Citrus Sinensis ID: 014917

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
Protein Sequence
MKTKLGGRNNLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSCRGIERVQLLRRWLVALKEVERCSTSPDNNYLELDDQLNSDSPKKPTVVYFVDPDSGGGEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQWPSDEVVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDRLLLVELKQMW
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHcHHHHHHHHHHHHHHHcccccccHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mktklggrnnltrTVRSYADTVVQTAGNAVTEGAKIITdrigarnfnNFRQTAKRLEEVSVSCRGIERVQLLRRWLVALKEVercstspdnnylelddqlnsdspkkptvvyfvdpdsgggepmnfrdVFLFSQALEGITLsmileapdeEEVSLLLEIFGLCLAGGKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQYAQGAIAGLkinadlpriDAEARGLigkldkikpvqwpsdevVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKkkslrngdspeqhgvkvHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDRLLLVELKQMW
Flexible Loop (DISEMBL)
mktklggrnnltrtvrsyadtvvqtagnavtegakiitdrigarnfNNFRQTakrleevsvscrgiervQLLRRWLVALKevercstspdnnylelddqlnsdspkkPTVVYFVDPDSGGGEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQYAQGAIAglkinadlPRIDAEARGLigkldkikpvqwpsdevVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSlrngdspeqhgvkvhklkifseslvnstskaeKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEialkkvntslvttRARLRnakeereqfdeaNNKILVYFkskmscqdRLLLVELKQMW
Low Complexity Region (SEG)
MKTKLGGRNNLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSCRGIERVQLLRRWLVALKEVERCSTSPDNNYLELDDQLNSDSPKKPTVVYFVDPDSGGGEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQWPSDEVVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDRLLLVELKQMW
Disordered region (IsUnstruct)
************RTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSCRGIERVQLLRRWLVALKEVERC************************VVYFVDP****GEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQWPSDEVV**************LKETLEQIQLCSKLEDLFL********************LKI*************************ALHFRLAKCNEVCQLEKDLTVEIQELEK**DELEIALKKVNTSLVTT*****************NNKILVYFKSKMSCQDRLLLVEL****
Disordered Region (DISOPRED)
************RTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSCRGIERVQLLRRWLVALK******************************VYFVDPDSGGGEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSIQDL*********************************DLPRIDAEARG**********************************KETLEQIQLCS****************************************************************************************EIALKKVNTS**************************VYFKSKMSCQDRLLLVELKQM*
Disordered Region (DISEMBL)
MKTKLGGRNNLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSCRGIERVQLLRRWLVALKEVERCSTSPDNNYLELDDQLNSDSPKKPTVVYFVDPDSGGGEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQWPSDEVVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDRLLLVELKQMW
Disordered Region (DISPRO)
*********NLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSCRGIERVQLLRRWLVALKEVERCST****************SPKKPTVVYFVDPDSGGGEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPV*************ETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDRLLLVELKQMW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKTKLGGRNNLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSCRGIERVQLLRRWLVALKEVERCSTSPDNNYLELDDQLNSDSPKKPTVVYFVDPDSGGGEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQWPSDEVVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNNKILVYFKSKMSCQDRLLLVELKQMW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
224140123	675	predicted protein [Populus trichocarpa]	0.942	0.580	0.701	1e-151
255568074	670	conserved hypothetical protein [Ricinus	0.935	0.580	0.684	1e-148
297736434	680	unnamed protein product [Vitis vinifera]	0.963	0.589	0.617	1e-135
359486438	699	PREDICTED: uncharacterized protein LOC10	0.961	0.572	0.591	1e-131
297741525	655	unnamed protein product [Vitis vinifera]	0.947	0.601	0.662	1e-130
356536895	659	PREDICTED: uncharacterized protein LOC10	0.937	0.591	0.610	1e-127
217074440	682	unknown [Medicago truncatula]	0.949	0.579	0.606	1e-127
356536514	682	PREDICTED: uncharacterized protein LOC10	0.949	0.579	0.598	1e-126
449448928	682	PREDICTED: uncharacterized protein LOC10	0.944	0.576	0.645	1e-125
356545951	659	PREDICTED: uncharacterized protein LOC10	0.932	0.588	0.602	1e-125

>gi|224140123|ref|XP_002323435.1| predicted protein [Populus trichocarpa] gi|222868065|gb|EEF05196.1| predicted protein [Populus trichocarpa]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 282/402 (70%), Positives = 332/402 (82%), Gaps = 10/402 (2%)

Query: 4   KLGGRNNLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGA--RNFNNFRQTAKRLEEVSV 61
           ++GG+ N+TRTVRSYAD+VV  AGNAV+EGAKII DRIGA  R+  + R TAKRLE+VSV
Sbjct: 13  EVGGKTNITRTVRSYADSVVLHAGNAVSEGAKIIQDRIGASSRSLQSLRLTAKRLEDVSV 72

Query: 62  SCRGIERVQLLRRWLVALKEVER---CSTSPDNNYLELDDQLNSDSPKKPTVVYFVDPDS 118
           SCRG ERVQLLRRWLVALKE +R    S+SP   Y    D    DSPKKPT+VY+VDPD 
Sbjct: 73  SCRGEERVQLLRRWLVALKETDRERMFSSSP--TYEHHADDSFKDSPKKPTIVYYVDPDL 130

Query: 119 GGGEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSI 178
           G    M+FR+VFL+SQALEGITLSMILEAP+EEEVSLLLEIFGLCLAGGKEVH AVMSSI
Sbjct: 131 G---TMDFREVFLYSQALEGITLSMILEAPNEEEVSLLLEIFGLCLAGGKEVHKAVMSSI 187

Query: 179 QDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQW 238
           QDLAT F+TY+DEVLVKREELLQYAQ AI+GLKINAD+ RIDAEA  ++ KL+K K +  
Sbjct: 188 QDLATAFTTYEDEVLVKREELLQYAQSAISGLKINADIARIDAEAHNIMEKLEKSKALNQ 247

Query: 239 PSDEVVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKL 298
            S+E     SEETT ++ EA++E L QIQLCS LE L LKKKSLRNGDSPE H  KV KL
Sbjct: 248 LSNEASGNSSEETTALTMEAVEEKLGQIQLCSTLEALLLKKKSLRNGDSPEMHVEKVDKL 307

Query: 299 KIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDEL 358
           KI SESL+NSTSKAEKRILE R+QKE+AL+FR+AK +E+ QLEK+L+VEI+E+EKQKDEL
Sbjct: 308 KILSESLLNSTSKAEKRILEQRTQKEDALNFRVAKGDEISQLEKELSVEIREMEKQKDEL 367

Query: 359 EIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSK 400
           E  LKKVNTSL + RAR+ NA+EERE+FDEA+N+IL++ K+K
Sbjct: 368 EAELKKVNTSLNSARARIHNAREEREKFDEASNQILMHLKAK 409

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568074|ref|XP_002525013.1| conserved hypothetical protein [Ricinus communis] gi|223535675|gb|EEF37340.1| conserved hypothetical protein [Ricinus communis]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 275/402 (68%), Positives = 326/402 (81%), Gaps = 13/402 (3%)

Query: 6   GGRN-NLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSCR 64
           GG+  +LTRTVR+YAD+VV  AGNAV EGAKII  R+GA N  +FR T KRLEEVSVSCR
Sbjct: 15  GGKTTSLTRTVRNYADSVVLHAGNAVAEGAKIIQHRLGAGNSKSFRLTVKRLEEVSVSCR 74

Query: 65  GIERVQLLRRWLVALKEVERCSTSP--DNNYLELDDQLNSD----SPKKPTVVYFVDPDS 118
           GIERVQLLRRWLVALKE+ER S+S   DNN    DDQ+ SD    SP+KPT++Y+VDP+ 
Sbjct: 75  GIERVQLLRRWLVALKEIERLSSSAFSDNNS---DDQILSDESKDSPRKPTMIYYVDPEL 131

Query: 119 GGGEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSI 178
           G    MNF ++FL+SQALEGITLSMILEAP++EEVSLLLEIFGLCLAGGKEVH AVMSSI
Sbjct: 132 G---TMNFHNLFLYSQALEGITLSMILEAPNKEEVSLLLEIFGLCLAGGKEVHKAVMSSI 188

Query: 179 QDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQW 238
           QDLA+  S+YQDE+L+KREELLQYAQGAI GLKINAD+ RIDAEA  L+ KLD +K    
Sbjct: 189 QDLASALSSYQDEILIKREELLQYAQGAITGLKINADIARIDAEASSLVEKLDNMKAFHQ 248

Query: 239 PSDEVVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKL 298
             DE +++ S+ETT+  T+A ++ L QI+LCS LE L LKKKSL NGDSPE H  KV KL
Sbjct: 249 SPDEALEQSSKETTSAMTKAFEDRLGQIELCSTLEALLLKKKSLTNGDSPELHAEKVDKL 308

Query: 299 KIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDEL 358
           K+ SESL+NSTSKAE+RIL++RSQKEEAL+FR+AK  EV QLEK+L VEI+ LEKQK+EL
Sbjct: 309 KVLSESLLNSTSKAERRILDHRSQKEEALNFRVAKSGEVSQLEKELAVEIENLEKQKEEL 368

Query: 359 EIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSK 400
           E ALKKV+ SL   R RL NA+EEREQFDEA+N+ LV+ K+K
Sbjct: 369 EAALKKVSNSLNAARVRLSNAREEREQFDEASNQTLVHLKTK 410

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736434|emb|CBI25305.3| unnamed protein product [Vitis vinifera]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/410 (61%), Positives = 311/410 (75%), Gaps = 9/410 (2%)

Query: 4   KLGGRNNLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSC 63
           ++G +NNLTRTV++YAD+VVQ AG AV EGAKI+ DRIGAR++ +FR T KRLEE +VSC
Sbjct: 13  EVGNKNNLTRTVKNYADSVVQHAGQAVAEGAKILQDRIGARSYRSFRLTVKRLEEAAVSC 72

Query: 64  RGIERVQLLRRWLVALKEVERCSTSP-----DNNYLELDDQLNSDSPKKPTVVYFVDPDS 118
           RG ER+QLL+RWL  LKE+E+ S +P      N+  +       D+PKK ++V + D D 
Sbjct: 73  RGPERIQLLKRWLAVLKEIEKLSGAPFEDKEKNSEQQATTDEARDNPKKSSMVLYYDSDM 132

Query: 119 GGGEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSI 178
           GGG P+NFRDVFL SQALEGITLSMILEAP+EEEVSLLLE+F LCL GGKEVH+A++SSI
Sbjct: 133 GGG-PVNFRDVFLHSQALEGITLSMILEAPNEEEVSLLLEMFELCLTGGKEVHNAIVSSI 191

Query: 179 QDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQW 238
           QDL   FS Y+DEVLVKREELLQ+AQGAI GLKINADL RID EA  L  KLD +     
Sbjct: 192 QDLGKAFSRYEDEVLVKREELLQFAQGAITGLKINADLRRIDTEASSLKKKLDGMSLSGK 251

Query: 239 PSDEVVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKL 298
           PS E   + SEETT  + EALKE L QI++CS+LE L LKKK L +GDSPE H  KV KL
Sbjct: 252 PSSEGHLETSEETTVATIEALKEALVQIRVCSRLEGLLLKKKFLNSGDSPEVHAQKVDKL 311

Query: 299 KIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDEL 358
           K+ SESL NS++KAEKRI ++RSQKEEAL FR++K +EV ++EKDL  EI+ L+KQ+DEL
Sbjct: 312 KVLSESLANSSTKAEKRIADHRSQKEEALKFRVSKASEVSEVEKDLITEIEGLQKQRDEL 371

Query: 359 EIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDRLL 408
           E  LK+VN SL     RL N +EER QFDEA+N+I+ + K+K   +D LL
Sbjct: 372 EAELKRVNISLAAANVRLHNMREERSQFDEASNQIVTHLKTK---EDELL 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486438|ref|XP_002275939.2| PREDICTED: uncharacterized protein LOC100244989 [Vitis vinifera]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/428 (59%), Positives = 312/428 (72%), Gaps = 28/428 (6%)

Query: 5   LGGRNNLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSCR 64
           +G +NNLTRTV++YAD+VVQ AG AV EGAKI+ DRIGAR++ +FR T KRLEE +VSCR
Sbjct: 14  VGNKNNLTRTVKNYADSVVQHAGQAVAEGAKILQDRIGARSYRSFRLTVKRLEEAAVSCR 73

Query: 65  GIERVQLLRRWLVALKEVERCSTSPDNNYLELDDQLNS-----DSPKKPTVVYFVDPDSG 119
           G ER+QLL+RWL  LKE+E+ S +P  +  +  +Q  +     D+PKK ++V + D D G
Sbjct: 74  GPERIQLLKRWLAVLKEIEKLSGAPFEDKEKNSEQQATTDEARDNPKKSSMVLYYDSDMG 133

Query: 120 GGEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSIQ 179
           GG P+NFRDVFL SQALEGITLSMILEAP+EEEVSLLLE+F LCL GGKEVH+A++SSIQ
Sbjct: 134 GG-PVNFRDVFLHSQALEGITLSMILEAPNEEEVSLLLEMFELCLTGGKEVHNAIVSSIQ 192

Query: 180 DLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQWP 239
           DL   FS Y+DEVLVKREELLQ+AQGAI GLKINADL RID EA  L  KLD +     P
Sbjct: 193 DLGKAFSRYEDEVLVKREELLQFAQGAITGLKINADLRRIDTEASSLKKKLDGMSLSGKP 252

Query: 240 SDEVVDKLSEETTTVSTE-------------------ALKETLEQIQLCSKLEDLFLKKK 280
           S E   + SEETT  + E                   ALKE L QI++CS+LE L LKKK
Sbjct: 253 SSEGHLETSEETTVATIEPGIKWKGKNMNLITQFFQQALKEALVQIRVCSRLEGLLLKKK 312

Query: 281 SLRNGDSPEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQL 340
            L +GDSPE H  KV KLK+ SESL NS++KAEKRI ++RSQKEEAL FR++K +EV ++
Sbjct: 313 FLNSGDSPEVHAQKVDKLKVLSESLANSSTKAEKRIADHRSQKEEALKFRVSKASEVSEV 372

Query: 341 EKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSK 400
           EKDL  EI+ L+KQ+DELE  LK+VN SL     RL N +EER QFDEA+N+I+ + K+K
Sbjct: 373 EKDLITEIEGLQKQRDELEAELKRVNISLAAANVRLHNMREERSQFDEASNQIVTHLKTK 432

Query: 401 MSCQDRLL 408
              +D LL
Sbjct: 433 ---EDELL 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741525|emb|CBI32657.3| unnamed protein product [Vitis vinifera]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 265/400 (66%), Positives = 315/400 (78%), Gaps = 6/400 (1%)

Query: 6   GGRNNLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSCRG 65
           GG  NL RTVR+YAD+VVQ AG AV EGAK++ DRIG +N  +FR T + LEEVSVSCRG
Sbjct: 15  GGNTNLPRTVRNYADSVVQQAGFAVAEGAKLLQDRIGMQNIKSFRHTVRNLEEVSVSCRG 74

Query: 66  IERVQLLRRWLVALKEVERC-STSPDNNYLEL---DDQLNS-DSPKKPTVVYFVDPDSGG 120
           +ER+QLLRRWLVALKE+ER      D+N  +L   D    S DSP KPT++ + DPD G 
Sbjct: 75  LERIQLLRRWLVALKEIERILGNYYDDNEKDLVQNDTPAESKDSPGKPTLIMYYDPDLGD 134

Query: 121 GEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSIQD 180
            EP+NFRDVFL SQALEGITLSMILEAP +EEVSLLLE+FGLCL GGKEVH+A++SSIQD
Sbjct: 135 -EPVNFRDVFLHSQALEGITLSMILEAPKDEEVSLLLELFGLCLTGGKEVHNAIISSIQD 193

Query: 181 LATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQWPS 240
           LA VFS Y+DEVLVKREELLQYAQ AIAGLK+NAD+ RIDAE      KLD++K  Q PS
Sbjct: 194 LAQVFSDYEDEVLVKREELLQYAQAAIAGLKVNADIVRIDAEYSSAQKKLDRMKASQQPS 253

Query: 241 DEVVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKLKI 300
           +E  DK S+E+T  + EALKE L QI LCS++E L LKKKSLR GDSPE H  KV+KLKI
Sbjct: 254 NEGNDKSSQESTVETREALKEALAQILLCSQVEALLLKKKSLRTGDSPEVHAEKVNKLKI 313

Query: 301 FSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEI 360
            SESL++STSKAE RIL+NR QKEEAL+FR+AK  E+ QLEK+LTVEI  LE+Q+DE E 
Sbjct: 314 LSESLISSTSKAENRILDNRYQKEEALNFRVAKDTEINQLEKELTVEIGALERQRDEFEA 373

Query: 361 ALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSK 400
            LKKVN SL   RARL NA+EE EQF EA+N+I+++ K++
Sbjct: 374 ELKKVNASLAAARARLHNAREESEQFAEASNQIVIHLKAR 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536895|ref|XP_003536968.1| PREDICTED: uncharacterized protein LOC100800057 [Glycine max]

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/401 (61%), Positives = 303/401 (75%), Gaps = 11/401 (2%)

Query: 6   GGRNNLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSCRG 65
           GG+ N+ R VR+YAD+V+  A NAV  GA+II DRI ARN  NF+ T KRLEEVSVSCRG
Sbjct: 14  GGQRNIGRAVRTYADSVMVHASNAVAGGARIIQDRIVARNMQNFKHTVKRLEEVSVSCRG 73

Query: 66  IERVQLLRRWLVALKEVERCS-TSPDNNYLELDDQLNSDSPK-----KPTVVYFVDPDSG 119
           IERVQLLRRWLVAL+EVER + T  D+N  + D++  +D  K     +PT++Y+VDP + 
Sbjct: 74  IERVQLLRRWLVALREVERLTLTRTDSNAKDQDNEFLNDESKDLPTQQPTLIYYVDP-AA 132

Query: 120 GGEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSIQ 179
            GE  NF DVFL SQALEGI+LSMIL+AP+EEEVSLL EI+GLC+ GGKE H+A++SS+Q
Sbjct: 133 PGELKNFGDVFLSSQALEGISLSMILDAPNEEEVSLLSEIYGLCIKGGKEEHTALLSSVQ 192

Query: 180 DLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQWP 239
           +LA  FS Y+DEVL KREELLQY Q AI+GLK+NADL  I+ EA  L  K++ +K V   
Sbjct: 193 ELAKAFSGYEDEVLAKREELLQYVQCAISGLKVNADLMSIEVEACKLKEKIENMKAV--- 249

Query: 240 SDEVVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKLK 299
            +E  + ++   +TV+ EAL E +E+IQ+CS LE+L LKKK    GDSP+ H  KV KLK
Sbjct: 250 -NEDGNFVNSPKSTVAIEALDEAMEKIQMCSTLEELLLKKKYFSYGDSPQLHAEKVDKLK 308

Query: 300 IFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELE 359
           + SESLVNST+KAE  I ENRSQKEEALHFR+ K NEV Q+EK+L VEI ELEKQKDELE
Sbjct: 309 LLSESLVNSTTKAETHISENRSQKEEALHFRVTKSNEVSQVEKELAVEIGELEKQKDELE 368

Query: 360 IALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSK 400
             LKKVN+ L + R RL NAKEEREQFDEA+ +I+   K+K
Sbjct: 369 DRLKKVNSLLTSARMRLHNAKEEREQFDEASKEIIALLKTK 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074440|gb|ACJ85580.1| unknown [Medicago truncatula]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/402 (60%), Positives = 304/402 (75%), Gaps = 7/402 (1%)

Query: 4   KLGGRNNLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSC 63
           ++G +NNLT TV+ YADTVVQ AG AV EGAKI+ DRI ARN+ +  QT KRLEE ++S 
Sbjct: 14  EVGNKNNLTNTVKKYADTVVQHAGQAVAEGAKILHDRISARNYRSVAQTVKRLEEAAISH 73

Query: 64  RGIERVQLLRRWLVALKEVERCS-TSPDNNYLELDDQLN----SDSPKKPTVVYFVDPDS 118
           RG ERVQLLRRWLV LKE+E  S  S +     L+  L      ++P++P++V + D D 
Sbjct: 74  RGPERVQLLRRWLVVLKEIENLSGASAEGKEKTLEQHLAVEDIKENPQRPSLVLYYDSDV 133

Query: 119 GGGEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSI 178
           GG EP+NFRDVFL SQALEGITLSMI+EAP+EEEVSLLLE+FGLCL G KEVH+A++SS+
Sbjct: 134 GG-EPLNFRDVFLQSQALEGITLSMIIEAPNEEEVSLLLEMFGLCLTGRKEVHNAIVSSL 192

Query: 179 QDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQW 238
           QDLAT FS+YQDEVLVKREELLQ+AQ AI GLKIN+DL RIDAEA  L  KL +I   Q 
Sbjct: 193 QDLATAFSSYQDEVLVKREELLQFAQRAITGLKINSDLARIDAEASSLRKKLSEITTSQG 252

Query: 239 PSDEVVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKL 298
             ++V  K +EE T  + +ALK  L QI++CS+LE L LKKK++ NGDSPE H  KV KL
Sbjct: 253 VVNKVDYKAAEE-TEATLKALKVALGQIRICSRLEGLLLKKKNISNGDSPEVHAQKVDKL 311

Query: 299 KIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDEL 358
           K+ +ESLVNS +KAEKRI +NR QKEEAL  R+ K  E  + EK+LT EI EL+++KD+L
Sbjct: 312 KVLTESLVNSAAKAEKRISDNRQQKEEALKVRVTKGGETSEKEKELTAEISELQQKKDDL 371

Query: 359 EIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSK 400
           E  LKK+NTSL   +ARL N +EER+QF+EANN+I+ + K K
Sbjct: 372 EAELKKINTSLAAAQARLWNVREERDQFEEANNQIVEHLKIK 413

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536514|ref|XP_003536782.1| PREDICTED: uncharacterized protein LOC100778459 [Glycine max]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/403 (59%), Positives = 305/403 (75%), Gaps = 8/403 (1%)

Query: 4   KLGGRNNLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSC 63
           ++G +NNLTRTV++YADTVVQ AG AV EGAKI+ DRI ARN+ +  QT KRLEE +VS 
Sbjct: 14  EVGNKNNLTRTVKNYADTVVQHAGQAVAEGAKILQDRISARNYRSVAQTIKRLEEAAVSY 73

Query: 64  RGIERVQLLRRWLVALKEVERCSTS--PDNNYLELDDQLN----SDSPKKPTVVYFVDPD 117
           RG ERVQLLRRW+V L+E+++ S +   +     L+  L      ++P+KP++V + D D
Sbjct: 74  RGPERVQLLRRWVVVLQEIQKLSEASLAEGKERTLEQHLAVEEAKENPRKPSLVLYYDSD 133

Query: 118 SGGGEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSS 177
            GG EP+NFRDVFL SQALEGITLSMI+ AP+EEEVSLLLE+FGLCL GGKEVH+A++SS
Sbjct: 134 VGG-EPLNFRDVFLQSQALEGITLSMIIHAPNEEEVSLLLEMFGLCLTGGKEVHNAIVSS 192

Query: 178 IQDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQ 237
           +QDLAT FS+Y+DEVLVK+EELLQ+AQGAI GLKIN+D  RIDAEA  L  KL +I   Q
Sbjct: 193 LQDLATAFSSYEDEVLVKQEELLQFAQGAITGLKINSDASRIDAEASNLKKKLTEITTSQ 252

Query: 238 WPSDEVVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHK 297
            P  +V  K +EE T  + EALK  L QI++CS+LE L LKKK+L NGDSPE H  KV K
Sbjct: 253 GPVSKVDYKAAEE-TIATLEALKIALAQIRICSRLEALLLKKKNLSNGDSPEIHAQKVDK 311

Query: 298 LKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDE 357
           LK+ +ESL NS +KAEKRIL+NR QKEEAL  R+ K  E  + EK+L  EI EL+ +K++
Sbjct: 312 LKVLTESLANSATKAEKRILDNRLQKEEALKVRVTKDGEASEKEKELVTEISELQCKKED 371

Query: 358 LEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSK 400
           LE  LKKV+T+L   +ARL N +EER+QF+EANN+I+ + K K
Sbjct: 372 LEAELKKVSTTLAAAQARLWNVREERDQFEEANNQIVEHLKIK 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448928|ref|XP_004142217.1| PREDICTED: uncharacterized protein LOC101209774 [Cucumis sativus]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 258/400 (64%), Positives = 302/400 (75%), Gaps = 7/400 (1%)

Query: 6   GGRNNLTRTVRSYADTVVQTAGNAVTE-GAKIITDRIGARNFNNFRQTAKRLEEVSVSCR 64
           GG++N+TRTVR+ A TVV  AGNAV E GAKII DRIG RN   F+QT KRLEE+S+S R
Sbjct: 17  GGKDNITRTVRNVAGTVVYHAGNAVVEEGAKIIQDRIGPRNMQGFKQTVKRLEEISISSR 76

Query: 65  GIERVQLLRRWLVALKEVERCSTSP-DNNYLELDDQLNS---DSPKKPTVVYFVDPDSGG 120
           GIERVQLLRRWLVALKEV+R S  P ++      DQLN    DSPKKPT+VY+VDPD GG
Sbjct: 77  GIERVQLLRRWLVALKEVDRFSLGPIEDGKNSPTDQLNEENRDSPKKPTLVYYVDPDMGG 136

Query: 121 GEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSIQD 180
            E   FRDVFL SQALEGITLSMILE P++EE SLLLEI+GLCL+GGKEV  AVM+S+ +
Sbjct: 137 -ELKTFRDVFLTSQALEGITLSMILEEPNDEEESLLLEIYGLCLSGGKEVRQAVMTSVHN 195

Query: 181 LATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQWPS 240
           LA  FS YQDE+LVKREELLQY Q AIAGLKINAD  RIDA+A  L   LD+      PS
Sbjct: 196 LAKAFSEYQDEILVKREELLQYVQDAIAGLKINADFDRIDAKACSLKETLDENHEELPPS 255

Query: 241 DEVVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKLKI 300
            E  D  S+  T  S + L+E L Q+QLCSKLE+L LKKK  ++GDSP+ H  KV KL+I
Sbjct: 256 REDQDTTSDGETRAS-KILQEILSQVQLCSKLEELLLKKKLFKDGDSPQLHAEKVEKLRI 314

Query: 301 FSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEI 360
            SESL NST KAEKRI+++R QKEEAL+FR+AK  E+ Q EK+LT +I ELE QKD LE 
Sbjct: 315 LSESLANSTLKAEKRIVDHREQKEEALNFRVAKSKEMVQAEKELTDDIGELENQKDRLEA 374

Query: 361 ALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSK 400
            LKKVNT L   R RL NA+EERE FDEA+N+ILV+ K+K
Sbjct: 375 ELKKVNTLLSAARMRLHNAREEREHFDEASNQILVHLKTK 414

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545951|ref|XP_003541396.1| PREDICTED: uncharacterized protein LOC100795353 [Glycine max]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/403 (60%), Positives = 296/403 (73%), Gaps = 15/403 (3%)

Query: 6   GGRNNLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSCRG 65
           GG++N  R VR+YAD+VV  A NAV  GA+II DRI ARN  +F+ T KRLEEVSVSCRG
Sbjct: 14  GGQSNFGRAVRTYADSVVLHASNAVAGGARIIQDRIVARNMQSFKHTVKRLEEVSVSCRG 73

Query: 66  IERVQLLRRWLVALKEVERCSTS--------PDNNYLELDDQLNSDSPKKPTVVYFVDPD 117
           IERVQLLRRWLVAL+EVER + +         DN +L  D+  +S +P+ PT++Y+VDP 
Sbjct: 74  IERVQLLRRWLVALREVERLTVTCNGTKAKDQDNEFLH-DESKDSPTPQ-PTLIYYVDP- 130

Query: 118 SGGGEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSS 177
           +   E  NFRDVFL SQALEGIT+SMIL+AP+EEEVSLL EI+GLC+ GGKE H+A++SS
Sbjct: 131 AAPDELKNFRDVFLSSQALEGITMSMILDAPNEEEVSLLSEIYGLCIKGGKEEHTALLSS 190

Query: 178 IQDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQ 237
           +QDLA  FS Y+ EVL KREELLQY Q AI+GLK+NADL RI+ EA  L  K++ +K   
Sbjct: 191 VQDLAKAFSGYEVEVLAKREELLQYVQNAISGLKVNADLIRIEVEACNLKEKIENMKADS 250

Query: 238 WPSDEVVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHK 297
              + V    +    T + EAL E +  IQ+CS LE+L LKKK    GDSP+ H  KV K
Sbjct: 251 QDGNFV----NSPKATAAIEALDEAMVTIQMCSTLEELLLKKKYFSYGDSPQLHAEKVDK 306

Query: 298 LKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDE 357
           LK+ SESL NS++KAE RI ENRSQKEEALHFR+ K NEV Q+EK+L VEI ELEKQKDE
Sbjct: 307 LKVLSESLANSSTKAETRITENRSQKEEALHFRVTKSNEVSQVEKELAVEIGELEKQKDE 366

Query: 358 LEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSK 400
           LE  LKKVN  L + R RL NAKEEREQFDEA+N+I+   K+K
Sbjct: 367 LEDRLKKVNNLLTSARVRLHNAKEEREQFDEASNEIIALLKTK 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
TAIR|locus:2049821	669	AT2G37370 "AT2G37370" [Arabido	0.939	0.584	0.635	2.1e-123
TAIR|locus:2173164	679	AT5G13560 [Arabidopsis thalian	0.947	0.580	0.587	1.5e-113
UNIPROTKB|Q5VXJ5	792	SYCP1 "Synaptonemal complex pr	0.396	0.208	0.298	1.6e-05
UNIPROTKB|E1BLN1	998	LOC525413 "Uncharacterized pro	0.360	0.150	0.315	1.6e-05
UNIPROTKB|Q15431	976	SYCP1 "Synaptonemal complex pr	0.396	0.169	0.298	2e-05
ZFIN|ZDB-GENE-101124-2	1972	myh11b "myosin, heavy polypept	0.495	0.104	0.280	2.1e-05
ZFIN|ZDB-GENE-100922-148	946	tbc1d2b "TBC1 domain family, m	0.555	0.244	0.284	5.3e-05
UNIPROTKB|F1SBS3	1002	SYCP1 "Uncharacterized protein	0.362	0.150	0.301	0.00016
ZFIN|ZDB-GENE-081104-431	627	lzts1 "leucine zipper, putativ	0.497	0.330	0.268	0.00018
UNIPROTKB|I3L5B3	1358	LOC100621981 "Uncharacterized	0.372	0.114	0.263	0.00037

TAIR|locus:2049821 AT2G37370 "AT2G37370" [Arabidopsis thaliana (taxid:3702)]

 Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
 Identities = 255/401 (63%), Positives = 315/401 (78%)

Query:     4 KLGGRNNLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSC 63
             ++GG+NN+TRTVR+YAD+VV TAGNAV+EGAK+I DRIG+RN  +F    KRLEEVSVS 
Sbjct:    13 EVGGKNNITRTVRNYADSVVLTAGNAVSEGAKLIQDRIGSRNVKSFSLAVKRLEEVSVSS 72

Query:    64 RGIERVQLLRRWLVALKEVERCSTSP-DNNYLELDDQLNS-DSPKKPTVVYFVDPDSGGG 121
             RG ERVQLLRRWLVAL+E+ER S S  DNN  + DD   S DSPK  + VY+VDP   G 
Sbjct:    73 RGSERVQLLRRWLVALREIERMSYSCFDNNNHKTDDHTQSEDSPKNFSTVYYVDPGLPG- 131

Query:   122 EPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSIQDL 181
             EPM FRDVFL S+ALEG+ LSMILEAP+EEEV LLLE+FGLCL+G KEVH AV+ ++QDL
Sbjct:   132 EPMTFRDVFLHSEALEGMVLSMILEAPNEEEVQLLLELFGLCLSGEKEVHEAVIQNVQDL 191

Query:   182 ATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDK--IKPVQWP 239
             ATVF  Y+DEVL KREELLQY QGAI GLK++AD+ RID EA  L+ KLDK  +K ++  
Sbjct:   192 ATVFLKYKDEVLAKREELLQYVQGAIGGLKLSADIARIDIEAHTLMEKLDKTKVKVLEHA 251

Query:   240 SDEVVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKLK 299
             S E   K     T  STEAL+E LEQ++  SKLE L L+KKSL NGD+ ++H  KV KLK
Sbjct:   252 SSEDASK-----TAASTEALREILEQVRTFSKLEALLLRKKSLHNGDTLQRHIEKVDKLK 306

Query:   300 IFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELE 359
             + SESL+NSTSKAEKRI+++RSQKEEAL +R++K  EV QLEKD+  E+++LE  K++LE
Sbjct:   307 VLSESLLNSTSKAEKRIMDHRSQKEEALSYRVSKTTEVGQLEKDVAAELKKLEILKEDLE 366

Query:   360 IALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSK 400
               LK+VNTS+ + RARLRNA+EEREQFD A+N+IL++ KSK
Sbjct:   367 AELKRVNTSITSARARLRNAQEEREQFDNASNEILMHLKSK 407

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2173164 AT5G13560 [Arabidopsis thaliana (taxid:3702)]

 Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
 Identities = 234/398 (58%), Positives = 295/398 (74%)

Query:     4 KLGGRNNLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSC 63
             ++G R N+TRTV++YAD+VVQ AG AV EGAK+  DRIG   + +  QT +RLEE +VS 
Sbjct:    13 EVGNRKNITRTVKNYADSVVQHAGQAVAEGAKLFQDRIGVGAYKSVHQTIQRLEEAAVSY 72

Query:    64 RGIERVQLLRRWLVALKEVERCSTSP-DNNYLELDDQLNSDSPKKPTVVYFVDPDSGGGE 122
             RG ER  L+ RWL  LKE++R + S   +  L  ++QL SD  KK   V + DPD GG E
Sbjct:    73 RGQERALLITRWLSVLKEIDRATDSSLKDKQLSSEEQLASDEAKKREWVLYYDPDIGG-E 131

Query:   123 PMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSIQDLA 182
             P+NFRDVFL SQALEGI LSMI+E P +EE++LLLE+FGLCL GGKEVH A++SS+QDLA
Sbjct:   132 PLNFRDVFLQSQALEGIVLSMIIEPPHDEEITLLLEMFGLCLNGGKEVHDAIVSSMQDLA 191

Query:   183 TVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQWPSDE 242
             TVFS+Y+DEVLVK++ELLQ+AQ AI GLKINA++ RIDAEA  L  KL+K+   Q P  E
Sbjct:   192 TVFSSYKDEVLVKQDELLQFAQNAITGLKINAEMLRIDAEASDLRKKLEKMNASQIPQ-E 250

Query:   243 VVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKLKIFS 302
               DK  +ET  ++ EA KETL +I+LCS+LE L ++K+ L NGDSP+ H  KV KL++  
Sbjct:   251 SEDKEHKETP-LTIEAFKETLAKIRLCSRLEGLLIRKRQLSNGDSPDIHAQKVDKLRVLL 309

Query:   303 ESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIAL 362
             ESL NSTSKAEKRI ENR QKEEAL  R+ K NE  + EK+L  EI +LEKQ+DELE  L
Sbjct:   310 ESLANSTSKAEKRISENRLQKEEALKARVVKANETGEKEKELGAEIAQLEKQRDELEADL 369

Query:   363 KKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSK 400
             K+VN SL   +AR RNA EER+QF EANN+I+ + K+K
Sbjct:   370 KRVNLSLAAAQARFRNATEERDQFGEANNQIIAHLKTK 407

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q5VXJ5 SYCP1 "Synaptonemal complex protein 1" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 54/181 (29%), Positives = 96/181 (53%)

Query:   229 KLDKIKPVQWPSDEVVDKLS--EETTTVSTEALKETLE-QIQLCSKLEDLFLKKKSLRNG 285
             K +K+K + +  +E  DK++  EE T + +E LK+++E Q  L  +LED+   K SL+  
Sbjct:   278 KENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDI---KVSLQRS 334

Query:   286 DSPEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALH-FRLAKCNE-VCQLEKD 343
              S ++       L+I ++++   T + E ++ E  S K  A H F + +    VC LE+ 
Sbjct:   335 VSTQK--ALEEDLQIATKTICQLTEEKETQMEE--SNKARAAHSFVVTEFETTVCSLEEL 390

Query:   344 LTVEIQELEKQKDELEIALKKVN--TSLVTTRARLRNAKE-EREQFDEA-NNKILVYFKS 399
             L  E Q LEK +D+L+I   ++   +S +    +L N KE E E+  +    K  + +++
Sbjct:   391 LRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYEN 450

Query:   400 K 400
             K
Sbjct:   451 K 451

GO:0000801 "central element" evidence=IEA

GO:0000802 "transverse filament" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0007130 "synaptonemal complex assembly" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

UNIPROTKB|E1BLN1 LOC525413 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 136 (52.9 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 52/165 (31%), Positives = 87/165 (52%)

Query:   229 KLDKIKPVQWPSDEVVDKLS--EETTTVSTEALKETLE-QIQLCSKLEDLFLKKKSLRNG 285
             K +K+K + +  +E  +K++  EE T +  E LKE+ E Q  L S+LED+   K SL+  
Sbjct:   279 KENKMKELTFLLEESRNKINQLEEKTKLQNENLKESNEKQDHLTSELEDI---KMSLQRS 335

Query:   286 DSPEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAK--CNEVCQLEKD 343
              + +        L+I ++++   T + E ++ E    K +A H  +       +C L+K 
Sbjct:   336 VNTQM--ALEEDLQIATKNIYQLTGEKEAQMEE--FNKAKAAHSSMVTELKTTICNLKKL 391

Query:   344 LTVEIQELEKQKDELEIALKKVN--TSLVTTRARLRNAKE-EREQ 385
             LT E Q LEK +DEL+I   K+   +S +    +L+N KE E E+
Sbjct:   392 LTTEQQRLEKSEDELKILTMKLQKKSSELEEMTKLKNNKEVELEE 436

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0007130 "synaptonemal complex assembly" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0000802 "transverse filament" evidence=IEA

GO:0000801 "central element" evidence=IEA

UNIPROTKB|Q15431 SYCP1 "Synaptonemal complex protein 1" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 54/181 (29%), Positives = 96/181 (53%)

Query:   229 KLDKIKPVQWPSDEVVDKLS--EETTTVSTEALKETLE-QIQLCSKLEDLFLKKKSLRNG 285
             K +K+K + +  +E  DK++  EE T + +E LK+++E Q  L  +LED+   K SL+  
Sbjct:   278 KENKMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDI---KVSLQRS 334

Query:   286 DSPEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALH-FRLAKCNE-VCQLEKD 343
              S ++       L+I ++++   T + E ++ E  S K  A H F + +    VC LE+ 
Sbjct:   335 VSTQK--ALEEDLQIATKTICQLTEEKETQMEE--SNKARAAHSFVVTEFETTVCSLEEL 390

Query:   344 LTVEIQELEKQKDELEIALKKVN--TSLVTTRARLRNAKE-EREQFDEA-NNKILVYFKS 399
             L  E Q LEK +D+L+I   ++   +S +    +L N KE E E+  +    K  + +++
Sbjct:   391 LRTEQQRLEKNEDQLKILTMELQKKSSELEEMTKLTNNKEVELEELKKVLGEKETLLYEN 450

Query:   400 K 400
             K
Sbjct:   451 K 451

GO:0003677 "DNA binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000801 "central element" evidence=IEA

GO:0000802 "transverse filament" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0007131 "reciprocal meiotic recombination" evidence=TAS

GO:0007283 "spermatogenesis" evidence=TAS

GO:0007130 "synaptonemal complex assembly" evidence=ISS

ZFIN|ZDB-GENE-101124-2 myh11b "myosin, heavy polypeptide 11, smooth muscle b" [Danio rerio (taxid:7955)]

 Score = 138 (53.6 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 64/228 (28%), Positives = 111/228 (48%)

Query:   175 MSSIQDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKL-DKI 233
             M ++Q L     T Q    ++ +EL Q +  A +  K NA L +I  E  GL+ +L D++
Sbjct:  1055 MKNLQTLIAELKTQQARSEMEIQEL-QASVEAESTQKSNA-LKKIH-EMEGLLSELQDEL 1111

Query:   234 KPVQWP---SDEVVDKLSEETTTVSTE---ALKETLEQIQLCSKLE-DLFLKKKSLRNGD 286
             +  Q     S++   +L EE + + TE   +L  T  Q +L +K E ++ + KK +   D
Sbjct:  1112 EAEQGAGRKSEKARKELEEELSALRTELEDSLDTTAVQQELRAKREQEVAMLKKLIE--D 1169

Query:   287 SPEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEK-DLT 345
                 H  +VH+LK      V+  S+     L+ +S++ +A    L K  +  + E  DL 
Sbjct:  1170 EGRSHEAQVHELKQKHAQAVDELSQQ----LD-QSKRAKAT---LEKAKQALEKEVGDLN 1221

Query:   346 VEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKI 393
               ++ L   K +LE   KKV T L   + R   ++ +RE+  +A +K+
Sbjct:  1222 GNLRSLGNAKQDLEQKKKKVETQLADLQTRFNESERKREELGDAVSKL 1269

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-100922-148 tbc1d2b "TBC1 domain family, member 2B" [Danio rerio (taxid:7955)]

 Score = 131 (51.2 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 72/253 (28%), Positives = 111/253 (43%)

Query:   167 GKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGL 226
             GK  HSA  S ++   T  S  Q  +  ++EE+ Q  +      K+  +L     E   L
Sbjct:   296 GKPNHSAESSPVEYNETKISKLQLRIQSQQEEISQLQEQEN---KLREELGS-QKELVRL 351

Query:   227 IGKLDKIKPVQWPSDEVVDKLSEETTTVSTEALKETLEQIQ-LCSKLEDLFLKKKSLRNG 285
             + K  +     WPS         E   V  +AL E   QI+ LCS +E L L+K+SL+  
Sbjct:   352 LQKTLRSAQCDWPSTVGPHNHYLEENEVD-KALTERDTQIKDLCSHMEKLALEKESLQQ- 409

Query:   286 DSPEQHGVKVHKLKIFSESL--VNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKD 343
                E  G+K+ K+   +E L  +  T +A+  ++   SQ       + A+CN        
Sbjct:   410 ---ELKGLKI-KVGEINEQLGMLMETIQAKDEVIMKLSQPSGEGETQSAECNS-----PS 460

Query:   344 LTVEIQELEKQKDELE---IALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSK 400
             +T E QEL   KD L+      K +N  ++      RNA E RE+  EA    L     +
Sbjct:   461 VTREQQELNTLKDSLQGYKSQNKFLNKEIIELTVLRRNA-ESREKLLEAKYNSLEAKLCQ 519

Query:   401 MSCQDRLLLVELK 413
             +  +  +LL E+K
Sbjct:   520 VESKYLVLLQEVK 532

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|F1SBS3 SYCP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 127 (49.8 bits), Expect = 0.00016, P = 0.00016
 Identities = 50/166 (30%), Positives = 87/166 (52%)

Query:   231 DKIKPVQWPSDEVVDKLS--EETTTVSTEALKETLE-QIQLCSKLEDLFLKKKSLRNGDS 287
             +K+K + +  +E  +K++  EE T +  E LKE+ E Q  L S+LED+   K SL+    
Sbjct:   281 NKMKDLTFLLEESRNKVNQLEEKTKLQNENLKESNEKQDHLTSELEDI---KISLQRSVG 337

Query:   288 PEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALH-FRLAKCNE-VCQLEKDLT 345
              ++       L+I ++ +   T + E ++ E    K +A H F + + N  +C L++ LT
Sbjct:   338 TQK--AFEEDLQIATKKIYQLTGEKEAQMEE--FNKAKASHSFVVTELNTTICNLKELLT 393

Query:   346 VEIQELEKQKDELEIALKKVNTSL--VTTRARLRNAKE-EREQFDE 388
              E Q LEK +DEL++   ++      +    +L+N KE E E+  E
Sbjct:   394 TEQQRLEKSEDELKVLTMELQKKACELEEMTKLKNNKEVELEEMKE 439

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0007130 "synaptonemal complex assembly" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0000802 "transverse filament" evidence=IEA

GO:0000801 "central element" evidence=IEA

ZFIN|ZDB-GENE-081104-431 lzts1 "leucine zipper, putative tumor suppressor 1" [Danio rerio (taxid:7955)]

 Score = 124 (48.7 bits), Expect = 0.00018, P = 0.00018
 Identities = 63/235 (26%), Positives = 104/235 (44%)

Query:   176 SSIQDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGK-LDKIK 234
             S + +L T     + +     EE  +Y    + GLK            R +  + L +++
Sbjct:   279 SELAELQTSLEEKETDTCQLFEEKQRYCAEEMEGLKQRCSTKLRQVSQRAVKAQQLLQLQ 338

Query:   235 PVQWPSD-----EVVDKLSEETTTVST-----EALKE---TLEQIQ--LCSKLEDLFLKK 279
              +Q   D     E VD+L+ +  T  +     E+ K    TLE+ Q  +C K  ++ L K
Sbjct:   339 VIQLQQDKDRLQEEVDQLNRDRDTAESRIRIYESQKNLVPTLEETQWEVCQKSGEISLLK 398

Query:   280 KSLRNGDSPEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQK-EEALHFRLAKCNEVC 338
             + LR  DS    G K+ ++     SL  S  K E+  LE + ++ EE LH R A   EV 
Sbjct:   399 QQLR--DSQTDAGNKLSEIVTLKASLKESRCKMEE--LEQKIKECEETLHQRSA---EV- 450

Query:   339 QLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKI 393
             ++ K+   E Q  + + D L   + K+ T +   +  L  AKEE++Q      K+
Sbjct:   451 EVSKN---EFQRKKNEADLLREKVNKLETDIKGMKQDLHMAKEEQQQLMAMRAKV 502

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|I3L5B3 LOC100621981 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 125 (49.1 bits), Expect = 0.00037, P = 0.00037
 Identities = 45/171 (26%), Positives = 81/171 (47%)

Query:   244 VDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKLKIFSE 303
             V +  EE      E LK   +Q ++  +LE++  K + L      E+  +   +L+  +E
Sbjct:   226 VTRQEEELQAKDEELLKVKEKQTKVEGELEEMERKHQQLL-----EEKNILAEQLQAETE 280

Query:   304 SLVNSTSKAEKRILENRSQKEEALHFRLAKC------NEVCQLEKD-LTVEIQELEKQKD 356
              L     +   R+   + + EE LH   ++       N++ Q EK  +   IQ+LE+Q D
Sbjct:   281 -LFAEAEEMRARLAAKKQELEEILHDLESRVEEEEERNQILQNEKKKMQAHIQDLEEQLD 339

Query:   357 ELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDRL 407
             E E A +K+    VT  A+++  +EE    ++ N+K   + K K   +DR+
Sbjct:   340 EEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSK---FIKEKKLMEDRI 387

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00160743 hypothetical protein (675 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	416
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	91.49
PRK11637	428	AmiB activator; Provisional	88.82
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	88.74
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	87.73
PRK09039	343	hypothetical protein; Validated	86.38
PF09177	97	Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP	84.34
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	83.31
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	82.26
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	81.88
smart00338	65	BRLZ basic region leucin zipper.	81.47
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	81.39
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	80.7
PF06428	100	Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IP	80.32
PRK11281	1113	hypothetical protein; Provisional	80.22

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=91.49  E-value=7.5  Score=44.62  Aligned_cols=67  Identities=18%  Similarity=0.255  Sum_probs=44.1

Q ss_pred             cCcHHHHHHHHHhHHHHHHhccccchhhccChHHHHHHHHhhhhccccCCcchhchHHHHHHHhhhhhcC
Q 014917          165 AGGKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIK  234 (416)
Q Consensus       165 ~GGkevh~Ai~ssiqdLA~aFs~y~DEVlvkReELLq~aQ~AIsGLK~nAdi~RiD~Ea~~L~~kl~~~~  234 (416)
                      ....+-|..+...++...+.-..++.++--.++++..+ |.....++.  .+..++.++..++.+++...
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~-~~~~~~~~~--~~~~le~~~~~~~~~~~~~~  315 (1163)
T COG1196         249 SRLEEELEELQEELEEAEKEIEELKSELEELREELEEL-QEELLELKE--EIEELEGEISLLRERLEELE  315 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666666666666666655566666666 766666665  67777777777777776655

>PRK11637 AmiB activator; Provisional

Probab=88.82  E-value=7.5  Score=39.51  Aligned_cols=15  Identities=20%  Similarity=0.372  Sum_probs=6.4

Q ss_pred             hhHHHHHHhhhHhhh
Q 014917          309 TSKAEKRILENRSQK  323 (416)
Q Consensus       309 tskAEkRI~d~R~QK  323 (416)
                      ....++.|.+...++
T Consensus        56 i~~~~~~i~~~~~~~   70 (428)
T PRK11637         56 IAAKEKSVRQQQQQR   70 (428)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334444444443333

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=88.74  E-value=8.3  Score=35.96  Aligned_cols=79  Identities=23%  Similarity=0.345  Sum_probs=50.7

Q ss_pred             HhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHh--------hHHHHHhHHHHHH
Q 014917          320 RSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRN--------AKEEREQFDEANN  391 (416)
Q Consensus       320 R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~--------~rEERdqFdEAnn  391 (416)
                      ..+-+.+..|=+.|.-+....-.++..+|..|++.+.+|+.++..+.........+...        ..+|=+.+...|.
T Consensus       101 ~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~  180 (189)
T PF10211_consen  101 QTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQ  180 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666666555555556777788888888888888888777777666555443        3444455666666


Q ss_pred             HHHHHHh
Q 014917          392 KILVYFK  398 (416)
Q Consensus       392 qIi~~Lk  398 (416)
                      |+-.+|+
T Consensus       181 ql~~~l~  187 (189)
T PF10211_consen  181 QLKAQLE  187 (189)
T ss_pred             HHHHHHh
Confidence            6666654

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>TIGR00606 rad50 rad50

Probab=87.73  E-value=48  Score=38.79  Aligned_cols=26  Identities=15%  Similarity=0.151  Sum_probs=18.8

Q ss_pred             cccCCcchhchHHHHHHHhhhhhcCC
Q 014917          210 LKINADLPRIDAEARGLIGKLDKIKP  235 (416)
Q Consensus       210 LK~nAdi~RiD~Ea~~L~~kl~~~~~  235 (416)
                      ++.-.+|.|+..++..|+++|+....
T Consensus       788 ~~~v~~i~r~~~ei~~l~~qie~l~~  813 (1311)
T TIGR00606       788 LTDVTIMERFQMELKDVERKIAQQAA  813 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445667888888888888887664

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK09039 hypothetical protein; Validated

Probab=86.38  E-value=24  Score=35.71  Aligned_cols=57  Identities=16%  Similarity=0.285  Sum_probs=42.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhhhH
Q 014917          347 EIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDR  406 (416)
Q Consensus       347 EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~dr  406 (416)
                      +|..|..|.+.|++||..++..|.++..+.   ++-+.|+++-...|-.+|..|..++.|
T Consensus       138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~---~~~~~~i~~L~~~L~~a~~~~~~~l~~  194 (343)
T PRK09039        138 QVELLNQQIAALRRQLAALEAALDASEKRD---RESQAKIADLGRRLNVALAQRVQELNR  194 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477888899999999999999999999888   455566666666666666555555444

>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle

Probab=84.34  E-value=18  Score=29.99  Aligned_cols=89  Identities=18%  Similarity=0.253  Sum_probs=64.8

Q ss_pred             HHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH---
Q 014917          301 FSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLR---  377 (416)
Q Consensus       301 lsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~---  377 (416)
                      ..+-..+|..+++..+.........+-     +..|...+-+||...|..++.+.++|+.-..-|...    ..|.+   
T Consensus         6 v~~ev~~sl~~l~~~~~~~~~~~~~~~-----~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~n----p~kF~l~~   76 (97)
T PF09177_consen    6 VKDEVQSSLDRLESLYRRWQRLRSDTS-----SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKN----PSKFNLSE   76 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHT-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCC-----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccccCCCH
Confidence            345566777777777777665555444     778899999999999999999999999988877655    33433   


Q ss_pred             hhHHHHHhHHHHHHHHHHHHh
Q 014917          378 NAKEEREQFDEANNKILVYFK  398 (416)
Q Consensus       378 ~~rEERdqFdEAnnqIi~~Lk  398 (416)
                      ..-..|.+|-.+..+-|.++|
T Consensus        77 ~Ei~~Rr~fv~~~~~~i~~~k   97 (97)
T PF09177_consen   77 EEISRRRQFVSAIRNQIKQMK   97 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcC
Confidence            233467888888877777664

Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=83.31  E-value=16  Score=45.01  Aligned_cols=55  Identities=33%  Similarity=0.467  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHH
Q 014917          342 KDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVY  396 (416)
Q Consensus       342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~  396 (416)
                      +++-.|+++|+++.+++|..+.|+....+++..+++++++|=.++|+.++....-
T Consensus       932 ~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ke  986 (1930)
T KOG0161|consen  932 RKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKE  986 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455899999999999999999999999999999999999999988888766543

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.26  E-value=17  Score=36.42  Aligned_cols=154  Identities=19%  Similarity=0.302  Sum_probs=94.6

Q ss_pred             cCCcchhchHHHHHHHhhhhhcCCCCCCCcccccccccchhhccHHHHHHHHHH--HHHhhhhhhhhhhhhc---ccCCC
Q 014917          212 INADLPRIDAEARGLIGKLDKIKPVQWPSDEVVDKLSEETTTVSTEALKETLEQ--IQLCSKLEDLFLKKKS---LRNGD  286 (416)
Q Consensus       212 ~nAdi~RiD~Ea~~L~~kl~~~~~~~~~~~~~~~k~~~~~~~~~~ea~kealaq--irlCS~lE~llLkkks---l~~Gd  286 (416)
                      +-.+|..||+.+.++.+|++..+.--       +++.     .-++-|+.-+++  -||-+|=|  +|++.-   -.+|-
T Consensus        50 ~q~ei~~L~~qi~~~~~k~~~~~~~i-------~~~~-----~eik~l~~eI~~~~~~I~~r~~--~l~~raRAmq~nG~  115 (265)
T COG3883          50 IQNEIESLDNQIEEIQSKIDELQKEI-------DQSK-----AEIKKLQKEIAELKENIVERQE--LLKKRARAMQVNGT  115 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-----HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCC
Confidence            35688899999999999888776322       1111     223333333332  22333222  122211   22343


Q ss_pred             Ccc---------hhhHhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 014917          287 SPE---------QHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDE  357 (416)
Q Consensus       287 Spe---------~ha~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~Lekqkde  357 (416)
                      +-.         -....++++-.     .+.+.++++-|+++--..+..|.-   |..-+...-..|.+=+.+||.+.+.
T Consensus       116 ~t~Yidvil~SkSfsD~IsRvtA-----i~~iv~aDk~ile~qk~dk~~Le~---kq~~l~~~~e~l~al~~e~e~~~~~  187 (265)
T COG3883         116 ATSYIDVILNSKSFSDLISRVTA-----ISVIVDADKKILEQQKEDKKSLEE---KQAALEDKLETLVALQNELETQLNS  187 (265)
T ss_pred             hhHHHHHHHccCcHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322         01345666655     356789999999987666666653   3334444445666777788888888


Q ss_pred             HHHHHHHHhhhHHHHHHHHHhhHHHHHhHH
Q 014917          358 LEIALKKVNTSLVTTRARLRNAKEEREQFD  387 (416)
Q Consensus       358 LEAeLkkVn~sL~aA~aRl~~~rEERdqFd  387 (416)
                      |+.+....|..+.++.++...+.+|.....
T Consensus       188 L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~  217 (265)
T COG3883         188 LNSQKAEKNALIAALAAKEASALGEKAALE  217 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            888888888888888888888888876654

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=81.88  E-value=40  Score=31.55  Aligned_cols=106  Identities=28%  Similarity=0.261  Sum_probs=65.5

Q ss_pred             HhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 014917          293 VKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTT  372 (416)
Q Consensus       293 ~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA  372 (416)
                      +...+++.-.+.|-....+.+.+|.+...+-+++..-|     +-+.-=.++..++..|+++..+|.++|++....=   
T Consensus        62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r-----~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~D---  133 (188)
T PF03962_consen   62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR-----EESEEREELLEELEELKKELKELKKELEKYSEND---  133 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence            33445666666677778888888888877777774433     2334445678899999999999999998554321   


Q ss_pred             HHHHHhhHHHHHhHHHH-------HHHHHHHHhhhhhhhhHH
Q 014917          373 RARLRNAKEEREQFDEA-------NNKILVYFKSKMSCQDRL  407 (416)
Q Consensus       373 ~aRl~~~rEERdqFdEA-------nnqIi~~Lk~K~s~~dr~  407 (416)
                      -.++...+++-..+-+|       ---|..+++.|. ..|+.
T Consensus       134 p~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~-~~~~~  174 (188)
T PF03962_consen  134 PEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKKF-GMDEE  174 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc-CCCHH
Confidence            12333444443333333       334677777764 34443

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>smart00338 BRLZ basic region leucin zipper

Probab=81.47  E-value=8.7  Score=29.51  Aligned_cols=45  Identities=31%  Similarity=0.404  Sum_probs=31.4

Q ss_pred             hHHHhhhhhhhhhhhHHHHHH---HHHHHHHHHHhHHHHHHHHHHHhh
Q 014917          323 KEEALHFRLAKCNEVCQLEKD---LTVEIQELEKQKDELEIALKKVNT  367 (416)
Q Consensus       323 KEeAl~fRv~K~~Ev~~~EKe---l~~EI~~LekqkdeLEAeLkkVn~  367 (416)
                      ++-|..+|..|-..+..+|.+   |..|.+.|..+.+.|+.++..+..
T Consensus        14 R~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~   61 (65)
T smart00338       14 REAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS   61 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999988888764   345666666666666666555443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=81.39  E-value=54  Score=36.20  Aligned_cols=6  Identities=33%  Similarity=0.955  Sum_probs=3.3

Q ss_pred             hhcCcH
Q 014917          163 CLAGGK  168 (416)
Q Consensus       163 CL~GGk  168 (416)
                      +++||.
T Consensus       654 ~~tgG~  659 (1164)
T TIGR02169       654 AMTGGS  659 (1164)
T ss_pred             CccCCC
Confidence            446663

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=80.70  E-value=21  Score=33.88  Aligned_cols=70  Identities=14%  Similarity=0.306  Sum_probs=44.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhhh
Q 014917          336 EVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQD  405 (416)
Q Consensus       336 Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~d  405 (416)
                      +...--.++..||..|++|.+.|+...+++...+++.+..+....++-++.++...+|.-.+..-...++
T Consensus        46 ~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~  115 (251)
T PF11932_consen   46 QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELE  115 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445566677777777777777777777777777776666666667777666666665554444443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []

Probab=80.32  E-value=8.6  Score=33.23  Aligned_cols=58  Identities=24%  Similarity=0.392  Sum_probs=49.4

Q ss_pred             HHHHHHhHHHHHHHHHHHhhhH-HHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhhh
Q 014917          348 IQELEKQKDELEIALKKVNTSL-VTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQD  405 (416)
Q Consensus       348 I~~LekqkdeLEAeLkkVn~sL-~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~d  405 (416)
                      -..+++.++.++.||..+.++| ..|+--...+|.||..+..-+.+.-.-|+-+...++
T Consensus        10 r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~   68 (100)
T PF06428_consen   10 REEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLE   68 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3458899999999999999999 889999999999999999999988877776664443

It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.

>PRK11281 hypothetical protein; Provisional

Probab=80.22  E-value=28  Score=40.84  Aligned_cols=100  Identities=16%  Similarity=0.183  Sum_probs=53.9

Q ss_pred             HhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhh---hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhH
Q 014917          293 VKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLA---KCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSL  369 (416)
Q Consensus       293 ~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~---K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL  369 (416)
                      ++.++-+.=.+.|......|.+++-+...+.+ +++=...   +.+.-.....++...+..++.+..+.+++|...|+.|
T Consensus        73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le-~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqL  151 (1113)
T PRK11281         73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELE-ALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQL  151 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666777777777777766655 3331100   0111112223455555566666666666666666666


Q ss_pred             HHHHHHHHhhH----HHHHhHHHHHHHH
Q 014917          370 VTTRARLRNAK----EEREQFDEANNKI  393 (416)
Q Consensus       370 ~aA~aRl~~~r----EERdqFdEAnnqI  393 (416)
                      ..++.+...++    +-+.+-.|+++++
T Consensus       152 i~~qT~PERAQ~~lsea~~RlqeI~~~L  179 (1113)
T PRK11281        152 VSLQTQPERAQAALYANSQRLQQIRNLL  179 (1113)
T ss_pred             HhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            66555444333    3355666666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	416
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.7 bits (167), Expect = 1e-12
 Identities = 71/456 (15%), Positives = 150/456 (32%), Gaps = 106/456 (23%)

Query: 10  NLTRTVRSYA--DTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVSVSCRGIE 67
           ++ +++ S    D ++  + +AV+      T R+    F       + + +  V     E
Sbjct: 40  DMPKSILSKEEIDHIIM-SKDAVSG-----TLRL----FWTLLSKQEEMVQKFVE----E 85

Query: 68  RVQLLRRWLV-ALKEVERCSTSPDNNYLELDDQLNSDSPKKPTVVYFVDPDSGGGEPM-N 125
            +++  ++L+  +K  +R  +     Y+E  D+L +D+       Y V       +P   
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK--YNVSR----LQPYLK 139

Query: 126 FRDVFLFSQALEGITL---------SMILEAPDEEEVSLLLE--IFGLCLAGGKEVHSAV 174
            R   L  +  + + +          + L+     +V   ++  IF L L         V
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETV 198

Query: 175 MSSIQDLATVFS---TYQDEVLVKREELLQYAQGAIAGLKINADLPR------------- 218
           +  +Q L        T + +     +  +   Q  +  L  +                  
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 219 IDA---EARGLIGKLDKIKPVQWPSDEVVDKLSEETTT-VSTEALKETLEQIQLCSKLED 274
            +A     + L+    K         +V D LS  TTT +S +    TL       +++ 
Sbjct: 259 WNAFNLSCKILLTTRFK---------QVTDFLSAATTTHISLDHHSMTLTP----DEVKS 305

Query: 275 LFLKKKSLRNGDSPEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKC 334
           L LK    R  D P +  +  +  ++   S++        R            +++   C
Sbjct: 306 LLLKYLDCRPQDLPRE-VLTTNPRRL---SII----AESIRDGLATWD-----NWKHVNC 352

Query: 335 NEVCQ-LEKDLTV-EIQELEKQKDELEIALKKVNTSLVTTR--ARLRNAKEEREQFDEAN 390
           +++   +E  L V E  E  K  D L +     +   + T   + +     + +     N
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH---IPTILLSLIWFDVIKSDVMVVVN 409

Query: 391 ---NKILV--------------YFKSKMSCQDRLLL 409
                 LV              Y + K+  ++   L
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 30/149 (20%), Positives = 64/149 (42%), Gaps = 1/149 (0%)

Query: 246  KLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKLKIFSESL 305
            +  EE      E  +    Q +  ++L++L  K   L    +  Q  ++           
Sbjct: 854  RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913

Query: 306  VNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEK-DLTVEIQELEKQKDELEIALKK 364
            +     A+K+ LE    + EA      + ++  Q EK  +  ++ +LE+Q +E E A +K
Sbjct: 914  MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973

Query: 365  VNTSLVTTRARLRNAKEEREQFDEANNKI 393
            +    VT   +++  +++    ++ NNK+
Sbjct: 974  LQLEKVTADGKIKKMEDDILIMEDQNNKL 1002

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	416
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	91.88
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	88.83
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	86.67
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	85.16

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=91.88  E-value=7.6  Score=35.66  Aligned_cols=19  Identities=16%  Similarity=0.277  Sum_probs=11.5

Q ss_pred             cchhchHHHHHHHhhhhhc
Q 014917          215 DLPRIDAEARGLIGKLDKI  233 (416)
Q Consensus       215 di~RiD~Ea~~L~~kl~~~  233 (416)
                      ++..||.++..|..++...
T Consensus        12 ~LQ~lD~~i~~l~~~~~~l   30 (256)
T 3na7_A           12 EISHLDKEIDSLEPLIREK   30 (256)
T ss_dssp             HHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            3455676666666666554

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.83  E-value=2  Score=36.05  Aligned_cols=29  Identities=7%  Similarity=0.245  Sum_probs=11.8

Q ss_pred             HHHHHHHhHHHHHHHHHHHhhhHHHHHHH
Q 014917          347 EIQELEKQKDELEIALKKVNTSLVTTRAR  375 (416)
Q Consensus       347 EI~~LekqkdeLEAeLkkVn~sL~aA~aR  375 (416)
                      +|..|+.+....+++++++...|...+.+
T Consensus        13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~   41 (97)
T 2eqb_B           13 DYNTLKRELSDRDDEVKRLREDIAKENEL   41 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444333333

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=86.67  E-value=3.5  Score=40.23  Aligned_cols=56  Identities=9%  Similarity=0.217  Sum_probs=43.3

Q ss_pred             hhhhhhhhhhhhhhhhHhhccCCChhHHHHHHHHHH-hhhcCcHH-HHHHHHHhHHHHHH
Q 014917          126 FRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFG-LCLAGGKE-VHSAVMSSIQDLAT  183 (416)
Q Consensus       126 FrdVFL~SqALEgI~lSmileaP~eeEvsLLlEiFg-lCL~GGke-vh~Ai~ssiqdLA~  183 (416)
                      +..|+-+..++-.|+.|  +-+|+..-+.+.+|+++ +|+.++.+ +|..|++++...+.
T Consensus        92 l~~vl~~~~~i~~l~~s--L~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~  149 (386)
T 2bnx_A           92 IKTMLETEEGILLLVRA--MDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  149 (386)
T ss_dssp             HHHHHHSSSHHHHHHHT--CCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHH--hCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence            55677777777666666  56888888888999887 99987644 79999999988653

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=85.16  E-value=4.3  Score=31.87  Aligned_cols=40  Identities=28%  Similarity=0.307  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 014917          343 DLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEE  382 (416)
Q Consensus       343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEE  382 (416)
                      ..-.||..|.++.-.||.+|-+++..|..|...|..+..-
T Consensus        38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~   77 (81)
T 1ic2_A           38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4468899999999999999999999999999998876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00