEEEETTEEEEEEC
T ss_pred CceEEEEEccCHHHHHHHHHHHcCC--CcEEEEecCCCCCHHHHHHHhhcccccCCCCCceE-EcCCeEEECCeEEEEEe
Confidence 5689999999999999999998864 499999999 4899999999999999999999999 88999999999999999
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhh
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 225 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~L 225 (416)
++||+++||++.++|+||||||.|.+++.+++|+++|+|+|++|+|+++ .|++|||||++.|++.++||||||||||||
T Consensus 79 ~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap~~~-~p~~V~gvN~~~~~~~~~iIsnpsCtt~~l 157 (335)
T 1u8f_O 79 ERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSAD-APMFVMGVNHEKYDNSLKIISNASCTTNCL 157 (335)
T ss_dssp CSSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCSS-SCBCCTTTTGGGCCTTCSEEECCCHHHHHH
T ss_pred cCCHHHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccCCCC-CCeEEeccCHHHhCCCCCEEECCChHHHHH
Confidence 9999999999999999999999999999999999999999999999764 899999999999986678999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccch-hHHHhhhccccccccCCCChHHHHHHHcccc
Q 014890 226 APFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVALVLPAL 304 (416)
Q Consensus 226 ap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~-~d~rr~Raaa~NIIPt~tGaakav~kVlPeL 304 (416)
+|++|||+++| ||+++.|||+|++||+|+.+|.+| +|||++|++++||||++||++++++++||||
T Consensus 158 ~~~lkpL~~~~-------------gI~~~~~tt~~a~Tg~q~~vd~~~~~~~~~~r~~~~NiiP~~tg~a~ei~kvlpel 224 (335)
T 1u8f_O 158 APLAKVIHDNF-------------GIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPEL 224 (335)
T ss_dssp HHHHHHHHHHH-------------CEEEEEEEEEEECCTTSBSSSCCCTTCGGGGSBTTTCCEEEECCTTTTHHHHSGGG
T ss_pred HHHHHHHHHhC-------------CcceeEEEEEeccccCccccccccccccccchhhhcCceeccCChhHHHHHHHHHh
Confidence 99999999999 999999999999999999999888 8999999999999999999999999999999
Q ss_pred cCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccC
Q 014890 305 KGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMG 384 (416)
Q Consensus 305 ~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~ 384 (416)
+|||+++++||||++||++|+++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++
T Consensus 225 ~gkl~~~a~rVP~~~g~~~~l~~~l~~~~t~eei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~ 304 (335)
T 1u8f_O 225 NGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALN 304 (335)
T ss_dssp TTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEETTTCEEEE
T ss_pred CCcEEEEEEEeccCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCccCcEEcccCCCcceeeecCCCCceEEeCCCCEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceEEEEEEecCCcchhhhHhHHHHHHhhc
Q 014890 385 DDMVKVIAWYDNEWGYSQRVVDLADIVANN 414 (416)
Q Consensus 385 ~~~vK~~~WyDNE~gys~R~vdl~~~~~~~ 414 (416)
++++|+++||||||||||||+||+.+|+++
T Consensus 305 ~~~~k~~~wydne~gy~~r~~~~~~~~~~~ 334 (335)
T 1u8f_O 305 DHFVKLISWYDNEFGYSNRVVDLMAHMASK 334 (335)
T ss_dssp TTEEEEEEEECTTHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEEcCcchhHhHHHHHHHHHhcc
Confidence 899999999999999999999999999764
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-62 Score=487.98 Aligned_cols=241 Identities=18% Similarity=0.258 Sum_probs=219.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccc--cccccC--CCce-eeecCCeEEECCEEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYD--STLGIF--EADV-KPVGTDGISVDGKVI 141 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyD--S~~G~f--~~~v-~~~~~~~i~v~G~~I 141 (416)
|++||||||||||||.++|++.+++ +++||+|||+ ++++++|||+|| ++||+| ++.+ + .+++.+.++|.
T Consensus 1 MmikVgI~G~G~IGr~v~r~l~~~~--~~evvaV~d~-~~~~~~~l~~~dg~s~~g~~~~~~~v~~-~~~~~l~v~~~-- 74 (343)
T 2yyy_A 1 MPAKVLINGYGSIGKRVADAVSMQD--DMEVIGVTKT-KPDFEARLAVEKGYKLFVAIPDNERVKL-FEDAGIPVEGT-- 74 (343)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHSS--SEEEEEEEES-SCSHHHHHHHHTTCCEEESSCCHHHHHH-HHHTTCCCCCB--
T ss_pred CceEEEEECCCHHHHHHHHHHHhCC--CceEEEEecC-CHHHHHHHHHhcCCccccccCCCceeec-ccCCeEEECCc--
Confidence 5589999999999999999998874 4999999998 599999999999 999999 5666 5 56677777763
Q ss_pred EEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHH-HHHHcCCCEEEEcCCCCCC-CC-eEEeecCccCCCCCCCeEecC
Q 014890 142 QVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAG-KHIQAGAKKVLITAPGKGD-IP-TYVVGVNADAYKPDEPIISNA 218 (416)
Q Consensus 142 ~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~-~hl~aGAkkVIIsapskd~-~p-tvV~gVN~~~y~~~~~IISna 218 (416)
+.++.| ++|+|+||||.+.+++.++ .|+++| ++||+++|++++ +| +||||||++.|++ ++|||||
T Consensus 75 -------~~~~~~---~vDiV~eatg~~~s~~~a~~~~l~aG-~~VI~sap~~~d~vp~~vV~gvN~~~~~~-~~iIsn~ 142 (343)
T 2yyy_A 75 -------ILDIIE---DADIVVDGAPKKIGKQNLENIYKPHK-VKAILQGGEKAKDVEDNFNALWSYNRCYG-KDYVRVV 142 (343)
T ss_dssp -------GGGTGG---GCSEEEECCCTTHHHHHHHHTTTTTT-CEEEECTTSCGGGSSEEECTTTTHHHHTT-CSEEEEC
T ss_pred -------hHHhcc---CCCEEEECCCccccHHHHHHHHHHCC-CEEEECCCccccCCCceEEcccCHHHhcc-CCEEecc
Confidence 445556 8999999999999999996 999999 679999999755 78 9999999999985 7899999
Q ss_pred CcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccC----CCChH
Q 014890 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPT----STGAA 294 (416)
Q Consensus 219 SCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt----~tGaa 294 (416)
|||||||+|++|+||++| ||+++.|||||++|+. + |++|++++||||+ ++|++
T Consensus 143 sCtT~~lap~lk~L~~~f-------------gI~~~~vtT~~a~sg~-------~---~~~r~~~~NiiP~~i~~~tg~~ 199 (343)
T 2yyy_A 143 SCNTTGLCRILYAINSIA-------------DIKKARIVLVRRAADP-------N---DDKTGPVNAITPNPVTVPSHHG 199 (343)
T ss_dssp CHHHHHHHHHHHHHHTTS-------------EEEEEEEEEEEESSCT-------T---CSSCCCSSCCEESSSSSSCTHH
T ss_pred chhhHHHHHHHHHHHHHc-------------CceEEEEEeeeeccCc-------C---cchhhHHhcccCCCCCCCCcch
Confidence 999999999999999999 9999999999999992 2 5678999999999 99999
Q ss_pred HHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccc
Q 014890 295 KAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN 348 (416)
Q Consensus 295 kav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~ 348 (416)
|+++||||+|+|||+|+|+||||+++|++||+++|++++++|||+++|++++..
T Consensus 200 k~~~kilp~l~gkl~~~avRVPv~~gh~~~l~v~l~~~~t~eei~~~l~~a~~v 253 (343)
T 2yyy_A 200 PDVVSVVPEFEGKILTSAVIVPTTLMHMHTLMVEVDGDVSRDDILEAIKKTPRI 253 (343)
T ss_dssp HHHHHHCGGGTTSEEEEEEEESCSSCEEEEEEEEEESCCCHHHHHHHHHHSTTE
T ss_pred HHHHHhhhccccceeeEEEEecccceEEEEEEEEECCCCCHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999999764
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-49 Score=394.93 Aligned_cols=302 Identities=17% Similarity=0.159 Sum_probs=239.9
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
|++||+|+| ||+|||.++|.|+++..+.++++++|+.. ..+..+.++|+.+.+..
T Consensus 5 m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~------------------------~~g~~~~~~g~~i~~~~ 60 (340)
T 2hjs_A 5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAE------------------------SAGQRMGFAESSLRVGD 60 (340)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTT------------------------TTTCEEEETTEEEECEE
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCC------------------------CCCCccccCCcceEEec
Confidence 458999999 99999999999997654569999999631 11233447777777753
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCC-CCCeEEeecCccCCCCCC--CeEecCCcch
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPDE--PIISNASCTT 222 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd-~~ptvV~gVN~~~y~~~~--~IISnaSCTT 222 (416)
.+|.. |. ++|+||+|+|.+.+++.++.|+++|+|+|.+|++..| +.|++|+|||++.|+..+ +|||||||||
T Consensus 61 -~~~~~--~~--~~DvV~~a~g~~~s~~~a~~~~~aG~kvId~Sa~~rd~~~~~~vpevN~~~i~~~~~~~iIanp~C~t 135 (340)
T 2hjs_A 61 -VDSFD--FS--SVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPSVAPPVMVSVNAERLASQAAPFLLSSPCAVA 135 (340)
T ss_dssp -GGGCC--GG--GCSEEEECSCHHHHHHHHHHHHHTTCEEEETTCTTTTTTSCBCCHHHHGGGGGGSCSSCEEECCCHHH
T ss_pred -CCHHH--hc--CCCEEEEcCCcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCeEEcCcCHHHHhcCcCCCEEEcCCHHH
Confidence 35543 74 8999999999999999999999999987777887653 479999999999998642 7999999999
Q ss_pred hhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchh-hhccch---hHHHhh---------hccccccccC
Q 014890 223 NCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQR-LLDASH---RDLRRA---------RAAALNIVPT 289 (416)
Q Consensus 223 n~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~-~lD~~~---~d~rr~---------Raaa~NIIPt 289 (416)
|||+|++++|+++| ||++++|||+|+|||+|+ .+|..+ +|||++ |++++||||+
T Consensus 136 t~~~~~l~pL~~~~-------------~i~~~~v~t~~~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~niip~ 202 (340)
T 2hjs_A 136 AELCEVLAPLLATL-------------DCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQ 202 (340)
T ss_dssp HHHHHHHHHHTTTC-------------CEEEEEEEEEECGGGGCHHHHHHHHHHHHHHHTTCCCCCSSSSSCCTTCCBSS
T ss_pred HHHHHHHHHHHHhc-------------CcceEEEEEecccCCCCccccHhHHHHHHHHhccCCccccccchhhccCeecc
Confidence 99999999999999 999999999999999985 588766 789985 6789999999
Q ss_pred CC-----C-------hHHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCccccc
Q 014890 290 ST-----G-------AAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 357 (416)
Q Consensus 290 ~t-----G-------aakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~ 357 (416)
++ | ..+++.|++|++++|++++|+|||+++||++++++++++++++|||+++|++++. =-++...
T Consensus 203 ~~~~~~~gh~~Ee~k~~~~~~kil~~~~~~v~~~~~rVP~~~g~~~~~~~~l~~~~t~eei~~~~~~~~~---V~v~~~~ 279 (340)
T 2hjs_A 203 VGAVDAEGHSAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKG---IEWVGEG 279 (340)
T ss_dssp SSCBCTTSCBHHHHHHHHHHHHHTGGGBCCEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHSTT---EEECCTT
T ss_pred ccCcccCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEcCcCceEEEEEEEEECCCCCHHHHHHHHhcCCC---cEEeCCC
Confidence 87 7 4455678899999999999999999999999999999999999999999997542 1222211
Q ss_pred CCCeeeeccCCCCcceeeeCCCCcccCCceEEEEEEecC-CcchhhhHhHHHHHHhhc
Q 014890 358 DEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDN-EWGYSQRVVDLADIVANN 414 (416)
Q Consensus 358 ~~p~VS~Df~g~~~S~i~D~~~t~v~~~~~vK~~~WyDN-E~gys~R~vdl~~~~~~~ 414 (416)
+-|-...|..|..+-.|--...... .++.+.+.+|.|| .+|.|-.-|-.+++|.++
T Consensus 280 ~~p~~~~~v~g~~~~~vgr~r~~~~-~~~~l~~~~~~DNl~kGAA~~avq~~~l~~~~ 336 (340)
T 2hjs_A 280 DYPTVVGDALGQDETYVGRVRAGQA-DPCQVNLWIVSDNVRKGAALNAVLLGELLIKH 336 (340)
T ss_dssp CCCCCCCCCTTSSCEEEEEEEECSS-CTTEEEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCccHHHcCCCCEEEEEEEEecCC-CCCEEEEEEEechHHHHHHHHHHHHHHHHHHh
Confidence 1232211555554433322111111 3457889999999 999999999999887653
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=395.81 Aligned_cols=291 Identities=21% Similarity=0.288 Sum_probs=232.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
||||||| ||+|||.++|.|+++. ++++.++ ++. | .+ .+++.+.++|+.+.++..
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~---~~~~~l~----------~~~--s--------~~-~~g~~l~~~g~~i~v~~~- 55 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARN---FPLSELR----------LYA--S--------PR-SAGVRLAFRGEEIPVEPL- 55 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTT---CCCSCCE----------EEE--C--------GG-GSSCEEEETTEEEEEEEC-
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CCcEEEE----------Eee--c--------cc-cCCCEEEEcCceEEEEeC-
Confidence 5899999 9999999999999764 3432222 221 1 12 467788899999999876
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCC----CCCCeEEeecCccCCCCCCCeEecCCcchh
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKPDEPIISNASCTTN 223 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapsk----d~~ptvV~gVN~~~y~~~~~IISnaSCTTn 223 (416)
+|. +| ++|+||+|||.|.+++.++.|+++|+ ++|+.++. ++.|++|||||++.|++.++||||||||||
T Consensus 56 ~~~--~~---~~DvV~~a~g~~~s~~~a~~~~~~G~--~vId~s~~~R~~~~~~~~vpevN~~~i~~~~~iIanp~C~tt 128 (331)
T 2yv3_A 56 PEG--PL---PVDLVLASAGGGISRAKALVWAEGGA--LVVDNSSAWRYEPWVPLVVPEVNREKIFQHRGIIANPNCTTA 128 (331)
T ss_dssp CSS--CC---CCSEEEECSHHHHHHHHHHHHHHTTC--EEEECSSSSTTCTTSCBCCTTSCGGGGGGCSSEEECCCHHHH
T ss_pred Chh--hc---CCCEEEECCCccchHHHHHHHHHCCC--EEEECCCccccCCCCCEEEcCcCHHHhcCCCCEEECCCHHHH
Confidence 565 58 89999999999999999999999999 45666653 368999999999999865679999999999
Q ss_pred hhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc------------hhhhccc-hhHHHhhhccccccccCC
Q 014890 224 CLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD------------QRLLDAS-HRDLRRARAAALNIVPTS 290 (416)
Q Consensus 224 ~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~------------Q~~lD~~-~~d~rr~Raaa~NIIPt~ 290 (416)
||+|++++|+++| ||++++|||||+|||+ |+++|.. ++|+|++|++++||+|++
T Consensus 129 ~~~~~l~pL~~~~-------------~I~~~~vtt~~~~SgaG~~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiP~~ 195 (331)
T 2yv3_A 129 ILAMALWPLHRAF-------------QAKRVIVATYQAASGAGAKAMEELLTETHRFLHGEAPKAEAFAHPLPFNVIPHI 195 (331)
T ss_dssp HHHHHHHHHHHHH-------------CEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHHTSSCCCCCSSSSCCTTCCBSCC
T ss_pred HHHHHHHHHHHhC-------------CceEEEEEEEeecccCCcchhHHHHHHHHhhhcCccccccccchhhhcCccccc
Confidence 9999999999999 9999999999999999 8888854 478999999999999998
Q ss_pred --------CChHHHH----HHHc--ccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccc
Q 014890 291 --------TGAAKAV----ALVL--PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSV 356 (416)
Q Consensus 291 --------tGaakav----~kVl--PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~ 356 (416)
|+.++++ .+++ |+|+ ++++++|||+++||++++++++++++++|||+++|++++. +.+
T Consensus 196 ~~~~~~~ht~e~~~i~~e~~kil~~~~l~--v~~~~~rVP~~~g~~~~~~~~l~~~~t~eei~~~~~~~~~------v~v 267 (331)
T 2yv3_A 196 DAFQENGYTREEMKVVWETHKIFGDDTIR--ISATAVRVPTLRAHAEAVSVEFARPVTPEAAREVLKEAPG------VEV 267 (331)
T ss_dssp SCBCTTSCBHHHHHHHHHHHHHTTCTTCE--EEEECCBCSCSSEEEEEEEEEESSCCCHHHHHHHHTTSTT------CCB
T ss_pred CccccCCCcHHHHHHHHHHHHHhCCCCce--EEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHcCCC------eEE
Confidence 7777777 8998 9995 9999999999999999999999999999999999998542 222
Q ss_pred cCCC-----eeeeccCCCCcceeeeCCCCcccCCceEEEEEEecCC-cchhhhHhHHHHHHhh
Q 014890 357 CDEP-----LVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE-WGYSQRVVDLADIVAN 413 (416)
Q Consensus 357 ~~~p-----~VS~Df~g~~~S~i~D~~~t~v~~~~~vK~~~WyDNE-~gys~R~vdl~~~~~~ 413 (416)
.++| .-..+..|..+-.|--..... ..++.+.+++|.||- +|.|-.-|-.+++|.+
T Consensus 268 ~~~~~~~~~p~~~~~~g~~~~~igr~~~d~-~~~~~l~~~~~~DNl~kGAAg~AVq~~nl~~~ 329 (331)
T 2yv3_A 268 VDEPEAKRYPMPLTASGKWDVEVGRIRKSL-AFENGLDFFVVGDQLLKGAALNAVQIAEEWLK 329 (331)
T ss_dssp CCBTTTTBCCCHHHHTTCSSEEEEEEEECS-SSTTEEEEEEEEETTHHHHTTHHHHHHHHHC-
T ss_pred EeCCCcCCCCChhhccCCceEEEEEEEECC-CCCCEEEEEEEechHHHHHHHHHHHHHHHHhh
Confidence 2221 111245555444332111000 124568899999999 8999999988888754
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-50 Score=400.05 Aligned_cols=274 Identities=18% Similarity=0.242 Sum_probs=221.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccc--cccccCCCce-eeecCCeEEECCEEEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYD--STLGIFEADV-KPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyD--S~~G~f~~~v-~~~~~~~i~v~G~~I~v~ 144 (416)
++||||||+|+|||.++|++.+.+ ++++++|||. .++..+++++|| ++||.|++.+ . +++..+.+++.
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~~--~~elvav~d~-~~~~~~~~~~~~g~~~~~~~~~~v~~-~~~~~l~v~~~----- 71 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQD--DMKVIGVSKT-RPDFEARMALKKGYDLYVAIPERVKL-FEKAGIEVAGT----- 71 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSS--SEEEEEEEES-SCSHHHHHHHHTTCCEEESSGGGHHH-HHHTTCCCCEE-----
T ss_pred CeEEEEEeECHHHHHHHHHHHcCC--CcEEEEEEcC-ChhHHHHhcCCcchhhccccccceee-ecCCceEEcCC-----
Confidence 379999999999999999998754 4999999997 577888999988 8999998775 3 44445656542
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCC--CeEEeecCccCCCCCCCeEecCCcch
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI--PTYVVGVNADAYKPDEPIISNASCTT 222 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~--ptvV~gVN~~~y~~~~~IISnaSCTT 222 (416)
+.++.| ++|+||+|||.+.+++.++.|+++|+ +||+++|.+++. |++|||+|++.|++ .+|||||||||
T Consensus 72 ----~~~~~~---~vDvV~~atp~~~~~~~a~~~l~aG~-~VId~sp~~~d~~~~~~V~gvN~e~~~~-~~iIanp~C~t 142 (337)
T 1cf2_P 72 ----VDDMLD---EADIVIDCTPEGIGAKNLKMYKEKGI-KAIFQGGEKHEDIGLSFNSLSNYEESYG-KDYTRVVSCNT 142 (337)
T ss_dssp ----HHHHHH---TCSEEEECCSTTHHHHHHHHHHHHTC-CEEECTTSCHHHHSCEECHHHHGGGGTT-CSEEEECCHHH
T ss_pred ----HHHHhc---CCCEEEECCCchhhHHHHHHHHHcCC-EEEEecCCCCccCCCeEEeeeCHHHhcC-CCEEEcCCcHH
Confidence 222222 79999999999999999999999996 589988885444 99999999999985 68999999999
Q ss_pred hhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccC----CCChHHHHH
Q 014890 223 NCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPT----STGAAKAVA 298 (416)
Q Consensus 223 n~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt----~tGaakav~ 298 (416)
|||+|+|++|+++| ||+++.|||||++|+. .+.+|++++||+|+ .+++++++.
T Consensus 143 t~l~~~l~pL~~~~-------------gI~~~~vtt~~a~s~p----------~~~~~~~~~NiiP~~i~~~~~~~~ei~ 199 (337)
T 1cf2_P 143 TGLCRTLKPLHDSF-------------GIKKVRAVIVRRGADP----------AQVSKGPINAIIPNPPKLPSHHGPDVK 199 (337)
T ss_dssp HHHHHHHHHHHHHH-------------CEEEEEEEEEEESSCT----------TCTTCCCSSCCEESSSSSSCTHHHHHH
T ss_pred HHHHHHHHHHHHhc-------------CcceeEEEEEEEeecC----------CccccchhcCEEeccCCCCCcchHHHH
Confidence 99999999999999 9999999999999982 13457899999999 789999999
Q ss_pred HHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCC
Q 014890 299 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSS 378 (416)
Q Consensus 299 kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~ 378 (416)
++| +| +|+++|+||||++||++++++++++++++|||+++|++++.-.+ ++.++..+..+.+++..
T Consensus 200 kil-~l--~v~~t~~rVPv~~g~~~~~~v~l~~~~t~eei~~~~~~~~~v~v-----------~~~~~~~~~~~~~~~~~ 265 (337)
T 1cf2_P 200 TVL-DI--NIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRVIL-----------ISAEDGLTSTAEIMEYA 265 (337)
T ss_dssp TTS-CC--CEEEEEEEESCCSCEEEEEEEEESSCCCHHHHHHHHHHSTTEEE-----------ECTTTTCCSHHHHHHHH
T ss_pred hhh-ee--EEEEEEEEcCccCeEEEEEEEEECCCCCHHHHHHHHHhCCCcEE-----------eccccCCCCCcchhhhh
Confidence 999 88 49999999999999999999999999999999999999864322 11222112222232211
Q ss_pred C--CcccCCceEEEEEEecCC
Q 014890 379 L--TLVMGDDMVKVIAWYDNE 397 (416)
Q Consensus 379 ~--t~v~~~~~vK~~~WyDNE 397 (416)
. ..-.+ ++.++..||||=
T Consensus 266 ~~~gr~r~-d~~~~~~w~~~~ 285 (337)
T 1cf2_P 266 KELGRSRN-DLFEIPVWRESI 285 (337)
T ss_dssp HHHTCGGG-CCCSEEEEGGGC
T ss_pred hhcCCCcc-Cchhheeehhee
Confidence 1 22233 478899999873
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-48 Score=384.19 Aligned_cols=298 Identities=20% Similarity=0.216 Sum_probs=217.6
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||+| ||+|||.++|.|++++.+++++++||+.. ..|..+.++|+.+.+. +
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~------------------------~~G~~~~~~~~~i~~~-~ 57 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASER------------------------SEGKTYRFNGKTVRVQ-N 57 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTT------------------------TTTCEEEETTEEEEEE-E
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCC------------------------CCCCceeecCceeEEe-c
Confidence 48999999 99999999999998733459999999631 1233455788887774 3
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCC----CCCCeEEeecCccCCCCC--CCeEecCCc
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKPD--EPIISNASC 220 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapsk----d~~ptvV~gVN~~~y~~~--~~IISnaSC 220 (416)
.++. +|. ++|+||+|+|.+.+++.++.|+++|++ +|+.++. ++.|++|||||++.|++. .+|||||||
T Consensus 58 ~~~~--~~~--~vDvVf~a~g~~~s~~~a~~~~~~G~~--vId~s~~~R~~~~~~~~vpevN~~~i~~~~~~~iIanp~C 131 (336)
T 2r00_A 58 VEEF--DWS--QVHIALFSAGGELSAKWAPIAAEAGVV--VIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNRNIIANPNC 131 (336)
T ss_dssp GGGC--CGG--GCSEEEECSCHHHHHHHHHHHHHTTCE--EEECSSTTTTCTTSCBCCTTTCGGGGGGGGGTTEEECCCH
T ss_pred CChH--Hhc--CCCEEEECCCchHHHHHHHHHHHcCCE--EEEcCCccccCCCCCeEeccCCHHHhccccCCcEEECCCh
Confidence 4554 674 899999999999999999999999994 4555442 368999999999999852 579999999
Q ss_pred chhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccch-hhhccchh------------HHHhhhccccccc
Q 014890 221 TTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQ-RLLDASHR------------DLRRARAAALNIV 287 (416)
Q Consensus 221 TTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q-~~lD~~~~------------d~rr~Raaa~NII 287 (416)
|||||+|+++||+++| ||++++|||+|+|||+| +.+|..|+ ++|++|++++|+|
T Consensus 132 ~tt~~~~~l~pL~~~~-------------~i~~~~vtt~~~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~nii 198 (336)
T 2r00_A 132 STIQMLVALKPIYDAV-------------GIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQIAFNCI 198 (336)
T ss_dssp HHHHHHHHHHHHHHHH-------------CEEEEEEEEEEESSSCCTTSCC-----------------------------
T ss_pred HHHHHHHHHHHHHHhC-------------CccEEEEEEEEecccCChhhhHHHHHHHHHhhcCCCCCccccchhhhcCcc
Confidence 9999999999999999 99999999999999995 58887764 6889999999999
Q ss_pred cCCC-----Ch-------HHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCccc
Q 014890 288 PTST-----GA-------AKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILS 355 (416)
Q Consensus 288 Pt~t-----Ga-------akav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~ 355 (416)
|+++ |+ .+++.++||++++|++++|+|||+++||++++++++++++++|||+++|++++. =-++.
T Consensus 199 p~~~~~~~~gh~~Ee~k~~~e~~kil~~~~~~v~~t~~rVP~~~g~~~~~~~~l~~~~t~~ei~~~~~~~~~---v~v~~ 275 (336)
T 2r00_A 199 PQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYGHAEAVHVETRAPIDAEQVMDMLEQTDG---IELFR 275 (336)
T ss_dssp CCBCTTTCSSCBHHHHHHHHHHHHHTTCTTCEEEEEEEEESSCBSEEEEEEEEESSCCCHHHHHHHHHHSTT---EEECC
T ss_pred cccCCcccCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEeccCcEEEEEEEEEeCCCCCHHHHHHHHHhCCC---eEEEC
Confidence 9975 75 566678899999999999999999999999999999999999999999998442 11222
Q ss_pred ccCCCeeeeccCCCCcceeeeCCCCcccCCceEEEEEEecCC-cchhhhHhHHHHHHhh
Q 014890 356 VCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE-WGYSQRVVDLADIVAN 413 (416)
Q Consensus 356 ~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~~vK~~~WyDNE-~gys~R~vdl~~~~~~ 413 (416)
..+-|-.-.+..|..+-.|--..... ..++.+.++++.||- +|-|-.-|-.+++|.+
T Consensus 276 ~~~~p~~~~~v~g~~~~~vgr~~~d~-~~~~~l~~~~~~DNl~kGAAg~Avq~~nl~~~ 333 (336)
T 2r00_A 276 GADFPTQVRDAGGKDHVLVGRVRNDI-SHHSGINLWVVADNVRKGAATNAVQIAELLVR 333 (336)
T ss_dssp CCSSGGGCCCCCSSSCEEEEEEEEET-TEEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHhCCCceEEEEEEEecC-CCCCEEEEEEEehhHHHhHHHHHHHHHHHHHh
Confidence 11122211144554433321000000 023467888999998 7988888888887754
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=382.55 Aligned_cols=227 Identities=15% Similarity=0.201 Sum_probs=191.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||||+|+|||.++|++.+++ +++||+|||. +++..+++++++- ++++..+
T Consensus 1 ~ikVgIiGaG~iG~~~~r~L~~~p--~~elvav~d~-~~~~~~~~a~~~g-----------------------~~~~~~~ 54 (340)
T 1b7g_O 1 MVNVAVNGYGTIGKRVADAIIKQP--DMKLVGVAKT-SPNYEAFIAHRRG-----------------------IRIYVPQ 54 (340)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCT--TEEEEEEECS-SCSHHHHHHHHTT-----------------------CCEECCG
T ss_pred CeEEEEEecCHHHHHHHHHHHcCC--CCEEEEEEcC-ChHHHHHHHHhcC-----------------------cceecCc
Confidence 379999999999999999998764 4999999997 5777888887531 1122222
Q ss_pred CCCCCCCCC-------------ccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCC-CCCeEEeecCccCCCCCCC
Q 014890 148 NPVNLPWGD-------------LGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPDEP 213 (416)
Q Consensus 148 ~p~~i~W~~-------------~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd-~~ptvV~gVN~~~y~~~~~ 213 (416)
+|.++ |++ .++|+|++|||.+.+++.++.|+++|+|+|.++++.++ .+++||+|+|++.+.+ .+
T Consensus 55 ~~~~~-~~~~~v~v~~~~e~l~~~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~sa~~~~~~~~~~v~~vN~~~~~~-~~ 132 (340)
T 1b7g_O 55 QSIKK-FEESGIPVAGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAEVADISFSALCNYNEALG-KK 132 (340)
T ss_dssp GGHHH-HHTTTCCCCCCHHHHHHHCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCGGGSSCEECHHHHHHHHTT-CS
T ss_pred CHHHH-hcccccccccCHhHhhcCCCEEEECCCCchhHHHHHHHHHcCCeEEEeCCCCCCCCCCEEEcCcchHHHcC-CC
Confidence 33333 431 27999999999999999999999999999888888754 3479999999775433 35
Q ss_pred eEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccC----
Q 014890 214 IISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPT---- 289 (416)
Q Consensus 214 IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt---- 289 (416)
+|||||||||||+|++|+|+++| ||+++.|||+|+++. ++++ .|++.+||+|+
T Consensus 133 iIsnpsCtt~~l~~~lk~L~~~~-------------gI~~~~~tt~~~~~~-------~~~~---~~~~~~niip~~~~i 189 (340)
T 1b7g_O 133 YIRVVSCNTTALLRTICTVNKVS-------------KVEKVRATIVRRAAD-------QKEV---KKGPINSLVPDPATV 189 (340)
T ss_dssp EEEECCHHHHHHHHHHHHHHTTS-------------CEEEEEEEEEEESSC-------TTCC---SCCCSSCCEESSSSS
T ss_pred CcccCCcHHHHHHHHHHHHHHhC-------------CeEEEEEEEEeccCC-------cccc---hHHHHcCCCCCCcCC
Confidence 99999999999999999999999 999999999998863 2333 46789999998
Q ss_pred CCChHHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhccc
Q 014890 290 STGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 347 (416)
Q Consensus 290 ~tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~ 347 (416)
++|+++++.+++|+|+ |+|+|+||||++||++|+++++++++++|||+++|++++.
T Consensus 190 ~t~~a~ev~~vlp~l~--l~~~a~rVPv~~gh~~~l~v~l~~~~t~eei~~~l~~a~~ 245 (340)
T 1b7g_O 190 PSHHAKDVNSVIRNLD--IATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPR 245 (340)
T ss_dssp SCTHHHHHHTTSTTCE--EEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTCTT
T ss_pred CCCchhHHHHhCCCCc--EEEEEEEeccCCeEEEEEEEEECCCCCHHHHHHHHHcCCC
Confidence 7899999999999995 9999999999999999999999999999999999998875
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-47 Score=374.75 Aligned_cols=238 Identities=20% Similarity=0.252 Sum_probs=206.7
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccc--cccccCCCceeeecCCeEEECCEEEEEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYD--STLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyD--S~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
|++||||||||+|||.++|++.+++ +++||+|+|. +++.++++++|| ++||+|++.+...+++.+.+.+
T Consensus 1 M~irVgIiG~G~iG~~~~r~l~~~~--~~elvav~d~-~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~------ 71 (334)
T 2czc_A 1 MKVKVGVNGYGTIGKRVAYAVTKQD--DMELIGITKT-KPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAG------ 71 (334)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCT--TEEEEEEEES-SCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSC------
T ss_pred CCcEEEEEeEhHHHHHHHHHHhcCC--CCEEEEEEcC-CHHHHHHHHHhcCccccccccccceeccCCceEEcC------
Confidence 5689999999999999999998864 4999999997 578899999988 8999998776212333333333
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCC-C-CeEEeecCccCCCCCCCeEecCCcch
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-I-PTYVVGVNADAYKPDEPIISNASCTT 222 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~-~-ptvV~gVN~~~y~~~~~IISnaSCTT 222 (416)
+++++.| ++|+|++|||.+...+.++.|+++| |+||+++|.+.+ . |++|+|+|++.|++ ++||+|+||||
T Consensus 72 ---d~~~l~~---~vDvV~~aTp~~~h~~~a~~~l~aG-k~Vi~sap~~~d~~~~~~v~~vn~~~~~~-~~ii~~~~C~t 143 (334)
T 2czc_A 72 ---TLNDLLE---KVDIIVDATPGGIGAKNKPLYEKAG-VKAIFQGGEKADVAEVSFVAQANYEAALG-KNYVRVVSCNT 143 (334)
T ss_dssp ---BHHHHHT---TCSEEEECCSTTHHHHHHHHHHHHT-CEEEECTTSCGGGSSEEECHHHHGGGGTT-CSEEEECCHHH
T ss_pred ---cHHHhcc---CCCEEEECCCccccHHHHHHHHHcC-CceEeecccccccccceEEeccCHHHHhh-CCcEEecCcHH
Confidence 3444434 8999999999999999999999999 679999998644 4 69999999998875 68999999999
Q ss_pred hhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccC---CCChHHHHHH
Q 014890 223 NCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPT---STGAAKAVAL 299 (416)
Q Consensus 223 n~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt---~tGaakav~k 299 (416)
|||+|++++|++. |+++.|+|||++|+.| |++|++++||+|+ .+|+++++++
T Consensus 144 ~~l~P~~~~l~~~---------------I~~g~i~ti~a~s~~~----------~~~r~~~~niiP~i~~~~g~~~~i~~ 198 (334)
T 2czc_A 144 TGLVRTLSAIREY---------------ADYVYAVMIRRAADPN----------DTKRGPINAIKPTVEVPSHHGPDVQT 198 (334)
T ss_dssp HHHHHHHHHHGGG---------------EEEEEEEEEEESSCTT----------CCSCCCSSCCEECCSSSCTHHHHHTT
T ss_pred HHHHHHHHHHHHH---------------hccccEEEEEEecCcc----------ccccChhhcEEeccCCCCchhhhhhe
Confidence 9999999999863 7999999999999974 4578999999999 8999999999
Q ss_pred HcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhccccc
Q 014890 300 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNE 349 (416)
Q Consensus 300 VlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~ 349 (416)
+|| |+ ++|+|+||||+++|++++++++++++++||++++|+++++..
T Consensus 199 ~l~-l~--l~~~~~rVPv~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~ 245 (334)
T 2czc_A 199 VIP-IN--IETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVL 245 (334)
T ss_dssp TSC-CC--EEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTSTTEE
T ss_pred EEE-EE--EEEEEEEcCCCceEEEEEEEEECCCCCHHHHHHHHHhccCCE
Confidence 999 86 999999999999999999999999999999999999998754
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=370.07 Aligned_cols=238 Identities=15% Similarity=0.160 Sum_probs=199.4
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+|||||| ||+||+.++|+++++. ++++++| |+|.|+| +|+ .+. .++|+.+.+....
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~--~~~~v~i----------~~~~~~s-~G~---~v~-------~~~g~~i~~~~~~ 58 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEER--DFDAIRP----------VFFSTSQ-LGQ---AAP-------SFGGTTGTLQDAF 58 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT--GGGGSEE----------EEEESSS-TTS---BCC-------GGGTCCCBCEETT
T ss_pred cEEEEECCCCHHHHHHHHHHHhcC--CCCeEEE----------EEEEeCC-CCC---Ccc-------ccCCCceEEEecC
Confidence 6999999 9999999999544432 2665444 7788887 776 111 1445667776655
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCC----CCCCeEEeecCccCCCCC--C--CeEecCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKPD--E--PIISNAS 219 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapsk----d~~ptvV~gVN~~~y~~~--~--~IISnaS 219 (416)
+|++ |. ++|+||+|+|.+.+++.++.|+++|+|+|||++|++ ++.|++|+|||++.|++. . ++|||||
T Consensus 59 ~~~~--~~--~~DvVf~a~g~~~s~~~a~~~~~~G~k~vVID~ss~~R~~~~~~~~vpevN~~~i~~~~~~g~~~Ianp~ 134 (367)
T 1t4b_A 59 DLEA--LK--ALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGN 134 (367)
T ss_dssp CHHH--HH--TCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEECC
T ss_pred ChHH--hc--CCCEEEECCCchhHHHHHHHHHHCCCCEEEEcCChhhccCCCCcEEeCCcCHHHHhhhhhcCCCEEEeCC
Confidence 5544 63 899999999999999999999999999999999984 367999999999988752 2 6999999
Q ss_pred cchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc--hhh-----------------hccchh---HHH
Q 014890 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD--QRL-----------------LDASHR---DLR 277 (416)
Q Consensus 220 CTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~--Q~~-----------------lD~~~~---d~r 277 (416)
|||||++|+|++|+++| ||++++|||||++||+ |.. +|.+++ |+|
T Consensus 135 Cttt~~~~al~pL~~~~-------------~I~~~~vtt~~a~SGaG~~~~~el~~~~~~l~~~~~~~~~~~~~~ild~~ 201 (367)
T 1t4b_A 135 CTVSLMLMSLGGLFAND-------------LVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIE 201 (367)
T ss_dssp HHHHHHHHHHHHHHHTT-------------CEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHTHHHHTCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-------------CCcEEEEEEEeccccccccchHHHHHHHhhhhccccccccccccchhhhh
Confidence 99999999999999999 9999999999999999 331 233454 888
Q ss_pred h----------------hhccccccccCCCC------------hHHHHHHHccc-ccCCeeeEEEeeCcccceEEEEEEE
Q 014890 278 R----------------ARAAALNIVPTSTG------------AAKAVALVLPA-LKGKLNGIALRVPTPNVSVVDLVVQ 328 (416)
Q Consensus 278 r----------------~Raaa~NIIPt~tG------------aakav~kVlPe-L~gkl~g~avRVPt~~vs~vdl~v~ 328 (416)
| ++.+++|+||++++ ..+++.|++|+ .+.||+++|+|||+++||+++++++
T Consensus 202 r~~~~~~~~~~~~~~~f~~~~a~NiiP~~~~~~~~~~t~EE~k~~~e~~kil~~~~~~~v~~t~vrVPv~~g~~~~v~v~ 281 (367)
T 1t4b_A 202 RKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIK 281 (367)
T ss_dssp HHHHHHHHHTCSCCTTTSSCCTTCEESCCSCBCTTSCBHHHHHHHHHHHHHHTCSSCCCEEEECCEESCSSEEEEEEEEE
T ss_pred hccccccccccCcccccchhhhCceEEEecCccccCccHHHHHHHHHHHHHhCcCCCceEEEEEEEcCccceEEEEEEEE
Confidence 8 58899999999988 78888999965 5558999999999999999999999
Q ss_pred EccCCCHHHHHHHHHhcc
Q 014890 329 VSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 329 l~k~vs~eeV~~a~~~aa 346 (416)
++++++.|||+++|++++
T Consensus 282 l~~~~t~eei~~~l~~~~ 299 (367)
T 1t4b_A 282 LKKDVSIPTVEELLAAHN 299 (367)
T ss_dssp ESSCCCHHHHHHHHHHHC
T ss_pred ECCCCCHHHHHHHHHhcC
Confidence 999999999999999874
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=346.26 Aligned_cols=291 Identities=13% Similarity=0.109 Sum_probs=224.1
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||+| ||+|||.++|.|.+++ ++++++|++..+.. .+||+.||+|.+.+ . ..+ .+ .+
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p--~~elvai~~~~~~g-----~~~~~~~~~~~~~v--~--~dl-------~~-~~ 76 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHP--HFQVTLMTADRKAG-----QSMESVFPHLRAQK--L--PTL-------VS-VK 76 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCS--SEEEEEEBCSTTTT-----SCHHHHCGGGTTSC--C--CCC-------BC-GG
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCC--CcEEEEEeCchhcC-----CCHHHhCchhcCcc--c--ccc-------ee-cc
Confidence 48999999 9999999999999874 59999999853322 57899999887542 0 011 11 11
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCC--CC------------------CeEEeec---
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG--DI------------------PTYVVGV--- 203 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd--~~------------------ptvV~gV--- 203 (416)
++ +|. ++|+||+|||.+.+++.++.| ++|+ ++|+.++.. ++ |++|+|+
T Consensus 77 ---~~-~~~--~vDvVf~atp~~~s~~~a~~~-~aG~--~VId~sa~~R~~~~~~y~~~y~~~~~~~~~l~~~vygvpE~ 147 (359)
T 1xyg_A 77 ---DA-DFS--TVDAVFCCLPHGTTQEIIKEL-PTAL--KIVDLSADFRLRNIAEYEEWYGQPHKAVELQKEVVYGLTEI 147 (359)
T ss_dssp ---GC-CGG--GCSEEEECCCTTTHHHHHHTS-CTTC--EEEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHH
T ss_pred ---hh-Hhc--CCCEEEEcCCchhHHHHHHHH-hCCC--EEEECCccccCCchhhhhhhhcCCcCChhhcCCceEECCcc
Confidence 22 574 899999999999999999999 9999 567777632 22 4678887
Q ss_pred CccCCCCCCCeEecCCcchhhhHHHHHHHHHHhhhhcccccccccccee--EEEEEeecccccchh-hhccchhHHHhhh
Q 014890 204 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGII--KGTMTTTHSYTGDQR-LLDASHRDLRRAR 280 (416)
Q Consensus 204 N~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~--~~~mTTiHa~T~~Q~-~lD~~~~d~rr~R 280 (416)
|++.|++ .+|||||||+|||++|+|++|+++| ||+ +++|||+|+|||+|+ ..|..|.++
T Consensus 148 n~~~i~~-~~iIanpgC~tt~~~~~l~pL~~~~-------------~i~~~~i~v~t~~~~SGaG~~~~~~~~~~~---- 209 (359)
T 1xyg_A 148 LREDIKK-ARLVANPGCYPTTIQLPLVPLLKAN-------------LIKHENIIIDAKSGVSGAGRGAKEANLYSE---- 209 (359)
T ss_dssp HHHHHHT-CSEEECCCHHHHHHHHHHHHHHHTT-------------CBCSSSCEEEEEEEGGGGCSCCCGGGBHHH----
T ss_pred CHHHhcc-CCEEECCCcHHHHHHHHHHHHHHcC-------------CCCCCeEEEEEEEEccccCcccchhhhhHH----
Confidence 9999875 6899999999999999999999999 999 999999999999987 588777655
Q ss_pred ccccccccCCCChHHHHHHHccccc---C-------CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccc-c
Q 014890 281 AAALNIVPTSTGAAKAVALVLPALK---G-------KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN-E 349 (416)
Q Consensus 281 aaa~NIIPt~tGaakav~kVlPeL~---g-------kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~-~ 349 (416)
++.||+|.+++. ++++||++ | |++++++|||+++||+++++++++++++.|||+++|+++.++ +
T Consensus 210 -~~~ni~py~~~~----h~h~pEi~~~l~~~~~~~~~v~~t~~rvP~~~G~~~~i~~~l~~~~t~eei~~~~~~~y~~~~ 284 (359)
T 1xyg_A 210 -IAEGISSYGVTR----HRHVPEIEQGLSDVAQSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVRTEDLHQQLKTSYEDEE 284 (359)
T ss_dssp -HTTCCEECSCSC----CTHHHHHHHHHHHHHTSCCCCEEECEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCS
T ss_pred -HhcCeecccccc----cccHHHHHHHHHHhcCCCCCEEEEEEEecccceEEEEEEEEeCCCCCHHHHHHHHHHhhCCCC
Confidence 468999999885 44556655 4 899999999999999999999999999999999999997653 3
Q ss_pred CCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCceEEEEEEecCC-cchhhhHhHHHHHHhh
Q 014890 350 LKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE-WGYSQRVVDLADIVAN 413 (416)
Q Consensus 350 lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~~vK~~~WyDNE-~gys~R~vdl~~~~~~ 413 (416)
+=-++...+-|-. .+..|+.+-.|- .... ..++.+.+++|.||- +|.|-.-|-.+++|..
T Consensus 285 ~V~v~~~~~~p~~-~~v~g~n~~~ig-~~~d--~~~~~l~~~~~~DNl~kGAAg~Avq~~nl~~g 345 (359)
T 1xyg_A 285 FVKVLDEGVVPRT-HNVRGSNYCHMS-VFPD--RIPGRAIIISVIDNLVKGASGQALQNLNIMLG 345 (359)
T ss_dssp SEEECCTTCCCBG-GGTTTSSCEEEE-EEEC--SSTTEEEEEEEECTTTTTTHHHHHHHHHHHTT
T ss_pred CEEEcCCCCCCCH-HHhcCCCeEEEE-EEEe--CCCCEEEEEEEehhhhHhHHHHHHHHHHHHhC
Confidence 3333322222322 245555433331 1110 123568899999999 8999999988888754
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=340.25 Aligned_cols=240 Identities=18% Similarity=0.206 Sum_probs=196.5
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||+| ||+||+.++|.|.+++ +++|++|++... . .--+|++.|+.+. ++.+.++|+.+.+ .+
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p--~~elvai~~s~~--~--~g~~~~~~~~~~~-------~~~~~~~~~~~~~-~~ 69 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKHP--YLELVKVSASPS--K--IGKKYKDAVKWIE-------QGDIPEEVQDLPI-VS 69 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCS--SEEEEEEECCGG--G--TTSBHHHHCCCCS-------SSSCCHHHHTCBE-EC
T ss_pred CcEEEEECcCCHHHHHHHHHHHhCC--CcEEEEEecChh--h--cCCCHHHhcCccc-------ccccccCCceeEE-ee
Confidence 58999999 9999999999998764 599999984211 1 1123577787653 1122233444444 33
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCC----CCCCeEEeecCccCCCC----------CC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKP----------DE 212 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapsk----d~~ptvV~gVN~~~y~~----------~~ 212 (416)
.+++. | .++|+||+|||.+.+++.++.|+++|+| ||+++++ ++.|++|+|+|++.|.. ..
T Consensus 70 ~d~~~--~--~~vDvVf~atp~~~s~~~a~~~~~aG~~--VId~s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~~~ 143 (350)
T 2ep5_A 70 TNYED--H--KDVDVVLSALPNELAESIELELVKNGKI--VVSNASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKG 143 (350)
T ss_dssp SSGGG--G--TTCSEEEECCCHHHHHHHHHHHHHTTCE--EEECSSTTTTCTTSCBCCHHHHGGGGGGHHHHHHHHTCSS
T ss_pred CCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCCE--EEECCccccCCCCCCeeCCccCHHHhcChHhhhhhcccCc
Confidence 34543 5 3899999999999999999999999994 7888874 35899999999998872 23
Q ss_pred CeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCC
Q 014890 213 PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTG 292 (416)
Q Consensus 213 ~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tG 292 (416)
+|||||||+|||++|+|++|+++| ||++++|||+|+|||+|+.. .+ .+.+++|++|+++|
T Consensus 144 ~iIanpgC~tt~~~l~l~pL~~~~-------------gi~~i~v~t~~~~SGaG~~~--~~-----~~~~~~ni~py~~~ 203 (350)
T 2ep5_A 144 ILVKNPNCTAAIMSMPIKPLIEIA-------------TKSKIIITTLQAVSGAGYNG--IS-----FMAIEGNIIPYIKG 203 (350)
T ss_dssp EEEECCCHHHHHHHHHHGGGHHHH-------------HTSEEEEEEEECGGGGCSSS--SB-----HHHHTTCCBCCCTT
T ss_pred eEEEcCchHHHHHHHHHHHHHHhc-------------CCcEEEEEEEEecCcCCCCC--CC-----ChHHhCCEEeccCC
Confidence 599999999999999999999999 99999999999999998762 22 35689999999999
Q ss_pred h-HHHH---HHHcccccC--------CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhccc
Q 014890 293 A-AKAV---ALVLPALKG--------KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 347 (416)
Q Consensus 293 a-akav---~kVlPeL~g--------kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~ 347 (416)
. .|.+ .++||+|+| |++++++|||+++||+++++++++++++.|||+++|+++..
T Consensus 204 ~e~k~~~E~~~~l~~~~g~~~~~~~~~v~~t~~rvP~~~g~~~~i~~~l~~~~t~eei~~~~~~~~~ 270 (350)
T 2ep5_A 204 EEDKIAKELTKLNGKLENNQIIPANLDSTVTSIRVPTRVGHMGVINIVTNERINIEEIKKTLKNFKS 270 (350)
T ss_dssp HHHHHHHHHHHHTCEECSSSEECCCCEEEEEEEECSCSSCEEEEEEEECCSCCCHHHHHHHHHTCCC
T ss_pred cchHHHHHHHHHHhhccccccccccccEEEEeEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhc
Confidence 6 7766 689999988 79999999999999999999999999999999999999874
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=326.05 Aligned_cols=287 Identities=16% Similarity=0.048 Sum_probs=212.3
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||+| ||+|||.++|.|.+++ ++++++|++..+.. .+|++.|+.|.+.. .+.+.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p--~~elv~v~s~~~~g-----~~~~~~~~~~~g~~-------------~~~~~-- 61 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHP--YLEVKQVTSRRFAG-----EPVHFVHPNLRGRT-------------NLKFV-- 61 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCT--TEEEEEEBCSTTTT-----SBGGGTCGGGTTTC-------------CCBCB--
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCC--CcEEEEEECchhhC-----chhHHhCchhcCcc-------------ccccc--
Confidence 58999999 9999999999998764 59999999842221 56788898876421 11121
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCC--CC-----------------CeEEeec---C
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG--DI-----------------PTYVVGV---N 204 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd--~~-----------------ptvV~gV---N 204 (416)
+++ .| .++|+||+|+|.+.+++.++.|+++|+| +|+.++.- +. +++|+|+ |
T Consensus 62 -~~~--~~--~~vDvV~~a~g~~~s~~~a~~~~~aG~~--VId~Sa~~r~~~~~~y~~~y~~h~~~e~l~~~vygvpE~n 134 (345)
T 2ozp_A 62 -PPE--KL--EPADILVLALPHGVFAREFDRYSALAPV--LVDLSADFRLKDPELYRRYYGEHPRPDLLGRFVYAVPELY 134 (345)
T ss_dssp -CGG--GC--CCCSEEEECCCTTHHHHTHHHHHTTCSE--EEECSSTTSCSCHHHHHHHHCCCSSGGGTTSSEECCHHHH
T ss_pred -chh--Hh--cCCCEEEEcCCcHHHHHHHHHHHHCCCE--EEEcCccccCCChHHHHhhhccccchhhhccCcEeccccC
Confidence 122 36 3899999999999999999999999995 45555421 11 4677777 9
Q ss_pred ccCCCCCCCeEecCCcchhhhHHHHHHHHHHhhhhcccccccccccee--EEEEEeecccccchh-hhccchhHHHhhhc
Q 014890 205 ADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGII--KGTMTTTHSYTGDQR-LLDASHRDLRRARA 281 (416)
Q Consensus 205 ~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~--~~~mTTiHa~T~~Q~-~lD~~~~d~rr~Ra 281 (416)
++.|+. .+|||||||+|||++|.+++|+++| ||+ +++|+|+|+|||+|+ .+|..|.++
T Consensus 135 ~~~i~~-~~iIanp~C~tt~~~~~l~pL~~~~-------------~i~~~~i~v~t~~~~SGaG~~~~~~~~~~~----- 195 (345)
T 2ozp_A 135 REALKG-ADWIAGAGCNATATLLGLYPLLKAG-------------VLKPTPIFVTLLISTSAGGAEASPASHHPE----- 195 (345)
T ss_dssp HHHHHT-CSEEECCCHHHHHHHHHHHHHHHTT-------------CBCSSCEEEEEEECSGGGCSSCCGGGCHHH-----
T ss_pred HHHhhc-CCEEeCCCcHHHHHHHHHHHHHHhc-------------CCCCCeEEEEEEEEccccCccccccccchh-----
Confidence 998875 6899999999999999999999999 999 999999999999974 578777654
Q ss_pred cccccccCCCChHHHHHHHccccc-----C-CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCccc
Q 014890 282 AALNIVPTSTGAAKAVALVLPALK-----G-KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILS 355 (416)
Q Consensus 282 aa~NIIPt~tGaakav~kVlPeL~-----g-kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~ 355 (416)
+..||+|.++++ ++++||++ + |++++++|||+++||+++++++++++++.|||+++|+++.+++ .+| .
T Consensus 196 ~~~n~~py~~~~----h~~~pei~~~l~~~~~v~~~~~rvP~~~g~~~~i~~~l~~~~t~eei~~~~~~~y~~~-~~v-~ 269 (345)
T 2ozp_A 196 RAGSIRVYKPTG----HRHTAEVVENLPGRPEVHLTAIATDRVRGILMTAQCFVQDGWSERDVWQAYREAYAGE-PFI-R 269 (345)
T ss_dssp HTTCCEEEECSC----CTHHHHHHHTSSSCCCEEEEEEECSCSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTC-TTE-E
T ss_pred hccccccCCCCC----ccChHhHHHHhCCCCCeEEEEEEeccccEEEEEEEEEeCCCCCHHHHHHHHHHHhCCC-CCE-E
Confidence 478999998885 66788886 6 8999999999999999999999999999999999999977542 222 2
Q ss_pred ccC-------CCeeeeccCCCCcceeeeCCCCcccCCceEEEEEEecCC-cchhhhHhHHHHHHh
Q 014890 356 VCD-------EPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE-WGYSQRVVDLADIVA 412 (416)
Q Consensus 356 ~~~-------~p~VS~Df~g~~~S~i~D~~~t~v~~~~~vK~~~WyDNE-~gys~R~vdl~~~~~ 412 (416)
+.+ -|-. .+..|..+-.| +...-...+.+.+++=-||= +|=|-.-|-.+++|.
T Consensus 270 v~~~~~~~~~~p~~-~~~~g~~~~~i---g~~~d~~~~~~~~~~~~DNl~kGAAg~Avq~~nl~~ 330 (345)
T 2ozp_A 270 LVKQKKGVHRYPDP-RFVQGTNYADI---GFELEEDTGRLVVMTAIDNLVKGTAGHALQALNVRM 330 (345)
T ss_dssp ECCCSSSSCCSCCH-HHHTTSCCEEE---EEEEETTTTEEEEEEEECTTTTTTHHHHHHHHHHHT
T ss_pred EEeCCCCcCCCCCH-HHhcCCceEEE---EEEEeCCCCEEEEEEEeccHHHHHHHHHHHHHHHHh
Confidence 221 1211 12233322211 10000112456666667884 566666666666654
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=328.41 Aligned_cols=244 Identities=21% Similarity=0.279 Sum_probs=193.1
Q ss_pred ccceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 66 QAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 66 ~m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
.|++||||+| ||+|||.++|.|.+++ +++|++|++... .. --+|++.|+.+... .+..+++.+.+.
T Consensus 6 ~M~~kV~IiGAtG~iG~~llr~L~~~p--~~ev~~i~~s~~--~~--g~~~~~~~~~~~~~-------~~~~~~~~~~~~ 72 (354)
T 1ys4_A 6 KMKIKVGVLGATGSVGQRFVQLLADHP--MFELTALAASER--SA--GKKYKDACYWFQDR-------DIPENIKDMVVI 72 (354)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCS--SEEEEEEEECTT--TT--TSBHHHHSCCCCSS-------CCCHHHHTCBCE
T ss_pred cccceEEEECcCCHHHHHHHHHHhcCC--CCEEEEEEcccc--cc--cccHHHhccccccc-------ccccCceeeEEE
Confidence 3678999999 9999999999998764 599999985211 00 01246667655210 111122223332
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCC----CCCCeEEeecCccCCCC----------
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKP---------- 210 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapsk----d~~ptvV~gVN~~~y~~---------- 210 (416)
+.++++ |.+.++|+||+|||.+.+++.++.|+++|+| ||++|++ ++.|++|+|+|++.|..
T Consensus 73 -~~~~~~--~~~~~~DvV~~atp~~~~~~~a~~~~~aG~~--VId~s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~ 147 (354)
T 1ys4_A 73 -PTDPKH--EEFEDVDIVFSALPSDLAKKFEPEFAKEGKL--IFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGW 147 (354)
T ss_dssp -ESCTTS--GGGTTCCEEEECCCHHHHHHHHHHHHHTTCE--EEECCSTTTTCTTSCBCCHHHHGGGGGHHHHHHHHHCC
T ss_pred -eCCHHH--HhcCCCCEEEECCCchHHHHHHHHHHHCCCE--EEECCchhcCCCCCCccCcccCHHHhcChhhhhhhccc
Confidence 235554 6445899999999999999999999999984 8999874 35799999999998873
Q ss_pred CCCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCC
Q 014890 211 DEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTS 290 (416)
Q Consensus 211 ~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~ 290 (416)
...|||||||+|||++|.++||+++| ||++++|+|+|++||+|+.. .+ .+.++.||+|+.
T Consensus 148 ~~~iIanpgC~tt~~~l~l~pL~~~~-------------gi~~~~v~t~~~~SGaG~~~--~~-----~~~~~~ni~py~ 207 (354)
T 1ys4_A 148 DGAIITNPNCSTICAVITLKPIMDKF-------------GLEAVFIATMQAVSGAGYNG--VP-----SMAILDNLIPFI 207 (354)
T ss_dssp SSEEEECCCHHHHHHHHHHHHHHHHH-------------CCSEEEEEEEBCSGGGCTTT--SC-----HHHHTTCCBSCC
T ss_pred CCeEEECCCHHHHHHHHHHHHHHHhc-------------CCcEEEEEEEEEcCcCCccc--cc-----chHHhCCEEecc
Confidence 23599999999999999999999999 99999999999999998762 22 246799999999
Q ss_pred CCh-HHHH---HHHcccccC--------CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhccc
Q 014890 291 TGA-AKAV---ALVLPALKG--------KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 347 (416)
Q Consensus 291 tGa-akav---~kVlPeL~g--------kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~ 347 (416)
++. .|.+ .++|++++| ||+++++|||+++||+++++++++++++.|||+++|+++..
T Consensus 208 ~~~~~k~~~Ei~~~l~~~~g~~~~~~~~~v~~~~~rvP~~~G~~~~i~~~l~~~~t~eei~~~~~~~~~ 276 (354)
T 1ys4_A 208 KNEEEKMQTESLKLLGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKEVMDKFDP 276 (354)
T ss_dssp TTHHHHHHHHHHHHTSEEETTEEECCCCEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHHCCT
T ss_pred CchhhHHHHHHHHHHhccccccccCCCceEEEEEEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhc
Confidence 985 4443 466777766 79999999999999999999999999999999999999875
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=298.79 Aligned_cols=291 Identities=17% Similarity=0.228 Sum_probs=215.2
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
|++||||.| +|.+|+.++|.|.+++.+.++++.+- |. + ..|..+.+.|+.+.+..
T Consensus 1 m~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~a---------------s~--------~-saG~~~~~~~~~~~~~~ 56 (366)
T 3pwk_A 1 MGYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLA---------------SA--------R-SAGKSLKFKDQDITIEE 56 (366)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEE---------------CT--------T-TTTCEEEETTEEEEEEE
T ss_pred CCcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEE---------------cc--------c-cCCCcceecCCCceEee
Confidence 679999999 99999999999888742335554442 11 1 45677778888777643
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCCCCCeEecCCcc
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKPDEPIISNASCT 221 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~~~~IISnaSCT 221 (416)
-++.. | .++|+||+|+|.+.+++.++.|+++|++ +|+.++ ++++|++|||||++.++...+|||||||+
T Consensus 57 -~~~~~--~--~~~Dvvf~a~~~~~s~~~a~~~~~~G~~--vIDlSa~~R~~~~~p~~vpevN~~~i~~~~~iIanpgC~ 129 (366)
T 3pwk_A 57 -TTETA--F--EGVDIALFSAGSSTSAKYAPYAVKAGVV--VVDNTSYFRQNPDVPLVVPEVNAHALDAHNGIIACPNCS 129 (366)
T ss_dssp -CCTTT--T--TTCSEEEECSCHHHHHHHHHHHHHTTCE--EEECSSTTTTCTTSCBCCHHHHGGGGTTCCSEEECCCHH
T ss_pred -CCHHH--h--cCCCEEEECCChHhHHHHHHHHHHCCCE--EEEcCCccccCCCceEEEccCCHHHHcCCCCeEECCCcH
Confidence 33443 3 3899999999999999999999999994 555554 34689999999999998657899999999
Q ss_pred hhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchh---HHHhh------------------
Q 014890 222 TNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHR---DLRRA------------------ 279 (416)
Q Consensus 222 Tn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~---d~rr~------------------ 279 (416)
|||++|+|++|++.| ||+++.|||+|++||. .+.++..+. +|+.+
T Consensus 130 tt~~~l~l~pL~~~~-------------~i~~i~v~t~~~vSGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~~y~~~~~H 196 (366)
T 3pwk_A 130 TIQMMVALEPVRQKW-------------GLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHAEILPSGGDK 196 (366)
T ss_dssp HHHHHHHHHHHHHHH-------------CCSEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHCCCGGGCCCSSSSCTTSS
T ss_pred HHHHHHHHHHHHHhC-------------CCcEEEEEEEEeccccCcchhhHHHHHHHHHhcccccccccCcccCCccccc
Confidence 999999999999999 9999999999999999 556554322 22222
Q ss_pred --hccccccccCC-----CChHHHHHHHcc-------cccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhc
Q 014890 280 --RAAALNIVPTS-----TGAAKAVALVLP-------ALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES 345 (416)
Q Consensus 280 --Raaa~NIIPt~-----tGaakav~kVlP-------eL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~a 345 (416)
+.+++|++|.. +|++++++|++. ....+++.+++|||+.+||+..++++++++++.||++++|+++
T Consensus 197 rH~~ia~NviP~I~~~~~~g~t~EE~k~~~E~~kil~~~~~~v~ftp~rVPv~rG~~~tv~v~l~~~~s~eei~~~l~~~ 276 (366)
T 3pwk_A 197 KHYPIAFNALPQIDVFTDNDYTYEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAAF 276 (366)
T ss_dssp CCCCCTTCCBCCSSCBCTTSSBHHHHHHHHHHHHHTTCTTSEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHHS
T ss_pred ccchhhccccceecccccCCCcHHHHHHHHHHHHHhcCCCCCeEEEEEEechhccEEEEEEEEECCCCCHHHHHHHHHhC
Confidence 67899999986 588888876654 3344699999999999999999999999999999999999997
Q ss_pred ccccCCCcccccCC------CeeeeccCCCCcceee----eCCCCcccCCceEEEEEEecCC-cchhhhHhHHHHHHhh
Q 014890 346 ADNELKGILSVCDE------PLVSVDFRCSDVSSTV----DSSLTLVMGDDMVKVIAWYDNE-WGYSQRVVDLADIVAN 413 (416)
Q Consensus 346 a~~~lkgil~~~~~------p~VS~Df~g~~~S~i~----D~~~t~v~~~~~vK~~~WyDNE-~gys~R~vdl~~~~~~ 413 (416)
+ +| .+.++ |-. .+..|...-.|- |. ..++.+.+++=-||= +|=|-.-|-.+++|.+
T Consensus 277 ~-----~V-~v~~~~~~~~~P~~-~~v~gtn~~~Vgr~r~d~-----~~~~~l~~~~~~DNL~KGAAg~AVQn~nlm~~ 343 (366)
T 3pwk_A 277 P-----GA-VLEDDVAHQIYPQA-INAVGSRDTFVGRIRKDL-----DAEKGIHMWVVSDNLLKGAAWNSVQIAETLHE 343 (366)
T ss_dssp T-----TE-EECCBGGGTBCCCH-HHHTTCSSEEEEEEEECS-----SCTTEEEEEEEECTTTTTTHHHHHHHHHHHHH
T ss_pred C-----Cc-EEecCcccCCCCch-hHcCCCCEEEEEEEEecC-----CCCCEEEEEEEEccHHHhHHHHHHHHHHHHHH
Confidence 3 22 22222 211 133343322110 11 123446666668994 5766666666666644
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=305.69 Aligned_cols=304 Identities=17% Similarity=0.223 Sum_probs=210.3
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecC--CChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT--GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~--~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
|++||||.| +|-+|+.++|.|.+++ .++|+.+-.. .+- .+...+.+- .|..++... +.+.+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP--~~el~~l~S~~saGk-~~~~~~p~~-~~~~~~~~~------------~~~~v 69 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHP--YIKPAYLAGKGSVGK-PYGEVVRWQ-TVGQVPKEI------------ADMEI 69 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCS--SEEEEEEEESTTTTS-BHHHHCCCC-SSSCCCHHH------------HTCBC
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCC--CceEEEEECchhcCC-ChhHhcccc-ccccccccc------------ccceE
Confidence 368999999 8999999999887764 5899888542 111 111111000 000000000 01112
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC--CCCCCeEEeecCccCCCC--C--------
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG--KGDIPTYVVGVNADAYKP--D-------- 211 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps--kd~~ptvV~gVN~~~y~~--~-------- 211 (416)
. +-+++.+ .++|+||+|+|.+.+++.++.|+++|+|.|.+|++. +++.|++|||||++.++. .
T Consensus 70 ~-~~~~~~~----~~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~ 144 (359)
T 4dpk_A 70 K-PTDPKLM----DDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWK 144 (359)
T ss_dssp E-ECCGGGC----TTCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCS
T ss_pred E-eCCHHHh----cCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccC
Confidence 1 1233333 389999999999999999999999999766666664 346899999999999853 1
Q ss_pred CCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCC
Q 014890 212 EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTST 291 (416)
Q Consensus 212 ~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~t 291 (416)
.+|||||||+|||++|+|+||+++| ||+++.|+|+|+|||+|+. . .+ .+.++.|++|+.+
T Consensus 145 ~~iIanPgC~tt~~~l~L~PL~~~~-------------gi~~v~v~t~~g~SGaG~~-~-~~-----~~~~~~N~ipy~~ 204 (359)
T 4dpk_A 145 GFIVTTPLCTAQGAAIPLGAIFKDY-------------KMDGAFITTIQSLSGAGYP-G-IP-----SLDVVDNILPLGD 204 (359)
T ss_dssp SEEEECCCHHHHHHHHHHHHHHHHS-------------CEEEEEEEEEECSGGGCSS-C-SB-----GGGTTTCCEECCH
T ss_pred ccEEECCCcHHHHHHHHHHHHHHhc-------------CCcEEEEEEEeccccCCCc-C-cc-----ChHHhCCeEeecC
Confidence 2599999999999999999999999 9999999999999999876 2 22 1568999999998
Q ss_pred Ch-HHH---HHHHcccccC----------CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCccccc
Q 014890 292 GA-AKA---VALVLPALKG----------KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 357 (416)
Q Consensus 292 Ga-aka---v~kVlPeL~g----------kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~ 357 (416)
+. .|. +.++|++|+| +++++++|||+++||+++++++++++++.|||+++|+++.+.+..=.|-..
T Consensus 205 ~~e~k~~~Ei~kil~~l~g~~~~~~~~~~~v~~t~~rVPv~rG~~~tv~v~l~~~~t~eei~~~l~~~~~~~~~~~l~~~ 284 (359)
T 4dpk_A 205 GYDAKTIKEIFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTA 284 (359)
T ss_dssp HHHHHHHHHHHHHHHTSCCSCCCSCGGGCEEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHTCCCHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHhhcccccccccccCCceEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHhhcccccccccCC
Confidence 75 554 6788998877 799999999999999999999999999999999999998765211112222
Q ss_pred CCCeeee----c------cCCCC----cceeeeCCCCcccCCceEEEEEEecCC-cchhhhHhHHHHHHhh
Q 014890 358 DEPLVSV----D------FRCSD----VSSTVDSSLTLVMGDDMVKVIAWYDNE-WGYSQRVVDLADIVAN 413 (416)
Q Consensus 358 ~~p~VS~----D------f~g~~----~S~i~D~~~t~v~~~~~vK~~~WyDNE-~gys~R~vdl~~~~~~ 413 (416)
.+|+|-. + ..|.. ..+.|- .... .+++.+.+++=-||= +|=|-.-|-.+++|.+
T Consensus 285 p~~fV~v~~~~~~P~~~~~~g~~~~~~~~~~Vg-r~r~-~~~~~l~~~~~~DNL~KGAAg~AVQn~nl~~~ 353 (359)
T 4dpk_A 285 PSKPIIVMNEDTRPQVYFDRWAGDIPGMSVVVG-RLKQ-VNKRMIRLVSLIHNTVRGAAGGGILAAELLVE 353 (359)
T ss_dssp CSCSEEECCSTTCCCHHHHTTCTTTTTCSEEEE-EEEE-EETTEEEEEEEECTTTTTTHHHHHHHHHHHHH
T ss_pred CCccEEEcCCCCCCCHHHhhccCCCcCCeEEEE-EEEE-cCCCEEEEEEEEhhhhHhHHHHHHHHHHHHHH
Confidence 2232221 0 01000 111110 0000 123457777778994 6766666666766654
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=305.69 Aligned_cols=304 Identities=17% Similarity=0.221 Sum_probs=210.2
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecC--CChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT--GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~--~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
|++||||.| +|-+|+.++|.|.+++ .++|+.+-.. .+- .+...+.+- .|..++... +.+.+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP--~~el~~l~S~~saGk-~~~~~~p~~-~~~~~~~~~------------~~~~v 69 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHP--YIKPAYLAGKGSVGK-PYGEVVRWQ-TVGQVPKEI------------ADMEI 69 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCS--SEEEEEEEESTTTTS-BHHHHCCCC-SSSCCCHHH------------HTCBC
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCC--CceEEEEECchhcCC-ChhHhcccc-ccccccccc------------ccceE
Confidence 368999999 8999999999887764 5899888542 111 111111000 000000000 01112
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC--CCCCCeEEeecCccCCCC--C--------
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG--KGDIPTYVVGVNADAYKP--D-------- 211 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps--kd~~ptvV~gVN~~~y~~--~-------- 211 (416)
. +-+++.+ .++|+||+|+|.+.+++.++.|+++|+|.|.+|++. +++.|++|||||++.++. .
T Consensus 70 ~-~~~~~~~----~~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~ 144 (359)
T 4dpl_A 70 K-PTDPKLM----DDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWK 144 (359)
T ss_dssp E-ECCGGGC----TTCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCS
T ss_pred E-eCCHHHh----cCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccC
Confidence 1 1233333 389999999999999999999999999766666664 346899999999999853 1
Q ss_pred CCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCC
Q 014890 212 EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTST 291 (416)
Q Consensus 212 ~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~t 291 (416)
.+|||||||+|||++|+|+||+++| ||+++.|+|+|+|||+|+. . .+. +.++.|++|+.+
T Consensus 145 ~~iIanPgC~tt~~~l~L~PL~~~~-------------gi~~v~v~t~~g~SGaG~~-~-~~~-----~~~~~N~ipy~~ 204 (359)
T 4dpl_A 145 GFIVTTPLCTAQGAAIPLGAIFKDY-------------KMDGAFITTIQSLSGAGYP-G-IPS-----LDVVDNILPLGD 204 (359)
T ss_dssp SEEEECCCHHHHHHHHHHHHHHHHS-------------CEEEEEEEEEBCGGGGCSS-C-SBH-----HHHTTCCEECCH
T ss_pred ccEEECCCcHHHHHHHHHHHHHHhc-------------CCcEEEEEEEeccccCCCc-C-ccC-----hHHhCCeEeecC
Confidence 2599999999999999999999999 9999999999999999876 2 221 467899999998
Q ss_pred Ch-HHH---HHHHcccccC----------CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCccccc
Q 014890 292 GA-AKA---VALVLPALKG----------KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 357 (416)
Q Consensus 292 Ga-aka---v~kVlPeL~g----------kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~ 357 (416)
+. .|. +.++|++|+| +++++++|||+++||+++++++++++++.|||+++|+++.+.+..=.|-..
T Consensus 205 ~~e~k~~~Ei~kil~~l~g~~~~~~~~~~~v~~t~~rVPv~rG~~~tv~v~l~~~~t~eei~~~l~~~~~~~~~~~l~~~ 284 (359)
T 4dpl_A 205 GYDAKTIKEIFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTA 284 (359)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSCCSCGGGCEEEEECEECSCSSCEEEEEEEEESSCCCHHHHHHHHHTCCCHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHhhcccccccccccCCceEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHhhcccccccccCC
Confidence 75 554 6788998877 799999999999999999999999999999999999998765211112222
Q ss_pred CCCeeee----c------cCCCC----cceeeeCCCCcccCCceEEEEEEecCC-cchhhhHhHHHHHHhh
Q 014890 358 DEPLVSV----D------FRCSD----VSSTVDSSLTLVMGDDMVKVIAWYDNE-WGYSQRVVDLADIVAN 413 (416)
Q Consensus 358 ~~p~VS~----D------f~g~~----~S~i~D~~~t~v~~~~~vK~~~WyDNE-~gys~R~vdl~~~~~~ 413 (416)
.+|+|-. + ..|.. ..+.|- .... .+++.+.+++=-||= +|=|-.-|-.+++|.+
T Consensus 285 p~~fV~v~~~~~~P~~~~~~g~~~~~~~~~~Vg-r~r~-~~~~~l~~~~~~DNL~KGAAg~AVQn~nl~~~ 353 (359)
T 4dpl_A 285 PSKPIIVMNEDTRPQVYFDRWAGDIPGMSVVVG-RLKQ-VNKRMIRLVSLIHNTVRGAAGGGILAAELLVE 353 (359)
T ss_dssp CSCSEEEECSTTCCCHHHHTTCTTTTTCSEEEE-EEEE-EETTEEEEEEEECTTTTTTHHHHHHHHHHHHH
T ss_pred CCccEEEcCCCCCCCHHHhhccCCCcCCeEEEE-EEEE-cCCCEEEEEEEEhhhhHhHHHHHHHHHHHHHH
Confidence 2232221 0 01100 111110 0000 123457777778994 6766666666766654
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=307.10 Aligned_cols=294 Identities=14% Similarity=0.134 Sum_probs=205.7
Q ss_pred ceeEEEEc-cChhHHHHHH-HHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEE-ECCEEEEEE
Q 014890 68 KLKVAING-FGRIGRNFLR-CWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGIS-VDGKVIQVV 144 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr-~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~-v~G~~I~v~ 144 (416)
++||||+| +|-+|+.++| .|.+++.+.++++.+... ..|+.+. +.|+.+.+.
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-------------------------~aG~~~~~~~~~~~~v~ 58 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-------------------------NAGGKAPSFAKNETTLK 58 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-------------------------CTTSBCCTTCCSCCBCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-------------------------hcCCCHHHcCCCceEEE
Confidence 37999999 9999999999 887775333566555321 0111110 333333333
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCC----CCCCeEEeecCccCCCCC--CC--eEe
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKPD--EP--IIS 216 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapsk----d~~ptvV~gVN~~~y~~~--~~--IIS 216 (416)
...+++. | .++|+||+|+|.+.+++.++.|+++|+|++|||+|+. ++.|++|||||++.++.. ++ +||
T Consensus 59 ~~~~~~~--~--~~vDvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~~~i~~Ia 134 (377)
T 3uw3_A 59 DATSIDD--L--KKCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVIKDALVNGTKNFI 134 (377)
T ss_dssp ETTCHHH--H--HTCSEEEECSCHHHHHHHHHHHHHTTCCSEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEE
T ss_pred eCCChhH--h--cCCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCcccccCCCCceECCcCCHHHHhhhhhcCCcEEE
Confidence 2222222 2 3899999999999999999999999999899999983 367999999999988642 34 499
Q ss_pred cCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHH-------------------
Q 014890 217 NASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDL------------------- 276 (416)
Q Consensus 217 naSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~------------------- 276 (416)
||||||||++|+|++|+++| ||+++.|||+|++||. .+.++..+...
T Consensus 135 np~C~tt~~~l~L~pL~~~~-------------~I~~i~v~t~~avSGAG~~~~~el~~q~~~l~~~~~~~~~~p~~~il 201 (377)
T 3uw3_A 135 GGNCTVSLMLMALGGLFREN-------------LVDWMTAMTYQAASGAGAQNMRELLAQMGTLNGAVAAQLADPASAIL 201 (377)
T ss_dssp ECCHHHHHHHHHHHHHHHTT-------------CEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHTTHHHHTCTTSCHH
T ss_pred cCCHHHHHHHHHHHHHHHhC-------------CCCEEEEeeeecccccchhhHHHHHHHHHHhhccccccccccccccc
Confidence 99999999999999999999 9999999999999998 55544332111
Q ss_pred ------------------HhhhccccccccCC-----CChHHHHHH-------Hcccc------cCCeeeEEEeeCcccc
Q 014890 277 ------------------RRARAAALNIVPTS-----TGAAKAVAL-------VLPAL------KGKLNGIALRVPTPNV 320 (416)
Q Consensus 277 ------------------rr~Raaa~NIIPt~-----tGaakav~k-------VlPeL------~gkl~g~avRVPt~~v 320 (416)
..++.+++|++|.. .|+++++.| ++.++ .-+++++|+|||+.+|
T Consensus 202 d~~~~~~~~~~~~~~~~~~f~~~ia~N~~P~i~~~~~~g~t~EE~ki~~E~~kilg~~~~~~~~~i~Vs~t~vrVPv~rG 281 (377)
T 3uw3_A 202 DIDRRVLAAMNGDAMPTSQFGVPLAGSLIPWIDKDLGNGMSREEWKGGAETNKILGKPAMGEPGSVPVDGLCVRIGAMRC 281 (377)
T ss_dssp HHHHHHHHHHHSTTSCCTTTSSCCTBSCBSCCSCBCSSSCBHHHHHHHHHHHHHHTCCCTTSTTCCCEEEECCBCSBSSE
T ss_pred cccccccccccccccccccccccccCceEEeecccccCCCCHHHHHHHHHHHHHhcccccccCCCceEEEEeEEecccce
Confidence 01234789999996 366666554 44432 3469999999999999
Q ss_pred eEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCC-------CeeeeccCCCCccee----eeCCCCcccCCceEE
Q 014890 321 SVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDE-------PLVSVDFRCSDVSST----VDSSLTLVMGDDMVK 389 (416)
Q Consensus 321 s~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~-------p~VS~Df~g~~~S~i----~D~~~t~v~~~~~vK 389 (416)
|+..++++++++++.||++++|+++. + +|.-+.++ |- -.+..|...-.| .|. .+++.+.
T Consensus 282 h~~tv~v~~~~~~~~eei~~~l~~~~--p--~V~v~~~~~~~~~~~P~-p~~v~G~n~v~VGrir~d~-----~~~~~l~ 351 (377)
T 3uw3_A 282 HSQALTIKLKKDVPLDEINGILASAN--D--WVKVVPNEREASMRDLS-PAKVTGTLSVPVGRLRKLA-----MGGEYLS 351 (377)
T ss_dssp EEEEEEEEESSCCCHHHHHHHHHTSC--S--SEEECCSSHHHHHHHSS-HHHHTTSSCEEEEEEEECT-----TCTTEEE
T ss_pred EEEEEEEEeCCCCCHHHHHHHHHhCC--C--CEEEecCCcccccCCCC-HHHhcCCCcEEEEEEEECC-----CCCCEEE
Confidence 99999999999999999999999872 1 22212121 10 113344332211 121 1234455
Q ss_pred EEEEecC-CcchhhhHhHHHHHHhh
Q 014890 390 VIAWYDN-EWGYSQRVVDLADIVAN 413 (416)
Q Consensus 390 ~~~WyDN-E~gys~R~vdl~~~~~~ 413 (416)
+.+=-|| -||=|-..+-.++.|.+
T Consensus 352 ~~~v~DNL~KGAAgqAvqn~nl~~~ 376 (377)
T 3uw3_A 352 AFTVGDQLLWGAAEPLRRMLRILLD 376 (377)
T ss_dssp EEEEEETTCCCCCHHHHHHHHHHHC
T ss_pred EEEEehhhhHhHHHHHHHHHHHHhh
Confidence 6666788 46777777777776643
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=305.11 Aligned_cols=292 Identities=15% Similarity=0.139 Sum_probs=204.7
Q ss_pred eeEEEEc-cChhHHHHHH-HHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeE-EECCEEEEEEe
Q 014890 69 LKVAING-FGRIGRNFLR-CWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGI-SVDGKVIQVVS 145 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr-~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i-~v~G~~I~v~~ 145 (416)
|||||+| +|-+|+.++| .|.+++.+.++++.+... + -|+ .+ .+.|+.+.+..
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-------------~-aG~-----------~~~~~~~~~~~~~~ 55 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTS-------------Q-IGV-----------PAPNFGKDAGMLHD 55 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESS-------------S-TTS-----------BCCCSSSCCCBCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEecc-------------c-cCc-----------CHHHhCCCceEEEe
Confidence 5899999 9999999999 888775334566555321 1 111 11 13333333333
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCC----CCCCeEEeecCccCCCCC--C--CeEec
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKPD--E--PIISN 217 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapsk----d~~ptvV~gVN~~~y~~~--~--~IISn 217 (416)
..+++. | .++|+||+|+|.+.+++.++.|+++|+|++|||+|+. ++.|++|||||++.|++. + ++|||
T Consensus 56 ~~~~~~--~--~~~Dvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~~~i~~Ian 131 (370)
T 3pzr_A 56 AFDIES--L--KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGTKTFVG 131 (370)
T ss_dssp TTCHHH--H--TTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCChhH--h--ccCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCchhccCCCCcEEcccCCHHHHhhhhhcCCcEEEc
Confidence 223322 2 3899999999999999999999999999899999983 367999999999988642 3 35999
Q ss_pred CCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHH--------------------
Q 014890 218 ASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDL-------------------- 276 (416)
Q Consensus 218 aSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~-------------------- 276 (416)
|||||||++|+|++|+++| ||+++.|||+|++||. .+.++..+...
T Consensus 132 p~C~tt~~~l~L~pL~~~~-------------~I~~i~v~t~~avSGAG~~~~~el~~q~~~~~~~~~~~l~~p~~~ild 198 (370)
T 3pzr_A 132 GNCTVSLMLMALGGLYERG-------------LVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANPASSILD 198 (370)
T ss_dssp CCHHHHHHHHHHHHHHHTT-------------CEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHH
T ss_pred CChHHHHHHHHHHHHHHhC-------------CCcEEEEEeEEeccccChhhHHHHHHHHHHhhcccccccccccccccc
Confidence 9999999999999999999 9999999999999998 55544332111
Q ss_pred -----------------HhhhccccccccCCC-----ChHHHHHHH-------ccc--ccCCeeeEEEeeCcccceEEEE
Q 014890 277 -----------------RRARAAALNIVPTST-----GAAKAVALV-------LPA--LKGKLNGIALRVPTPNVSVVDL 325 (416)
Q Consensus 277 -----------------rr~Raaa~NIIPt~t-----Gaakav~kV-------lPe--L~gkl~g~avRVPt~~vs~vdl 325 (416)
..++..++|++|+.. |+++++.|+ +.. -.-+++++|+|||+.+||+..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~f~~~ia~N~~P~i~~~~~~g~t~EE~ki~~E~~kilg~~~~~i~V~~t~vrVPv~rGh~~tv 278 (370)
T 3pzr_A 199 IDKKVAETMRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRCHSQAL 278 (370)
T ss_dssp HHHHHHHHHHSTTSCCTTTSSCCTTSEESCCSCBCTTSCBHHHHHHHHHHHHHTTCTTSCCCEECCCCEESCSSEEEEEE
T ss_pred ccccccccccccccccccccccccCceeeeccccccCCCCHHHHHHHHHHHHHhCccCCCceEEEEeEEecccceEEEEE
Confidence 012347899999973 666665544 432 1236999999999999999999
Q ss_pred EEEEccCCCHHHHHHHHHhcccccCCCcccccCC--------CeeeeccCCCCccee----eeCCCCcccCCceEEEEEE
Q 014890 326 VVQVSKKTFAEEVNAAFRESADNELKGILSVCDE--------PLVSVDFRCSDVSST----VDSSLTLVMGDDMVKVIAW 393 (416)
Q Consensus 326 ~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~--------p~VS~Df~g~~~S~i----~D~~~t~v~~~~~vK~~~W 393 (416)
+++++++++.||++++|+++. + +| .+.++ |- -.+..|.....| .|. .+++.+.+.+=
T Consensus 279 ~v~~~~~~~~~ei~~~l~~~~--p--~V-~v~~~~~~~~~~~P~-p~~v~G~n~v~VGrir~d~-----~~~~~l~~~~v 347 (370)
T 3pzr_A 279 TIKLKQNIPLDEIEEMIATHN--D--WV-KVIPNERDITARELT-PAKVTGTLSVPVGRLRKMA-----MGDDFLNAFTV 347 (370)
T ss_dssp EEEESSCCCHHHHHHHHHTSC--S--SE-EECCSCHHHHHHHSS-HHHHTTSCCEEEEEEEEET-----TEEEEEEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHhCC--C--CE-EEecCCcccccCCCC-HHHhcCCccEEEEEEEECC-----CCCCEEEEEEE
Confidence 999999999999999999872 1 22 22221 11 113344332211 121 11233445555
Q ss_pred ecC-CcchhhhHhHHHHHHhh
Q 014890 394 YDN-EWGYSQRVVDLADIVAN 413 (416)
Q Consensus 394 yDN-E~gys~R~vdl~~~~~~ 413 (416)
-|| -||=|-..+-.++.|.+
T Consensus 348 ~DNL~KGAAgqAvQn~Nl~~~ 368 (370)
T 3pzr_A 348 GDQLLWGAAEPLRRTLRIILA 368 (370)
T ss_dssp EETTTTTTHHHHHHHHHHHHH
T ss_pred ehhhhHhHHHHHHHHHHHHHh
Confidence 788 46877777777777654
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=289.07 Aligned_cols=291 Identities=19% Similarity=0.268 Sum_probs=210.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||||.| +|-+|+.++|.|.+++.+.++++.+. |. + +.|..+.+.|+.+.+.. -
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~---------------s~--------~-~aG~~~~~~~~~~~~~~-~ 56 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFA---------------SA--------R-SQGRKLAFRGQEIEVED-A 56 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE---------------CT--------T-TSSCEEEETTEEEEEEE-T
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEE---------------Cc--------c-cCCCceeecCCceEEEe-C
Confidence 7999999 99999999999988742335554442 21 1 45677778888777644 3
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCc-cCCCCC-CCeEecCCcc
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNA-DAYKPD-EPIISNASCT 221 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~-~~y~~~-~~IISnaSCT 221 (416)
++.. | .++|+||+|+|.+.+++.++.|+++|+ +||+.++ ++++|++|||||+ +.+++. ++|||||||+
T Consensus 57 ~~~~--~--~~~Dvvf~a~~~~~s~~~a~~~~~~G~--~vID~Sa~~R~~~~~p~~vpevN~~~~i~~~~~~iIanpgC~ 130 (344)
T 3tz6_A 57 ETAD--P--SGLDIALFSAGSAMSKVQAPRFAAAGV--TVIDNSSAWRKDPDVPLVVSEVNFERDAHRRPKGIIANPNCT 130 (344)
T ss_dssp TTSC--C--TTCSEEEECSCHHHHHHHHHHHHHTTC--EEEECSSTTTTCTTSCBCCTTTSHHHHTTCCTTSEEECCCHH
T ss_pred CHHH--h--ccCCEEEECCChHHHHHHHHHHHhCCC--EEEECCCccccCCCccEEEccCCCHHHhhhcCCCEEECCCcH
Confidence 3433 3 389999999999999999999999999 5677766 3468999999999 888764 6899999999
Q ss_pred hhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHHH-----------------------
Q 014890 222 TNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDLR----------------------- 277 (416)
Q Consensus 222 Tn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~r----------------------- 277 (416)
|||++|+|++|+++| ||+++.|||+|+|||. .+.++..+...+
T Consensus 131 tt~~~l~l~pL~~~~-------------~i~~i~v~t~~~~SGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T 3tz6_A 131 TMAAMPVLKVLHDEA-------------RLVRLVVSSYQAVSGSGLAGVAELAEQARAVIGGAEQLVYDGGALEFPPPNT 197 (344)
T ss_dssp HHHHHHHHHHHHHHH-------------CEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHGGGGGGGGTCTTSSCCCCCSS
T ss_pred HHHHHHHHHHHHHhC-------------CCceEEEEeccCCCccChhhhHHHHHHHHhhhcccccccccccccccccccc
Confidence 999999999999999 9999999999999999 566665443221
Q ss_pred hhhccccccccCC-----CCh--HHHHHH-------HcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHH
Q 014890 278 RARAAALNIVPTS-----TGA--AKAVAL-------VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFR 343 (416)
Q Consensus 278 r~Raaa~NIIPt~-----tGa--akav~k-------VlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~ 343 (416)
.....++|++|+. +|+ ++++.| ++..-.-+++.+|+|||+.+||+..++++++++++.||++++|+
T Consensus 198 ~~~~~aynv~p~i~~~~~~ghrHt~EE~k~~~e~~kilg~~~~~v~ft~vrvPv~rGh~~tv~v~l~~~~s~eei~~~l~ 277 (344)
T 3tz6_A 198 YVAPIAFNVVPLAGSLVDDGSGETDEDQKLRFESRKILGIPDLLVSGTCVRVPVFTGHSLSINAEFAQPLSPERARELLD 277 (344)
T ss_dssp SSSCCTTCCBCCCSCBCSSSSCCBHHHHHHHHHHHHHHTCTTCEEEEECCBCSCSSCEEEEEEEEESSCCCHHHHHHHHH
T ss_pred ccccccccccccccccccCCCcCCHHHHHHHHHHHHhcCCCCCceEEEEEEeceeceEEEEEEEEECCCCCHHHHHHHHh
Confidence 1234899999984 355 666444 44211236999999999999999999999999999999999999
Q ss_pred hcccccCCCcccccCCCeeeeccCCCCccee----eeCCCCcccCCceEEEEEEecCC-cchhhhHhHHHHHHhh
Q 014890 344 ESADNELKGILSVCDEPLVSVDFRCSDVSST----VDSSLTLVMGDDMVKVIAWYDNE-WGYSQRVVDLADIVAN 413 (416)
Q Consensus 344 ~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i----~D~~~t~v~~~~~vK~~~WyDNE-~gys~R~vdl~~~~~~ 413 (416)
+++- | .+.+-|-. .+..|.....| .|... -+++.+.+++=-||= ||=|-.-|-.+++|.+
T Consensus 278 ~~p~-----V-~v~~~P~p-~~v~gtn~~~Vgrir~d~~~---~~~~~l~~~~~~DNL~KGAAg~AVQ~anll~~ 342 (344)
T 3tz6_A 278 GATG-----V-QLVDVPTP-LAAAGVDESLVGRIRRDPGV---PDGRGLALFVSGDNLRKGAALNTIQIAELLTA 342 (344)
T ss_dssp HCTT-----E-EECSSCCH-HHHTTCSSEEEEEEEECTTS---GGGCEEEEEEEECTTTTTTHHHHHHHHHHHTC
T ss_pred cCCC-----e-EEECCCCh-HHhCCCceEEEEEEEecCCC---CCCCEEEEEEEEcchhHhHHHHHHHHHHHHHh
Confidence 6532 1 22222211 13344332222 11100 001256677778994 6766666666666643
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=280.89 Aligned_cols=293 Identities=13% Similarity=0.129 Sum_probs=205.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||+|.| +|.+|+.++|.|.+++ +++++++-...+.+..-..+ ...|..|.+.. .+.+....
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~p--~~el~~l~s~~~~~saGk~~--~~~~p~~~~~~-------------~~~v~~~~ 67 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRHP--HMNITALTVSAQSNDAGKLI--SDLHPQLKGIV-------------ELPLQPMS 67 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCT--TEEEEEEEEETTCTTTTSBH--HHHCGGGTTTC-------------CCBEEEES
T ss_pred eEEEEECCCChHHHHHHHHHHhCC--CCcEEEEEecCchhhcCCch--HHhCccccCcc-------------ceeEeccC
Confidence 7999999 8999999999998864 48988875321000000000 11111111100 12222110
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC--CC-CCC---------------eEEeec---Ccc
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG--KG-DIP---------------TYVVGV---NAD 206 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps--kd-~~p---------------tvV~gV---N~~ 206 (416)
+++++ . .++|+||+|+|.+.+++.++.|+++|+|.|-+|++. ++ ++| ++|||+ |.+
T Consensus 68 ~~~~~--~-~~~Dvvf~a~p~~~s~~~~~~~~~~g~~vIDlSa~fR~~d~~v~~~wy~~~~~~p~l~~~~vyglPEvn~~ 144 (337)
T 3dr3_A 68 DISEF--S-PGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLAEWCGN 144 (337)
T ss_dssp SGGGT--C-TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTSSSCHHHHHHHTSSCCSCHHHHHHCEECCTTTCCH
T ss_pred CHHHH--h-cCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCccccCCcccchhhccccccChhhhcceEEEccccCHH
Confidence 23332 1 389999999999999999999999999654445543 22 222 456666 999
Q ss_pred CCCCCCCeEecCCcchhhhHHHHHHHHH--HhhhhccccccccccceeEE-EEEeecccccc-hhhhccchhHHHhhhcc
Q 014890 207 AYKPDEPIISNASCTTNCLAPFVKVLDQ--KFVTQLNDRIFPMCAGIIKG-TMTTTHSYTGD-QRLLDASHRDLRRARAA 282 (416)
Q Consensus 207 ~y~~~~~IISnaSCTTn~Lap~lkvL~~--~f~~~~~~~~~~~~~GI~~~-~mTTiHa~T~~-Q~~lD~~~~d~rr~Raa 282 (416)
.+++ .+|||||||+|||++++|+||++ .| |++++ .|+|+|+|||+ ++.+|..|.+.|
T Consensus 145 ~i~~-~~iIanPgC~tt~~~l~L~PL~~~g~~-------------~~~~i~~v~t~~g~SGaG~~~~~~~~~~~~----- 205 (337)
T 3dr3_A 145 KLKE-ANLIAVPGCYPTAAQLALKPLIDADLL-------------DLNQWPVINATSGVSGAGRKAAISNSFCEV----- 205 (337)
T ss_dssp HHHT-CSEEECCCHHHHHHHHHHHHHHHTTCB-------------CTTSCCEEEEEECGGGGCSCCCSTTSGGGC-----
T ss_pred HhCC-CCEEecCChHHHHHHHHHHHHHHcCcc-------------CCCceEEEEEeeccccCCcccccccccccc-----
Confidence 8864 68999999999999999999999 68 99999 99999999999 577776666544
Q ss_pred ccccccCCCChHHHHHHHcccccC----CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcc-cccCCCccccc
Q 014890 283 ALNIVPTSTGAAKAVALVLPALKG----KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA-DNELKGILSVC 357 (416)
Q Consensus 283 a~NIIPt~tGaakav~kVlPeL~g----kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa-~~~lkgil~~~ 357 (416)
|++|..++. ++++||+++ +++++++|||+++||+++++++++++++.|||+++|+++- ..++=-++.-.
T Consensus 206 --n~~py~~~~----h~h~Pei~~~l~~~v~ft~~rvPv~rG~~~ti~~~l~~~~t~eev~~~l~~~Y~~~p~V~v~~~~ 279 (337)
T 3dr3_A 206 --SLQPYGVFT----HRHQPEIATHLGADVIFTPHLGNFPRGILETITCRLKSGVTQAQVAQALQQAYAHKPLVRLYDKG 279 (337)
T ss_dssp --SEEECSTTT----CTHHHHHHHHHTSCCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCTTEEECSSS
T ss_pred --ceEccCccc----ceechhHHhhhcCCEEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHHhCCCCCEEECCCC
Confidence 999998876 457888877 8999999999999999999999999999999999999873 33333333211
Q ss_pred CCCeeeeccCCCCcceeeeCCCCcccCCceEEEEEEecC-CcchhhhHhHHHHHHhh
Q 014890 358 DEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDN-EWGYSQRVVDLADIVAN 413 (416)
Q Consensus 358 ~~p~VS~Df~g~~~S~i~D~~~t~v~~~~~vK~~~WyDN-E~gys~R~vdl~~~~~~ 413 (416)
+ |.. .+..|..+-.|- ...+++.+.+++..|| -+|=|-.-|-.++.|-.
T Consensus 280 ~-P~~-~~v~gtn~~~ig-----~~~~~~~l~~~~~~DNL~KGAAgqAVQ~~nlm~g 329 (337)
T 3dr3_A 280 V-PAL-KNVVGLPFCDIG-----FAVQGEHLIIVATEDNLLKGAAAQAVQCANIRFG 329 (337)
T ss_dssp C-CCG-GGTTTSSCEEEE-----EEEETTEEEEEEEECTTTTTTHHHHHHHHHHHHT
T ss_pred C-CCH-HHhCCCCcEEEE-----EEEeCCEEEEEEEechHHHHHHHHHHHHHHHHhC
Confidence 1 322 245554433221 1111456778888999 67888888888777754
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-33 Score=277.54 Aligned_cols=299 Identities=14% Similarity=0.060 Sum_probs=208.8
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCC-CC--CceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRK-DS--PLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~-~~--~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
++||+|+| +|+||+.++|.|.+++ -+ .+++++++...+... ++++.|++|.+..+ +.+
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk-----~~~~~~~~l~~~~~-------------~~~ 70 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGS-----TLGEHHPHLTPLAH-------------RVV 70 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTS-----BGGGTCTTCGGGTT-------------CBC
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCC-----chhhhcccccccce-------------eee
Confidence 47999999 9999999999998764 00 489999986422211 24666776653111 111
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCC-CC-C--------------CeEEeec--Cc
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK-GD-I--------------PTYVVGV--NA 205 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapsk-d~-~--------------ptvV~gV--N~ 205 (416)
.. .+++. |. ++|+||+|+|.+.+++.++.+ ++|++.|.+|++.. ++ . |..|+++ |.
T Consensus 71 ~~-~~~~~--~~--~~DvVf~alg~~~s~~~~~~~-~~G~~vIDlSa~~R~~~~~~~~~~y~~~h~~~~vyglPEv~~n~ 144 (352)
T 2nqt_A 71 EP-TEAAV--LG--GHDAVFLALPHGHSAVLAQQL-SPETLIIDCGADFRLTDAAVWERFYGSSHAGSWPYGLPELPGAR 144 (352)
T ss_dssp EE-CCHHH--HT--TCSEEEECCTTSCCHHHHHHS-CTTSEEEECSSTTTCSCHHHHHHHHSSCCCCCCCBSCTTSTTHH
T ss_pred cc-CCHHH--hc--CCCEEEECCCCcchHHHHHHH-hCCCEEEEECCCccCCcchhhhhhccccCCCCeeEEecccccCH
Confidence 11 12222 43 899999999999999999999 99986555566653 22 2 6677777 99
Q ss_pred cCCCCCCCeEecCCcchhhhHHHHHHHHHHhhhhcccccccccccee-EEEEEeecccccc-hhhhccchhHHHhhhccc
Q 014890 206 DAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGII-KGTMTTTHSYTGD-QRLLDASHRDLRRARAAA 283 (416)
Q Consensus 206 ~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~-~~~mTTiHa~T~~-Q~~lD~~~~d~rr~Raaa 283 (416)
+.++ ..+|||||+|+|+|+++.|++|+++| +|+ +++|+|+|++||+ |+.+|..|.+.++.+..+
T Consensus 145 ~~i~-~~~iIanPgC~tt~~~lal~PL~~~~-------------~i~~~i~v~t~~g~SGaG~~~~~~~~~~~~~~~~~a 210 (352)
T 2nqt_A 145 DQLR-GTRRIAVPGCYPTAALLALFPALAAD-------------LIEPAVTVVAVSGTSGAGRAATTDLLGAEVIGSARA 210 (352)
T ss_dssp HHHT-TCSEEECCCHHHHHHHHHHHHHHHTT-------------CSCSEEEEEEEECGGGGCSSCCGGGSHHHHTTCCEE
T ss_pred HHHh-cCCEEEcCCHHHHHHHHHHHHHHHcC-------------CCcceEEEEEEeccccCCccccccccHHHHhhhccc
Confidence 9887 36899999999999999999999999 999 9999999999999 999998888899888899
Q ss_pred cccccCCCChHHHH----HHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccc-cCCCcccccC
Q 014890 284 LNIVPTSTGAAKAV----ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN-ELKGILSVCD 358 (416)
Q Consensus 284 ~NIIPt~tGaakav----~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~-~lkgil~~~~ 358 (416)
+|++|+.. +..++ .|++. .+++++++++|||+++||+++++++++++ .|||+++|+++-++ ++=-++.-.+
T Consensus 211 y~~~~~h~-h~pEi~~e~~ki~~-~~~~v~ft~~rvP~~rG~~~ti~~~l~~~--~~ei~~~~~~~y~~~~~V~v~~~~~ 286 (352)
T 2nqt_A 211 YNIAGVHR-HTPEIAQGLRAVTD-RDVSVSFTPVLIPASRGILATCTARTRSP--LSQLRAAYEKAYHAEPFIYLMPEGQ 286 (352)
T ss_dssp CSTTTTST-THHHHHHHHHTTCS-SCCEEEEEEEECSCSSCEEEEEEEECCSC--HHHHHHHHHHHHTTCTTEEECCTTC
T ss_pred ccCCCcce-ecHHHHHHHHHHhC-CCCCEEEEEEEEccccEEEEEEEEEECCC--HHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 99998321 12222 34443 26789999999999999999999999988 99999999986332 2211221111
Q ss_pred CCeeeeccCCCCcceeeeCCCCcccCCceEEEEEEecCC-cchhhhHhHHHHHHh
Q 014890 359 EPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE-WGYSQRVVDLADIVA 412 (416)
Q Consensus 359 ~p~VS~Df~g~~~S~i~D~~~t~v~~~~~vK~~~WyDNE-~gys~R~vdl~~~~~ 412 (416)
-|-. .+..|..+-.| ....-..++.+.+++=-||= +|=|-.-|-.++.|.
T Consensus 287 ~p~~-~~v~g~n~~~i---g~~~d~~~~~l~~~~~~DNL~KGAAg~AVQ~~nl~~ 337 (352)
T 2nqt_A 287 LPRT-GAVIGSNAAHI---AVAVDEDAQTFVAIAAIDNLVKGTAGAAVQSMNLAL 337 (352)
T ss_dssp CCCG-GGTTTSSCEEE---EEEEETTTTEEEEEEEECTTTTTTHHHHHHHHHHHH
T ss_pred CcCh-HHhcCCcEEEE---EEEEeCCCCEEEEEEEEcchhHhHHHHHHHHHHHHh
Confidence 1211 24444332222 10000122446666667884 566666666666554
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-33 Score=281.81 Aligned_cols=240 Identities=23% Similarity=0.279 Sum_probs=177.5
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec---CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEE
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND---TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQ 142 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd---~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~ 142 (416)
+++||||.| +|-+|+.++|.|.+++ .++|+.+-. ..+-. +... | +|... ..|..+++.+.
T Consensus 18 ~~~kVaIvGAtG~vG~ell~lL~~hp--~~el~~l~aS~~saGk~-~~~~------~-~~~~~------~~~p~~~~~~~ 81 (381)
T 3hsk_A 18 SVKKAGVLGATGSVGQRFILLLSKHP--EFEIHALGASSRSAGKK-YKDA------A-SWKQT------ETLPETEQDIV 81 (381)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCS--SEEEEEEEECTTTTTSB-HHHH------C-CCCCS------SCCCHHHHTCB
T ss_pred CccEEEEECCCChHHHHHHHHHHcCC--CceEEEeeccccccCCC-HHHh------c-ccccc------cccccccccce
Confidence 468999999 9999999999888875 489877732 11111 1111 0 11000 00000001122
Q ss_pred EEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCC---------
Q 014890 143 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYK--------- 209 (416)
Q Consensus 143 v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~--------- 209 (416)
+. +-++.+ .| .++|+||+|+|.+.+++.++.|+++|++ ||+.++ ++++|++|++||++.|.
T Consensus 82 v~-~~~~~~-~~--~~~Dvvf~alp~~~s~~~~~~~~~~G~~--VIDlSa~fR~~~~vplvv~~vn~~~~~l~E~~r~~~ 155 (381)
T 3hsk_A 82 VQ-ECKPEG-NF--LECDVVFSGLDADVAGDIEKSFVEAGLA--VVSNAKNYRREKDVPLVVPIVNPEHIDVVENKVKQA 155 (381)
T ss_dssp CE-ESSSCT-TG--GGCSEEEECCCHHHHHHHHHHHHHTTCE--EEECCSTTTTCTTSCEECTTTCGGGGHHHHHHHHHH
T ss_pred EE-eCchhh-hc--ccCCEEEECCChhHHHHHHHHHHhCCCE--EEEcCCcccCCCCCcEEecccCHHHcCCHhhhhhhh
Confidence 21 122321 23 3899999999999999999999999994 555544 34689999999999875
Q ss_pred ------CCCCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccc-eeEEEEEeecccccchhh-hccchhHHHhhhc
Q 014890 210 ------PDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAG-IIKGTMTTTHSYTGDQRL-LDASHRDLRRARA 281 (416)
Q Consensus 210 ------~~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~G-I~~~~mTTiHa~T~~Q~~-lD~~~~d~rr~Ra 281 (416)
+..+||+||+|+|+|+++.|++|+++| | |+++.|+|+|+|||+++. .... +.
T Consensus 156 ~~~~~i~~~~iIaNPgC~tt~~~laL~PL~~~~-------------glI~~v~v~t~~gvSGAG~~~~~~~-------~~ 215 (381)
T 3hsk_A 156 VSKGGKKPGFIICISNCSTAGLVAPLKPLVEKF-------------GPIDALTTTTLQAISGAGFSPGVSG-------MD 215 (381)
T ss_dssp HHTTCCCCCEEEEECCHHHHHHHHHHHHHHHHH-------------CCEEEEEEEEEBCCCC------CCH-------HH
T ss_pred cccccccCCcEEECCCcHHHHHHHHHHHHHHhc-------------CCceEEEEEEeeccCCCCccCCcch-------hh
Confidence 234699999999999999999999999 9 999999999999999862 2211 35
Q ss_pred cccccccCCCCh-HHH---HHHHcccccC-------------CeeeEEEeeCcccceEEEEEEEEcc--CCCHHHHHHHH
Q 014890 282 AALNIVPTSTGA-AKA---VALVLPALKG-------------KLNGIALRVPTPNVSVVDLVVQVSK--KTFAEEVNAAF 342 (416)
Q Consensus 282 aa~NIIPt~tGa-aka---v~kVlPeL~g-------------kl~g~avRVPt~~vs~vdl~v~l~k--~vs~eeV~~a~ 342 (416)
++.|++|..++. .|. +.++|+.++| +++++|+|||+++||++++++++++ +++.|||+++|
T Consensus 216 ~~~N~~Py~~~~e~k~~~Ei~kiL~~l~~~~~~~~~~~~~~~~v~ft~~rVPv~rG~~~tv~v~l~~~~~~t~eei~~~l 295 (381)
T 3hsk_A 216 ILDNIVPYISGEEDKLEWETKKILGGVNAEGTEFVPIPESEMKVSAQCNRVPVIDGHTECISLRFANRPAPSVEDVKQCL 295 (381)
T ss_dssp HTTCCBCCCTTHHHHHHHHHHHHTCEECTTSSSEECCCTTTCEEEEECCBCSCSSCCEEEEEEEESSSSCCCHHHHHHHH
T ss_pred hhcChhhcccchHHHHHHHHHHHhhhcccccccccccccCCCceEEEEEEeceeccEEEEEEEEeCCCCCCCHHHHHHHH
Confidence 789999999876 344 5678888776 8999999999999999999999999 99999999999
Q ss_pred Hhcccc
Q 014890 343 RESADN 348 (416)
Q Consensus 343 ~~aa~~ 348 (416)
+++..+
T Consensus 296 ~~~y~~ 301 (381)
T 3hsk_A 296 REYECA 301 (381)
T ss_dssp HHCBCH
T ss_pred HHhhcc
Confidence 998654
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-25 Score=221.98 Aligned_cols=228 Identities=12% Similarity=0.070 Sum_probs=169.6
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||.| +|.+|+.++|.|.+++ .++|+.+....... -+|+..|..|.. .+.+. +
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP--~~el~~l~S~~~aG-----~~~~~~~p~~~~---------------~l~~~-~ 69 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHP--EAKITYLSSRTYAG-----KKLEEIFPSTLE---------------NSILS-E 69 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCT--TEEEEEEECSTTTT-----SBHHHHCGGGCC---------------CCBCB-C
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCC--CcEEEEEeCccccc-----CChHHhChhhcc---------------CceEE-e
Confidence 59999999 9999999999999885 59999998631111 112333433321 11221 1
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCC---CC-C------------------CeEEeecC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK---GD-I------------------PTYVVGVN 204 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapsk---d~-~------------------ptvV~gVN 204 (416)
.+++++ | .++|+||.|+|...+++.++.+ +|+ +|||.++. ++ + |..++++|
T Consensus 70 ~~~~~~-~--~~~Dvvf~alp~~~s~~~~~~~--~g~--~VIDlSsdfRl~~~~~y~~~y~~~h~~p~~~~~~yglPE~n 142 (351)
T 1vkn_A 70 FDPEKV-S--KNCDVLFTALPAGASYDLVREL--KGV--KIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELH 142 (351)
T ss_dssp CCHHHH-H--HHCSEEEECCSTTHHHHHHTTC--CSC--EEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHH
T ss_pred CCHHHh-h--cCCCEEEECCCcHHHHHHHHHh--CCC--EEEECChhhhCCchhhhhhhcCCCCCchhhcCCceECCccC
Confidence 223222 2 3799999999999999999988 788 68999873 22 1 56667779
Q ss_pred ccCCCCCCCeEecCCcchhhhHHHHHHHHHHhhhhcccccccccccee--EEEEEeecccccchh-hhccchhHHHhhhc
Q 014890 205 ADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGII--KGTMTTTHSYTGDQR-LLDASHRDLRRARA 281 (416)
Q Consensus 205 ~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~--~~~mTTiHa~T~~Q~-~lD~~~~d~rr~Ra 281 (416)
.+.++. .+||+||+|+|+|+++.|+||++++ +|+ ++.++|+|++||..+ ..+..+...
T Consensus 143 ~e~i~~-a~iIANPgC~~t~~~laL~PL~~~~-------------~i~~~~iiv~t~sgvSGAG~~~~~~~~~~e----- 203 (351)
T 1vkn_A 143 REEIKN-AQVVGNPGCYPTSVILALAPALKHN-------------LVDPETILVDAKSGVSGAGRKEKVDYLFSE----- 203 (351)
T ss_dssp HHHHTT-CSEEECCCHHHHHHHHHHHHHHHTT-------------CSCCSEEEEEEEEEGGGGCSCCSGGGBHHH-----
T ss_pred HHHhcc-CCEEeCCChHHHHHHHHHHHHHHcC-------------CCCCCEEEEEEEeeccccCcccccccchhH-----
Confidence 998874 5899999999999999999999999 999 999999999999954 666554322
Q ss_pred cccccccCCCChHHHHHHHcccc------cCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcc
Q 014890 282 AALNIVPTSTGAAKAVALVLPAL------KGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 282 aa~NIIPt~tGaakav~kVlPeL------~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa 346 (416)
+..|+.|...+.-+.+..+..+| ..+++.+++|||+.+||+..++++++ ++.||++++|+++-
T Consensus 204 ~~~n~~~y~~~~h~h~pEi~~el~~i~~~~~~v~ftp~rvPv~rG~~~tv~v~l~--~~~eei~~~l~~~Y 272 (351)
T 1vkn_A 204 VNESLRPYNVAKHRHVPEMEQELGKISGKKVNVVFTPHLVPMTRGILSTIYVKTD--KSLEEIHEAYLEFY 272 (351)
T ss_dssp HTTCCEECSCSCCTHHHHHHHHHHHHHTSCCEEEEEEEEESSSSCEEEEEEEECS--SCHHHHHHHHHHHH
T ss_pred HhcccccCCccccccHHHHHHHHHHhhCCCCCEEEEEEEeccccEEEEEEEEEEc--CCHHHHHHHHHHhh
Confidence 24567776654323333333333 24699999999999999999999998 89999999999853
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=8.4e-08 Score=94.51 Aligned_cols=152 Identities=20% Similarity=0.188 Sum_probs=94.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhH-HhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQ-ASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~-~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||.|+|.||+.+++.+.++ .+.++++++-|. +++. ...+. ..||. .. + .
T Consensus 4 ~irVaIIG~G~iG~~~~~~l~~~-~~~~elvav~d~-~~~~~~~~~a---~~~g~---~~---------~---------~ 57 (312)
T 1nvm_B 4 KLKVAIIGSGNIGTDLMIKVLRN-AKYLEMGAMVGI-DAASDGLARA---QRMGV---TT---------T---------Y 57 (312)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHH-CSSEEEEEEECS-CTTCHHHHHH---HHTTC---CE---------E---------S
T ss_pred CCEEEEEcCcHHHHHHHHHHHhh-CcCeEEEEEEeC-ChhhhHHHHH---HHcCC---Cc---------c---------c
Confidence 58999999999999999999762 134999999986 2222 11111 01221 00 0 0
Q ss_pred cCCCCC-CC-CCccccEEEcCCCCCCCHhhHHHHHHc--CCCEEEEcCCCCCCCCeEEeecCccCCCCC--CCeEecCCc
Q 014890 147 RNPVNL-PW-GDLGIDLVIEGTGVFVDREGAGKHIQA--GAKKVLITAPGKGDIPTYVVGVNADAYKPD--EPIISNASC 220 (416)
Q Consensus 147 ~~p~~i-~W-~~~gvDiVie~TG~f~s~~~a~~hl~a--GAkkVIIsapskd~~ptvV~gVN~~~y~~~--~~IISnaSC 220 (416)
.+.+++ .- ...++|+|++|||.....+.+...+++ |. .|+.-.|.. -.|..++.+|.+..... ..+++++.|
T Consensus 58 ~~~e~ll~~~~~~~iDvV~~atp~~~h~~~a~~al~a~~Gk-~Vi~ekp~~-~g~~~~p~v~~~~~~~~~~~~lva~~g~ 135 (312)
T 1nvm_B 58 AGVEGLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGI-RLIDLTPAA-IGPYCVPVVNLEEHLGKLNVNMVTCGGQ 135 (312)
T ss_dssp SHHHHHHHSGGGGGEEEEEECSCHHHHHHHHHHHHHHCTTC-EEEECSTTC-SSCBCCHHHHTTTTTTCSEEECCCHHHH
T ss_pred CCHHHHHhccCCCCCcEEEECCChHHHHHHHHHHHHhCCCC-EEEEcCccc-ccccccCccCHHHHHhccCCcEEEeCCc
Confidence 011111 00 013799999999999899999999999 86 344434432 24667778888775321 257777666
Q ss_pred chhhhHHHHHHHHHHhhhhccccccccccceeEE-EEEeecccc
Q 014890 221 TTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKG-TMTTTHSYT 263 (416)
Q Consensus 221 TTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~-~mTTiHa~T 263 (416)
. ..|++..+.+.| ..... .+.++.+.+
T Consensus 136 ~---~ipl~~a~~~~~-------------~~~~~~iv~~i~sgs 163 (312)
T 1nvm_B 136 A---TIPMVAAVSRVA-------------KVHYAEIVASISSKS 163 (312)
T ss_dssp H---HHHHHHHHHTTS-------------CEEEEEEEEEEEGGG
T ss_pred c---cchHHHHhhhhc-------------cchhHhHhhhhhccc
Confidence 4 578888887777 44322 566776655
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=2e-05 Score=77.11 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=63.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||+|+|++|+.+++.+.+.+ ++++|++-|....+. + . -| +.+ ..
T Consensus 3 ~irV~IiG~G~mG~~~~~~l~~~~--~~elvav~d~~~~~~----~----------------~------~g--v~~--~~ 50 (320)
T 1f06_A 3 NIRVAIVGYGNLGRSVEKLIAKQP--DMDLVGIFSRRATLD----T----------------K------TP--VFD--VA 50 (320)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCS--SEEEEEEEESSSCCS----S----------------S------SC--EEE--GG
T ss_pred CCEEEEEeecHHHHHHHHHHhcCC--CCEEEEEEcCCHHHh----h----------------c------CC--Cce--eC
Confidence 689999999999999999988754 499999987521110 0 0 01 122 13
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
+.+++- .++|+|++||+.....+.+...+++|. .||++.|.
T Consensus 51 d~~~ll---~~~DvViiatp~~~h~~~~~~al~aG~-~Vv~ekp~ 91 (320)
T 1f06_A 51 DVDKHA---DDVDVLFLCMGSATDIPEQAPKFAQFA-CTVDTYDN 91 (320)
T ss_dssp GGGGTT---TTCSEEEECSCTTTHHHHHHHHHTTTS-EEECCCCC
T ss_pred CHHHHh---cCCCEEEEcCCcHHHHHHHHHHHHCCC-EEEECCCC
Confidence 333332 378999999999988888999999985 67776664
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.73 E-value=3.3e-05 Score=75.04 Aligned_cols=99 Identities=22% Similarity=0.222 Sum_probs=67.3
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++||||.|+|.||+..++.+...+..+++|+||-|. +++.+..+.+ .||.- + ++
T Consensus 1 M~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~-~~~~a~~~a~---~~~~~----~---------------~~-- 55 (334)
T 3ohs_X 1 MALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAAR-DLSRAKEFAQ---KHDIP----K---------------AY-- 55 (334)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECS-SHHHHHHHHH---HHTCS----C---------------EE--
T ss_pred CccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcC-CHHHHHHHHH---HcCCC----c---------------cc--
Confidence 6799999999999999999887654335899999886 4443332221 12210 0 00
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+-||+.....+.+...+++| |.|++--|-
T Consensus 56 ~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~~G-khVl~EKP~ 99 (334)
T 3ohs_X 56 GSYEEL-AKDPNVEVAYVGTQHPQHKAAVMLCLAAG-KAVLCEKPM 99 (334)
T ss_dssp SSHHHH-HHCTTCCEEEECCCGGGHHHHHHHHHHTT-CEEEEESSS
T ss_pred CCHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEECCC
Confidence 111111 01236899999999999999999999999 678887664
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.67 E-value=9e-05 Score=71.78 Aligned_cols=95 Identities=22% Similarity=0.261 Sum_probs=66.5
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++||||.|+|.||+..++.+...+ +++|++|-|. +++.+..+.+ .||. + +
T Consensus 2 m~~~vgiiG~G~~g~~~~~~l~~~~--~~~l~av~d~-~~~~~~~~~~---~~~~------------------~---~-- 52 (331)
T 4hkt_A 2 MTVRFGLLGAGRIGKVHAKAVSGNA--DARLVAVADA-FPAAAEAIAG---AYGC------------------E---V-- 52 (331)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHCT--TEEEEEEECS-SHHHHHHHHH---HTTC------------------E---E--
T ss_pred CceEEEEECCCHHHHHHHHHHhhCC--CcEEEEEECC-CHHHHHHHHH---HhCC------------------C---c--
Confidence 6799999999999999999988764 4999999886 4444333221 0110 0 0
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+++++ ..+.++|+|+-||+.....+.+...+++| |.|++-.|.
T Consensus 53 ~~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~g-k~v~~EKP~ 96 (331)
T 4hkt_A 53 RTIDAI-EAAADIDAVVICTPTDTHADLIERFARAG-KAIFCEKPI 96 (331)
T ss_dssp CCHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSCS
T ss_pred CCHHHH-hcCCCCCEEEEeCCchhHHHHHHHHHHcC-CcEEEecCC
Confidence 111111 01226899999999999999999999999 678887663
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.65 E-value=9.1e-05 Score=71.97 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=60.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||+|+|+||+.+++.+...+ +++|++|-|. +++.+.. +|. +.. ...
T Consensus 9 ~irv~IIG~G~iG~~~~~~l~~~~--~~elvav~d~-~~~~~~~-------~g~------------------~~~--~~~ 58 (304)
T 3bio_A 9 KIRAAIVGYGNIGRYALQALREAP--DFEIAGIVRR-NPAEVPF-------ELQ------------------PFR--VVS 58 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCT--TEEEEEEECC---------------CCT------------------TSC--EES
T ss_pred CCEEEEECChHHHHHHHHHHhcCC--CCEEEEEEcC-CHHHHHH-------cCC------------------CcC--CHH
Confidence 689999999999999999988754 4999999875 2322110 110 000 011
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
+..+. .++|+|+.||+.....+.+...+++|. .||+..|
T Consensus 59 ~l~~~----~~~DvViiatp~~~h~~~~~~al~aG~-~Vi~ekP 97 (304)
T 3bio_A 59 DIEQL----ESVDVALVCSPSREVERTALEILKKGI-CTADSFD 97 (304)
T ss_dssp SGGGS----SSCCEEEECSCHHHHHHHHHHHHTTTC-EEEECCC
T ss_pred HHHhC----CCCCEEEECCCchhhHHHHHHHHHcCC-eEEECCC
Confidence 22222 378999999999999999999999985 5655433
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.58 E-value=6.3e-05 Score=73.38 Aligned_cols=97 Identities=23% Similarity=0.280 Sum_probs=66.4
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++||||+|+|.||+..++.+...+ ++++++|-|. +++.+..+.+ .||. .+ ++
T Consensus 1 M~~rvgiIG~G~~g~~~~~~l~~~~--~~~l~av~d~-~~~~~~~~~~---~~~~----~~---------------~~-- 53 (344)
T 3ezy_A 1 MSLRIGVIGLGRIGTIHAENLKMID--DAILYAISDV-REDRLREMKE---KLGV----EK---------------AY-- 53 (344)
T ss_dssp -CEEEEEECCSHHHHHHHHHGGGST--TEEEEEEECS-CHHHHHHHHH---HHTC----SE---------------EE--
T ss_pred CeeEEEEEcCCHHHHHHHHHHHhCC--CcEEEEEECC-CHHHHHHHHH---HhCC----Cc---------------ee--
Confidence 6789999999999999999887753 4999999886 4444333221 1211 00 11
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+-||+.....+.+...+++| |.|++--|.
T Consensus 54 ~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~g-k~v~~EKP~ 97 (344)
T 3ezy_A 54 KDPHEL-IEDPNVDAVLVCSSTNTHSELVIACAKAK-KHVFCEKPL 97 (344)
T ss_dssp SSHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEESCS
T ss_pred CCHHHH-hcCCCCCEEEEcCCCcchHHHHHHHHhcC-CeEEEECCC
Confidence 112111 01237899999999999999999999999 578887773
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00014 Score=70.89 Aligned_cols=99 Identities=23% Similarity=0.305 Sum_probs=67.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++||||+|+|.||+..++.+..+. ++++|++|-|. +++.+..+.+ .||. .++ ++
T Consensus 1 M~~rigiIG~G~~g~~~~~~l~~~~-~~~~l~av~d~-~~~~~~~~~~---~~g~---~~~---------------~~-- 55 (344)
T 3mz0_A 1 MSLRIGVIGTGAIGKEHINRITNKL-SGAEIVAVTDV-NQEAAQKVVE---QYQL---NAT---------------VY-- 55 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTC-SSEEEEEEECS-SHHHHHHHHH---HTTC---CCE---------------EE--
T ss_pred CeEEEEEECccHHHHHHHHHHHhhC-CCcEEEEEEcC-CHHHHHHHHH---HhCC---CCe---------------ee--
Confidence 6789999999999999999988331 34999999886 4443332221 1221 001 11
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+++++ ..+.++|+|+-||+.....+.+...+++| |.|++--|.
T Consensus 56 ~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~G-k~vl~EKP~ 99 (344)
T 3mz0_A 56 PNDDSL-LADENVDAVLVTSWGPAHESSVLKAIKAQ-KYVFCEKPL 99 (344)
T ss_dssp SSHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSCS
T ss_pred CCHHHH-hcCCCCCEEEECCCchhHHHHHHHHHHCC-CcEEEcCCC
Confidence 112111 01236899999999999999999999999 678887663
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00017 Score=70.73 Aligned_cols=96 Identities=26% Similarity=0.254 Sum_probs=64.2
Q ss_pred cceeEEEEccChhHH-HHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAINGFGRIGR-NFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaINGfGrIGR-~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
|++||||.|+|.||+ ..++.+... ++++|++|-|....+.++.. +|... + +++
T Consensus 1 M~~rvgiiG~G~~g~~~~~~~l~~~--~~~~l~av~d~~~~~~~a~~------~~~~~--~---------------~~~- 54 (349)
T 3i23_A 1 MTVKMGFIGFGKSANRYHLPYVMIR--ETLEVKTIFDLHVNEKAAAP------FKEKG--V---------------NFT- 54 (349)
T ss_dssp CCEEEEEECCSHHHHHTTHHHHTTC--TTEEEEEEECTTCCHHHHHH------HHTTT--C---------------EEE-
T ss_pred CeeEEEEEccCHHHHHHHHHHHhhC--CCeEEEEEECCCHHHHHHHh------hCCCC--C---------------eEE-
Confidence 779999999999998 566766554 35999999986322222211 11100 1 111
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
.+.+++- .+.++|+|+-||+.....+.+...+++| |.|++--|
T Consensus 55 -~~~~~ll-~~~~~D~V~i~tp~~~h~~~~~~al~aG-k~Vl~EKP 97 (349)
T 3i23_A 55 -ADLNELL-TDPEIELITICTPAHTHYDLAKQAILAG-KSVIVEKP 97 (349)
T ss_dssp -SCTHHHH-SCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSC
T ss_pred -CCHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHHcC-CEEEEECC
Confidence 2232221 1236899999999999999999999999 67888655
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00027 Score=69.22 Aligned_cols=92 Identities=26% Similarity=0.360 Sum_probs=64.1
Q ss_pred ceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||+|+|+||+. .++++...+ +++||||-|. +++.+. -+ + .+ ++ ++
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~--~~~l~av~d~-~~~~~~--~~----~---~~-~~---------------~~-- 56 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTP--GLELAGVSSS-DASKVH--AD----W---PA-IP---------------VV-- 56 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTST--TEEEEEEECS-CHHHHH--TT----C---SS-CC---------------EE--
T ss_pred CceEEEECCCHHHHHHHHHHHhhCC--CcEEEEEECC-CHHHHH--hh----C---CC-Cc---------------eE--
Confidence 589999999999997 778776653 4999999986 444332 11 1 00 11 11
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
.+.+++- .+.++|+|+-||+.....+.+...+++| |.|++--|
T Consensus 57 ~~~~~ll-~~~~vD~V~i~tp~~~H~~~~~~al~aG-khV~~EKP 99 (352)
T 3kux_A 57 SDPQMLF-NDPSIDLIVIPTPNDTHFPLAQSALAAG-KHVVVDKP 99 (352)
T ss_dssp SCHHHHH-HCSSCCEEEECSCTTTHHHHHHHHHHTT-CEEEECSS
T ss_pred CCHHHHh-cCCCCCEEEEeCChHHHHHHHHHHHHCC-CcEEEECC
Confidence 1122210 1236899999999999999999999999 67888766
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00022 Score=70.22 Aligned_cols=100 Identities=28% Similarity=0.297 Sum_probs=66.2
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
+|++||||+|+|.||+..++.+..+. +.++|++|-|. +++.+..+.+ .||. .++ ++
T Consensus 21 m~~~rvgiIG~G~~g~~~~~~l~~~~-~~~~lvav~d~-~~~~~~~~a~---~~g~---~~~---------------~~- 76 (357)
T 3ec7_A 21 GMTLKAGIVGIGMIGSDHLRRLANTV-SGVEVVAVCDI-VAGRAQAALD---KYAI---EAK---------------DY- 76 (357)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTC-TTEEEEEEECS-STTHHHHHHH---HHTC---CCE---------------EE-
T ss_pred CCeeeEEEECCcHHHHHHHHHHHhhC-CCcEEEEEEeC-CHHHHHHHHH---HhCC---CCe---------------ee-
Confidence 35799999999999999999988331 34999999886 3332222211 1221 001 11
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+-||+.....+.+...+++| |.|++--|-
T Consensus 77 -~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aG-k~Vl~EKPl 120 (357)
T 3ec7_A 77 -NDYHDL-INDKDVEVVIITASNEAHADVAVAALNAN-KYVFCEKPL 120 (357)
T ss_dssp -SSHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEESSS
T ss_pred -CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CCEEeecCc
Confidence 112111 01236899999999999999999999999 678887674
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00028 Score=68.66 Aligned_cols=95 Identities=24% Similarity=0.335 Sum_probs=66.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||.|+|.||+..++.+...+ +++|++|-|. +++.+..+.+ .|| ++ ++ .
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~--~~~l~av~d~-~~~~~~~~a~---~~g-----~~---------------~~--~ 55 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANP--DLELVVIADP-FIEGAQRLAE---ANG-----AE---------------AV--A 55 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCT--TEEEEEEECS-SHHHHHHHHH---TTT-----CE---------------EE--S
T ss_pred ceEEEEECCcHHHHHHHHHHHhCC--CcEEEEEECC-CHHHHHHHHH---HcC-----Cc---------------ee--C
Confidence 589999999999999999988764 4999999886 4443333221 111 11 11 1
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
+++++ ..+.++|+|+-||+.....+.+...+++| |.|++..|.
T Consensus 56 ~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~g-k~v~~EKP~ 98 (344)
T 3euw_A 56 SPDEV-FARDDIDGIVIGSPTSTHVDLITRAVERG-IPALCEKPI 98 (344)
T ss_dssp SHHHH-TTCSCCCEEEECSCGGGHHHHHHHHHHTT-CCEEECSCS
T ss_pred CHHHH-hcCCCCCEEEEeCCchhhHHHHHHHHHcC-CcEEEECCC
Confidence 22221 12237899999999999999999999999 568887663
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00033 Score=68.97 Aligned_cols=93 Identities=26% Similarity=0.284 Sum_probs=64.4
Q ss_pred ceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||+|+|.||+. .++.+... ++++|+||-|. +++.++.. |. .++ ++
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~--~~~~l~av~d~-~~~~~~~~--~~--------~~~---------------~~-- 54 (358)
T 3gdo_A 5 TIKVGILGYGLSGSVFHGPLLDVL--DEYQISKIMTS-RTEEVKRD--FP--------DAE---------------VV-- 54 (358)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTC--TTEEEEEEECS-CHHHHHHH--CT--------TSE---------------EE--
T ss_pred cceEEEEccCHHHHHHHHHHHhhC--CCeEEEEEEcC-CHHHHHhh--CC--------CCc---------------eE--
Confidence 589999999999997 67776554 35999999986 44432211 11 011 11
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+-||+.....+.+...+++| |.|++--|-
T Consensus 55 ~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKPl 98 (358)
T 3gdo_A 55 HELEEI-TNDPAIELVIVTTPSGLHYEHTMACIQAG-KHVVMEKPM 98 (358)
T ss_dssp SSTHHH-HTCTTCCEEEECSCTTTHHHHHHHHHHTT-CEEEEESSC
T ss_pred CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHcC-CeEEEecCC
Confidence 222222 12237899999999999999999999999 678886663
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0003 Score=72.75 Aligned_cols=94 Identities=23% Similarity=0.328 Sum_probs=61.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhC-------CCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGR-------KDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKV 140 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~-------~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~ 140 (416)
++||||.|+|.||+.+++.+.++ ...+++|++|-|. +.+....++ +. ..
T Consensus 10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~-~~~~~~~~~--~~--------~~------------- 65 (444)
T 3mtj_A 10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVR-NLDKAEALA--GG--------LP------------- 65 (444)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECS-CHHHHHHHH--TT--------CC-------------
T ss_pred cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEEC-CHHHhhhhc--cc--------Cc-------------
Confidence 58999999999999999988642 1135999999986 333222111 10 00
Q ss_pred EEEEeccCCCCCCCCCccccEEEcCCCC-CCCHhhHHHHHHcCCCEEEEcCC
Q 014890 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGV-FVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 141 I~v~~~~~p~~i~W~~~gvDiVie~TG~-f~s~~~a~~hl~aGAkkVIIsap 191 (416)
++ .|++++ ..+.++|+|++|||. ....+.+...+++|. .|+...|
T Consensus 66 --~~--~d~~el-l~d~diDvVve~tp~~~~h~~~~~~AL~aGK-hVvtenk 111 (444)
T 3mtj_A 66 --LT--TNPFDV-VDDPEIDIVVELIGGLEPARELVMQAIANGK-HVVTANK 111 (444)
T ss_dssp --EE--SCTHHH-HTCTTCCEEEECCCSSTTHHHHHHHHHHTTC-EEEECCH
T ss_pred --cc--CCHHHH-hcCCCCCEEEEcCCCchHHHHHHHHHHHcCC-EEEECCc
Confidence 00 122221 122378999999996 778888999999995 5665555
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00042 Score=68.29 Aligned_cols=94 Identities=23% Similarity=0.279 Sum_probs=65.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||.|+|.||+..++.+...+ .++|++|-|. +++.+...-+ +|. + ++ .
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~--~~~l~av~d~-~~~~~~~a~~----~g~-----~---------------~~--~ 55 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAAD--NLEVHGVFDI-LAEKREAAAQ----KGL-----K---------------IY--E 55 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTST--TEEEEEEECS-SHHHHHHHHT----TTC-----C---------------BC--S
T ss_pred cCcEEEECcCHHHHHHHHHHHhCC--CcEEEEEEcC-CHHHHHHHHh----cCC-----c---------------ee--C
Confidence 589999999999999999887653 4999999886 4444322111 111 1 00 1
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
+.+++ ..+.++|+|+-||+.....+.+...+++| |.|++--|-
T Consensus 56 ~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aG-khVl~EKP~ 98 (359)
T 3e18_A 56 SYEAV-LADEKVDAVLIATPNDSHKELAISALEAG-KHVVCEKPV 98 (359)
T ss_dssp CHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEESSC
T ss_pred CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CCEEeeCCC
Confidence 11111 01237899999999999999999999999 578887664
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00032 Score=68.14 Aligned_cols=97 Identities=23% Similarity=0.192 Sum_probs=65.8
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+++||||.|+|.||+..++.+.+.+ +++|++|-|. +++.+..+.+ .||.- + + .
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~~--~~~l~av~d~-~~~~~~~~~~---~~~~~----~---------------~--~ 56 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRESA--QAEVRGIASR-RLENAQKMAK---ELAIP----V---------------A--Y 56 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHSS--SEEEEEEBCS-SSHHHHHHHH---HTTCC----C---------------C--B
T ss_pred CeEEEEEECchHHHHHHHHHHHhCC--CcEEEEEEeC-CHHHHHHHHH---HcCCC----c---------------e--e
Confidence 3689999999999999999998764 4999999886 3333322221 11110 0 0 0
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+-||+.....+.+...+++| |.|++--|.
T Consensus 57 ~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~g-k~vl~EKP~ 100 (330)
T 3e9m_A 57 GSYEEL-CKDETIDIIYIPTYNQGHYSAAKLALSQG-KPVLLEKPF 100 (330)
T ss_dssp SSHHHH-HHCTTCSEEEECCCGGGHHHHHHHHHHTT-CCEEECSSC
T ss_pred CCHHHH-hcCCCCCEEEEcCCCHHHHHHHHHHHHCC-CeEEEeCCC
Confidence 111111 01236899999999999999999999999 568887663
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00021 Score=70.18 Aligned_cols=95 Identities=22% Similarity=0.235 Sum_probs=65.5
Q ss_pred ceeEEEEccChhHH-HHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGR-NFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR-~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||+|+|.||+ .+++.+...+ +++|++|-|. +++.+..+.+ .|| +. ..
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~--~~~l~av~d~-~~~~~~~~a~---~~g-----~~---------------~~-- 78 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEP--LTEVTAIASR-RWDRAKRFTE---RFG-----GE---------------PV-- 78 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCT--TEEEEEEEES-SHHHHHHHHH---HHC-----SE---------------EE--
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCC--CeEEEEEEcC-CHHHHHHHHH---HcC-----CC---------------Cc--
Confidence 68999999999998 7889888754 4999999886 4443332221 111 01 11
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+-||+.....+.+...+++| |.|++--|-
T Consensus 79 ~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aG-k~Vl~EKP~ 122 (350)
T 3rc1_A 79 EGYPAL-LERDDVDAVYVPLPAVLHAEWIDRALRAG-KHVLAEKPL 122 (350)
T ss_dssp ESHHHH-HTCTTCSEEEECCCGGGHHHHHHHHHHTT-CEEEEESSS
T ss_pred CCHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHCC-CcEEEeCCC
Confidence 112221 11237899999999999999999999999 468886663
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00043 Score=68.37 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=63.9
Q ss_pred ceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||+|+|+||+. .++.+...+ +++|+||-|. +++.+.. +|. + ++ ++
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~l~~~~--~~~l~av~d~-~~~~~~~--~~~-------~-~~---------------~~-- 56 (364)
T 3e82_A 7 TINIALIGYGFVGKTFHAPLIRSVP--GLNLAFVASR-DEEKVKR--DLP-------D-VT---------------VI-- 56 (364)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTST--TEEEEEEECS-CHHHHHH--HCT-------T-SE---------------EE--
T ss_pred cceEEEECCCHHHHHHHHHHHhhCC--CeEEEEEEcC-CHHHHHh--hCC-------C-Cc---------------EE--
Confidence 589999999999996 677776653 4999999986 4443321 110 0 11 11
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++- .+.++|+|+-||+.....+.+...+++| |.|++--|-
T Consensus 57 ~~~~~ll-~~~~~D~V~i~tp~~~H~~~~~~al~aG-k~Vl~EKPl 100 (364)
T 3e82_A 57 ASPEAAV-QHPDVDLVVIASPNATHAPLARLALNAG-KHVVVDKPF 100 (364)
T ss_dssp SCHHHHH-TCTTCSEEEECSCGGGHHHHHHHHHHTT-CEEEECSCS
T ss_pred CCHHHHh-cCCCCCEEEEeCChHHHHHHHHHHHHCC-CcEEEeCCC
Confidence 1222210 1237899999999999999999999999 578876663
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00027 Score=69.05 Aligned_cols=97 Identities=24% Similarity=0.263 Sum_probs=62.1
Q ss_pred cceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
|++||||.|+|.||+. .++.++.. .++++|++|-|.. ++.....-+| . | ++++
T Consensus 1 m~~rvgiiG~G~~g~~~~~~~~~~~-~~~~~l~av~d~~-~~~~~~~~~~-------~--------------~--~~~~- 54 (345)
T 3f4l_A 1 MVINCAFIGFGKSTTRYHLPYVLNR-KDSWHVAHIFRRH-AKPEEQAPIY-------S--------------H--IHFT- 54 (345)
T ss_dssp -CEEEEEECCSHHHHHHTHHHHTTC-TTTEEEEEEECSS-CCGGGGSGGG-------T--------------T--CEEE-
T ss_pred CceEEEEEecCHHHHHHHHHHHHhc-CCCeEEEEEEcCC-HhHHHHHHhc-------C--------------C--CceE-
Confidence 6799999999999986 56634333 2459999999852 2211111111 0 1 0111
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+-||+.....+.+...+++| |.|++--|-
T Consensus 55 -~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aG-k~Vl~EKP~ 98 (345)
T 3f4l_A 55 -SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKPF 98 (345)
T ss_dssp -SCTHHH-HTCTTEEEEEECSCGGGHHHHHHHHHHTT-CEEEECSSS
T ss_pred -CCHHHH-hcCCCCCEEEEcCChHHHHHHHHHHHHcC-CcEEEeCCC
Confidence 223322 11236899999999999999999999999 678876654
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00019 Score=70.37 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=59.8
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
+++||+|+| +||+||.+++++.+.+ +++||++=|..+.+.. -.|. |.+.+ ... .| +.++
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~--~~eLvg~vd~~~~~~~----G~d~--gel~G----~~~-----~g--v~v~- 79 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRK--DVELCAVLVRKGSSFV----DKDA--SILIG----SDF-----LG--VRIT- 79 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCS--SEEEEEEBCCTTCTTT----TSBG--GGGTT----CSC-----CS--CBCB-
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCC--CCEEEEEEecCCcccc----ccch--HHhhc----cCc-----CC--ceee-
Confidence 368999999 9999999999998764 4999999875222110 0010 11000 000 01 1221
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
.|++++- .++|+|||+|......+.+...+++|.. |||
T Consensus 80 -~dl~~ll---~~aDVvIDFT~p~a~~~~~~~~l~~Gv~-vVi 117 (288)
T 3ijp_A 80 -DDPESAF---SNTEGILDFSQPQASVLYANYAAQKSLI-HII 117 (288)
T ss_dssp -SCHHHHT---TSCSEEEECSCHHHHHHHHHHHHHHTCE-EEE
T ss_pred -CCHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHcCCC-EEE
Confidence 2333321 2689999999876667777888889984 455
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00028 Score=68.45 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=63.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||.|+|+||+.+++.+...+ ++++++|-|. +++.+..+. ..||. . +++ .
T Consensus 5 ~~rigiiG~G~ig~~~~~~l~~~~--~~~~~av~d~-~~~~~~~~a---~~~~~---~----------------~~~--~ 57 (329)
T 3evn_A 5 KVRYGVVSTAKVAPRFIEGVRLAG--NGEVVAVSSR-TLESAQAFA---NKYHL---P----------------KAY--D 57 (329)
T ss_dssp CEEEEEEBCCTTHHHHHHHHHHHC--SEEEEEEECS-CSSTTCC------CCCC---S----------------CEE--S
T ss_pred ceEEEEEechHHHHHHHHHHHhCC--CcEEEEEEcC-CHHHHHHHH---HHcCC---C----------------ccc--C
Confidence 589999999999999999987653 4899999875 222111111 11110 0 011 1
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
+.+++- .+.++|+|+-||+.....+.+...+++| |.|++--|-
T Consensus 58 ~~~~ll-~~~~~D~V~i~tp~~~h~~~~~~al~aG-k~Vl~EKP~ 100 (329)
T 3evn_A 58 KLEDML-ADESIDVIYVATINQDHYKVAKAALLAG-KHVLVEKPF 100 (329)
T ss_dssp CHHHHH-TCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEESSC
T ss_pred CHHHHh-cCCCCCEEEECCCcHHHHHHHHHHHHCC-CeEEEccCC
Confidence 222211 1237899999999999999999999999 578887774
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00079 Score=66.95 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=58.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCC------CceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDS------PLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVI 141 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~------~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I 141 (416)
++||||.|+|.||+.+++.+.++++. +++|++|-|. +++.. .+ ++. .
T Consensus 3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~-~~~~~---------~~-~~~-------~--------- 55 (332)
T 2ejw_A 3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVR-DPRKP---------RA-IPQ-------E--------- 55 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECS-CTTSC---------CS-SCG-------G---------
T ss_pred eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEEC-CHHHh---------hc-cCc-------c---------
Confidence 58999999999999999999876410 4899999875 11100 00 000 0
Q ss_pred EEEeccCCCCCCCCCccccEEEcCCCCC-CCHhhHHHHHHcCCCEEEE
Q 014890 142 QVVSNRNPVNLPWGDLGIDLVIEGTGVF-VDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 142 ~v~~~~~p~~i~W~~~gvDiVie~TG~f-~s~~~a~~hl~aGAkkVII 188 (416)
.+ ..|++++- ++|+|+||||.. ...+.+...+++|. .||.
T Consensus 56 ~~--~~d~~~ll----~iDvVve~t~~~~~a~~~~~~AL~aGK-hVVt 96 (332)
T 2ejw_A 56 LL--RAEPFDLL----EADLVVEAMGGVEAPLRLVLPALEAGI-PLIT 96 (332)
T ss_dssp GE--ESSCCCCT----TCSEEEECCCCSHHHHHHHHHHHHTTC-CEEE
T ss_pred cc--cCCHHHHh----CCCEEEECCCCcHHHHHHHHHHHHcCC-eEEE
Confidence 01 13455543 799999999976 34577888999986 4444
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00029 Score=68.27 Aligned_cols=95 Identities=21% Similarity=0.210 Sum_probs=58.9
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||+|+| +|++||.+++++.+.+ +++||++=|....+. .|+--+++ .+ +. .| +.++
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~--~~eLv~~~d~~~~~~----------~G~d~gel---~g--~~-~g--v~v~-- 64 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAP--DATLVGALDRTGSPQ----------LGQDAGAF---LG--KQ-TG--VALT-- 64 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCT--TEEEEEEBCCTTCTT----------TTSBTTTT---TT--CC-CS--CBCB--
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCC--CCEEEEEEEecCccc----------ccccHHHH---hC--CC-CC--ceec--
Confidence 58999999 9999999999998864 499999876422111 01111110 00 00 01 1111
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
.+.+++ ..++|+|||+|......+.+...+++|.+ |||
T Consensus 65 ~dl~~l---l~~~DVVIDfT~p~a~~~~~~~al~~G~~-vVi 102 (272)
T 4f3y_A 65 DDIERV---CAEADYLIDFTLPEGTLVHLDAALRHDVK-LVI 102 (272)
T ss_dssp CCHHHH---HHHCSEEEECSCHHHHHHHHHHHHHHTCE-EEE
T ss_pred CCHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHcCCC-EEE
Confidence 222221 12679999999877777778888889984 556
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0004 Score=68.36 Aligned_cols=93 Identities=24% Similarity=0.298 Sum_probs=63.9
Q ss_pred ceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||+|+|+||+. .++.+...+ +++|+||-|. +++.++. .|+ .+ +++
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~--~~~l~av~d~-~~~~~~~------~~~----~~---------------~~~-- 54 (362)
T 3fhl_A 5 IIKTGLAAFGMSGQVFHAPFISTNP--HFELYKIVER-SKELSKE------RYP----QA---------------SIV-- 54 (362)
T ss_dssp CEEEEESCCSHHHHHTTHHHHHHCT--TEEEEEEECS-SCCGGGT------TCT----TS---------------EEE--
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCC--CeEEEEEEcC-CHHHHHH------hCC----CC---------------ceE--
Confidence 589999999999997 677776653 4999999986 2222110 010 01 111
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++- .+.++|+|+-||+.....+.+...+++| |.|++--|-
T Consensus 55 ~~~~~ll-~~~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKP~ 98 (362)
T 3fhl_A 55 RSFKELT-EDPEIDLIVVNTPDNTHYEYAGMALEAG-KNVVVEKPF 98 (362)
T ss_dssp SCSHHHH-TCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEESSC
T ss_pred CCHHHHh-cCCCCCEEEEeCChHHHHHHHHHHHHCC-CeEEEecCC
Confidence 2222221 1236899999999999999999999999 578886663
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00038 Score=67.44 Aligned_cols=95 Identities=22% Similarity=0.252 Sum_probs=63.2
Q ss_pred ceeEEEEccChhHHHHHHHHH-hCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~-~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||.|+|.||+..++.+. ..+ .+++|+|-|. +++.+..+.+ .+|. . + ++
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~~~--~~~~vav~d~-~~~~~~~~a~---~~g~---~-~---------------~~-- 60 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNKIQ--GVKLVAACAL-DSNQLEWAKN---ELGV---E-T---------------TY-- 60 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTCS--SEEEEEEECS-CHHHHHHHHH---TTCC---S-E---------------EE--
T ss_pred cceEEEEcCCHHHHHHHHHHHhcCC--CcEEEEEecC-CHHHHHHHHH---HhCC---C-c---------------cc--
Confidence 589999999999999999887 443 4899999886 4443322221 1111 0 1 11
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
.+.+++ ..+.++|+|+.||+.....+.+...+++| |.|++..|
T Consensus 61 ~~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~G-~~v~~eKp 103 (346)
T 3cea_A 61 TNYKDM-IDTENIDAIFIVAPTPFHPEMTIYAMNAG-LNVFCEKP 103 (346)
T ss_dssp SCHHHH-HTTSCCSEEEECSCGGGHHHHHHHHHHTT-CEEEECSC
T ss_pred CCHHHH-hcCCCCCEEEEeCChHhHHHHHHHHHHCC-CEEEEcCC
Confidence 112111 01136899999999999899999999999 56777444
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00053 Score=55.03 Aligned_cols=97 Identities=21% Similarity=0.250 Sum_probs=60.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++||+|.|.|.||+.+++.|..++ ..+|++++. +++.+..+... | +. +.....
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g--~~~v~~~~r--~~~~~~~~~~~----~-----~~-------------~~~~d~ 57 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSS--NYSVTVADH--DLAALAVLNRM----G-----VA-------------TKQVDA 57 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCS--SEEEEEEES--CHHHHHHHHTT----T-----CE-------------EEECCT
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCC--CceEEEEeC--CHHHHHHHHhC----C-----Cc-------------EEEecC
Confidence 4579999999999999999998864 267777664 33333332210 0 11 000001
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
.+++.+.-...++|+||.|+|.......+...++.|++.+.++
T Consensus 58 ~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~ 100 (118)
T 3ic5_A 58 KDEAGLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAHYFDLT 100 (118)
T ss_dssp TCHHHHHHHTTTCSEEEECSCGGGHHHHHHHHHHTTCEEECCC
T ss_pred CCHHHHHHHHcCCCEEEECCCchhhHHHHHHHHHhCCCEEEec
Confidence 1111111011378999999998888778888888999765544
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00041 Score=67.39 Aligned_cols=96 Identities=20% Similarity=0.187 Sum_probs=65.2
Q ss_pred ceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+|||||+|+|+||+. .++++...+ +++||||-|. +++.+..+.+ .||. . + ++
T Consensus 23 mirigiIG~G~ig~~~~~~~~~~~~--~~~lvav~d~-~~~~a~~~a~---~~g~---~-~---------------~y-- 75 (350)
T 4had_A 23 MLRFGIISTAKIGRDNVVPAIQDAE--NCVVTAIASR-DLTRAREMAD---RFSV---P-H---------------AF-- 75 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCS--SEEEEEEECS-SHHHHHHHHH---HHTC---S-E---------------EE--
T ss_pred ccEEEEEcChHHHHHHHHHHHHhCC--CeEEEEEECC-CHHHHHHHHH---HcCC---C-e---------------ee--
Confidence 489999999999986 577776654 4999999987 5544433221 1221 0 0 11
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+=||+...-.+.+...+++| |.|++--|-
T Consensus 76 ~d~~el-l~~~~iDaV~I~tP~~~H~~~~~~al~aG-khVl~EKPl 119 (350)
T 4had_A 76 GSYEEM-LASDVIDAVYIPLPTSQHIEWSIKAADAG-KHVVCEKPL 119 (350)
T ss_dssp SSHHHH-HHCSSCSEEEECSCGGGHHHHHHHHHHTT-CEEEECSCC
T ss_pred CCHHHH-hcCCCCCEEEEeCCCchhHHHHHHHHhcC-CEEEEeCCc
Confidence 111111 01237899999999999999999999999 578886664
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00078 Score=65.87 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=66.4
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++||||.|+|.||+..++.+...+ +++|++|-|. +++.+..+.+ .||. + . .
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~~--~~~lvav~d~-~~~~~~~~~~---~~g~-----~---------------~--~ 55 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKSE--KLKLVTCYSR-TEDKREKFGK---RYNC-----A---------------G--D 55 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCS--SEEEEEEECS-SHHHHHHHHH---HHTC-----C---------------C--C
T ss_pred CcceEEEEccCHHHHHHHHHHHhCC--CcEEEEEECC-CHHHHHHHHH---HcCC-----C---------------C--c
Confidence 4689999999999999999887653 4999999886 4444333221 1111 0 0 0
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+++++ ..+.++|+|+-||+.....+.+...+++| |.|++--|.
T Consensus 56 ~~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~g-k~vl~EKP~ 99 (354)
T 3db2_A 56 ATMEAL-LAREDVEMVIITVPNDKHAEVIEQCARSG-KHIYVEKPI 99 (354)
T ss_dssp SSHHHH-HHCSSCCEEEECSCTTSHHHHHHHHHHTT-CEEEEESSS
T ss_pred CCHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHcC-CEEEEccCC
Confidence 111111 01236899999999999999999999999 578887774
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00069 Score=68.76 Aligned_cols=102 Identities=22% Similarity=0.248 Sum_probs=67.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc-cccccccCCCceeeecCCeEEECCEEEEEEe-
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGTDGISVDGKVIQVVS- 145 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk-yDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~- 145 (416)
++||||.|+|.||+..++.+...+ .++||+|-|. +++.+..+.+ +. .||. + .+ +++.
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~--~~~lvav~d~-~~~~~~~~a~~~~-~~g~-~-~~---------------~~~~~ 78 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRD--DVEIVAFADP-DPYMVGRAQEILK-KNGK-K-PA---------------KVFGN 78 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCT--TEEEEEEECS-CHHHHHHHHHHHH-HTTC-C-CC---------------EEECS
T ss_pred CceEEEEecCHHHHHHHHHHHhCC--CcEEEEEEeC-CHHHHHHHHHHHH-hcCC-C-CC---------------ceecc
Confidence 689999999999999999887653 4999999986 4444333221 00 0110 0 01 1111
Q ss_pred -ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 146 -NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 146 -~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
..+.+++ ..+.++|+|+-||+.....+.+...+++|. .|++--|.
T Consensus 79 ~~~~~~~l-l~~~~vD~V~i~tp~~~h~~~~~~al~aGk-hV~~EKP~ 124 (444)
T 2ixa_A 79 GNDDYKNM-LKDKNIDAVFVSSPWEWHHEHGVAAMKAGK-IVGMEVSG 124 (444)
T ss_dssp STTTHHHH-TTCTTCCEEEECCCGGGHHHHHHHHHHTTC-EEEECCCC
T ss_pred CCCCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEeCCC
Confidence 1122222 122378999999999999999999999994 78776553
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00052 Score=67.34 Aligned_cols=99 Identities=18% Similarity=0.224 Sum_probs=65.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||+|+|.||+.+++.+...+ ++++++|-|. +++....+. ..||..+ .+ +++ .
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~~--~~~lv~v~d~-~~~~~~~~a---~~~~~~~-~~---------------~~~--~ 61 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLAP--NATISGVASR-SLEKAKAFA---TANNYPE-ST---------------KIH--G 61 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCT--TEEEEEEECS-SHHHHHHHH---HHTTCCT-TC---------------EEE--S
T ss_pred ceEEEEECchHHHHHHHHHHhhCC--CcEEEEEEcC-CHHHHHHHH---HHhCCCC-CC---------------eee--C
Confidence 589999999999999999988754 4999999886 444332222 1122100 01 111 1
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
+.+++ ..+.++|+|+.||+.....+.+...+++| |.|++--|.
T Consensus 62 ~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aG-k~V~~EKP~ 104 (362)
T 1ydw_A 62 SYESL-LEDPEIDALYVPLPTSLHVEWAIKAAEKG-KHILLEKPV 104 (362)
T ss_dssp SHHHH-HHCTTCCEEEECCCGGGHHHHHHHHHTTT-CEEEECSSC
T ss_pred CHHHH-hcCCCCCEEEEcCChHHHHHHHHHHHHCC-CeEEEecCC
Confidence 12111 01226899999999999999999999999 467775553
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00066 Score=65.29 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=61.6
Q ss_pred ceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||.|+|.||+. +++.+...+ ++++++|-|. +++....+.+ .+|. . + .
T Consensus 5 ~~~vgiiG~G~~g~~~~~~~l~~~~--~~~lvav~d~-~~~~~~~~~~---~~g~-----~---------------~--~ 56 (319)
T 1tlt_A 5 KLRIGVVGLGGIAQKAWLPVLAAAS--DWTLQGAWSP-TRAKALPICE---SWRI-----P---------------Y--A 56 (319)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCS--SEEEEEEECS-SCTTHHHHHH---HHTC-----C---------------B--C
T ss_pred cceEEEECCCHHHHHHHHHHHHhCC--CeEEEEEECC-CHHHHHHHHH---HcCC-----C---------------c--c
Confidence 589999999999996 888887653 4999999875 2222211110 1110 0 0 0
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+++.+ ..++|+|+.||+.....+.+...+++|. .|++..|.
T Consensus 57 ~~~~~l---~~~~D~V~i~tp~~~h~~~~~~al~~G~-~v~~eKP~ 98 (319)
T 1tlt_A 57 DSLSSL---AASCDAVFVHSSTASHFDVVSTLLNAGV-HVCVDKPL 98 (319)
T ss_dssp SSHHHH---HTTCSEEEECSCTTHHHHHHHHHHHTTC-EEEEESSS
T ss_pred CcHHHh---hcCCCEEEEeCCchhHHHHHHHHHHcCC-eEEEeCCC
Confidence 112222 2368999999999988899999999984 67775553
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00044 Score=66.55 Aligned_cols=94 Identities=20% Similarity=0.259 Sum_probs=65.1
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+++||||.|+|+||+.+++.+.+.+ .+++|+|-|. +++.+..+. +. ++++
T Consensus 9 ~~~~igiIG~G~~g~~~~~~l~~~~--~~~~v~v~d~-~~~~~~~~~-----------------~~--------~~~~-- 58 (315)
T 3c1a_A 9 SPVRLALIGAGRWGKNYIRTIAGLP--GAALVRLASS-NPDNLALVP-----------------PG--------CVIE-- 58 (315)
T ss_dssp CCEEEEEEECTTTTTTHHHHHHHCT--TEEEEEEEES-CHHHHTTCC-----------------TT--------CEEE--
T ss_pred CcceEEEECCcHHHHHHHHHHHhCC--CcEEEEEEeC-CHHHHHHHH-----------------hh--------Cccc--
Confidence 4689999999999999999998754 4899999886 343322111 11 1121
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+++++- .+.++|+|+.||+.....+.+...+++| |.|++..|.
T Consensus 59 ~~~~~~l-~~~~~D~V~i~tp~~~h~~~~~~al~~G-k~v~~eKP~ 102 (315)
T 3c1a_A 59 SDWRSVV-SAPEVEAVIIATPPATHAEITLAAIASG-KAVLVEKPL 102 (315)
T ss_dssp SSTHHHH-TCTTCCEEEEESCGGGHHHHHHHHHHTT-CEEEEESSS
T ss_pred CCHHHHh-hCCCCCEEEEeCChHHHHHHHHHHHHCC-CcEEEcCCC
Confidence 2232221 1237899999999999889999999999 467776554
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00058 Score=66.79 Aligned_cols=96 Identities=19% Similarity=0.239 Sum_probs=66.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||.|+|.||+..++.+.... +.+++|+|-|. +++.+..+.+ .|| + +++ .
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~-~~~~lvav~d~-~~~~~~~~~~---~~~-----~---------------~~~--~ 65 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHA-DRAELIDVCDI-DPAALKAAVE---RTG-----A---------------RGH--A 65 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTT-TTEEEEEEECS-SHHHHHHHHH---HHC-----C---------------EEE--S
T ss_pred cceEEEEcCcHHHHHHHHHHHhCC-CCeEEEEEEcC-CHHHHHHHHH---HcC-----C---------------cee--C
Confidence 689999999999999999988762 34999999886 4443333221 111 0 111 1
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
+++++ ..+.++|+|+-||+.....+.+...+++| |.|++-.|-
T Consensus 66 ~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~g-k~v~~EKP~ 108 (354)
T 3q2i_A 66 SLTDM-LAQTDADIVILTTPSGLHPTQSIECSEAG-FHVMTEKPM 108 (354)
T ss_dssp CHHHH-HHHCCCSEEEECSCGGGHHHHHHHHHHTT-CEEEECSSS
T ss_pred CHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHCC-CCEEEeCCC
Confidence 22221 11237899999999999999999999999 678886663
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00031 Score=70.11 Aligned_cols=98 Identities=21% Similarity=0.227 Sum_probs=66.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC------CCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK------DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVI 141 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~------~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I 141 (416)
++||||+|+|.||+.-++++.... .++++||||-|. +++.+..+.+ .||. . +
T Consensus 26 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~-~~~~a~~~a~---~~~~---~-~-------------- 83 (412)
T 4gqa_A 26 RLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQ-DQAMAERHAA---KLGA---E-K-------------- 83 (412)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECS-SHHHHHHHHH---HHTC---S-E--------------
T ss_pred cceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcC-CHHHHHHHHH---HcCC---C-e--------------
Confidence 699999999999999888876421 124799999987 4444433221 1221 0 1
Q ss_pred EEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 142 QVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 142 ~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
++ .|.+++ ..+.++|+|+=||+...-.+.+...+++| |.|++--|-
T Consensus 84 -~y--~d~~~l-l~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP~ 129 (412)
T 4gqa_A 84 -AY--GDWREL-VNDPQVDVVDITSPNHLHYTMAMAAIAAG-KHVYCEKPL 129 (412)
T ss_dssp -EE--SSHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEESCS
T ss_pred -EE--CCHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHcC-CCeEeecCC
Confidence 11 111111 11237899999999999999999999999 578887774
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0013 Score=65.11 Aligned_cols=36 Identities=25% Similarity=0.535 Sum_probs=30.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhC----CCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGR----KDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~----~~~~~~vVaINd~ 103 (416)
++||||.|+|.||+.+++.+.++ ...+++||+|-|.
T Consensus 4 ~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~ 43 (325)
T 3ing_A 4 EIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDS 43 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECS
T ss_pred eEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEec
Confidence 68999999999999999999863 1135999999885
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0011 Score=64.38 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=63.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhC-----CCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGR-----KDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQ 142 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~-----~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~ 142 (416)
++||||+|+|+||+.-++++... ..+.++||||-|. +++.+..+.+ .||. . +
T Consensus 25 kirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~-~~~~a~~~a~---~~g~---~-~--------------- 81 (393)
T 4fb5_A 25 PLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEA-NAGLAEARAG---EFGF---E-K--------------- 81 (393)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC---TTHHHHHH---HHTC---S-E---------------
T ss_pred CccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECC-CHHHHHHHHH---HhCC---C-e---------------
Confidence 69999999999999877766421 1235899999986 3332222211 1211 0 0
Q ss_pred EEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 143 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 143 v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
++ .|.+++ ..+.++|+|+=||+...-.+.+...+++|. .|++--|-
T Consensus 82 ~y--~d~~el-l~~~~iDaV~IatP~~~H~~~a~~al~aGk-hVl~EKPl 127 (393)
T 4fb5_A 82 AT--ADWRAL-IADPEVDVVSVTTPNQFHAEMAIAALEAGK-HVWCEKPM 127 (393)
T ss_dssp EE--SCHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEECSCS
T ss_pred ec--CCHHHH-hcCCCCcEEEECCChHHHHHHHHHHHhcCC-eEEEccCC
Confidence 11 111111 012378999999999999999999999985 68886664
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00058 Score=63.32 Aligned_cols=82 Identities=21% Similarity=0.327 Sum_probs=57.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
|||||+|+|++|+.+++.+... +++++++-|... + .+. + ..+
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~---g~~lv~v~d~~~-~---------------------~~~-----------~--~~~ 42 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERN---GFEIAAILDVRG-E---------------------HEK-----------M--VRG 42 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT---TCEEEEEECSSC-C---------------------CTT-----------E--ESS
T ss_pred CEEEEECCCHHHHHHHHHHhcC---CCEEEEEEecCc-c---------------------hhh-----------h--cCC
Confidence 4899999999999999998843 389988876411 0 000 1 123
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
++++-- .++|+|++||+.....+.+...+++|. .||+..|
T Consensus 43 ~~~l~~--~~~DvVv~~~~~~~~~~~~~~~l~~G~-~vv~~~~ 82 (236)
T 2dc1_A 43 IDEFLQ--REMDVAVEAASQQAVKDYAEKILKAGI-DLIVLST 82 (236)
T ss_dssp HHHHTT--SCCSEEEECSCHHHHHHHHHHHHHTTC-EEEESCG
T ss_pred HHHHhc--CCCCEEEECCCHHHHHHHHHHHHHCCC-cEEEECc
Confidence 333210 378999999999988888889999997 3444444
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0009 Score=63.81 Aligned_cols=33 Identities=18% Similarity=0.436 Sum_probs=28.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
++||+|+|+|++||.+++++.+++ + +||++-|.
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~~--~-eLva~~d~ 35 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEKG--H-EIVGVIEN 35 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--C-EEEEEECS
T ss_pred ceEEEEECcCHHHHHHHHHHHhCC--C-EEEEEEec
Confidence 489999999999999999998864 5 99998764
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0016 Score=66.16 Aligned_cols=100 Identities=21% Similarity=0.192 Sum_probs=65.2
Q ss_pred ceeEEEEccChhHH-HHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGR-NFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR-~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||+|+|+||+ .+++.+.+.+ +++||+|-|. +.+....+.+ .||.-... +.+ .
T Consensus 83 ~irigiIG~G~~g~~~~~~~l~~~~--~~~lvav~d~-~~~~~~~~a~---~~g~~~~~---------------~~~--~ 139 (433)
T 1h6d_A 83 RFGYAIVGLGKYALNQILPGFAGCQ--HSRIEALVSG-NAEKAKIVAA---EYGVDPRK---------------IYD--Y 139 (433)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCS--SEEEEEEECS-CHHHHHHHHH---HTTCCGGG---------------EEC--S
T ss_pred ceEEEEECCcHHHHHHHHHHHhhCC--CcEEEEEEcC-CHHHHHHHHH---HhCCCccc---------------ccc--c
Confidence 68999999999997 8888876643 4999999986 4443322221 12210000 111 1
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++- .+.++|+|+.||+.....+.+...+++|. .|++--|.
T Consensus 140 ~~~~~ll-~~~~vD~V~iatp~~~h~~~~~~al~aGk-~Vl~EKPl 183 (433)
T 1h6d_A 140 SNFDKIA-KDPKIDAVYIILPNSLHAEFAIRAFKAGK-HVMCEKPM 183 (433)
T ss_dssp SSGGGGG-GCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEECSSC
T ss_pred CCHHHHh-cCCCCCEEEEcCCchhHHHHHHHHHHCCC-cEEEcCCC
Confidence 2232221 12378999999999999999999999994 67775553
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00031 Score=68.26 Aligned_cols=98 Identities=18% Similarity=0.178 Sum_probs=66.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCC-----CCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKD-----SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQ 142 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~-----~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~ 142 (416)
++||||+|+|.||+.-++++...+. ...+|+||-|. +++.+..+.+ .||. . +
T Consensus 6 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~-~~~~a~~~a~---~~g~---~-~--------------- 62 (390)
T 4h3v_A 6 NLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGR-DAEAVRAAAG---KLGW---S-T--------------- 62 (390)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECS-SHHHHHHHHH---HHTC---S-E---------------
T ss_pred cCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcC-CHHHHHHHHH---HcCC---C-c---------------
Confidence 6999999999999998887754211 12489999986 5554433321 1221 0 1
Q ss_pred EEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 143 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 143 v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
++ .|.+++ ..+.++|+|+=||+...-.+.+...+++| |.|++--|-
T Consensus 63 ~~--~d~~~l-l~~~~iDaV~I~tP~~~H~~~~~~al~aG-khVl~EKPl 108 (390)
T 4h3v_A 63 TE--TDWRTL-LERDDVQLVDVCTPGDSHAEIAIAALEAG-KHVLCEKPL 108 (390)
T ss_dssp EE--SCHHHH-TTCTTCSEEEECSCGGGHHHHHHHHHHTT-CEEEEESSS
T ss_pred cc--CCHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHcC-CCceeecCc
Confidence 11 122221 12347899999999999999999999999 588887664
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00073 Score=64.68 Aligned_cols=93 Identities=15% Similarity=0.179 Sum_probs=64.1
Q ss_pred ceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||.|+|.||+. .++.+...+ ++++++|-|. +++.+..+.+ .||. . . .
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~--~~~l~av~d~-~~~~~~~~a~---~~~~-----~---------------~--~ 57 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSE--RFEFVGAFTP-NKVKREKICS---DYRI-----M---------------P--F 57 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCS--SSEEEEEECS-CHHHHHHHHH---HHTC-----C---------------B--C
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCC--CeEEEEEECC-CHHHHHHHHH---HcCC-----C---------------C--c
Confidence 689999999999996 888776643 4999999886 4444333221 1111 0 0 0
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++- + ++|+|+-||+.....+.+...+++|. .|++.-|.
T Consensus 58 ~~~~~ll--~-~~D~V~i~tp~~~h~~~~~~al~~gk-~vl~EKP~ 99 (308)
T 3uuw_A 58 DSIESLA--K-KCDCIFLHSSTETHYEIIKILLNLGV-HVYVDKPL 99 (308)
T ss_dssp SCHHHHH--T-TCSEEEECCCGGGHHHHHHHHHHTTC-EEEECSSS
T ss_pred CCHHHHH--h-cCCEEEEeCCcHhHHHHHHHHHHCCC-cEEEcCCC
Confidence 1122211 1 68999999999999999999999994 58876664
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00065 Score=66.37 Aligned_cols=88 Identities=24% Similarity=0.229 Sum_probs=63.0
Q ss_pred ceeEEEEccChhHH-HHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGR-NFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR-~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||+|+|.||+ ..++++...+ +++||||-|.. .+ + + | ++++
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~--~~~lvav~d~~-~~------~----~------------------g--~~~~-- 69 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNA--NFKLVATASRH-GT------V----E------------------G--VNSY-- 69 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCT--TEEEEEEECSS-CC------C----T------------------T--SEEE--
T ss_pred CceEEEEecCHHHHHHHHHHHHhCC--CeEEEEEEeCC-hh------h----c------------------C--CCcc--
Confidence 68999999999999 7899988764 49999999851 11 0 1 1 0111
Q ss_pred cCCCCCCCCC-ccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGD-LGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~-~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++- .+ .++|+|+-||+...-.+.+...+++| |.|++--|.
T Consensus 70 ~~~~~ll-~~~~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKP~ 114 (330)
T 4ew6_A 70 TTIEAML-DAEPSIDAVSLCMPPQYRYEAAYKALVAG-KHVFLEKPP 114 (330)
T ss_dssp SSHHHHH-HHCTTCCEEEECSCHHHHHHHHHHHHHTT-CEEEECSSS
T ss_pred CCHHHHH-hCCCCCCEEEEeCCcHHHHHHHHHHHHcC-CcEEEeCCC
Confidence 1222210 11 36899999999999999999999999 678886664
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0013 Score=65.25 Aligned_cols=36 Identities=28% Similarity=0.528 Sum_probs=30.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC------CCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK------DSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~------~~~~~vVaINd~ 103 (416)
++||||.|+|.||+.+++.+.+.. ..+++|++|-|.
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~ 43 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADS 43 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECS
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeC
Confidence 389999999999999999998751 024999999885
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0013 Score=64.11 Aligned_cols=98 Identities=19% Similarity=0.168 Sum_probs=67.1
Q ss_pred cceeEEEEccC-hhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAINGFG-RIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaINGfG-rIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
.++||||+|+| .+|+..++.+.... +.++||+|-|. +++.+..+.+ .||. .+ ++
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~-~~~~lvav~d~-~~~~~~~~a~---~~~~----~~---------------~~- 71 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLS-HLFEITAVTSR-TRSHAEEFAK---MVGN----PA---------------VF- 71 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTT-TTEEEEEEECS-SHHHHHHHHH---HHSS----CE---------------EE-
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCC-CceEEEEEEcC-CHHHHHHHHH---HhCC----Cc---------------cc-
Confidence 36899999999 89999999987651 34999999986 4544433221 1221 01 11
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+-||+...-.+.+...+++| |.|++--|-
T Consensus 72 -~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKPl 115 (340)
T 1zh8_A 72 -DSYEEL-LESGLVDAVDLTLPVELNLPFIEKALRKG-VHVICEKPI 115 (340)
T ss_dssp -SCHHHH-HHSSCCSEEEECCCGGGHHHHHHHHHHTT-CEEEEESSS
T ss_pred -CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHCC-CcEEEeCCC
Confidence 111111 01236899999999999999999999999 578886664
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0023 Score=61.72 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=61.6
Q ss_pred cceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
|++||||.|+|.||+. +++.+...+ .++|+ |-|. +++.+..+.+ .||. ... .
T Consensus 1 m~~~igiIG~G~ig~~~~~~~l~~~~--~~~l~-v~d~-~~~~~~~~a~---~~g~---~~~---------------~-- 53 (323)
T 1xea_A 1 MSLKIAMIGLGDIAQKAYLPVLAQWP--DIELV-LCTR-NPKVLGTLAT---RYRV---SAT---------------C-- 53 (323)
T ss_dssp -CEEEEEECCCHHHHHTHHHHHTTST--TEEEE-EECS-CHHHHHHHHH---HTTC---CCC---------------C--
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCC--CceEE-EEeC-CHHHHHHHHH---HcCC---Ccc---------------c--
Confidence 6789999999999984 888886643 48998 8775 4443332221 1221 000 0
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
....+.+ +.++|+|+.||+.....+.+...+++|. .|++.-|.
T Consensus 54 ~~~~~~l---~~~~D~V~i~tp~~~h~~~~~~al~~Gk-~V~~EKP~ 96 (323)
T 1xea_A 54 TDYRDVL---QYGVDAVMIHAATDVHSTLAAFFLHLGI-PTFVDKPL 96 (323)
T ss_dssp SSTTGGG---GGCCSEEEECSCGGGHHHHHHHHHHTTC-CEEEESCS
T ss_pred cCHHHHh---hcCCCEEEEECCchhHHHHHHHHHHCCC-eEEEeCCC
Confidence 0111122 2378999999999988899988999984 57775553
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00098 Score=66.23 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=66.6
Q ss_pred cceeEEEEccC-hhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAINGFG-RIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaINGfG-rIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
|++||||.|+| ++|+..++.+...+ +++|+||-|. +++....+.+ .|| +. ++
T Consensus 1 ~~~rigiiG~G~~~~~~~~~~l~~~~--~~~l~av~d~-~~~~~~~~a~---~~g-----~~---------------~~- 53 (387)
T 3moi_A 1 MKIRFGICGLGFAGSVLMAPAMRHHP--DAQIVAACDP-NEDVRERFGK---EYG-----IP---------------VF- 53 (387)
T ss_dssp CCEEEEEECCSHHHHTTHHHHHHHCT--TEEEEEEECS-CHHHHHHHHH---HHT-----CC---------------EE-
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCC--CeEEEEEEeC-CHHHHHHHHH---HcC-----CC---------------eE-
Confidence 57899999999 99999999988754 4999999986 4443322211 111 01 11
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+-||+.....+.+...+++| |.|++--|-
T Consensus 54 -~~~~el-l~~~~vD~V~i~tp~~~H~~~~~~al~aG-k~Vl~EKP~ 97 (387)
T 3moi_A 54 -ATLAEM-MQHVQMDAVYIASPHQFHCEHVVQASEQG-LHIIVEKPL 97 (387)
T ss_dssp -SSHHHH-HHHSCCSEEEECSCGGGHHHHHHHHHHTT-CEEEECSCC
T ss_pred -CCHHHH-HcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CceeeeCCc
Confidence 112111 01236899999999999999999999999 678886663
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00054 Score=67.73 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=29.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC-----CCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK-----DSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~-----~~~~~vVaINd~ 103 (416)
++||||.|+|.||+.+++.+.+++ ..+++|++|-|.
T Consensus 6 ~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~ 46 (331)
T 3c8m_A 6 TINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADS 46 (331)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECS
T ss_pred EEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEEC
Confidence 599999999999999999987642 114899999875
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0018 Score=63.75 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=65.1
Q ss_pred ceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||+|+|.||+. .++.+.+.+ +++|++|-|. +++.+..+.+ .||. ++ ++
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~--~~~l~av~d~-~~~~~~~~a~---~~~~----~~---------------~~-- 57 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQ--DIRIVAACDS-DLERARRVHR---FISD----IP---------------VL-- 57 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCT--TEEEEEEECS-SHHHHGGGGG---TSCS----CC---------------EE--
T ss_pred cceEEEECCCHHHHHHHHHHHHhCC--CcEEEEEEcC-CHHHHHHHHH---hcCC----Cc---------------cc--
Confidence 589999999999995 889887654 4999999886 4444333221 1110 01 11
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+-||+...-.+.+...+++| |.|++--|-
T Consensus 58 ~~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKPl 101 (359)
T 3m2t_A 58 DNVPAM-LNQVPLDAVVMAGPPQLHFEMGLLAMSKG-VNVFVEKPP 101 (359)
T ss_dssp SSHHHH-HHHSCCSEEEECSCHHHHHHHHHHHHHTT-CEEEECSCS
T ss_pred CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEECCC
Confidence 122221 01236899999999999999999999999 468886664
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0019 Score=61.67 Aligned_cols=73 Identities=23% Similarity=0.268 Sum_probs=52.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
|||+|+| +|++||.+++++.+++ +++||++-|..+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~--~~elva~~d~~~------------------------------------------ 36 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAAD--DLTLSAELDAGD------------------------------------------ 36 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCT--TCEEEEEECTTC------------------------------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--CCEEEEEEccCC------------------------------------------
Confidence 5899999 6999999999988764 399998876310
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
+++.+. ..++|+|||+|......+.+...+++|..- ||
T Consensus 37 dl~~~~--~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~-Vi 74 (245)
T 1p9l_A 37 PLSLLT--DGNTEVVIDFTHPDVVMGNLEFLIDNGIHA-VV 74 (245)
T ss_dssp CTHHHH--HTTCCEEEECSCTTTHHHHHHHHHHTTCEE-EE
T ss_pred CHHHHh--ccCCcEEEEccChHHHHHHHHHHHHcCCCE-EE
Confidence 000000 014689999988887778888888888754 44
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0018 Score=62.20 Aligned_cols=91 Identities=21% Similarity=0.225 Sum_probs=61.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC-CCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK-DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~-~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||.|+|.||+..++.+.... .+.+++++|-|... + ...+ | +..
T Consensus 7 ~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~-------~--a~~~------------------g--~~~--- 54 (294)
T 1lc0_A 7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE-------L--GSLD------------------E--VRQ--- 54 (294)
T ss_dssp SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC-------C--CEET------------------T--EEB---
T ss_pred cceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchH-------H--HHHc------------------C--CCC---
Confidence 589999999999999998876510 12489999987411 0 1101 1 010
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+.||+.....+.+...+++|. .|++--|.
T Consensus 55 ~~~~el-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~EKPl 98 (294)
T 1lc0_A 55 ISLEDA-LRSQEIDVAYICSESSSHEDYIRQFLQAGK-HVLVEYPM 98 (294)
T ss_dssp CCHHHH-HHCSSEEEEEECSCGGGHHHHHHHHHHTTC-EEEEESCS
T ss_pred CCHHHH-hcCCCCCEEEEeCCcHhHHHHHHHHHHCCC-cEEEeCCC
Confidence 122221 012379999999999999999999999994 68876553
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0032 Score=60.90 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=60.4
Q ss_pred ceeEEEEccChhHH-HHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGR-NFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR-~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||.|+|.+|. .+++.+... .++||+|-|. +++.+..+.+ .||. ++ + .
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~~---~~~lvav~d~-~~~~~~~~a~---~~~~----~~---------------~--~ 55 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLIDA---GAELAGVFES-DSDNRAKFTS---LFPS----VP---------------F--A 55 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHHT---TCEEEEEECS-CTTSCHHHHH---HSTT----CC---------------B--C
T ss_pred ccEEEEECCChHHHHHhhhhhcCC---CcEEEEEeCC-CHHHHHHHHH---hcCC----Cc---------------c--c
Confidence 58999999999996 577776432 4899999885 2222211110 1110 01 0 0
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+-||+.....+.+...+++| |.|++--|.
T Consensus 56 ~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aG-khVl~EKP~ 99 (336)
T 2p2s_A 56 ASAEQL-ITDASIDLIACAVIPCDRAELALRTLDAG-KDFFTAKPP 99 (336)
T ss_dssp SCHHHH-HTCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSSC
T ss_pred CCHHHH-hhCCCCCEEEEeCChhhHHHHHHHHHHCC-CcEEEeCCC
Confidence 111111 01236899999999999999999999998 468876564
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0018 Score=67.03 Aligned_cols=110 Identities=19% Similarity=0.326 Sum_probs=64.1
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEE-----CCEEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISV-----DGKVI 141 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v-----~G~~I 141 (416)
.++||||.|+|+||+.+++.+... +.++|++|-|. +++.+...++ ..||. +..+... ++.-.+ .| .+
T Consensus 22 k~IRVGIIGaG~iG~~~~~~l~~~--~~veLvAV~D~-~~era~~~a~--~~yG~-~~~~~~~-~~~~~i~~a~~~g-~~ 93 (446)
T 3upl_A 22 KPIRIGLIGAGEMGTDIVTQVARM--QGIEVGALSAR-RLPNTFKAIR--TAYGD-EENAREA-TTESAMTRAIEAG-KI 93 (446)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTS--SSEEEEEEECS-STHHHHHHHH--HHHSS-STTEEEC-SSHHHHHHHHHTT-CE
T ss_pred CceEEEEECChHHHHHHHHHHhhC--CCcEEEEEEeC-CHHHHHHHHH--HhcCC-ccccccc-cchhhhhhhhccC-Cc
Confidence 369999999999999999987764 35999999997 4444433321 00131 1111100 000000 01 12
Q ss_pred EEEeccCCCCCCCCCccccEEEcCCCCC-CCHhhHHHHHHcCCCEEEE
Q 014890 142 QVVSNRNPVNLPWGDLGIDLVIEGTGVF-VDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 142 ~v~~~~~p~~i~W~~~gvDiVie~TG~f-~s~~~a~~hl~aGAkkVII 188 (416)
.++ .|.+++ ..+.++|+|++|||.. ...+.+...+++|. .|++
T Consensus 94 ~v~--~D~eeL-L~d~dIDaVviaTp~p~~H~e~a~~AL~AGK-HVv~ 137 (446)
T 3upl_A 94 AVT--DDNDLI-LSNPLIDVIIDATGIPEVGAETGIAAIRNGK-HLVM 137 (446)
T ss_dssp EEE--SCHHHH-HTCTTCCEEEECSCCHHHHHHHHHHHHHTTC-EEEE
T ss_pred eEE--CCHHHH-hcCCCCCEEEEcCCChHHHHHHHHHHHHcCC-cEEe
Confidence 222 233222 1234799999999874 45678889999985 5554
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0027 Score=61.24 Aligned_cols=99 Identities=23% Similarity=0.283 Sum_probs=60.2
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+|||+|+|. |++||.+++.+.+.+ +++||++-|..+.. +.-.| .|.+.+- .. .| +.+.
T Consensus 5 ~mkV~V~Ga~G~mG~~~~~~~~~~~--~~elva~~d~~~~~----~~g~d--~~~~~g~----~~-----~~--v~~~-- 63 (273)
T 1dih_A 5 NIRVAIAGAGGRMGRQLIQAALALE--GVQLGAALEREGSS----LLGSD--AGELAGA----GK-----TG--VTVQ-- 63 (273)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHST--TEECCCEECCTTCT----TCSCC--TTCSSSS----SC-----CS--CCEE--
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCC--CCEEEEEEecCchh----hhhhh--HHHHcCC----Cc-----CC--ceec--
Confidence 489999996 999999999988754 49999887641100 00001 0111000 00 01 2222
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
.+.+++- .++|+|||+|......+.+...+++|.. ||+..|
T Consensus 64 ~dl~~~l---~~~DvVIDft~p~~~~~~~~~a~~~G~~-vVigTt 104 (273)
T 1dih_A 64 SSLDAVK---DDFDVFIDFTRPEGTLNHLAFCRQHGKG-MVIGTT 104 (273)
T ss_dssp SCSTTTT---TSCSEEEECSCHHHHHHHHHHHHHTTCE-EEECCC
T ss_pred CCHHHHh---cCCCEEEEcCChHHHHHHHHHHHhCCCC-EEEECC
Confidence 3343331 2789999999877777788888899974 666444
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=64.41 Aligned_cols=97 Identities=12% Similarity=0.082 Sum_probs=63.4
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCC---ChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG---GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~---~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
|++||||.|+|.+|+..++++ . ++++||||-|.. ..+.++..++ .||. ..+ +
T Consensus 1 M~~rvgiiG~G~~~~~~~~~l--~--~~~~lvav~d~~~~~~~~~~~~~~~---~~~~---~~~---------------~ 55 (337)
T 3ip3_A 1 MSLKICVIGSSGHFRYALEGL--D--EECSITGIAPGVPEEDLSKLEKAIS---EMNI---KPK---------------K 55 (337)
T ss_dssp -CEEEEEECSSSCHHHHHTTC--C--TTEEEEEEECSSTTCCCHHHHHHHH---TTTC---CCE---------------E
T ss_pred CceEEEEEccchhHHHHHHhc--C--CCcEEEEEecCCchhhHHHHHHHHH---HcCC---CCc---------------c
Confidence 679999999999999888877 3 349999999852 2233333221 0110 001 1
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
+ .+.+++ ..+.++|+|+-||....-.+.+...+++| |.|++--|-
T Consensus 56 ~--~~~~~l-l~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 100 (337)
T 3ip3_A 56 Y--NNWWEM-LEKEKPDILVINTVFSLNGKILLEALERK-IHAFVEKPI 100 (337)
T ss_dssp C--SSHHHH-HHHHCCSEEEECSSHHHHHHHHHHHHHTT-CEEEECSSS
T ss_pred c--CCHHHH-hcCCCCCEEEEeCCcchHHHHHHHHHHCC-CcEEEeCCC
Confidence 1 122221 11236899999999999999999999999 468886664
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0042 Score=59.70 Aligned_cols=94 Identities=28% Similarity=0.287 Sum_probs=61.7
Q ss_pred eeEEEEccChhHHHH-HHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNF-LRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~v-lr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||||.|+|.||+.+ ++.+.+ + .+++++|-|. +++....+.+ .+|.- + ++ .
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~-~--~~~~vav~d~-~~~~~~~~~~---~~g~~----~---------------~~--~ 52 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRA-T--GGEVVSMMST-SAERGAAYAT---ENGIG----K---------------SV--T 52 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHH-T--TCEEEEEECS-CHHHHHHHHH---HTTCS----C---------------CB--S
T ss_pred CeEEEEcccHHHHHhhhHHhhc-C--CCeEEEEECC-CHHHHHHHHH---HcCCC----c---------------cc--C
Confidence 589999999999998 888876 3 3899999886 4443332221 12210 0 00 1
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
+.+++ ..+.++|+|+.||+.....+.+...+++| |.|++..|.
T Consensus 53 ~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~G-k~v~~ekP~ 95 (332)
T 2glx_A 53 SVEEL-VGDPDVDAVYVSTTNELHREQTLAAIRAG-KHVLCEKPL 95 (332)
T ss_dssp CHHHH-HTCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSSS
T ss_pred CHHHH-hcCCCCCEEEEeCChhHhHHHHHHHHHCC-CeEEEeCCC
Confidence 11111 01126899999999998889999999998 467775453
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0049 Score=59.78 Aligned_cols=95 Identities=17% Similarity=0.204 Sum_probs=63.8
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|+||||+|+ |.||+..++++.+.+ .++|||-|... +. +.. +..++ .++ ++
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~---~~lvav~d~~~-~~-~~~---~~~~~----~~~---------------~~-- 53 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVG---GVLVASLDPAT-NV-GLV---DSFFP----EAE---------------FF-- 53 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTT---CEEEEEECSSC-CC-GGG---GGTCT----TCE---------------EE--
T ss_pred ceEEEEECCChHHHHHHHHHHHhCC---CEEEEEEcCCH-HH-HHH---HhhCC----CCc---------------ee--
Confidence 379999999 799999999998753 89999998522 11 111 11111 011 11
Q ss_pred cCCCCCC-----C--CCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLP-----W--GDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~-----W--~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++. | .+.++|+|+-||+...-.+.+...+++| |.|++--|-
T Consensus 54 ~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~~H~~~~~~al~aG-khVl~EKPl 105 (312)
T 3o9z_A 54 TEPEAFEAYLEDLRDRGEGVDYLSIASPNHLHYPQIRMALRLG-ANALSEKPL 105 (312)
T ss_dssp SCHHHHHHHHHHHHHTTCCCSEEEECSCGGGHHHHHHHHHHTT-CEEEECSSS
T ss_pred CCHHHHHHHhhhhcccCCCCcEEEECCCchhhHHHHHHHHHCC-CeEEEECCC
Confidence 1111110 0 1347899999999999999999999999 578886664
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.004 Score=59.98 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=56.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
.|||+|.|||.|||.++|. + ++|+|++=+ +. .| .+ |- .+ ..
T Consensus 12 ~~rV~i~G~GaIG~~v~~~---~---~leLv~v~~----~k----------~g------------el---gv--~a--~~ 52 (253)
T 1j5p_A 12 HMTVLIIGMGNIGKKLVEL---G---NFEKIYAYD----RI----------SK------------DI---PG--VV--RL 52 (253)
T ss_dssp CCEEEEECCSHHHHHHHHH---S---CCSEEEEEC----SS----------CC------------CC---SS--SE--EC
T ss_pred cceEEEECcCHHHHHHHhc---C---CcEEEEEEe----cc----------cc------------cc---Cc--ee--eC
Confidence 5799999999999999998 2 399988754 00 01 01 21 11 24
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
|.+++. . ..|+|+||++..--++...+.|++|.. |+++
T Consensus 53 d~d~ll--a-~pD~VVe~A~~~av~e~~~~iL~aG~d-vv~~ 90 (253)
T 1j5p_A 53 DEFQVP--S-DVSTVVECASPEAVKEYSLQILKNPVN-YIII 90 (253)
T ss_dssp SSCCCC--T-TCCEEEECSCHHHHHHHHHHHTTSSSE-EEEC
T ss_pred CHHHHh--h-CCCEEEECCCHHHHHHHHHHHHHCCCC-EEEc
Confidence 566665 2 789999999988777778899999985 3443
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0045 Score=61.07 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=63.1
Q ss_pred ceeEEEEccChhHH-HHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGR-NFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR-~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||+|+|++|+ .++.++.. ++++||||-|. +++.+..+.+ .||. ++ ++
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~---~~~~lvav~d~-~~~~a~~~a~---~~~~----~~---------------~~-- 77 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLR---AGARLAGFHEK-DDALAAEFSA---VYAD----AR---------------RI-- 77 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHH---TTCEEEEEECS-CHHHHHHHHH---HSSS----CC---------------EE--
T ss_pred CcEEEEECcCHHHHHHHHHHhhc---CCcEEEEEEcC-CHHHHHHHHH---HcCC----Cc---------------cc--
Confidence 68999999999995 45666553 24999999986 4544333221 1211 01 11
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+-||+...-.+.+...+++| |.|++--|-
T Consensus 78 ~~~~~l-l~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 121 (361)
T 3u3x_A 78 ATAEEI-LEDENIGLIVSAAVSSERAELAIRAMQHG-KDVLVDKPG 121 (361)
T ss_dssp SCHHHH-HTCTTCCEEEECCCHHHHHHHHHHHHHTT-CEEEEESCS
T ss_pred CCHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHCC-CeEEEeCCC
Confidence 112221 11236899999999999999999999999 578887674
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0052 Score=63.39 Aligned_cols=100 Identities=11% Similarity=0.169 Sum_probs=67.3
Q ss_pred ceeEEEEcc----ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 68 KLKVAINGF----GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 68 ~ikVaINGf----GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
++||||+|+ |.+|+..++++.... +.++||||-|. +++.+..+.+ .||. + .++ +
T Consensus 39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~-~~~~lvav~d~-~~~~a~~~a~---~~g~-~-~~~---------------~ 96 (479)
T 2nvw_A 39 PIRVGFVGLTSGKSWVAKTHFLAIQQLS-SQFQIVALYNP-TLKSSLQTIE---QLQL-K-HAT---------------G 96 (479)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTT-TTEEEEEEECS-CHHHHHHHHH---HTTC-T-TCE---------------E
T ss_pred cCEEEEEcccCCCCHHHHHHHHHHHhcC-CCeEEEEEEeC-CHHHHHHHHH---HcCC-C-cce---------------e
Confidence 589999999 999999999998751 24999999986 4443322221 1221 0 001 1
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC-----CEEEEcCCC
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA-----KKVLITAPG 192 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA-----kkVIIsaps 192 (416)
+ .+.+++ -.+.++|+|+-||+...-.+.+...+++|. |.|++--|.
T Consensus 97 ~--~d~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPl 147 (479)
T 2nvw_A 97 F--DSLESF-AQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWAL 147 (479)
T ss_dssp E--SCHHHH-HHCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSS
T ss_pred e--CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCC
Confidence 1 112221 012368999999999999999999999994 789886664
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.01 Score=57.71 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=64.1
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|+||||+|+ |.||+..++++...+ .++|||-|... +. +. .+..|+ .++ ++
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~---~~lvav~d~~~-~~-~~---~~~~~~----~~~---------------~~-- 53 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTG---NCLVSAYDIND-SV-GI---IDSISP----QSE---------------FF-- 53 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTT---CEEEEEECSSC-CC-GG---GGGTCT----TCE---------------EE--
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCC---CEEEEEEcCCH-HH-HH---HHhhCC----CCc---------------EE--
Confidence 479999999 799999999998753 89999998622 11 11 111110 011 11
Q ss_pred cCCCCCC--------CCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLP--------WGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~--------W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++- +.+.++|+|+-||+...-.+.+...+++| |.|++--|-
T Consensus 54 ~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~~~H~~~~~~al~aG-khVl~EKPl 106 (318)
T 3oa2_A 54 TEFEFFLDHASNLKRDSATALDYVSICSPNYLHYPHIAAGLRLG-CDVICEKPL 106 (318)
T ss_dssp SSHHHHHHHHHHHTTSTTTSCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSSC
T ss_pred CCHHHHHHhhhhhhhccCCCCcEEEECCCcHHHHHHHHHHHHCC-CeEEEECCC
Confidence 1111110 02347999999999999999999999999 578886664
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0059 Score=61.49 Aligned_cols=98 Identities=20% Similarity=0.189 Sum_probs=63.2
Q ss_pred ceeEEEEccCh---hHHHHHHHHHhCCCCCceEEE-EecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 68 KLKVAINGFGR---IGRNFLRCWHGRKDSPLEVVA-INDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 68 ~ikVaINGfGr---IGR~vlr~l~~~~~~~~~vVa-INd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
++||||+|+|+ ||+..++++...+ .+++|+ |-|. +++.+..+.+ .||.-. .+ . +
T Consensus 37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~--~~~lva~v~d~-~~~~a~~~a~---~~g~~~--~~-~------~------- 94 (417)
T 3v5n_A 37 RIRLGMVGGGSGAFIGAVHRIAARLDD--HYELVAGALSS-TPEKAEASGR---ELGLDP--SR-V------Y------- 94 (417)
T ss_dssp CEEEEEESCC--CHHHHHHHHHHHHTS--CEEEEEEECCS-SHHHHHHHHH---HHTCCG--GG-B------C-------
T ss_pred cceEEEEcCCCchHHHHHHHHHHhhCC--CcEEEEEEeCC-CHHHHHHHHH---HcCCCc--cc-c------c-------
Confidence 69999999999 9999988877653 499997 8775 4443332221 122100 00 0 0
Q ss_pred EeccCCCCCCCCC-----ccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 144 VSNRNPVNLPWGD-----LGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 144 ~~~~~p~~i~W~~-----~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++- .+ .++|+|+-||+...-.+.+...+++| |.|++--|-
T Consensus 95 ---~~~~~ll-~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 143 (417)
T 3v5n_A 95 ---SDFKEMA-IREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRG-IHVICDKPL 143 (417)
T ss_dssp ---SCHHHHH-HHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTT-CEEEEESSS
T ss_pred ---CCHHHHH-hcccccCCCCcEEEECCCcHHHHHHHHHHHhCC-CeEEEECCC
Confidence 0111110 01 25899999999999999999999999 468887663
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0084 Score=60.00 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=30.9
Q ss_pred cceeEEEEccChhHHHHHHHHHhCC-CCCceEEEEecC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRK-DSPLEVVAINDT 103 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~-~~~~~vVaINd~ 103 (416)
.++||||.|+|.||+.+++.+.+.+ ..+++|++|-|.
T Consensus 3 k~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~ 40 (358)
T 1ebf_A 3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEA 40 (358)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECS
T ss_pred ceEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 3589999999999999999998763 224899999874
|
| >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.01 Score=60.37 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=60.5
Q ss_pred eeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc-cccccccCCCceeeecCCe---E--EECCEEE
Q 014890 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGTDG---I--SVDGKVI 141 (416)
Q Consensus 69 ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk-yDS~~G~f~~~v~~~~~~~---i--~v~G~~I 141 (416)
+||+|.|+ |.||+.+++.+.+.+ ..++++++---.+++.+....+ |... .+.+.+.+. + .+.+..+
T Consensus 5 ~rI~ILGsTGSIG~~~l~vi~~~p-~~~~v~al~ag~ni~~l~~~~~~f~~~------~v~v~d~~~~~~l~~~l~~~~~ 77 (388)
T 1r0k_A 5 RTVTVLGATGSIGHSTLDLIERNL-DRYQVIALTANRNVKDLADAAKRTNAK------RAVIADPSLYNDLKEALAGSSV 77 (388)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTG-GGEEEEEEEESSCHHHHHHHHHHTTCS------EEEESCGGGHHHHHHHTTTCSS
T ss_pred eEEEEECCCeEeHHHHHHHHHhCc-CcEEEEEEEcCCCHHHHHHHHHHcCCc------EEEEcChHHHHHHHHHhccCCc
Confidence 79999997 999999999998764 2499998832225554443332 2111 011000000 0 0011112
Q ss_pred EEEe-ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 142 QVVS-NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 142 ~v~~-~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
.++. ..+..++- ... +|+|+++++.+...+-+-..+++| |+|+.
T Consensus 78 ~v~~g~~~~~el~-~~~-iDvVV~ai~G~aGl~ptlaAi~aG-K~Vvl 122 (388)
T 1r0k_A 78 EAAAGADALVEAA-MMG-ADWTMAAIIGCAGLKATLAAIRKG-KTVAL 122 (388)
T ss_dssp EEEESHHHHHHHH-TSC-CSEEEECCCSGGGHHHHHHHHHTT-SEEEE
T ss_pred EEEeCccHHHHHH-cCC-CCEEEEeCCCHHHHHHHHHHHHCC-CEEEE
Confidence 2221 11111111 123 799999996677777777888998 45544
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.015 Score=54.25 Aligned_cols=96 Identities=22% Similarity=0.213 Sum_probs=64.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
..||+|.|.|.+|+.+++.+... . .+++||+=|. +++. .|+ .++|.++ ....
T Consensus 80 ~~rV~IIGaG~~G~~la~~~~~~-~-g~~iVg~~D~-dp~k----------~g~-------------~i~gv~V--~~~~ 131 (211)
T 2dt5_A 80 KWGLCIVGMGRLGSALADYPGFG-E-SFELRGFFDV-DPEK----------VGR-------------PVRGGVI--EHVD 131 (211)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCC-S-SEEEEEEEES-CTTT----------TTC-------------EETTEEE--EEGG
T ss_pred CCEEEEECccHHHHHHHHhHhhc-C-CcEEEEEEeC-CHHH----------Hhh-------------hhcCCee--ecHH
Confidence 36999999999999999863332 3 5999999874 2210 111 1344333 3333
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK 193 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapsk 193 (416)
+..++ -.+ ++|.|+-|++.....+-+..-+++|.+.++.-.|..
T Consensus 132 dl~el-l~~-~ID~ViIA~Ps~~~~ei~~~l~~aGi~~Ilnf~P~~ 175 (211)
T 2dt5_A 132 LLPQR-VPG-RIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVV 175 (211)
T ss_dssp GHHHH-STT-TCCEEEECSCHHHHHHHHHHHHHHTCCEEEECSSSC
T ss_pred hHHHH-HHc-CCCEEEEeCCchhHHHHHHHHHHcCCCEEEECCccc
Confidence 33332 134 899999999988777777888899998776667764
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0077 Score=60.00 Aligned_cols=103 Identities=18% Similarity=0.121 Sum_probs=63.4
Q ss_pred ceeEEEEccCh---hHHHHHHHHHhCCCCCceEEE-EecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 68 KLKVAINGFGR---IGRNFLRCWHGRKDSPLEVVA-INDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 68 ~ikVaINGfGr---IGR~vlr~l~~~~~~~~~vVa-INd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
++||||+|+|+ ||+..++++...+ ++++|+ |-|. +++....+.+ .||.-. .+ . +..- -.+
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~--~~~lva~v~d~-~~~~a~~~a~---~~g~~~--~~-~------~~~~-~~l 75 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRDN--TFVLVAGAFDI-DPIRGSAFGE---QLGVDS--ER-C------YADY-LSM 75 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGGG--SEEEEEEECCS-SHHHHHHHHH---HTTCCG--GG-B------CSSH-HHH
T ss_pred cceEEEEcCCccchhHHHHHHHHhhCC--CeEEEEEEeCC-CHHHHHHHHH---HhCCCc--ce-e------eCCH-HHH
Confidence 69999999999 9999988876543 499998 7775 4443332221 122100 00 0 0000 000
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
+.. +.. .+.++|+|+-||+...-.+.+...+++| |.|++--|-
T Consensus 76 l~~--~~~---~~~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKPl 118 (398)
T 3dty_A 76 FEQ--EAR---RADGIQAVSIATPNGTHYSITKAALEAG-LHVVCEKPL 118 (398)
T ss_dssp HHH--HTT---CTTCCSEEEEESCGGGHHHHHHHHHHTT-CEEEECSCS
T ss_pred Hhc--ccc---cCCCCCEEEECCCcHHHHHHHHHHHHCC-CeEEEeCCC
Confidence 000 000 0025899999999999999999999999 578875553
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0066 Score=61.60 Aligned_cols=100 Identities=11% Similarity=0.147 Sum_probs=67.3
Q ss_pred ceeEEEEcc----ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 68 KLKVAINGF----GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 68 ~ikVaINGf----GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
++||||+|+ |.+|+..++.+.... +.++||||-|. +.+.+..+.+ .||. + .+ ++
T Consensus 20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~-~~~~lvav~d~-~~~~~~~~a~---~~g~-~-~~---------------~~ 77 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIKTHYPAILQLS-SQFQITALYSP-KIETSIATIQ---RLKL-S-NA---------------TA 77 (438)
T ss_dssp CEEEEEESCCTTSSSTTTTHHHHHHHTT-TTEEEEEEECS-SHHHHHHHHH---HTTC-T-TC---------------EE
T ss_pred CCEEEEEcccCCCChHHHHHHHHHHhcC-CCeEEEEEEeC-CHHHHHHHHH---HcCC-C-cc---------------ee
Confidence 589999999 999999999998761 24999999986 4443322221 1221 0 01 11
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC-----CEEEEcCCC
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA-----KKVLITAPG 192 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA-----kkVIIsaps 192 (416)
+ .+.+++- .+.++|+|+-||+.....+.+...+++|. |.|++--|.
T Consensus 78 ~--~~~~~ll-~~~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~ 128 (438)
T 3btv_A 78 F--PTLESFA-SSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWAL 128 (438)
T ss_dssp E--SSHHHHH-HCSSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSC
T ss_pred e--CCHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcc
Confidence 1 1222221 12368999999999999999999999995 788886664
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.012 Score=57.99 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=60.5
Q ss_pred ccceeEEEEc-cChhHHH-HH----HHHHhCCCCCceEE---------EEecCCChhHHhhhhccccccccCCCceeeec
Q 014890 66 QAKLKVAING-FGRIGRN-FL----RCWHGRKDSPLEVV---------AINDTGGVKQASHLLKYDSTLGIFEADVKPVG 130 (416)
Q Consensus 66 ~m~ikVaING-fGrIGR~-vl----r~l~~~~~~~~~vV---------aINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~ 130 (416)
+.++||||+| +|++|+. .+ +++.+.+ .++++ +|-|. +++....+.+ .||. . +
T Consensus 4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~--~~~l~~~~~~~~~~av~~~-~~~~a~~~a~---~~~~---~-~--- 70 (383)
T 3oqb_A 4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQG--GVRLKNGDRIMPDPILVGR-SAEKVEALAK---RFNI---A-R--- 70 (383)
T ss_dssp CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHT--SEECTTSCEEEEEEEEECS-SSHHHHHHHH---HTTC---C-C---
T ss_pred CceeEEEEEeccchhhhhhhHHHHHHHHhhcC--ceeecCCcccceeeEEEcC-CHHHHHHHHH---HhCC---C-c---
Confidence 3479999999 9999997 66 7776543 13432 57665 3333322221 1111 0 0
Q ss_pred CCeEEECCEEEEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 131 TDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 131 ~~~i~v~G~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
++ .+.+++ -.+.++|+|+-||+.....+.+...+++| |.|++--|-
T Consensus 71 ------------~~--~~~~~l-l~~~~iD~V~i~tp~~~h~~~~~~al~~G-k~V~~EKP~ 116 (383)
T 3oqb_A 71 ------------WT--TDLDAA-LADKNDTMFFDAATTQARPGLLTQAINAG-KHVYCEKPI 116 (383)
T ss_dssp ------------EE--SCHHHH-HHCSSCCEEEECSCSSSSHHHHHHHHTTT-CEEEECSCS
T ss_pred ------------cc--CCHHHH-hcCCCCCEEEECCCchHHHHHHHHHHHCC-CeEEEcCCC
Confidence 11 112111 01236899999999999999999999999 578875553
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.068 Score=46.19 Aligned_cols=84 Identities=24% Similarity=0.322 Sum_probs=58.2
Q ss_pred ceeEEEEcc----ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 68 KLKVAINGF----GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 68 ~ikVaINGf----GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
+.+|||.|. |++|+.+++.+.+.. ++|..+|-.. +. +.|.+ +
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G---~~V~~vnp~~-----------~~------------------i~G~~--~ 59 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKG---FEVLPVNPNY-----------DE------------------IEGLK--C 59 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTT---CEEEEECTTC-----------SE------------------ETTEE--C
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCC---CEEEEeCCCC-----------Ce------------------ECCee--e
Confidence 468999999 999999999998764 7887777320 11 13322 2
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcC
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsa 190 (416)
+ .++.+++ ..+|+|+=|++.....+-+..-+++|++.+++..
T Consensus 60 ~--~s~~el~---~~vDlvii~vp~~~v~~v~~~~~~~g~~~i~~~~ 101 (138)
T 1y81_A 60 Y--RSVRELP---KDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWFQP 101 (138)
T ss_dssp B--SSGGGSC---TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECT
T ss_pred c--CCHHHhC---CCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 1 3455555 2689999999865555555566678998888764
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.077 Score=49.56 Aligned_cols=100 Identities=17% Similarity=0.268 Sum_probs=62.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
..||+|.|.|.+|+.+++.+... ...+++|++-|. +++. .|+ .++|.++ ....
T Consensus 85 ~~rV~IIGAG~~G~~La~~~~~~-~~g~~iVg~~D~-dp~k----------~g~-------------~i~gv~V--~~~~ 137 (215)
T 2vt3_A 85 MTDVILIGVGNLGTAFLHYNFTK-NNNTKISMAFDI-NESK----------IGT-------------EVGGVPV--YNLD 137 (215)
T ss_dssp --CEEEECCSHHHHHHHHCC-------CCEEEEEES-CTTT----------TTC-------------EETTEEE--EEGG
T ss_pred CCEEEEEccCHHHHHHHHHHhcc-cCCcEEEEEEeC-CHHH----------HHh-------------HhcCCee--echh
Confidence 36899999999999999952222 234899999875 2211 111 1445433 3333
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP 197 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~p 197 (416)
+..++- .+ . |+|+-|++.....+-+..-+++|.+.++.-+|..-..|
T Consensus 138 dl~eli-~~-~-D~ViIAvPs~~~~ei~~~l~~aGi~~Ilnf~P~~l~vp 184 (215)
T 2vt3_A 138 DLEQHV-KD-E-SVAILTVPAVAAQSITDRLVALGIKGILNFTPARLNVP 184 (215)
T ss_dssp GHHHHC-SS-C-CEEEECSCHHHHHHHHHHHHHTTCCEEEECSSCCCCCC
T ss_pred hHHHHH-Hh-C-CEEEEecCchhHHHHHHHHHHcCCCEEEEcCceeccCC
Confidence 333221 12 2 99999999877778888888999988888778643333
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.081 Score=51.47 Aligned_cols=94 Identities=19% Similarity=0.202 Sum_probs=54.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|.+||+|.|+|.||+.+++.|..... ..+|++.+- +.+.+..+.+ +|... .. .
T Consensus 32 ~~~kI~IIG~G~mG~slA~~l~~~G~-~~~V~~~dr--~~~~~~~a~~----~G~~~------------------~~--~ 84 (314)
T 3ggo_A 32 SMQNVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDI--NPESISKAVD----LGIID------------------EG--T 84 (314)
T ss_dssp SCSEEEEESCSHHHHHHHHHHHHTTC-CSEEEEECS--CHHHHHHHHH----TTSCS------------------EE--E
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCC-CCEEEEEEC--CHHHHHHHHH----CCCcc------------------hh--c
Confidence 45799999999999999999987651 127776653 3444444332 11100 01 1
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHH---HHHHcCCCEEEEcCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAG---KHIQAGAKKVLITAP 191 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~---~hl~aGAkkVIIsap 191 (416)
.++.++ .-.+.|+||.|++.....+... .+++.|+ +|++..
T Consensus 85 ~~~~~~--~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~--iv~d~~ 128 (314)
T 3ggo_A 85 TSIAKV--EDFSPDFVMLSSPVRTFREIAKKLSYILSEDA--TVTDQG 128 (314)
T ss_dssp SCTTGG--GGGCCSEEEECSCGGGHHHHHHHHHHHSCTTC--EEEECC
T ss_pred CCHHHH--hhccCCEEEEeCCHHHHHHHHHHHhhccCCCc--EEEECC
Confidence 233320 1236899999998765444333 2333444 666543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.24 Score=45.58 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=28.3
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|++||.|.|.|.||+.+++.|.+++ .+|+++..
T Consensus 4 m~~~ilVtGaG~iG~~l~~~L~~~g---~~V~~~~r 36 (286)
T 3ius_A 4 MTGTLLSFGHGYTARVLSRALAPQG---WRIIGTSR 36 (286)
T ss_dssp -CCEEEEETCCHHHHHHHHHHGGGT---CEEEEEES
T ss_pred CcCcEEEECCcHHHHHHHHHHHHCC---CEEEEEEc
Confidence 6689999999999999999999875 68888864
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.068 Score=52.55 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=56.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+|||+|.|.|.||+.+++.|.++. ++.++.++ .+.+..+-+.- . .+.+ ...
T Consensus 16 ~mkilvlGaG~vG~~~~~~L~~~~--~v~~~~~~----~~~~~~~~~~~----------~------------~~~~-d~~ 66 (365)
T 3abi_A 16 HMKVLILGAGNIGRAIAWDLKDEF--DVYIGDVN----NENLEKVKEFA----------T------------PLKV-DAS 66 (365)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTTS--EEEEEESC----HHHHHHHTTTS----------E------------EEEC-CTT
T ss_pred ccEEEEECCCHHHHHHHHHHhcCC--CeEEEEcC----HHHHHHHhccC----------C------------cEEE-ecC
Confidence 469999999999999999886542 34443333 23332221110 0 1111 012
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
|++.+.=.-.++|+||-|+|.|...+-+...+++|+ -+++..
T Consensus 67 d~~~l~~~~~~~DvVi~~~p~~~~~~v~~~~~~~g~--~yvD~s 108 (365)
T 3abi_A 67 NFDKLVEVMKEFELVIGALPGFLGFKSIKAAIKSKV--DMVDVS 108 (365)
T ss_dssp CHHHHHHHHTTCSEEEECCCGGGHHHHHHHHHHHTC--EEEECC
T ss_pred CHHHHHHHHhCCCEEEEecCCcccchHHHHHHhcCc--ceEeee
Confidence 222211011378999999999998888899999998 466654
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.12 Score=51.81 Aligned_cols=92 Identities=22% Similarity=0.295 Sum_probs=60.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||.|+| +|+.-++++.+.+ +.++||||-|. +.+....+- ..||- +++ .
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~-~~~elvav~~~-~~~~a~~~a---~~~gv--------------------~~~--~ 58 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPP-EGLELVGLLAQ-GSARSRELA---HAFGI--------------------PLY--T 58 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCC-TTEEEEEEECC-SSHHHHHHH---HHTTC--------------------CEE--S
T ss_pred CCEEEEEehH-HHHHHHHHHHhCC-CCeEEEEEECC-CHHHHHHHH---HHhCC--------------------CEE--C
Confidence 6899999999 7998888876653 24999999986 333322221 11221 111 2
Q ss_pred CCCCCCCCCccccEEEcCCCCCCC----HhhHHHHHHcCCCEEEEcCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVD----REGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s----~~~a~~hl~aGAkkVIIsap 191 (416)
+.+++. .++|+|+=||....- .+.+...+++|. .|++--|
T Consensus 59 ~~~~l~---~~~D~v~i~~p~~~h~~~~~~~a~~al~aGk-hVl~EKP 102 (372)
T 4gmf_A 59 SPEQIT---GMPDIACIVVRSTVAGGAGTQLARHFLARGV-HVIQEHP 102 (372)
T ss_dssp SGGGCC---SCCSEEEECCC--CTTSHHHHHHHHHHHTTC-EEEEESC
T ss_pred CHHHHh---cCCCEEEEECCCcccchhHHHHHHHHHHcCC-cEEEecC
Confidence 344442 258999999988876 678889999995 6887555
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.14 Score=44.50 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=58.9
Q ss_pred ceeEEEEcc----ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 68 KLKVAINGF----GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 68 ~ikVaINGf----GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
+.+|||+|. |++|+.+++.+.+.. ++|..+|-.. .++. +.|. ++
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G---~~v~~vnp~~-------------------------~g~~--i~G~--~~ 60 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQG---YHVIPVSPKV-------------------------AGKT--LLGQ--QG 60 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHT---CCEEEECSSS-------------------------TTSE--ETTE--EC
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCC---CEEEEeCCcc-------------------------cccc--cCCe--ec
Confidence 357999998 899999999988764 6777777320 0011 2342 22
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
+ .++.+++ ..+|+|+=|+......+-+..-+++|+|.++++
T Consensus 61 ~--~sl~el~---~~~Dlvii~vp~~~v~~v~~~~~~~g~~~i~i~ 101 (145)
T 2duw_A 61 Y--ATLADVP---EKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWLQ 101 (145)
T ss_dssp C--SSTTTCS---SCCSEEECCSCSTHHHHHHHHHHHHTCCEEECC
T ss_pred c--CCHHHcC---CCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEEc
Confidence 2 4566665 378999999997655666666677899998886
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.12 Score=45.99 Aligned_cols=31 Identities=26% Similarity=0.492 Sum_probs=26.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g---~~V~~~~R 32 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTD---YQIYAGAR 32 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSS---CEEEEEES
T ss_pred CeEEEECCCCHHHHHHHHHHHHCC---CEEEEEEC
Confidence 4899999 9999999999999875 68887764
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.092 Score=44.97 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=27.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|.|.|+|+||+.+++.|.... .+|+++..
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g---~~V~vid~ 50 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSG---HSVVVVDK 50 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC---CeEEEEEC
Confidence 368999999999999999998865 68887764
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.048 Score=51.10 Aligned_cols=99 Identities=22% Similarity=0.225 Sum_probs=63.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+.||+|.|.|..|+.+++.+..+ ...+++||+=|. +++. ..|+. .++|. +|....
T Consensus 84 ~~~V~IvGaG~lG~aLa~~~~~~-~~g~~iVg~~D~-dp~~---------kiG~~------------~i~Gv--pV~~~~ 138 (212)
T 3keo_A 84 TTNVMLVGCGNIGRALLHYRFHD-RNKMQISMAFDL-DSND---------LVGKT------------TEDGI--PVYGIS 138 (212)
T ss_dssp CEEEEEECCSHHHHHHTTCCCCT-TSSEEEEEEEEC-TTST---------TTTCB------------CTTCC--BEEEGG
T ss_pred CCEEEEECcCHHHHHHHHhhhcc-cCCeEEEEEEeC-Cchh---------ccCce------------eECCe--EEeCHH
Confidence 36999999999999998864322 235999998764 2210 11210 02332 333322
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
+..++ -++.++|+++-|++.....+-+..-.++|.|.++--+|.
T Consensus 139 dL~~~-v~~~~Id~vIIAvPs~~aq~v~d~lv~~GIk~I~nFap~ 182 (212)
T 3keo_A 139 TINDH-LIDSDIETAILTVPSTEAQEVADILVKAGIKGILSFSPV 182 (212)
T ss_dssp GHHHH-C-CCSCCEEEECSCGGGHHHHHHHHHHHTCCEEEECSSS
T ss_pred HHHHH-HHHcCCCEEEEecCchhHHHHHHHHHHcCCCEEEEcCCc
Confidence 22221 134689999999998877778888889999987766665
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.11 Score=48.86 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=27.5
Q ss_pred cceeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|++||+|.|+ |.+|+.+++.|.... .+|++++-
T Consensus 10 mmm~I~iIG~tG~mG~~la~~l~~~g---~~V~~~~r 43 (286)
T 3c24_A 10 GPKTVAILGAGGKMGARITRKIHDSA---HHLAAIEI 43 (286)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHSS---SEEEEECC
T ss_pred cCCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEEC
Confidence 4579999999 999999999998764 68876653
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.075 Score=47.28 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=26.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g---~~V~~~~r 36 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRG---FEVTAVVR 36 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTT---CEEEEECS
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC---CEEEEEEc
Confidence 6899999 8999999999999875 68877754
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=94.10 E-value=0.1 Score=45.03 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=60.2
Q ss_pred eeEEEEcc----ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 69 LKVAINGF----GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 69 ikVaINGf----GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
-+|+|.|. |++|+.+++.+.+.. ++|..||-- . .++. +.|. +++
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G---~~v~~vnp~----~-----~~~~------------------i~G~--~~~ 61 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQG---YRVLPVNPR----F-----QGEE------------------LFGE--EAV 61 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTT---CEEEEECGG----G-----TTSE------------------ETTE--ECB
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCC---CEEEEeCCC----c-----ccCc------------------CCCE--Eec
Confidence 48999997 899999999988765 788777731 0 0111 2343 222
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+..++| ..+|+|+=++......+-+....++|+|.++++.+.
T Consensus 62 --~sl~el~---~~vDlavi~vp~~~~~~v~~~~~~~gi~~i~~~~g~ 104 (140)
T 1iuk_A 62 --ASLLDLK---EPVDILDVFRPPSALMDHLPEVLALRPGLVWLQSGI 104 (140)
T ss_dssp --SSGGGCC---SCCSEEEECSCHHHHTTTHHHHHHHCCSCEEECTTC
T ss_pred --CCHHHCC---CCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 3345554 278999999888666666777778999999887543
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.14 Score=44.31 Aligned_cols=84 Identities=21% Similarity=0.220 Sum_probs=58.9
Q ss_pred ceeEEEEcc----ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 68 KLKVAINGF----GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 68 ~ikVaINGf----GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
+.+|||+|. |++|+.+++.+.+.. ++|..||-- ++. +.|.+ +
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G---~~v~~Vnp~-----------~~~------------------i~G~~--~ 67 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHG---YDVYPVNPK-----------YEE------------------VLGRK--C 67 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTT---CEEEEECTT-----------CSE------------------ETTEE--C
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCC---CEEEEECCC-----------CCe------------------ECCee--c
Confidence 358999997 799999999988764 788777732 011 23422 2
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcC
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsa 190 (416)
+ .++.++| ..+|+|+=++......+-+...+++|+|.++++.
T Consensus 68 y--~sl~~l~---~~vDlvvi~vp~~~~~~vv~~~~~~gi~~i~~~~ 109 (144)
T 2d59_A 68 Y--PSVLDIP---DKIEVVDLFVKPKLTMEYVEQAIKKGAKVVWFQY 109 (144)
T ss_dssp B--SSGGGCS---SCCSEEEECSCHHHHHHHHHHHHHHTCSEEEECT
T ss_pred c--CCHHHcC---CCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEECC
Confidence 2 3455555 2689999999886666667777789999887763
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.065 Score=45.33 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=32.8
Q ss_pred ccccceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHh
Q 014890 64 AAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQAS 110 (416)
Q Consensus 64 ~~~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a 110 (416)
+.+|+-+|.|.|+|++|+.+++.|.+.+ .+|++|.. +++.+.
T Consensus 3 ~~~~~~~viIiG~G~~G~~la~~L~~~g---~~v~vid~--~~~~~~ 44 (140)
T 3fwz_A 3 AVDICNHALLVGYGRVGSLLGEKLLASD---IPLVVIET--SRTRVD 44 (140)
T ss_dssp CCCCCSCEEEECCSHHHHHHHHHHHHTT---CCEEEEES--CHHHHH
T ss_pred cccCCCCEEEECcCHHHHHHHHHHHHCC---CCEEEEEC--CHHHHH
Confidence 3456679999999999999999998875 78888874 344443
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.1 Score=49.00 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=27.9
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|++||.|-| .|.||+.+++.|.+++ .+|+++..
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r 34 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDG---NTPIILTR 34 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCC---CEEEEEeC
Confidence 567999999 8999999999999875 68877764
|
| >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.17 Score=52.66 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=68.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC---------CChhHHhhhhcccccc-ccCCCceeeecCCeEEE-
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT---------GGVKQASHLLKYDSTL-GIFEADVKPVGTDGISV- 136 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~---------~~~~~~a~LlkyDS~~-G~f~~~v~~~~~~~i~v- 136 (416)
..||+|-|||-+|..+++.|.+.. -.||+|.|. .+.+.+..|+++-... |+... ..+. +
T Consensus 252 g~~vaVqG~GnVG~~~a~~L~~~G---akvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~----~~~~---~~ 321 (470)
T 2bma_A 252 KQTAVVSGSGNVALYCVQKLLHLN---VKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKE----YLNH---SS 321 (470)
T ss_dssp GCEEEEECSSHHHHHHHHHHHHTT---CEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGG----GGGT---CS
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHH----HHhh---cC
Confidence 468999999999999999998875 699999994 2566777776543322 33221 1110 0
Q ss_pred CCEEEEEEeccCCCCCCCCCccccEEEcCC-CCCCCHhhHHHHHHcCCCE
Q 014890 137 DGKVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKK 185 (416)
Q Consensus 137 ~G~~I~v~~~~~p~~i~W~~~gvDiVie~T-G~f~s~~~a~~hl~aGAkk 185 (416)
+.+ .. +++++ | ...+||.+-|+ +..++.+.+...++.+||-
T Consensus 322 ~a~---~v---~~~~~-~-~~~~DI~iPcA~~~~I~~~na~~l~~~~ak~ 363 (470)
T 2bma_A 322 TAK---YF---PNEKP-W-GVPCTLAFPCATQNDVDLDQAKLLQKNGCIL 363 (470)
T ss_dssp SCE---EC---SSCCT-T-SSCCSEEEECSSTTCBCSHHHHHHHHTTCCE
T ss_pred CcE---Ee---cCcCe-e-ecCccEEEeccccCcCCHHHHHHHHhcCcEE
Confidence 111 11 12333 8 57999999985 7888999999988888863
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.11 Score=42.52 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=25.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+|.|.|.|.+|+.+++.|.+.+ .+|+++..
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~g---~~v~~~d~ 37 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRMG---HEVLAVDI 37 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT---CCCEEEES
T ss_pred CcEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 37999999999999999998764 56666653
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.12 Score=49.82 Aligned_cols=87 Identities=18% Similarity=0.110 Sum_probs=57.6
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||+|.|+ |++|+.+++.+.+.+ +++|+.-+.... | .. +.|. +++
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g---~~~V~~V~p~~~-------------g-----------~~--~~G~--~vy-- 53 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYG---TKMVGGVTPGKG-------------G-----------TT--HLGL--PVF-- 53 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHT---CEEEEEECTTCT-------------T-----------CE--ETTE--EEE--
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CeEEEEeCCCcc-------------c-----------ce--eCCe--ecc--
Confidence 479999996 999999999988753 677643322000 0 00 2332 233
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
.+.++++ .+.++|+|+.||......+.+...+++|.+-+|+
T Consensus 54 ~sl~el~-~~~~~D~viI~tP~~~~~~~~~ea~~~Gi~~iVi 94 (288)
T 2nu8_A 54 NTVREAV-AATGATASVIYVPAPFCKDSILEAIDAGIKLIIT 94 (288)
T ss_dssp SSHHHHH-HHHCCCEEEECCCGGGHHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHh-hcCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 2222232 1126899999999999989999999999987454
|
| >3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.24 Score=50.26 Aligned_cols=108 Identities=16% Similarity=0.180 Sum_probs=62.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc-cccccccCCCceeeecCCeE--EECCEEEEEE
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGTDGI--SVDGKVIQVV 144 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk-yDS~~G~f~~~v~~~~~~~i--~v~G~~I~v~ 144 (416)
.||+|.| +|.||++.|+.+.+. +.++|+|+---.+++.++...+ |...+ +-+.++... .+... +.
T Consensus 4 k~i~ILGsTGSIG~~tldVi~~~--~~~~vvaL~a~~n~~~l~~q~~~f~p~~------v~v~~~~~~~~~l~~~---~~ 72 (376)
T 3a06_A 4 RTLVILGATGSIGTQTLDVLKKV--KGIRLIGISFHSNLELAFKIVKEFNVKN------VAITGDVEFEDSSINV---WK 72 (376)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--CSEEEEEEEESSCHHHHHHHHHHHTCCE------EEECSSCCCCCSSSEE---EE
T ss_pred ceEEEECCCCHHHHHHHHHHHhC--CCeEEEEEEccCCHHHHHHHHHHcCCCE------EEEccHHHHHHHHHHH---cc
Confidence 6899999 799999999998876 3599999944335665554432 22211 110011100 00000 10
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
......++- ....+|+|+.++-.+...+-.-..+++| |+|.+.
T Consensus 73 G~~~l~el~-~~~~~D~Vv~AivG~aGL~ptlaAi~aG-K~vaLA 115 (376)
T 3a06_A 73 GSHSIEEML-EALKPDITMVAVSGFSGLRAVLASLEHS-KRVCLA 115 (376)
T ss_dssp STTHHHHHH-HHHCCSEEEECCCSTTHHHHHHHHHHHC-SEEEEC
T ss_pred CHHHHHHHh-cCCCCCEEEEEeeCHHHHHHHHHHHHCC-CEEEEe
Confidence 000000110 1125899999999998888888888998 566663
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.088 Score=49.53 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=27.2
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|+.||.|.| +|.||+.+++.|++++ .+|+++..
T Consensus 10 m~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~l~R 43 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLG---HPTYVFTR 43 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTT---CCEEEEEC
T ss_pred CCCeEEEECCCchHHHHHHHHHHHCC---CcEEEEEC
Confidence 445899999 8999999999999875 57777654
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.16 Score=47.16 Aligned_cols=38 Identities=13% Similarity=0.292 Sum_probs=27.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHH
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQA 109 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~ 109 (416)
++||+|.|+|++|+.+++.+.... +++|.+-|. +.+.+
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g---~~~v~~~~~-~~~~~ 47 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKG---FRIVQVYSR-TEESA 47 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHT---CCEEEEECS-SHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCC---CeEEEEEeC-CHHHH
Confidence 369999999999999999988754 564555443 34443
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.15 E-value=0.077 Score=49.49 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=26.5
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R 36 (313)
T 1qyd_A 5 SRVLIVGGTGYIGKRIVNASISLG---HPTYVLFR 36 (313)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT---CCEEEECC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhCC---CcEEEEEC
Confidence 5899999 8999999999999875 67777754
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.086 Score=49.58 Aligned_cols=100 Identities=16% Similarity=0.053 Sum_probs=54.9
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCC----ChhHHhhhhccccccccCCCceeeecCCeEEECCEEE
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTG----GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVI 141 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~----~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I 141 (416)
|+++|.|.| +|.||+.+++.|.++. .+|+++.... .++....+-.... ..++.+..
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~~~~l~~~~~------~~v~~v~~---------- 63 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFS---HPTFIYARPLTPDSTPSSVQLREEFRS------MGVTIIEG---------- 63 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTT---CCEEEEECCCCTTCCHHHHHHHHHHHH------TTCEEEEC----------
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCC---CcEEEEECCcccccChHHHHHHHHhhc------CCcEEEEe----------
Confidence 346899999 8999999999999875 5777665432 1222222110000 00110000
Q ss_pred EEEeccCCCCCCCCCccccEEEcCCCCC---CCHhhHHHHHHcC-CCEEEE
Q 014890 142 QVVSNRNPVNLPWGDLGIDLVIEGTGVF---VDREGAGKHIQAG-AKKVLI 188 (416)
Q Consensus 142 ~v~~~~~p~~i~W~~~gvDiVie~TG~f---~s~~~a~~hl~aG-AkkVII 188 (416)
...|++.+.-...++|+||.++|.. ..+.-+....++| +|++|.
T Consensus 64 ---D~~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (321)
T 3c1o_A 64 ---EMEEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIKRFLP 111 (321)
T ss_dssp ---CTTCHHHHHHHHTTCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEEC
T ss_pred ---cCCCHHHHHHHHcCCCEEEECCCccchhhHHHHHHHHHHhCCccEEec
Confidence 1122222211123789999999853 2334445555678 999764
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.19 Score=44.09 Aligned_cols=31 Identities=39% Similarity=0.483 Sum_probs=27.0
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||.|-| .|.||+.+++.|.+++ .+|+++..
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g---~~V~~~~R 32 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG---HEVTAIVR 32 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC---CEEEEEEc
Confidence 4899999 8999999999999875 68888764
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.18 Score=43.58 Aligned_cols=31 Identities=29% Similarity=0.240 Sum_probs=26.5
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g---~~V~~~~r 35 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAG---YEVTVLVR 35 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC---CeEEEEEe
Confidence 5899999 7999999999999875 68877754
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.3 Score=41.61 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=61.8
Q ss_pred eeEEEEcc----ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 69 LKVAINGF----GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 69 ikVaINGf----GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
-+|||+|. |++|..+++.|.+.. ++|..||-- ++. +.|.+ .
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~g---~~V~pVnP~-----------~~~------------------i~G~~--~- 49 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHG---HEFIPVGRK-----------KGE------------------VLGKT--I- 49 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHT---CCEEEESSS-----------CSE------------------ETTEE--C-
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHCC---CeEEEECCC-----------CCc------------------CCCee--c-
Confidence 37999993 889999999998764 789889832 222 33432 1
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
-.+..+|| . +|+|+=+++.....+..+...+.|+|.|+++..
T Consensus 50 -y~sl~dlp---~-vDlavi~~p~~~v~~~v~e~~~~g~k~v~~~~G 91 (122)
T 3ff4_A 50 -INERPVIE---G-VDTVTLYINPQNQLSEYNYILSLKPKRVIFNPG 91 (122)
T ss_dssp -BCSCCCCT---T-CCEEEECSCHHHHGGGHHHHHHHCCSEEEECTT
T ss_pred -cCChHHCC---C-CCEEEEEeCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 24566776 3 899999999887777788888899999888654
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.12 Score=47.70 Aligned_cols=97 Identities=11% Similarity=0.090 Sum_probs=54.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
|||.|.| +|.||+.+++.|.+++ ..+|+++... ++....+. + ..++ +......
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~--g~~V~~~~R~--~~~~~~~~--~-------~~v~-------------~~~~D~~ 54 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANH--IDHFHIGVRN--VEKVPDDW--R-------GKVS-------------VRQLDYF 54 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTT--CTTEEEEESS--GGGSCGGG--B-------TTBE-------------EEECCTT
T ss_pred CEEEEEcCCchHHHHHHHHHhhCC--CCcEEEEECC--HHHHHHhh--h-------CCCE-------------EEEcCCC
Confidence 4799999 8999999999988762 2677777542 22111111 0 0111 1111122
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCH--------hhHHHHHHcCCCEEEEcCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDR--------EGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~--------~~a~~hl~aGAkkVIIsap 191 (416)
|++.+.-...++|+||.++|..... .-++...++|++++|...+
T Consensus 55 d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss 106 (289)
T 3e48_A 55 NQESMVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGY 106 (289)
T ss_dssp CHHHHHHHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CHHHHHHHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 3332222234899999999975432 2233444679988776443
|
| >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A | Back alignment and structure |
|---|
Probab=92.37 E-value=0.25 Score=51.21 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=67.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC----------CChhHHhhhhcccccc-ccCCCceeeecCCeEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT----------GGVKQASHLLKYDSTL-GIFEADVKPVGTDGISV 136 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~----------~~~~~~a~LlkyDS~~-G~f~~~v~~~~~~~i~v 136 (416)
..+|+|-|||-+|..+++.|++.. ..||+|.|. .+++.+..|++|-..+ |++.. ..+. +
T Consensus 230 g~~v~VqG~GnVG~~~a~~L~~~G---akvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~----y~~~---~ 299 (449)
T 1bgv_A 230 GKTVALAGFGNVAWGAAKKLAELG---AKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQD----YADK---F 299 (449)
T ss_dssp TCEEEECCSSHHHHHHHHHHHHHT---CEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHH----HHHH---H
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhh----cccc---c
Confidence 468999999999999999998875 799999883 1444666666543322 22211 1110 0
Q ss_pred CCEEEEEEeccCCCCCCCCCccccEEEcCC-CCCCCHhhHHHHHHcCCCEEEE
Q 014890 137 DGKVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 137 ~G~~I~v~~~~~p~~i~W~~~gvDiVie~T-G~f~s~~~a~~hl~aGAkkVII 188 (416)
+.+.+ . ++++ | ...+|+.+-|+ +..++.+.+......|+| +|+
T Consensus 300 ~a~~i---~---~~e~-~-~~~~Dil~P~A~~~~I~~~na~~l~a~g~k-iV~ 343 (449)
T 1bgv_A 300 GVQFF---P---GEKP-W-GQKVDIIMPCATQNDVDLEQAKKIVANNVK-YYI 343 (449)
T ss_dssp TCEEE---E---TCCG-G-GSCCSEEECCSCTTCBCHHHHHHHHHTTCC-EEE
T ss_pred CCEEe---C---chhh-h-cCCcceeeccccccccchhhHHHHHhcCCe-EEE
Confidence 12222 1 2333 7 46899999985 788899999988778885 444
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=92.20 E-value=0.49 Score=42.45 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=27.4
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+||.|-| .|.||+.+++.|.+++ .+|+++..
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G---~~V~~~~R 53 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKG---HEPVAMVR 53 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CCeEEEECCCChHHHHHHHHHHhCC---CeEEEEEC
Confidence 46899999 7999999999999875 68877764
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.1 Score=49.89 Aligned_cols=100 Identities=16% Similarity=0.043 Sum_probs=55.3
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecC--CChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT--GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~--~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
++||.|.| +|.||+.+++.|++++ .+|+++... ..++....+-+... ..++.+.+
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~~~~~l~~------~~v~~~~~------------- 67 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAH---RPTYILARPGPRSPSKAKIFKALED------KGAIIVYG------------- 67 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTT---CCEEEEECSSCCCHHHHHHHHHHHH------TTCEEEEC-------------
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCC---CCEEEEECCCCCChhHHHHHHHHHh------CCcEEEEe-------------
Confidence 46899999 7999999999999875 577777553 23333322211100 01110000
Q ss_pred eccCCCCCCCCCc--cccEEEcCCCCCC---CHhhHHHHHHcC-CCEEEEc
Q 014890 145 SNRNPVNLPWGDL--GIDLVIEGTGVFV---DREGAGKHIQAG-AKKVLIT 189 (416)
Q Consensus 145 ~~~~p~~i~W~~~--gvDiVie~TG~f~---s~~~a~~hl~aG-AkkVIIs 189 (416)
...|++.+..... ++|+||.++|... ...-+....++| +|++|.|
T Consensus 68 Dl~d~~~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v~S 118 (346)
T 3i6i_A 68 LINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPS 118 (346)
T ss_dssp CTTCHHHHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEECS
T ss_pred ecCCHHHHHHHHhhCCCCEEEECCchhhHHHHHHHHHHHHHcCCceEEeec
Confidence 1122222221223 8999999998631 222334444578 9998754
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.14 Score=51.47 Aligned_cols=147 Identities=12% Similarity=0.128 Sum_probs=72.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEecCCChhHHhhhhcccccccc-CCCceeeecCCeEEECCEEEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAINDTGGVKQASHLLKYDSTLGI-FEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaINd~~~~~~~a~LlkyDS~~G~-f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+||+|.|.|.||+.+++.+.+++ ++ ..|.+-+. +.+.+..+.+ . ++. ....+. .+.+ ..
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g--~~~~~V~v~~r-~~~~~~~la~--~-l~~~~~~~~~------------~~~~-D~ 62 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNR--EVFSHITLASR-TLSKCQEIAQ--S-IKAKGYGEID------------ITTV-DA 62 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCT--TTCCEEEEEES-CHHHHHHHHH--H-HHHTTCCCCE------------EEEC-CT
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CCceEEEEEEC-CHHHHHHHHH--H-hhhhcCCceE------------EEEe-cC
Confidence 59999999999999999998764 24 23334333 2333222221 0 100 000011 0000 01
Q ss_pred cCCCCCC--CCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC-CCCCCeEEeecCccCCCC-----CCCeEecC
Q 014890 147 RNPVNLP--WGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG-KGDIPTYVVGVNADAYKP-----DEPIISNA 218 (416)
Q Consensus 147 ~~p~~i~--W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps-kd~~ptvV~gVN~~~y~~-----~~~IISna 218 (416)
.+++++. ..+.++|+||.|+|.+....-+...+++|+. ++-++.. +.+...+.+..- ..+.. .-.++.+.
T Consensus 63 ~d~~~l~~~l~~~~~DvVin~ag~~~~~~v~~a~l~~g~~-vvD~a~~~~~~~~~~~~~~~-~~l~~~a~~aG~~~i~g~ 140 (405)
T 4ina_A 63 DSIEELVALINEVKPQIVLNIALPYQDLTIMEACLRTGVP-YLDTANYEHPDLAKFEYKEQ-WAFHDRYKEKGVMALLGS 140 (405)
T ss_dssp TCHHHHHHHHHHHCCSEEEECSCGGGHHHHHHHHHHHTCC-EEESSCCBCTTCSCBCSHHH-HTTHHHHHHHTCEEEECC
T ss_pred CCHHHHHHHHHhhCCCEEEECCCcccChHHHHHHHHhCCC-EEEecCCCCcccchhhhHHH-HHHHHHHHHhCCEEEEcC
Confidence 1111110 0111479999999999887788888899985 3323222 211111211110 01211 13466777
Q ss_pred CcchhhhHHHHHHHHHH-h
Q 014890 219 SCTTNCLAPFVKVLDQK-F 236 (416)
Q Consensus 219 SCTTn~Lap~lkvL~~~-f 236 (416)
+|--.....++..+.++ |
T Consensus 141 G~~PG~~~l~a~~~~~~~~ 159 (405)
T 4ina_A 141 GFDPGVTNVFCAYAQKHYF 159 (405)
T ss_dssp BTTTBHHHHHHHHHHHHTC
T ss_pred CCCccHHHHHHHHHHHhcc
Confidence 66555544555555554 5
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.64 Score=41.99 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=27.0
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|+.+|.|.| .|.||+.+++.|.++. ..+|+++..
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G--~~~V~~~~R 56 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQ--TIKQTLFAR 56 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCT--TEEEEEEES
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCC--CceEEEEEc
Confidence 456899999 8999999999998864 257766653
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=91.94 E-value=0.19 Score=49.65 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=27.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+||+.+++.+.... ++|++.+-
T Consensus 141 g~tvGIiG~G~IG~~va~~~~~fg---~~v~~~d~ 172 (334)
T 3kb6_A 141 RLTLGVIGTGRIGSRVAMYGLAFG---MKVLCYDV 172 (334)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTT---CEEEEECS
T ss_pred CcEEEEECcchHHHHHHHhhcccC---ceeeecCC
Confidence 468999999999999999998875 88877654
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=91.83 E-value=0.39 Score=45.02 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=25.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
++||+|.|+|.+|+.+++.|.... ...+|++.+
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g-~~~~V~~~d 38 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDH-PHYKIVGYN 38 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHC-TTSEEEEEC
T ss_pred cceEEEEeeCHHHHHHHHHHHhCC-CCcEEEEEc
Confidence 469999999999999999988652 126776665
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=91.72 E-value=0.34 Score=44.65 Aligned_cols=29 Identities=31% Similarity=0.556 Sum_probs=24.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
|||+|.|+|.+|..+++.|.... .+|+..
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g---~~V~~~ 29 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRG---VEVVTS 29 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT---CEEEEC
T ss_pred CeEEEEechHHHHHHHHHHHHCC---CeEEEe
Confidence 48999999999999999998764 676663
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.68 Score=43.17 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=25.6
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.+||.|.| .|.||+.+++.|.++. .+|+++.
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g---~~v~~~~ 34 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRG---DVELVLR 34 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCT---TEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC---CeEEEEe
Confidence 46899999 8999999999998864 5766653
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.52 E-value=0.14 Score=47.53 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=54.6
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCC----ChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTG----GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~----~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
+||.|.| +|.||+.+++.|.+++ .+|+++.... +++....+-.... ..++.+..
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~~~~~~~l~~------~~v~~v~~------------ 63 (308)
T 1qyc_A 5 SRILLIGATGYIGRHVAKASLDLG---HPTFLLVRESTASSNSEKAQLLESFKA------SGANIVHG------------ 63 (308)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCCCCTTTTHHHHHHHHHHHT------TTCEEECC------------
T ss_pred CEEEEEcCCcHHHHHHHHHHHhCC---CCEEEEECCcccccCHHHHHHHHHHHh------CCCEEEEe------------
Confidence 5899999 8999999999999875 5776664321 1332222111100 01110110
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCC---CHhhHHHHHHcC-CCEEEEc
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFV---DREGAGKHIQAG-AKKVLIT 189 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~---s~~~a~~hl~aG-AkkVIIs 189 (416)
...|++.+.-...++|+||.++|... ...-++...++| +|++|.|
T Consensus 64 -D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S 112 (308)
T 1qyc_A 64 -SIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPS 112 (308)
T ss_dssp -CTTCHHHHHHHHHTCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECS
T ss_pred -ccCCHHHHHHHHcCCCEEEECCcchhhhhHHHHHHHHHhcCCCceEeec
Confidence 01222222212237899999998632 233444555678 9998743
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=91.51 E-value=0.23 Score=47.97 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=57.2
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhCCCCCceEE-EEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGRKDSPLEVV-AINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~~~~~~~vV-aINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
..||+|.|. |+.|+.+++.+.+.+ +++| .||--. .+. .+.|. +++.
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g---~~~v~~VnP~~-------------------------~g~--~i~G~--~vy~ 54 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYG---TKIVAGVTPGK-------------------------GGM--EVLGV--PVYD 54 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHT---CEEEEEECTTC-------------------------TTC--EETTE--EEES
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcC---CeEEEEECCCC-------------------------CCc--eECCE--EeeC
Confidence 369999995 999999999887753 7766 555210 000 13342 3332
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
+.++++- +.++|+++.++......+.+...+++|+|.+|+
T Consensus 55 --sl~el~~-~~~~Dv~Ii~vp~~~~~~~~~ea~~~Gi~~vVi 94 (288)
T 1oi7_A 55 --TVKEAVA-HHEVDASIIFVPAPAAADAALEAAHAGIPLIVL 94 (288)
T ss_dssp --SHHHHHH-HSCCSEEEECCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred --CHHHHhh-cCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 2222321 126899999999888888888888999986665
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=91.38 E-value=0.16 Score=50.58 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=28.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|||.|+|+||+.+++.+...+ ++|++.+..
T Consensus 173 gktvGIIGlG~IG~~vA~~l~~~G---~~V~~~dr~ 205 (345)
T 4g2n_A 173 GRRLGIFGMGRIGRAIATRARGFG---LAIHYHNRT 205 (345)
T ss_dssp TCEEEEESCSHHHHHHHHHHHTTT---CEEEEECSS
T ss_pred CCEEEEEEeChhHHHHHHHHHHCC---CEEEEECCC
Confidence 468999999999999999998764 898887753
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.33 E-value=0.77 Score=43.09 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=26.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r 45 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAG---HDLVLIHR 45 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT---CEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEec
Confidence 5999999 8999999999999875 68877754
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=91.20 E-value=0.16 Score=49.84 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=27.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+.... ++|++.+.
T Consensus 139 g~tvGIiG~G~IG~~vA~~l~~~G---~~V~~~dr 170 (315)
T 3pp8_A 139 EFSVGIMGAGVLGAKVAESLQAWG---FPLRCWSR 170 (315)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTT---CCEEEEES
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC---CEEEEEcC
Confidence 468999999999999999998764 78888774
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=90.98 E-value=0.19 Score=49.48 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=28.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+...+ ++|++.+.
T Consensus 137 gktvGIiGlG~IG~~vA~~l~~~G---~~V~~~dr 168 (324)
T 3evt_A 137 GQQLLIYGTGQIGQSLAAKASALG---MHVIGVNT 168 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CCeEEEECcCHHHHHHHHHHHhCC---CEEEEECC
Confidence 468999999999999999998775 89988875
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=90.88 E-value=0.19 Score=48.92 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=27.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+...+ ++|++.+.
T Consensus 124 g~~vgIIG~G~IG~~~A~~l~~~G---~~V~~~dr 155 (303)
T 1qp8_A 124 GEKVAVLGLGEIGTRVGKILAALG---AQVRGFSR 155 (303)
T ss_dssp TCEEEEESCSTHHHHHHHHHHHTT---CEEEEECS
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999998764 78877663
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=90.87 E-value=0.15 Score=47.28 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=25.6
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~R 34 (307)
T 2gas_A 3 NKILILGPTGAIGRHIVWASIKAG---NPTYALVR 34 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHHT---CCEEEEEC
T ss_pred cEEEEECCCchHHHHHHHHHHhCC---CcEEEEEC
Confidence 4899999 8999999999999874 56666643
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=90.77 E-value=0.2 Score=49.50 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=28.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+...+ ++|++.+.
T Consensus 140 g~tvGIIGlG~IG~~vA~~l~~~G---~~V~~~dr 171 (324)
T 3hg7_A 140 GRTLLILGTGSIGQHIAHTGKHFG---MKVLGVSR 171 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEEEECS
T ss_pred cceEEEEEECHHHHHHHHHHHhCC---CEEEEEcC
Confidence 468999999999999999998765 89888875
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=90.77 E-value=0.2 Score=49.28 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=27.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+.... ++|++.+.
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~G---~~V~~~d~ 177 (331)
T 1xdw_A 146 NCTVGVVGLGRIGRVAAQIFHGMG---ATVIGEDV 177 (331)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTT---CEEEEECS
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999998764 78877764
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=90.63 E-value=0.2 Score=49.24 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=27.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+...+ ++|++.+.
T Consensus 145 g~~vgIiG~G~IG~~~A~~l~~~G---~~V~~~d~ 176 (333)
T 1dxy_A 145 QQTVGVMGTGHIGQVAIKLFKGFG---AKVIAYDP 176 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTT---CEEEEECS
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999998765 78877764
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.60 E-value=0.29 Score=39.92 Aligned_cols=31 Identities=23% Similarity=0.496 Sum_probs=26.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||+|.|+|++|+.+++.|.+.. .+|+.+..
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g---~~v~~~d~ 35 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKG---HDIVLIDI 35 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEEC
Confidence 58999999999999999998764 68877754
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=90.58 E-value=0.21 Score=49.81 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=27.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+.... ++|++.+-
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~G---~~V~~~d~ 191 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAFG---MNVLVWGR 191 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEEEECS
T ss_pred CCEEEEEeECHHHHHHHHHHHhCC---CEEEEECC
Confidence 468999999999999999998775 89888874
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=90.53 E-value=0.21 Score=49.67 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=28.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|||.|+|+||+.+++.+.... ++|++.+..
T Consensus 148 gktvgIiGlG~IG~~vA~~l~~~G---~~V~~~d~~ 180 (343)
T 2yq5_A 148 NLTVGLIGVGHIGSAVAEIFSAMG---AKVIAYDVA 180 (343)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTT---CEEEEECSS
T ss_pred CCeEEEEecCHHHHHHHHHHhhCC---CEEEEECCC
Confidence 468999999999999999998775 898888753
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.43 E-value=0.25 Score=41.10 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=29.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHh
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQAS 110 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a 110 (416)
.+|.|.|+|++|+.+++.|.+++ .+|+++.. +++.+.
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~g---~~V~~id~--~~~~~~ 43 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAAG---KKVLAVDK--SKEKIE 43 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT---CCEEEEES--CHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CeEEEEEC--CHHHHH
Confidence 48999999999999999998875 68887764 344443
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.40 E-value=0.23 Score=49.17 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=28.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|||.|+|+||+.+++.+.... ++|++.+-.
T Consensus 165 g~tvgIIGlG~IG~~vA~~l~~~G---~~V~~~d~~ 197 (335)
T 2g76_A 165 GKTLGILGLGRIGREVATRMQSFG---MKTIGYDPI 197 (335)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTT---CEEEEECSS
T ss_pred cCEEEEEeECHHHHHHHHHHHHCC---CEEEEECCC
Confidence 468999999999999999988764 898888753
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=90.20 E-value=0.23 Score=46.57 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=25.4
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|++||+|.|+|.+|+.+++.|.... .+|..++
T Consensus 4 M~m~i~iiG~G~~G~~~a~~l~~~g---~~V~~~~ 35 (299)
T 1vpd_A 4 MTMKVGFIGLGIMGKPMSKNLLKAG---YSLVVSD 35 (299)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTT---CEEEEEC
T ss_pred ccceEEEECchHHHHHHHHHHHhCC---CEEEEEe
Confidence 6679999999999999999998764 6766554
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=90.19 E-value=0.21 Score=49.78 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=27.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+.... ++|++.+-
T Consensus 164 gktvGIIG~G~IG~~vA~~l~~~G---~~V~~~dr 195 (351)
T 3jtm_A 164 GKTIGTVGAGRIGKLLLQRLKPFG---CNLLYHDR 195 (351)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGC---CEEEEECS
T ss_pred CCEEeEEEeCHHHHHHHHHHHHCC---CEEEEeCC
Confidence 468999999999999999998764 88877764
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=90.13 E-value=0.27 Score=51.34 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=26.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
..+|+|.|+|.||+.+++.+.... .+|++++
T Consensus 274 GktV~IiG~G~IG~~~A~~lka~G---a~Viv~d 304 (494)
T 3ce6_A 274 GKKVLICGYGDVGKGCAEAMKGQG---ARVSVTE 304 (494)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEEEEC
T ss_pred cCEEEEEccCHHHHHHHHHHHHCC---CEEEEEe
Confidence 458999999999999999998765 6877665
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=90.10 E-value=0.25 Score=48.28 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=27.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+...+ ++|++.+.
T Consensus 146 g~~vgIIG~G~IG~~~A~~l~~~G---~~V~~~d~ 177 (320)
T 1gdh_A 146 NKTLGIYGFGSIGQALAKRAQGFD---MDIDYFDT 177 (320)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTT---CEEEEECS
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999998764 78888875
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=90.09 E-value=0.19 Score=49.51 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=27.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|||.|+|+||+.+++.+...+ ++|++.+-.
T Consensus 145 g~tvGIIG~G~IG~~vA~~l~~~G---~~V~~~d~~ 177 (330)
T 4e5n_A 145 NATVGFLGMGAIGLAMADRLQGWG---ATLQYHEAK 177 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHTTTSC---CEEEEECSS
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC---CEEEEECCC
Confidence 468999999999999999887654 898877653
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=89.99 E-value=0.25 Score=49.03 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=27.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+.... ++|++.+.
T Consensus 168 g~tvGIIG~G~IG~~vA~~l~~~G---~~V~~~d~ 199 (347)
T 1mx3_A 168 GETLGIIGLGRVGQAVALRAKAFG---FNVLFYDP 199 (347)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTT---CEEEEECT
T ss_pred CCEEEEEeECHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999998764 78877764
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=89.96 E-value=0.36 Score=48.38 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=27.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|+|.|||.||+.+++.+.+.. ..|+ +.|.
T Consensus 175 GktV~I~G~GnVG~~~A~~l~~~G---akVv-vsD~ 206 (355)
T 1c1d_A 175 GLTVLVQGLGAVGGSLASLAAEAG---AQLL-VADT 206 (355)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEE-EECS
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEE-EEeC
Confidence 358999999999999999998875 7888 7776
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.94 E-value=0.34 Score=48.70 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=27.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|||.|+|+||+.+++.+...+ ++|++.+..
T Consensus 176 gktvGIIGlG~IG~~vA~~l~~fG---~~V~~~d~~ 208 (365)
T 4hy3_A 176 GSEIGIVGFGDLGKALRRVLSGFR---ARIRVFDPW 208 (365)
T ss_dssp SSEEEEECCSHHHHHHHHHHTTSC---CEEEEECSS
T ss_pred CCEEEEecCCcccHHHHHhhhhCC---CEEEEECCC
Confidence 468999999999999999887654 898887754
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=89.91 E-value=0.21 Score=48.52 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=27.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+.... ++|++.+.
T Consensus 122 g~tvGIIGlG~IG~~vA~~l~~~G---~~V~~~dr 153 (290)
T 3gvx_A 122 GKALGILGYGGIGRRVAHLAKAFG---MRVIAYTR 153 (290)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHT---CEEEEECS
T ss_pred cchheeeccCchhHHHHHHHHhhC---cEEEEEec
Confidence 468999999999999999998764 89888875
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.90 E-value=0.26 Score=48.94 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=26.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+...+ ++|++.|-
T Consensus 171 gktiGIIGlG~IG~~vA~~l~~~G---~~V~~~dr 202 (340)
T 4dgs_A 171 GKRIGVLGLGQIGRALASRAEAFG---MSVRYWNR 202 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTT---CEEEEECS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEcC
Confidence 468999999999999999988764 78876663
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.83 E-value=0.28 Score=44.64 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=27.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
++||+|.|.|.+|+.+++.|.+.. .+|+.+.|.
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g---~~V~~v~~r 55 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQ---IPAIIANSR 55 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTT---CCEEEECTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEEECC
Confidence 579999999999999999998764 677775554
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.81 E-value=0.27 Score=47.91 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=27.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+...+ ++|++.+.
T Consensus 144 g~~vgIIG~G~IG~~~A~~l~~~G---~~V~~~d~ 175 (311)
T 2cuk_A 144 GLTLGLVGMGRIGQAVAKRALAFG---MRVVYHAR 175 (311)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEEEECS
T ss_pred CCEEEEEEECHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999998764 78877664
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=89.65 E-value=0.28 Score=47.62 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=28.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|||.|+|+||+.+++.+.... ++|++.+..
T Consensus 142 g~~vgIiG~G~IG~~~A~~l~~~G---~~V~~~d~~ 174 (307)
T 1wwk_A 142 GKTIGIIGFGRIGYQVAKIANALG---MNILLYDPY 174 (307)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEEEECSS
T ss_pred CceEEEEccCHHHHHHHHHHHHCC---CEEEEECCC
Confidence 468999999999999999998765 788877754
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=89.64 E-value=0.26 Score=46.76 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=27.7
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
++||.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r 57 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLLKLN---QVVIGLDN 57 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEEC
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 57999999 8999999999999875 68888764
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=89.63 E-value=1.3 Score=42.15 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=25.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCc--eEEEEe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPL--EVVAIN 101 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~--~vVaIN 101 (416)
+++||+|.|.|.+|..++..|.... . +|+.+.
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g---~~~~V~l~d 39 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRG---IAREIVLED 39 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT---CCSEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC---CCCEEEEEe
Confidence 3479999999999999998887764 4 666554
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=89.62 E-value=0.26 Score=45.44 Aligned_cols=44 Identities=9% Similarity=0.177 Sum_probs=29.8
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCC-CCceEEEEecCCChhHHhhh
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAINDTGGVKQASHL 112 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~-~~~~vVaINd~~~~~~~a~L 112 (416)
|++||+|.|+|.+|+.+++.|..... +.-+|...+- +.+.+..+
T Consensus 1 M~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r--~~~~~~~~ 45 (247)
T 3gt0_A 1 MDKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDL--NTANLKNA 45 (247)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECS--CHHHHHHH
T ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeC--CHHHHHHH
Confidence 55799999999999999999987641 0116655543 34444333
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=0.3 Score=48.01 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=28.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|||.|+|+||+.+++.+.... ++|++.+..
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~G---~~V~~~d~~ 178 (333)
T 1j4a_A 146 DQVVGVVGTGHIGQVFMQIMEGFG---AKVITYDIF 178 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTT---CEEEEECSS
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC---CEEEEECCC
Confidence 468999999999999999998764 788887754
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=89.24 E-value=0.32 Score=47.40 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=28.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|||.|+|+||+.+++.+...+ ++|++.+..
T Consensus 142 g~~vgIIG~G~IG~~~A~~l~~~G---~~V~~~d~~ 174 (313)
T 2ekl_A 142 GKTIGIVGFGRIGTKVGIIANAMG---MKVLAYDIL 174 (313)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHTT---CEEEEECSS
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC---CEEEEECCC
Confidence 468999999999999999998764 788877754
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=89.20 E-value=0.34 Score=49.52 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=29.5
Q ss_pred ceeEEEEccChhHHHHHHHHHh-CCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHG-RKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~-~~~~~~~vVaINd~ 103 (416)
..+|+|.|||+||+.+++.+.+ .. ++|++++|.
T Consensus 212 gktvgI~G~G~VG~~vA~~l~~~~G---~kVv~~sD~ 245 (419)
T 1gtm_A 212 GKTIAIQGYGNAGYYLAKIMSEDFG---MKVVAVSDS 245 (419)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---CEEEEEECS
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhcC---CEEEEEeCC
Confidence 4689999999999999999988 65 899999986
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=89.13 E-value=0.31 Score=49.43 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=27.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+.... ++|++.+-
T Consensus 145 gktlGiIGlG~IG~~vA~~l~~~G---~~V~~~d~ 176 (404)
T 1sc6_A 145 GKKLGIIGYGHIGTQLGILAESLG---MYVYFYDI 176 (404)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEEEECS
T ss_pred CCEEEEEeECHHHHHHHHHHHHCC---CEEEEEcC
Confidence 468999999999999999998765 88877764
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=89.10 E-value=0.33 Score=45.18 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=26.8
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+++|.|.| +|.||+.+++.|.+++ ..+|+++..
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~~V~~~~R 38 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDG--TFKVRVVTR 38 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHC--SSEEEEEES
T ss_pred CCEEEEECCCchHHHHHHHHHHhcC--CceEEEEEc
Confidence 36899999 8999999999998764 267877764
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=89.10 E-value=0.32 Score=49.29 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=26.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
..+|||.|+|+||+.+++.+...+ ++|++.+
T Consensus 119 gktvGIIGlG~IG~~vA~~l~a~G---~~V~~~d 149 (381)
T 3oet_A 119 DRTIGIVGVGNVGSRLQTRLEALG---IRTLLCD 149 (381)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHTT---CEEEEEC
T ss_pred CCEEEEEeECHHHHHHHHHHHHCC---CEEEEEC
Confidence 468999999999999999998775 8887775
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=89.04 E-value=1.1 Score=46.17 Aligned_cols=94 Identities=20% Similarity=0.408 Sum_probs=58.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCC---------ChhHHhhhhccccccccCCCceeeecCCeEEECC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG---------GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG 138 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~---------~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G 138 (416)
..||+|-|||-+|+.+++.|.+.. ..||+|.|.. +++.+..+. ..+|+... ..+ .
T Consensus 235 g~~vaVqGfGnVG~~~a~~L~e~G---akvVavsD~~G~i~dp~Gld~~~l~~~~---~~~g~i~~----y~~------a 298 (440)
T 3aog_A 235 GARVAIQGFGNVGNAAARAFHDHG---ARVVAVQDHTGTVYNEAGIDPYDLLRHV---QEFGGVRG----YPK------A 298 (440)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEEEEECSSCEEECTTCCCHHHHHHHH---HHTSSSTT----CTT------S
T ss_pred CCEEEEeccCHHHHHHHHHHHHCC---CEEEEEEcCCcEEECCCCCCHHHHHHHH---HhcCCccc----CCC------c
Confidence 478999999999999999999875 7999999863 344333322 22343221 111 1
Q ss_pred EEEEEEeccCCCCCCCCCccccEEEcCC-CCCCCHhhHHHHHHcCCCEEEEc
Q 014890 139 KVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 139 ~~I~v~~~~~p~~i~W~~~gvDiVie~T-G~f~s~~~a~~hl~aGAkkVIIs 189 (416)
+.+ +++++ |. ..+|+++.|+ +..++.+.|... +|| +|+-
T Consensus 299 ~~i------~~~ei-~~-~~~DIlvPcA~~n~i~~~na~~l---~ak-~VvE 338 (440)
T 3aog_A 299 EPL------PAADF-WG-LPVEFLVPAALEKQITEQNAWRI---RAR-IVAE 338 (440)
T ss_dssp EEC------CHHHH-TT-CCCSEEEECSSSSCBCTTTGGGC---CCS-EEEC
T ss_pred eEc------Cchhh-hc-CCCcEEEecCCcCccchhhHHHc---CCc-EEEe
Confidence 111 11222 63 5899999995 556777777654 664 3443
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=89.00 E-value=0.38 Score=45.53 Aligned_cols=35 Identities=17% Similarity=0.404 Sum_probs=29.0
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
++||.|-| .|.||+.+++.|+++. ..++|++++..
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~g-~~~~v~~~~~~ 59 (346)
T 4egb_A 24 AMNILVTGGAGFIGSNFVHYMLQSY-ETYKIINFDAL 59 (346)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHC-TTEEEEEEECC
T ss_pred CCeEEEECCccHHHHHHHHHHHhhC-CCcEEEEEecc
Confidence 46899999 8999999999999864 24888888753
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.96 E-value=0.33 Score=49.06 Aligned_cols=31 Identities=16% Similarity=0.379 Sum_probs=26.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
..+|||.|+|+||+.+++.+...+ ++|++.+
T Consensus 116 g~tvGIIGlG~IG~~vA~~l~~~G---~~V~~~d 146 (380)
T 2o4c_A 116 ERTYGVVGAGQVGGRLVEVLRGLG---WKVLVCD 146 (380)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHTT---CEEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCC---CEEEEEc
Confidence 468999999999999999998764 7887765
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=88.91 E-value=0.38 Score=40.89 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=27.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|.|.|+|++|+.+++.|.+.+ .+|++|..
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g---~~V~vid~ 34 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRG---QNVTVISN 34 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC---CCEEEEEC
Confidence 357999999999999999998865 68887864
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=88.82 E-value=0.35 Score=47.75 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=27.0
Q ss_pred ceeEEEEccChhHHHHHHHHH-hCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~-~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+. ... ++|++.+-
T Consensus 163 g~~vgIIG~G~IG~~vA~~l~~~~G---~~V~~~d~ 195 (348)
T 2w2k_A 163 GHVLGAVGLGAIQKEIARKAVHGLG---MKLVYYDV 195 (348)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---CEEEEECS
T ss_pred CCEEEEEEECHHHHHHHHHHHHhcC---CEEEEECC
Confidence 468999999999999999998 664 78877764
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=88.76 E-value=0.29 Score=44.15 Aligned_cols=31 Identities=35% Similarity=0.339 Sum_probs=27.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||.|.|+|++|+.+++.|.+++ .+++.|..
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g---~~v~vid~ 31 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRK---YGVVIINK 31 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTT---CCEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEEC
Confidence 48999999999999999998875 68888874
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=88.72 E-value=0.38 Score=44.89 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=26.3
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|++||+|.|.|.+|..+++.|.... .+|..++.
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g---~~V~~~~r 34 (316)
T 2ew2_A 2 NAMKIAIAGAGAMGSRLGIMLHQGG---NDVTLIDQ 34 (316)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTT---CEEEEECS
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCC---CcEEEEEC
Confidence 4579999999999999999998764 57777753
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=88.28 E-value=0.35 Score=47.71 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=25.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
..+|||.|+|+||+.+++.+...+ ++|.+.+
T Consensus 164 g~~vgIIG~G~iG~~vA~~l~~~G---~~V~~~d 194 (333)
T 3ba1_A 164 GKRVGIIGLGRIGLAVAERAEAFD---CPISYFS 194 (333)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTT---CCEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEC
Confidence 458999999999999999998764 6776655
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=88.21 E-value=0.35 Score=49.03 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=27.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|||.|+|+||+.+++.+.... ++|++.+..
T Consensus 191 gktvGIIGlG~IG~~vA~~l~a~G---~~V~~~d~~ 223 (393)
T 2nac_A 191 AMHVGTVAAGRIGLAVLRRLAPFD---VHLHYTDRH 223 (393)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGT---CEEEEECSS
T ss_pred CCEEEEEeECHHHHHHHHHHHhCC---CEEEEEcCC
Confidence 468999999999999999988764 888887753
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=88.06 E-value=0.36 Score=47.14 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=27.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.++|||.|+|+||+.+++.+.... ++|++.+.
T Consensus 155 g~~vgIIG~G~iG~~iA~~l~~~G---~~V~~~d~ 186 (330)
T 2gcg_A 155 QSTVGIIGLGRIGQAIARRLKPFG---VQRFLYTG 186 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGT---CCEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999988764 78877764
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=87.97 E-value=0.43 Score=46.77 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=27.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|||.|+|+||+.+++.+.... ++|++.+-.
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~~~G---~~V~~~d~~ 182 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAKGFN---MRILYYSRT 182 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEEEECSS
T ss_pred CCEEEEEccCHHHHHHHHHHHhCC---CEEEEECCC
Confidence 468999999999999999998764 788777653
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=87.84 E-value=0.39 Score=47.14 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=27.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|||.|+|+||+.+++.+.... ++|++.+..
T Consensus 146 g~~vgIIG~G~iG~~vA~~l~~~G---~~V~~~d~~ 178 (333)
T 2d0i_A 146 GKKVGILGMGAIGKAIARRLIPFG---VKLYYWSRH 178 (333)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGT---CEEEEECSS
T ss_pred cCEEEEEccCHHHHHHHHHHHHCC---CEEEEECCC
Confidence 468999999999999999988764 788777643
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=87.69 E-value=0.46 Score=43.17 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=26.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+++||+|.|+|.+|+.+++.|.... .+|++++.
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g---~~V~~~~r 59 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSG---FKVVVGSR 59 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTT---CCEEEEES
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 3469999999999999999998764 57766653
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=87.59 E-value=1.3 Score=40.46 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=25.2
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
||.|.| .|.||+.+++.|.++. +..+|+++..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~-~g~~V~~~~r 33 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTV-PASQIVAIVR 33 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTS-CGGGEEEEES
T ss_pred CEEEEcCCchHHHHHHHHHHhhC-CCceEEEEEc
Confidence 578999 8999999999998861 1268877754
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=87.55 E-value=0.92 Score=43.02 Aligned_cols=70 Identities=24% Similarity=0.232 Sum_probs=49.2
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
.||-+|+| .||+||.+.+++..+ ++++|+.=|. . . .
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~~~~---~~elv~~id~--------------~--------~-~----------------- 48 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVFSEK---GHELVLKVDV--------------N--------G-V----------------- 48 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEEET--------------T--------E-E-----------------
T ss_pred cceeEEEEecCHHHHHHHHHHhCC---CCEEEEEEcC--------------C--------C-c-----------------
Confidence 46899999 699999998876443 3898876432 0 0 0
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEE
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVI 187 (416)
.++ .+.|+|||=|-.....+.++..++.|.+-||
T Consensus 49 ---~~l----~~~DVvIDFT~P~a~~~~~~~~~~~g~~~Vi 82 (228)
T 1vm6_A 49 ---EEL----DSPDVVIDFSSPEALPKTVDLCKKYRAGLVL 82 (228)
T ss_dssp ---EEC----SCCSEEEECSCGGGHHHHHHHHHHHTCEEEE
T ss_pred ---ccc----cCCCEEEECCCHHHHHHHHHHHHHcCCCEEE
Confidence 011 1469999888777777888888889985443
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.53 E-value=0.52 Score=43.31 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=27.4
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|+|||.|.| .|.||+.+++.|.+++ .+|+++.
T Consensus 4 M~m~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~ 36 (287)
T 3sc6_A 4 MKERVIITGANGQLGKQLQEELNPEE---YDIYPFD 36 (287)
T ss_dssp -CEEEEEESTTSHHHHHHHHHSCTTT---EEEEEEC
T ss_pred ceeEEEEECCCCHHHHHHHHHHHhCC---CEEEEec
Confidence 667999999 8999999999998874 7888885
|
| >3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=87.43 E-value=1.2 Score=46.25 Aligned_cols=103 Identities=16% Similarity=0.217 Sum_probs=64.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC---------CChhHHhhhhcccccc-ccCCCceeeecCCeEEEC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT---------GGVKQASHLLKYDSTL-GIFEADVKPVGTDGISVD 137 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~---------~~~~~~a~LlkyDS~~-G~f~~~v~~~~~~~i~v~ 137 (416)
..+|+|-|||-+|..+++.|.+.. -.||+|.|. .+++.+..+.++...+ ++...-++ + ..+
T Consensus 239 g~~VaVQG~GnVG~~aa~~L~e~G---akvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~---~---~~~ 309 (456)
T 3r3j_A 239 NKKCLVSGSGNVAQYLVEKLIEKG---AIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLK---Y---SKT 309 (456)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHHT---CCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGG---T---CSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhh---c---CCC
Confidence 468999999999999999988764 578888884 2455555544332221 11111000 0 001
Q ss_pred CEEEEEEeccCCCCCCCCCccccEEEcC-CCCCCCHhhHHHHHHcCCCEEEE
Q 014890 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEG-TGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 138 G~~I~v~~~~~p~~i~W~~~gvDiVie~-TG~f~s~~~a~~hl~aGAkkVII 188 (416)
.+.+ +++++ |. ..+||.+=| ++..++.+.++.-++.+|| +|+
T Consensus 310 a~~v------~~~~i-~~-~~~DI~iPcA~~~~I~~~na~~l~~~~ak-~V~ 352 (456)
T 3r3j_A 310 AKYF------ENQKP-WN-IPCDIAFPCATQNEINENDADLFIQNKCK-MIV 352 (456)
T ss_dssp CEEE------CSCCG-GG-SCCSEEEECSCTTCBCHHHHHHHHHHTCC-EEE
T ss_pred ceEe------CCccc-cc-cCccEEEeCCCccchhhHHHHHHHhcCCe-EEE
Confidence 1211 12332 64 589999988 6788899999988777885 344
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=87.40 E-value=0.71 Score=44.68 Aligned_cols=86 Identities=15% Similarity=0.187 Sum_probs=56.8
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhCCCCCceEE-EEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGRKDSPLEVV-AINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~~~~~~~vV-aINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
+.|++|.|. |+.|+.+++.+.+.+ +++| .||-- . .+.. +.|. +++.
T Consensus 13 ~~~v~V~Gasg~~G~~~~~~l~~~g---~~~V~~VnP~-~------------------------~g~~--i~G~--~vy~ 60 (294)
T 2yv1_A 13 NTKAIVQGITGRQGSFHTKKMLECG---TKIVGGVTPG-K------------------------GGQN--VHGV--PVFD 60 (294)
T ss_dssp TCCEEEETTTSHHHHHHHHHHHHTT---CCEEEEECTT-C------------------------TTCE--ETTE--EEES
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCC---CeEEEEeCCC-C------------------------CCce--ECCE--eeeC
Confidence 468999995 999999999988753 5655 55521 0 0011 2342 3332
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
+.++++- +.++|+++.++......+.+...+++|+|.+|+
T Consensus 61 --sl~el~~-~~~~Dv~ii~vp~~~~~~~v~ea~~~Gi~~vVi 100 (294)
T 2yv1_A 61 --TVKEAVK-ETDANASVIFVPAPFAKDAVFEAIDAGIELIVV 100 (294)
T ss_dssp --SHHHHHH-HHCCCEEEECCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred --CHHHHhh-cCCCCEEEEccCHHHHHHHHHHHHHCCCCEEEE
Confidence 2233321 126899999999988888888888999986555
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=87.30 E-value=0.92 Score=44.06 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=26.6
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+++|.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R 37 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVG---HHVRAQVH 37 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTT---CCEEEEES
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEEC
Confidence 46899999 8999999999999864 67777653
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=87.24 E-value=0.52 Score=44.83 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=30.8
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhh
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHL 112 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~L 112 (416)
|++||+|.|+|.+|+.+.+.|.+.. .+|+..|- +++.+..+
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G---~~V~~~dr--~~~~~~~~ 46 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAG---LSTWGADL--NPQACANL 46 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT---CEEEEECS--CHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC---CeEEEEEC--CHHHHHHH
Confidence 4579999999999999999998865 68877753 34444443
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=87.17 E-value=0.55 Score=44.73 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=27.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|+|.|+|+||+.+++.+.... ++|.+.|-
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~~~G---~~V~~~dr 186 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFAALG---AKVKVGAR 186 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCC---CEEEEEEC
Confidence 468999999999999999998765 68877774
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=87.08 E-value=0.5 Score=48.39 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=27.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+...+ ++|++.+-
T Consensus 156 gktvGIIGlG~IG~~vA~~l~~~G---~~V~~yd~ 187 (416)
T 3k5p_A 156 GKTLGIVGYGNIGSQVGNLAESLG---MTVRYYDT 187 (416)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEEEECT
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999998775 88877763
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=87.07 E-value=0.41 Score=47.71 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=26.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCce-EEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaINd 102 (416)
..+|||.|+|+||+.+++.+.... ++ |++.+-
T Consensus 164 g~tvgIIG~G~IG~~vA~~l~~~G---~~~V~~~d~ 196 (364)
T 2j6i_A 164 GKTIATIGAGRIGYRVLERLVPFN---PKELLYYDY 196 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGC---CSEEEEECS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC---CcEEEEECC
Confidence 468999999999999999988764 76 877764
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=87.03 E-value=0.51 Score=45.65 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=25.4
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
|++||+|.|.|.+|..++..+...+. ++ |.+-|.
T Consensus 1 M~~kI~VIGaG~vG~~~a~~la~~g~--~~-v~L~Di 34 (309)
T 1ur5_A 1 MRKKISIIGAGFVGSTTAHWLAAKEL--GD-IVLLDI 34 (309)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC--SE-EEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--Ce-EEEEeC
Confidence 55799999999999999998877642 47 444454
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=86.83 E-value=2.9 Score=39.38 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=25.8
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
++||.|-| .|-||+.+++.|.+++ .+|+++..
T Consensus 19 ~~~vlVtGatG~iG~~l~~~L~~~G---~~V~~~~r 51 (347)
T 4id9_A 19 SHMILVTGSAGRVGRAVVAALRTQG---RTVRGFDL 51 (347)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTT---CCEEEEES
T ss_pred CCEEEEECCCChHHHHHHHHHHhCC---CEEEEEeC
Confidence 46899999 7999999999999875 67777753
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.78 E-value=1.2 Score=46.19 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=29.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhh
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHL 112 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~L 112 (416)
.||||.|.|.+|..++..+.... ++|+..+- +.+.+..+
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~aG---~~V~l~D~--~~e~l~~~ 44 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASHG---HQVLLYDI--SAEALTRA 44 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT---CCEEEECS--CHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCC---CeEEEEEC--CHHHHHHH
Confidence 48999999999999999988764 67776653 44444443
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=86.76 E-value=1 Score=43.47 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=51.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-+|.|+|.|.||...+..+.... .+|+++... .+.+.++.+ +|. +.+ + .+
T Consensus 178 ~~VlV~GaG~vG~~a~qla~~~G---a~Vi~~~~~--~~~~~~~~~----lGa----------~~v------~-----~~ 227 (348)
T 3two_A 178 TKVGVAGFGGLGSMAVKYAVAMG---AEVSVFARN--EHKKQDALS----MGV----------KHF------Y-----TD 227 (348)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT---CEEEEECSS--STTHHHHHH----TTC----------SEE------E-----SS
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEeCC--HHHHHHHHh----cCC----------Cee------c-----CC
Confidence 47999999999999998887764 588777532 222223222 221 111 1 12
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
++.+ .+ ++|+||||+|.-...+.+-..++.|.
T Consensus 228 ~~~~--~~-~~D~vid~~g~~~~~~~~~~~l~~~G 259 (348)
T 3two_A 228 PKQC--KE-ELDFIISTIPTHYDLKDYLKLLTYNG 259 (348)
T ss_dssp GGGC--CS-CEEEEEECCCSCCCHHHHHTTEEEEE
T ss_pred HHHH--hc-CCCEEEECCCcHHHHHHHHHHHhcCC
Confidence 3222 22 89999999998766666666666555
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=86.64 E-value=0.46 Score=41.36 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=27.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhC-CCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGR-KDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~-~~~~~~vVaINd 102 (416)
..+|.|.|+|++|+.+++.|.+. + .+|+++..
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g---~~V~vid~ 71 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYG---KISLGIEI 71 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHC---SCEEEEES
T ss_pred CCcEEEECCCHHHHHHHHHHHhccC---CeEEEEEC
Confidence 46899999999999999999875 5 68888864
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=86.57 E-value=1.6 Score=42.21 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=47.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
..||||.|.|.+|..+++.+. .. ++|+..|- +++.+..+.+. + .... .+| +... .
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG---~~V~v~d~--~~~~~~~~~~~---l---~~~~---------~~~--i~~~--~ 66 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SK---HEVVLQDV--SEKALEAAREQ---I---PEEL---------LSK--IEFT--T 66 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TT---SEEEEECS--CHHHHHHHHHH---S---CGGG---------GGG--EEEE--S
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cC---CEEEEEEC--CHHHHHHHHHH---H---HHHH---------hCC--eEEe--C
Confidence 369999999999999999998 64 78887774 45555555432 0 0000 001 2221 3
Q ss_pred CCCCCCCCCccccEEEcCCCCCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVD 171 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s 171 (416)
+++.+ .++|+||||...-..
T Consensus 67 ~~~~~----~~aDlVieavpe~~~ 86 (293)
T 1zej_A 67 TLEKV----KDCDIVMEAVFEDLN 86 (293)
T ss_dssp SCTTG----GGCSEEEECCCSCHH
T ss_pred CHHHH----cCCCEEEEcCcCCHH
Confidence 44432 489999999987554
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=86.47 E-value=0.63 Score=44.40 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=27.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|+|.|+|+||+.+++.+.... ++|.+.+-
T Consensus 157 g~~v~IiG~G~iG~~~a~~l~~~G---~~V~~~d~ 188 (300)
T 2rir_A 157 GSQVAVLGLGRTGMTIARTFAALG---ANVKVGAR 188 (300)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CCEEEEEcccHHHHHHHHHHHHCC---CEEEEEEC
Confidence 468999999999999999998775 68877774
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=86.42 E-value=1.1 Score=43.35 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=56.9
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhCCCCCceEE-EEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGRKDSPLEVV-AINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~~~~~~~vV-aINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
+.||+|.|. |+.|+.+++.+.+.+ +++| .||-- . .++ .+.|. +++.
T Consensus 13 ~~~vvV~Gasg~~G~~~~~~l~~~g---~~~v~~VnP~-~------------------------~g~--~i~G~--~vy~ 60 (297)
T 2yv2_A 13 ETRVLVQGITGREGSFHAKAMLEYG---TKVVAGVTPG-K------------------------GGS--EVHGV--PVYD 60 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHT---CEEEEEECTT-C------------------------TTC--EETTE--EEES
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCC---CcEEEEeCCC-C------------------------CCc--eECCE--eeeC
Confidence 468999995 999999999888753 6654 55521 0 001 02342 3332
Q ss_pred ccCCCCCCCCCcc-ccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 146 NRNPVNLPWGDLG-IDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 146 ~~~p~~i~W~~~g-vDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
+.++++- +.+ +|+++.++......+.+...+++|+|.+|+
T Consensus 61 --sl~el~~-~~~~~DvaIi~vp~~~~~~~v~ea~~~Gi~~vVi 101 (297)
T 2yv2_A 61 --SVKEALA-EHPEINTSIVFVPAPFAPDAVYEAVDAGIRLVVV 101 (297)
T ss_dssp --SHHHHHH-HCTTCCEEEECCCGGGHHHHHHHHHHTTCSEEEE
T ss_pred --CHHHHhh-cCCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 2233321 113 899999999998888889999999996665
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=86.23 E-value=0.43 Score=44.54 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=25.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
+||+|.|+|.+|+.+++.|.... .+|+.++
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g---~~V~~~~ 33 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAG---HQLHVTT 33 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTT---CEEEECC
T ss_pred CEEEEEccCHHHHHHHHHHHhCC---CEEEEEc
Confidence 69999999999999999998764 6776665
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=86.05 E-value=1.6 Score=43.72 Aligned_cols=36 Identities=17% Similarity=0.399 Sum_probs=29.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhH
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQ 108 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~ 108 (416)
..+|+|.|+|.||+.+++.|.+.. .+|+ +.|. +++.
T Consensus 173 GktV~V~G~G~VG~~~A~~L~~~G---akVv-v~D~-~~~~ 208 (364)
T 1leh_A 173 GLAVSVQGLGNVAKALCKKLNTEG---AKLV-VTDV-NKAA 208 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEE-EECS-CHHH
T ss_pred cCEEEEECchHHHHHHHHHHHHCC---CEEE-EEcC-CHHH
Confidence 358999999999999999999875 6887 6665 4443
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=85.82 E-value=0.5 Score=44.95 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=26.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
++||||.|+|.+|+.+.+.|.+.. .+|++.|-
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G---~~V~~~dr 46 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWP---GGVTVYDI 46 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTST---TCEEEECS
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC---CeEEEEeC
Confidence 569999999999999999988764 67777753
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=85.65 E-value=0.68 Score=43.38 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=25.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
++||+|.|+|.+|+.+++.|.... .+|+.++
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g---~~V~~~~ 34 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEG---VTVYAFD 34 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTT---CEEEEEC
T ss_pred CCEEEEECccHHHHHHHHHHHHCC---CeEEEEe
Confidence 469999999999999999998764 6776665
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=85.46 E-value=0.91 Score=46.95 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=26.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.||||.|.|.+|..++..+.... ++|+.++-
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG---~~V~l~D~ 85 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAG---IETFLVVR 85 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CeEEEEEC
Confidence 58999999999999999988764 78777753
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=85.30 E-value=2.8 Score=38.28 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=25.5
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
||.|.| .|.||+.+++.|.++. +..+|+++..
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~-~g~~V~~~~r 34 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLLKKV-PASQIIAIVR 34 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHTTTS-CGGGEEEEES
T ss_pred eEEEEcCCchHHHHHHHHHHHhC-CCCeEEEEEc
Confidence 789999 8999999999998861 1268877754
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=84.90 E-value=4.5 Score=37.60 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=26.9
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.++|.|-| .|.||+.+++.|.++. .+|+++..
T Consensus 11 ~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r 43 (342)
T 1y1p_A 11 GSLVLVTGANGFVASHVVEQLLEHG---YKVRGTAR 43 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 36899999 7999999999999875 68877754
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=84.78 E-value=0.77 Score=42.22 Aligned_cols=30 Identities=17% Similarity=0.405 Sum_probs=24.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
+||+|.|+|.+|+.+++.|.... .+|...+
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g---~~v~~~~ 33 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTP---HELIISG 33 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSS---CEEEEEC
T ss_pred cEEEEECCCHHHHHHHHHHHhCC---CeEEEEC
Confidence 69999999999999999987653 4554444
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=84.77 E-value=0.8 Score=44.09 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=29.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhh
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASH 111 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~ 111 (416)
++||||.|+|.+|+.+++.|.... .+|++.|- +++.+..
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G---~~V~~~dr--~~~~~~~ 69 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAG---YALQVWNR--TPARAAS 69 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTT---CEEEEECS--CHHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHhCC---CeEEEEcC--CHHHHHH
Confidence 469999999999999999998864 68777753 3444433
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=84.63 E-value=0.34 Score=45.78 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=27.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+||+|.|.|.||..+.+.|.+.. .+|++++.
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G---~~V~~~~~ 37 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVG---HYVTVLHA 37 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTT---CEEEECSS
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCC---CEEEEecC
Confidence 469999999999999999998764 78887775
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=84.60 E-value=2.2 Score=43.79 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=29.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..||+|-|||-+|+.+++.|.+.. ..||+|.|.
T Consensus 221 g~~vaVqG~GnVG~~aa~~l~e~G---akVVavsD~ 253 (424)
T 3k92_A 221 NARIIIQGFGNAGSFLAKFMHDAG---AKVIGISDA 253 (424)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHT---CEEEEEECS
T ss_pred cCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECC
Confidence 579999999999999999998865 799999996
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=84.58 E-value=0.87 Score=42.78 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=26.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||+|.|+|.+|+.+++.|.... .+|+..|-
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G---~~V~~~dr 32 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAG---CSVTIWNR 32 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEECS
T ss_pred CEEEEEeecHHHHHHHHHHHHCC---CeEEEEcC
Confidence 58999999999999999998875 68776653
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=84.55 E-value=0.94 Score=41.83 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=27.2
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+.+||||.|+|.+|+.+++.|.... .+|+..+-
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~G---~~V~~~~r 50 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADLG---HEVTIGTR 50 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 3579999999999999999998864 68777763
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=84.44 E-value=0.98 Score=44.10 Aligned_cols=88 Identities=15% Similarity=0.159 Sum_probs=49.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-+|.|.|.|.||..+++.+.... .+|+++... .+.+..+.+ .+|. +.- ++ .++
T Consensus 189 ~~VlV~GaG~vG~~~~q~a~~~G---a~Vi~~~~~--~~~~~~~~~---~lGa---~~v--------~~--------~~~ 241 (366)
T 1yqd_A 189 KHIGIVGLGGLGHVAVKFAKAFG---SKVTVISTS--PSKKEEALK---NFGA---DSF--------LV--------SRD 241 (366)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEEESC--GGGHHHHHH---TSCC---SEE--------EE--------TTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCC--HHHHHHHHH---hcCC---ceE--------Ee--------ccC
Confidence 47999999999999999887764 577776532 222222220 1221 000 10 011
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
++.+.-...++|+||||+|.-...+.+-..++.|.
T Consensus 242 ~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G 276 (366)
T 1yqd_A 242 QEQMQAAAGTLDGIIDTVSAVHPLLPLFGLLKSHG 276 (366)
T ss_dssp HHHHHHTTTCEEEEEECCSSCCCSHHHHHHEEEEE
T ss_pred HHHHHHhhCCCCEEEECCCcHHHHHHHHHHHhcCC
Confidence 10000001279999999997655555666666655
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=84.42 E-value=0.76 Score=43.99 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=30.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhh
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL 113 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Ll 113 (416)
++||||.|+|.+|+.+++.|.... ++|++.|- +++.+..+.
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G---~~V~~~dr--~~~~~~~~~ 49 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQG---KRVAIWNR--SPGKAAALV 49 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTT---CCEEEECS--SHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC---CEEEEEeC--CHHHHHHHH
Confidence 469999999999999999998865 67777753 344444443
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=84.36 E-value=0.7 Score=46.79 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=30.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhh
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHL 112 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~L 112 (416)
.+|.|.|+||+|+.+++.|.+++ .++++|.. +++.+..+
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g---~~vvvId~--d~~~v~~~ 43 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSG---VKMVVLDH--DPDHIETL 43 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT---CCEEEEEC--CHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCC---CCEEEEEC--CHHHHHHH
Confidence 48999999999999999999875 78888864 45544433
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=84.33 E-value=0.91 Score=42.12 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=28.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhh
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASH 111 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~ 111 (416)
|||+|.|+|.+|+.+++.|.... .+|++++. +.+.+..
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g---~~V~~~~~--~~~~~~~ 38 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRG---HYLIGVSR--QQSTCEK 38 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEECS--CHHHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC---CEEEEEEC--CHHHHHH
Confidence 48999999999999999998764 57777743 3444433
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=84.33 E-value=1.7 Score=44.51 Aligned_cols=94 Identities=22% Similarity=0.304 Sum_probs=59.1
Q ss_pred ceeEEEEccChhHHHHHHHHHh-CCCCCceEEEEecCC---------ChhHHhhhhccccccccCCCceeeecCCeEEEC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHG-RKDSPLEVVAINDTG---------GVKQASHLLKYDSTLGIFEADVKPVGTDGISVD 137 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~-~~~~~~~vVaINd~~---------~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~ 137 (416)
..+|+|-|||-+|+.+++.|.+ .. ..||+|.|.. +++.+..+. ..+|++.. ..+
T Consensus 209 g~~vaVqG~GnVG~~~a~~L~e~~G---akvVavsD~~G~i~dp~Gld~~~l~~~~---~~~g~l~~----y~~------ 272 (415)
T 2tmg_A 209 KATVAVQGFGNVGQFAALLISQELG---SKVVAVSDSRGGIYNPEGFDVEELIRYK---KEHGTVVT----YPK------ 272 (415)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---CEEEEEECSSCEEECTTCCCHHHHHHHH---HHSSCSTT----CSS------
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcC---CEEEEEEeCCCeEECCCCCCHHHHHHHH---HhhCCccc----CCC------
Confidence 4789999999999999999988 54 8999999863 444333222 22333221 111
Q ss_pred CEEEEEEeccCCCCCCCCCccccEEEcCC-CCCCCHhhHHHHHHcCCCEEEEc
Q 014890 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 138 G~~I~v~~~~~p~~i~W~~~gvDiVie~T-G~f~s~~~a~~hl~aGAkkVIIs 189 (416)
.+.+ +++++ |. ..+|+++.|+ +..++.+.+... +|| +|+-
T Consensus 273 a~~~------~~~ei-l~-~~~DIliP~A~~n~i~~~~a~~l---~ak-~V~E 313 (415)
T 2tmg_A 273 GERI------TNEEL-LE-LDVDILVPAALEGAIHAGNAERI---KAK-AVVE 313 (415)
T ss_dssp SEEE------CHHHH-TT-CSCSEEEECSSTTSBCHHHHTTC---CCS-EEEC
T ss_pred ceEc------Cchhh-hc-CCCcEEEecCCcCccCcccHHHc---CCe-EEEe
Confidence 1211 12222 53 5899999995 667788777654 664 4453
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=84.21 E-value=0.9 Score=43.48 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=27.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
++||||.|+|.+|+.+++.|.+.. .+|+..|-
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~G---~~V~~~dr 52 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNG---FKVTVWNR 52 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTT---CEEEEECS
T ss_pred CCEEEEECccHHHHHHHHHHHHCC---CeEEEEeC
Confidence 369999999999999999998875 68777764
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=84.21 E-value=1.2 Score=46.45 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=28.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|||.|+|+||+.+++.+.... ++|++.+..
T Consensus 142 g~~vgIIG~G~IG~~vA~~l~~~G---~~V~~~d~~ 174 (529)
T 1ygy_A 142 GKTVGVVGLGRIGQLVAQRIAAFG---AYVVAYDPY 174 (529)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTT---CEEEEECTT
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCC---CEEEEECCC
Confidence 468999999999999999998764 788888653
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=84.18 E-value=1.3 Score=45.21 Aligned_cols=90 Identities=17% Similarity=0.075 Sum_probs=48.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
.||.|.|.|.||+.+++.|.+.+ .+|+.++. +.+.+..+.+ .++. +. .+.+ ...+
T Consensus 4 k~VlViGaG~iG~~ia~~L~~~G---~~V~v~~R--~~~~a~~la~---~~~~----~~------------~~~~-Dv~d 58 (450)
T 1ff9_A 4 KSVLMLGSGFVTRPTLDVLTDSG---IKVTVACR--TLESAKKLSA---GVQH----ST------------PISL-DVND 58 (450)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTT---CEEEEEES--SHHHHHHTTT---TCTT----EE------------EEEC-CTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhCc---CEEEEEEC--CHHHHHHHHH---hcCC----ce------------EEEe-ecCC
Confidence 58999999999999999998754 67666653 2333322221 0110 00 0000 0111
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
++++.-.-.++|+||.|+|.+...+.+...+++|.
T Consensus 59 ~~~l~~~l~~~DvVIn~a~~~~~~~i~~a~l~~g~ 93 (450)
T 1ff9_A 59 DAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKK 93 (450)
T ss_dssp HHHHHHHHTTSSEEEECCC--CHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCcEEEECCccccchHHHHHHHhCCC
Confidence 11110001278999999998766555556667765
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=84.01 E-value=0.96 Score=42.09 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=25.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
+||+|.|+|.||+.+++.|..... ..+|++++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~-~~~V~~~d 33 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYD 33 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC-CSEEEEEC
T ss_pred cEEEEEecCHHHHHHHHHHHhcCC-CcEEEEEe
Confidence 489999999999999999987641 13776665
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=83.97 E-value=2.7 Score=40.29 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=47.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||+|.|.|.+|..+...|.+.. .+|..+. ..+.+..+-+. |. .++ ..+..+.. .+.. ..
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G---~~V~l~~---~~~~~~~i~~~----g~---~~~-~~~~~~~~---~~~~--~~ 79 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAG---HEVILIA---RPQHVQAIEAT----GL---RLE-TQSFDEQV---KVSA--SS 79 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTT---CEEEEEC---CHHHHHHHHHH----CE---EEE-CSSCEEEE---CCEE--ES
T ss_pred CCcEEEECcCHHHHHHHHHHHHCC---CeEEEEE---cHhHHHHHHhC----Ce---EEE-cCCCcEEE---eeee--eC
Confidence 579999999999999999888764 5766662 34444333321 10 111 11222211 1222 23
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHh
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDRE 173 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~ 173 (416)
+++.+ .+.|+||.|+...-.++
T Consensus 80 ~~~~~----~~~D~vilavk~~~~~~ 101 (318)
T 3hwr_A 80 DPSAV----QGADLVLFCVKSTDTQS 101 (318)
T ss_dssp CGGGG----TTCSEEEECCCGGGHHH
T ss_pred CHHHc----CCCCEEEEEcccccHHH
Confidence 34333 36899999998874433
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.74 E-value=1.1 Score=46.18 Aligned_cols=95 Identities=17% Similarity=0.113 Sum_probs=54.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+.||.|.|.|.+||.+++.|.+.. ..+|+.+|. +.+.+..|.+. .+ ++ .+.+ ...
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~~~--g~~V~v~~R--~~~ka~~la~~---~~-----~~------------~~~~-D~~ 77 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAAND--DINVTVACR--TLANAQALAKP---SG-----SK------------AISL-DVT 77 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTST--TEEEEEEES--SHHHHHHHHGG---GT-----CE------------EEEC-CTT
T ss_pred CCEEEEECChHHHHHHHHHHHhCC--CCeEEEEEC--CHHHHHHHHHh---cC-----Cc------------EEEE-ecC
Confidence 358999999999999999998763 278777764 23333333211 11 11 0010 001
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
+++++.-.-.++|+||.|+|.+....-+...+++|+ .+++
T Consensus 78 d~~~l~~~l~~~DvVIn~tp~~~~~~v~~a~l~~g~--~vvd 117 (467)
T 2axq_A 78 DDSALDKVLADNDVVISLIPYTFHPNVVKSAIRTKT--DVVT 117 (467)
T ss_dssp CHHHHHHHHHTSSEEEECSCGGGHHHHHHHHHHHTC--EEEE
T ss_pred CHHHHHHHHcCCCEEEECCchhhhHHHHHHHHhcCC--EEEE
Confidence 111110001268999999998865555556677776 4444
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=83.74 E-value=2.1 Score=43.89 Aligned_cols=89 Identities=17% Similarity=0.283 Sum_probs=56.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCC---------ChhHHhhhhccccccccCCCceeeecCCeEEECC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG---------GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG 138 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~---------~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G 138 (416)
..+|+|-|||-+|+.+++.|.+.. ..||+|.|.. +++.+..+. ..+|+. + +
T Consensus 218 gk~vaVqG~GnVG~~~a~~L~~~G---akVVavsD~~G~i~dp~Gld~~~l~~~~---~~~g~v----~----------~ 277 (419)
T 3aoe_E 218 GARVVVQGLGQVGAAVALHAERLG---MRVVAVATSMGGMYAPEGLDVAEVLSAY---EATGSL----P----------R 277 (419)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEEEEEETTEEEECTTCCCHHHHHHHH---HHHSSC----S----------C
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEEEcCCCeEECCCCCCHHHHHHHH---HhhCCc----c----------e
Confidence 468999999999999999998875 7999999862 344333322 112221 1 0
Q ss_pred EEEEEEeccCCCCCCCCCccccEEEcCC-CCCCCHhhHHHHHHcCCCEEEE
Q 014890 139 KVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 139 ~~I~v~~~~~p~~i~W~~~gvDiVie~T-G~f~s~~~a~~hl~aGAkkVII 188 (416)
- . -+++++ |. ..+|+.+.|+ +..++.+.|... +|| +|+
T Consensus 278 ~--~----~~~~e~-~~-~~~DVliP~A~~n~i~~~~A~~l---~ak-~V~ 316 (419)
T 3aoe_E 278 L--D----LAPEEV-FG-LEAEVLVLAAREGALDGDRARQV---QAQ-AVV 316 (419)
T ss_dssp C--C----BCTTTG-GG-SSCSEEEECSCTTCBCHHHHTTC---CCS-EEE
T ss_pred e--e----ccchhh-hc-cCceEEEecccccccccchHhhC---Cce-EEE
Confidence 0 0 122333 64 5899999985 566777776653 664 344
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=83.46 E-value=0.96 Score=44.90 Aligned_cols=41 Identities=22% Similarity=0.397 Sum_probs=31.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhh
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL 113 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Ll 113 (416)
++||||.|+|.+|+.+++.|.+.. .+|++.|- +++.+..+.
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G---~~V~v~dr--~~~~~~~l~ 62 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGG---HECVVYDL--NVNAVQALE 62 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT---CEEEEECS--CHHHHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHhCC---CEEEEEeC--CHHHHHHHH
Confidence 479999999999999999998875 78877764 344444443
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=83.45 E-value=0.55 Score=46.33 Aligned_cols=31 Identities=26% Similarity=0.181 Sum_probs=26.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
-+|.|.|.|.+|+.+++.+.... .+|++++-
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~G---a~V~v~dr 198 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLG---AQVQIFDI 198 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEeC
Confidence 58999999999999999998875 57777764
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=83.44 E-value=5.4 Score=40.86 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=29.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|+|-|||-+|+.+++.|.+.. ..||+|.|.
T Consensus 210 gk~vaVqG~GnVG~~aa~~L~e~G---akVVavsD~ 242 (421)
T 1v9l_A 210 GKTVAIQGMGNVGRWTAYWLEKMG---AKVIAVSDI 242 (421)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTT---CEEEEEECS
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEEECC
Confidence 468999999999999999998875 899999986
|
| >3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* | Back alignment and structure |
|---|
Probab=83.39 E-value=5.9 Score=41.56 Aligned_cols=85 Identities=14% Similarity=0.276 Sum_probs=52.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC---------CChhHHhhhhccccccccCCCceeeecCCeEEECC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT---------GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG 138 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~---------~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G 138 (416)
..+|+|-|||-+|+..++.|.+.. -.||+|.|. .+++.+..+ -..+|+... .. ++
T Consensus 244 g~tVaVQG~GNVG~~aa~~L~e~G---akVVavsDs~G~iyd~~Gid~~~l~~~---k~~~g~i~~----~~------~a 307 (501)
T 3mw9_A 244 DKTFVVQGFGNVGLHSMRYLHRFG---AKCITVGESDGSIWNPDGIDPKELEDF---KLQHGTILG----FP------KA 307 (501)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEEEEECSSCEEECTTCCCHHHHHHH---HHHHSSSTT----CT------TS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCCCHHHHHHH---HHhcCCeec----cc------Cc
Confidence 468999999999999999998875 699999873 134433322 222443221 11 11
Q ss_pred EEEEEEeccCCCCCCCCCccccEEEcC-CCCCCCHhhHHH
Q 014890 139 KVIQVVSNRNPVNLPWGDLGIDLVIEG-TGVFVDREGAGK 177 (416)
Q Consensus 139 ~~I~v~~~~~p~~i~W~~~gvDiVie~-TG~f~s~~~a~~ 177 (416)
+.+ . .+ .| ...+||.+-| ++..++.+.|+.
T Consensus 308 ~~~---~----~~-il-~~~~DIliPcA~~n~I~~~na~~ 338 (501)
T 3mw9_A 308 KIY---E----GS-IL-EVDCDILIPAASEKQLTKSNAPR 338 (501)
T ss_dssp EEE---C----SC-GG-GSCCSEEEECSSSCCBCTTTGGG
T ss_pred eee---c----cc-cc-cccceEEeeccccCccCHhHHHH
Confidence 221 1 12 25 3578999988 566677777754
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=83.21 E-value=1.9 Score=44.22 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=52.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCC--------------ChhHHhhhhccccccccCCCceeeecCCe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG--------------GVKQASHLLKYDSTLGIFEADVKPVGTDG 133 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~--------------~~~~~a~LlkyDS~~G~f~~~v~~~~~~~ 133 (416)
..||+|-|||-+|+.+++.|.+.. ..||+|.|.. +++.+..+. ..+|+... ..
T Consensus 212 g~~vaVqG~GnVG~~~a~~L~~~G---akvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~---~~~g~i~~----~~--- 278 (421)
T 2yfq_A 212 DAKIAVQGFGNVGTFTVKNIERQG---GKVCAIAEWDRNEGNYALYNENGIDFKELLAYK---EANKTLIG----FP--- 278 (421)
T ss_dssp GSCEEEECCSHHHHHHHHHHHHTT---CCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHH---HHHCC------------
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEEEecCCCccceEEECCCCCCHHHHHHHH---HhcCCccc----CC---
Confidence 468999999999999999999875 7999999974 233332222 11332110 11
Q ss_pred EEECCEEEEEEeccCCCCCCCCCccccEEEcCC-CCCCCHhhHHHHHHcCCCEEEEcC
Q 014890 134 ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLITA 190 (416)
Q Consensus 134 i~v~G~~I~v~~~~~p~~i~W~~~gvDiVie~T-G~f~s~~~a~~hl~aGAkkVIIsa 190 (416)
+.+.+ +++++ |. ..+|+.+.|+ +..++.+.|..+ +|| +|+.+
T Consensus 279 ---~a~~i------~~~~~-~~-~~~DIliP~A~~n~i~~~~A~~l---~ak-~VvEg 321 (421)
T 2yfq_A 279 ---GAERI------TDEEF-WT-KEYDIIVPAALENVITGERAKTI---NAK-LVCEA 321 (421)
T ss_dssp ---------------------------CEEECSCSSCSCHHHHTTC---CCS-EEECC
T ss_pred ---CceEe------Cccch-hc-CCccEEEEcCCcCcCCcccHHHc---CCe-EEEeC
Confidence 11111 12333 64 5899999985 667788888765 664 45543
|
| >4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E | Back alignment and structure |
|---|
Probab=83.19 E-value=1.7 Score=45.06 Aligned_cols=100 Identities=18% Similarity=0.253 Sum_probs=64.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC---------CChhHHhhhhcc-ccccccCCCceeeecCCeEEEC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT---------GGVKQASHLLKY-DSTLGIFEADVKPVGTDGISVD 137 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~---------~~~~~~a~Llky-DS~~G~f~~~v~~~~~~~i~v~ 137 (416)
..||+|=|||-+|..+++.|.+.. -.||++.|. .+++.+..|++. .+..|+...-.+ + .+
T Consensus 235 Gk~vaVQG~GnVG~~aa~~L~e~G---akvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~--~-----~g 304 (450)
T 4fcc_A 235 GMRVSVSGSGNVAQYAIEKAMEFG---ARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAK--E-----FG 304 (450)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHH--H-----HT
T ss_pred CCEEEEeCCChHHHHHHHHHHhcC---CeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccc--c-----CC
Confidence 468999999999999999999875 689998863 245566665532 122222111000 0 01
Q ss_pred CEEEEEEeccCCCCCCCCCccccEEEcC-CCCCCCHhhHHHHHHcCCCE
Q 014890 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEG-TGVFVDREGAGKHIQAGAKK 185 (416)
Q Consensus 138 G~~I~v~~~~~p~~i~W~~~gvDiVie~-TG~f~s~~~a~~hl~aGAkk 185 (416)
.+ ... +++ .|. ..+||.+=| ++..++.+.++.-.+.|+|-
T Consensus 305 ~~---~~~---~~~-i~~-~~~DI~iPcAl~~~I~~~~a~~L~a~g~k~ 345 (450)
T 4fcc_A 305 LV---YLE---GQQ-PWS-VPVDIALPCATQNELDVDAAHQLIANGVKA 345 (450)
T ss_dssp CE---EEE---TCC-GGG-SCCSEEEECSCTTCBCHHHHHHHHHTTCCE
T ss_pred cE---Eec---Ccc-ccc-CCccEEeeccccccccHHHHHHHHhcCceE
Confidence 11 111 222 264 589999988 78888999998877778854
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=83.18 E-value=3.2 Score=40.44 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=25.4
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
|++||+|.|.|.+|..++..+..... ++ |.+-|.
T Consensus 13 ~~~kI~ViGaG~vG~~iA~~la~~g~--~~-V~L~Di 46 (328)
T 2hjr_A 13 MRKKISIIGAGQIGSTIALLLGQKDL--GD-VYMFDI 46 (328)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC--CE-EEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC--Ce-EEEEEC
Confidence 55799999999999999888877641 26 444443
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=83.11 E-value=1.2 Score=39.35 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=26.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||+|.| .|.+|+.+++.|.+.. .+|+.++.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g---~~V~~~~r 32 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLG---HEIVVGSR 32 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT---CEEEEEES
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 4899999 9999999999998764 68877764
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=83.05 E-value=0.87 Score=42.23 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=25.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||+|.|+|.+|+.+++.|.. . .+|+.++.
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g---~~V~~~~~ 31 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-R---FPTLVWNR 31 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-T---SCEEEECS
T ss_pred CeEEEEcccHHHHHHHHHHhC-C---CeEEEEeC
Confidence 589999999999999999887 5 67766653
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.05 E-value=1.1 Score=43.20 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=27.7
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|++||||.|+|.+|..+++.|.+.. ..+|++.|-
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~~~G--~~~V~~~dr 56 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLGGRN--AARLAAYDL 56 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTT--CSEEEEECG
T ss_pred cCCeEEEECccHHHHHHHHHHHHcC--CCeEEEEeC
Confidence 6689999999999999999998753 157776764
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=82.72 E-value=1.2 Score=40.23 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=24.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
++||+|.|.|.+|..+++.|.... .+|..++
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g---~~V~~~~ 49 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAG---HEVTYYG 49 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT---CEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEc
Confidence 469999999999999999998764 5765543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=82.68 E-value=1.1 Score=45.91 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=30.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhh
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHL 112 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~L 112 (416)
.|||-|.|+|++|+.+++.|.+++ .+|+.|.. +++.+..|
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~---~~v~vId~--d~~~~~~~ 42 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGEN---NDITIVDK--DGDRLREL 42 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTT---EEEEEEES--CHHHHHHH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCC---CCEEEEEC--CHHHHHHH
Confidence 479999999999999999987664 68888864 44444443
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=82.57 E-value=1.2 Score=42.48 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=26.1
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|+.||+|.| +|.||..+++.|.... .+|..++
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G---~~V~~~~ 52 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASG---YPISILD 52 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTT---CCEEEEC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCC---CeEEEEE
Confidence 556999999 9999999999998764 5666664
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=82.26 E-value=0.99 Score=42.17 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=25.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||+|.|+|.+|+.+++.|.... .+|..++-
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g---~~V~~~~~ 31 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHG---YPLIIYDV 31 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTT---CCEEEECS
T ss_pred CeEEEEeccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 48999999999999999998764 57766653
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.21 E-value=1.2 Score=42.27 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=26.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
++||+|.|+|.+|+.+++.|.... .+|..++.
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g---~~V~~~~~ 61 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMG---HTVTVWNR 61 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTT---CCEEEECS
T ss_pred CCeEEEEcccHHHHHHHHHHHhCC---CEEEEEeC
Confidence 369999999999999999998764 57766653
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=82.16 E-value=1.1 Score=46.81 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=27.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|+|.|+|+||+.+++.+.... ++|++.+-
T Consensus 277 GktVgIIG~G~IG~~vA~~l~~~G---~~V~v~d~ 308 (494)
T 3d64_A 277 GKIAVVAGYGDVGKGCAQSLRGLG---ATVWVTEI 308 (494)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTT---CEEEEECS
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 468999999999999999998765 78877763
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=82.07 E-value=1.1 Score=45.70 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=30.6
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhh
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHL 112 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~L 112 (416)
|+|||+|.|.|.+|..++.++.+.. .+|++++- +.+.+..|
T Consensus 1 M~mkI~VIG~G~vG~~lA~~La~~G---~~V~~~D~--~~~~v~~l 41 (450)
T 3gg2_A 1 MSLDIAVVGIGYVGLVSATCFAELG---ANVRCIDT--DRNKIEQL 41 (450)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT---CEEEEECS--CHHHHHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhcC---CEEEEEEC--CHHHHHHH
Confidence 5579999999999999999998875 68877753 34444333
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=81.91 E-value=1 Score=43.35 Aligned_cols=152 Identities=18% Similarity=0.115 Sum_probs=75.4
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCce-eeecCCeEEECCEEEEEE
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV-KPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v-~~~~~~~i~v~G~~I~v~ 144 (416)
.|.-|||+.|+|.+|..+++.|.+.. ++|++.|-. ++.+..|.+.- .+...++ +..++..+ -+.
T Consensus 3 ~Ms~kIgfIGLG~MG~~mA~~L~~~G---~~V~v~dr~--~~~~~~l~~~G---~~~~~s~~e~~~~~dv-------vi~ 67 (297)
T 4gbj_A 3 AMSEKIAFLGLGNLGTPIAEILLEAG---YELVVWNRT--ASKAEPLTKLG---ATVVENAIDAITPGGI-------VFS 67 (297)
T ss_dssp -CCCEEEEECCSTTHHHHHHHHHHTT---CEEEEC---------CTTTTTT---CEECSSGGGGCCTTCE-------EEE
T ss_pred CCCCcEEEEecHHHHHHHHHHHHHCC---CeEEEEeCC--HHHHHHHHHcC---CeEeCCHHHHHhcCCc-------eee
Confidence 36669999999999999999999875 788777642 22222222210 0111111 10111111 122
Q ss_pred eccCCCC---CCCC-----CccccEEEcCCCCCC--CHhhHHHHHHcCCCEEEEcCCCCC-------CCCeEEeecCccC
Q 014890 145 SNRNPVN---LPWG-----DLGIDLVIEGTGVFV--DREGAGKHIQAGAKKVLITAPGKG-------DIPTYVVGVNADA 207 (416)
Q Consensus 145 ~~~~p~~---i~W~-----~~gvDiVie~TG~f~--s~~~a~~hl~aGAkkVIIsapskd-------~~ptvV~gVN~~~ 207 (416)
...++.. +-.. ...-+++||++-..- +++.+..+.+.|+ -.+++|-.. ...+++.|-+.+.
T Consensus 68 ~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~--~~ldapVsGg~~~a~~g~l~im~gG~~~~ 145 (297)
T 4gbj_A 68 VLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGA--HYVGAPIFARPEAVRAKVGNICLSGNAGA 145 (297)
T ss_dssp CCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTC--EEEECCEECCHHHHHHTCCEEEEEECHHH
T ss_pred eccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCC--ceecCCcCCCccccccccceeecccchhH
Confidence 2222211 0000 011247888765443 3345556667888 678888421 2447778887765
Q ss_pred CCCC--------CCeEecCCcchhhhHHHHHHHHHHh
Q 014890 208 YKPD--------EPIISNASCTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 208 y~~~--------~~IISnaSCTTn~Lap~lkvL~~~f 236 (416)
++.- .+|+-.. .....+-.+|.+++.+
T Consensus 146 ~~~~~~~l~~~g~~i~~~g--~~~G~g~~~Kl~~N~~ 180 (297)
T 4gbj_A 146 KERIKPIVENFVKGVFDFG--DDPGAANVIKLAGNFM 180 (297)
T ss_dssp HHHHHHHHHTTCSEEEECC--SCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCeEEec--CCccHHHHHHHHHHHH
Confidence 5421 1222111 0124566777777665
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=81.75 E-value=1.3 Score=42.33 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=25.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
++||+|.|.|.+|..+.+.|.... .+|..++
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g---~~V~~~~ 34 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKG---QSVLAWD 34 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT---CEEEEEC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCC---CEEEEEe
Confidence 469999999999999999888764 6777665
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=81.54 E-value=1.5 Score=38.61 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=26.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g---~~V~~~~R 32 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG---HEVLAVVR 32 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC---CEEEEEEe
Confidence 4799999 7999999999999875 68887764
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=81.36 E-value=1.3 Score=42.51 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=27.4
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.|++||+|.|.|.+|..+.+.|.+.. .+|..++.
T Consensus 12 ~~~~kI~iIG~G~mG~ala~~L~~~G---~~V~~~~r 45 (335)
T 1z82_A 12 HMEMRFFVLGAGSWGTVFAQMLHENG---EEVILWAR 45 (335)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTT---CEEEEECS
T ss_pred ccCCcEEEECcCHHHHHHHHHHHhCC---CeEEEEeC
Confidence 47889999999999999999998764 57776764
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=81.27 E-value=1.2 Score=44.05 Aligned_cols=40 Identities=30% Similarity=0.359 Sum_probs=30.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhh
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHL 112 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~L 112 (416)
..||+|.|+|.||..+++.|.... .+|++.+- +++.+..+
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G---~~V~~~dr--~~~~~~~a 47 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAAN---HSVFGYNR--SRSGAKSA 47 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTT---CCEEEECS--CHHHHHHH
T ss_pred CCEEEEEeecHHHHHHHHHHHHCC---CEEEEEeC--CHHHHHHH
Confidence 458999999999999999998764 68777763 44444443
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=80.62 E-value=0.97 Score=42.45 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=26.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||+|.|+|.+|+.+.+.|.+.. .+|...|-
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G---~~V~~~dr 32 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAG---FDVTVWNR 32 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHT---CCEEEECS
T ss_pred CeEEEEccCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 58999999999999999998764 67776753
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=80.50 E-value=4.7 Score=38.70 Aligned_cols=29 Identities=28% Similarity=0.317 Sum_probs=23.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc--eEEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL--EVVAI 100 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~--~vVaI 100 (416)
+||+|.|.|.+|..++..+.... + +|+.+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g---~~~eV~L~ 31 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRG---SCSELVLV 31 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CCSEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CCCEEEEE
Confidence 48999999999999998887764 4 66555
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=80.41 E-value=1.1 Score=46.63 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=27.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|+|.|+|+||+.+++.+.... ++|++.+-
T Consensus 257 GktVgIIG~G~IG~~vA~~l~~~G---~~Viv~d~ 288 (479)
T 1v8b_A 257 GKIVVICGYGDVGKGCASSMKGLG---ARVYITEI 288 (479)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHT---CEEEEECS
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCc---CEEEEEeC
Confidence 468999999999999999998764 78877764
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=80.21 E-value=2.6 Score=37.48 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=25.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCc--eEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPL--EVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~--~vVaINd 102 (416)
++|.|-| .|.||+.+++.|.++. . +|+++..
T Consensus 19 ~~vlVtGasg~iG~~l~~~L~~~G---~~~~V~~~~r 52 (242)
T 2bka_A 19 KSVFILGASGETGRVLLKEILEQG---LFSKVTLIGR 52 (242)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHT---CCSEEEEEES
T ss_pred CeEEEECCCcHHHHHHHHHHHcCC---CCCEEEEEEc
Confidence 5899999 8999999999999875 4 7777653
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=80.68 E-value=0.38 Score=43.72 Aligned_cols=32 Identities=22% Similarity=0.088 Sum_probs=25.1
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
+.+||+|.|+|.||+.+++.|.+.. .+|..++
T Consensus 18 ~~~~I~iIG~G~mG~~la~~L~~~G---~~V~~~~ 49 (201)
T 2yjz_A 18 KQGVVCIFGTGDFGKSLGLKMLQCG---YSVVFGS 49 (201)
Confidence 4568999999999999999887653 4655554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 416 | ||||
| d1rm4a2 | 163 | d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate de | 5e-75 | |
| d3cmco2 | 163 | d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate de | 1e-73 | |
| d1u8fo2 | 164 | d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate de | 4e-69 | |
| d1rm4a1 | 172 | c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosp | 2e-66 | |
| d1obfo2 | 162 | d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate de | 5e-65 | |
| d1hdgo1 | 169 | c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosp | 1e-61 | |
| d2g82a2 | 162 | d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate de | 5e-61 | |
| d1gado1 | 166 | c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosp | 6e-58 | |
| d1u8fo1 | 169 | c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosp | 6e-58 | |
| d1k3ta2 | 169 | d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate de | 2e-55 | |
| d1dssg1 | 169 | c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosp | 2e-55 | |
| d1k3ta1 | 190 | c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosp | 7e-53 | |
| d3cmco1 | 171 | c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosp | 4e-50 | |
| d2g82a1 | 168 | c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosp | 1e-47 | |
| d2b4ro1 | 166 | c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosp | 1e-47 | |
| d1cf2o1 | 171 | c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosp | 6e-45 | |
| d1obfo1 | 173 | c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosp | 3e-43 | |
| d2czca2 | 172 | c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosp | 3e-41 | |
| d1b7go1 | 178 | c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosp | 3e-38 | |
| d1b7go2 | 162 | d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate de | 4e-33 | |
| d1cf2o2 | 165 | d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate de | 2e-31 | |
| d1ydwa1 | 184 | c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductas | 0.004 |
| >d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 229 bits (584), Expect = 5e-75
Identities = 157/176 (89%), Positives = 161/176 (91%), Gaps = 13/176 (7%)
Query: 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRA 279
CTTNCLAPFVKVLDQKF GIIKGTMTTTHSYTGDQRLLDASHRDLRRA
Sbjct: 1 CTTNCLAPFVKVLDQKF-------------GIIKGTMTTTHSYTGDQRLLDASHRDLRRA 47
Query: 280 RAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVN 339
RAA LNIVPTSTGAAKAVALVLP LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVN
Sbjct: 48 RAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVN 107
Query: 340 AAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYD 395
AAFRESADNELKGILSVCDEPLVS+DFRC+DVSST+DSSLT+VMGDDMVKVIAWYD
Sbjct: 108 AAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYD 163
|
| >d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Score = 225 bits (575), Expect = 1e-73
Identities = 109/176 (61%), Positives = 135/176 (76%), Gaps = 13/176 (7%)
Query: 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRA 279
CTTNCLAPF KVL ++F GI++G MTT HSYT DQR+LD H+DLRRA
Sbjct: 1 CTTNCLAPFAKVLHEQF-------------GIVRGMMTTVHSYTNDQRILDLPHKDLRRA 47
Query: 280 RAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVN 339
RAAA +I+PT+TGAAKAVALVLP LKGKLNG+A+RVPTPNVSVVDLV ++ K+ EEVN
Sbjct: 48 RAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVN 107
Query: 340 AAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYD 395
AA + +A+ ELKGIL+ +EPLVS D+ S VSST+D+ T+V+ MVKV++WYD
Sbjct: 108 AALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYD 163
|
| >d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Score = 213 bits (545), Expect = 4e-69
Identities = 76/177 (42%), Positives = 102/177 (57%), Gaps = 14/177 (7%)
Query: 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDL-RR 278
CTTNCLAP KV+ F GI++G MTT H+ T Q+ +D L R
Sbjct: 1 CTTNCLAPLAKVIHDNF-------------GIVEGLMTTVHAITATQKTVDGPSGKLWRD 47
Query: 279 ARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEV 338
R A NI+P STGAAKAV V+P L GKL G+A RVPT NVSVVDL ++ K +++
Sbjct: 48 GRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDI 107
Query: 339 NAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYD 395
+++++ LKGIL + +VS DF SST D+ + + D VK+I+WYD
Sbjct: 108 KKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYD 164
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 207 bits (527), Expect = 2e-66
Identities = 129/171 (75%), Positives = 143/171 (83%), Gaps = 3/171 (1%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
LKVAINGFGRIGRNFLRCWHGRKDSPL+VV INDTGGVKQASHLLKYDS LG F+ADVK
Sbjct: 1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKT 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
G ISVDGKVI+VVS+RNPVNLPWGD+GIDLVIEGTGVFVDR+GAGKH+QAGAKKVLI
Sbjct: 61 AGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI 120
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCT---TNCLAPFVKVLDQKF 236
TAPGKGDIPTYVVGVN + Y + IISNAS + + ++ K+
Sbjct: 121 TAPGKGDIPTYVVGVNEEGYTHADTIISNASNEWGYSQRVVDLADIVANKW 171
|
| >d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Score = 203 bits (517), Expect = 5e-65
Identities = 93/176 (52%), Positives = 113/176 (64%), Gaps = 14/176 (7%)
Query: 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRR 278
SCTTNCLAP VK L+ K G+ G MTT H+YT +Q L D H DLRR
Sbjct: 1 SCTTNCLAPLVKPLNDKL-------------GLQDGLMTTVHAYTNNQVLTDVYHEDLRR 47
Query: 279 ARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEV 338
AR+A ++++PT TGAA AV VLP L GKLNG A+RVPT NVS+VDL + T EEV
Sbjct: 48 ARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEV 107
Query: 339 NAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWY 394
N + +++ ELKGIL EPLVSVD+ SSTVD+SLT V G +VKV +WY
Sbjct: 108 NGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVDASLTKVSG-RLVKVSSWY 162
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Score = 195 bits (496), Expect = 1e-61
Identities = 83/164 (50%), Positives = 102/164 (62%), Gaps = 1/164 (0%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
+VAINGFGRIGR R + RK+ +EVVAIND K +HLLKYDS F V+
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVE-Y 60
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
+ + VDGK I+V + +P LPW DLG+D VIE TGVF +RE A H+QAGAKKV+IT
Sbjct: 61 TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT 120
Query: 190 APGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLD 233
AP KG+ T V+G N D KP+ IIS AS V L+
Sbjct: 121 APAKGEDITVVIGCNEDQLKPEHTIISCASNEYGYSNRVVDTLE 164
|
| >d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Score = 193 bits (491), Expect = 5e-61
Identities = 93/176 (52%), Positives = 120/176 (68%), Gaps = 14/176 (7%)
Query: 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRA 279
CTTN LAP +KVL++ F G+ K MTT HSYT DQRLLD H+DLRRA
Sbjct: 1 CTTNSLAPVMKVLEEAF-------------GVEKALMTTVHSYTNDQRLLDLPHKDLRRA 47
Query: 280 RAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVN 339
RAAA+NI+PT+TGAAKA ALVLP+LKG+ +G+ALRVPT S+ D+ + ++ AEEVN
Sbjct: 48 RAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVN 107
Query: 340 AAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYD 395
AA + +A+ LKGIL+ ++ +V D SS VD+ LT +G +MVKV AWYD
Sbjct: 108 AALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYD 162
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Score = 185 bits (470), Expect = 6e-58
Identities = 73/164 (44%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND +++LKYDST G F+ V+
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV++
Sbjct: 59 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVL 232
T P K + P +V G N D Y + I+SNAS T + ++
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQD-IVSNASNETGYSNKVLDLI 161
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Score = 185 bits (471), Expect = 6e-58
Identities = 64/166 (38%), Positives = 90/166 (54%), Gaps = 5/166 (3%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADV 126
K+KV +NGFGRIGR R +++VAIND + ++ +YDST G F V
Sbjct: 1 KVKVGVNGFGRIGRLVTRAAFNSGK--VDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV 58
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
K + ++G I + R+P + WGD G + V+E TGVF E AG H+Q GAK+V
Sbjct: 59 K-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRV 117
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVL 232
+I+AP P +V+GVN + Y IISNAS V ++
Sbjct: 118 IISAPSADA-PMFVMGVNHEKYDNSLKIISNASNEFGYSNRVVDLM 162
|
| >d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Score = 178 bits (453), Expect = 2e-55
Identities = 80/181 (44%), Positives = 109/181 (60%), Gaps = 17/181 (9%)
Query: 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLL-DASHRDLR 277
SCTTNCLAP V VL + G+ G MTT HSYT Q+ + S +D R
Sbjct: 1 SCTTNCLAPIVHVLV-------KEGF-----GVQTGLMTTIHSYTATQKTVDGVSVKDWR 48
Query: 278 RARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEE 337
RAAA+NI+P++TGAAKAV +V+P+ +GKL G++ RVPTP+VSVVDL ++ T +E
Sbjct: 49 GGRAAAVNIIPSTTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQE 108
Query: 338 VNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMG----DDMVKVIAW 393
++AA + ++ +KGIL DE LVS DF + SS DS TL K+++W
Sbjct: 109 IDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSW 168
Query: 394 Y 394
Y
Sbjct: 169 Y 169
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Score = 178 bits (453), Expect = 2e-55
Identities = 65/168 (38%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR LR + +VVA+ND ++ ++ KYDST G+F+ +VK
Sbjct: 2 KIGINGFGRIGRLVLRAAL---EMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVK- 57
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ VDGK I V + P N+PW G + ++E TGVF E A H + GAKKV+I
Sbjct: 58 AEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII 117
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKF 236
+AP D P +V GVN + Y D ++SNAS + ++
Sbjct: 118 SAPSA-DAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVIDLIKHMQ 164
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Score = 172 bits (438), Expect = 7e-53
Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 12/189 (6%)
Query: 68 KLKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEA 124
+KV INGFGRIGR + C G + ++VVA+ D + ++ ++YD+ G F+
Sbjct: 2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61
Query: 125 DVKPVG-------TDGISVDGKVIQVVS-NRNPVNLPWGDLGIDLVIEGTGVFVDREGAG 176
+V D + V+G I V RNP +LPWG LG++ VIE TG+F + A
Sbjct: 62 EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121
Query: 177 KHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQK 235
H++ GA+KV+I+AP G T V+GVN Y P E ++SNA V ++
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNADNEWGYSHRVVDLVRHM 181
Query: 236 FVTQLNDRI 244
+ R+
Sbjct: 182 ASKDRSARL 190
|
| >d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Score = 165 bits (418), Expect = 4e-50
Identities = 77/165 (46%), Positives = 99/165 (60%), Gaps = 4/165 (2%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
KV INGFGRIGRN R D +EVVA+ND +HLLKYDS G + V
Sbjct: 3 KVGINGFGRIGRNVFRAALKNPD--IEVVAVNDLTDANTLAHLLKYDSVHGRLD-AEVSV 59
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
+ + V+GK I V + R+P NL WG++G+D+V+E TG F RE A KH++AGAKKV+I+
Sbjct: 60 NGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIIS 119
Query: 190 APGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLD 233
AP K + T V+GVN D Y P +ISNAS T V +
Sbjct: 120 APAKNEDITIVMGVNQDKYDPKAHHVISNASNETGYSHRVVDLAA 164
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Score = 158 bits (401), Expect = 1e-47
Identities = 77/171 (45%), Positives = 102/171 (59%), Gaps = 8/171 (4%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R H R +EV IND K +HLLKYDS F +V
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAY 57
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ VDGK I+ + ++P +PW + G+ +VIE TGVF D + A H++ GAKKV+I
Sbjct: 58 DDQY-LYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 189 TAPGKGDIPTYVVGVNADAYKPDE-PIISNASCT---TNCLAPFVKVLDQK 235
TAP KG+ T V+GVN +AY P IISNAS N +A V+++ +K
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASNEWGYANRVADLVELVLRK 167
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 158 bits (400), Expect = 1e-47
Identities = 69/168 (41%), Positives = 94/168 (55%), Gaps = 7/168 (4%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR R GRKD +EVVAIND + +LLKYDS G F
Sbjct: 2 KLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHGQFP-CEVT 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ + K + V + ++P +PWG +D+V E TGVF+ +E A H++ GAKKV++
Sbjct: 59 HADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIM 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKF 236
+AP K D P YV+G+N Y + I+SNAS +VLD
Sbjct: 119 SAPPKDDTPIYVMGINHHQYDTKQLIVSNASN---EWGYSNRVLDLAV 163
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Score = 151 bits (383), Expect = 6e-45
Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 17/170 (10%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTL-GIFEADVKP 128
VAING+G +G+ + D ++V+ ++ T +A LK L VK
Sbjct: 3 AVAINGYGTVGKRVADAIAQQDD--MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKL 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
GI V G + D+VI+ T + + + + G K +
Sbjct: 61 FEKAGIEVAG------------TVDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108
Query: 189 TAPGKGDIP-TYVVGVNADAY-KPDEPIISNASCTTNCLAPFVKVLDQKF 236
DI ++ N + D + + + +++ + K+
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVDAVRAILEMEEDKY 158
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Score = 147 bits (371), Expect = 3e-43
Identities = 77/197 (39%), Positives = 103/197 (52%), Gaps = 30/197 (15%)
Query: 69 LKVAINGFGRIGRNFLRCWHGR-KDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
++VAING+GRIGRN LR + K +E+VAIND G K +HL +YD+ G F V
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVS 61
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
V + V+G I+V +NRNP LPWG L +D+V+E TG F +E AG HI+ GAKKV+
Sbjct: 62 -VNGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVI 120
Query: 188 ITAPGKGD-IPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
I+APG D T V GVN K + +ISNA ++
Sbjct: 121 ISAPGGADVDATVVYGVNHGTLKSTDTVISNAD--------------NEW---------- 156
Query: 247 MCAGIIKGTMTTTHSYT 263
G + TT +
Sbjct: 157 ---GFSNRMLDTTVALM 170
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 141 bits (357), Expect = 3e-41
Identities = 26/172 (15%), Positives = 58/172 (33%), Gaps = 17/172 (9%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLG-IFEADV 126
K+KV +NG+G IG+ + D +E++ I T +A + + E +
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDD--MELIGITKTKPDFEAYRAKELGIPVYAASEEFI 59
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+G V L +D++++ T + + + +AG K +
Sbjct: 60 PRFEKEGFEVA------------GTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAI 107
Query: 187 LITAPGKGDI-PTYVVGVN-ADAYKPDEPIISNASCTTNCLAPFVKVLDQKF 236
++V N A + + + + ++ D+
Sbjct: 108 FQGGEKADVAEVSFVAQANYEAALGKNYVRVVVIPENIDAIRAMFELADKWD 159
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 134 bits (338), Expect = 3e-38
Identities = 28/195 (14%), Positives = 68/195 (34%), Gaps = 28/195 (14%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
VA+NG+G IG+ + D +++V + T +A + + + + +K
Sbjct: 3 NVAVNGYGTIGKRVADAIIKQPD--MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKF 60
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
GI V + D+V++ T V + ++Q + +
Sbjct: 61 EESGIPVA------------GTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQ 107
Query: 190 APGKGDI--PTYVVGVNADAYKPDE--PIISNASCTTNCLAPFVKVLD----QKFVTQLN 241
K ++ ++ N + + ++S + + + + + N
Sbjct: 108 GGEKAEVADISFSALCNYNEALGKKYIRVVSESIVVPENIDAIRASMKLMSAEDSMRITN 167
Query: 242 DRIFPMCAGIIKGTM 256
+ + GI+KG +
Sbjct: 168 ESL-----GILKGYL 177
|
| >d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 119 bits (301), Expect = 4e-33
Identities = 23/187 (12%), Positives = 56/187 (29%), Gaps = 29/187 (15%)
Query: 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRA 279
C T L + +++ + K T + ++++
Sbjct: 1 CNTTALLRTICTVNKVS-------------KVEKVRATIVRRAADQK--------EVKKG 39
Query: 280 RAAALNIVPTSTGAA--KAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEE 337
+L P + + K V V+ L + +A+ PT + + + + + K ++
Sbjct: 40 PINSLVPDPATVPSHHAKDVNSVIRNLD--IATMAVIAPTTLMHMHFINITLKDKVEKKD 97
Query: 338 VNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE 397
+ + + L + V+ D ++ D + V D+E
Sbjct: 98 ILSVLENTPRIVLISSKYDAEATAELVEVARDLKRDRNDIPEVMIFS-DSIYVK---DDE 153
Query: 398 WGYSQRV 404
V
Sbjct: 154 VMLMYAV 160
|
| >d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Score = 115 bits (289), Expect = 2e-31
Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 34/181 (18%)
Query: 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRR 278
SC T L +K L F GI K +
Sbjct: 1 SCNTTGLCRTLKPLHDSF-------------GIKKVRAVIVRRGADPAQ----------V 37
Query: 279 ARAAALNIVPTSTGAAKAVA-LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEE 337
++ I+P V L ++ +A+ VPT + +++V+V + ++
Sbjct: 38 SKGPINAIIPNPPKLPSHHGPDVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDD 97
Query: 338 VNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE 397
+ F ++ L ++ L S + + +D+ ++ W ++
Sbjct: 98 IIDVFEDTPRVILIS----AEDGLTST---AEIMEYAKELG---RSRNDLFEIPVWRESI 147
Query: 398 W 398
Sbjct: 148 T 148
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 35.7 bits (81), Expect = 0.004
Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102
++++ + G I R R H + + +
Sbjct: 1 QIRIGVMGCADIARKVSRAIHLAPN--ATISGVAS 33
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 416 | |||
| d3cmco2 | 163 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d1rm4a2 | 163 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d1u8fo2 | 164 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d2g82a2 | 162 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d1obfo2 | 162 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d1k3ta2 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d3cmco1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 100.0 | |
| d1cf2o2 | 165 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.94 | |
| d1b7go2 | 162 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.93 | |
| d1t4ba2 | 221 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 99.81 | |
| d1mb4a2 | 222 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 99.81 | |
| d2hjsa2 | 190 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 99.77 | |
| d2gz1a2 | 202 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 99.72 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 99.65 | |
| d2czca1 | 162 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.64 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 99.63 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 99.49 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 99.31 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 99.13 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 99.11 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 99.08 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 99.06 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 98.18 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.89 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.54 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.48 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 97.45 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.21 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.15 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 96.9 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 96.68 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 96.65 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 96.61 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.1 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 95.62 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 95.52 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 95.02 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 94.99 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.83 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.82 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 94.32 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.32 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.87 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 93.75 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 93.5 | |
| d2g17a2 | 155 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 93.01 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 92.81 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.65 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 92.23 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 92.06 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 91.9 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 91.6 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 91.53 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 91.48 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 91.41 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 91.37 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.0 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 90.9 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 90.76 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 90.68 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 90.64 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 90.56 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 90.47 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 90.28 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 90.27 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 90.11 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 90.09 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 89.75 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 89.73 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 89.24 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 89.19 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 88.87 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 88.82 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 88.5 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 88.29 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 88.28 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 87.83 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 87.8 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 87.78 | |
| d2cvoa2 | 165 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 87.63 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 87.55 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 87.29 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 86.62 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 86.45 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 86.27 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 86.22 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 86.09 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 86.09 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 84.67 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 84.62 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 84.46 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 83.28 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 83.18 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 83.0 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 82.98 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 82.88 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 82.82 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 82.23 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 82.08 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 81.5 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 81.46 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 81.24 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 81.22 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 81.02 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 80.83 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 80.61 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 80.48 |
| >d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=100.00 E-value=3.3e-65 Score=461.93 Aligned_cols=163 Identities=67% Similarity=1.040 Sum_probs=162.3
Q ss_pred cchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHH
Q 014890 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 299 (416)
Q Consensus 220 CTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~k 299 (416)
||||||||++|+||++| ||++|.|||||+||++|+++|.+|+||||+|+|++||||++||++|++++
T Consensus 1 CTTNclaP~~kvl~~~f-------------gI~~g~mTTvHa~T~~Q~l~D~~~~d~Rr~Raa~~niIPtsTgAakav~~ 67 (163)
T d3cmco2 1 CTTNCLAPFAKVLHEQF-------------GIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVAL 67 (163)
T ss_dssp HHHHHHHHHHHHHHHHH-------------CEEEEEEEEEEECCTTSBSSSCCCSSTTTTSBTTTCCEEEECSHHHHHHH
T ss_pred ChhHHHHHHHHHHHhhc-------------CeeEEEEEeeccccCcccCCCCCCcchhccchHhhCCCCccccHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCC
Q 014890 300 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 379 (416)
Q Consensus 300 VlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~ 379 (416)
|||+|+|||+|+|+||||++||++||+++++|++++||||++|+++++++|||||+|++||+||+||+|++||+|||+.+
T Consensus 68 vlP~L~gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~k~as~~~lkgil~~t~~plVSsDf~g~~~SsI~D~~~ 147 (163)
T d3cmco2 68 VLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALS 147 (163)
T ss_dssp HCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEEGGG
T ss_pred hhHHhCCCcceEEEecCCCcceeEEEEEEecCcCCHHHHHHHHHHHhcCCccCcceeeecccchhhccCCCccEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCceEEEEEEec
Q 014890 380 TLVMGDDMVKVIAWYD 395 (416)
Q Consensus 380 t~v~~~~~vK~~~WyD 395 (416)
|++++++++|+++|||
T Consensus 148 t~v~~~~~vKv~aWYD 163 (163)
T d3cmco2 148 TMVIDGKMVKVVSWYD 163 (163)
T ss_dssp CEEETTTEEEEEEEEC
T ss_pred CEEECCCEEEEEEEeC
Confidence 9999999999999998
|
| >d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=3.6e-64 Score=455.41 Aligned_cols=163 Identities=96% Similarity=1.372 Sum_probs=162.3
Q ss_pred cchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHH
Q 014890 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 299 (416)
Q Consensus 220 CTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~k 299 (416)
||||||||++|+|||+| ||++|.|||||+||++|+++|.+|+||||+|++++||||++||++|++.+
T Consensus 1 CTTN~laP~~kvl~~~f-------------gI~~g~mtTvHa~T~~Q~l~D~~~~d~rr~Raa~~niIPt~Tga~kai~~ 67 (163)
T d1rm4a2 1 CTTNCLAPFVKVLDQKF-------------GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVAL 67 (163)
T ss_dssp HHHHHHHHHHHHHHHHH-------------CEEEEEEEEEEECCTTSCSSSCCCSSTTTTSCTTTCCEEECCCHHHHHHH
T ss_pred ChhHhHHHHHHHHHHhC-------------CeeEEEEEEeccccCCcCcccCCCCcccccchhhcccCcCcccHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCC
Q 014890 300 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 379 (416)
Q Consensus 300 VlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~ 379 (416)
|||+|+|||.|+|+||||++||++||+++++|++++||||++|+++++++++|||+|+++|+||+||+|++||+|||+.+
T Consensus 68 vlP~L~gki~g~a~RVPt~nvS~vDl~~~l~k~~t~eein~~~~~as~~~~~~il~~~~eplVSsDf~g~~~SsI~D~~~ 147 (163)
T d1rm4a2 68 VLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSL 147 (163)
T ss_dssp HCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCSSEEEEGGG
T ss_pred hChhhcCCcceEEEecCCCCceeEEEEEeccCCCCHHHHHHHHHHHhhCcccCccccccCccccccccCCCCcEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCceEEEEEEec
Q 014890 380 TLVMGDDMVKVIAWYD 395 (416)
Q Consensus 380 t~v~~~~~vK~~~WyD 395 (416)
|+++|++++|+++|||
T Consensus 148 t~v~~~~lvKi~~WYD 163 (163)
T d1rm4a2 148 TMVMGDDMVKVIAWYD 163 (163)
T ss_dssp CEEETTTEEEEEEEEC
T ss_pred CEEECCCEEEEEEEcC
Confidence 9999999999999999
|
| >d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=100.00 E-value=6.9e-64 Score=453.33 Aligned_cols=163 Identities=46% Similarity=0.778 Sum_probs=160.4
Q ss_pred cchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccch-hHHHhhhccccccccCCCChHHHHH
Q 014890 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVA 298 (416)
Q Consensus 220 CTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~-~d~rr~Raaa~NIIPt~tGaakav~ 298 (416)
||||||||++|+||++| ||++|+|||||+||++|+++|.+| +|+||+|+|++||||++||++|++.
T Consensus 1 CTTNclaP~~kvl~~~f-------------gI~~g~mTTiHayT~~Q~l~D~~~~~~~Rr~Raa~~niIPttTgAakAv~ 67 (164)
T d1u8fo2 1 CTTNCLAPLAKVIHDNF-------------GIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVG 67 (164)
T ss_dssp HHHHHHHHHHHHHHHHH-------------CEEEEEEEEEEECCTTSBSSSCCCTTCGGGGSBTTTCCEEEECCTTTTHH
T ss_pred ChhHHHHHHHHHHHhhc-------------CeeEEEEEeeecccCccccccccccCccccCCCCcCcceeccccHHHHHH
Confidence 99999999999999999 999999999999999999999765 6789999999999999999999999
Q ss_pred HHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCC
Q 014890 299 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSS 378 (416)
Q Consensus 299 kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~ 378 (416)
+|||+|+|||.|+|+||||++||++||+++++|++++||||++|+++++++|+|||+|+++|+||+||+|++||+|||+.
T Consensus 68 ~vlP~L~gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~eevn~~l~~aa~~~lk~Il~~~~eplVSsDf~g~~~S~IvD~~ 147 (164)
T d1u8fo2 68 KVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAG 147 (164)
T ss_dssp HHSGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEETT
T ss_pred HhChhhcCCccceEEecCCCCcceeeEEEEEcCcCCHHHHHHHHHHHhcCCccCcccccccceeecccCCCCccEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCceEEEEEEec
Q 014890 379 LTLVMGDDMVKVIAWYD 395 (416)
Q Consensus 379 ~t~v~~~~~vK~~~WyD 395 (416)
+|++++++++|+++|||
T Consensus 148 ~T~v~~~~~vKv~aWYD 164 (164)
T d1u8fo2 148 AGIALNDHFVKLISWYD 164 (164)
T ss_dssp TCEEEETTEEEEEEEEC
T ss_pred CCEEECCCEEEEEEEcC
Confidence 99999999999999998
|
| >d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=100.00 E-value=7.8e-63 Score=446.30 Aligned_cols=162 Identities=57% Similarity=0.882 Sum_probs=160.5
Q ss_pred cchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHH
Q 014890 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 299 (416)
Q Consensus 220 CTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~k 299 (416)
||||||||++|+||++| ||++|.|||||+||++|+++|.+|+|+||+|+|++||||++||++|++.+
T Consensus 1 CTTNclaP~~kil~~~f-------------gI~~g~~tTiH~~t~~Q~l~D~~~~d~rr~Rsa~~niIPt~Tgaakai~~ 67 (162)
T d2g82a2 1 CTTNSLAPVMKVLEEAF-------------GVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATAL 67 (162)
T ss_dssp HHHHHHHHHHHHHHHHT-------------CEEEEEEEEEEECCTTSBSSSCCCSSTTTTSBGGGCCEEECCCHHHHHHH
T ss_pred ChhHhHHHHHHHHHhhc-------------CeeEEEEEeeccccCccccCCCCCCCccccchhhcccCcccCccchhhch
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCC
Q 014890 300 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 379 (416)
Q Consensus 300 VlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~ 379 (416)
|||+|+|||.|+|+||||++||++||+++++|++++||||++|+++++++++|||+|+++|+||+||+|+++|+|||+.+
T Consensus 68 vlP~L~gki~g~a~RVPt~nvS~vDl~~~l~k~~s~eeIn~~lk~aa~~~~~~il~~~~eplVS~Df~g~~~S~I~D~~~ 147 (162)
T d2g82a2 68 VLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKL 147 (162)
T ss_dssp HCGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGG
T ss_pred hhHhhCCCceeEEEeecccccceEEEEEEecCcCCHHHHHHHHHHHccCCCcCeeeEecccceehhcCCCCCceEEEhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCceEEEEEEec
Q 014890 380 TLVMGDDMVKVIAWYD 395 (416)
Q Consensus 380 t~v~~~~~vK~~~WyD 395 (416)
|+++| +++|+++|||
T Consensus 148 T~v~g-~~vKi~~WYD 162 (162)
T d2g82a2 148 TKALG-NMVKVFAWYD 162 (162)
T ss_dssp CEEET-TEEEEEEEEC
T ss_pred ceEeC-CEEEEEEEeC
Confidence 99996 6999999999
|
| >d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=100.00 E-value=4.4e-62 Score=441.48 Aligned_cols=162 Identities=57% Similarity=0.859 Sum_probs=159.6
Q ss_pred CcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHH
Q 014890 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 298 (416)
Q Consensus 219 SCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~ 298 (416)
|||||||||++|+|||+| ||++|.|||+|+||++|+++|.+|+|+||+|++++||||++||++|++.
T Consensus 1 SCTTN~laP~~kvl~~~f-------------gI~~g~mtTvHa~t~~Q~l~D~~~~d~r~~Raa~~niIP~sTgAakav~ 67 (162)
T d1obfo2 1 SCTTNCLAPLVKPLNDKL-------------GLQDGLMTTVHAYTNNQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVG 67 (162)
T ss_dssp CHHHHHHHHHHHHHHHHT-------------CEEEEEEEEEEECCTTSCSSCCCCSSTTTTSCTTTCCEEEECCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhc-------------CeeEEEEEEeecccccccccccccccccccccccceeeeecCCchhhHh
Confidence 899999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCC
Q 014890 299 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSS 378 (416)
Q Consensus 299 kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~ 378 (416)
+|||+|+|||.|+|+||||++||++||+++++|++++||||++|+++++++|+|||+|++||+||+||+|+++|+|||+.
T Consensus 68 ~viP~L~gki~g~a~RVPt~~vS~vDLt~~l~k~~t~eein~~l~~aa~~~~~~il~~t~eplVSsDf~g~~~S~I~D~~ 147 (162)
T d1obfo2 68 DVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVDAS 147 (162)
T ss_dssp HHCGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGG
T ss_pred HhChhhCCCCCceEEeccccCcceeeEEEEecCCCCHHHHHHHHHHHhhCcccCcccccCCccCCccccCCCceeEEcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCceEEEEEEe
Q 014890 379 LTLVMGDDMVKVIAWY 394 (416)
Q Consensus 379 ~t~v~~~~~vK~~~Wy 394 (416)
+|.+ +++++|+++||
T Consensus 148 ~t~v-~g~~vKi~~WY 162 (162)
T d1obfo2 148 LTKV-SGRLVKVSSWY 162 (162)
T ss_dssp GCEE-ETTEEEEEEEE
T ss_pred HceE-CCCEEEEEEEC
Confidence 9986 56899999999
|
| >d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=2e-62 Score=446.48 Aligned_cols=163 Identities=50% Similarity=0.815 Sum_probs=159.3
Q ss_pred CcchhhhHHHHHHH-HHHhhhhccccccccccceeEEEEEeecccccchhhhcc-chhHHHhhhccccccccCCCChHHH
Q 014890 219 SCTTNCLAPFVKVL-DQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKA 296 (416)
Q Consensus 219 SCTTn~Lap~lkvL-~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~-~~~d~rr~Raaa~NIIPt~tGaaka 296 (416)
|||||||||++|+| ||+| ||++|.|||+|+||++|+++|. .++|+||+|+|++||||++||++|+
T Consensus 1 SCTTNclaP~~kvL~~~~f-------------gI~~g~mtTvHa~T~~Q~~lD~~~~~d~Rr~Raa~~nIIPtsTgAaka 67 (169)
T d1k3ta2 1 SCTTNCLAPIVHVLVKEGF-------------GVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKA 67 (169)
T ss_dssp CHHHHHHHHHHHHHHHTTC-------------CCSEEEEEEEEECCTTSBSSSCCCSSCTGGGSBGGGCCEEEECSHHHH
T ss_pred CcHHHHHHHHHHHhhcccc-------------ceeEEEEEEeccccCCCcccccccCCCCcCccccccccccccchHHHH
Confidence 89999999999997 9999 9999999999999999999995 5699999999999999999999999
Q ss_pred HHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeee
Q 014890 297 VALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVD 376 (416)
Q Consensus 297 v~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D 376 (416)
+++|||+|+|||.|+|+||||++||++||+++++|++++||||++|+++++++|||||+|++||+||+||+|++||+|||
T Consensus 68 v~~vlP~L~gKi~g~a~RVPt~nvS~vDLt~~l~k~~t~eein~~~~~as~~~~kgil~~t~eplVS~Df~g~~~SsI~D 147 (169)
T d1k3ta2 68 VGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYD 147 (169)
T ss_dssp HHHHSGGGTTTEEEEEEEESCSSCEEEEEEEECSSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEE
T ss_pred HHHhccccCCCccceeecccccccceeeeeeeccccchhhHHHHHHHHHhhCCCCCceeEecCcEEeeccCCCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccC----CceEEEEEEe
Q 014890 377 SSLTLVMG----DDMVKVIAWY 394 (416)
Q Consensus 377 ~~~t~v~~----~~~vK~~~Wy 394 (416)
+.+|++++ ++++|+++||
T Consensus 148 ~~~t~v~~~~~~~~lvKv~aWY 169 (169)
T d1k3ta2 148 SKATLQNNLPKERRFFKIVSWY 169 (169)
T ss_dssp HHHHHHSSCTTCSSEEEEEEEE
T ss_pred cccceecccccCCCEEEEEEeC
Confidence 99998875 8999999999
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-59 Score=426.98 Aligned_cols=163 Identities=44% Similarity=0.718 Sum_probs=157.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+|||||||||||||.++|++++++ +++||+|||+.++++++|||+|||+||+|+++++ .+++.|.++|++|++++++
T Consensus 1 tikigINGFGRIGR~v~R~~~~~~--~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~-~~~~~l~ing~~I~i~~~~ 77 (166)
T d1gado1 1 TIKVGINGFGRIGRIVFRAAQKRS--DIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAER 77 (166)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCS--SEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEE-EETTEEEETTEEEEEECCS
T ss_pred CeEEEEECCcHHHHHHHHHHhhCC--CeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEE-EeCCEEEECCEEEEEEeCC
Confidence 379999999999999999999985 4999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (416)
+|+++||+++|+|+||||||.|.+++.+++|+++||||||||||++|++||||||||++.|++ ++|||+||||||||||
T Consensus 78 ~p~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~d~~~~iV~GvN~~~~~~-~~iiS~aSCTTnclaP 156 (166)
T d1gado1 78 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASNETGYSNK 156 (166)
T ss_dssp SGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCCS-CSEEECCCTTHHHHHH
T ss_pred ChHHCCccccCCCEEEEccccccCHHHHHHHhcCCCceEEeeccccccCCEEEeCccccccCC-CCEEEeccHHHhHHHH
Confidence 999999999999999999999999999999999999999999999988999999999999986 5799999999999999
Q ss_pred HHHHHHH
Q 014890 228 FVKVLDQ 234 (416)
Q Consensus 228 ~lkvL~~ 234 (416)
++|+|+.
T Consensus 157 v~kvl~~ 163 (166)
T d1gado1 157 VLDLIAH 163 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999965
|
| >d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=100.00 E-value=1.1e-59 Score=429.01 Aligned_cols=169 Identities=47% Similarity=0.749 Sum_probs=162.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
+||||||||||||.++|++++++ ++++|+|||+.++++++|||+|||+||+|+.+++ .+++.|.++|+.|+++++++
T Consensus 2 ikIgINGfGRIGR~v~R~~l~~~--~~~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~-~~~~~l~i~g~~i~i~~~~~ 78 (171)
T d3cmco1 2 VKVGINGFGRIGRNVFRAALKNP--DIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVS-VNGNNLVVNGKEIIVKAERD 78 (171)
T ss_dssp EEEEEESCSHHHHHHHHHHTTCT--TEEEEEEECSSCHHHHHHHHHEETTTEECSSCEE-EETTEEEETTEEEEEECCSS
T ss_pred eEEEEECCCHHHHHHHHHHhhCC--CcEEEEEcCCCCHHHHhhhhcccccCCccccccc-ccCCCEEeCCcceeeEecCC
Confidence 79999999999999999999875 4999999999999999999999999999999999 89999999999999999999
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCC-CCeEecCCcchhhhHH
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAP 227 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~-~~IISnaSCTTn~Lap 227 (416)
|.++||++.|+|+||||||.|.+++.+..|+++||||||||||++++++|+||||||+.|++. ++||||+|||||||+|
T Consensus 79 p~~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~~d~~~t~V~GvN~~~~~~~~~~iIS~aSCTtn~laP 158 (171)
T d3cmco1 79 PENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASNETGYSHR 158 (171)
T ss_dssp GGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTSGGGCCTTTCCEEECCCTTHHHHHH
T ss_pred HHHccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEEecccccccceeeeccchheecCCCCeEEEehhHHHhHHHH
Confidence 999999999999999999999999999999999999999999999878899999999999975 7999999999999999
Q ss_pred HHHHHHHHhhhhccccccccccceeEEE
Q 014890 228 FVKVLDQKFVTQLNDRIFPMCAGIIKGT 255 (416)
Q Consensus 228 ~lkvL~~~f~~~~~~~~~~~~~GI~~~~ 255 (416)
++|+|| | ||++|+
T Consensus 159 v~kvl~--f-------------gi~~G~ 171 (171)
T d3cmco1 159 VVDLAA--Y-------------IASKGL 171 (171)
T ss_dssp HHHHHH--H-------------HHHTCC
T ss_pred HHHHHH--h-------------hHhhCC
Confidence 999995 9 998763
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=100.00 E-value=1.3e-59 Score=427.89 Aligned_cols=162 Identities=40% Similarity=0.651 Sum_probs=157.3
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
||||||||||||+++|++++++ +++|+||| ..++++++|||||||+||+|+.+++ .+++.|.+||++|+++++++
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~---~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~-~~~~~l~ing~~I~~~~~~~ 77 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMG---AQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVK-AEDGALVVDGKKITVFNEMK 77 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHT---CCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEE-EETTEEEETTEEEEEECCSS
T ss_pred eEEEECCcHHHHHHHHHHHhCC---CcEEEECCCCcCHHHHHHHHhcccccCCcCCeEE-EeCCEEEECCEEEEEEecCC
Confidence 8999999999999999999874 89999999 5899999999999999999999999 88999999999999999999
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHHH
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPF 228 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap~ 228 (416)
|+++||+++|+|+||||||.|.+++.+..|+++||||||||||++| +|++|+|||++.|+++++||||+|||||||||+
T Consensus 78 p~~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~d-~~~iV~GVN~~~~~~~~~IIS~aSCTtn~laP~ 156 (169)
T d1dssg1 78 PENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSAD-APMFVCGVNLEKYSKDMKVVSNASNEFGYSQRV 156 (169)
T ss_dssp GGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSS-SCBCCTTTSGGGCCTTCCEEECCCTTHHHHHHH
T ss_pred hHHCCccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCccc-cceeeecccccccCCCCCEEEChhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999985 799999999999998889999999999999999
Q ss_pred HHHHHHHh
Q 014890 229 VKVLDQKF 236 (416)
Q Consensus 229 lkvL~~~f 236 (416)
+|+||++|
T Consensus 157 ~k~l~~~f 164 (169)
T d1dssg1 157 IDLIKHMQ 164 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999999
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=5.8e-59 Score=424.53 Aligned_cols=168 Identities=77% Similarity=1.240 Sum_probs=158.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
|||||||||||||+++|+++++++++++||+|||+.++++++|||||||+||+|+++++..+++.+.+||++|+++++++
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~ 80 (172)
T d1rm4a1 1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRN 80 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCC
Confidence 69999999999999999999987777999999999999999999999999999999998344566789999999999999
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhh---h
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNC---L 225 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~---L 225 (416)
|.++||+++|+|+||||||.|.+++.+..|+++||||||||||+++++||+|||||++.|+++++||||||||||| |
T Consensus 81 p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~k~~~~tiV~GVN~~~~~~~~~iIS~aSCTtn~~~~l 160 (172)
T d1rm4a1 81 PVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASNEWGYSQRV 160 (172)
T ss_dssp GGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCCBSSCCBCCTTTTGGGCCTTCSEEECCCTTHHHHHHH
T ss_pred hHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEeecccccceeeEEeecchhhcCCCCCEEEcccchhccHhHh
Confidence 9999999999999999999999999999999999999999999998899999999999999889999999999555 9
Q ss_pred HHHHHHHHHHh
Q 014890 226 APFVKVLDQKF 236 (416)
Q Consensus 226 ap~lkvL~~~f 236 (416)
+|++++||++|
T Consensus 161 ~pv~~vi~~~f 171 (172)
T d1rm4a1 161 VDLADIVANKW 171 (172)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhc
Confidence 99999999998
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5e-58 Score=417.41 Aligned_cols=166 Identities=50% Similarity=0.733 Sum_probs=160.9
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCC
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p 149 (416)
||||||||||||.++|+++++.+++++||+|||+.++++++|||+|||+||+|+.+++ .+++.|.+||++|+++++++|
T Consensus 2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~-~~~~~l~ing~~I~~~~~~~p 80 (169)
T d1hdgo1 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVE-YTENSLIVDGKEIKVFAEPDP 80 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEE-ECSSEEEETTEEEEEECCSSG
T ss_pred EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEE-EECCEEEECCEEEEEEeCCCh
Confidence 8999999999999999999876667999999999999999999999999999999999 799999999999999999999
Q ss_pred CCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHHHH
Q 014890 150 VNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFV 229 (416)
Q Consensus 150 ~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap~l 229 (416)
+++||+++|+|+||||||.|.+++.++.|+++||||||||||+++++||||+||||+.|+++++|||++||||||++|++
T Consensus 81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~kd~~~tiV~GvN~~~~~~~~~iiS~aScttn~~a~v~ 160 (169)
T d1hdgo1 81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASNEYGYSNRVV 160 (169)
T ss_dssp GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTCCEEECCCTTHHHHHHHH
T ss_pred hhCCccccCCCEEEEecceeccccchhhhccCCCceEEEecccCCCcceeEEecchhhcCCcCcEEEchhHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999888999999999999998999999999999999999
Q ss_pred HHHHHHh
Q 014890 230 KVLDQKF 236 (416)
Q Consensus 230 kvL~~~f 236 (416)
++||..+
T Consensus 161 ~vi~~l~ 167 (169)
T d1hdgo1 161 DTLELLL 167 (169)
T ss_dssp HHHHHGG
T ss_pred HHHHHHh
Confidence 9999876
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=3.1e-58 Score=425.54 Aligned_cols=170 Identities=36% Similarity=0.636 Sum_probs=156.5
Q ss_pred cceeEEEEccChhHHHHHHHHHhCC--CCCceEEEEecC-CChhHHhhhhccccccccCCCceeee-------cCCeEEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRK--DSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKPV-------GTDGISV 136 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~--~~~~~vVaINd~-~~~~~~a~LlkyDS~~G~f~~~v~~~-------~~~~i~v 136 (416)
|+|||||||||||||.++|++++++ .++++||+|||+ .++++++|||||||+||+|+++|+.. .++.+.+
T Consensus 1 M~ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~ 80 (190)
T d1k3ta1 1 MPIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVV 80 (190)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEE
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCCceEEEccCccccccccceEE
Confidence 7899999999999999999999874 246999999996 79999999999999999999998732 2456788
Q ss_pred CCEEEE-EEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCC-CCe
Q 014890 137 DGKVIQ-VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPI 214 (416)
Q Consensus 137 ~G~~I~-v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~-~~I 214 (416)
+|+.|. +.++++|.++||+++||||||||||.|.+++.++.|+++||||||||||.++++|||||||||+.|+++ ++|
T Consensus 81 ~g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~~~~~tiV~GVN~~~y~~~~~~I 160 (190)
T d1k3ta1 81 NGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHV 160 (190)
T ss_dssp TTEEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSSCEECCTTTTGGGCCTTTCSE
T ss_pred cCceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeeeccCCcccCCeEEeccCHhhcCCccCcE
Confidence 997764 667899999999999999999999999999999999999999999999998889999999999999975 689
Q ss_pred EecCCcchhhhHHHHHHHHHHh
Q 014890 215 ISNASCTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 215 ISnaSCTTn~Lap~lkvL~~~f 236 (416)
||+||||||||+|++|+|++.|
T Consensus 161 IS~ASCTtn~lapv~kvi~~~f 182 (190)
T d1k3ta1 161 VSNADNEWGYSHRVVDLVRHMA 182 (190)
T ss_dssp EECCCTTHHHHHHHHHHHHHHH
T ss_pred EEchhHhhhHHHHHHHHHHHHh
Confidence 9999999999999999999999
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=100.00 E-value=1e-57 Score=414.75 Aligned_cols=163 Identities=47% Similarity=0.754 Sum_probs=157.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
|||||||||||||.++|+|+++. ++||+|||+.++++++|||+|||+||+|+.+++ .+++.|.++|++|+++++++
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~---i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~-~~~~~l~i~g~~I~~~~~~~ 76 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVA-YDDQYLYVDGKAIRATAVKD 76 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT---CCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEE-ECSSEEEETTEEEEEECCSS
T ss_pred CEEEEECCcHHHHHHHHHHhcCC---CEEEEECCCcchhhhhheeecccccCccccccc-cccceeEecceeEEEEecCC
Confidence 69999999999999999998864 999999999999999999999999999999999 78999999999999999999
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCC-CCeEecCCcc---hhh
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCT---TNC 224 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~-~~IISnaSCT---Tn~ 224 (416)
|+++||++.|+|+|+||||.|.+++.++.|+++||||||||||+++++|+|||||||+.|+++ ++|||||||| |||
T Consensus 77 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~kd~~~~iV~GvN~~~y~~~~~~IIS~ASCT~~~tN~ 156 (168)
T d2g82a1 77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASNEWGYANR 156 (168)
T ss_dssp GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTTCCEEECCCTTHHHHHH
T ss_pred hHHCcccccCCceeEeccccccchHHhhhhhccccceeeeccccccccceeEeeccHHHccCCCCcEEEeccccCccHHH
Confidence 999999999999999999999999999999999999999999999888999999999999975 7999999999 999
Q ss_pred hHHHHHHHHHH
Q 014890 225 LAPFVKVLDQK 235 (416)
Q Consensus 225 Lap~lkvL~~~ 235 (416)
|||++|+||++
T Consensus 157 laPv~k~i~~k 167 (168)
T d2g82a1 157 VADLVELVLRK 167 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999999986
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=100.00 E-value=2.4e-57 Score=412.82 Aligned_cols=164 Identities=39% Similarity=0.660 Sum_probs=157.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||||||||||+++|++++++ ++++|+||| .+++++++|||+|||+||+|+++++ .+++.|.++|++|+++++
T Consensus 1 kikIgINGFGRIGR~v~R~~~~~~--~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~-~~~~~l~i~~~~I~~~~~ 77 (169)
T d1u8fo1 1 KVKVGVNGFGRIGRLVTRAAFNSG--KVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVK-AENGKLVINGNPITIFQE 77 (169)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHC--SSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEE-EETTEEEETTEEEEEECC
T ss_pred CcEEEEECCcHHHHHHHHHHHHCC--CcEEEEecCCCccHHHHHHHHhhccccCCcCCeEE-EECCEEEECCEEEEEEEC
Confidence 589999999999999999999875 499999999 5899999999999999999999999 899999999999999999
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhH
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~La 226 (416)
++|.++||+++|+|||+||||.|.+++.+..|+++||||||||||++| +||+|+|||++.|+++++|||||||||||||
T Consensus 78 ~~p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~~d-~~tiV~GvN~~~~~~~~~iIS~aSCTtn~~a 156 (169)
T d1u8fo1 78 RDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSAD-APMFVMGVNHEKYDNSLKIISNASNEFGYSN 156 (169)
T ss_dssp SSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCSS-SCBCCTTTTGGGCCTTCSEEECCCTTHHHHH
T ss_pred CChhhCCccccCCCEEEEecceeccHHHHHHHHhcCCceEeecccccc-cceEEeecCHHHcCCCCCEEECccHHHHHHH
Confidence 999999999999999999999999999999999999999999999985 7899999999999998899999999999999
Q ss_pred HHHHHHHHH
Q 014890 227 PFVKVLDQK 235 (416)
Q Consensus 227 p~lkvL~~~ 235 (416)
|++++|..-
T Consensus 157 Pv~~vl~~~ 165 (169)
T d1u8fo1 157 RVVDLMAHM 165 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999643
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=1.6e-56 Score=406.22 Aligned_cols=161 Identities=43% Similarity=0.691 Sum_probs=155.4
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
||||||||||||+++|++++++ +++||+||| .+++++++|||||||+||+|+.+++ .+++.|.++|++|+++++++
T Consensus 2 kigINGfGRIGR~v~R~~~~~~--~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~-~~~~~l~i~~~~I~i~~~~~ 78 (166)
T d2b4ro1 2 KLGINGFGRIGRLVFRAAFGRK--DIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVT-HADGFLLIGEKKVSVFAEKD 78 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCS--SEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEE-EETTEEEESSCEEEEECCSS
T ss_pred eEEEECCCHHHHHHHHHHhhCC--CcEEEEECCCCCChHHhhhhhhcccccccceeeec-cCCceEEecCcEEEEEeCCC
Confidence 8999999999999999999975 499999999 4799999999999999999999999 89999999999999999999
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHHH
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPF 228 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap~ 228 (416)
|.++||+++|+|+||||||.|.+++.++.|+++||||||||||+++++||+||||||+.|+++++||||||| ||+|+
T Consensus 79 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~kd~~~tiV~GVN~~~~~~~~~IIS~AS~---~~ap~ 155 (166)
T d2b4ro1 79 PSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASN---EWGYS 155 (166)
T ss_dssp GGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCCTTCCEEECCCT---THHHH
T ss_pred hHHccccccCCCEEEEecccccchhhhhhhhccCCCEEEEecccccccceeeeecchhhcCCCCCEEEChhH---HHHHH
Confidence 999999999999999999999999999999999999999999999889999999999999988899999997 56899
Q ss_pred HHHHHHHh
Q 014890 229 VKVLDQKF 236 (416)
Q Consensus 229 lkvL~~~f 236 (416)
+|+||++|
T Consensus 156 ~kvl~~~f 163 (166)
T d2b4ro1 156 NRVLDLAV 163 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99999999
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=100.00 E-value=2e-56 Score=408.03 Aligned_cols=170 Identities=45% Similarity=0.735 Sum_probs=161.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC-CCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK-DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~-~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+|||||||||||||+++|+++++. +++++||+|||+.++++++|||||||+||+|+.+++ .+++.|.+||++|+++++
T Consensus 1 tikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~-~~~~~l~i~g~~i~i~~~ 79 (173)
T d1obfo1 1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVS-VNGSYMVVNGDKIRVDAN 79 (173)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEE-EETTEEEETTEEEEEECC
T ss_pred CeEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEE-eccceEEECCEEEEEEec
Confidence 379999999999999999999764 357999999999999999999999999999999999 899999999999999999
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCC-CCeEEeecCccCCCCCCCeEecCCcchhhh
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDEPIISNASCTTNCL 225 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~-~ptvV~gVN~~~y~~~~~IISnaSCTTn~L 225 (416)
++|+++||+++|+|+||||||.|.+++.+.+|+++||||||||||++++ +|||||||||+.|+++++||||||
T Consensus 80 ~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~~~~d~tiV~GVN~~~~~~~~~IISnAs------ 153 (173)
T d1obfo1 80 RNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKSTDTVISNAD------ 153 (173)
T ss_dssp SCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCCTTSSEECCTTTSGGGCCTTCCEEECCC------
T ss_pred CCHHHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecCCCCCCcceEEEecchhhcCCCCCEEECCc------
Confidence 9999999999999999999999999999999999999999999999864 699999999999999899999998
Q ss_pred HHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc
Q 014890 226 APFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD 265 (416)
Q Consensus 226 ap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~ 265 (416)
++| ||++++|||+|++|.+
T Consensus 154 --------~~f-------------gI~~g~mtTih~~tsa 172 (173)
T d1obfo1 154 --------NEW-------------GFSNRMLDTTVALMSA 172 (173)
T ss_dssp --------TTH-------------HHHHHHHHHHHHHHHC
T ss_pred --------ccc-------------CceeeEEEeeheeeec
Confidence 899 9999999999999864
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=8.3e-45 Score=331.87 Aligned_cols=160 Identities=17% Similarity=0.195 Sum_probs=135.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc-cccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk-yDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|+||||||||||||+++|++++++ +++||+|||..+.....++++ +++.|++++.... ++++.+.++|
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~--dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~g-------- 69 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQP--DMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKK-FEESGIPVAG-------- 69 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCT--TEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHH-HHTTTCCCCC--------
T ss_pred CeEEEEECCCHHHHHHHHHHHhCC--CCEEEEEECCCCcHHHHHhcccCcceeccCcccee-ccccceecCC--------
Confidence 489999999999999999999986 499999999766556666665 5567777776655 6667666655
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCC--CCeEEeecCccCCC-CC-CCeEecCCcch
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD--IPTYVVGVNADAYK-PD-EPIISNASCTT 222 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~--~ptvV~gVN~~~y~-~~-~~IISnaSCTT 222 (416)
+++|...++|+||||||.|.+++.++.|+++| +||||++|++++ ++|||+||||++|. ++ ++|||||||||
T Consensus 70 ----~~~~~~~~vDiViecTG~f~~~e~a~~hl~~G-~KvIi~~~~~~~~~~~t~V~GvN~~~~~~~~~~~vVSnAsctt 144 (178)
T d1b7go1 70 ----TVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQGGEKAEVADISFSALCNYNEALGKKYIRVVSESIVVP 144 (178)
T ss_dssp ----CHHHHHHHCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTTSCGGGSSCEECHHHHHHHHTTCSEEEECCTTTHHH
T ss_pred ----chhhhhhcCCEEEECCCCcCCHHHHHHHHHcC-CEEEEECCCCccccCCeEEeCcchHHhcCCCCCEEEeCCcccc
Confidence 46788889999999999999999999999999 578999998864 56999999999854 44 37999999999
Q ss_pred hhhHHH------------HHHHHHHhhhhccccccccccceeEEEE
Q 014890 223 NCLAPF------------VKVLDQKFVTQLNDRIFPMCAGIIKGTM 256 (416)
Q Consensus 223 n~Lap~------------lkvL~~~f~~~~~~~~~~~~~GI~~~~m 256 (416)
|||+|+ +|+|+|+| ||++|.|
T Consensus 145 n~lap~~~~~~~~~~~~~~kv~~~~~-------------gi~~g~~ 177 (178)
T d1b7go1 145 ENIDAIRASMKLMSAEDSMRITNESL-------------GILKGYL 177 (178)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHT-------------TCCCSBC
T ss_pred cccHHHHHHHHhhccccceeeecccc-------------ceeeeee
Confidence 999999 99999999 9999876
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=7.8e-45 Score=330.11 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=130.8
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccc-cccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYD-STLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyD-S~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
|++||||||||||||+++|++.+++ +++||+|||+.+.+.++||++|+ +.|+.+...+....+..+.+
T Consensus 1 M~irIaINGfGRIGR~v~Ral~~~~--dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------- 69 (172)
T d2czca2 1 MKVKVGVNGYGTIGKRVAYAVTKQD--DMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEV--------- 69 (172)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCT--TEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCC---------
T ss_pred CcEEEEEECCCHHHHHHHHHHHhCC--CceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccc---------
Confidence 8899999999999999999999875 49999999987777777888875 23333332222122222222
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCC-CCeEEeecCccCCCCCC-CeEecCCcchh
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDE-PIISNASCTTN 223 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~-~ptvV~gVN~~~y~~~~-~IISnaSCTTn 223 (416)
..+++|...++|+||||||.|.+++.++.|+++|+||||+++|.+++ ++|||+||||+.|.+.+ .+|+++|||||
T Consensus 70 ---~~~~~~~~~~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~~~~~~t~v~GvNh~~~~~~~~~~v~scsctTn 146 (172)
T d2czca2 70 ---AGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVVVIPENID 146 (172)
T ss_dssp ---SCBHHHHHTTCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSCGGGSSEEECHHHHGGGGTTCSEEEECTHHHHHH
T ss_pred ---cchhhhhhccCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCCcccCCCeeEecccchhhcCCCceEEEecCchHH
Confidence 33566666799999999999999999999999999999999887653 68999999999877543 45777788999
Q ss_pred hhHHHHHHHHHHhhhhccccccccccceeEEEEE
Q 014890 224 CLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMT 257 (416)
Q Consensus 224 ~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mT 257 (416)
||+|++|+|++.| ||+++.+|
T Consensus 147 ~lap~~kvld~~~-------------gIe~~~~~ 167 (172)
T d2czca2 147 AIRAMFELADKWD-------------SIKKTNKS 167 (172)
T ss_dssp HHHHHTTCSCHHH-------------HHHHHHHH
T ss_pred HHHHHHHHHhhhc-------------CeeEeeeE
Confidence 9999999999999 99987554
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=100.00 E-value=1.7e-44 Score=327.80 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=124.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccc-cccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYD-STLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyD-S~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|+||||||||||||+++|++.+++ +++||+|||..+.....||++|| +.|+.++..+...++..+.++|+
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~--di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~------- 71 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQD--DMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGT------- 71 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSS--SEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEE-------
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCC--CceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCC-------
Confidence 369999999999999999999876 49999999986666677888877 44566554443244555666553
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCC--CCeEEeecCccCCCCC-CCeEecCCcchh
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD--IPTYVVGVNADAYKPD-EPIISNASCTTN 223 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~--~ptvV~gVN~~~y~~~-~~IISnaSCTTn 223 (416)
++|-..++|+||||||.|.+++.++.|+++|+| ||+++|++++ +.+||+||||+.|.+. +.||||||||||
T Consensus 72 -----~~~~~~~vDvViEcTG~f~~~~~~~~hl~~G~K-~vi~~~~~~~~~~~~~v~GvN~~~~~~~~~~ivS~aSCTTN 145 (171)
T d1cf2o1 72 -----VDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIK-AIFQGGEKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVD 145 (171)
T ss_dssp -----HHHHHHTCSEEEECCSTTHHHHHHHHHHHTTCE-EEECTTSCHHHHSCEECHHHHHHHHTTCSEEEECTHHHHHH
T ss_pred -----hhHhhcCCCEEEEccCCCCCHHHHHHHHHcCCC-EEEECCCCccCCCceeEeccChhhhcCCCCcEEEECCchHH
Confidence 234445899999999999999999999999985 5666666542 4589999999987764 578999999999
Q ss_pred hhHHHHHHHHHHh
Q 014890 224 CLAPFVKVLDQKF 236 (416)
Q Consensus 224 ~Lap~lkvL~~~f 236 (416)
||||++|+||++|
T Consensus 146 clapv~kvl~~~f 158 (171)
T d1cf2o1 146 AVRAILEMEEDKY 158 (171)
T ss_dssp HHHHHTTSCSCHH
T ss_pred hHHHHHHHHHHHc
Confidence 9999999999999
|
| >d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=99.94 E-value=5.4e-28 Score=217.47 Aligned_cols=151 Identities=17% Similarity=0.285 Sum_probs=118.4
Q ss_pred CcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChH-HHH
Q 014890 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAA-KAV 297 (416)
Q Consensus 219 SCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaa-kav 297 (416)
|||||||+|+||+||++| ||+++.|||||++++.+ +++|+++.|+||+.++.. |..
T Consensus 1 SCtT~~l~~~lkpL~~~f-------------gI~~~~vtT~qa~s~~~----------~~~~~~~~niip~~~~~~~~~~ 57 (165)
T d1cf2o2 1 SCNTTGLCRTLKPLHDSF-------------GIKKVRAVIVRRGADPA----------QVSKGPINAIIPNPPKLPSHHG 57 (165)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------CEEEEEEEEEEESSCTT----------CTTCCCSSCCEESSSSSSCTHH
T ss_pred CChHHHHHHHHHHHHHHc-------------CceEEEEEEEECCcCCc----------cccccccccccCCCcHHHHHHH
Confidence 899999999999999999 99999999999999876 357899999999988753 444
Q ss_pred HHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeC
Q 014890 298 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDS 377 (416)
Q Consensus 298 ~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~ 377 (416)
..+.|.|++||+++|+||||+++|+++++++|+++++.|||+++|++++. +. +++.+......+.+++.
T Consensus 58 ~e~~kil~~~i~~tavRVPv~~~H~~~v~v~~~~~~t~eev~~~l~~~~~-----v~------l~~~~~~~~~~~~~~~~ 126 (165)
T d1cf2o2 58 PDVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPR-----VI------LISAEDGLTSTAEIMEY 126 (165)
T ss_dssp HHHHTTSCCCEEEEEEEESCCSCEEEEEEEEESSCCCHHHHHHHHHHSTT-----EE------EECTTTTCCSHHHHHHH
T ss_pred HHhhhhcCCcEEEEEEecCccceEEEEEEEEECCcCCHHHHHHHHHHCCC-----Cc------cccCccCCCCCcchhhh
Confidence 55677778899999999999999999999999999999999999999863 32 22222222223333332
Q ss_pred C--CCcccCCceEEEEEEecCCcchhhhH
Q 014890 378 S--LTLVMGDDMVKVIAWYDNEWGYSQRV 404 (416)
Q Consensus 378 ~--~t~v~~~~~vK~~~WyDNE~gys~R~ 404 (416)
. .+... +++.++..|||+-|-+.+++
T Consensus 127 ~~dvGR~R-~Dl~e~~vw~ds~~v~gd~l 154 (165)
T d1cf2o2 127 AKELGRSR-NDLFEIPVWRESITVVDNEI 154 (165)
T ss_dssp HHHHTCGG-GCCCSEEEEGGGCEEETTEE
T ss_pred cccCCCcc-CccHhheeeccceEEECCEE
Confidence 1 12233 45788999999888666654
|
| >d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.93 E-value=3.1e-27 Score=212.06 Aligned_cols=105 Identities=15% Similarity=0.227 Sum_probs=94.9
Q ss_pred cchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCCh--HHHH
Q 014890 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGA--AKAV 297 (416)
Q Consensus 220 CTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGa--akav 297 (416)
||||||+|+||+||++| ||+++.|||||++++.++ .+++++.+.+..|..+++ ++++
T Consensus 1 CsT~~l~~~lkpL~~~f-------------gi~rv~vtt~qa~s~~g~--------~~~~~~~~~~~~p~~~~~~~~~~v 59 (162)
T d1b7go2 1 CNTTALLRTICTVNKVS-------------KVEKVRATIVRRAADQKE--------VKKGPINSLVPDPATVPSHHAKDV 59 (162)
T ss_dssp HHHHHHHHHHHHHHTTS-------------CEEEEEEEEEEESSCTTC--------CSCCCSSCCEESSSSSSCTHHHHH
T ss_pred CcHHHHHHHHHHHHHHh-------------CEEEEEEEEEeeccCCcc--------ccccccccccccccccccccceee
Confidence 99999999999999999 999999999999998753 456777777777776665 4778
Q ss_pred HHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhccc
Q 014890 298 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 347 (416)
Q Consensus 298 ~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~ 347 (416)
.+++|+| ||+++|+||||+++|+++++++|+++++.|||+++|++++.
T Consensus 60 ~~~~p~l--~i~~tavRVPv~~~h~~~~~~~~~~~~~~eev~~~l~~~~~ 107 (162)
T d1b7go2 60 NSVIRNL--DIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPR 107 (162)
T ss_dssp HTTSTTC--EEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTCTT
T ss_pred eccCCCc--eEEEEEEEcCCCcceEEEEEEEECCcCCHHHHHHHHHhCCC
Confidence 9999999 79999999999999999999999999999999999999874
|
| >d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=2.7e-20 Score=174.35 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=97.2
Q ss_pred CcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHH---------------------
Q 014890 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDL--------------------- 276 (416)
Q Consensus 219 SCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~--------------------- 276 (416)
||||.+|+..||+||++| ||+++.++||||+||. ++.+++.....
T Consensus 1 NCst~~l~~aL~pL~~~~-------------~i~rv~vsTYQAvSGaG~~~v~EL~~Q~~~l~~~~~~~~~~~~~~~~~~ 67 (221)
T d1t4ba2 1 NCTVSLMLMSLGGLFAND-------------LVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDI 67 (221)
T ss_dssp CHHHHHHHHHHHHHHHTT-------------CEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHTHHHHTCTTCCHHHH
T ss_pred CcHHHHHHHHHHHHHHHh-------------CceEEEEEhhhhhhhhcHHHHHHHHHHHHhhhccccccccCchhhccch
Confidence 799999999999999999 9999999999999999 67776432211
Q ss_pred ----------------HhhhccccccccCC-----CChHHHHHHHc---------cc-ccCCeeeEEEeeCcccceEEEE
Q 014890 277 ----------------RRARAAALNIVPTS-----TGAAKAVALVL---------PA-LKGKLNGIALRVPTPNVSVVDL 325 (416)
Q Consensus 277 ----------------rr~Raaa~NIIPt~-----tGaakav~kVl---------Pe-L~gkl~g~avRVPt~~vs~vdl 325 (416)
...+.+|+|+||+. .|+++++.|++ |+ | +++++||||||.++|.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~f~~~iAfNvIP~ig~~~e~G~t~EE~K~~~EtrKIL~~~~~i--~VsaTcVRVPV~~gHsesv 145 (221)
T d1t4ba2 68 ERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVI--PVDGLCVRVGALRCHSQAF 145 (221)
T ss_dssp HHHHHHHHHHTCSCCTTTSSCCTTCEESCCSCBCTTSCBHHHHHHHHHHHHHHTCSSCC--CEEEECCEESCSSEEEEEE
T ss_pred hhhhhhhcccccCCccccccccccccccCCccccccceechhHHHHHHHHhhhcccccc--ceeeEEeeeehhccchhee
Confidence 24567999999987 58888887654 44 4 5999999999999999999
Q ss_pred EEEEccCCCHHHHHHHHHhcc
Q 014890 326 VVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 326 ~v~l~k~vs~eeV~~a~~~aa 346 (416)
+++|+++++.||++++|.+++
T Consensus 146 ~ve~~~~i~~~ev~~~L~~~~ 166 (221)
T d1t4ba2 146 TIKLKKDVSIPTVEELLAAHN 166 (221)
T ss_dssp EEEESSCCCHHHHHHHHHHHC
T ss_pred eeehhhccchHHHHHHHhhcc
Confidence 999999999999999998764
|
| >d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=99.81 E-value=2.4e-20 Score=174.83 Aligned_cols=116 Identities=12% Similarity=0.109 Sum_probs=98.2
Q ss_pred CcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHH---------------------
Q 014890 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDL--------------------- 276 (416)
Q Consensus 219 SCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~--------------------- 276 (416)
||||.+|+++|++||++| ||+++.+|||||+||. .+.+++.....
T Consensus 1 NCsT~~l~~aL~pL~~~~-------------~i~rv~vsTYQAvSGaG~~gv~eL~~Q~~~~~~~~~~~~~~~~~~~~~~ 67 (222)
T d1mb4a2 1 NCTVSLMLMALGGLYERG-------------LVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANPASSILDI 67 (222)
T ss_dssp CHHHHHHHHHHHHHHHTT-------------CEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHH
T ss_pred CcHHHHHHHHHHHHHHHh-------------CeeEEEEeehhhhhhhcHHHHHHHHHHHHhhhccchhhhcCcchhhccc
Confidence 799999999999999999 9999999999999999 66665432111
Q ss_pred ----------------HhhhccccccccCC-----CChHHHHHHHc---------ccccCCeeeEEEeeCcccceEEEEE
Q 014890 277 ----------------RRARAAALNIVPTS-----TGAAKAVALVL---------PALKGKLNGIALRVPTPNVSVVDLV 326 (416)
Q Consensus 277 ----------------rr~Raaa~NIIPt~-----tGaakav~kVl---------PeL~gkl~g~avRVPt~~vs~vdl~ 326 (416)
..++.+|+|+||+. .|+++++.|+. |+-.-+++++||||||.++|.+.++
T Consensus 68 ~~~~~~~~~~~~~~~~~f~~~iAfNviP~i~~~~~~G~t~EE~K~~~EtrKIL~~~d~~i~VsaTCVRVPV~~gHsesV~ 147 (222)
T d1mb4a2 68 DKKVAETMRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRCHSQALT 147 (222)
T ss_dssp HHHHHHHHHSTTSSCTTTSSCCTBSEESCCSCBCSSSCBHHHHHHHHHHHHHHTCTTSCCCEECCCCEESBSSEEEEEEE
T ss_pred hhhhhhhcccCCCccccccccchhcccccccccccCCcccchHHHHHHHHHHhcCCCcccchhHHHHhhhhhhheeeeEE
Confidence 13567999999987 59999887654 4422368999999999999999999
Q ss_pred EEEccCCCHHHHHHHHHhccc
Q 014890 327 VQVSKKTFAEEVNAAFRESAD 347 (416)
Q Consensus 327 v~l~k~vs~eeV~~a~~~aa~ 347 (416)
++|+++++.+|++++|++++.
T Consensus 148 ve~~~~is~~e~~~~L~~~~~ 168 (222)
T d1mb4a2 148 IKLKQNIPLDEIEEMIATHND 168 (222)
T ss_dssp EEESSCCCHHHHHHHHHTSCS
T ss_pred EEeeecccHHHHHHHHhcccc
Confidence 999999999999999998753
|
| >d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.77 E-value=6.6e-19 Score=161.45 Aligned_cols=114 Identities=14% Similarity=0.149 Sum_probs=96.7
Q ss_pred cchh-hhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHHH---h---------hhccccc
Q 014890 220 CTTN-CLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDLR---R---------ARAAALN 285 (416)
Q Consensus 220 CTTn-~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~r---r---------~Raaa~N 285 (416)
|+|. +|+++|++||+.| ||+++.+|||||+||. ++.+|+.+...+ . .+.+|+|
T Consensus 1 Cs~~~qL~~aL~PL~~~~-------------~i~rv~vsTyQavSGaG~~gv~eL~~Qt~~ll~~~~~~~~~fp~~iafN 67 (190)
T d2hjsa2 1 CAVAAELCEVLAPLLATL-------------DCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFN 67 (190)
T ss_dssp CHHHHHHHHHHHHHTTTC-------------CEEEEEEEEEECGGGGCHHHHHHHHHHHHHHHTTCCCCCSSSSSCCTTC
T ss_pred ChhHHHHHHHHHHHHHhh-------------CceEEEEEEEechhhcCHHHHHHHHHHHHHHhccccccccccchhhccc
Confidence 9986 4999999999999 9999999999999999 788886543222 1 3569999
Q ss_pred cccCC-----CChHHHHHHHc-------ccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcc
Q 014890 286 IVPTS-----TGAAKAVALVL-------PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 286 IIPt~-----tGaakav~kVl-------PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa 346 (416)
+||+. +|+++++.|++ ..-..+++.+|+||||..+|.+.++++|+++++.||+.++|++++
T Consensus 68 viP~ig~~~~~g~t~EE~K~~~Et~KIL~~~~l~vs~TcvRVPV~~gHs~sv~ve~~~~i~~~e~~~~l~~~~ 140 (190)
T d2hjsa2 68 LLAQVGAVDAEGHSAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATK 140 (190)
T ss_dssp CBSSSSCBCTTSCBHHHHHHHHHHHHHTGGGBCCEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHST
T ss_pred cccccccccccccchhhhhhhhhhhhhccCccccceeeeEEeehhhcchhheeeeeecCccHHHHHHHHHhCC
Confidence 99987 48888887654 222236999999999999999999999999999999999999875
|
| >d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.72 E-value=3.5e-18 Score=157.66 Aligned_cols=113 Identities=18% Similarity=0.286 Sum_probs=96.0
Q ss_pred cchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHHH---------------------
Q 014890 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDLR--------------------- 277 (416)
Q Consensus 220 CTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~r--------------------- 277 (416)
|||+.|++.|++||++| ||+++.+|||||+||. ++.++......+
T Consensus 1 Cst~~l~~aL~pL~~~~-------------gi~~v~vsTyQAvSGaG~~gv~eL~~q~~~~l~~~~~~~~~~~~~~p~~~ 67 (202)
T d2gz1a2 1 CSTIQMMVALEPVRQKW-------------GLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHAEILPSGG 67 (202)
T ss_dssp HHHHHHHHHHHHHHHHH-------------CCCEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHCCCGGGCCCSSSSCTT
T ss_pred CcHHHHHHHHHHHHHhc-------------CceEEEEEehHhHHhhhHHHHHHHHHHHHHHhcccccccccchhcccccc
Confidence 99999999999999999 9999999999999999 777764322111
Q ss_pred --hhhccccccccCC-----CChHHHHHHH-------c--ccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHH
Q 014890 278 --RARAAALNIVPTS-----TGAAKAVALV-------L--PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAA 341 (416)
Q Consensus 278 --r~Raaa~NIIPt~-----tGaakav~kV-------l--PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a 341 (416)
..+.+|+|+||+. .|+++++.|+ | |+| +++++|+||||.++|...++++|+++++.+|++++
T Consensus 68 ~~~~~~iafN~iP~i~~~~~~g~t~EE~k~~~E~~kIl~~~~~--~vsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~ 145 (202)
T d2gz1a2 68 DKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETKKIMEDDSI--AVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAA 145 (202)
T ss_dssp SSCCCCCTTCCBCCCSCBCTTSSBHHHHHHHHHHHHHTTCTTS--EEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHH
T ss_pred cccceehhhhhhhcccchhcccchhhhhHHhhhhcceeccccc--CcccceEEEEEeecceEEEEEeeehhccHHHHHHH
Confidence 2356999999976 5888877654 4 444 59999999999999999999999999999999999
Q ss_pred HHhccc
Q 014890 342 FRESAD 347 (416)
Q Consensus 342 ~~~aa~ 347 (416)
|.+++.
T Consensus 146 l~~~~g 151 (202)
T d2gz1a2 146 IAAFPG 151 (202)
T ss_dssp HHTSTT
T ss_pred HhcCCC
Confidence 998763
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.65 E-value=1.1e-16 Score=139.59 Aligned_cols=136 Identities=17% Similarity=0.221 Sum_probs=107.5
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+|||||.| +|-+|+.++|.|.+++.+.++++.+-. . + ..|+.+.+.++.+.+..
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s-------------~----------~-~~Gk~i~~~~~~~~~~~- 56 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLAS-------------A----------E-SAGQRMGFAESSLRVGD- 56 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEEC-------------T----------T-TTTCEEEETTEEEECEE-
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEee-------------c----------c-cCCcceeeccccchhcc-
Confidence 47999999 899999999999776435567644421 1 1 35667778888777643
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC---CCCCCeEEeecCccCCCC--CCCeEecCCcc
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG---KGDIPTYVVGVNADAYKP--DEPIISNASCT 221 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps---kd~~ptvV~gVN~~~y~~--~~~IISnaSCT 221 (416)
++...|. ++|+||.|+|...+.++++..+++|+ +||+.++ .++++.+++++|.+.+.. ..+||+||+|+
T Consensus 57 --~~~~~~~--~~d~vf~a~p~~~s~~~~~~~~~~g~--~VID~Ss~fR~~~~~~~vpevn~~~l~~~~~~~iIANPgC~ 130 (144)
T d2hjsa1 57 --VDSFDFS--SVGLAFFAAAAEVSRAHAERARAAGC--SVIDLSGALEPSVAPPVMVSVNAERLASQAAPFLLSSPAAL 130 (144)
T ss_dssp --GGGCCGG--GCSEEEECSCHHHHHHHHHHHHHTTC--EEEETTCTTTTTTSCBCCHHHHGGGGGGSCSSCEEECCCHH
T ss_pred --chhhhhc--cceEEEecCCcchhhhhccccccCCc--eEEeechhhcccccccccccccHHHHHhccCCCEEccCcHH
Confidence 3344453 79999999999999999999999999 7898876 245677899999998763 35799999999
Q ss_pred hhhhHHHHHHHHH
Q 014890 222 TNCLAPFVKVLDQ 234 (416)
Q Consensus 222 Tn~Lap~lkvL~~ 234 (416)
|.++...|++||+
T Consensus 131 t~~~ll~L~~~h~ 143 (144)
T d2hjsa1 131 NAVLLGELLIKHY 143 (144)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhcc
Confidence 9999999999985
|
| >d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.64 E-value=3.2e-16 Score=140.13 Aligned_cols=102 Identities=19% Similarity=0.260 Sum_probs=88.8
Q ss_pred CcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCC--ChHHH
Q 014890 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTST--GAAKA 296 (416)
Q Consensus 219 SCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~t--Gaaka 296 (416)
||||++|+++|++|++.| |+.++.+..-.++.+. ..|+.++|++|... |+.+.
T Consensus 1 SC~T~~l~~~L~pL~~~~-------------~~~rvv~vr~a~dp~~------------~~~~i~~nviP~~~~~~~~~~ 55 (162)
T d2czca1 1 SCNTTGLVRTLSAIREYA-------------DYVYAVMIRRAADPND------------TKRGPINAIKPTVEVPSHHGP 55 (162)
T ss_dssp CHHHHHHHHHHHHHGGGE-------------EEEEEEEEEESSCTTC------------CSCCCSSCCEECCSSSCTHHH
T ss_pred CChHHHHHHHHHHHHHHh-------------CceEEEEECcccCccc------------ccCCcccccccCCCCCCccch
Confidence 899999999999999999 9999988654433222 23678999999974 77787
Q ss_pred HHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhccc
Q 014890 297 VALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 347 (416)
Q Consensus 297 v~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~ 347 (416)
..+.+|+| +++++|+||||..+|++.++++|+++++.||++++|++++.
T Consensus 56 d~~~v~~i--~v~~t~vRVPv~~gH~~~v~ve~~~~~~~~ev~~~l~~~pg 104 (162)
T d2czca1 56 DVQTVIPI--NIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTR 104 (162)
T ss_dssp HHTTTSCC--CEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTSTT
T ss_pred hhcccCCe--EEEEEEEEeeeeeeeEEEEEEEECCCCCHHHHHHHHHHCCC
Confidence 88888988 69999999999999999999999999999999999999763
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.63 E-value=2.8e-16 Score=137.92 Aligned_cols=147 Identities=19% Similarity=0.260 Sum_probs=113.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
.||||.| +|-+|+.++|.|.+++ ++++-+. ++ .|. + ..|..+...++.......
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~---fp~~~l~----------~~--~s~--------~-s~G~~~~~~~~~~~~~~~- 56 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEEST---LPIDKIR----------YL--ASA--------R-SAGKSLKFKDQDITIEET- 56 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCC---SCEEEEE----------EE--ECG--------G-GTTCEEEETTEEEEEEEC-
T ss_pred CEEEEECCCcHHHHHHHHHHHcCC---CCceEEE----------Ee--ccc--------c-cccccccccCCccccccc-
Confidence 6999999 8999999999998774 4432232 11 110 1 345666677766555432
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCCCCCeEecCCcchh
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKPDEPIISNASCTTN 223 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~~~~IISnaSCTTn 223 (416)
.+ +...++|+|+.|+|...+.+.++..++.|+ .||+.++ +++.|.++|++|.+.++...++|+||+|+|+
T Consensus 57 --~~--~~~~~~d~~f~~~~~~~s~~~~~~~~~~~~--~VIDlSsdfR~~~~~~~~~pe~n~~~~~~~~~iIAnPgC~tt 130 (154)
T d2gz1a1 57 --TE--TAFEGVDIALFSAGSSTSAKYAPYAVKAGV--VVVDNTSYFRQNPDVPLVVPEVNAHALDAHNGIIACPNAAWN 130 (154)
T ss_dssp --CT--TTTTTCSEEEECSCHHHHHHHHHHHHHTTC--EEEECSSTTTTCTTSCBCCHHHHGGGGGGCCSEEECCCTHHH
T ss_pred --ch--hhhhhhhhhhhccCccchhhHHhhhccccc--eehhcChhhhccCCcccccchhhHHHhcCcCceEECCCCHHH
Confidence 22 233478999999999999999999999998 7898887 3468999999999988766789999999999
Q ss_pred hhHHHHHHHHHHhhhhccccccccccceeEEEEEeec
Q 014890 224 CLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTH 260 (416)
Q Consensus 224 ~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiH 260 (416)
+|.+ ++||++++ .|+....+|||
T Consensus 131 ~i~~-l~PL~~~~-------------lik~~~~~~~~ 153 (154)
T d2gz1a1 131 SVQI-AETLHERG-------------LVRPTAELKFE 153 (154)
T ss_dssp HHHH-HHHHHHTT-------------CCSCCSSCCSC
T ss_pred HHHH-HHHHHHhc-------------CCCccceeeec
Confidence 9987 69999999 89887777765
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=99.49 E-value=8.9e-15 Score=129.40 Aligned_cols=142 Identities=20% Similarity=0.216 Sum_probs=95.1
Q ss_pred ceeEEEEccChhHHHH-HHHHHhCCCCCceEEEEecCC-ChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 68 KLKVAINGFGRIGRNF-LRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 68 ~ikVaINGfGrIGR~v-lr~l~~~~~~~~~vVaINd~~-~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
++||||+|.|.||+.+ ++++... +.+|++++-+.. ...-+.+--+ +|. .+. .++.. .+
T Consensus 4 kirvaIIGaG~ig~~~~~~~l~~~--~~~el~avas~~~~~~~~~~a~~----~~i---~~~--------~~~~d-~l-- 63 (157)
T d1nvmb1 4 KLKVAIIGSGNIGTDLMIKVLRNA--KYLEMGAMVGIDAASDGLARAQR----MGV---TTT--------YAGVE-GL-- 63 (157)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHC--SSEEEEEEECSCTTCHHHHHHHH----TTC---CEE--------SSHHH-HH--
T ss_pred CcEEEEEcCcHHHHHHHHHHHhhC--CcceEEEEEecchhccchhhhhh----cCC---ccc--------cccee-ee--
Confidence 5899999999999864 5665444 459999997641 1111111111 111 000 00000 00
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCH--hhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCC--CCeEecCCcc
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDR--EGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD--EPIISNASCT 221 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~--~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~--~~IISnaSCT 221 (416)
..+| ...++|+|++||...... +++.+.+++|+ ++|+..+..+.|++||+||.+++... .++|+|++|+
T Consensus 64 ~~~~-----~~~~iDiVf~ATpag~h~~~~~~~~aa~~G~--~VID~s~a~~vplvVPevN~~~~~~~~n~nlitc~~~~ 136 (157)
T d1nvmb1 64 IKLP-----EFADIDFVFDATSASAHVQNEALLRQAKPGI--RLIDLTPAAIGPYCVPVVNLEEHLGKLNVNMVTYAGNL 136 (157)
T ss_dssp HHSG-----GGGGEEEEEECSCHHHHHHHHHHHHHHCTTC--EEEECSTTCSSCBCCHHHHTTTTTTCSEEECCCTCHHH
T ss_pred eecc-----cccccCEEEEcCCchhHHHhHHHHHHHHcCC--EEEEccccccceEEccCcCHHHHhcCCCCCeEecCchH
Confidence 0111 124799999999876544 45667778888 88988876679999999999976654 3799999999
Q ss_pred hhhhHHHHHHHHHHh
Q 014890 222 TNCLAPFVKVLDQKF 236 (416)
Q Consensus 222 Tn~Lap~lkvL~~~f 236 (416)
|..|+-.|+++++..
T Consensus 137 tip~~~al~~~~~~~ 151 (157)
T d1nvmb1 137 DIMTSAALATAERMA 151 (157)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999865
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=99.31 E-value=2.6e-14 Score=125.63 Aligned_cols=131 Identities=16% Similarity=0.112 Sum_probs=91.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCC-CCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKD-SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~-~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|||||.| +|-+|+.++|.|++.++ +.++++.+... + +.+..+.+.++...+...
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~-------------~-----------~~gk~~~~~~~~~~~~~~ 56 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTS-------------Q-----------IGVPAPNFGKDAGMLHDA 56 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESS-------------C-----------CSSBCCCSSSCCCBCEET
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccc-------------c-----------ccccccccCCcceeeecc
Confidence 5899999 99999999998876432 33555444321 0 112222233333333332
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCC-----CCCe---
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP-----DEPI--- 214 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~-----~~~I--- 214 (416)
.++.. | .++|+||.|++...+.+++++.+++|.|.+|||.++ ++++|+++|+||.+.++. ..+.
T Consensus 57 ~~~~~--~--~~~DvvF~alp~~~s~~~~~~l~~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~k~~~~~ 132 (147)
T d1mb4a1 57 FDIES--L--KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGTKTFVGG 132 (147)
T ss_dssp TCHHH--H--TTCSEEEECSCHHHHHHHHHHHHHTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cchhh--h--ccccEEEEecCchHHHHHhHHHHHcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCCcceeee
Confidence 22222 2 378999999999999999999999998878998887 457999999999997553 1334
Q ss_pred EecCCcchhhhHH
Q 014890 215 ISNASCTTNCLAP 227 (416)
Q Consensus 215 ISnaSCTTn~Lap 227 (416)
+++|+|+|.+|+.
T Consensus 133 ~~~p~~~~~~~~~ 145 (147)
T d1mb4a1 133 AAEPLRRTLRIIL 145 (147)
T ss_dssp THHHHHHHHHHHH
T ss_pred ccCcCHhHhHHHh
Confidence 4999999998864
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=99.13 E-value=1.4e-11 Score=109.41 Aligned_cols=146 Identities=19% Similarity=0.206 Sum_probs=90.9
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|+||||.| +|-+|+.++|.|..++ +|+|..+.-.......-..+ ...|..+.+.. ......
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP--~~ei~~l~~~s~~~~aGk~~--~~~~~~~~~~~-----------~~~~~~--- 62 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHP--HMTITALTVSAQSNDAGKLI--SDLHPQLKGIV-----------DLPLQP--- 62 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCT--TEEEEEEEEETTCTTTTCBH--HHHCGGGTTTC-----------CCBEEE---
T ss_pred CcEEEEECcccHHHHHHHHHHHhCC--CCceEeeEeecccccccccc--ccccccccccc-----------cccccc---
Confidence 48999999 9999999999999875 49988774210000000000 11111111100 001111
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCC---CCC-----------------CeEEe---ec
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK---GDI-----------------PTYVV---GV 203 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapsk---d~~-----------------ptvV~---gV 203 (416)
..+..+...++|+||.|++...+.+.+++.++.|. ++|+.++. ++. .-.|| ++
T Consensus 63 --~~~~~~~~~~~dvvf~alp~~~s~~~~~~~~~~~~--~vIDlSadfRl~~~~~~~~~y~~~~~~~~~~~~~vYglpE~ 138 (179)
T d2g17a1 63 --MSDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGC--VVFDLSGAFRVNDRAFYEKYYGFTHQYPELLEQAVYGLAEW 138 (179)
T ss_dssp --ESCGGGTCTTCCEEEECSCHHHHHHHHHHHHHTTC--EEEECSSTTSSSCHHHHHHHHCSCCSCHHHHHHCEECCGGG
T ss_pred --chhhhhhhcccceeeccccchhHHHHhhhhhhcCc--eeecccccccccccccccccccccccccccccccccCchhh
Confidence 11222334589999999999999999999999998 67887762 111 12344 45
Q ss_pred CccCCCCCCCeEecCCcchhhhHHHHHHHHHHh
Q 014890 204 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 204 N~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f 236 (416)
|.++++ ..++|+||+|.++++...|++..-++
T Consensus 139 ~r~~i~-~~~~IAnPGCyaTa~~laL~~pl~~~ 170 (179)
T d2g17a1 139 NVDKLN-TANLIAVPGLLKGAAAQAVQCANIRF 170 (179)
T ss_dssp CHHHHT-TCSEEECCCTTTTTHHHHHHHHHHHH
T ss_pred hHHHHh-cCCEEEcCCchHHHHHHHHHhHHHHc
Confidence 555554 35699999999999888887555555
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=99.11 E-value=3.4e-12 Score=114.42 Aligned_cols=152 Identities=11% Similarity=0.124 Sum_probs=95.1
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecC--CChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT--GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~--~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
.++||||.| +|-+|+.++|.|.+++ .++++.+-.. .+- .+..... ... +.....
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP--~~ei~~l~S~~~aG~-~~~~~~~--~~~------------------~~~~~~ 60 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHP--QFRIKVMTADRKAGE-QFGSVFP--HLI------------------TQDLPN 60 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCS--SEEEEEEECSTTTTS-CHHHHCG--GGT------------------TSCCCC
T ss_pred CccEEEEECcccHHHHHHHHHHHhCC--CceEEEEeccccCCC-ccccccc--ccc------------------cccccc
Confidence 479999999 9999999999998875 5998888531 111 1111110 000 000000
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC---CC-CCCeE------------------Ee
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG---KG-DIPTY------------------VV 201 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps---kd-~~ptv------------------V~ 201 (416)
. ....+..| .++|+||.|++...+.+.++...+.|. +|+.... .+ +++.. ++
T Consensus 61 ~--~~~~~~~~--~~~Dvvf~alp~~~s~~~~~~l~~~~~--~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vyglp 134 (183)
T d2cvoa1 61 L--VAVKDADF--SNVDAVFCCLPHGTTQEIIKGLPQELK--IVDLSADFRLRDINEYAEWYGHSHRAPELQQEAVYGLT 134 (183)
T ss_dssp C--BCGGGCCG--GGCSEEEECCSSSHHHHHHHTSCSSCE--EEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCH
T ss_pred c--hhhhhhhh--cccceeeeccccchHHHHHHHHHhcCc--ccccchhhhccccchheeeccccccchhhhccccccCc
Confidence 0 01111222 489999999999999999876555443 4444332 11 12222 23
Q ss_pred ecCccCCCCCCCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecc
Q 014890 202 GVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHS 261 (416)
Q Consensus 202 gVN~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa 261 (416)
++|.+.+. ..++|+||+|.|+++...|+||+..+ |+.+..-.++|+
T Consensus 135 E~~r~~i~-~a~~IANPgC~~t~~~laL~PL~~~~-------------gli~~~~i~~~~ 180 (183)
T d2cvoa1 135 EVLRNEIR-NARLVANPGLVKGASGQAVQNLNLMM-------------GLPENTGLQYQP 180 (183)
T ss_dssp HHHHHHHH-HCSEEECCCTTTTTHHHHHHHHHHHH-------------TSCTTTTCCCCC
T ss_pred hHHHHHHh-hCCEeeCCCcHHHHHHHhhhhHHHhc-------------CCCcccceeeec
Confidence 34444442 24699999999999999999999999 887765555554
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=4.6e-12 Score=110.68 Aligned_cols=113 Identities=18% Similarity=0.169 Sum_probs=77.0
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCC-CCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRK-DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~-~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
.||||.| +|-+|+.+++.|++++ -+..++++.... . ..+..+.+.++.+.+...
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss-------------~-----------s~g~~~~~~~~~~~~~~~ 57 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS-------------Q-----------LGQAAPSFGGTTGTLQDA 57 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-------------S-----------TTSBCCGGGTCCCBCEET
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecc-------------c-----------cccccccccCCceeeecc
Confidence 3999999 9999999998776643 233455444321 0 111111122222222221
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYK 209 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~ 209 (416)
.+.. .| .++|+||.|+|...++++++.+.++|.+.+|||.++ ++++|++||+||.+.++
T Consensus 58 ~~~~--~~--~~~DivF~a~~~~~s~~~~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~ 120 (146)
T d1t4ba1 58 FDLE--AL--KALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT 120 (146)
T ss_dssp TCHH--HH--HTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHH
T ss_pred cchh--hh--hcCcEEEEecCchHHHHhhHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHH
Confidence 1211 22 489999999999999999999999999888999987 45799999999988664
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=99.06 E-value=2.1e-11 Score=109.52 Aligned_cols=136 Identities=12% Similarity=0.233 Sum_probs=89.4
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec--CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND--TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd--~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
|+||||.| +|-+|+.++|.|...+ .++|+.+-. ..+- .+ +..| +.. .+.. ..
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP--~~ei~~l~s~~~aG~-~i------~~~~---p~~----------~~~~---~~ 55 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHP--EAKITYLSSRTYAGK-KL------EEIF---PST----------LENS---IL 55 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCT--TEEEEEEECSTTTTS-BH------HHHC---GGG----------CCCC---BC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCC--CceEEEeeccccCCC-cc------cccC---chh----------hccc---cc
Confidence 48999999 9999999999998765 499877742 1110 00 0000 000 0000 01
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCC---CC--------------CCe--E---Eee
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK---GD--------------IPT--Y---VVG 202 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapsk---d~--------------~pt--v---V~g 202 (416)
...+++++ ..++|+|+.|++...+.+.+++. .|+ .||+.++. ++ .++ . +++
T Consensus 56 ~~~~~~~~---~~~~dvvf~a~p~~~s~~~~~~~--~~~--~VIDlSadfRl~~~~~y~~~Y~~~h~~~~~~~~~YGlpE 128 (176)
T d1vkna1 56 SEFDPEKV---SKNCDVLFTALPAGASYDLVREL--KGV--KIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPE 128 (176)
T ss_dssp BCCCHHHH---HHHCSEEEECCSTTHHHHHHTTC--CSC--EEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHH
T ss_pred cccCHhHh---ccccceEEEccccHHHHHHHHhh--ccc--eEEecCccccccchhhHHHhhccccccccccceeecCcH
Confidence 11222222 23789999999998887776642 455 68988872 11 122 3 466
Q ss_pred cCccCCCCCCCeEecCCcchhhhHHHHHHHHHHh
Q 014890 203 VNADAYKPDEPIISNASCTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 203 VN~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f 236 (416)
+|.+.+. ..++||||+|+++++...|++|++.|
T Consensus 129 ~~r~~i~-~~~~IanPgC~~t~~~laL~PL~~~~ 161 (176)
T d1vkna1 129 LHREEIK-NAQVVGNPGLVKGASGQAVQNMNIMF 161 (176)
T ss_dssp HHHHHHT-TCSEEECCCTTTTTHHHHHHHHHHHT
T ss_pred HhHHHHh-cCCEEEccCcHHHHHHHHHhhHHHhc
Confidence 8877775 35799999999999999999999999
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=98.18 E-value=2e-06 Score=74.65 Aligned_cols=85 Identities=18% Similarity=0.218 Sum_probs=59.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||+|+|.|||.+++.+.+.+ ++++|+|.|... +. ...+ .+ ....
T Consensus 3 kirvgiiG~G~ig~~~~~~l~~~~--~~elvav~~~~~-~~-------~~~~-----~~-----------------~~~~ 50 (170)
T d1f06a1 3 NIRVAIVGYGNLGRSVEKLIAKQP--DMDLVGIFSRRA-TL-------DTKT-----PV-----------------FDVA 50 (170)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCS--SEEEEEEEESSS-CC-------SSSS-----CE-----------------EEGG
T ss_pred cceEEEECChHHHHHHHHHHHhCC--CcEEEEEEeccc-cc-------cccc-----cc-----------------ccch
Confidence 689999999999999999998754 599999998521 10 0000 00 0111
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
+...+ ..++|+|+.||+.+...+.+...+++|. .||.
T Consensus 51 ~~~~~---~~~~D~Vvi~tp~~~h~~~a~~aL~aG~-~vv~ 87 (170)
T d1f06a1 51 DVDKH---ADDVDVLFLCMGSATDIPEQAPKFAQFA-CTVD 87 (170)
T ss_dssp GGGGT---TTTCSEEEECSCTTTHHHHHHHHHTTTS-EEEC
T ss_pred hhhhh---ccccceEEEeCCCcccHHHHHHHHHCCC-cEEE
Confidence 11111 1368999999999999999999999997 3443
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.54 E-value=5.4e-05 Score=65.63 Aligned_cols=97 Identities=21% Similarity=0.199 Sum_probs=65.2
Q ss_pred ceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||+|+|.+|+. .++++...+ +.++|++|-|. +.+....+.+ .||. .. ++
T Consensus 3 kirigiIG~G~~g~~~h~~~l~~~~-~~~~i~~v~d~-~~~~~~~~~~---~~~~----~~---------------~~-- 56 (181)
T d1zh8a1 3 KIRLGIVGCGIAARELHLPALKNLS-HLFEITAVTSR-TRSHAEEFAK---MVGN----PA---------------VF-- 56 (181)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTT-TTEEEEEEECS-SHHHHHHHHH---HHSS----CE---------------EE--
T ss_pred CcEEEEEcCCHHHHHHHHHHHHhCC-CCeEEEEEEec-cHhhhhhhhc---cccc----cc---------------ee--
Confidence 689999999999987 477776643 34899999986 4444433221 1110 01 11
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+-||......+.+...+++| |.|++--|-
T Consensus 57 ~~~~el-l~~~~id~v~I~tp~~~h~~~~~~al~~g-k~V~~EKPl 100 (181)
T d1zh8a1 57 DSYEEL-LESGLVDAVDLTLPVELNLPFIEKALRKG-VHVICEKPI 100 (181)
T ss_dssp SCHHHH-HHSSCCSEEEECCCGGGHHHHHHHHHHTT-CEEEEESSS
T ss_pred eeeecc-ccccccceeeccccccccccccccccccc-hhhhcCCCC
Confidence 111111 11236899999999999999999999999 688886664
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.48 E-value=0.0001 Score=63.64 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=66.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||.|+|++|+..++++...+ +++|+||-|. +.+.+..+.+ .++..+ ..+ .++
T Consensus 1 kiki~iIG~G~~g~~~~~~l~~~~--~~~i~ai~d~-~~~~~~~~~~---~~~~~~-~~~-------~~~---------- 56 (184)
T d1ydwa1 1 QIRIGVMGCADIARKVSRAIHLAP--NATISGVASR-SLEKAKAFAT---ANNYPE-STK-------IHG---------- 56 (184)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCT--TEEEEEEECS-SHHHHHHHHH---HTTCCT-TCE-------EES----------
T ss_pred CeEEEEEcCCHHHHHHHHHHHhCC--CCEEEEEEeC-Cccccccchh---cccccc-cee-------ecC----------
Confidence 489999999999999999987754 4999999986 4444333221 121100 111 111
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
+.+++ -.+.++|+|+-||+.....+.+...+++| +.|++--|-
T Consensus 57 ~~~~l-l~~~~iD~v~I~tp~~~h~~~~~~~l~~g-~~v~~EKP~ 99 (184)
T d1ydwa1 57 SYESL-LEDPEIDALYVPLPTSLHVEWAIKAAEKG-KHILLEKPV 99 (184)
T ss_dssp SHHHH-HHCTTCCEEEECCCGGGHHHHHHHHHTTT-CEEEECSSC
T ss_pred cHHHh-hhccccceeeecccchhhcchhhhhhhcc-ceeeccccc
Confidence 11111 01236899999999999999999999999 578886664
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=97.45 E-value=7.8e-05 Score=64.89 Aligned_cols=96 Identities=22% Similarity=0.226 Sum_probs=59.7
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+|||+|+| .||+||.+++++.+.+ ++++++.-+..+.+.. -.| .|.+.+... -+ +.+.
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~--~~~lv~~~~~~~~~~~----g~d--~~~~~~~~~---------~~--~~~~-- 62 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALE--GVQLGAALEREGSSLL----GSD--AGELAGAGK---------TG--VTVQ-- 62 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHST--TEECCCEECCTTCTTC----SCC--TTCSSSSSC---------CS--CCEE--
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC--CCEEEEEEecccchhc----cch--hhhhhcccc---------CC--ceee--
Confidence 58999999 6999999999998865 4999888764222111 112 122221100 01 1221
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
.+++.+ ....|++||-|-.....+.++..++.|.+ +||
T Consensus 63 ~~~~~~---~~~~DViIDFs~p~~~~~~~~~a~~~~~~-~Vi 100 (162)
T d1diha1 63 SSLDAV---KDDFDVFIDFTRPEGTLNHLAFCRQHGKG-MVI 100 (162)
T ss_dssp SCSTTT---TTSCSEEEECSCHHHHHHHHHHHHHTTCE-EEE
T ss_pred ccHHHH---hcccceEEEeccHHHHHHHHHHHHhccce-eEE
Confidence 233332 24789999988887777788888888874 344
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.00043 Score=58.62 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=61.7
Q ss_pred ceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+|||||.|+|.+|+. .++++...+ ++++++|-|. +.+....+.+ .||. . . +
T Consensus 1 Kiri~iIG~G~~g~~~~~~~l~~~~--~~~i~~v~d~-~~~~~~~~~~---~~~~-----~-~------~---------- 52 (164)
T d1tlta1 1 KLRIGVVGLGGIAQKAWLPVLAAAS--DWTLQGAWSP-TRAKALPICE---SWRI-----P-Y------A---------- 52 (164)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCS--SEEEEEEECS-SCTTHHHHHH---HHTC-----C-B------C----------
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCC--CcEEEEEEec-hhHhhhhhhh---cccc-----c-c------c----------
Confidence 589999999999986 567666553 4999999885 2222222221 1110 0 0 0
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..++|+|+-||......+.+...+++| |.|++.-|-
T Consensus 53 ~~~~~l---~~~~D~V~I~tp~~~h~~~~~~al~~g-k~V~~EKPl 94 (164)
T d1tlta1 53 DSLSSL---AASCDAVFVHSSTASHFDVVSTLLNAG-VHVCVDKPL 94 (164)
T ss_dssp SSHHHH---HTTCSEEEECSCTTHHHHHHHHHHHTT-CEEEEESSS
T ss_pred ccchhh---hhhcccccccccchhcccccccccccc-ceeeccccc
Confidence 001111 025799999999998899999999999 689887664
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.15 E-value=0.0007 Score=60.63 Aligned_cols=101 Identities=22% Similarity=0.190 Sum_probs=66.1
Q ss_pred cceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
.++||||.|+|.+|+. +++++... +.++|+||-|. +++.+..+.+ .||.-...+ ..
T Consensus 32 ~~iriaiIG~G~~~~~~~~~~~~~~--~~~~ivav~d~-~~~~a~~~~~---~~~i~~~~~---------------~~-- 88 (221)
T d1h6da1 32 RRFGYAIVGLGKYALNQILPGFAGC--QHSRIEALVSG-NAEKAKIVAA---EYGVDPRKI---------------YD-- 88 (221)
T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTC--SSEEEEEEECS-CHHHHHHHHH---HTTCCGGGE---------------EC--
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHhC--CCceEEEEecC-CHHHHHHHHH---hhccccccc---------------cc--
Confidence 4799999999999974 66665544 35999999986 5555544332 122100011 11
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
..|.+++ -.+.++|+|+-||......+.+...+++| |.|++--|-
T Consensus 89 ~~d~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~~g-k~v~~EKPl 133 (221)
T d1h6da1 89 YSNFDKI-AKDPKIDAVYIILPNSLHAEFAIRAFKAG-KHVMCEKPM 133 (221)
T ss_dssp SSSGGGG-GGCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSSC
T ss_pred cCchhhh-cccccceeeeeccchhhhhhHHHHhhhcc-hhhhcCCCc
Confidence 1122221 12237899999999999999999999999 578876553
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=96.90 E-value=0.001 Score=56.35 Aligned_cols=94 Identities=19% Similarity=0.254 Sum_probs=60.1
Q ss_pred ceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+|||||.|+|.+|+. .++++...+ +++++++.+ +++.+..+- ..|+.. . + .
T Consensus 1 tirvgiiG~G~~~~~~~~~~l~~~~--~~~~~~~d~--~~~~~~~~~---~~~~~~----~---------------~--~ 52 (167)
T d1xeaa1 1 SLKIAMIGLGDIAQKAYLPVLAQWP--DIELVLCTR--NPKVLGTLA---TRYRVS----A---------------T--C 52 (167)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTST--TEEEEEECS--CHHHHHHHH---HHTTCC----C---------------C--C
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhCC--CcEEEEEEC--CHHHHHHHH---Hhcccc----c---------------c--c
Confidence 379999999999976 566665543 488875543 444433322 112110 0 0 0
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++- +.++|+|+=||+...-.+.+...+++| |.|++--|-
T Consensus 53 ~~~~~ll--~~~iD~V~I~tp~~~H~~~~~~al~~g-k~V~~EKP~ 95 (167)
T d1xeaa1 53 TDYRDVL--QYGVDAVMIHAATDVHSTLAAFFLHLG-IPTFVDKPL 95 (167)
T ss_dssp SSTTGGG--GGCCSEEEECSCGGGHHHHHHHHHHTT-CCEEEESCS
T ss_pred ccHHHhc--ccccceecccccccccccccccccccc-cccccCCCC
Confidence 1222221 236899999999999999999999999 468886554
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.68 E-value=0.0031 Score=53.05 Aligned_cols=70 Identities=23% Similarity=0.222 Sum_probs=52.3
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
||+|+| +||.||.+++.+.+.+ ++++++.-|..+... ..
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~--~~~l~~~~d~~~~~~----------------~~---------------------- 40 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAAD--DLTLSAELDAGDPLS----------------LL---------------------- 40 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHST--TSEEEEEECTTCCTH----------------HH----------------------
T ss_pred CEEEECCCCHHHHHHHHHHHhCC--CCEEEEEEecCCchh----------------hh----------------------
Confidence 899999 7999999999988765 499988766422100 00
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCE
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKK 185 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkk 185 (416)
.+.+.|+|||-|-.....+.++..++.|.+-
T Consensus 41 ------~~~~~DvvIDFS~p~~~~~~~~~~~~~~~~~ 71 (135)
T d1yl7a1 41 ------TDGNTEVVIDFTHPDVVMGNLEFLIDNGIHA 71 (135)
T ss_dssp ------HTTTCSEEEECCCTTTHHHHHHHHHHTTCEE
T ss_pred ------ccccCCEEEEcccHHHHHHHHHHHHhcCCCE
Confidence 0125699999998888888888888899853
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=96.65 E-value=0.0013 Score=59.23 Aligned_cols=103 Identities=11% Similarity=0.163 Sum_probs=67.1
Q ss_pred cccceeEEEEccCh----hHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEE
Q 014890 65 AQAKLKVAINGFGR----IGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKV 140 (416)
Q Consensus 65 ~~m~ikVaINGfGr----IGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~ 140 (416)
+..++||||.|+|- +++.-+.++.... ++++||||-|. +.+....+.+ .||.-. .+ .+
T Consensus 13 ~~k~irvgiIG~G~~~~~~~~~h~~ai~~~~-~~~~ivav~d~-~~~~~~~~~~---~~~~~~--~~-------~~---- 74 (237)
T d2nvwa1 13 SSRPIRVGFVGLTSGKSWVAKTHFLAIQQLS-SQFQIVALYNP-TLKSSLQTIE---QLQLKH--AT-------GF---- 74 (237)
T ss_dssp GGCCEEEEEECCCSTTSHHHHTHHHHHHHTT-TTEEEEEEECS-CHHHHHHHHH---HTTCTT--CE-------EE----
T ss_pred CCCCeEEEEEecCccccHHHHHHHHHHHhcC-CCeEEEEEEcC-CHHHHHHHHH---hccccc--ce-------ee----
Confidence 34579999999875 6677777776542 45999999986 5554444332 111100 00 01
Q ss_pred EEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC-----CEEEEcCCC
Q 014890 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA-----KKVLITAPG 192 (416)
Q Consensus 141 I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA-----kkVIIsaps 192 (416)
.+.+++ ..+..+|+|+-||......+.+...+++|. |.|++--|-
T Consensus 75 ------~~~~~l-~~~~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPl 124 (237)
T d2nvwa1 75 ------DSLESF-AQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWAL 124 (237)
T ss_dssp ------SCHHHH-HHCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSS
T ss_pred ------cchhhc-ccccccceeeccCCCcchhhHHHHHHHhcccccCCceEEEeccc
Confidence 112222 122378999999999999999999999996 678886664
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.61 E-value=0.00055 Score=59.23 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=29.4
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCC-CCceEEEEecC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAINDT 103 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~-~~~~vVaINd~ 103 (416)
.+++|+|.|||-||+.+++.+.++.. -++.+++|-+.
T Consensus 3 k~i~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s 40 (168)
T d1ebfa1 3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEA 40 (168)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECS
T ss_pred CEEEEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEe
Confidence 46899999999999999999987643 13677777653
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.10 E-value=0.0042 Score=51.61 Aligned_cols=69 Identities=22% Similarity=0.257 Sum_probs=48.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
|||||+| .||.||.+.+.+.+++ +++++.-|. ++ .+ .
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~---~~l~~~id~------------~~--------~~---------------~---- 38 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKG---HELVLKVDV------------NG--------VE---------------E---- 38 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEEET------------TE--------EE---------------E----
T ss_pred CEEEEECCCCHHHHHHHHHHhcCC---CeEEEEECC------------Cc--------HH---------------H----
Confidence 5899999 5999999998887764 677654321 10 00 0
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
+ .+.|+|||=|-.....+.++..++.|.+ +|+
T Consensus 39 ----~----~~~DVvIDFS~p~~~~~~l~~~~~~~~p-~Vi 70 (128)
T d1vm6a3 39 ----L----DSPDVVIDFSSPEALPKTVDLCKKYRAG-LVL 70 (128)
T ss_dssp ----C----SCCSEEEECSCGGGHHHHHHHHHHHTCE-EEE
T ss_pred ----h----ccCCEEEEecCHHHHHHHHHHHHhcCCC-EEE
Confidence 0 1469999988888877888888888874 444
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.62 E-value=0.0013 Score=56.00 Aligned_cols=92 Identities=22% Similarity=0.272 Sum_probs=57.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCC-CCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~-~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
.++||||+|+|.+|+..++++.+.+. ..+.+++..+. +. + .. ... +..
T Consensus 6 ~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~---~~----~--~~------------~~~-~~~--------- 54 (172)
T d1lc0a1 6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSR---RE----L--GS------------LDE-VRQ--------- 54 (172)
T ss_dssp CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECS---SC----C--CE------------ETT-EEB---------
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccch---HH----H--HH------------hhc-cCc---------
Confidence 36899999999999999998765321 12444333321 00 0 00 000 000
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+-||+...-.+.+...+++| |.|++--|-
T Consensus 55 -~~~~e~-l~~~~iD~V~I~tp~~~H~~~~~~al~~g-k~V~~EKP~ 98 (172)
T d1lc0a1 55 -ISLEDA-LRSQEIDVAYICSESSSHEDYIRQFLQAG-KHVLVEYPM 98 (172)
T ss_dssp -CCHHHH-HHCSSEEEEEECSCGGGHHHHHHHHHHTT-CEEEEESCS
T ss_pred -CCHHHH-HhCCCcchhhhcccccccccccccccccc-hhhhcCCCc
Confidence 000011 12347899999999999999999999999 578886664
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.013 Score=50.43 Aligned_cols=31 Identities=29% Similarity=0.240 Sum_probs=27.3
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.||.|.| +|.||+.+++.|+++. .+|+++..
T Consensus 4 kkIlV~GatG~iG~~v~~~Ll~~g---~~V~~~~R 35 (205)
T d1hdoa_ 4 KKIAIFGATGQTGLTTLAQAVQAG---YEVTVLVR 35 (205)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEEc
Confidence 5899999 9999999999999875 78888864
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=95.02 E-value=0.015 Score=51.36 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=29.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCCh
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGV 106 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~ 106 (416)
..+|||.|||+||+.+++.+.... ++|.+.+....+
T Consensus 43 gk~vgIiG~G~IG~~va~~l~~fg---~~V~~~d~~~~~ 78 (197)
T d1j4aa1 43 DQVVGVVGTGHIGQVFMQIMEGFG---AKVITYDIFRNP 78 (197)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTT---CEEEEECSSCCH
T ss_pred CCeEEEecccccchhHHHhHhhhc---ccccccCccccc
Confidence 468999999999999999998765 888777644333
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=94.99 E-value=0.0033 Score=53.91 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=68.6
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc-cccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk-yDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
.||+|.| +|-||++.|+.+...+ +.|+|+++---.+.+.+....+ |...|--...+.. ...-.-.+.+..+.++..
T Consensus 3 K~I~IlGsTGSIG~~tL~Vi~~~~-d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~-~~~l~~~~~~~~~~v~~g 80 (150)
T d1r0ka2 3 RTVTVLGATGSIGHSTLDLIERNL-DRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSL-YNDLKEALAGSSVEAAAG 80 (150)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTG-GGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGG-HHHHHHHTTTCSSEEEES
T ss_pred cEEEEECCCcHHHHHHHHHHHcCC-CCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHH-HHHHHHHhhhcccccccC
Confidence 5899999 9999999999998764 3599999976556665554443 3222210000000 000000012222333332
Q ss_pred cCC-CCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 147 RNP-VNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 147 ~~p-~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
.+- .++ ....+|+|+-+.-.+...+..-..+++| |++.+.
T Consensus 81 ~~~l~~~--~~~~~D~vv~Ai~G~~GL~~tl~ai~~g-k~iaLA 121 (150)
T d1r0ka2 81 ADALVEA--AMMGADWTMAAIIGCAGLKATLAAIRKG-KTVALA 121 (150)
T ss_dssp HHHHHHH--HTSCCSEEEECCCSGGGHHHHHHHHHTT-SEEEEC
T ss_pred ccchhee--cccccceeeeecCchhHHHHHHHHHhcC-CEEEEe
Confidence 211 111 1236899999999999988888888998 567774
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.83 E-value=0.024 Score=48.01 Aligned_cols=144 Identities=13% Similarity=0.132 Sum_probs=77.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe-cc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS-NR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~-~~ 147 (416)
=+|.|.|.|.||...+..+..+.- -.|+++-. +.+.+..+.++ |. + ..++-+...... .+
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga--~~Vi~~~~--~~~~~~~a~~l----Ga---~--------~vi~~~~~~~~~~~~ 90 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGA--ENVIVIAG--SPNRLKLAEEI----GA---D--------LTLNRRETSVEERRK 90 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTB--SEEEEEES--CHHHHHHHHHT----TC---S--------EEEETTTSCHHHHHH
T ss_pred CEEEEECCCccchhheeccccccc--cccccccc--ccccccccccc----cc---e--------EEEeccccchHHHHH
Confidence 479999999999999998887751 15555532 23333232221 21 0 001000000000 00
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCc-c-CCCCCCCeEecCCcchhhh
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNA-D-AYKPDEPIISNASCTTNCL 225 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~-~-~y~~~~~IISnaSCTTn~L 225 (416)
...++ ....|+|+||||+|.-.+.+.+-..++.|.+=|++-.+..+ .|.- .|. . .+.++..|...-..+..-+
T Consensus 91 ~i~~~-~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~-~~~~---~~~~~~l~~k~l~i~G~~~~~~~~~ 165 (182)
T d1vj0a2 91 AIMDI-THGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQ-DPVP---FKVYEWLVLKNATFKGIWVSDTSHF 165 (182)
T ss_dssp HHHHH-TTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCC-CCEE---ECHHHHTTTTTCEEEECCCCCHHHH
T ss_pred HHHHh-hCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCC-Cccc---cccHHHHHHCCcEEEEEEeCCHHHH
Confidence 00000 01237999999999977778888888887754455333322 3321 221 2 2333445665555566777
Q ss_pred HHHHHHHHHHh
Q 014890 226 APFVKVLDQKF 236 (416)
Q Consensus 226 ap~lkvL~~~f 236 (416)
-.+++.+.+++
T Consensus 166 ~~~~~~i~~~~ 176 (182)
T d1vj0a2 166 VKTVSITSRNY 176 (182)
T ss_dssp HHHHHHHHTCH
T ss_pred HHHHHHHHHCh
Confidence 77888877766
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.82 E-value=0.013 Score=47.54 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=30.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhh
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASH 111 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~ 111 (416)
|||.|.|+|++|+.+++.|.+++ .+|+.|-. +++.+..
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g---~~v~vid~--d~~~~~~ 38 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKG---HDIVLIDI--DKDICKK 38 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEEES--CHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CCcceecC--Chhhhhh
Confidence 58999999999999999998875 78888853 4554443
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=94.32 E-value=0.017 Score=50.86 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=27.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+||+.+++.+.... ++|.+.+.
T Consensus 45 ~ktvgIiG~G~IG~~va~~l~~fg---~~v~~~d~ 76 (199)
T d1dxya1 45 QQTVGVMGTGHIGQVAIKLFKGFG---AKVIAYDP 76 (199)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTT---CEEEEECS
T ss_pred ceeeeeeecccccccccccccccc---eeeeccCC
Confidence 358999999999999999998765 88877653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.32 E-value=0.023 Score=47.65 Aligned_cols=134 Identities=15% Similarity=0.150 Sum_probs=72.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-+|.|.|.|.||...+..+.... .++|++-+. .+.+..+.+ +|. + ..++ ..+
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~G---a~~i~~~~~--~~~~~~a~~----lGa----------d-~~i~--------~~~ 83 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMG---AHVVAFTTS--EAKREAAKA----LGA----------D-EVVN--------SRN 83 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEEESS--GGGHHHHHH----HTC----------S-EEEE--------TTC
T ss_pred CEEEEeccchHHHHHHHHhhccc---ccchhhccc--hhHHHHHhc----cCC----------c-EEEE--------Cch
Confidence 47999999999999888777664 566666543 222222211 111 0 0011 111
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccC-CCCCCCeEecCCcchhhhHH
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA-YKPDEPIISNASCTTNCLAP 227 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~-y~~~~~IISnaSCTTn~Lap 227 (416)
+....+...++|+||||+|.-.+.+.+-..++.|-+-|++..+..+ .+. +|... +.++..|+..-.++...+.-
T Consensus 84 ~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~-~~~----~~~~~l~~k~~~i~Gs~~~~~~d~~e 158 (168)
T d1uufa2 84 ADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATP-HKS----PEVFNLIMKRRAIAGSMIGGIPETQE 158 (168)
T ss_dssp HHHHHTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC------------CHHHHHTTTCEEEECCSCCHHHHHH
T ss_pred hhHHHHhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCCC-ccc----ccHHHHHHCCcEEEEEeecCHHHHHH
Confidence 1111122358999999999887777776666666544555434322 111 12221 22344677666667666666
Q ss_pred HHHHHHHH
Q 014890 228 FVKVLDQK 235 (416)
Q Consensus 228 ~lkvL~~~ 235 (416)
+++.+.++
T Consensus 159 ~l~l~a~~ 166 (168)
T d1uufa2 159 MLDFCAEH 166 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66655443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.87 E-value=0.026 Score=47.00 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=29.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhh
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHL 112 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~L 112 (416)
|||||.|+|++|..+++.|.+.. .+|++.+ . +.+.+..+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g---~~V~~~d-~-~~~~~~~a 39 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRG---HYLIGVS-R-QQSTCEKA 39 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEEC-S-CHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCC---CEEEEEE-C-CchHHHHH
Confidence 58999999999999999988764 7888774 3 44444433
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=93.75 E-value=0.026 Score=49.53 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=27.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|||.|||+||+.+++.+...+ ++|.+.+..
T Consensus 49 gktvgIiG~G~IG~~va~~l~~fg---~~v~~~d~~ 81 (193)
T d1mx3a1 49 GETLGIIGLGRVGQAVALRAKAFG---FNVLFYDPY 81 (193)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTT---CEEEEECTT
T ss_pred CceEEEeccccccccceeeeeccc---cceeeccCc
Confidence 358999999999999999998765 888777653
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.50 E-value=0.028 Score=46.51 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=28.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
|||||.|+|.+|+.+++.|.+.. ++++..|+.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g---~~v~~~~~~ 32 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRG---VEVVTSLEG 32 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT---CEEEECCTT
T ss_pred CEEEEEcHHHHHHHHHHHHHHCC---CeEEEEcCc
Confidence 58999999999999999999875 788877764
|
| >d2g17a2 d.81.1.1 (A:154-308) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=93.01 E-value=0.62 Score=39.34 Aligned_cols=64 Identities=6% Similarity=0.014 Sum_probs=51.0
Q ss_pred cccccCCCChHHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhccc
Q 014890 284 LNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 347 (416)
Q Consensus 284 ~NIIPt~tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~ 347 (416)
.|+-|-..+.-+.+..+.-+|.-++.-+..-+|..+|=+..++++++++++.+|+.++|+++=+
T Consensus 49 ~~~~~Y~~~~HrH~pEI~q~l~~~i~F~Phl~p~~RGIl~Ti~~~l~~~~s~~~i~~~~~~~Y~ 112 (155)
T d2g17a2 49 VSLQPYGVFTHRHQPEIAVHLGAEVIFTPHLGNFPRGILETITCRLKAGVTHAQVADVLQKAYG 112 (155)
T ss_dssp CSEEECSTTTCTHHHHHHHHHTSCCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHT
T ss_pred ceeeeccccccccHHHHHHHhCcCceeeecccccccccccccccccchhhhhHHHHHHHHHHHh
Confidence 4677766544444555555677778888999999999999999999999999999999998643
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.81 E-value=0.043 Score=47.54 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=26.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
..+|||.|||+||+.+++.+.... ++|.+.+
T Consensus 42 gk~vgIiG~G~IG~~va~~l~~~g---~~v~~~d 72 (181)
T d1qp8a1 42 GEKVAVLGLGEIGTRVGKILAALG---AQVRGFS 72 (181)
T ss_dssp TCEEEEESCSTHHHHHHHHHHHTT---CEEEEEC
T ss_pred CceEEEeccccccccceeeeeccc---ccccccc
Confidence 468999999999999999998765 7876664
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.65 E-value=0.037 Score=44.26 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=28.2
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHH
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQA 109 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~ 109 (416)
|+.|.|+|++|+.+++.|.+++ .++++|-. +++.+
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g---~~vvvid~--d~~~~ 36 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMG---HEVLAVDI--NEEKV 36 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT---CCCEEEES--CHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHCC---CeEEEecC--cHHHH
Confidence 6889999999999999999875 68877753 44444
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.23 E-value=0.11 Score=42.23 Aligned_cols=90 Identities=21% Similarity=0.202 Sum_probs=57.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||+|.|.|..|+.+++.+... ..+++||.=|- +++ -+|+ .++|.+| +...
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~--~~~~iv~fiDd-d~~----------k~G~-------------~I~Gi~V--~~~~ 54 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFG--ESFELRGFFDV-DPE----------KVGR-------------PVRGGVI--EHVD 54 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCC--SSEEEEEEEES-CTT----------TTTC-------------EETTEEE--EEGG
T ss_pred CceEEEEcCCHHHHHHHHhHhhc--CCcEEEEEEeC-chH----------hcCC-------------EECCEEE--ecHH
Confidence 57999999999999998865433 35999888663 110 0121 2566544 3433
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVI 187 (416)
+..++- ...+++++-|......++-...-++.|.|.+.
T Consensus 55 ~l~~~~--~~~i~iai~~i~~~~~~~I~d~l~~~gIk~I~ 92 (126)
T d2dt5a2 55 LLPQRV--PGRIEIALLTVPREAAQKAADLLVAAGIKGIL 92 (126)
T ss_dssp GHHHHS--TTTCCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHH--hhcccEEEEeCCHHHHHHHHHHHHHcCCCEEe
Confidence 333321 34678999888876555555666778998643
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=92.06 E-value=0.085 Score=43.75 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=45.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-||+|.|.|.||..++-.+..++- .+++.+....+.. .-..-|..|.... .+. .+++....|
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l--~dl~l~D~~~~~~---~~~~~Dl~~~~~~------~~~-------~~~i~~~~d 63 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKEL--GDIVLLDIVEGVP---QGKALDLYEASPI------EGF-------DVRVTGTNN 63 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC--SEEEEECSSSSHH---HHHHHHHHTTHHH------HTC-------CCCEEEESC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCc--ceEEEEeeccccc---hhHHHHhhccccc------cCC-------CCEEEecCc
Confidence 389999999999999887776542 4777765432211 1111143332210 000 112223345
Q ss_pred CCCCCCCCccccEEEcCCCCCCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVD 171 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s 171 (416)
++++ .+.|+|+-++|.-..
T Consensus 64 ~~~~----~~advvvitag~~~~ 82 (142)
T d1uxja1 64 YADT----ANSDVIVVTSGAPRK 82 (142)
T ss_dssp GGGG----TTCSEEEECCSCC--
T ss_pred HHHh----cCCCEEEEeeeccCC
Confidence 5544 378999999997543
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=91.90 E-value=0.067 Score=44.57 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=29.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhh
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASH 111 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~ 111 (416)
|||||.|+|.+|+.+++.|.+.. ++|.+-|- +++.+..
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G---~~V~~~d~--~~~~~~~ 38 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAG---YSLVVSDR--NPEAIAD 38 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT---CEEEEECS--CHHHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCC---CeEEEEeC--CcchhHH
Confidence 58999999999999999998875 78776653 3444433
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=91.60 E-value=0.22 Score=42.09 Aligned_cols=116 Identities=18% Similarity=0.121 Sum_probs=59.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
=+|.|.|.|.||...+..+....- -+|+++. . +.+.+....+ +|-. ..+. ..++... . .+.
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga--~~Vi~~d-~-~~~r~~~a~~----lGa~-~~i~-~~~~~~~--~---~v~---- 89 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGA--GRIIGVG-S-RPICVEAAKF----YGAT-DILN-YKNGHIE--D---QVM---- 89 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTC--SCEEEEC-C-CHHHHHHHHH----HTCS-EEEC-GGGSCHH--H---HHH----
T ss_pred CEEEEEcCCcchhhhhhhhhcccc--ccccccc-c-hhhhHHHHHh----hCcc-cccc-ccchhHH--H---HHH----
Confidence 379999999999999888876541 2454443 2 2222222222 2210 0010 0000000 0 000
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 207 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~ 207 (416)
++. ...|+|+||||+|.....+.+-..++.|.+=|++..+.. .....++-++...
T Consensus 90 --~~t-~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~-~~~~~~~~~~~~~ 144 (174)
T d1jqba2 90 --KLT-NGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGS-GDALLIPRVEWGC 144 (174)
T ss_dssp --HHT-TTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCS-SSEEEEETTTTGG
T ss_pred --HHh-hccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCC-CCcCcCcHhHHHH
Confidence 000 124899999999987777777777776664344433333 2334455555443
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.53 E-value=0.3 Score=39.06 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=60.7
Q ss_pred eEEEEc----cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 70 KVAING----FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 70 kVaING----fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
+|||.| -|+.|..+++-|.+.. ++|..||-- +++ +.|.+ ++
T Consensus 3 sIAVvGaS~~~~k~g~~v~~~L~~~g---~~V~pVnP~-----------~~~------------------i~G~~--~y- 47 (116)
T d1y81a1 3 KIALVGASKNPAKYGNIILKDLLSKG---FEVLPVNPN-----------YDE------------------IEGLK--CY- 47 (116)
T ss_dssp EEEEETCCSCTTSHHHHHHHHHHHTT---CEEEEECTT-----------CSE------------------ETTEE--CB-
T ss_pred EEEEEcccCCCCCcHHHHHHHHHHCC---CEEEEEccc-----------ccc------------------ccCcc--cc-
Confidence 689999 4899999999999875 799999832 222 23322 21
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
++..++| ..+|+|+-+++.....+-.+..++.|+|.+++...
T Consensus 48 -~sl~~lp---~~~D~vvi~vp~~~~~~~l~~~~~~g~k~v~~~~g 89 (116)
T d1y81a1 48 -RSVRELP---KDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWFQPG 89 (116)
T ss_dssp -SSGGGSC---TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred -ccchhcc---ccceEEEEEeCHHHHHHHHHHHHhcCCceEEeccc
Confidence 3344454 46899999999888888888888999998877543
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=91.48 E-value=0.33 Score=40.36 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=25.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.+||+|.|.|.||..++..|..++-. =||+-+.
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~-~elvL~D 37 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIA-EEFVIVD 37 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCC-SEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC-cEEEEee
Confidence 46999999999999999888876421 2665554
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.41 E-value=0.25 Score=40.91 Aligned_cols=84 Identities=21% Similarity=0.219 Sum_probs=61.8
Q ss_pred eEEEEc----cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 70 KVAING----FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 70 kVaING----fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
+|||+| -|+.|..+++.|.+.. ++|+.||-- |+. |.|.++ +
T Consensus 21 sIAVVGaS~~~~~~g~~v~~~L~~~g---~~v~pVnP~-----------~~~------------------i~G~~~--~- 65 (139)
T d2d59a1 21 KIALVGASPKPERDANIVMKYLLEHG---YDVYPVNPK-----------YEE------------------VLGRKC--Y- 65 (139)
T ss_dssp EEEEETCCSCTTSHHHHHHHHHHHTT---CEEEEECTT-----------CSE------------------ETTEEC--B-
T ss_pred eEEEEeecCCCCCchHHHHHHHHHCC---CEEEEECCc-----------ccc------------------cCCCcc--c-
Confidence 699999 3899999999998875 799999832 122 344332 1
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+..++| ..+|+|+-++......+..+..++.|+|.|++....
T Consensus 66 -~sl~dlp---~~iD~v~i~vp~~~~~~~~~e~~~~g~k~v~~~~G~ 108 (139)
T d2d59a1 66 -PSVLDIP---DKIEVVDLFVKPKLTMEYVEQAIKKGAKVVWFQYNT 108 (139)
T ss_dssp -SSGGGCS---SCCSEEEECSCHHHHHHHHHHHHHHTCSEEEECTTC
T ss_pred -ccccccC---ccceEEEEEeCHHHHHHHHHHHHHhCCCEEEEeccc
Confidence 3455565 368999999988777777888888999988775443
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=91.37 E-value=0.085 Score=46.00 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=26.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+||+.+++.+.... +++.+...
T Consensus 47 g~tvgIiG~G~IG~~va~~l~~fg---~~v~~~d~ 78 (191)
T d1gdha1 47 NKTLGIYGFGSIGQALAKRAQGFD---MDIDYFDT 78 (191)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTT---CEEEEECS
T ss_pred ccceEEeecccchHHHHHHHHhhc---cccccccc
Confidence 368999999999999999888765 78766653
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.00 E-value=0.16 Score=41.87 Aligned_cols=91 Identities=16% Similarity=0.069 Sum_probs=51.0
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCC
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p 149 (416)
+|.|.|.|.||...+..+.... .+|+++-. +.+.+.++.++ |. +.. +.++.. ..++
T Consensus 29 ~vlV~G~G~vG~~~~~~ak~~G---a~vi~v~~--~~~r~~~a~~~----ga---~~~------~~~~~~------~~~~ 84 (170)
T d1e3ja2 29 TVLVIGAGPIGLVSVLAAKAYG---AFVVCTAR--SPRRLEVAKNC----GA---DVT------LVVDPA------KEEE 84 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT---CEEEEEES--CHHHHHHHHHT----TC---SEE------EECCTT------TSCH
T ss_pred EEEEEcccccchhhHhhHhhhc---ccccccch--HHHHHHHHHHc----CC---cEE------Eecccc------cccc
Confidence 7999999999999998887764 57777743 23333332221 11 000 000000 0000
Q ss_pred CC----C-CCCCccccEEEcCCCCCCCHhhHHHHHHcCCC
Q 014890 150 VN----L-PWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (416)
Q Consensus 150 ~~----i-~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAk 184 (416)
.+ + .....++|+||||+|.-.+.+.+-..++.|.+
T Consensus 85 ~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~ 124 (170)
T d1e3ja2 85 SSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGT 124 (170)
T ss_dssp HHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCE
T ss_pred chhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCc
Confidence 00 0 00124789999999987666666666666663
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=90.90 E-value=0.1 Score=45.05 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=26.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+||+.+++.+.... ++|.+.+.
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg---~~v~~~d~ 75 (188)
T d1sc6a1 44 GKKLGIIGYGHIGTQLGILAESLG---MYVYFYDI 75 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEEEECS
T ss_pred ceEEEEeecccchhhhhhhccccc---ceEeeccc
Confidence 468999999999999999888764 78766653
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.76 E-value=0.18 Score=41.52 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=31.3
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhh
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL 113 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Ll 113 (416)
||+|.|.|.||..+++.|.+.. ...+|.++.. +.+.+.++.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g-~~~~I~~~D~--~~~~~~~a~ 43 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSG-FKGKIYGYDI--NPESISKAV 43 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTT-CCSEEEEECS--CHHHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcC-CCeEEEEEEC--ChHHHHHHH
Confidence 7999999999999999998764 2368888753 455555554
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.68 E-value=0.075 Score=44.72 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=52.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-+|.|.|.|.||...+..+.... ..+|.+-|. +.+.+..+-+ +|. +. ++..++
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g---~~~v~~~~~-~~~k~~~a~~----~Ga----------~~---------~i~~~~ 82 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCG---ASIIIAVDI-VESRLELAKQ----LGA----------TH---------VINSKT 82 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHT---CSEEEEEES-CHHHHHHHHH----HTC----------SE---------EEETTT
T ss_pred CEEEEeCCCHHHhhhhhcccccc---cceeeeecc-HHHHHHHHHH----cCC----------eE---------EEeCCC
Confidence 47999999999999988876654 344444443 2333333222 221 00 001111
Q ss_pred CCCCC----CCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 149 PVNLP----WGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 149 p~~i~----W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
++-.. -...|+|+||||+|.--..+.+...++.|-+=+++..+
T Consensus 83 ~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~ 129 (174)
T d1f8fa2 83 QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAP 129 (174)
T ss_dssp SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCC
T ss_pred cCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeec
Confidence 10000 01237999999999876667666666665543444333
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.64 E-value=0.1 Score=43.53 Aligned_cols=94 Identities=22% Similarity=0.250 Sum_probs=53.2
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCC
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p 149 (416)
+|.|.|.|.||...+..+..+.. -.|+++. . +.+.+....+ +|. +.. ......++
T Consensus 29 ~VlI~G~G~iG~~~~~~a~~~G~--~~Vi~~d-~-~~~rl~~a~~----~Ga---~~~--------------~~~~~~~~ 83 (171)
T d1pl8a2 29 KVLVCGAGPIGMVTLLVAKAMGA--AQVVVTD-L-SATRLSKAKE----IGA---DLV--------------LQISKESP 83 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC--SEEEEEE-S-CHHHHHHHHH----TTC---SEE--------------EECSSCCH
T ss_pred EEEEECCCccHHHHHHHHHHcCC--ceEEecc-C-CHHHHHHHHH----hCC---ccc--------------cccccccc
Confidence 79999999999999988877652 2555553 2 2333322222 121 000 00001111
Q ss_pred CCCCC-----CCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 150 VNLPW-----GDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 150 ~~i~W-----~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
.+... ...++|+||||+|.-...+.+-..++.|-+=+++
T Consensus 84 ~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 84 QEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp HHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred ccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEE
Confidence 00000 0137899999999977778888888777643333
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=90.56 E-value=0.099 Score=43.85 Aligned_cols=40 Identities=18% Similarity=0.383 Sum_probs=31.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhh
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL 113 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Ll 113 (416)
|||||.|+|++|..+++.|.+.. ++|.+.|- +.+.+..|.
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G---~~V~~~dr--~~~~~~~l~ 41 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKG---FKVAVFNR--TYSKSEEFM 41 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT---CCEEEECS--SHHHHHHHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCC---CeEEEEEC--CHHHHHHHH
Confidence 58999999999999999999875 78777663 455554454
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.47 E-value=0.37 Score=41.59 Aligned_cols=35 Identities=26% Similarity=0.185 Sum_probs=28.0
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+..||-|-| +|.||+.+++.|++++. --+|.+++.
T Consensus 13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~-~~~v~~~~R 48 (232)
T d2bkaa1 13 QNKSVFILGASGETGRVLLKEILEQGL-FSKVTLIGR 48 (232)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTC-CSEEEEEES
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCC-CCEEEEEec
Confidence 356899999 99999999999998742 127888874
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=90.28 E-value=0.14 Score=41.76 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=25.9
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
+-||+|.| +|.+|+.+++.|.+.. ++|.+.+
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G---~~V~~~d 40 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASG---YPISILD 40 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTT---CCEEEEC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcC---CCcEecc
Confidence 45999999 9999999999998764 6776655
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=90.27 E-value=0.11 Score=44.81 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=26.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+.... ++|.+...
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg---~~v~~~d~ 75 (188)
T d2naca1 44 AMHVGTVAAGRIGLAVLRRLAPFD---VHLHYTDR 75 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGT---CEEEEECS
T ss_pred ccceeeccccccchhhhhhhhccC---ceEEEEee
Confidence 369999999999999999987764 78766654
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.11 E-value=0.15 Score=40.90 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=28.8
Q ss_pred eeEEEE-ccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhh
Q 014890 69 LKVAIN-GFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHL 112 (416)
Q Consensus 69 ikVaIN-GfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~L 112 (416)
|||+|. |.|.||+.+.+.|.... .+|+..+- +++.+..+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G---~~V~l~~R--~~e~~~~l 40 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLG---HEIVVGSR--REEKAEAK 40 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT---CEEEEEES--SHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC---CEEEEEEC--CHHHHHHH
Confidence 589999 69999999999999875 57665542 44444333
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=90.09 E-value=0.33 Score=41.19 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=26.3
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
+.-||+|.|.|.||..++-.+..++-- =|++-+.
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~-~ElvLiD 52 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISILGKSLA-DELALVD 52 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCC-SEEEEEC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCC-cEEEEEE
Confidence 346999999999999999999887521 1666664
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=89.75 E-value=0.2 Score=42.13 Aligned_cols=93 Identities=18% Similarity=0.286 Sum_probs=53.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
..||.|.|+|.+|+.+++.|..++- =++..+|.. .+....|.+ .+ +++.+.+ .
T Consensus 24 ~~~ilviGaG~~g~~v~~~L~~~g~--~~i~v~nRt--~~ka~~l~~---~~-----------------~~~~~~~---~ 76 (159)
T d1gpja2 24 DKTVLVVGAGEMGKTVAKSLVDRGV--RAVLVANRT--YERAVELAR---DL-----------------GGEAVRF---D 76 (159)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCC--SEEEEECSS--HHHHHHHHH---HH-----------------TCEECCG---G
T ss_pred cCeEEEECCCHHHHHHHHHHHhcCC--cEEEEEcCc--HHHHHHHHH---hh-----------------hcccccc---h
Confidence 3589999999999999999988642 146567764 222222221 01 1111110 0
Q ss_pred CCCCCCCCCccccEEEcCCCCC---CCHhhHHHHHHc---CCCEEEEcC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVF---VDREGAGKHIQA---GAKKVLITA 190 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f---~s~~~a~~hl~a---GAkkVIIsa 190 (416)
+..+ .-...|+||.|||.. ++++..+..++. +-+.+||+-
T Consensus 77 ~~~~---~l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDl 122 (159)
T d1gpja2 77 ELVD---HLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDI 122 (159)
T ss_dssp GHHH---HHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred hHHH---HhccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEee
Confidence 0000 012689999999864 677777666653 223477764
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.73 E-value=0.22 Score=42.75 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=28.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCCh
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGV 106 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~ 106 (416)
..+|||.|+|+||+.+++.+.... ++|++.+.....
T Consensus 44 ~k~vgiiG~G~IG~~va~~~~~fg---~~v~~~d~~~~~ 79 (184)
T d1ygya1 44 GKTVGVVGLGRIGQLVAQRIAAFG---AYVVAYDPYVSP 79 (184)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTT---CEEEEECTTSCH
T ss_pred ceeeeeccccchhHHHHHHhhhcc---ceEEeecCCCCh
Confidence 468999999999999999987764 788877654333
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=89.24 E-value=0.2 Score=37.96 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=52.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-||+|.|+|..|+.++|.|.++. .+|.+..+-.+++.. ..++ .+..+.++ .
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~g---~~v~~~D~~~~~~~~-~~~~---------------~~~~~~~~--------~-- 56 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLARG---VTPRVMDTRMTPPGL-DKLP---------------EAVERHTG--------S-- 56 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT---CCCEEEESSSSCTTG-GGSC---------------TTSCEEES--------B--
T ss_pred CEEEEEeECHHHHHHHHHHHHCC---CEEEEeeCCcCchhH-HHHh---------------hccceeec--------c--
Confidence 48999999999999999998875 455555543222211 1111 01111111 1
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
.....| .++|+|+=+.|.-.+.+......+.|+
T Consensus 57 ~~~~~~--~~~d~vi~SPGi~~~~~~~~~a~~~gi 89 (93)
T d2jfga1 57 LNDEWL--MAADLIVASPGIALAHPSLSAAADAGI 89 (93)
T ss_dssp CCHHHH--HHCSEEEECTTSCTTSHHHHHHHHTTC
T ss_pred cchhhh--ccCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 111112 378999999999888888888888887
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=89.19 E-value=0.18 Score=46.15 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=60.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCC---------Chh-HHhhhhcc-ccccccCCCceeeecCCeEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG---------GVK-QASHLLKY-DSTLGIFEADVKPVGTDGISV 136 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~---------~~~-~~a~Llky-DS~~G~f~~~v~~~~~~~i~v 136 (416)
..||+|=|||-+|+.+++.|.+.. ..||+|.|.. +++ .+.|+.+. +...++...-.. ..
T Consensus 36 g~~v~IQGfGnVG~~~a~~L~e~G---akvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~-------~~ 105 (255)
T d1bgva1 36 GKTVALAGFGNVAWGAAKKLAELG---AKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYAD-------KF 105 (255)
T ss_dssp TCEEEECCSSHHHHHHHHHHHHHT---CEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHH-------HH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhh-------hc
Confidence 469999999999999999999875 7999998742 222 22222210 000111110000 01
Q ss_pred CCEEEEEEeccCCCCCCCCCccccEEEcCC-CCCCCHhhHHHHHHcCCCEEEE
Q 014890 137 DGKVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 137 ~G~~I~v~~~~~p~~i~W~~~gvDiVie~T-G~f~s~~~a~~hl~aGAkkVII 188 (416)
+.+ .+. +++ +|. ..+||.+=|. +..++.+.+.+-...|+| +|+
T Consensus 106 ~~~---~~~---~~~-~~~-~~~DiliPcA~~~~I~~~~a~~l~a~~ck-~I~ 149 (255)
T d1bgva1 106 GVQ---FFP---GEK-PWG-QKVDIIMPCATQNDVDLEQAKKIVANNVK-YYI 149 (255)
T ss_dssp TCE---EEE---TCC-GGG-SCCSEEECCSCTTCBCHHHHHHHHHTTCC-EEE
T ss_pred Cce---eec---hhh-ccc-ccccEEeeccccccccHHHHHhhhhcCce-EEe
Confidence 111 111 222 253 5899998874 667888888877777885 455
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.87 E-value=0.73 Score=37.36 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=61.0
Q ss_pred eeEEEEcc----ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 69 LKVAINGF----GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 69 ikVaINGf----GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
-+|||+|- |+.|+.+++.|.+.. .-+|..||-. ++. |.|.+ .
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~--~g~v~pVnP~-----------~~~------------------i~G~~--~- 54 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYK--KGKVYPVNIK-----------EEE------------------VQGVK--A- 54 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCC--SSEEEEECSS-----------CSE------------------ETTEE--C-
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcC--CCcEEEeccC-----------ccc------------------cCCeE--e-
Confidence 47999993 999999999986542 3588888842 222 33422 2
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
-++..++| ..+|+|+-++......+-.+...+.|+|.+++-++
T Consensus 55 -y~sl~dlp---~~vDlvvi~vp~~~~~~~~~~~~~~g~~~~vi~s~ 97 (129)
T d2csua1 55 -YKSVKDIP---DEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITA 97 (129)
T ss_dssp -BSSTTSCS---SCCSEEEECSCHHHHHHHHHHHHHHTCCEEEECCC
T ss_pred -ecchhhcC---CCCceEEEecChHHhHHHHHHHHHcCCCEEEEecc
Confidence 25567776 37899999998877777777888899998777544
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=88.82 E-value=0.2 Score=40.52 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=27.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
-||.|.|.|++|+.+++.|.+++ .+|+.+|..
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g---~~V~v~dr~ 34 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSG---IKVTVACRT 34 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTT---CEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEECC
Confidence 38999999999999999998875 688888863
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.50 E-value=0.48 Score=39.29 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=23.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|||+|.| .|.||..++..+..++-- =|++-+.
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~-~el~L~D 33 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFM-KDLVLIG 33 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTC-CEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcc-ccccccc
Confidence 5899999 699999999988876520 1555453
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.29 E-value=0.2 Score=41.54 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=30.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhh
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL 113 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Ll 113 (416)
.|||+.|+|.+|..+++.|.... ++|.+.|- +.+.+..+.
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g---~~v~~~d~--~~~~~~~~~ 41 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAG---YLLNVFDL--VQSAVDGLV 41 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT---CEEEEECS--SHHHHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCC---CeEEEEEC--chhhhhhhh
Confidence 48999999999999999998875 78777663 344443433
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.28 E-value=0.75 Score=37.96 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=23.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
.||+|.|.|.||..++-.+..++-. -||+-+
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~~l~-~el~L~ 37 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQGIA-DEIVLI 37 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCC-SEEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCC-ceEEEE
Confidence 5999999999999999888775421 155544
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=87.83 E-value=0.25 Score=39.87 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=26.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||+|.|.|.||..+...|.+.. .+|..+..
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G---~~V~~~~r 31 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQG---HEVQGWLR 31 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEECS
T ss_pred CEEEEECcCHHHHHHHHHHHHCC---CceEEEEc
Confidence 69999999999999999988764 67766654
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.80 E-value=1.3 Score=41.02 Aligned_cols=33 Identities=27% Similarity=0.523 Sum_probs=29.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|+|=|||-||+.+++.|.+.. ..||+|.|.
T Consensus 36 gktvaIqGfGnVG~~~A~~L~e~G---akvv~vsD~ 68 (293)
T d1hwxa1 36 DKTFAVQGFGNVGLHSMRYLHRFG---AKCVAVGES 68 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEEEEEET
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcc
Confidence 358999999999999999999875 799999873
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=87.78 E-value=0.4 Score=40.51 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=67.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc-cccccccCCCceeeec--CCeEEECCEEEEEE
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVG--TDGISVDGKVIQVV 144 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk-yDS~~G~f~~~v~~~~--~~~i~v~G~~I~v~ 144 (416)
-||+|.| +|-||++.|+.+...+ +.|+|+++---.+.+.+....+ |...|--...+-. .. .+.+.-.+..+.++
T Consensus 2 K~I~IlGsTGSIG~~tL~Vi~~~~-d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~-~~~l~~~l~~~~~~~~~~ 79 (151)
T d1q0qa2 2 KQLTILGSTGSIGCSTLDVVRHNP-EHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEAS-AKLLKTMLQQQGSRTEVL 79 (151)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCT-TTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHH-HHHHHHHHHHTTCCCEEE
T ss_pred CeEEEEcCCcHHHHHHHHHHHhCC-CCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHH-HHHHHHHhhhhccccccc
Confidence 3899999 9999999999998875 3599999876556665554432 3332210000000 00 00011112223333
Q ss_pred eccC-CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 145 SNRN-PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 145 ~~~~-p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
...+ ..++ =....+|+|+-+.-.+...+..-..+++| |++.+.
T Consensus 80 ~g~~~l~~~-~~~~~~D~vi~AI~G~aGL~~t~~aik~g-k~iaLA 123 (151)
T d1q0qa2 80 SGQQAACDM-AALEDVDQVMAAIVGAAGLLPTLAAIRAG-KTILLA 123 (151)
T ss_dssp ESHHHHHHH-HTCTTCCEEEECCSSGGGHHHHHHHHHTT-CEEEEC
T ss_pred cChHHHHHH-hcCCCCCEEEEecCcccHHHHHHHHHhcC-CeEEEE
Confidence 2111 1000 01126899999999998888877888888 566664
|
| >d2cvoa2 d.81.1.1 (A:219-383) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=87.63 E-value=2.1 Score=36.19 Aligned_cols=43 Identities=5% Similarity=0.012 Sum_probs=37.0
Q ss_pred CCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccc
Q 014890 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN 348 (416)
Q Consensus 306 gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~ 348 (416)
-++.-+..-+|..+|=++.+.+.++++++.+|+.++|++.=++
T Consensus 78 ~~~~F~P~l~p~~RGil~ti~~~~~~~~~~~~i~~~~~~~Y~~ 120 (165)
T d2cvoa2 78 VTISFTPNLICMKRGMQSTMFVEMAPGVTANDLYQHLKSTYEG 120 (165)
T ss_dssp CCCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTT
T ss_pred ccEEEEeeeccccceeEEecccccccccchHHHHHHHHHHhhh
Confidence 3566777889999999999999999999999999999986443
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=87.55 E-value=0.12 Score=42.47 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=23.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
|||+|.|.|.||..++..+..++-- =||+-+
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~-~el~L~ 31 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLA-RELVLL 31 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC-SEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC-ceEEEe
Confidence 5999999999999999888876421 155444
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=87.29 E-value=1.1 Score=40.40 Aligned_cols=30 Identities=27% Similarity=0.222 Sum_probs=23.0
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEE
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
||+|+|.|.-|-..++.|.+++ ...+|+..
T Consensus 6 rVaIIGaG~sGl~~A~~L~~~~-~~~~v~vf 35 (335)
T d2gv8a1 6 KIAIIGAGPSGLVTAKALLAEK-AFDQVTLF 35 (335)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT-CCSEEEEE
T ss_pred eEEEECcCHHHHHHHHHHHHhC-CCCCEEEE
Confidence 8999999999998888887653 12466555
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=86.62 E-value=0.4 Score=41.32 Aligned_cols=31 Identities=29% Similarity=0.641 Sum_probs=27.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||-|-| .|-||+.+++.|.+++ .+|++++-
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g---~~Vi~~~r 33 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKN---VEVIPTDV 33 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSS---EEEEEECT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEeec
Confidence 6899999 8999999999998764 89998863
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.45 E-value=0.31 Score=40.28 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=23.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
|||+|.|.|+||..++-.+..++.- =|++-+
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~-~elvL~ 31 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDV-DEIALV 31 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCC-SEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcC-ceEEEE
Confidence 6999999999999999877765421 155555
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=86.27 E-value=1 Score=36.70 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=27.1
Q ss_pred ccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 157 LGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 157 ~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.|+|+||||+|.....+.+...++.|-..+++-.+.
T Consensus 97 ~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~ 132 (176)
T d2fzwa2 97 GGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVA 132 (176)
T ss_dssp SCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred CCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeec
Confidence 489999999998777777777777776666665544
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=86.22 E-value=0.83 Score=37.78 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=16.9
Q ss_pred eeEEEEc-cChhHHHHHHHHH
Q 014890 69 LKVAING-FGRIGRNFLRCWH 88 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~ 88 (416)
|||+|.| .|.||..++-.+.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~ 21 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLK 21 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHH
T ss_pred CEEEEEcCCChHHHHHHHHHH
Confidence 6999999 6999998876654
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.09 E-value=0.32 Score=40.03 Aligned_cols=31 Identities=16% Similarity=0.397 Sum_probs=25.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||||.|+|.+|+.+++.|...+ .++...+.
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~---~~i~v~~r 31 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTP---HELIISGS 31 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSS---CEEEEECS
T ss_pred CEEEEEeccHHHHHHHHHHHhCC---CeEEEEcC
Confidence 58999999999999999998754 46655553
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.09 E-value=0.79 Score=38.64 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=25.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
+.||+|.|.|.||..++..+..++-- =|++-+.
T Consensus 19 ~~KI~IIGaG~VG~~~A~~l~~~~l~-~elvL~D 51 (159)
T d2ldxa1 19 RCKITVVGVGDVGMACAISILLKGLA-DELALVD 51 (159)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTSC-SEEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCC-CEEEEEe
Confidence 46999999999999999988877521 1565554
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=84.67 E-value=0.73 Score=38.04 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=24.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|-||+|.|.|.||..++-.+..++-- =|++-+.
T Consensus 1 p~Ki~IIGaG~VG~~~a~~l~~~~l~-~ElvL~D 33 (143)
T d1llda1 1 PTKLAVIGAGAVGSTLAFAAAQRGIA-REIVLED 33 (143)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCC-SEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC-cEEEEEE
Confidence 35999999999999999888876521 1666554
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=84.62 E-value=0.37 Score=40.37 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=27.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
-+|||.|+|++|..+++.|.... ++|++.|-
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G---~~V~v~dr 33 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHG---FVVCAFNR 33 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT---CCEEEECS
T ss_pred CcEEEEeEhHHHHHHHHHHHHCC---CeEEEEcC
Confidence 48999999999999999999875 78888874
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=84.46 E-value=0.44 Score=40.21 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=19.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
-+|.|.|.|.||-..+..+....
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~G 52 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAG 52 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT
T ss_pred CEEEEECCChHHHHHHHHHHHhC
Confidence 47999999999999888887664
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=83.28 E-value=1.1 Score=36.92 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=23.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
-||+|.|.|.||..++-.+..++.. =|++-+
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~-~elvL~ 32 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVA-DDYVFI 32 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCC-SEEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCC-ceEEEE
Confidence 3899999999999998877765421 155544
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=83.18 E-value=0.46 Score=38.74 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=29.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhh
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL 113 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Ll 113 (416)
||||+.|.|.+|..+++.|.... ..+|...+- +++.+..|.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~--~~~i~v~~r--~~~~~~~l~ 41 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQG--GYRIYIANR--GAEKRERLE 41 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC--SCEEEEECS--SHHHHHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC--CCcEEEEeC--ChhHHHHhh
Confidence 58999999999999999888754 256655543 345444443
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.00 E-value=0.72 Score=38.80 Aligned_cols=90 Identities=12% Similarity=-0.011 Sum_probs=48.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
|||+|.|.|..|-.++..|.+.. .+|.-+....+.+.+..+-+ .-.+-.+... +....+.. ..+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g---~~V~l~~r~~~~~~~~~i~~-~~~~~~~~~~----------~~~~~i~~--~~~ 64 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNG---NEVRIWGTEFDTEILKSISA-GREHPRLGVK----------LNGVEIFW--PEQ 64 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHC---CEEEEECCGGGHHHHHHHHT-TCCBTTTTBC----------CCSEEEEC--GGG
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEEecccHHHHHHHhh-hhhhhhhcch----------hccccccc--ccc
Confidence 69999999999999999888654 35544543223333333321 1111111111 22222322 122
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHH
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGK 177 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~ 177 (416)
. ...-.+.|+||.|+....-++.+.+
T Consensus 65 ~---~~~~~~ad~Ii~avps~~~~~~~~~ 90 (180)
T d1txga2 65 L---EKCLENAEVVLLGVSTDGVLPVMSR 90 (180)
T ss_dssp H---HHHHTTCSEEEECSCGGGHHHHHHH
T ss_pred H---HHHHhccchhhcccchhhhHHHHHh
Confidence 2 2222467999999987666655554
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=82.98 E-value=0.57 Score=42.05 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=29.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|+|-|||-+|+.+++.|.+.. ..||+|.|.
T Consensus 31 g~~v~IqGfGnVG~~~a~~L~~~G---akvv~vsD~ 63 (242)
T d1v9la1 31 GKTVAIQGMGNVGRWTAYWLEKMG---AKVIAVSDI 63 (242)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTT---CEEEEEECS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CeEEEeecc
Confidence 469999999999999999999875 799999984
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=82.88 E-value=1.2 Score=36.27 Aligned_cols=86 Identities=12% Similarity=0.056 Sum_probs=59.3
Q ss_pred eEEEEc----cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 70 KVAING----FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 70 kVaING----fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
.|||+| -++.|..+++.|.+.. +++..+|-- .+++. +.|.+ .
T Consensus 15 sIAVVGaS~~~~k~g~~v~~~L~~~g---~~~~~v~~~---------~~~~~------------------i~g~~--~-- 60 (136)
T d1iuka_ 15 TIAVLGAHKDPSRPAHYVPRYLREQG---YRVLPVNPR---------FQGEE------------------LFGEE--A-- 60 (136)
T ss_dssp EEEEETCCSSTTSHHHHHHHHHHHTT---CEEEEECGG---------GTTSE------------------ETTEE--C--
T ss_pred eEEEEeecCCCCCchHHHHHHHhcCC---CCceEEEec---------cccce------------------eecee--c--
Confidence 699999 3899999999988865 677667621 01111 23322 1
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
..+..++| ..+|+|+-++......+-.+..++.|+|.++++...
T Consensus 61 ~~~l~~i~---~~iD~v~v~~p~~~v~~~v~~~~~~g~k~i~~q~G~ 104 (136)
T d1iuka_ 61 VASLLDLK---EPVDILDVFRPPSALMDHLPEVLALRPGLVWLQSGI 104 (136)
T ss_dssp BSSGGGCC---SCCSEEEECSCHHHHTTTHHHHHHHCCSCEEECTTC
T ss_pred ccchhhcc---CCCceEEEeccHHHHHHHHHHHHhhCCCeEEEecCc
Confidence 13455554 368999999988777777788888999988886544
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=82.82 E-value=0.47 Score=41.08 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=27.9
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+.||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G---~~V~~~~R 35 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLG---HPTYVLFR 35 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEEC
Confidence 46899999 8999999999999875 68888865
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=82.23 E-value=0.23 Score=41.66 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=22.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
.||+|.|.|.||..++..+..+.- -|++-+
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l--~el~L~ 33 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNL--GDVVLF 33 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--CEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC--CeEEEE
Confidence 599999999999999877766542 255433
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=82.08 E-value=0.8 Score=37.76 Aligned_cols=36 Identities=19% Similarity=0.063 Sum_probs=27.6
Q ss_pred ccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 157 LGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 157 ~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.|+|+||||+|.....+.+-..+..|...+++-...
T Consensus 97 ~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~ 132 (176)
T d2jhfa2 97 GGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVP 132 (176)
T ss_dssp SCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCC
T ss_pred CCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCC
Confidence 389999999999887777777777776666665543
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.50 E-value=0.62 Score=39.81 Aligned_cols=30 Identities=27% Similarity=0.629 Sum_probs=25.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|||+|.|.|.+|..++-++.+.. .+|+++-
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g---~~V~g~D 30 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARG---HEVIGVD 30 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT---CEEEEEC
T ss_pred CEEEEECCCHhHHHHHHHHHhCC---CcEEEEe
Confidence 58999999999998888887764 7887774
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=81.46 E-value=1 Score=37.15 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=20.6
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCC
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRK 91 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~ 91 (416)
++||.|.| .|.||..++-.|..++
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~ 28 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGE 28 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcc
Confidence 57999999 6999999998887653
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=81.24 E-value=0.56 Score=40.06 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=26.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.||.|-| +|.||+.+++.|++++ .+|+++..
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~G---~~V~~l~R 35 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDLG---HPTFLLVR 35 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT---CCEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEEC
Confidence 5899999 8999999999999875 68887753
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=81.22 E-value=1 Score=39.35 Aligned_cols=76 Identities=16% Similarity=0.260 Sum_probs=48.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
..||+|-|||.||+.+.+.|.+.. ..|+ +.|. +.+.+.+...++. +.+
T Consensus 27 gk~v~IqG~G~VG~~~A~~L~~~G---akvv-v~d~-d~~~~~~~~~~g~---------------------~~~------ 74 (201)
T d1c1da1 27 GLTVLVQGLGAVGGSLASLAAEAG---AQLL-VADT-DTERVAHAVALGH---------------------TAV------ 74 (201)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT---CEEE-EECS-CHHHHHHHHHTTC---------------------EEC------
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEE-Eecc-hHHHHHHHHhhcc---------------------ccc------
Confidence 368999999999999999999875 6766 4444 5555544332211 111
Q ss_pred CCCCCCCCCccccEEEcC-CCCCCCHhhHHH
Q 014890 148 NPVNLPWGDLGIDLVIEG-TGVFVDREGAGK 177 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~-TG~f~s~~~a~~ 177 (416)
+++++ | ...+||.+=| +|..++.+.+++
T Consensus 75 ~~~~~-~-~~~~DI~iPcA~~~~I~~~~a~~ 103 (201)
T d1c1da1 75 ALEDV-L-STPCDVFAPCAMGGVITTEVART 103 (201)
T ss_dssp CGGGG-G-GCCCSEEEECSCSCCBCHHHHHH
T ss_pred Ccccc-c-cccceeeecccccccccHHHHhh
Confidence 12222 3 3578988865 567778877764
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.02 E-value=0.84 Score=37.28 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=26.8
Q ss_pred ccceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 66 QAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 66 ~m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
+| .+|.|-| .|.||+.+++.|+++. ..+.|+++.
T Consensus 2 ~~-~tVlVtGatG~iG~~l~~~Ll~~g-~~v~v~~~~ 36 (252)
T d2q46a1 2 NL-PTVLVTGASGRTGQIVYKKLKEGS-DKFVAKGLV 36 (252)
T ss_dssp SC-CEEEEESTTSTTHHHHHHHHHHTT-TTCEEEEEE
T ss_pred CC-CEEEEECCccHHHHHHHHHHHHCC-CcEEEEEEc
Confidence 35 4899999 9999999999999875 246666554
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=80.83 E-value=1.5 Score=36.41 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=51.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
=+|.|.|.|.||-..+..+..... -+|+++. . +.+-+....++--+| .+...+.+.. ...+...
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~--~~Vi~~d-~-~~~kl~~a~~lGa~~-----~i~~~~~d~~-----~~~~~~~-- 92 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGA--SRIIGVG-T-HKDKFPKAIELGATE-----CLNPKDYDKP-----IYEVICE-- 92 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC--SEEEEEC-S-CGGGHHHHHHTTCSE-----EECGGGCSSC-----HHHHHHH--
T ss_pred CEEEEECCCchhHHHHHHHHHcCC--ceeeccC-C-hHHHHHHHHHcCCcE-----EEcCCCchhH-----HHHHHHH--
Confidence 379999999999999888766542 2454443 2 222222222221111 0000000000 0000000
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsa 190 (416)
....|+|+||||+|..-+.+.+-..+..|.-++++-+
T Consensus 93 -----~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG 129 (174)
T d1p0fa2 93 -----KTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLG 129 (174)
T ss_dssp -----HTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred -----hcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEE
Confidence 1124899999999987666666665555544455544
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=80.61 E-value=0.93 Score=40.48 Aligned_cols=34 Identities=32% Similarity=0.443 Sum_probs=27.9
Q ss_pred cceeEEEEccChhHHHHHHHHH-hCCCCCceEEEEecC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAINDT 103 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~-~~~~~~~~vVaINd~ 103 (416)
...||+|-|||.+|+.+++.|. +.. ..||+|.|.
T Consensus 30 ~g~~vaIqG~GnVG~~~a~~L~~e~G---a~vv~vsd~ 64 (234)
T d1b26a1 30 KKATVAVQGFGNVGQFAALLISQELG---SKVVAVSDS 64 (234)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHHC---CEEEEEEET
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcC---CceEEeecC
Confidence 3569999999999999999885 434 688999873
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=80.48 E-value=0.65 Score=37.97 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=25.2
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
|||+.|.|++|..+++.|.+. ..++..|+.
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~----g~~~~~~~~ 31 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARR----FPTLVWNRT 31 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTT----SCEEEECSS
T ss_pred eEEEEeHHHHHHHHHHHHHhC----CCEEEEeCC
Confidence 899999999999999999864 345668885
|