Citrus Sinensis ID: 014919

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
Protein Sequence
MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK
Secondary Structure (PSIPRED)
ccccccccEEEEEcccccccHHHHHHHHHHHcccEEEEcHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccEEEccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHcccccccEEEEEcccEEEEEccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHccccEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccHHHHHHHHcccHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEccccHHHHHHHHHHHHHHHcEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccEEEEcccEEEEccccHHcccEccHcccccccccccccHHHHHHHHHHHHHccEEEEccccccEcHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHccccccEEEEcccccHHHHHHcccccccEHEccccccccccHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHEEccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEHcHHHHHHHHHHHHHHHHccccEEEEEcccccccccccHHccccccccccHHHHHHccccccEEEEEccccccc
Coil and Loop (DISEMBL)
makldekpyaaiiggGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHalglpvppelvekgaNDAASDLIQFARDKhitilypkdfwctkihhpnqveifpshgipdgwepvdigprsVEEITSTITKCKKviwvgpvkfrfssqysngasKLTGMLCkvsqgtcnVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKgrmlpgvsaldrafpfdidwsaayhdpaqplvvdigsgngLFLLGMARKRKDLNFLGLELVTHCRdslqlsgitngyfiATNATSTFRSIVASYPGKLILVSiqcpnpdfnrpehRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDEcdtktnqggwlgensfgvrsdweqhvidrgapmyrlmlskpscvk
Flexible Loop (DISEMBL)
MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKtnqggwlgensfgvrsdWEQHVIDRGAPmyrlmlskpscvk
Low Complexity Region (SEG)
MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK
Disordered region (IsUnstruct)
********YAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLM********
Disordered Region (DISOPRED)
*AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTK*****WLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP****
Disordered Region (DISEMBL)
MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK
Disordered Region (DISPRO)
***LDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	416	2.2.26 [Sep-21-2011]
Q9LD57	481	Phosphoglycerate kinase 1	no	no	0.516	0.446	0.310	1e-26
P50318	478	Phosphoglycerate kinase 2	no	no	0.516	0.449	0.310	5e-26
P29409	433	Phosphoglycerate kinase,	N/A	no	0.516	0.496	0.310	9e-26
Q42961	481	Phosphoglycerate kinase,	N/A	no	0.504	0.436	0.322	3e-25
Q31P73	402	Phosphoglycerate kinase O	yes	no	0.504	0.522	0.317	6e-25
Q5N4Z6	402	Phosphoglycerate kinase O	yes	no	0.504	0.522	0.317	7e-25
A2C025	401	Phosphoglycerate kinase O	yes	no	0.490	0.508	0.352	4e-24
Q7VDZ4	402	Phosphoglycerate kinase O	yes	no	0.5	0.517	0.315	4e-24
A9BDF8	402	Phosphoglycerate kinase O	yes	no	0.502	0.519	0.319	5e-24
B0JUK5	211	tRNA (guanine-N(7)-)-meth	yes	no	0.423	0.834	0.356	6e-24

>sp|Q9LD57|PGKH1_ARATH Phosphoglycerate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=PGK1 PE=1 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 1/216 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   + 
Sbjct: 266 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 325

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A++L+  A+ K +++L P D        P+   +I P+ GI DGW  +DIGP S++    
Sbjct: 326 ATELLAKAKAKGVSLLLPTDVVVADKFAPDANSKIVPASGIEDGWMGLDIGPDSIKTFNE 385

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            +   + VIW GP+      +++ G   +   L ++S+      + G  +  A+ KV  +
Sbjct: 386 ALDTTQTVIWNGPMGVFEMEKFAAGTEAIANKLAELSEKGVTTIIGGGDSVAAVEKVGVA 445

Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDI 220
               ++   G A  E L+G++LPGV ALD A P  +
Sbjct: 446 GVMSHISTGGGASLELLEGKVLPGVIALDEAIPVTV 481

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 2EC: .EC: 3

>sp|P50318|PGKH2_ARATH Phosphoglycerate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=3

 Score =  119 bits (297), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 1/216 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   + 
Sbjct: 263 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 322

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A+ L+  A+ + +++L P D        P+   +I P+  IPDGW  +DIGP SV+    
Sbjct: 323 ATTLLAKAKARGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNE 382

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            +   + VIW GP+      +++ G   +   L ++S+      + G  +  A+ KV  +
Sbjct: 383 ALDTTQTVIWNGPMGVFEFEKFAKGTEAVANKLAELSKKGVTTIIGGGDSVAAVEKVGVA 442

Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDI 220
               ++   G A  E L+G++LPGV ALD A P  +
Sbjct: 443 GVMSHISTGGGASLELLEGKVLPGVVALDEATPVTV 478

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|P29409|PGKH_SPIOL Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2

 Score =  118 bits (295), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 1/216 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A G+ V   LVE+   D 
Sbjct: 218 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGMSVGSSLVEEDKLDL 277

Query: 66  ASDLIQFARDKHITILYPKDF-WCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A+ L+  A++K +++L P D     K       +I P+ GIPDGW  +DIGP S++  + 
Sbjct: 278 ATSLLAKAKEKGVSLLLPTDVVIADKFAADADSKIVPASGIPDGWMGLDIGPDSIKTFSE 337

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            +   + VIW GP+      +++ G   +   L ++S+      + G  +  A+ KV  +
Sbjct: 338 ALDTTQTVIWNGPMGVFEFEKFAAGTEAIAKKLEEISKKGATTIIGGGDSVAAVEKVGVA 397

Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDI 220
               ++   G A  E L+G+ LPGV AL+ A P  +
Sbjct: 398 EAMSHISTGGGASLELLEGKQLPGVLALNEADPVPV 433

Spinacia oleracea (taxid: 3562)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|Q42961|PGKH_TOBAC Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1

 Score =  116 bits (290), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 107/211 (50%), Gaps = 1/211 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   + 
Sbjct: 265 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 324

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A+ L++ A+ K +++L P D        P+   +I P+  IPDGW  +DIGP SV+    
Sbjct: 325 ATSLLEKAKAKGVSLLLPSDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFND 384

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            +   K VIW GP+      +++ G   +   L  +S       + G  +  A+ KV  +
Sbjct: 385 ALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVA 444

Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALDRA 215
               ++   G A  E L+G++LPGV ALD A
Sbjct: 445 SVMSHISTGGGASLELLEGKVLPGVIALDEA 475

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|Q31P73|PGK_SYNE7 Phosphoglycerate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=pgk PE=3 SV=1

 Score =  115 bits (288), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 105/211 (49%), Gaps = 1/211 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   D 
Sbjct: 191 QRPLAAIVGGSKVSSKIGVIETLLDKCDKLLIGGGMIFTFYKAQGLSVGGSLVEEDKLDL 250

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A  L+  A++K + +L P D        P+   +      IPDGW  +DIGP SV++   
Sbjct: 251 ARSLMAKAQEKGVQLLLPVDVVVADKFAPDANAKTVAIDAIPDGWMGLDIGPESVKQFEE 310

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            +  C+ VIW GP+      Q++ G   +   L  +++      + G  +  A+ KV  +
Sbjct: 311 ALADCRSVIWNGPMGVFEFDQFAVGTEAIARSLAGLTRKGATTIIGGGDSVAAVEKVGVA 370

Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALDRA 215
               ++   G A  E L+G++LPGV+ALD A
Sbjct: 371 SEMSHISTGGGASLELLEGKVLPGVAALDDA 401

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|Q5N4Z6|PGK_SYNP6 Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=pgk PE=3 SV=1

 Score =  115 bits (288), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 105/211 (49%), Gaps = 1/211 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   D 
Sbjct: 191 QRPLAAIVGGSKVSSKIGVIETLLDKCDKLLIGGGMIFTFYKAQGLSVGGSLVEEDKLDL 250

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A  L+  A++K + +L P D        P+   +      IPDGW  +DIGP SV++   
Sbjct: 251 ARSLMAKAQEKGVQLLLPVDVVVADKFAPDANAKTVAIDAIPDGWMGLDIGPESVKQFEG 310

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            +  C+ VIW GP+      Q++ G   +   L  +++      + G  +  A+ KV  +
Sbjct: 311 ALADCRSVIWNGPMGVFEFDQFAVGTEAIARSLAGLTRKGATTIIGGGDSVAAVEKVGVA 370

Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALDRA 215
               ++   G A  E L+G++LPGV+ALD A
Sbjct: 371 SEMSHISTGGGASLELLEGKVLPGVAALDDA 401

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|A2C025|PGK_PROM1 Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=pgk PE=3 SV=1

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 108/213 (50%), Gaps = 9/213 (4%)

Query: 8   PYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAAS 67
           P AAI+GG  + +K   L  L  +CD +I  G M F    A GL V   LVE+   + AS
Sbjct: 193 PLAAIVGGSKVSSKIGVLESLIDKCDKIIVGGGMIFTFYKARGLSVGNSLVEEDKLELAS 252

Query: 68  DLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITSTI 126
            L + A++K +  L P D        P+   ++     I +GW  +DIG  SVE   + +
Sbjct: 253 ALEKKAKEKGVEFLLPTDVVLADNFSPDANSKLSKVDAISEGWMGLDIGSESVELFQNAL 312

Query: 127 TKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVS-QGTCNVTVIGSMACKAIAKVSSSI 185
             CK VIW GP+      +++NG + +   L ++S QG C  T+IG     ++A V  + 
Sbjct: 313 KDCKTVIWNGPMGVFEFEKFANGTNAIANTLAELSAQGCC--TIIG--GGDSVAAVEKAG 368

Query: 186 FGLNMVE---SGSAVWEFLKGRMLPGVSALDRA 215
              NM      G A  E L+G++LPGVSALD A
Sbjct: 369 LAKNMSHISTGGGASLELLEGKVLPGVSALDDA 401

Prochlorococcus marinus (strain NATL1A) (taxid: 167555)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|Q7VDZ4|PGK_PROMA Phosphoglycerate kinase OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=pgk PE=3 SV=1

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 105/209 (50%), Gaps = 1/209 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P AAI+GG  + +K   L  L  +CD ++  G M F    A GL V   LVE    D 
Sbjct: 191 QRPLAAIVGGSKVSSKIGVLESLIDKCDKVLIGGGMIFTFYKARGLSVGKSLVEDDKLDL 250

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A  L + A++K + +L P D        P+   ++     IP+GW  +DIG  SV+    
Sbjct: 251 ARALEKKAKEKGVQLLLPSDVVLADNFSPDASSQMVQIDSIPEGWMGLDIGKESVKLFQD 310

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            +  CK VIW GP+      +++NG + ++  L ++S   C   + G  +  A+ K   +
Sbjct: 311 ALADCKTVIWNGPMGVFEFDKFANGTNSISTTLAELSAKGCCTIIGGGDSVAAVEKAGLA 370

Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALD 213
               ++   G A  E L+G++LPGV+ALD
Sbjct: 371 SKMSHISTGGGASLELLEGKVLPGVAALD 399

Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|A9BDF8|PGK_PROM4 Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=pgk PE=3 SV=1

 Score =  112 bits (281), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 104/210 (49%), Gaps = 1/210 (0%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P AAI+GG  + +K   L  L  +CD ++  G M F    A GL V   LVE    + 
Sbjct: 191 KRPLAAIVGGSKVSSKIGVLESLIDKCDKVLIGGGMIFTFYKARGLSVGKSLVEDDKLEL 250

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A  L + A+ K + +L P D        P+   +I   + IP+GW  +DIGP SV+    
Sbjct: 251 AKALEEKAKSKGVELLLPTDVVLADNFSPDANSQIAQINSIPEGWMGLDIGPDSVKLFQD 310

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            +  C+ VIW GP+      +++NG + +   L  +SQ  C   + G  +  A+ K   +
Sbjct: 311 ALEDCQTVIWNGPMGVFEFDKFANGTNSIATTLSVLSQKGCCTIIGGGDSVAAVEKAGLA 370

Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALDR 214
               ++   G A  E L+G+ LPGV+ALD 
Sbjct: 371 DKMSHISTGGGASLELLEGKTLPGVAALDE 400

Prochlorococcus marinus (strain MIT 9211) (taxid: 93059)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|B0JUK5|TRMB_MICAN tRNA (guanine-N(7)-)-methyltransferase OS=Microcystis aeruginosa (strain NIES-843) GN=trmB PE=3 SV=1

 Score =  112 bits (280), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 100/191 (52%), Gaps = 15/191 (7%)

Query: 221 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGIT 276
           DW+  Y D  QPL +DIG   G FLL MA+   ++NFLG+E    LV       +  G++
Sbjct: 25  DWNQVYQDMTQPLHLDIGCARGKFLLQMAQVEPEINFLGIEIRQPLVIEANQERERLGLS 84

Query: 277 NGYFIATNATSTFRSIVASYPG-KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 335
           N  F+  N       ++ S P  KL  VSIQ P+P F +   + R+VQ  LV A++  +V
Sbjct: 85  NLAFVFGNMNVAPEILLQSLPADKLFWVSIQFPDPWFKQRHSKRRVVQPELVIALAKYMV 144

Query: 336 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQ 395
             G VFLQSD+E + L M ++F  +              + +Q  WL EN F V ++ E+
Sbjct: 145 AGGWVFLQSDVESIALEMTERFQAHPHF----------VRQHQTPWLEENIFPVPTEREK 194

Query: 396 HVIDRGAPMYR 406
              ++G P+YR
Sbjct: 195 STYNKGQPVYR 205

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
359481547	618	PREDICTED: phosphoglycerate kinase-like	0.990	0.666	0.668	1e-166
297741637	581	unnamed protein product [Vitis vinifera]	0.990	0.709	0.668	1e-165
224140203	606	predicted protein [Populus trichocarpa]	1.0	0.686	0.654	1e-164
255556946	678	phosphoglycerate kinase, putative [Ricin	0.978	0.600	0.658	1e-164
356551092	710	PREDICTED: phosphoglycerate kinase-like	0.983	0.576	0.621	1e-158
449518274	675	PREDICTED: phosphoglycerate kinase, chlo	0.985	0.607	0.601	1e-147
449440121	674	PREDICTED: phosphoglycerate kinase, chlo	0.978	0.603	0.600	1e-146
357140541	769	PREDICTED: phosphoglycerate kinase-like	0.961	0.520	0.510	1e-118
242034345	649	hypothetical protein SORBIDRAFT_01g02093	0.956	0.613	0.502	1e-116
78708732	673	methyltransferase family protein, expres	0.961	0.594	0.514	1e-116

>gi|359481547|ref|XP_002276911.2| PREDICTED: phosphoglycerate kinase-like [Vitis vinifera]

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 278/416 (66%), Positives = 338/416 (81%), Gaps = 4/416 (0%)

Query: 2   AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKG 61
           A++++KP  AIIGGGNL +KA+A+ +LASRCDGL+FVG+M+FQIMHALGL VP  L+E G
Sbjct: 200 AQINKKPCIAIIGGGNLFDKASAVRYLASRCDGLVFVGMMAFQIMHALGLHVPLNLLEGG 259

Query: 62  ANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEE 121
               AS+++Q A+++ I ILYPKDFWC     P Q+EIFP++GI DGW PVD GP++++E
Sbjct: 260 PLKEASNIVQLAQNRKIPILYPKDFWCMTNDFPKQMEIFPAYGILDGWIPVDPGPKALDE 319

Query: 122 ITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
           I S +T CKK+IW+GPVKFR  SQ   GASKL  ML +++Q  C +TVIG+MACKA+ K 
Sbjct: 320 INSLLTGCKKIIWIGPVKFRLPSQDIYGASKLVSMLDRLTQSNCEITVIGNMACKAVMKE 379

Query: 182 SSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGN 241
           SS +   NMVE+ S VWEFLKGR LPG+ ALDRA+P +IDW+AAY  P+QPLVVDIGSGN
Sbjct: 380 SSFVSVYNMVENASVVWEFLKGRKLPGLMALDRAYPVEIDWNAAYSHPSQPLVVDIGSGN 439

Query: 242 GLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP 297
           GLFLL MA++R+DLNFLGLE    LV  C D +   GI NGYFIATNATSTFRSIV+SYP
Sbjct: 440 GLFLLAMAKRREDLNFLGLEINEKLVRRCLDCVHQYGIMNGYFIATNATSTFRSIVSSYP 499

Query: 298 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 357
           G L+LVSIQCPNPDFN+PEHRWRM+QRSLVEAV+DLL  DGKVFLQSDIE V +RMK+ F
Sbjct: 500 GDLVLVSIQCPNPDFNKPEHRWRMLQRSLVEAVADLLASDGKVFLQSDIEAVAVRMKEHF 559

Query: 358 LEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 413
           L+YGKGKL +V +E  T+T++ GWL EN FGVRSDWEQHV+DRGAPMYRLMLSK +
Sbjct: 560 LKYGKGKLSVVHNEDCTETDRKGWLKENPFGVRSDWEQHVVDRGAPMYRLMLSKST 615

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741637|emb|CBI32769.3| unnamed protein product [Vitis vinifera]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 278/416 (66%), Positives = 338/416 (81%), Gaps = 4/416 (0%)

Query: 2   AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKG 61
           A++++KP  AIIGGGNL +KA+A+ +LASRCDGL+FVG+M+FQIMHALGL VP  L+E G
Sbjct: 163 AQINKKPCIAIIGGGNLFDKASAVRYLASRCDGLVFVGMMAFQIMHALGLHVPLNLLEGG 222

Query: 62  ANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEE 121
               AS+++Q A+++ I ILYPKDFWC     P Q+EIFP++GI DGW PVD GP++++E
Sbjct: 223 PLKEASNIVQLAQNRKIPILYPKDFWCMTNDFPKQMEIFPAYGILDGWIPVDPGPKALDE 282

Query: 122 ITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
           I S +T CKK+IW+GPVKFR  SQ   GASKL  ML +++Q  C +TVIG+MACKA+ K 
Sbjct: 283 INSLLTGCKKIIWIGPVKFRLPSQDIYGASKLVSMLDRLTQSNCEITVIGNMACKAVMKE 342

Query: 182 SSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGN 241
           SS +   NMVE+ S VWEFLKGR LPG+ ALDRA+P +IDW+AAY  P+QPLVVDIGSGN
Sbjct: 343 SSFVSVYNMVENASVVWEFLKGRKLPGLMALDRAYPVEIDWNAAYSHPSQPLVVDIGSGN 402

Query: 242 GLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP 297
           GLFLL MA++R+DLNFLGLE    LV  C D +   GI NGYFIATNATSTFRSIV+SYP
Sbjct: 403 GLFLLAMAKRREDLNFLGLEINEKLVRRCLDCVHQYGIMNGYFIATNATSTFRSIVSSYP 462

Query: 298 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 357
           G L+LVSIQCPNPDFN+PEHRWRM+QRSLVEAV+DLL  DGKVFLQSDIE V +RMK+ F
Sbjct: 463 GDLVLVSIQCPNPDFNKPEHRWRMLQRSLVEAVADLLASDGKVFLQSDIEAVAVRMKEHF 522

Query: 358 LEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 413
           L+YGKGKL +V +E  T+T++ GWL EN FGVRSDWEQHV+DRGAPMYRLMLSK +
Sbjct: 523 LKYGKGKLSVVHNEDCTETDRKGWLKENPFGVRSDWEQHVVDRGAPMYRLMLSKST 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140203|ref|XP_002323474.1| predicted protein [Populus trichocarpa] gi|222868104|gb|EEF05235.1| predicted protein [Populus trichocarpa]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 275/420 (65%), Positives = 334/420 (79%), Gaps = 4/420 (0%)

Query: 1   MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEK 60
           +A+ +++PY AIIGGGNL +KA+ALHFL SRCDGL+FVG+MSFQIMHALGL VP  LVE 
Sbjct: 187 VARTNKRPYVAIIGGGNLYDKASALHFLVSRCDGLVFVGMMSFQIMHALGLSVPSYLVEP 246

Query: 61  GANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVE 120
           GA  AA D+IQ A D++I IL+P DFWC   H P +++IFPSH I DGW PVD+GPRS++
Sbjct: 247 GAYKAALDIIQIAHDRNIPILHPMDFWCMNEHLPEKMDIFPSHHILDGWLPVDLGPRSLD 306

Query: 121 EITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAK 180
           E+ S + KCKK++W+GPVKF+FS Q ++GASKL   L  + Q  C++TV G+MAC+A+  
Sbjct: 307 ELNSLLVKCKKILWIGPVKFKFSGQCADGASKLAQALNDLRQRNCDITVAGNMACQAMVM 366

Query: 181 VSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSG 240
            S S+   +M+E+ S +WEF KGR LPGV ALDRA+PF+IDW +AY +PAQPLVVDIGSG
Sbjct: 367 ESKSVLVNDMIENASVLWEFFKGRKLPGVMALDRAYPFEIDWKSAYCNPAQPLVVDIGSG 426

Query: 241 NGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY 296
           +GLFLLGMAR+RKDLNFLGLE    LV  C DS+   GI NGYFI TNAT+TFRSIV+SY
Sbjct: 427 SGLFLLGMARRRKDLNFLGLEINSKLVRRCMDSVHQYGIQNGYFIVTNATTTFRSIVSSY 486

Query: 297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ 356
           PG+L+LVSIQCPNPDFN PEHRWRM+QRSL++AV DLL  DGKVFLQSD+E V LRMK+ 
Sbjct: 487 PGELVLVSIQCPNPDFNNPEHRWRMLQRSLIKAVVDLLALDGKVFLQSDLEAVALRMKEL 546

Query: 357 FLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK 416
           FL+ GKGKL L  D+   + N G WL EN FGV SDWEQHVIDRG PMYRLMLSK S ++
Sbjct: 547 FLKIGKGKLNLWNDQYHARMNLGEWLEENPFGVMSDWEQHVIDRGDPMYRLMLSKSSGIE 606

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556946|ref|XP_002519506.1| phosphoglycerate kinase, putative [Ricinus communis] gi|223541369|gb|EEF42920.1| phosphoglycerate kinase, putative [Ricinus communis]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 272/413 (65%), Positives = 336/413 (81%), Gaps = 6/413 (1%)

Query: 5   DEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGAND 64
           ++KPY AIIGGGNL +KAAAL FLAS+CDGL+FVG+MSFQIMHALG  VP  L+E  A+ 
Sbjct: 265 NKKPYIAIIGGGNLYDKAAALQFLASKCDGLVFVGMMSFQIMHALGYSVPSSLIEPKAHK 324

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           AA D+I FA  ++I+ILYPKDFWCT  H  N++E+ P+H + DGW PVD+GP S++EI +
Sbjct: 325 AALDIIHFAHKRNISILYPKDFWCTNAHVMNEMEVVPAHHLLDGWLPVDLGPMSLDEINT 384

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            + K KK+IW+GP KF+FS+   NGASKL  +L ++SQ TC+VTV+G++ACKA+   SSS
Sbjct: 385 LLVKSKKIIWIGPPKFKFSNPCINGASKLAQVLDELSQPTCDVTVVGNLACKAVMVESSS 444

Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF 244
           +   +++E+ S VW+F K R LPGV ALDRA+PF IDWSA YHDPAQPLVVDIG GNG+F
Sbjct: 445 LLAYDLIENASVVWDFFKRRNLPGVMALDRAYPFKIDWSAVYHDPAQPLVVDIGCGNGMF 504

Query: 245 LLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL 300
           LLGMAR++KDLNFLGLE    LV  C DS+  SGI+NG+FIATNAT+TFRSIV+SYPG+L
Sbjct: 505 LLGMARRKKDLNFLGLEINKKLVRRCLDSVHQSGISNGHFIATNATTTFRSIVSSYPGEL 564

Query: 301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 360
           +LVSIQCPNPDFN PEHRWRM+QRSLVEAV+DLL HDGKVFLQSDI+ V +RMK+ FL+Y
Sbjct: 565 VLVSIQCPNPDFNDPEHRWRMLQRSLVEAVADLLAHDGKVFLQSDIKTVAVRMKELFLKY 624

Query: 361 GKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 413
           G+G+L+LV D+ +       WL EN FGVRSDWEQHVID+G PMYRLMLSK +
Sbjct: 625 GRGRLMLVNDQFEATIRV--WLEENPFGVRSDWEQHVIDQGRPMYRLMLSKST 675

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551092|ref|XP_003543912.1| PREDICTED: phosphoglycerate kinase-like [Glycine max]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 261/420 (62%), Positives = 330/420 (78%), Gaps = 11/420 (2%)

Query: 1   MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEK 60
           +A+   KPY AI+GGGNL +KAA+  FLASRC G +FVG+MSFQ+MHALG+ VP  LV+ 
Sbjct: 296 LAEESRKPYVAILGGGNLYDKAASFQFLASRCQGFVFVGMMSFQVMHALGVSVPRNLVDH 355

Query: 61  GANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVE 120
            A + A D+++ ARD+++ ILYPKDFWC K   P Q+++FPSH I DGW PVD+GP S+E
Sbjct: 356 KAFNEALDIVRLARDRNVQILYPKDFWCRKKCDPTQLQVFPSHEISDGWVPVDLGPASLE 415

Query: 121 EITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAK 180
           EI S +T CKK+IW+GPVKF  SS+Y+ GASKLT +L ++SQ +C +TV+G+MA K + +
Sbjct: 416 EICSMLTNCKKIIWIGPVKFTDSSKYTYGASKLTRILEQLSQNSCEITVVGTMASKLVRQ 475

Query: 181 VSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSG 240
             SS+  +NMVE+ S +WEFLKGR LPGV A+DR +PF+I+W++ Y DPAQ LVVDIGSG
Sbjct: 476 EKSSLSLINMVENASVLWEFLKGRKLPGVMAVDRGYPFEINWNSIYSDPAQSLVVDIGSG 535

Query: 241 NGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY 296
           NGLFLL MAR+++DLNFLGLE    LV  C DS+   GI NGYFIATNATSTF SIV+SY
Sbjct: 536 NGLFLLEMARRKQDLNFLGLEINEKLVLRCLDSIHQFGIKNGYFIATNATSTFHSIVSSY 595

Query: 297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ 356
           PG+L+LVSIQCPNPDFN+PEHRWRM+QRSL+EAV DLL  +GK+FLQSD+E V +RMK+Q
Sbjct: 596 PGELVLVSIQCPNPDFNKPEHRWRMLQRSLIEAVVDLLAPNGKIFLQSDVEAVAIRMKEQ 655

Query: 357 FLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK 416
           F  YGKGKL       D +  Q  WL EN FGVRSDWE+HV++RGAPMYR+M +K S ++
Sbjct: 656 FFRYGKGKL-------DLEHGQSEWLEENPFGVRSDWERHVLERGAPMYRMMFTKSSDIR 708

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518274|ref|XP_004166167.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Cucumis sativus]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/419 (60%), Positives = 315/419 (75%), Gaps = 9/419 (2%)

Query: 2   AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKG 61
           A+   +PY AIIGGGNL NK AALH LAS C  L+FVG+MSFQIM ALGL V   L+  G
Sbjct: 259 AQTKRQPYVAIIGGGNLLNKLAALHVLASTCSVLVFVGMMSFQIMQALGLSVSYRLMNHG 318

Query: 62  ANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEE 121
               A++LIQF+ DK + I+YPKDFWC  +    ++EIF SH IPDGW PVD+GP S++E
Sbjct: 319 VCKEAAELIQFSLDKRVRIVYPKDFWCANVDTSKKMEIFASHDIPDGWLPVDLGPTSLDE 378

Query: 122 ITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
           I + +   KK+IW+GPVKF  SSQ + GAS+L   L  +SQ  C++TV+G+ ACKAI + 
Sbjct: 379 INALLMNSKKIIWIGPVKFSDSSQSARGASRLARKLYDLSQRDCDITVVGTTACKAIMQE 438

Query: 182 SSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGN 241
           SS++   N+ E+ S VW+F KG+ LPGV ALDRA+P++I+W A + D A PLVVDIGSGN
Sbjct: 439 SSTLCAYNVFENASVVWDFFKGKQLPGVLALDRAYPYEINWDAVFCDTALPLVVDIGSGN 498

Query: 242 GLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP 297
           G+FLL MAR+RKD NFLGLE    LV  C  S+    + NG+FIATNATSTFRSIV +YP
Sbjct: 499 GMFLLEMARRRKDHNFLGLEINEKLVKRCLHSVHQLEMKNGHFIATNATSTFRSIVCNYP 558

Query: 298 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 357
           G+L+LVSIQCPNPDFN+PEHRWRM+QRSLVEAV+DLL  +GKVFLQSD+E V LRM++ F
Sbjct: 559 GELVLVSIQCPNPDFNKPEHRWRMLQRSLVEAVADLLASNGKVFLQSDVEAVALRMREAF 618

Query: 358 LEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCVK 416
           L YGKGKL ++Q++   +     WL EN FGVRSDWE+HV+DRG PM+RLMLSK +  K
Sbjct: 619 LLYGKGKLGVLQEQVGEE-----WLSENPFGVRSDWERHVLDRGDPMFRLMLSKSTTTK 672

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440121|ref|XP_004137833.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Cucumis sativus]

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/416 (60%), Positives = 313/416 (75%), Gaps = 9/416 (2%)

Query: 2   AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKG 61
           A+   +PY AIIGGGNL NK AALH LAS C  L+FVG+MSFQIM ALGL V   L+  G
Sbjct: 259 AQTKRQPYVAIIGGGNLLNKLAALHVLASTCSVLVFVGMMSFQIMQALGLSVSYRLMNHG 318

Query: 62  ANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEE 121
               A++LIQF+ DK + I+YPKDFWC  +    ++EIF SH IPDGW PVD+GP S++E
Sbjct: 319 VCKEAAELIQFSLDKRVRIVYPKDFWCANVDTSKKMEIFASHDIPDGWLPVDLGPTSLDE 378

Query: 122 ITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
           I + +   KK+IW+GPVKF  SSQ + GAS+L   L  +SQ  C++TV+G+ ACKAI + 
Sbjct: 379 INALLMNSKKIIWIGPVKFSDSSQSARGASRLARKLYDLSQRDCDITVVGTTACKAIMQE 438

Query: 182 SSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGN 241
           SS++   N+ E+ S VW+F KG+ LPGV ALDRA+P++I+W A + D   PLVVDIGSGN
Sbjct: 439 SSTLCAYNVFENASVVWDFFKGKQLPGVLALDRAYPYEINWDAVFCDTTLPLVVDIGSGN 498

Query: 242 GLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP 297
           G+FLL MAR+RKD NFLGLE    LV  C  S+    + NG+FIATNATSTFRSIV +YP
Sbjct: 499 GMFLLEMARRRKDHNFLGLEINEKLVKRCLHSVHQLEMKNGHFIATNATSTFRSIVCNYP 558

Query: 298 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 357
           G+L+LVSIQCPNPDFN+PEHRWRM+QRSLVEAV+DLL  +GKVFLQSD+E V LRM++ F
Sbjct: 559 GELVLVSIQCPNPDFNKPEHRWRMLQRSLVEAVADLLASNGKVFLQSDVEAVALRMREAF 618

Query: 358 LEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 413
           L YGKGKL ++Q++   +     WL EN FGVRSDWE+HV+DRG PM+RLMLSK +
Sbjct: 619 LLYGKGKLGVLQEQVGEE-----WLSENPFGVRSDWERHVLDRGDPMFRLMLSKST 669

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357140541|ref|XP_003571824.1| PREDICTED: phosphoglycerate kinase-like [Brachypodium distachyon]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/415 (51%), Positives = 285/415 (68%), Gaps = 15/415 (3%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
            +PY AIIGG N   K  ALH LAS+CDGL FVG ++FQIM+ LG+PVP  L+E+ A   
Sbjct: 360 RRPYIAIIGGSNFLRKTPALHLLASQCDGLFFVGKLAFQIMNGLGIPVPSCLIERNATKE 419

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHG-----IPDGWEPVDIGPRSVE 120
           A  LIQ A +++I I YP D  C    +  ++EIF S       I  GW PVDIGP ++E
Sbjct: 420 ALQLIQIAHNRNIPIYYPTDLQCLNNRNHEKLEIFNSDALLSGLISLGWRPVDIGPSTLE 479

Query: 121 EITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAK 180
           +I+S +   KK++W+GP  +  + + S G ++L  +L K SQ +C+V ++GS ACKA+  
Sbjct: 480 KISSLMPSYKKILWIGPTSYDLTKEISVGEAQLGQILDKASQNSCDVILVGSAACKAVKG 539

Query: 181 VSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSG 240
           +S      +  E+GS VWEFLKGR+LPG++ALD+++P+ I W+  + DP  PL VDIGSG
Sbjct: 540 ISDFSSQYSAFENGSIVWEFLKGRILPGIAALDKSYPYQIPWTDVFSDPEHPLFVDIGSG 599

Query: 241 NGLFLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY 296
           NGLFL  M+R  +  NFLGLE    LVT C   L  +   N +F++TNATSTFRSI++SY
Sbjct: 600 NGLFLFQMSRNWEGSNFLGLEMNEKLVTRCLQDLASAEKRNLHFVSTNATSTFRSIISSY 659

Query: 297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ 356
           PG+L +V+IQCPNPDFN+ ++RWRMV+R LVEAV+DLL  +GK+FLQSD+E V+L MK+Q
Sbjct: 660 PGELTMVTIQCPNPDFNKEQNRWRMVRRMLVEAVADLLQINGKIFLQSDVESVLLGMKEQ 719

Query: 357 FLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 411
           F+ +GKG+LV+ +D+       G    EN FGV SDWE HV+ RG PMYR ML K
Sbjct: 720 FISHGKGRLVVDRDD------GGHGRMENPFGVASDWEGHVLARGDPMYRTMLRK 768

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242034345|ref|XP_002464567.1| hypothetical protein SORBIDRAFT_01g020930 [Sorghum bicolor] gi|241918421|gb|EER91565.1| hypothetical protein SORBIDRAFT_01g020930 [Sorghum bicolor]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/410 (50%), Positives = 272/410 (66%), Gaps = 12/410 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
            +PY AIIGG N   KA AL  L S CDGL FVG +SFQIM+ LG+ VP   +E+ A   
Sbjct: 247 RRPYIAIIGGSNFLRKAPALQMLTSLCDGLFFVGKLSFQIMNGLGMTVPSRFIERSAVKE 306

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
              +IQ ARD++I I YP D WC K      + +  S G   GW PVDIGP ++E+I+S 
Sbjct: 307 VLQIIQVARDRNIPIYYPTDLWCLKNDGSETLGVISSTGQLAGWTPVDIGPSTLEKISSI 366

Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSI 185
           I   +K++W+GP  +  +  +S G ++L  ++ K S  +C+V ++GS ACKAI + + S 
Sbjct: 367 IPSYEKILWIGPTNYNLTETFSVGGTQLGEIMEKASSDSCDVVLVGSAACKAIERKTDSS 426

Query: 186 FGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFL 245
                 ++ + VWEFLKGR+LPG++ALD+ +P+ I WS  + +P  PLVVDIGSGNGLFL
Sbjct: 427 SQYAEFQNATVVWEFLKGRILPGIAALDKCYPYRIPWSTVFFEPTLPLVVDIGSGNGLFL 486

Query: 246 LGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI 301
             MA+  +  NFLGLE    LV  C   +      N YF++TNATSTFRSIV+SYPG+L 
Sbjct: 487 FQMAKSCESSNFLGLEMNEKLVIRCLQGMTSDEKRNLYFVSTNATSTFRSIVSSYPGRLT 546

Query: 302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 361
           LV+IQCPNPDFN+ ++RWRMV+R LVEAV DLL  +G+V+LQSD+E V+L MK+QFL Y 
Sbjct: 547 LVTIQCPNPDFNKEQNRWRMVRRMLVEAVVDLLHTNGQVYLQSDVESVLLVMKEQFLSYS 606

Query: 362 KGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 411
           KG+LV+            G   +N FGV SDWE+HV+ RGAPMYR ML K
Sbjct: 607 KGQLVI--------DGVSGHQIDNPFGVVSDWERHVLARGAPMYRTMLKK 648

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78708732|gb|ABB47707.1| methyltransferase family protein, expressed [Oryza sativa Japonica Group]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/412 (51%), Positives = 282/412 (68%), Gaps = 12/412 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
            +P+ AIIGG N   KA AL+ LAS CDGL FVG +S QIM+  G+PVP   VEK +   
Sbjct: 267 RRPFIAIIGGSNFLGKAPALNLLASLCDGLFFVGKLSLQIMNGFGIPVPSCFVEKNSTKE 326

Query: 66  ASDLIQFARDKHITILYPKDFWC--TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
              LIQ A +++I I YP D WC   K ++  ++EI  S  +  GW P DIGP ++E+I+
Sbjct: 327 VLQLIQTAHNRNIPIYYPTDTWCLNNKNNNHEKLEILDSAELLPGWTPADIGPSTLEKIS 386

Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
           S +   KKV+W+GP  F  + ++S GA++L  +L K S  +C+V ++GS ACKA+  +S 
Sbjct: 387 SLMPLYKKVLWIGPTCFDLTEEFSGGAAQLGRILDKASHDSCDVILVGSAACKAVKGISG 446

Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGL 243
           S       ++ S V EFLKG++LPGV+ALD+++P+ I W+A + D +QPLVVDIGSGNGL
Sbjct: 447 SSSKYTTFKNASVVLEFLKGKILPGVAALDKSYPYQIPWNAIFSDSSQPLVVDIGSGNGL 506

Query: 244 FLLGMARKRKDLNFLGLE----LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGK 299
           FL  MAR  +  NFLGLE    LV  C   +      N YF++TNATSTFRSIV+SYPG+
Sbjct: 507 FLFQMARDWEGSNFLGLEMNKKLVVRCLRDVASVDKRNLYFVSTNATSTFRSIVSSYPGQ 566

Query: 300 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 359
           L LV+IQCPNPDFNR ++RWRMV+R LVEA++DLL  +GKV+LQSD+E V+LRMK+QF+ 
Sbjct: 567 LALVTIQCPNPDFNREQNRWRMVRRMLVEAIADLLQPNGKVYLQSDVESVLLRMKEQFMT 626

Query: 360 YGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK 411
           +GKG+LV+  D        G    +N FG  SDWE+HV+ RGAPMYR ML K
Sbjct: 627 HGKGQLVVDDD------GGGDHQMDNPFGAASDWERHVLARGAPMYRTMLRK 672

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
TAIR|locus:2175971	312	AT5G17660 [Arabidopsis thalian	0.478	0.637	0.380	6.9e-31
TAIR|locus:2087750	481	PGK1 "phosphoglycerate kinase	0.516	0.446	0.310	4.3e-24
TAIR|locus:2205215	478	AT1G56190 [Arabidopsis thalian	0.514	0.447	0.317	1.1e-23
TAIR|locus:2206410	401	PGK "phosphoglycerate kinase"	0.5	0.518	0.338	1.3e-22
CGD|CAL0000415	417	PGK1 [Candida albicans (taxid:	0.492	0.491	0.297	5.1e-18
UNIPROTKB|P46273	417	PGK1 "Phosphoglycerate kinase"	0.492	0.491	0.297	5.1e-18
TIGR_CMR|BA_5367	394	BA_5367 "phosphoglycerate kina	0.495	0.522	0.291	6.7e-18
UNIPROTKB|E7ERH5	281	PGK1 "Phosphoglycerate kinase"	0.504	0.747	0.262	2.7e-17
POMBASE|SPBC14F5.04c	414	pgk1 "phosphoglycerate kinase	0.490	0.492	0.279	1.3e-16
UNIPROTKB|F1NU17	417	PGK1 "Uncharacterized protein"	0.495	0.494	0.279	4e-16

TAIR|locus:2175971 AT5G17660 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 80/210 (38%), Positives = 115/210 (54%)

Query:   207 PGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLE---- 261
             P  S+  +  P  + W   Y DP+ PL+VDIGSG+G FLL  A K  +  N+LGLE    
Sbjct:   102 PLSSSFSKPAPVPV-WDEVYKDPSLPLMVDIGSGSGRFLLWQANKNVESRNYLGLEIRQK 160

Query:   262 LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRM 321
             LV      +   G++N +FI  NA  +F  +++SYPG L +VSI CP+P F +   + R+
Sbjct:   161 LVKRANFWVNELGLSNVHFIFANAMVSFEHLISSYPGPLEIVSILCPDPHFKKRHQKRRV 220

Query:   322 VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGW 381
             VQ+ LV ++   L   GK+F+QSD+ +V   M+ Q  E        V    DT   + GW
Sbjct:   221 VQKPLVNSILQNLKPGGKIFVQSDVLDVAQDMRDQLDEESN-----VLQHMDTVDTEDGW 275

Query:   382 LGENSFGVRSDWEQHVIDRGAPMYRLMLSK 411
             L EN  G+R++ E H    GA +YR +  K
Sbjct:   276 LTENPMGIRTEREIHAEFEGARIYRRLYQK 305

GO:0005634 "nucleus" evidence=ISM

GO:0006400 "tRNA modification" evidence=IEA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

TAIR|locus:2087750 PGK1 "phosphoglycerate kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 4.3e-24, P = 4.3e-24
 Identities = 67/216 (31%), Positives = 111/216 (51%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
             ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   + 
Sbjct:   266 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 325

Query:    66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
             A++L+  A+ K +++L P D        P+   +I P+ GI DGW  +DIGP S++    
Sbjct:   326 ATELLAKAKAKGVSLLLPTDVVVADKFAPDANSKIVPASGIEDGWMGLDIGPDSIKTFNE 385

Query:   125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
              +   + VIW GP+      +++ G   +   L ++S+      + G  +  A+ KV  +
Sbjct:   386 ALDTTQTVIWNGPMGVFEMEKFAAGTEAIANKLAELSEKGVTTIIGGGDSVAAVEKVGVA 445

Query:   185 IFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDI 220
                 ++   G A  E L+G++LPGV ALD A P  +
Sbjct:   446 GVMSHISTGGGASLELLEGKVLPGVIALDEAIPVTV 481

GO:0004618 "phosphoglycerate kinase activity" evidence=IEA;ISS

GO:0006096 "glycolysis" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009579 "thylakoid" evidence=IDA

GO:0010319 "stromule" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2205215 AT1G56190 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 69/217 (31%), Positives = 112/217 (51%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
             ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   + 
Sbjct:   263 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 322

Query:    66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
             A+ L+  A+ + +++L P D        P+   +I P+  IPDGW  +DIGP SV+    
Sbjct:   323 ATTLLAKAKARGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNE 382

Query:   125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
              +   + VIW GP+  F F  +++ G   +   L ++S+      + G  +  A+ KV  
Sbjct:   383 ALDTTQTVIWNGPMGVFEFE-KFAKGTEAVANKLAELSKKGVTTIIGGGDSVAAVEKVGV 441

Query:   184 SIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPFDI 220
             +    ++   G A  E L+G++LPGV ALD A P  +
Sbjct:   442 AGVMSHISTGGGASLELLEGKVLPGVVALDEATPVTV 478

GO:0004618 "phosphoglycerate kinase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006096 "glycolysis" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009579 "thylakoid" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2206410 PGK "phosphoglycerate kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 72/213 (33%), Positives = 110/213 (51%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
             +KP+AAI+GG  +  K   +  L +  D L+  G M F    A GL V   LVE+   D 
Sbjct:   191 KKPFAAIVGGSKVSTKIGVIESLLNTVDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLDL 250

Query:    66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
             A  L++ A+ K +++L P D        P+   +I P+  IPDGW  +DIGP S++  + 
Sbjct:   251 AKSLMEKAKAKGVSLLLPTDVVIADKFAPDANSKIVPATAIPDGWMGLDIGPDSIKTFSE 310

Query:   125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSM-ACKAIAKVS 182
              +   K +IW GP+  F F  +++ G   +   L ++S G    T+IG   +  A+ KV 
Sbjct:   311 ALDTTKTIIWNGPMGVFEFD-KFAAGTEAVAKQLAELS-GKGVTTIIGGGDSVAAVEKVG 368

Query:   183 SSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA 215
              +    ++   G A  E L+G+ LPGV ALD A
Sbjct:   369 LADKMSHISTGGGASLELLEGKPLPGVLALDEA 401

GO:0004618 "phosphoglycerate kinase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006096 "glycolysis" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA;NAS

GO:0005634 "nucleus" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

CGD|CAL0000415 PGK1 [Candida albicans (taxid:5476)]

 Score = 241 (89.9 bits), Expect = 5.1e-18, P = 5.1e-18
 Identities = 63/212 (29%), Positives = 102/212 (48%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
             E+P+ AI+GG  + +K   +  L  + D LI  G M+F     L  +P+   L ++    
Sbjct:   204 ERPFLAILGGAKVSDKIQLIDNLLDKVDMLIVGGGMAFTFKKILNKMPIGDSLFDEAGAK 263

Query:    65 AASDLIQFARDKHITILYPKDF-WCTKIHHPNQVE-IFPSHGIPDGWEPVDIGPRSVEEI 122
                 L++ A+  ++ ++ P DF    K     +      + GIPD W  +D GP+SVE  
Sbjct:   264 NVEHLVEKAKKNNVELILPVDFVTADKFDKDAKTSSATDAEGIPDNWMGLDCGPKSVELF 323

Query:   123 TSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
                + K K ++W GP   F F  +++NG   L     K ++   N+ +IG      +AK 
Sbjct:   324 QQAVAKAKTIVWNGPPGVFEFE-KFANGTKSLLDAAVKSAENG-NIVIIGGGDTATVAKK 381

Query:   182 SSSIFGLNMVESGS-AVWEFLKGRMLPGVSAL 212
                +  L+ V +G  A  E L+G+ LPGV AL
Sbjct:   382 YGVVEKLSHVSTGGGASLELLEGKDLPGVVAL 413

GO:0030446 "hyphal cell wall" evidence=IDA

GO:0006096 "glycolysis" evidence=NAS

GO:0004618 "phosphoglycerate kinase activity" evidence=ISS;NAS

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051701 "interaction with host" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044416 "induction by symbiont of host defense response" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=IEA

UNIPROTKB|P46273 PGK1 "Phosphoglycerate kinase" [Candida albicans SC5314 (taxid:237561)]

 Score = 241 (89.9 bits), Expect = 5.1e-18, P = 5.1e-18
 Identities = 63/212 (29%), Positives = 102/212 (48%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
             E+P+ AI+GG  + +K   +  L  + D LI  G M+F     L  +P+   L ++    
Sbjct:   204 ERPFLAILGGAKVSDKIQLIDNLLDKVDMLIVGGGMAFTFKKILNKMPIGDSLFDEAGAK 263

Query:    65 AASDLIQFARDKHITILYPKDF-WCTKIHHPNQVE-IFPSHGIPDGWEPVDIGPRSVEEI 122
                 L++ A+  ++ ++ P DF    K     +      + GIPD W  +D GP+SVE  
Sbjct:   264 NVEHLVEKAKKNNVELILPVDFVTADKFDKDAKTSSATDAEGIPDNWMGLDCGPKSVELF 323

Query:   123 TSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
                + K K ++W GP   F F  +++NG   L     K ++   N+ +IG      +AK 
Sbjct:   324 QQAVAKAKTIVWNGPPGVFEFE-KFANGTKSLLDAAVKSAENG-NIVIIGGGDTATVAKK 381

Query:   182 SSSIFGLNMVESGS-AVWEFLKGRMLPGVSAL 212
                +  L+ V +G  A  E L+G+ LPGV AL
Sbjct:   382 YGVVEKLSHVSTGGGASLELLEGKDLPGVVAL 413

GO:0004618 "phosphoglycerate kinase activity" evidence=ISS;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006096 "glycolysis" evidence=NAS

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0030446 "hyphal cell wall" evidence=IDA

GO:0044416 "induction by symbiont of host defense response" evidence=IDA

GO:0051701 "interaction with host" evidence=IPI

TIGR_CMR|BA_5367 BA_5367 "phosphoglycerate kinase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 239 (89.2 bits), Expect = 6.7e-18, P = 6.7e-18
 Identities = 61/209 (29%), Positives = 101/209 (48%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
             E+P+ AIIGG  + +K   +  L  + D LI  G +++  + ALG  +   L E    + 
Sbjct:   186 ERPFTAIIGGAKVKDKIGLIRHLLDKVDNLIIGGGLAYTFVKALGHEIGLSLCEDDKIEL 245

Query:    66 ASDLIQFARDKHITILYPKDFWCTK-IHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
             A + +Q A++K +    P D   T+        +I     IP  WE VDIGP++ E    
Sbjct:   246 AKEFMQLAKEKGVNFYMPVDVVITEEFSETATTKIVGIDSIPSNWEGVDIGPKTREIYAD 305

Query:   125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
              I   K V+W GP+     + ++ G +K  G     ++GT +V + G  +  A+ K   +
Sbjct:   306 VIKNSKLVVWNGPMGVFEMTPFAEG-TKAVGQALADAEGTYSV-IGGGDSAAAVEKFGMA 363

Query:   185 IFGLNMVESGSAVWEFLKGRMLPGVSALD 213
                 ++   G A  EF++G+ LPGV  L+
Sbjct:   364 DKMSHISTGGGASLEFMEGKELPGVVCLN 392

GO:0004618 "phosphoglycerate kinase activity" evidence=ISS

GO:0006096 "glycolysis" evidence=ISS

UNIPROTKB|E7ERH5 PGK1 "Phosphoglycerate kinase" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 57/217 (26%), Positives = 103/217 (47%)

Query:     1 MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVE 59
             + + D +P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L +
Sbjct:    64 LGRPDGRPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFD 123

Query:    60 KGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPR 117
             +       DL+  A    + I  P DF        N    +   + GIP GW  +D GP 
Sbjct:   124 EEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPE 183

Query:   118 SVEEITSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSM-AC 175
             S ++    +T+ K+++W GPV  F + + ++ G   L   + K +   C +T+IG     
Sbjct:   184 SSKKYAEAVTRAKQIVWNGPVGVFEWEA-FARGTKALMDEVVKATSRGC-ITIIGGGDTA 241

Query:   176 KAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
                AK ++     ++   G A  E L+G++LPGV AL
Sbjct:   242 TCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDAL 278

GO:0006096 "glycolysis" evidence=IEA

GO:0004618 "phosphoglycerate kinase activity" evidence=IEA

POMBASE|SPBC14F5.04c pgk1 "phosphoglycerate kinase Pgk1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 229 (85.7 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 59/211 (27%), Positives = 98/211 (46%)

Query:     7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
             +P+ AI+GG  + +K   +  L  + + LI  G M+F  +  L G+ +   L ++  +  
Sbjct:   203 RPFLAILGGAKVADKIQLIDNLLDKVNRLIICGGMAFTFLKVLNGMKIGDSLFDEAGSKN 262

Query:    66 ASDLIQFARDKHITILYPKDF-WCTKIHHPNQV-EIFPSHGIPDGWEPVDIGPRSVEEIT 123
                ++  A+  ++ +  P DF    K     +V       GIPDGW  +D GP+S  +  
Sbjct:   263 VESMMAKAKKNNVEVFLPVDFVTADKFDKDAKVGSATAEEGIPDGWMGLDCGPKSSAKFA 322

Query:   124 STITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
               IT  K ++W GP   F F + ++ G   +     K  +   NV ++G      +AK  
Sbjct:   323 EVITTSKTIVWNGPAGVFEFDN-FAKGTKSMLDACVKTCEAG-NVVIVGGGDTATVAKKY 380

Query:   183 SSIFGLNMVESGS-AVWEFLKGRMLPGVSAL 212
                  L+ V +G  A  E L+G+ LPGV AL
Sbjct:   381 GKEDALSHVSTGGGASLELLEGKALPGVVAL 411

GO:0004618 "phosphoglycerate kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IC

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006094 "gluconeogenesis" evidence=ISO

GO:0006096 "glycolysis" evidence=ISO

UNIPROTKB|F1NU17 PGK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 225 (84.3 bits), Expect = 4.0e-16, P = 4.0e-16
 Identities = 59/211 (27%), Positives = 101/211 (47%)

Query:     6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
             E+P+ AI+GG  + +K   +  +  + + +I  G M+F  +  L  + +   L ++  + 
Sbjct:   205 ERPFLAILGGAKVQDKIQLISNMLDKVNEMIIGGGMAFTFLKVLNNMQIGNSLFDEEGSK 264

Query:    65 AASDLIQFARDKHITILYPKDF-WCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
                DL+  A    + I  P DF    K   H    E   + GIP GW  +D GP SV++ 
Sbjct:   265 IVKDLMAKAEKNGVKITLPVDFITADKFDEHAQTGEATVASGIPAGWMGLDCGPESVKKF 324

Query:   123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSM-ACKAIAKV 181
                + + K+++W GPV      ++S G   L   + +V+   C +T+IG        AK 
Sbjct:   325 VEVVGRAKQIVWNGPVGVFEWDKFSKGTKALMDKVVEVTGKGC-ITIIGGGDTATCCAKW 383

Query:   182 SSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
             ++     ++   G A  E L+G++LPGV AL
Sbjct:   384 NTEDKVSHVSTGGGASLELLEGKVLPGVDAL 414

GO:0004618 "phosphoglycerate kinase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.2.3	LOW CONFIDENCE prediction!
3rd Layer	2.1.1	0.691
3rd Layer	2.7.2	LOW CONFIDENCE prediction!
3rd Layer	2.1.1.33	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023235001	RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (581 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018496001	RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (254 aa)		•	•				•		0.564
	GSVIVG00036055001	RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (321 aa)		•					•		0.483
	GSVIVG00024314001	RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (254 aa)		•					•		0.483
	GSVIVG00038611001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (573 aa)							•		0.455
	26N20_30	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (493 aa)							•		0.455
	GSVIVG00025495001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (475 aa)							•		0.455
	GSVIVG00024850001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (491 aa)							•		0.455
	GSVIVG00023818001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (569 aa)							•		0.455
	GSVIVG00021710001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (264 aa)							•		0.455
	GSVIVG00021709001	RecName- Full=Pyruvate kinase; EC=2.7.1.40; (267 aa)							•		0.455

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	416
PLN03034	481	PLN03034, PLN03034, phosphoglycerate kinase; Provi	1e-29
cd00318	397	cd00318, Phosphoglycerate_kinase, Phosphoglycerate	6e-27
PLN02282	401	PLN02282, PLN02282, phosphoglycerate kinase	3e-26
PRK00073	389	PRK00073, pgk, phosphoglycerate kinase; Provisiona	2e-24
pfam00162	383	pfam00162, PGK, Phosphoglycerate kinase	1e-22
COG0126	395	COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydr	4e-22
PRK13962	645	PRK13962, PRK13962, bifunctional phosphoglycerate	2e-21
PTZ00005	417	PTZ00005, PTZ00005, phosphoglycerate kinase; Provi	3e-21
PRK00121	202	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransfe	7e-20
pfam02390	198	pfam02390, Methyltransf_4, Putative methyltransfer	8e-20
COG0220	227	COG0220, COG0220, Predicted S-adenosylmethionine-d	6e-18
TIGR00091	194	TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methylt	6e-15

>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional

 Score =  119 bits (300), Expect = 1e-29
 Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+AAI+GG  + +K   +  L  +CD L+  G M F    A GL V   LVE+   + 
Sbjct: 266 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 325

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A+ L+  A+ K +++L P D        P+   +I P+  IPDGW  +DIGP SV+    
Sbjct: 326 ATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNE 385

Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
            +   + VIW GP+  F F  +++ G   +   L ++S       + G  +  A+ KV  
Sbjct: 386 ALDTTQTVIWNGPMGVFEF-EKFAVGTEAVAKKLAELSGKGVTTIIGGGDSVAAVEKVGV 444

Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFP 217
           +    ++   G A  E L+G+ LPGV ALD A P
Sbjct: 445 ADVMSHISTGGGASLELLEGKELPGVVALDEATP 478

Length = 481

>gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate

 Score =  110 bits (278), Expect = 6e-27
 Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 11/215 (5%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+P+ AI+GG  + +K   +  L  + D LI  G M+F  + A G+ +   L E+   + 
Sbjct: 188 ERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKSLFEEDGIEL 247

Query: 66  ASDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A  L++ A+ K + I+ P D     K       ++    GIPDGW  +DIGP+++E    
Sbjct: 248 AKSLLEKAKAKGVKIVLPVDVVVADKFKADANTKVVTDDGIPDGWMGLDIGPKTIELFAE 307

Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAK 180
            I K K ++W GP+  F F   ++ G   +   +   ++     ++IG   + A      
Sbjct: 308 VIRKAKTIVWNGPMGVFEF-PAFAKGTKAIADAIAAATKAGA-FSIIGGGDTAAAAEKFG 365

Query: 181 VSSSIFGLNMVES-GSAVWEFLKGRMLPGVSALDR 214
           ++  I   + V + G A  E L+G+ LPGV+AL+ 
Sbjct: 366 LADKI---SHVSTGGGASLELLEGKELPGVAALEE 397

This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients. . Length = 397

>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase

 Score =  108 bits (272), Expect = 3e-26
 Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 3/212 (1%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           +KP+AAI+GG  +  K   +  L  + D L+  G M F    A G  V   LVE+   D 
Sbjct: 191 KKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGSSLVEEDKLDL 250

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A+ LI+ A+ K +++L P D        P+   ++ P+  IPDGW  +DIGP S++  + 
Sbjct: 251 ATSLIEKAKAKGVSLLLPTDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSIKTFSE 310

Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
            +   K +IW GP+  F F  +++ G   +   L ++S       + G  +  A+ KV  
Sbjct: 311 ALDTTKTIIWNGPMGVFEF-EKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL 369

Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALDRA 215
           +    ++   G A  E L+G+ LPGV ALD A
Sbjct: 370 ADKMSHISTGGGASLELLEGKPLPGVLALDDA 401

Length = 401

>gnl|CDD|234613 PRK00073, pgk, phosphoglycerate kinase; Provisional

 Score =  103 bits (259), Expect = 2e-24
 Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 21/217 (9%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+P+ AI+GG  + +K   L  L  + D LI  G M+   + A G  V   LVE+   D 
Sbjct: 184 ERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDT 243

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
           A +L++ A++K + I  P D    K     +  +     IPD W  +DIGP+++E     
Sbjct: 244 AKELLEKAKEKGVKIPLPVDVVVAKEFSDAEATVVSVDEIPDDWMILDIGPKTIELFAEI 303

Query: 126 ITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCK-VSQGTCNVTVIG---SMACKAIAK 180
           I   K ++W GP+  F F   ++ G    T  + K +++ T   ++IG   + A      
Sbjct: 304 IKDAKTIVWNGPMGVFEF-ENFAKG----TKAVAKAIAESTA-FSIIGGGDTAAAVEKLG 357

Query: 181 VSSSIF----GLNMVESGSAVWEFLKGRMLPGVSALD 213
           ++        G      G A  EFL+G+ LPGV+AL+
Sbjct: 358 LADKFSHISTG------GGASLEFLEGKELPGVAALE 388

Length = 389

>gnl|CDD|215761 pfam00162, PGK, Phosphoglycerate kinase

 Score = 98.3 bits (246), Expect = 1e-22
 Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 3/146 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+P+ AI+GG  + +K   +  L  + D L+  G M+   + A G  +   LVE+   + 
Sbjct: 187 ERPFVAILGGAKVSDKIKVIENLLDKVDKLLIGGGMANTFLKAQGYNIGKSLVEEDLIET 246

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A +L++ A++K + I+ P D         + + ++     IPDGW  +DIGP+++E    
Sbjct: 247 AKELLEKAKEKGVKIVLPVDVVVADEFSADAETKVVDVDEIPDGWMGLDIGPKTIELFAE 306

Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNG 149
            I   K V+W GP+  F F   ++ G
Sbjct: 307 VIKDAKTVVWNGPMGVFEF-ENFAKG 331

Length = 383

>gnl|CDD|223204 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]

 Score = 96.8 bits (242), Expect = 4e-22
 Identities = 68/222 (30%), Positives = 103/222 (46%), Gaps = 26/222 (11%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+P+ AI+GG  + +K   +  L  + D LI  G M+   + A G  V   LVE    D 
Sbjct: 190 ERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGYDVGKSLVEFDLIDG 249

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
           A +L++ A+DK   I+ P D    K              IPD    +DIGP+++E     
Sbjct: 250 AKELLEKAKDK---IVLPVDVVVAK-EFSRDAPATVKLEIPDDLMILDIGPKTIELFAEI 305

Query: 126 ITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCK-VSQGTCNVTVIG---SMACKAIAK 180
           I   K ++W GP+  F F   ++ G    T  + K +++ +   ++IG   + A  AI K
Sbjct: 306 IKGAKTIVWNGPMGVFEF-ENFAKG----TEEVAKAIAKSSGAFSIIGGGDTAA--AIDK 358

Query: 181 VSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALDRAFP 217
                 GL    S     G A  EFL+G+ LPGV AL+ +  
Sbjct: 359 -----LGLADKISHISTGGGASLEFLEGKELPGVEALEESAK 395

Length = 395

>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional

 Score = 95.9 bits (239), Expect = 2e-21
 Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 24/218 (11%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+ AI+GG  + +K   +  L  + D L+  G M++  + A G  V   LVE+   D 
Sbjct: 187 QRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEEDKLDL 246

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEI--FPSHGIPDGWEPVDIGPRSVEEIT 123
           A +L+  A +K + +L P D    K    N  E    PS  IP+ W  +DIGP ++E   
Sbjct: 247 AKELLAKAEEKGVKLLLPVDSVVAK-EFKNDAEHKVVPSDAIPEDWMGLDIGPETIELFA 305

Query: 124 STITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIA 179
             I   K ++W GP+  F F + ++ G      +   V++    +T+IG   S A  A+ 
Sbjct: 306 KKIADAKTIVWNGPMGVFEFDN-FAEGTRA---VAEAVAESGA-ITIIGGGDSAA--AVE 358

Query: 180 KVSSSIFGL-----NMVESGSAVWEFLKGRMLPGVSAL 212
           K      G      ++   G A  EFL+G++LPG++ L
Sbjct: 359 K-----LGFADKMSHISTGGGASLEFLEGKVLPGIACL 391

Length = 645

>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional

 Score = 94.8 bits (236), Expect = 3e-21
 Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 19/218 (8%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           ++P+ AI+GG  + +K   +  L  + D +I  G M+F     L  +P+   L ++    
Sbjct: 205 QRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAK 264

Query: 65  AASDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
              ++++ A++K++ I  P DF C  K  +    ++     GIPDGW  +D GP+S+EE 
Sbjct: 265 IVKEIMEKAKEKNVKIHLPVDFVCADKFDNNANTKVVTDKEGIPDGWMGLDAGPKSIEEF 324

Query: 123 TSTITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG-----SMA-- 174
              I + K ++W GP   F     ++ G+  +   + K ++    +T++G     S+   
Sbjct: 325 AEAILRAKTIVWNGPQGVFEM-PNFAKGSIAMLDAVVKATEKGA-ITIVGGGDTASLVEK 382

Query: 175 CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
             A  KVS    G      G A  E L+G+ LPGV AL
Sbjct: 383 TGAANKVSHVSTG------GGASLELLEGKELPGVVAL 414

Length = 417

>gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed

 Score = 86.8 bits (216), Expect = 7e-20
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 7/154 (4%)

Query: 212 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCR 267
             R  P  +DW+  + + A P+ ++IG G G FL+ MA+   D+NF+G+E     V    
Sbjct: 23  WPRLSPAPLDWAELFGNDA-PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKAL 81

Query: 268 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 327
             ++  G+TN   +  +A      +     G L  + +  P+P   +  H+ R+VQ   +
Sbjct: 82  KKIEEEGLTNLRLLCGDAVEVLLDMFP--DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFL 139

Query: 328 EAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 361
              +  L   G++   +D E     M +     G
Sbjct: 140 ALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEG 173

Length = 202

>gnl|CDD|217012 pfam02390, Methyltransf_4, Putative methyltransferase

 Score = 86.6 bits (215), Expect = 8e-20
 Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 21/202 (10%)

Query: 218 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSL-QL 272
           F +DW A + +  QPL ++IG G G FL+ MA+K  D  F+G+E     V      +  L
Sbjct: 9   FTLDWQALFGNE-QPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIAL 67

Query: 273 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 332
            G+ N   +  +A     ++     G L  + I  P+P   +  H+ R++Q   ++  + 
Sbjct: 68  RGLQNLRILCGDAMKLLPNLFP--DGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYAR 125

Query: 333 LLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN---SFGV 389
           +L   G + L +D+EE    M +   E+   + +L          +   L E+      +
Sbjct: 126 VLKPGGVLHLATDVEEYFEWMLEHLSEHPLFERIL----------ESTDLNEDPITDLRI 175

Query: 390 RSDWEQHVIDRGAPMYRLMLSK 411
            +++EQ V   G P++ L+  K
Sbjct: 176 STEYEQKVQRLGGPIFELIFIK 197

This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity. Length = 198

>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

 Score = 82.0 bits (203), Expect = 6e-18
 Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 19/202 (9%)

Query: 220 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI 275
            DWSA + +   P+V++IG G G FL+ MA+K  + NFLG+E+    V      ++  G+
Sbjct: 38  GDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL 97

Query: 276 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 335
            N   +  +A      ++    G L  + I  P+P   +  H+ R+ Q   ++  +  L 
Sbjct: 98  KNLRLLCGDAVEVLDYLIP--DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLK 155

Query: 336 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDE---CDTKTNQGGWLGENSFGVRSD 392
             G +   +D EE    M  + LE+        +D         N      E  F     
Sbjct: 156 PGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPPDNNPVTEYEQKF----- 210

Query: 393 WEQHVIDRGAPMYRLMLSKPSC 414
                   G P+Y L   K   
Sbjct: 211 -----RRLGHPVYDLEFIKKKG 227

Length = 227

>gnl|CDD|161703 TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methyltransferase

 Score = 72.8 bits (179), Expect = 6e-15
 Identities = 41/198 (20%), Positives = 81/198 (40%), Gaps = 20/198 (10%)

Query: 221 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGIT 276
           D++  +     PL ++IG G G FL+ MA++  D NFLG+E+    V    +     G+ 
Sbjct: 8   DFATVF-GNKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK 66

Query: 277 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 336
           N + +  +A            G L  V +  P+P   +  ++ R+ Q   ++  +++L  
Sbjct: 67  NLHVLCGDANELLDKFFPD--GSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKK 124

Query: 337 DGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVR---SDW 393
            G +  ++D E +   M +   E                T++   L  +        +++
Sbjct: 125 GGVIHFKTDNEPLFEDMLKVLSEND----------LFENTSKSTDLNNSPLSRPRNMTEY 174

Query: 394 EQHVIDRGAPMYRLMLSK 411
           EQ     G P++ L   +
Sbjct: 175 EQRFERLGHPVFDLCFER 192

This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria. It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In E. coli, this protein flanks the DNA repair protein MutY, also called micA [Protein synthesis, tRNA and rRNA base modification]. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	416
PLN03034	481	phosphoglycerate kinase; Provisional	100.0
COG0126	395	Pgk 3-phosphoglycerate kinase [Carbohydrate transp	100.0
cd00318	397	Phosphoglycerate_kinase Phosphoglycerate kinase (P	100.0
PLN02282	401	phosphoglycerate kinase	100.0
PRK00073	389	pgk phosphoglycerate kinase; Provisional	100.0
PTZ00005	417	phosphoglycerate kinase; Provisional	100.0
KOG1367	416	consensus 3-phosphoglycerate kinase [Carbohydrate	100.0
PRK13962	645	bifunctional phosphoglycerate kinase/triosephospha	100.0
PF00162	384	PGK: Phosphoglycerate kinase; InterPro: IPR001576	100.0
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	100.0
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	100.0
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	100.0
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.97
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.97
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.92
KOG3115	249	consensus Methyltransferase-like protein [General	99.76
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.6
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.49
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.48
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.45
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.45
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.45
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.44
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.43
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.36
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.36
PLN02244	340	tocopherol O-methyltransferase	99.35
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.35
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.34
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.34
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.34
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.33
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.33
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.32
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.32
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.32
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.31
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.29
PRK07402	196	precorrin-6B methylase; Provisional	99.29
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.29
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.29
COG4123	248	Predicted O-methyltransferase [General function pr	99.29
PRK04266	226	fibrillarin; Provisional	99.28
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.27
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.27
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.27
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.25
PLN02490	340	MPBQ/MSBQ methyltransferase	99.25
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.25
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.24
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.24
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.23
PRK11207	197	tellurite resistance protein TehB; Provisional	99.23
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.22
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.19
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.19
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.19
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.18
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.17
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.17
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.17
KOG1271	227	consensus Methyltransferases [General function pre	99.16
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.16
PRK05785	226	hypothetical protein; Provisional	99.15
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.15
PRK08317	241	hypothetical protein; Provisional	99.15
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.15
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.15
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.14
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.14
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.14
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.13
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.13
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.12
PRK06922	677	hypothetical protein; Provisional	99.12
COG2890	280	HemK Methylase of polypeptide chain release factor	99.12
PLN02336	475	phosphoethanolamine N-methyltransferase	99.11
PRK14968	188	putative methyltransferase; Provisional	99.11
PRK14967	223	putative methyltransferase; Provisional	99.1
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.09
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.07
PRK01581	374	speE spermidine synthase; Validated	99.07
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.07
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.07
PHA03411	279	putative methyltransferase; Provisional	99.06
TIGR00438	188	rrmJ cell division protein FtsJ.	99.06
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.06
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.06
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.05
PRK00811	283	spermidine synthase; Provisional	99.05
PRK04457	262	spermidine synthase; Provisional	99.04
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.03
PRK12335	287	tellurite resistance protein TehB; Provisional	99.03
PLN03075	296	nicotianamine synthase; Provisional	99.03
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.03
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.02
PRK03612	521	spermidine synthase; Provisional	99.02
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.01
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.0
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.0
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.99
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.99
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.97
PTZ00146	293	fibrillarin; Provisional	98.97
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.96
PLN02336	475	phosphoethanolamine N-methyltransferase	98.94
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.94
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.94
PLN02366	308	spermidine synthase	98.93
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.93
TIGR03438	301	probable methyltransferase. This model represents	98.93
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.93
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.93
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.92
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.91
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.91
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.9
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.9
KOG4300	252	consensus Predicted methyltransferase [General fun	98.89
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.89
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.89
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.89
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.88
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.87
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.85
PRK06202	232	hypothetical protein; Provisional	98.85
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.84
PLN02672	1082	methionine S-methyltransferase	98.83
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.82
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.82
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.81
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.8
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.78
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.76
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.76
PHA03412	241	putative methyltransferase; Provisional	98.74
KOG2361	264	consensus Predicted methyltransferase [General fun	98.73
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.73
COG4122	219	Predicted O-methyltransferase [General function pr	98.72
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.72
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.72
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.72
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.72
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.7
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.69
PLN02476	278	O-methyltransferase	98.69
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.66
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.66
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.64
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.64
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.62
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.62
KOG3010	261	consensus Methyltransferase [General function pred	98.61
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.61
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.57
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.57
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.56
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.55
PLN02823	336	spermine synthase	98.54
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.52
KOG2904	328	consensus Predicted methyltransferase [General fun	98.5
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.49
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.48
KOG2899	288	consensus Predicted methyltransferase [General fun	98.44
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.41
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.41
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.41
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.39
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.39
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.38
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.34
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.29
COG2521	287	Predicted archaeal methyltransferase [General func	98.29
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.28
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.26
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.21
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.21
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.21
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.17
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.15
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.14
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.14
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.13
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.1
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.08
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.06
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.06
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.05
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.04
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.03
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.99
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.96
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.93
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.93
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.9
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.87
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.85
PRK04148	134	hypothetical protein; Provisional	97.85
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.82
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.82
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.81
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.77
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.75
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.74
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.69
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.68
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.68
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.63
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.63
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.63
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.62
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.58
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.57
KOG1331	293	consensus Predicted methyltransferase [General fun	97.56
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.55
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.49
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.49
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.49
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.45
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.45
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.45
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.44
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.41
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.4
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.39
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.37
KOG2940	325	consensus Predicted methyltransferase [General fun	97.36
COG2520	341	Predicted methyltransferase [General function pred	97.22
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.22
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.19
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.17
PRK00536	262	speE spermidine synthase; Provisional	97.12
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	97.11
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.02
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	96.93
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.88
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.86
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	96.81
PF13679	141	Methyltransf_32: Methyltransferase domain	96.8
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.69
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.51
KOG2730	263	consensus Methylase [General function prediction o	96.5
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.47
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.43
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.15
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.1
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	96.08
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	96.02
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.01
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	95.97
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	95.8
PRK10742	250	putative methyltransferase; Provisional	95.75
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	95.72
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	95.56
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	95.53
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	95.09
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	95.07
PRK13699	227	putative methylase; Provisional	95.04
COG2384	226	Predicted SAM-dependent methyltransferase [General	95.01
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	94.98
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	94.82
KOG3201	201	consensus Uncharacterized conserved protein [Funct	94.6
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	94.59
KOG2352	482	consensus Predicted spermine/spermidine synthase [	94.38
COG4076	252	Predicted RNA methylase [General function predicti	94.31
PRK11524	284	putative methyltransferase; Provisional	94.15
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	94.12
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	94.04
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	93.97
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	93.72
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	93.17
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	93.02
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	92.93
COG4798	238	Predicted methyltransferase [General function pred	92.93
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	92.87
PLN02668	386	indole-3-acetate carboxyl methyltransferase	92.87
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	92.4
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.29
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	91.92
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	91.83
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	91.65
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	91.47
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	91.34
COG3897	218	Predicted methyltransferase [General function pred	91.12
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	90.83
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	90.74
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	89.87
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	89.81
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	88.04
COG0286	489	HsdM Type I restriction-modification system methyl	86.4
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	85.49
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	85.08
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	84.57
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	83.98
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	83.8
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	82.7
COG4301	321	Uncharacterized conserved protein [Function unknow	81.88
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	80.1

>PLN03034 phosphoglycerate kinase; Provisional

Probab=100.00  E-value=1.5e-62  Score=494.98  Aligned_cols=214  Identities=31%  Similarity=0.536  Sum_probs=198.7

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (416)
                      +++|+||+++|+|||||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus       262 ~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~  341 (481)
T PLN03034        262 VSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLL  341 (481)
T ss_pred             HcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcchhhcChhhhHHHHHHHHHHHhcCCEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (416)
Q Consensus        82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (416)
                      ||+||+|++++ .+.+..++++++||++||++||||+|++.|++++..|+||+||||||+||+++|+.||++|+++++++
T Consensus       342 lPvD~v~a~~~~~~~~~~~~~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~akTI~WNGPmGvFE~~~Fa~GT~~l~~aia~~  421 (481)
T PLN03034        342 LPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNEALDTTQTVIWNGPMGVFEFEKFAVGTEAVAKKLAEL  421 (481)
T ss_pred             CCceEEEecccCCCCCeEEeehhcCCCCCEEEecCHHHHHHHHHHHhhCCEEEEECCcccccCCcchHHHHHHHHHHHHh
Confidence            99999999876 33445566889999999999999999999999999999999999999999999999999999999997


Q ss_pred             hcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccccCcc
Q 014919          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPF  218 (416)
Q Consensus       161 ~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~~~p~  218 (416)
                      ++++ .+||+|||+   ++..+|+.++++|+||  ||||+|+||+|+.+|++++|.+..|+
T Consensus       422 ~~~~-a~sIvGGGDt~aAi~~~g~~~~~shiST--GGGA~Le~LeGk~LPgv~aL~~~~~~  479 (481)
T PLN03034        422 SGKG-VTTIIGGGDSVAAVEKVGVADVMSHIST--GGGASLELLEGKELPGVVALDEATPV  479 (481)
T ss_pred             hcCC-CeEEEcCcHHHHHHHHcCCccceeEEeC--cHHHHHHHHcCCCCcHHHHHhhcCCc
Confidence            6554 488988886   4456788888999999  89999999999999999999887764

>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.2e-63  Score=481.59  Aligned_cols=205  Identities=28%  Similarity=0.475  Sum_probs=187.8

Q ss_pred             CCCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014919            1 MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (416)
Q Consensus         1 ~~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (416)
                      ++++|+||+++|+|||||||||+||+||+++||+|||||+||||||+|+|++||+|++|.+.++.|++|++++++   +|
T Consensus       185 ~l~~p~rP~vaIlGGaKVsdki~vienLl~kaD~liigGgma~tFl~A~G~~vG~sl~E~~~~~~Ak~ll~k~~~---~I  261 (395)
T COG0126         185 ALENPERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGYDVGKSLVEFDLIDGAKELLEKAKD---KI  261 (395)
T ss_pred             HhcCCCCceEEEeeccccchHHHHHHHHHHhcCeEEecchHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhCC---cE
Confidence            368999999999999999999999999999999999999999999999999999999999999999999999965   89


Q ss_pred             ecceeEEEecCCCCC-ceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHh
Q 014919           81 LYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCK  159 (416)
Q Consensus        81 ~lP~D~~v~~~~~~~-~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~  159 (416)
                      +||+|++|++++... ..... . +||++||++||||+|++.|++++..|+||+|||||||||+++|+.||.++++++++
T Consensus       262 ~lPvD~~v~~~f~~~~~~~~~-~-~i~~~~~~lDIGp~Ti~~~~~~i~~AktivwNGP~GVfE~~~Fa~GT~~v~~aia~  339 (395)
T COG0126         262 VLPVDVVVAKEFSRDAPATVK-L-EIPDDLMILDIGPKTIELFAEIIKGAKTIVWNGPMGVFEFENFAKGTEEVAKAIAK  339 (395)
T ss_pred             ECcceeEEccccccccccccc-c-CCCCCccccccCHHHHHHHHHHHhhCCEEEEeCCccceecchhhhhHHHHHHHHHh
Confidence            999999999998433 33332 3 99999999999999999999999999999999999999999999999999999998


Q ss_pred             hhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCccccccc
Q 014919          160 VSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA  215 (416)
Q Consensus       160 ~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~~  215 (416)
                      +  + .++||+|||+   ++..+|+.++++|+||  ||||+|+||+|+.+|++++|.+.
T Consensus       340 ~--~-~a~SiiGGGdt~aAi~~~G~~d~~shIST--GGGAsLe~leGk~LPgv~aL~~~  393 (395)
T COG0126         340 S--S-GAFSIIGGGDTAAAIDKLGLADKISHIST--GGGASLEFLEGKELPGVEALEES  393 (395)
T ss_pred             c--C-CCeEEECCcHHHHHHHHcCccccCceEec--CchHHHHHhcCCCcchHHHHhhc
Confidence            6  2 2589999986   4457889889999999  89999999999999999998754

>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate

Probab=100.00  E-value=1.9e-62  Score=489.03  Aligned_cols=209  Identities=27%  Similarity=0.529  Sum_probs=194.4

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (416)
                      +++|+||+++|+|||||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.++.|++|++++++++++|+
T Consensus       184 l~~p~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFL~A~G~~iG~sl~e~~~i~~a~~il~~a~~~~~~I~  263 (397)
T cd00318         184 LENPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKSLFEEDGIELAKSLLEKAKAKGVKIV  263 (397)
T ss_pred             HcCCCCCeEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCccccChhhHHHHHHHHHHhHhcCCEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (416)
Q Consensus        82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (416)
                      ||+|++|++++ .+.+..++++++||++||++||||+|++.|++++..|+||+||||||+||+++|+.||++|++++++.
T Consensus       264 lPvD~~v~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~  343 (397)
T cd00318         264 LPVDVVVADKFKADANTKVVTDDGIPDGWMGLDIGPKTIELFAEVIRKAKTIVWNGPMGVFEFPAFAKGTKAIADAIAAA  343 (397)
T ss_pred             CCceEEEeeccCCCCceEEEecccCCCCCEEEeeCHHHHHHHHHHHhhCCEEEEECCCcCccCCcccHHHHHHHHHHHHh
Confidence            99999999875 23444566889999999999999999999999999999999999999999999999999999999997


Q ss_pred             hcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCccccc
Q 014919          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD  213 (416)
Q Consensus       161 ~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~  213 (416)
                      ++++ .+||+|||+   ++..+|+.++++|+||  ||||+|+||+|+.+|++++|.
T Consensus       344 ~~~~-a~sivGGGdt~aa~~~~g~~~~~shvST--GGGA~Le~LeGk~LPgi~aL~  396 (397)
T cd00318         344 TKAG-AFSIIGGGDTAAAAEKFGLADKISHVST--GGGASLELLEGKELPGVAALE  396 (397)
T ss_pred             ccCC-CEEEEeCcHHHHHHHHcCCCCCceEEcC--chHHHHHHHcCCCCchHHhhc
Confidence            6444 489999886   4456788888999999  899999999999999999885

This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.

>PLN02282 phosphoglycerate kinase

Probab=100.00  E-value=3.8e-62  Score=486.80  Aligned_cols=210  Identities=30%  Similarity=0.519  Sum_probs=194.7

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (416)
                      +++|+||+++|+|||||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus       187 l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~iG~sl~e~d~i~~a~~il~~a~~~g~~I~  266 (401)
T PLN02282        187 VANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGSSLVEEDKLDLATSLIEKAKAKGVSLL  266 (401)
T ss_pred             hcCCCCCeEEEEcCCcHHhHHHHHHHHHHhhhhheeccHHHHHHHHHcCCCcChhhcChhhHHHHHHHHHHHHhcCCEEe
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (416)
Q Consensus        82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (416)
                      ||+||+|++++ .+.+..++++++||++||++||||+|++.|+++|..|+||+||||||+||+++|+.||++|++++++.
T Consensus       267 lPvD~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~  346 (401)
T PLN02282        267 LPTDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSIKTFSEALDTTKTIIWNGPMGVFEFEKFAAGTEAIAKKLAEL  346 (401)
T ss_pred             CCceEEEecccCCCCCeEEeehhcCCCCCeeeccCHHHHHHHHHHHhhCCEEEEECCcCCccCcchhHHHHHHHHHHHHh
Confidence            99999999875 23344566789999999999999999999999999999999999999999999999999999999997


Q ss_pred             hcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccc
Q 014919          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (416)
Q Consensus       161 ~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~  214 (416)
                      ++++ .+||+|||+   ++..+|+.++++|+||  ||||+|+||+|+.+|++++|.+
T Consensus       347 t~~~-a~sivGGGdt~aA~~~~g~~~~~shvST--GGGA~Le~LeGk~LPgi~aL~~  400 (401)
T PLN02282        347 SGKG-VTTIIGGGDSVAAVEKVGLADKMSHIST--GGGASLELLEGKPLPGVLALDD  400 (401)
T ss_pred             hcCC-CEEEEeCcHHHHHHHHcCCcCCceEEeC--chHHHHHHHcCCCcchHHHhhc
Confidence            6444 488888876   4456788888999999  8999999999999999999864

>PRK00073 pgk phosphoglycerate kinase; Provisional

Probab=100.00  E-value=3.4e-61  Score=478.94  Aligned_cols=206  Identities=28%  Similarity=0.509  Sum_probs=192.5

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (416)
                      +++|+||+++|+|||||||||++|+||+++||+|++||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus       180 l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~~~D~liigG~ma~tFl~A~G~~ig~sl~e~~~i~~a~~il~~a~~~~~~i~  259 (389)
T PRK00073        180 LENPERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIP  259 (389)
T ss_pred             hcCCCCCeEEEEcCccHHhHHHHHHHHHHhhhhheeChHHHHHHHHHcCCCcChhhcchhhHHHHHHHHHHHHhcCCEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCCCCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhhh
Q 014919           82 YPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVS  161 (416)
Q Consensus        82 lP~D~~v~~~~~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~~  161 (416)
                      ||+|++|++++.+.+..++++++||++||++||||+|++.|+++|..|+||+||||||+||+++|+.||++|++++++.+
T Consensus       260 lPvD~vv~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akti~wNGP~GvfE~~~F~~GT~~l~~aia~~~  339 (389)
T PRK00073        260 LPVDVVVAKEFSDAEATVVSVDEIPDDWMILDIGPKTIELFAEIIKDAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEST  339 (389)
T ss_pred             CCCeeEEeeccCCCceEEeEcccCCCCCeeeecCHHHHHHHHHHHhhCCEEEEECCCCccccccchHHHHHHHHHHHhcC
Confidence            99999999876444555668899999999999999999999999999999999999999999999999999999998843


Q ss_pred             cCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCccccc
Q 014919          162 QGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD  213 (416)
Q Consensus       162 ~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~  213 (416)
                          ++||+|||+   ++..+|+.++++|+||  ||||+|+||+|+.+|++++|.
T Consensus       340 ----a~sivGGGdt~aa~~~~g~~~~~shiST--GGGA~Le~LeGk~LPgv~aL~  388 (389)
T PRK00073        340 ----AFSIIGGGDTAAAVEKLGLADKFSHIST--GGGASLEFLEGKELPGVAALE  388 (389)
T ss_pred             ----CeEEEcCCHHHHHHHHcCCCCCccEEcC--CcHHHHHHHcCCCcchHHHhc
Confidence                489999886   4456888889999999  899999999999999999885

>PTZ00005 phosphoglycerate kinase; Provisional

Probab=100.00  E-value=9.8e-61  Score=478.82  Aligned_cols=210  Identities=25%  Similarity=0.532  Sum_probs=192.3

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHH-cCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHA-LGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a-~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (416)
                      +++|+||+++|+|||||||||.+|+||+++||+|++||+||||||+| +|++||+|++|++.++.|++|+++++++|++|
T Consensus       201 ~~~p~rP~vaIlGGaKvsdKi~vl~~Ll~k~D~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I  280 (417)
T PTZ00005        201 LENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKI  280 (417)
T ss_pred             hcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEE
Confidence            67999999999999999999999999999999999999999999999 68999999999999999999999999999999


Q ss_pred             ecceeEEEecCCC-CCceeee-cCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHH
Q 014919           81 LYPKDFWCTKIHH-PNQVEIF-PSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (416)
Q Consensus        81 ~lP~D~~v~~~~~-~~~~~~~-~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (416)
                      +||+|++|++++. +.+..++ +.++||++||++||||+|+++|++++..|+||+||||||+||+++|+.||++|+++++
T Consensus       281 ~lPvD~~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akTV~wNGP~GvFE~~~F~~GT~~i~~aia  360 (417)
T PTZ00005        281 HLPVDFVCADKFDNNANTKVVTDKEGIPDGWMGLDAGPKSIEEFAEAILRAKTIVWNGPQGVFEMPNFAKGSIAMLDAVV  360 (417)
T ss_pred             eCCceEEEecccCCCCCeEEecCccCCCCCCEEeccCHHHHHHHHHHHhhCCEEEEECCCccccCCcchHHHHHHHHHHH
Confidence            9999999998752 3343344 5678999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccc
Q 014919          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (416)
Q Consensus       159 ~~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~  214 (416)
                      +.++++ .+||+|||+   ++..+|+.++++|+||  ||||+|+||+|+.+|++++|.+
T Consensus       361 ~~t~~~-a~sivGGGdt~aAi~~~g~~~~~shvST--GGGA~Le~LeGk~LPgv~aL~~  416 (417)
T PTZ00005        361 KATEKG-AITIVGGGDTASLVEKTGAANKVSHVST--GGGASLELLEGKELPGVVALSN  416 (417)
T ss_pred             HhccCC-CEEEEeCcHHHHHHHHcCCCCCCceEcC--chHHHHHHHcCCCcchHHHhhc
Confidence            866444 489988875   4457788888999999  8999999999999999999864

>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.7e-61  Score=452.22  Aligned_cols=210  Identities=27%  Similarity=0.513  Sum_probs=194.5

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHc-CCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDAASDLIQFARDKHITI   80 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~-g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (416)
                      ++||.|||+||+||+||+|||++|+||+++||.+||||+||||||+.+ |++||+|++|++..+.+++|+++|+++|++|
T Consensus       199 lenp~rPFlaIlGGaKVadKIqlI~nLldkv~~liigGGMaftFlKvl~~~eiG~Sl~de~g~e~v~~l~~kak~~~v~i  278 (416)
T KOG1367|consen  199 LENPVRPFLAILGGAKVADKIQLIENLLDKVNELIIGGGMAFTFLKVLNGMEIGKSLFDEEGAEIVKDLMEKAKAKGVRI  278 (416)
T ss_pred             HcCCCcchhhhhcCchhhhHHHHHHHHHhhcceEEEcCceeehHHHHhCCcchhhhhhhhhhHHHHHHHHHHHHHcCcEE
Confidence            689999999999999999999999999999999999999999999997 6999999999999999999999999999999


Q ss_pred             ecceeEEEecCC-CCCceeeec-CCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHH
Q 014919           81 LYPKDFWCTKIH-HPNQVEIFP-SHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (416)
Q Consensus        81 ~lP~D~~v~~~~-~~~~~~~~~-~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (416)
                      +||+||++++.+ +++....++ .+.||+|||+|||||.|++.|++.+.+++||+||||+|+||++.|++||.+|.+++.
T Consensus       279 ~lPvDfv~adkf~~da~s~~~ta~~gIp~g~mgLD~GPes~k~fa~~v~~aKtIvWNGP~GvfE~~~Fa~GTeal~d~~v  358 (416)
T KOG1367|consen  279 LLPVDFVIADKFAEDANSKQVTAEEGIPDGWMGLDIGPESIKMFAEAVATAKTIVWNGPPGVFEFEKFAAGTEALMDALV  358 (416)
T ss_pred             EeeeeeeeeccccCccccceeccccCCCCCccccccChHHHHHHHHHHhhhhEEEecCCCcccchhhhhhhHHHHHHHHH
Confidence            999999999887 444444444 347999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccc
Q 014919          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (416)
Q Consensus       159 ~~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~  214 (416)
                      +++..+. .+|+||++   ++..+|.+|+++|+||  ||||++|.++|+.+|++.+|..
T Consensus       359 ~~t~~G~-~tiiGGGDTata~~k~g~~dk~ShVST--GGGasLeLLeGK~LPGv~aLs~  414 (416)
T KOG1367|consen  359 KLTGKGV-TTIIGGGDTATACKKFGTEDKVSHVST--GGGASLELLEGKVLPGVDALSE  414 (416)
T ss_pred             HHhcCCc-EEEEcCCcHHHHHHHhCcccceeeeec--CCceehhhhcCCcCcchhhhcc
Confidence            9887775 78888764   5578999999999999  8999999999999999998864

>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional

Probab=100.00  E-value=1.5e-58  Score=485.86  Aligned_cols=218  Identities=26%  Similarity=0.511  Sum_probs=197.8

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (416)
                      +++|+||+++|+|||||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus       183 l~~p~rP~vaIlGGaKvsdKi~vl~~ll~~~D~iligG~ma~tFl~a~G~~ig~sl~e~~~~~~a~~il~~a~~~~~~i~  262 (645)
T PRK13962        183 LANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEEDKLDLAKELLAKAEEKGVKLL  262 (645)
T ss_pred             HcCCCCceEEEEcCccHHhHHHHHHHHHHhCCEEEECcHHHHHHHHHcCCCCChhhcChhhHHHHHHHHHHHHhcCCEEE
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (416)
Q Consensus        82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (416)
                      ||+|++|++++ .+.+..+++.++||++||++||||+|++.|++++..|+||+||||||+||+++|+.||++|+++++..
T Consensus       263 lPvD~~~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akti~wNGP~GvfE~~~F~~GT~~l~~aia~~  342 (645)
T PRK13962        263 LPVDSVVAKEFKNDAEHKVVPSDAIPEDWMGLDIGPETIELFAKKIADAKTIVWNGPMGVFEFDNFAEGTRAVAEAVAES  342 (645)
T ss_pred             CCcEEEeecccCCCCceEEEecccCCCCCEEEeeCHHHHHHHHHHHhhCCEEEEECCCccccCCCchHHHHHHHHHHHhc
Confidence            99999999876 33444566789999999999999999999999999999999999999999999999999999999862


Q ss_pred             hcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccccC---cc-ccccccc
Q 014919          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAF---PF-DIDWSAA  225 (416)
Q Consensus       161 ~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~~~---p~-~~~~~~~  225 (416)
                         + .+||+|||+   ++..+|+.++++|+||  ||||+|+||+|+.+|++++|.+.-   |. ..+|+..
T Consensus       343 ---~-~~svvGGGdt~aa~~~~g~~~~~shvST--GGGA~Le~LeGk~LPgv~aL~~s~Mrk~~i~gNWKMn  408 (645)
T PRK13962        343 ---G-AITIIGGGDSAAAVEKLGFADKMSHIST--GGGASLEFLEGKVLPGIACLLDKNPRKPIIAGNWKMN  408 (645)
T ss_pred             ---C-CeEEECchHHHHHHHHcCCccCceEEcC--ChHHHHHHHcCCccHHHHHHhhcCCCCcEEEEECCcC
Confidence               3 489999986   3456788889999999  899999999999999999986542   22 3468654

>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2

Probab=100.00  E-value=9.3e-58  Score=455.46  Aligned_cols=197  Identities=28%  Similarity=0.531  Sum_probs=175.6

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (416)
                      +++|+||+++|+|||||||||++|+||+++||+|++||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus       184 ~~~~~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFl~A~G~~iG~s~~e~~~i~~a~~ll~~~~~~g~~i~  263 (384)
T PF00162_consen  184 LENPKRPFVAILGGAKVSDKIGVLENLLDKVDKLIIGGGMANTFLKAQGYEIGKSLVEEDLIEEAKELLEKAKDRGVKIV  263 (384)
T ss_dssp             HHS-SSSEEEEEESS-HHHHHHHHHHHTTTSSEEEEETTHHHHHHHHTTHBBTTSSCHGGGHHHHHHHHHHHHHTT-EEE
T ss_pred             hcCCCCCeEEEEeCCchHhHHHHHHHHHHHHHHHeeChhHHHHHHHHcCCcccccchhhhhHHHHHHHHHHHHhcCceEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (416)
Q Consensus        82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (416)
                      ||+||+|++++ .+++.++++.++||++||++||||+|++.|++++..|+||+||||||+||+++|+.||++|+++++++
T Consensus       264 lPvD~~v~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktv~wNGP~GvfE~~~F~~GT~~l~~aia~~  343 (384)
T PF00162_consen  264 LPVDFVVADEFSDGARVEVVPADEIPDGWMILDIGPKTIELFSEIIKKAKTVFWNGPMGVFEIENFAEGTRALAKAIAKS  343 (384)
T ss_dssp             --SEEEEESSSSTTSCEEEEETTGBCTTSEEEEE-HHHHHHHHHHHHT-SEEEEES-SS-TTSGGGCHHHHHHHHHHHHH
T ss_pred             EEEEEeehhcccCCCCcEeccccccCCCCeeeccCHHHHHHHHHHHhCCCeEEEECCcccCchhhhhHHHHHHHHHHHhc
Confidence            99999999986 44556677889999999999999999999999999999999999999999999999999999999986


Q ss_pred             hcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeeccc
Q 014919          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGR  204 (416)
Q Consensus       161 ~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr  204 (416)
                         + ++||+||++   ++..+|+.++++|+||  ||||+|+||+|+
T Consensus       344 ---~-a~sivGGGdt~~a~~~~g~~~~~shvST--GGGA~L~~LeGk  384 (384)
T PF00162_consen  344 ---G-AFSIVGGGDTAAAIKKFGLADKFSHVST--GGGAFLEFLEGK  384 (384)
T ss_dssp             ---T-SEEEEESHHHHHHHHHTTGGGGSSEEES--SSHHHHHHHTTS
T ss_pred             ---C-CeEEEcccHHHHHHHhcCcccceeEEec--CcHHHHHHhcCC
Confidence               2 589999886   3446788889999999  899999999986

7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=100.00  E-value=3.8e-39  Score=302.36  Aligned_cols=206  Identities=26%  Similarity=0.370  Sum_probs=170.0

Q ss_pred             eeecccCCCCc-ccccccCcc--------ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHH
Q 014919          199 EFLKGRMLPGV-SALDRAFPF--------DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTH  265 (416)
Q Consensus       199 e~l~gr~lPg~-~aL~~~~p~--------~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~  265 (416)
                      ..++++..+++ ..+.+.+|.        ..+|.+.|+++..+++||||||.|.+++.+|+++|+.+|+|||+    +.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~   87 (227)
T COG0220           8 VRRRLRLTKAQKNALEDNWPRLGLDPQEEPGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAK   87 (227)
T ss_pred             hhhhccccHHHHHHHHhcccccCCChhhccchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHH
Confidence            34455566665 445554431        35688899986568999999999999999999999999999994    678


Q ss_pred             HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          266 CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       266 a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      |++++.+.+++|+++++.||..+++.++  +++++|.|+++|||||||++|+|||++++.|++.++++|+|||.|+++||
T Consensus        88 ~l~k~~~~~l~Nlri~~~DA~~~l~~~~--~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD  165 (227)
T COG0220          88 ALKKIKELGLKNLRLLCGDAVEVLDYLI--PDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD  165 (227)
T ss_pred             HHHHHHHcCCCcEEEEcCCHHHHHHhcC--CCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence            8999999999999999999999987665  46799999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhCCCCceeeeccccccccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014919          346 IEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS  413 (416)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~k~~  413 (416)
                      +++|+++|.....++..+....+.+     .+.  |.+....++.|+||+++.++|++|+++.+++..
T Consensus       166 ~~~y~e~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~T~yE~k~~~~g~~i~~l~~~~~~  226 (227)
T COG0220         166 NEEYFEWMMLEVLEHPPFLKFESED-----LHY--NLPPPDNNPVTEYEQKFRRLGHPVYDLEFIKKK  226 (227)
T ss_pred             CHHHHHHHHHHHHhcchhhhccccc-----ccc--ccccccCCCCcHHHHHHHhCCCceEEEEEEecC
Confidence            9999999665555554443333333     121  233445689999999999999999999999875

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=100.00  E-value=2.6e-38  Score=291.87  Aligned_cols=184  Identities=26%  Similarity=0.527  Sum_probs=149.6

Q ss_pred             ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhc
Q 014919          219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVA  294 (416)
Q Consensus       219 ~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~  294 (416)
                      +.+|.+.|++ +.+++||||||.|.+++.+|+++|+.+|+|+|+    +.++.+++...+++|++++++|+..+++..+ 
T Consensus         7 ~~~~~~~f~~-~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~-   84 (195)
T PF02390_consen    7 PLDWQEIFGN-DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF-   84 (195)
T ss_dssp             TTCHHHHHTS-CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS-
T ss_pred             ccCHHHHcCC-CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc-
Confidence            5689999987 578999999999999999999999999999995    5667778888899999999999999877777 


Q ss_pred             cCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhC-CCCceeeeccccc
Q 014919          295 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY-GKGKLVLVQDECD  373 (416)
Q Consensus       295 ~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~-~~~~~~~~~d~~~  373 (416)
                       +++++|.|+++|||||+|++|+|||++++.|++.++++|+|||.|+++||+.+|+++|++.+.++ +.+......+.  
T Consensus        85 -~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~~~~~~--  161 (195)
T PF02390_consen   85 -PPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENIEESDD--  161 (195)
T ss_dssp             -TTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE-TESS--
T ss_pred             -cCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEcccCcc--
Confidence             57999999999999999999999999999999999999999999999999999999999999994 54432211110  


Q ss_pred             cccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeC
Q 014919          374 TKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP  412 (416)
Q Consensus       374 ~~~~~~~~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~k~  412 (416)
                        .+++   +.++..+.|+||++|+++|++||+++|+|.
T Consensus       162 --~~~~---~~~~~~~~T~yE~k~~~~G~~i~~~~f~k~  195 (195)
T PF02390_consen  162 --LHES---PFDDDYIPTKYERKWLAEGKPIYRLIFKKV  195 (195)
T ss_dssp             --GGCS---CCCTTCCSSHHHHHHHHTTSS-EEEEEEE-
T ss_pred             --cccC---CCCCCCCCCHHHHHHHHCCCCCEEEEEEEC
Confidence              1111   122368999999999999999999999984

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=100.00  E-value=3.4e-32  Score=251.23  Aligned_cols=184  Identities=22%  Similarity=0.361  Sum_probs=151.4

Q ss_pred             cccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhh
Q 014919          218 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIV  293 (416)
Q Consensus       218 ~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~  293 (416)
                      ++..|...|++ +.+++||||||+|.++..+|+++|+.+|+|+|++.    .|.+++...+++|++++++|+.++++..+
T Consensus         5 ~~~~~~~~f~~-~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~   83 (194)
T TIGR00091         5 DKPDFATVFGN-KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF   83 (194)
T ss_pred             cCCCHHHHhCC-CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC
Confidence            34678888886 57899999999999999999999999999999644    45555666788899999999988754434


Q ss_pred             ccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce-eeecccc
Q 014919          294 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL-VLVQDEC  372 (416)
Q Consensus       294 ~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~-~~~~d~~  372 (416)
                        +++++|.|+++|||||++.+|+|+|++++.++++++++|||||.|++.||+..|++++++.+.+++.+.. ..+.+  
T Consensus        84 --~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~~~~~--  159 (194)
T TIGR00091        84 --PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTSKSTD--  159 (194)
T ss_pred             --CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEecccccc--
Confidence              3579999999999999999999999999999999999999999999999999999999999999873321 11111  


Q ss_pred             ccccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeC
Q 014919          373 DTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP  412 (416)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~k~  412 (416)
                         ....   +....+++|+||+||+++|++||+++|+|+
T Consensus       160 ---~~~~---~~~~~~~~T~~E~~~~~~g~~i~~~~~~~~  193 (194)
T TIGR00091       160 ---LNNS---PLSRPRNMTEYEQRFERLGHPVFDLCFERL  193 (194)
T ss_pred             ---cCCC---cccccCcCCHHHHHHHHCCCCeEEEEEEEC
Confidence               1110   011224579999999999999999999986

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.97  E-value=8.8e-31  Score=261.99  Aligned_cols=170  Identities=19%  Similarity=0.313  Sum_probs=146.3

Q ss_pred             ccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCce
Q 014919          225 AYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL  300 (416)
Q Consensus       225 ~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~  300 (416)
                      .|...+++++||||||+|.++..+|+++|+.+|+|+|+    +..|.+++..++++|++++++|+..++ ..+  +++++
T Consensus       117 ~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll-~~~--~~~s~  193 (390)
T PRK14121        117 FISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL-ELL--PSNSV  193 (390)
T ss_pred             HhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh-hhC--CCCce
Confidence            34334678999999999999999999999999999996    556677777789999999999998874 334  58999


Q ss_pred             eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeeccccccccCCCC
Q 014919          301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGG  380 (416)
Q Consensus       301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  380 (416)
                      |.|+++|||||+|++|  ||++++.++++++|+|+|||.++++||+.+|+++|++.+.+.+.+....             
T Consensus       194 D~I~lnFPdPW~KkrH--RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~-------------  258 (390)
T PRK14121        194 EKIFVHFPVPWDKKPH--RRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEI-------------  258 (390)
T ss_pred             eEEEEeCCCCccccch--hhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeec-------------
Confidence            9999999999999988  7999999999999999999999999999999999999998875442111             


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014919          381 WLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS  413 (416)
Q Consensus       381 ~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~k~~  413 (416)
                       ...++..+.|+||++|+++|++||+++|++..
T Consensus       259 -~~~~~~~i~TkyE~r~~~~G~~Iy~l~~~~~~  290 (390)
T PRK14121        259 -KKNAQLEVSSKYEDRWKKQNKDIYDLRIYNLE  290 (390)
T ss_pred             -ccCCCCCCCCHHHHHHHHCCCCEEEEEEEeCC
Confidence             11235588999999999999999999999864

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.97  E-value=1.7e-30  Score=271.58  Aligned_cols=257  Identities=16%  Similarity=0.222  Sum_probs=183.8

Q ss_pred             ccccChhhHHHHHHHhccCCeEEEeccce--EEEeCCCCchHHHHHHHHHhhhcCCCCeEEEcchhHHHHhcccCCc---
Q 014919          111 PVDIGPRSVEEITSTITKCKKVIWVGPVK--FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSI---  185 (416)
Q Consensus       111 ~~DiGp~T~~~~~~~~~~a~~i~wnGp~G--~~e~~~f~~GT~~l~~~~a~~~~~~~~~~v~gg~~~~~~~~~~~~~---  185 (416)
                      .++.|+...+.|...+..+.+++  -|-|  ++|.. + .....+.+.+..   .+  +..+.-  ...+.|. +.+   
T Consensus       237 AL~gg~dGl~~~~~il~~a~~~L--~~gG~l~lEig-~-~q~~~v~~~~~~---~g--~~~~~~--~~D~~g~-~R~v~~  304 (506)
T PRK01544        237 ALFAEEDGLQAYFIIAENAKQFL--KPNGKIILEIG-F-KQEEAVTQIFLD---HG--YNIESV--YKDLQGH-SRVILI  304 (506)
T ss_pred             HhcCCccHHHHHHHHHHHHHHhc--cCCCEEEEEEC-C-chHHHHHHHHHh---cC--CCceEE--EecCCCC-ceEEEe
Confidence            46778888888888888877654  4444  55654 3 233344333322   11  111100  0111121 111   


Q ss_pred             cceeeecCCceEeeeeccc-CCCCcccc-cccCc-cccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEch
Q 014919          186 FGLNMVESGSAVWEFLKGR-MLPGVSAL-DRAFP-FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL  262 (416)
Q Consensus       186 ~~~st~~GGGa~le~l~gr-~lPg~~aL-~~~~p-~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~  262 (416)
                      +.+..    +-++...+|+ ..+.++++ ...+| +.+.+...|+. +.+++||||||+|.++..+|+++|+.+|+|+|+
T Consensus       305 ~~~~~----~rs~~rr~g~~~~~~q~~~~e~~~p~~~i~~eklf~~-~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~  379 (506)
T PRK01544        305 SPINL----NRSYARRIGKSLSGVQQNLLDNELPKYLFSKEKLVNE-KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEV  379 (506)
T ss_pred             ccccC----CcceeccCCCCCCHHHHHHHHhhhhhhCCCHHHhCCC-CCceEEEECCCchHHHHHHHHhCCCCCEEEEEe
Confidence            11111    2245555664 44555554 44455 34566667765 689999999999999999999999999999995


Q ss_pred             ----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCc
Q 014919          263 ----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG  338 (416)
Q Consensus       263 ----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG  338 (416)
                          +.++++++.+.+++|+++++.|+..+ ...|  +++++|.|+++|||||||++|+|||++++.|++.++++|||||
T Consensus       380 ~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~-~~~~--~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG  456 (506)
T PRK01544        380 YLNGVANVLKLAGEQNITNFLLFPNNLDLI-LNDL--PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNG  456 (506)
T ss_pred             eHHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHhc--CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCC
Confidence                56677777788999999999998766 4556  5889999999999999999999999999999999999999999


Q ss_pred             EEEEEeCcHHHHHHHHHHHHhCCCCceeeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 014919          339 KVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHV  397 (416)
Q Consensus       339 ~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~T~~E~k~  397 (416)
                      .++++||+.+|+++|++.+.+++.+.. ...         ..|+..++.++.|+||+|+
T Consensus       457 ~i~~~TD~~~y~~~~~~~~~~~~~f~~-~~~---------~~~~~~~~~~~~T~yE~k~  505 (506)
T PRK01544        457 NLVFASDIENYFYEAIELIQQNGNFEI-INK---------NDYLKPHDNYVITKYHQKA  505 (506)
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCeEe-ccc---------ccccCCCCCCCCchhccCc
Confidence            999999999999999999999874421 111         1233345678999999986

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.92  E-value=5.1e-24  Score=197.95  Aligned_cols=169  Identities=22%  Similarity=0.391  Sum_probs=142.7

Q ss_pred             ccccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcCh-hhhhhh
Q 014919          217 PFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNA-TSTFRS  291 (416)
Q Consensus       217 p~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da-~~l~~~  291 (416)
                      +....|.+.|+. ++..|||||||+|.++..+|+..|..+++|+|++..++    +++...+++|+.++++|+ ..+ +.
T Consensus        28 ~~~~~~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l-~~  105 (202)
T PRK00121         28 PAPLDWAELFGN-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL-LD  105 (202)
T ss_pred             CCCCCHHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH-HH
Confidence            356789999987 68999999999999999999999999999999765544    444455778999999999 554 33


Q ss_pred             hhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeeccc
Q 014919          292 IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDE  371 (416)
Q Consensus       292 ~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~  371 (416)
                      .+  ++++||.|+++||+||.+..|++++...+.++++++++|||||.|++.+++..+..++++.++++++...  +.  
T Consensus       106 ~~--~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~--~~--  179 (202)
T PRK00121        106 MF--PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV--SE--  179 (202)
T ss_pred             Hc--CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc--cc--
Confidence            33  4788999999999999988888888888899999999999999999999999999999999999997532  11  


Q ss_pred             cccccCCCCCCCCCCCCCCCHHHHHHHH
Q 014919          372 CDTKTNQGGWLGENSFGVRSDWEQHVID  399 (416)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~T~~E~k~~~  399 (416)
                            ...|..+++..+.|+||++|+.
T Consensus       180 ------~~~~~~~~~~~~~~~~~~~~~~  201 (202)
T PRK00121        180 ------AGDYVPRPEGRPMTEYERKGLR  201 (202)
T ss_pred             ------chhhcccCccCCCcHHHHHhhc
Confidence                  2356778899999999999975

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=99.76  E-value=1.6e-18  Score=156.12  Aligned_cols=189  Identities=22%  Similarity=0.361  Sum_probs=143.5

Q ss_pred             ccccccccccCCC-----CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHH-------HhCCCcEEE
Q 014919          217 PFDIDWSAAYHDP-----AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQ-------LSGITNGYF  280 (416)
Q Consensus       217 p~~~~~~~~f~~~-----~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~-------~~~l~nv~f  280 (416)
                      |...+|...|+.-     ....+.|||||.|.+++.|+..+|+..++|+|+    +....++++       ...++|+.+
T Consensus        42 P~~mDWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~v  121 (249)
T KOG3115|consen   42 PQEMDWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISV  121 (249)
T ss_pred             hHhCcHHHhhhhhhhhccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccccccee
Confidence            4456787776542     236799999999999999999999999999996    222222222       123789999


Q ss_pred             EEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhC
Q 014919          281 IATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  360 (416)
Q Consensus       281 ~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~  360 (416)
                      ++.++...++++|  ..+.++-.++.||||++|.+.+|+|++...++.++.-+|++||.++..||+.++.+||...|+++
T Consensus       122 lr~namk~lpn~f--~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~h  199 (249)
T KOG3115|consen  122 LRTNAMKFLPNFF--EKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEH  199 (249)
T ss_pred             eeccchhhccchh--hhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhC
Confidence            9999999888888  67889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeccccccccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCCC
Q 014919          361 GKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSC  414 (416)
Q Consensus       361 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~k~~~  414 (416)
                      +.+.. .++..    +.+.+  ......-.|+.-++....|-..+.-+|+++..
T Consensus       200 plfe~-lt~ee----~~~d~--~v~~~~~~teeg~kv~r~~g~~f~a~f~r~~~  246 (249)
T KOG3115|consen  200 PLFER-LTEEE----EENDP--CVELLSNATEEGKKVARNGGKKFVAVFRRIPN  246 (249)
T ss_pred             cHhhh-cchhh----hcCCc--chhhhhhhhhhcccccccCCceeeeeeeeccC
Confidence            98742 22110    11100  00011223555556666666777777887754

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.60  E-value=4.5e-15  Score=140.21  Aligned_cols=101  Identities=18%  Similarity=0.264  Sum_probs=84.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..|||||||||.+++.+++..+..+++|+|++.    .|++++.+.+..|++|+++||+++     |+++++||.+++
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L-----Pf~D~sFD~vt~  125 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL-----PFPDNSFDAVTI  125 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC-----CCCCCccCEEEe
Confidence            37899999999999999999999999999999654    455555556677899999999998     668999999999


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .|.--+..+.        +..|+|++|+|||||++.+.
T Consensus       126 ~fglrnv~d~--------~~aL~E~~RVlKpgG~~~vl  155 (238)
T COG2226         126 SFGLRNVTDI--------DKALKEMYRVLKPGGRLLVL  155 (238)
T ss_pred             eehhhcCCCH--------HHHHHHHHHhhcCCeEEEEE
Confidence            8765443221        58999999999999987763

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.49  E-value=9.7e-14  Score=131.72  Aligned_cols=101  Identities=17%  Similarity=0.265  Sum_probs=69.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..|||+|||||..+..++++. |+.+++|+|++..    |.+++...+..|++++++|++++     |+++++||.|+
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l-----p~~d~sfD~v~  121 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL-----PFPDNSFDAVT  121 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB-------S-TT-EEEEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh-----cCCCCceeEEE
Confidence            46799999999999999999874 6789999997554    45555556677999999999998     55789999999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +.|.-....+        .+..+++++|+|||||++.+.
T Consensus       122 ~~fglrn~~d--------~~~~l~E~~RVLkPGG~l~il  152 (233)
T PF01209_consen  122 CSFGLRNFPD--------RERALREMYRVLKPGGRLVIL  152 (233)
T ss_dssp             EES-GGG-SS--------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHhhHHhhCC--------HHHHHHHHHHHcCCCeEEEEe
Confidence            8874322111        147899999999999998864

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.48  E-value=1.2e-13  Score=110.73  Aligned_cols=94  Identities=14%  Similarity=0.200  Sum_probs=74.4

Q ss_pred             EEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC-CCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCC
Q 014919          235 VDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFN  313 (416)
Q Consensus       235 LDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k  313 (416)
                      ||||||+|.++..++++ +..+++|+|.+..+++.+++.. ..++.+.++|+.++     |+++++||.|+++..-.|. 
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l-----~~~~~sfD~v~~~~~~~~~-   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL-----PFPDNSFDVVFSNSVLHHL-   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS-----SS-TT-EEEEEEESHGGGS-
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhC-----ccccccccccccccceeec-
Confidence            89999999999999998 8899999999888888776644 34688999999887     5578999999988554443 


Q ss_pred             CcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          314 RPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       314 ~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                       .      -...+++++.|+|||||.++|
T Consensus        74 -~------~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   74 -E------DPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             -S------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             -c------CHHHHHHHHHHHcCcCeEEeC
Confidence             1      124899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.45  E-value=1.2e-12  Score=120.16  Aligned_cols=115  Identities=19%  Similarity=0.185  Sum_probs=91.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||||||+|..++.+|++.|+.+++|+|.+.    .|.++++..+++|++++++|+.++     +. .++||.|+++
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~-----~~-~~~fDlV~~~  119 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF-----GQ-EEKFDVVTSR  119 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC-----CC-CCCccEEEEc
Confidence            6889999999999999999999999999999754    455556667888899999999876     32 5689999986


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~  364 (416)
                      .-.+            .+.+++.+++.|+|||.+++.. ...+...+.+..+++|+..
T Consensus       120 ~~~~------------~~~~l~~~~~~LkpGG~lv~~~-~~~~~~~l~~~~~~~~~~~  164 (187)
T PRK00107        120 AVAS------------LSDLVELCLPLLKPGGRFLALK-GRDPEEEIAELPKALGGKV  164 (187)
T ss_pred             cccC------------HHHHHHHHHHhcCCCeEEEEEe-CCChHHHHHHHHHhcCceE
Confidence            3111            1489999999999999999863 3445666666677778764

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.45  E-value=4e-13  Score=111.98  Aligned_cols=104  Identities=19%  Similarity=0.288  Sum_probs=76.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhC-CCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      +.+|||||||+|.++..+++++|..+++|+|+++.    |++++.+.+ .+|++|+++|+ ....   . ..+.||.|++
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~---~-~~~~~D~v~~   76 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP---D-FLEPFDLVIC   76 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT---T-TSSCEEEEEE
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc---c-cCCCCCEEEE
Confidence            57899999999999999999899999999997554    444443333 47899999999 3211   1 2467999998


Q ss_pred             EC-CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          306 QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       306 ~f-pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .. ...+. ..+.    ...++++.+.+.|+|||++++.+
T Consensus        77 ~~~~~~~~-~~~~----~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   77 SGFTLHFL-LPLD----ERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             CSGSGGGC-CHHH----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCccccc-cchh----HHHHHHHHHHHhcCCCcEEEEEE
Confidence            75 21111 1111    12478999999999999999864

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.45  E-value=7.1e-13  Score=128.00  Aligned_cols=101  Identities=14%  Similarity=0.105  Sum_probs=80.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHHh-------CCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLS-------GITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~~-------~l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      .+.+|||||||+|.++..++++. |+.+++|+|++..+++.+++.       ..+|++++++|+.++     |+++++||
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-----p~~~~sfD  147 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-----PFDDCYFD  147 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-----CCCCCCEe
Confidence            36789999999999999999874 678999999877766655422       246899999999887     55688999


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .|++++.-.+..++        ..++++++|+|||||++.+.
T Consensus       148 ~V~~~~~l~~~~d~--------~~~l~ei~rvLkpGG~l~i~  181 (261)
T PLN02233        148 AITMGYGLRNVVDR--------LKAMQEMYRVLKPGSRVSIL  181 (261)
T ss_pred             EEEEecccccCCCH--------HHHHHHHHHHcCcCcEEEEE
Confidence            99987654443221        48899999999999999885

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.44  E-value=1.4e-12  Score=115.45  Aligned_cols=105  Identities=15%  Similarity=0.262  Sum_probs=80.4

Q ss_pred             CCCeEEEEeccccHHHHHHH-HhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMA-RKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA-~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ++.+|||+|||+|.++..++ +.+|..+++|+|++..++    +++++.+++|++|+++|+.++ +..+  . +.||.|+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l-~~~~--~-~~~D~I~   78 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDL-PQEL--E-EKFDIII   78 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCG-CGCS--S-TTEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcc-cccc--C-CCeeEEE
Confidence            46899999999999999999 568899999999765544    444557888999999999985 3212  2 7899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      ++.+..|...        ...+++.+.+.|+++|.+++..-.
T Consensus        79 ~~~~l~~~~~--------~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   79 SNGVLHHFPD--------PEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EESTGGGTSH--------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EcCchhhccC--------HHHHHHHHHHHcCCCcEEEEEECC
Confidence            8844322211        137899999999999999986543

...

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.43  E-value=2.1e-12  Score=124.17  Aligned_cols=98  Identities=14%  Similarity=0.015  Sum_probs=82.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+.+|||||||+|.++..+++++|+.+++|+|++..+++.+++.   +++++++|+.++     + ++++||.|++++.-
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~-----~-~~~~fD~v~~~~~l   99 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---GVDARTGDVRDW-----K-PKPDTDVVVSNAAL   99 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---CCcEEEcChhhC-----C-CCCCceEEEEehhh
Confidence            46899999999999999999999999999999988888877553   688999998765     1 35789999998776


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .|..+.        ..++++++++|||||.+.+..
T Consensus       100 ~~~~d~--------~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103        100 QWVPEH--------ADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             hhCCCH--------HHHHHHHHHhCCCCcEEEEEc
Confidence            665321        378999999999999999864

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.36  E-value=3.9e-12  Score=122.24  Aligned_cols=100  Identities=17%  Similarity=0.168  Sum_probs=84.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+.+|||||||+|.++..+++++|+.+++|+|++..+++.+++. .+|+.|+.+|+..+.      ++++||.|++++..
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~-~~~~~~~~~d~~~~~------~~~~fD~v~~~~~l  103 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR-LPDCQFVEADIASWQ------PPQALDLIFANASL  103 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh-CCCCeEEECchhccC------CCCCccEEEEccCh
Confidence            46899999999999999999999999999999988888776543 578999999987651      35689999998777


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .|.++.        ..++++++++|||||.+.+.+
T Consensus       104 ~~~~d~--------~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683        104 QWLPDH--------LELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             hhCCCH--------HHHHHHHHHhcCCCcEEEEEC
Confidence            775432        378999999999999999875

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.36  E-value=1.7e-11  Score=112.21  Aligned_cols=118  Identities=19%  Similarity=0.201  Sum_probs=89.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.+++.+++++|+.+++|+|++..++    ++++..++.+++++++|+...    +   ++++|.|++
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~----~---~~~~D~v~~  103 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE----L---PGKADAIFI  103 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh----c---CcCCCEEEE
Confidence            36789999999999999999999999999999765544    444455677899999987432    1   467999988


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      .....     +      .+.+++.+.+.|+|||++++..-...-..+..+.++++++...
T Consensus       104 ~~~~~-----~------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~  152 (187)
T PRK08287        104 GGSGG-----N------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSEL  152 (187)
T ss_pred             CCCcc-----C------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcc
Confidence            64321     1      1478899999999999998864233445667788888887543

>PLN02244 tocopherol O-methyltransferase

Probab=99.35  E-value=5.8e-12  Score=126.20  Aligned_cols=101  Identities=20%  Similarity=0.238  Sum_probs=79.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..|++++ +.+++|+|++..+++    +++..++ ++++|+++|+.++     |+++++||.|+
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-----~~~~~~FD~V~  191 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-----PFEDGQFDLVW  191 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-----CCCCCCccEEE
Confidence            46789999999999999999987 789999997655443    4444565 4799999999876     44688999998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +.....+..+.        ..++++++|+|||||.|++.+
T Consensus       192 s~~~~~h~~d~--------~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        192 SMESGEHMPDK--------RKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             ECCchhccCCH--------HHHHHHHHHHcCCCcEEEEEE
Confidence            87544332221        378999999999999999864

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.35  E-value=8.1e-12  Score=112.92  Aligned_cols=106  Identities=19%  Similarity=0.339  Sum_probs=80.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ...+||+|||+|..++.++++.|+.+++++|++..|.+    +++.+++++++++++|..+.    +  .+++||.|++|
T Consensus        32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~----~--~~~~fD~Iv~N  105 (170)
T PF05175_consen   32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA----L--PDGKFDLIVSN  105 (170)
T ss_dssp             TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT----C--CTTCEEEEEE-
T ss_pred             CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc----c--cccceeEEEEc
Confidence            67899999999999999999999989999997655544    45567788899999998654    1  36899999998


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                        .|++...+.. ..+..++++...+.|+|||.+++...
T Consensus       106 --PP~~~~~~~~-~~~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen  106 --PPFHAGGDDG-LDLLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             ----SBTTSHCH-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --cchhcccccc-hhhHHHHHHHHHHhccCCCEEEEEee
Confidence              3443332211 12346899999999999999977643

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.34  E-value=8.8e-12  Score=117.65  Aligned_cols=102  Identities=15%  Similarity=0.180  Sum_probs=79.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+|||+|.++..+++.. |..+++|+|++..+.    +++...+++|+.++++|+..+     +++++++|.|+
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V~  119 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-----PFDDNSFDYVT  119 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-----CCCCCCccEEE
Confidence            36799999999999999999885 678999999765544    344445677899999999875     33568999999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +.+.-.|....        ..+++++.++|+|||.+++..
T Consensus       120 ~~~~l~~~~~~--------~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       120 IGFGLRNVPDY--------MQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             EecccccCCCH--------HHHHHHHHHHcCcCeEEEEEE
Confidence            87654443221        378999999999999998764

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.34  E-value=9.9e-12  Score=116.94  Aligned_cols=102  Identities=15%  Similarity=0.174  Sum_probs=83.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      ..+|||||||+|.++..+++..|..+++|+|++..+.+.++....+|+.++.+|+.+.     ++++++||.|++++.-.
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~vi~~~~l~  109 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKL-----PLEDSSFDLIVSNLALQ  109 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhC-----CCCCCceeEEEEhhhhh
Confidence            4689999999999999999999999999999988777666554446899999999876     33578899999887666


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      |..+.        ..+++++.++|+|||.+++.+.
T Consensus       110 ~~~~~--------~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072       110 WCDDL--------SQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             hccCH--------HHHHHHHHHHcCCCcEEEEEeC
Confidence            54322        3789999999999999998753

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.34  E-value=6e-12  Score=122.20  Aligned_cols=107  Identities=14%  Similarity=0.207  Sum_probs=85.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC---CeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKD---LNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~---~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ...+|||||||+|.++..+++..|.   .+++|+|++..+++.+.+. .+|+.|+++|+.++     |+++++||.|+..
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-~~~~~~~~~d~~~l-----p~~~~sfD~I~~~  158 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-YPQVTFCVASSHRL-----PFADQSLDAIIRI  158 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-CCCCeEEEeecccC-----CCcCCceeEEEEe
Confidence            3578999999999999999988774   3799999999888877543 46899999998876     4468899999877


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHH
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF  357 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~  357 (416)
                      +. |              .++++++|+|||||.|++.+....+..++.+.+
T Consensus       159 ~~-~--------------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~  194 (272)
T PRK11088        159 YA-P--------------CKAEELARVVKPGGIVITVTPGPRHLFELKGLI  194 (272)
T ss_pred             cC-C--------------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence            53 2              345789999999999999887666555555443

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.33  E-value=5.1e-12  Score=121.02  Aligned_cols=131  Identities=14%  Similarity=0.170  Sum_probs=90.7

Q ss_pred             EeeeecccCCCCcccccccCccccccccccCCCCCCeEEEEeccccHHHHHHHH--hCCCCeEEEEchHHHHHHHH----
Q 014919          197 VWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMAR--KRKDLNFLGLELVTHCRDSL----  270 (416)
Q Consensus       197 ~le~l~gr~lPg~~aL~~~~p~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~--~~p~~~~iGvD~~~~a~~~a----  270 (416)
                      .++-+..+..|+++.+.....   .+...+.. ++.+|||||||+|..+..+++  .+|+.+++|+|.+..+++.+    
T Consensus        27 ~yd~~~~~~~p~y~~~~~~~~---~~~~~~~~-~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~  102 (247)
T PRK15451         27 VFPDMIQRSVPGYSNIISMIG---MLAERFVQ-PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHI  102 (247)
T ss_pred             hhhhHHHhcCCChHHHHHHHH---HHHHHhCC-CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHH
Confidence            466666778888866543321   12222222 368899999999999999998  46899999999766555544    


Q ss_pred             HHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          271 QLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       271 ~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ...+.. +++++++|+.++     +  ...+|.|++++...+.... .     ...++++++++|||||.|++..
T Consensus       103 ~~~~~~~~v~~~~~d~~~~-----~--~~~~D~vv~~~~l~~l~~~-~-----~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        103 DAYKAPTPVDVIEGDIRDI-----A--IENASMVVLNFTLQFLEPS-E-----RQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             HhcCCCCCeEEEeCChhhC-----C--CCCCCEEehhhHHHhCCHH-H-----HHHHHHHHHHhcCCCCEEEEEE
Confidence            334443 799999998876     2  2357888876544332111 1     1478999999999999999863

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.33  E-value=1.9e-11  Score=111.73  Aligned_cols=110  Identities=19%  Similarity=0.189  Sum_probs=82.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.++||||||+|.++..+|...|+.+++|+|.+..    +.+++++.+++|++++++|+.++     + ..++||.|+++
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~-----~-~~~~fD~I~s~  116 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF-----Q-HEEQFDVITSR  116 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc-----c-ccCCccEEEeh
Confidence            67999999999999999999999999999997654    34445566788999999999875     1 25789999876


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHh
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE  359 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~  359 (416)
                      .   +    ++     .+.+++.+.++|+|||.+++.... ..........++
T Consensus       117 ~---~----~~-----~~~~~~~~~~~LkpgG~lvi~~~~-~~~~~~~~~~e~  156 (181)
T TIGR00138       117 A---L----AS-----LNVLLELTLNLLKVGGYFLAYKGK-KYLDEIEEAKRK  156 (181)
T ss_pred             h---h----hC-----HHHHHHHHHHhcCCCCEEEEEcCC-CcHHHHHHHHHh
Confidence            3   2    11     147889999999999999987443 233334444344

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.32  E-value=2.6e-11  Score=110.34  Aligned_cols=124  Identities=18%  Similarity=0.214  Sum_probs=89.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ..+|||+|||+|.++..+++..+  +++|+|++..+.+.    ++.++. +++++++|+.+.       ..++||.|+++
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-------~~~~fD~Vi~n   89 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKG-------VRGKFDVILFN   89 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccc-------cCCcccEEEEC
Confidence            56899999999999999999876  89999986655444    333444 689999997654       24589999987


Q ss_pred             CCCCCCCCcchh---------------hhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919          307 CPNPDFNRPEHR---------------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       307 fpdpw~k~~h~k---------------rRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~  366 (416)
                        .||+......               .+....++++++.++|+|||.+++.+....-..++.+.+++.++....
T Consensus        90 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~  162 (179)
T TIGR00537        90 --PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEI  162 (179)
T ss_pred             --CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEE
Confidence              3443221110               012246899999999999999998764443355678888888876543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.32  E-value=9.6e-12  Score=119.08  Aligned_cols=101  Identities=12%  Similarity=0.081  Sum_probs=81.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      ....|||||||+|.++..+++.  ..+++|+|++..+++.++++. .+..++++|+..+     |+++++||.|+.+++-
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~-~~~~~~~~d~~~~-----~~~~~~fD~V~s~~~l  113 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKD-AADHYLAGDIESL-----PLATATFDLAWSNLAV  113 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhC-CCCCEEEcCcccC-----cCCCCcEEEEEECchh
Confidence            3578999999999999988875  579999999888887776543 3467889999876     3357899999998776


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      .|..+.        ..++.++.++|+|||.+++.+-.
T Consensus       114 ~~~~d~--------~~~l~~~~~~Lk~gG~l~~~~~~  142 (251)
T PRK10258        114 QWCGNL--------STALRELYRVVRPGGVVAFTTLV  142 (251)
T ss_pred             hhcCCH--------HHHHHHHHHHcCCCeEEEEEeCC
Confidence            664332        37899999999999999998633

>TIGR00740 methyltransferase, putative

Probab=99.32  E-value=1.1e-11  Score=117.98  Aligned_cols=101  Identities=12%  Similarity=0.161  Sum_probs=77.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHh--CCCCeEEEEchHHHHHHHHH----HhC-CCcEEEEEcChhhhhhhhhccCCCceeE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQ----LSG-ITNGYFIATNATSTFRSIVASYPGKLIL  302 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~--~p~~~~iGvD~~~~a~~~a~----~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~  302 (416)
                      .+.+|||||||+|.++..++++  +|+++++|+|++..+++.++    ..+ ..+++++++|+..+     +  ...+|.
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~-----~--~~~~d~  125 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-----E--IKNASM  125 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-----C--CCCCCE
Confidence            4678999999999999999987  47899999998665555443    333 24799999999876     2  235788


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      |++++..+|.....      ...++++++++|+|||.+++.
T Consensus       126 v~~~~~l~~~~~~~------~~~~l~~i~~~LkpgG~l~i~  160 (239)
T TIGR00740       126 VILNFTLQFLPPED------RIALLTKIYEGLNPNGVLVLS  160 (239)
T ss_pred             EeeecchhhCCHHH------HHHHHHHHHHhcCCCeEEEEe
Confidence            88887666542211      137899999999999999986

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.31  E-value=5.4e-11  Score=113.33  Aligned_cols=128  Identities=19%  Similarity=0.287  Sum_probs=94.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ...|||+|||+|.++..+++.+|+.+++|+|++..+.    +++...+++|+.++++|+.+.    +  ++++||.|+++
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~--~~~~fD~Vi~n  161 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP----L--PGGKFDLIVSN  161 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc----C--cCCceeEEEEC
Confidence            4689999999999999999999999999999755544    444456778899999998653    2  36789999998


Q ss_pred             CCCCCCCCc--ch----------hhhh--------hhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919          307 CPNPDFNRP--EH----------RWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       307 fpdpw~k~~--h~----------krRl--------~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~  366 (416)
                      .|  +....  +.          +..+        ....+++.+.++|+|||.+++...+. ..+.+.+.+.++++....
T Consensus       162 pP--y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~-~~~~~~~~l~~~gf~~v~  238 (251)
T TIGR03534       162 PP--YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD-QGEAVRALFEAAGFADVE  238 (251)
T ss_pred             CC--CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc-HHHHHHHHHHhCCCCceE
Confidence            43  33211  00          0000        12478899999999999999987653 346677888888876544


Q ss_pred             e
Q 014919          367 L  367 (416)
Q Consensus       367 ~  367 (416)
                      +
T Consensus       239 ~  239 (251)
T TIGR03534       239 T  239 (251)
T ss_pred             E
Confidence            4

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.29  E-value=3.3e-11  Score=101.74  Aligned_cols=98  Identities=18%  Similarity=0.197  Sum_probs=76.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.++||||||+|.++..+++++|+.+++|+|.+..+.+    +++..++++++++.+|+.+.++.    ...++|.|++.
T Consensus        20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~D~v~~~   95 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED----SLPEPDRVFIG   95 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh----hcCCCCEEEEC
Confidence            57999999999999999999999999999997655444    44456678899999998754221    24689999886


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .+...           ..++++.+++.|+|||.|++.
T Consensus        96 ~~~~~-----------~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        96 GSGGL-----------LQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             Ccchh-----------HHHHHHHHHHHcCCCCEEEEE
Confidence            43211           148899999999999999885

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.29  E-value=1e-10  Score=108.02  Aligned_cols=116  Identities=16%  Similarity=0.208  Sum_probs=84.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|||+|.++..+|+..|+.+++|+|.+..+    .+++++.++.|++++.+|+.+.++. +   ...+|.+++
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~-~---~~~~d~v~~  115 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQ-L---APAPDRVCI  115 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhh-C---CCCCCEEEE
Confidence            3679999999999999999988888999999975544    4445556778999999999764322 1   223567766


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCC
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG  361 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~  361 (416)
                      ....+            .+.+++++.++|+|||.+++.+...+......+.+++.+
T Consensus       116 ~~~~~------------~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~  159 (196)
T PRK07402        116 EGGRP------------IKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ  159 (196)
T ss_pred             ECCcC------------HHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence            43222            147899999999999999998765555455556666543

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.29  E-value=1.5e-11  Score=121.89  Aligned_cols=104  Identities=20%  Similarity=0.235  Sum_probs=79.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----hCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      +.+|||||||+|.++..||+.  +.+++|||.+..+++.++.    .+. .++.++++|+.++     ++.+++||.|++
T Consensus       132 g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-----~~~~~~FD~Vi~  204 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-----ADEGRKFDAVLS  204 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-----hhccCCCCEEEE
Confidence            568999999999999999874  6799999987666555442    222 4899999999876     324679999987


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  349 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~  349 (416)
                      ...-.+..+.        ..++++++++|||||.+++.+.+...
T Consensus       205 ~~vLeHv~d~--------~~~L~~l~r~LkPGG~liist~nr~~  240 (322)
T PLN02396        205 LEVIEHVANP--------AEFCKSLSALTIPNGATVLSTINRTM  240 (322)
T ss_pred             hhHHHhcCCH--------HHHHHHHHHHcCCCcEEEEEECCcCH
Confidence            6433322211        48999999999999999998876543

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.29  E-value=3e-11  Score=101.50  Aligned_cols=107  Identities=23%  Similarity=0.307  Sum_probs=79.1

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+|||+|||+|.+++.+++.. ..+++|+|+...+.+.    +...++ .+++++++|+.+.. +.+  .++++|.|++|
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~~~--~~~~~D~Iv~n   77 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP-EPL--PDGKFDLIVTN   77 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH-HTC--TTT-EEEEEE-
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch-hhc--cCceeEEEEEC
Confidence            579999999999999999998 7899999986555444    334455 57999999998873 223  57899999998


Q ss_pred             CCCCCCCCcc--hhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          307 CPNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       307 fpdpw~k~~h--~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                        .||....+  ...+-....|++++.+.|+|||.+.+.+
T Consensus        78 --pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   78 --PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             ---STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence              45543211  1112245699999999999999999865

...

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.29  E-value=5.6e-11  Score=112.66  Aligned_cols=131  Identities=16%  Similarity=0.296  Sum_probs=99.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ..+|||||||+|...+.+|++.++++++|||+.+.+.+    ..+.+++ ++++++++|+.++... +  ...+||.|++
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~-~--~~~~fD~Ii~  121 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA-L--VFASFDLIIC  121 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc-c--cccccCEEEe
Confidence            68999999999999999999988899999997555444    4444455 4799999999998432 2  3457999999


Q ss_pred             ECCCCCCCCcch----hh--------hhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919          306 QCPNPDFNRPEH----RW--------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  367 (416)
Q Consensus       306 ~fpdpw~k~~h~----kr--------Rl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~  367 (416)
                      |  .|+++....    +.        ....+++++...++|||||.+.+....+... +..+.+.+++++....
T Consensus       122 N--PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~-ei~~~l~~~~~~~k~i  192 (248)
T COG4123         122 N--PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLA-EIIELLKSYNLEPKRI  192 (248)
T ss_pred             C--CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHH-HHHHHHHhcCCCceEE
Confidence            8  566543222    11        1225799999999999999999987766544 4678888888875543

>PRK04266 fibrillarin; Provisional

Probab=99.28  E-value=6.3e-11  Score=111.96  Aligned_cols=124  Identities=15%  Similarity=0.135  Sum_probs=90.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+.+|||+|||+|.++..+|+..+...++|+|++..+++.+.+  ...+|+.++.+|+... ...++ .+++||.|+...
T Consensus        72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~-~~~~~-l~~~~D~i~~d~  149 (226)
T PRK04266         72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKP-ERYAH-VVEKVDVIYQDV  149 (226)
T ss_pred             CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCc-chhhh-ccccCCEEEECC
Confidence            4679999999999999999999876789999987755443221  1237899999998752 11112 135699999877


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE-----eCc----HHHHHHHHHHHHhCCCCce
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-----SDI----EEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~-----tD~----~~~~~~~~~~~~~~~~~~~  365 (416)
                      ++||.          ...++++++++|||||.+++.     .|+    ...++...+.+++.||...
T Consensus       150 ~~p~~----------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i  206 (226)
T PRK04266        150 AQPNQ----------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEIL  206 (226)
T ss_pred             CChhH----------HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEE
Confidence            77762          125689999999999999994     333    2344556688888888754

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.27  E-value=1.5e-11  Score=112.70  Aligned_cols=138  Identities=18%  Similarity=0.145  Sum_probs=103.7

Q ss_pred             eeecccCCCCcccccccCccccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcE
Q 014919          199 EFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG  278 (416)
Q Consensus       199 e~l~gr~lPg~~aL~~~~p~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv  278 (416)
                      .|-..|+.|..+.|.. .|.          .....|+|||||+|..+..|++++|+..++|+|.+..+++++ +..+.|+
T Consensus        10 ~F~~eRtRPa~dLla~-Vp~----------~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~A-a~rlp~~   77 (257)
T COG4106          10 QFEDERTRPARDLLAR-VPL----------ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKA-AQRLPDA   77 (257)
T ss_pred             HHHHhccCcHHHHHhh-CCc----------cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHH-HHhCCCC
Confidence            3444566666655532 221          135789999999999999999999999999999988888887 4457899


Q ss_pred             EEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC-c--HHHHHHHHH
Q 014919          279 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-I--EEVMLRMKQ  355 (416)
Q Consensus       279 ~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD-~--~~~~~~~~~  355 (416)
                      +|.++|+.++ .     ++.+.|+++.|-.-.|..+ |       +++|.++...|.|||.|.++.. |  +....-|.+
T Consensus        78 ~f~~aDl~~w-~-----p~~~~dllfaNAvlqWlpd-H-------~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~  143 (257)
T COG4106          78 TFEEADLRTW-K-----PEQPTDLLFANAVLQWLPD-H-------PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRE  143 (257)
T ss_pred             ceecccHhhc-C-----CCCccchhhhhhhhhhccc-c-------HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHH
Confidence            9999999887 2     4678999998877777422 2       4889999999999999999853 2  233455666


Q ss_pred             HHHhCCC
Q 014919          356 QFLEYGK  362 (416)
Q Consensus       356 ~~~~~~~  362 (416)
                      ..++.+|
T Consensus       144 ~A~~~p~  150 (257)
T COG4106         144 TADEAPF  150 (257)
T ss_pred             HHhcCch
Confidence            6655544

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.27  E-value=7.7e-12  Score=102.88  Aligned_cols=94  Identities=18%  Similarity=0.234  Sum_probs=67.6

Q ss_pred             EEEEeccccHHHHHHHHhC---CCCeEEEEchHHHHHHHHHHhC---CCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          234 VVDIGSGNGLFLLGMARKR---KDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       234 vLDIGCG~G~~~~~lA~~~---p~~~~iGvD~~~~a~~~a~~~~---l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      |||+|||+|..+..+++.+   |..+++|+|+++.+++.+++..   -.+++|+++|+.++ +    ...+++|.|++.+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l-~----~~~~~~D~v~~~~   75 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL-P----FSDGKFDLVVCSG   75 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH-H----HHSSSEEEEEE-T
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC-c----ccCCCeeEEEEcC
Confidence            7999999999999999986   5689999999887777665432   12899999999987 2    2467999999853


Q ss_pred             C-CCCCCCcchhhhhhhHHHHHHHHhhccCCc
Q 014919          308 P-NPDFNRPEHRWRMVQRSLVEAVSDLLVHDG  338 (416)
Q Consensus       308 p-dpw~k~~h~krRl~~~~~l~~i~r~LkpgG  338 (416)
                      . -.+..      +-....+++++.++|+|||
T Consensus        76 ~~~~~~~------~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   76 LSLHHLS------PEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             TGGGGSS------HHHHHHHHHHHHHTEEEEE
T ss_pred             CccCCCC------HHHHHHHHHHHHHHhCCCC
Confidence            2 12111      1123589999999999998

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.27  E-value=1e-10  Score=114.27  Aligned_cols=125  Identities=11%  Similarity=0.179  Sum_probs=92.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ..+|||+|||+|.+++.+|+..|+.+++|+|++..|+    ++++.+++. +++|+++|+.+.    +  ++++||.|++
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~--~~~~fD~Iv~  195 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----L--PGRKYDLIVS  195 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c--CCCCccEEEE
Confidence            4689999999999999999999999999999865554    445555764 699999998543    2  3458999999


Q ss_pred             ECCCCCCCCcc----------h-hhh--------hhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          306 QCPNPDFNRPE----------H-RWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       306 ~fpdpw~k~~h----------~-krR--------l~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      |  .|+.+...          . +.-        -....+++.+.+.|+|||.+++.+.+. . +...+.+.++++.+.
T Consensus       196 N--PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~-~-~~v~~~~~~~~~~~~  270 (284)
T TIGR03533       196 N--PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS-M-EALEEAYPDVPFTWL  270 (284)
T ss_pred             C--CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC-H-HHHHHHHHhCCCcee
Confidence            8  44432211          0 000        123578999999999999999988763 2 567778888777653

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.25  E-value=1.7e-10  Score=104.23  Aligned_cols=117  Identities=15%  Similarity=0.158  Sum_probs=95.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ++++++|||||+|..++++|...|..++|++|..    ....+++++.+.+|++++.+|+.+.+++    .+ ++|.+|+
T Consensus        34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~----~~-~~daiFI  108 (187)
T COG2242          34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD----LP-SPDAIFI  108 (187)
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC----CC-CCCEEEE
Confidence            4789999999999999999999999999999964    4445566778999999999999887531    12 7999999


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCC
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~  363 (416)
                      .-.-.            .+..|+.+...|||||++.+..-..+.....++.+++.++.
T Consensus       109 GGg~~------------i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~  154 (187)
T COG2242         109 GGGGN------------IEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR  154 (187)
T ss_pred             CCCCC------------HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence            73211            25899999999999999999766556666678888998884

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.25  E-value=6.8e-11  Score=117.84  Aligned_cols=122  Identities=16%  Similarity=0.137  Sum_probs=89.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-CCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      +.+|||||||+|.++..+++..+..+++|+|.+..+++.++++ ...|++++.+|+.++     ++++++||.|+++..-
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-----p~~~~sFDvVIs~~~L  188 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-----PFPTDYADRYVSAGSI  188 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-----CCCCCceeEEEEcChh
Confidence            5789999999999999999988888999999877776665543 246799999999876     4457899999886443


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH-H---------------HHHHHHHHHHhCCCCce
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-E---------------VMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~-~---------------~~~~~~~~~~~~~~~~~  365 (416)
                      .+..+.        ...+++++++|||||.+.+..+.. .               -.+++.+.+++.||...
T Consensus       189 ~~~~d~--------~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V  252 (340)
T PLN02490        189 EYWPDP--------QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV  252 (340)
T ss_pred             hhCCCH--------HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence            322221        368999999999999998753211 0               12455567777777643

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.25  E-value=8.8e-11  Score=118.62  Aligned_cols=118  Identities=19%  Similarity=0.214  Sum_probs=83.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCC---CcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI---TNGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l---~nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      ..+|||+|||+|..++.+++++|+.+++++|.+..|.+.+    +.++.   .+++++..|+...    +  .+.+||.|
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~----~--~~~~fDlI  302 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG----V--EPFRFNAV  302 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc----C--CCCCEEEE
Confidence            4689999999999999999999999999999866655444    33443   4789999987543    1  35689999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc-HHHHHHHHHHH
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQF  357 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~-~~~~~~~~~~~  357 (416)
                      ++|.  |++.. |.-..-+..++++.++++|+|||.|++.... .+|...+.+.|
T Consensus       303 lsNP--Pfh~~-~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~f  354 (378)
T PRK15001        303 LCNP--PFHQQ-HALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIF  354 (378)
T ss_pred             EECc--CcccC-ccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHc
Confidence            9983  43321 1100112357899999999999999998532 34555444433

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.24  E-value=3.2e-11  Score=112.78  Aligned_cols=108  Identities=19%  Similarity=0.284  Sum_probs=84.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCC---cEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGIT---NGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~---nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+.+|||||||-|.++..||+.  +.+|+|+|+++.+++-++.+...   ++.+.+..++++..     ..++||+|.+.
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~-----~~~~FDvV~cm  131 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLAS-----AGGQFDVVTCM  131 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHh-----cCCCccEEEEh
Confidence            4689999999999999999998  58999999877776665533222   36688888888732     34799999764


Q ss_pred             -----CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHH
Q 014919          307 -----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF  357 (416)
Q Consensus       307 -----fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~  357 (416)
                           .|||             ..|++.+.+.+||||.++++|-+....-++...+
T Consensus       132 EVlEHv~dp-------------~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~  174 (243)
T COG2227         132 EVLEHVPDP-------------ESFLRACAKLVKPGGILFLSTINRTLKAYLLAII  174 (243)
T ss_pred             hHHHccCCH-------------HHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHH
Confidence                 4555             3799999999999999999998877666665543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.24  E-value=1.7e-10  Score=106.72  Aligned_cols=119  Identities=13%  Similarity=0.194  Sum_probs=90.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHH----HHHHHHhC-CCcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHC----RDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a----~~~a~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+..+||+|||+|.+++.+|+.. +..+++++|++..+    .++++..+ ..|+.++++|+.+.++.    .++++|.|
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~----~~~~~D~V  115 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT----INEKFDRI  115 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh----cCCCCCEE
Confidence            36899999999999999999864 56799999975544    44555567 47899999999875321    24689999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCC
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~  363 (416)
                      +++.....           ...+++.+.+.|+|||++++.+-..+......+.++++++.
T Consensus       116 ~~~~~~~~-----------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~  164 (198)
T PRK00377        116 FIGGGSEK-----------LKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFN  164 (198)
T ss_pred             EECCCccc-----------HHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCC
Confidence            98642211           14789999999999999998654455567788888888874

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.23  E-value=9e-11  Score=112.82  Aligned_cols=101  Identities=18%  Similarity=0.206  Sum_probs=77.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+|+.  ..+++|+|++..+++.+    ...++ .|++++++|+.++ ..   ..+++||.|+
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l-~~---~~~~~fD~V~  117 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI-AQ---HLETPVDLIL  117 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH-hh---hcCCCCCEEE
Confidence            3579999999999999999987  57899999866555443    34454 5799999999886 21   2367899998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ++.+-.|..++        ..+++++.++|||||.+.+..
T Consensus       118 ~~~vl~~~~~~--------~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        118 FHAVLEWVADP--------KSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             ehhHHHhhCCH--------HHHHHHHHHHcCCCeEEEEEE
Confidence            87544443221        378999999999999998753

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.23  E-value=6.9e-11  Score=109.38  Aligned_cols=100  Identities=11%  Similarity=0.091  Sum_probs=75.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|||+|.++..||++  ..+++|+|++..+++.    +...++.|+++.+.|+.++     + .+++||.|++
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~fD~I~~  101 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-----T-FDGEYDFILS  101 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-----C-cCCCcCEEEE
Confidence            3578999999999999999986  5799999986655443    4455778899999998765     2 2467999988


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ++.-.|....      ..+.++++++++|+|||.+++.
T Consensus       102 ~~~~~~~~~~------~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        102 TVVLMFLEAK------TIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             ecchhhCCHH------HHHHHHHHHHHHcCCCcEEEEE
Confidence            7553332111      1258999999999999996553

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.22  E-value=1.4e-10  Score=111.32  Aligned_cols=129  Identities=13%  Similarity=0.183  Sum_probs=92.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC-CCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      ..++||+|||+|.+++.+++..|..+++|+|++..|.+.++++- ..+++++++|+.+.++..+   .++||.|++|  .
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~---~~~fDlVv~N--P  161 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTAL---RGRVDILAAN--A  161 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhc---CCCEeEEEEC--C
Confidence            35899999999999999999999999999998777666554321 1235889999876432211   3579999998  4


Q ss_pred             CCCCCc-----------ch-hhhh--------hhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          310 PDFNRP-----------EH-RWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       310 pw~k~~-----------h~-krRl--------~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      ||....           |. +..+        +...+++.+.+.|+|||.+++.+.... ...+.+.++++++...
T Consensus       162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~-~~~v~~~l~~~g~~~~  236 (251)
T TIGR03704       162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ-APLAVEAFARAGLIAR  236 (251)
T ss_pred             CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch-HHHHHHHHHHCCCCce
Confidence            443211           10 0011        235788889999999999999987654 5678888999887643

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.19  E-value=8.4e-11  Score=113.72  Aligned_cols=102  Identities=16%  Similarity=0.154  Sum_probs=76.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+.+|||||||+|..+..+|+.+ .++++|+|++..+.+.+++.  ...++.|.++|+...     |+++++||.|+++.
T Consensus        52 ~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~-----~~~~~~FD~V~s~~  125 (263)
T PTZ00098         52 ENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK-----DFPENTFDMIYSRD  125 (263)
T ss_pred             CCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC-----CCCCCCeEEEEEhh
Confidence            36789999999999999998875 67999999887766665543  235799999998765     33578999998853


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .-.+.... .     ...++++++++|||||.|++.
T Consensus       126 ~l~h~~~~-d-----~~~~l~~i~r~LkPGG~lvi~  155 (263)
T PTZ00098        126 AILHLSYA-D-----KKKLFEKCYKWLKPNGILLIT  155 (263)
T ss_pred             hHHhCCHH-H-----HHHHHHHHHHHcCCCcEEEEE
Confidence            21111100 1     148899999999999999984

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.19  E-value=2.1e-10  Score=111.13  Aligned_cols=101  Identities=16%  Similarity=0.205  Sum_probs=77.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|..+..+++. .+..+++|+|++..+++.    ....+.+|++|+.+|+.++     ++++++||.|+
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l-----~~~~~~fD~Vi  151 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL-----PVADNSVDVII  151 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC-----CCCCCceeEEE
Confidence            4689999999999988877776 456789999975544444    4445778999999998876     33567999998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .++.-.|...        .+..+++++++|||||+|++.
T Consensus       152 ~~~v~~~~~d--------~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        152 SNCVINLSPD--------KERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             EcCcccCCCC--------HHHHHHHHHHHcCCCcEEEEE
Confidence            8754333221        137899999999999999984

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.19  E-value=5.4e-12  Score=103.22  Aligned_cols=95  Identities=19%  Similarity=0.246  Sum_probs=57.2

Q ss_pred             EEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          235 VDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       235 LDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      ||||||+|.++..+++++|..+++|+|+++.++    ++.......+...+..+..+.... .  ..++||.|++.+.-.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~fD~V~~~~vl~   77 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY-D--PPESFDLVVASNVLH   77 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C-C--C----SEEEEE-TTS
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc-c--cccccceehhhhhHh
Confidence            799999999999999999999999999866555    344444555555555555544211 0  235999999987766


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCcEE
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKV  340 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l  340 (416)
                      |.++        ...+++.+++.|||||.|
T Consensus        78 ~l~~--------~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   78 HLED--------IEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             --S---------HHHHHHHHTTT-TSS-EE
T ss_pred             hhhh--------HHHHHHHHHHHcCCCCCC
Confidence            6521        138999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.18  E-value=4.5e-10  Score=110.95  Aligned_cols=123  Identities=11%  Similarity=0.205  Sum_probs=89.3

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ..|||+|||+|.+++.+|+.+|+.+++|+|++..|++    +++.+++. +++++++|+.+.    +  ++++||.|++|
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----l--~~~~fDlIvsN  208 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----L--PGRRYDLIVSN  208 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----C--CCCCccEEEEC
Confidence            6899999999999999999999999999998665544    44455664 599999998653    2  24689999987


Q ss_pred             CCCCCCCCcc-----------hhh--------hhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919          307 CPNPDFNRPE-----------HRW--------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       307 fpdpw~k~~h-----------~kr--------Rl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~  364 (416)
                        .|+.....           ++.        --....+++.+.+.|+|||.+++.+.+.  .+.+.+.+...++.+
T Consensus       209 --PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~--~~~~~~~~~~~~~~~  281 (307)
T PRK11805        209 --PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS--RVHLEEAYPDVPFTW  281 (307)
T ss_pred             --CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC--HHHHHHHHhhCCCEE
Confidence              44432111           000        0123578999999999999999987754  234667777766544

>TIGR00452 methyltransferase, putative

Probab=99.17  E-value=5.8e-10  Score=110.23  Aligned_cols=100  Identities=11%  Similarity=0.099  Sum_probs=73.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH---HH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL---QL--SGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a---~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..++...+. .++|+|.+..++..+   ++  ....++.+..+++.++     + ...+||.|+
T Consensus       121 ~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-----p-~~~~FD~V~  193 (314)
T TIGR00452       121 KGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-----H-ELYAFDTVF  193 (314)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-----C-CCCCcCEEE
Confidence            4689999999999999999988654 799999765544322   11  1235788999998876     2 235899998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ++..-.|..+        ...+|++++++|||||.|++.+
T Consensus       194 s~gvL~H~~d--------p~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       194 SMGVLYHRKS--------PLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             EcchhhccCC--------HHHHHHHHHHhcCCCCEEEEEE
Confidence            7743332111        1378999999999999999864

Known examples to date are restricted to the proteobacteria.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.17  E-value=1.2e-10  Score=115.88  Aligned_cols=100  Identities=16%  Similarity=0.157  Sum_probs=74.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH--HHHh--C-CCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS--LQLS--G-ITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~--a~~~--~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+++..+. .++|+|.+......  +...  + ..|+.|+.+|+.++     |. +++||.|+
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-----p~-~~~FD~V~  194 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-----PA-LKAFDTVF  194 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-----CC-cCCcCEEE
Confidence            4689999999999999999998765 59999976554332  2111  2 34799999999877     43 67899998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +...-.+      .+.  ...+|+++++.|+|||.+++.+
T Consensus       195 s~~vl~H------~~d--p~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        195 SMGVLYH------RRS--PLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             ECChhhc------cCC--HHHHHHHHHHhcCCCcEEEEEE
Confidence            7532211      111  1378999999999999999863

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.17  E-value=7e-10  Score=112.63  Aligned_cols=132  Identities=17%  Similarity=0.211  Sum_probs=94.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.++||+|||+|.+++.+++.+|+.+++|+|++..|++.++    .++. |++++++|+.+.   .++ ..++||.|++|
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~---~l~-~~~~FDLIVSN  326 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDT---DMP-SEGKWDIIVSN  326 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhcc---ccc-cCCCccEEEEC
Confidence            46899999999999999999999999999998766655443    3443 799999998653   111 24579999998


Q ss_pred             CCCCCCCCcch-----------hhh--------hhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919          307 CPNPDFNRPEH-----------RWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  367 (416)
Q Consensus       307 fpdpw~k~~h~-----------krR--------l~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~  367 (416)
                        .|+......           +..        .+...+++.+.+.|+|||.+++.... +..+.+.+.+++.++.....
T Consensus       327 --PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-~Q~e~V~~ll~~~Gf~~v~v  403 (423)
T PRK14966        327 --PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-DQGAAVRGVLAENGFSGVET  403 (423)
T ss_pred             --CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-cHHHHHHHHHHHCCCcEEEE
Confidence              344332110           000        12347788888999999999998766 45677888888888764444


Q ss_pred             ecc
Q 014919          368 VQD  370 (416)
Q Consensus       368 ~~d  370 (416)
                      ..|
T Consensus       404 ~kD  406 (423)
T PRK14966        404 LPD  406 (423)
T ss_pred             EEc
Confidence            333

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.16  E-value=1.6e-10  Score=103.19  Aligned_cols=123  Identities=20%  Similarity=0.315  Sum_probs=86.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCc-EEEEEcChhhhhhhhhc------cCCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITN-GYFIATNATSTFRSIVA------SYPG  298 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~n-v~f~~~Da~~l~~~~~~------~~~~  298 (416)
                      +.++|||+|||+|.++..|++.-=....+|+|.++.|.+    .+++.+.+| |+|.+.|+..-  .+++      ...+
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~~~qfdlvlDKG  144 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFLSGQFDLVLDKG  144 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cccccceeEEeecC
Confidence            356999999999999999998743445999998665544    456678888 99999999763  2220      0124


Q ss_pred             ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919          299 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       299 s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~  364 (416)
                      .+|.|.+ .||-    + .+|+.   -++..+.+.|+|||+|.+.+ +....+++.+.++..++..
T Consensus       145 T~DAisL-s~d~----~-~~r~~---~Y~d~v~~ll~~~gifvItS-CN~T~dELv~~f~~~~f~~  200 (227)
T KOG1271|consen  145 TLDAISL-SPDG----P-VGRLV---VYLDSVEKLLSPGGIFVITS-CNFTKDELVEEFENFNFEY  200 (227)
T ss_pred             ceeeeec-CCCC----c-cccee---eehhhHhhccCCCcEEEEEe-cCccHHHHHHHHhcCCeEE
Confidence            4444444 2332    1 12222   56788899999999999854 4456788999999987653

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.16  E-value=7.2e-10  Score=108.37  Aligned_cols=123  Identities=14%  Similarity=0.199  Sum_probs=88.2

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+|||+|||+|.+++.+|...|+.+++|+|++..|++    +++.+++.+ +.|+++|+.+.    +  ++.+||.|++|
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~--~~~~fDlIvsN  189 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----L--AGQKIDIIVSN  189 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----C--cCCCccEEEEC
Confidence            5899999999999999999999999999998665554    444556654 99999998653    2  23489999987


Q ss_pred             CCCCCCCCcc---------hhhh----------hhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHh-CCCC
Q 014919          307 CPNPDFNRPE---------HRWR----------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE-YGKG  363 (416)
Q Consensus       307 fpdpw~k~~h---------~krR----------l~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~-~~~~  363 (416)
                        .|+.+...         +..+          .....+++.+.+.|+|||.+++.+.+. ..+.+.+.+.. .+|.
T Consensus       190 --PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-q~~~~~~~~~~~~~~~  263 (284)
T TIGR00536       190 --PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-QQKSLKELLRIKFTWY  263 (284)
T ss_pred             --CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-HHHHHHHHHHhcCCCc
Confidence              44433221         0000          124578999999999999999987653 44455566663 4554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK05785 hypothetical protein; Provisional

Probab=99.15  E-value=3.2e-10  Score=107.28  Aligned_cols=94  Identities=6%  Similarity=0.033  Sum_probs=73.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      +.+|||||||+|..+..+++.. +.+++|+|++..+++.+++.    ..++++|+..+     |+++++||.|++.|.-.
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~----~~~~~~d~~~l-----p~~d~sfD~v~~~~~l~  121 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA----DDKVVGSFEAL-----PFRDKSFDVVMSSFALH  121 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc----cceEEechhhC-----CCCCCCEEEEEecChhh
Confidence            5789999999999999999987 57999999998888876543    24678998876     55789999999987544


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCc-EEEE
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFL  342 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG-~l~l  342 (416)
                      |..+        .+..+++++|+|||.. .+.+
T Consensus       122 ~~~d--------~~~~l~e~~RvLkp~~~ile~  146 (226)
T PRK05785        122 ASDN--------IEKVIAEFTRVSRKQVGFIAM  146 (226)
T ss_pred             ccCC--------HHHHHHHHHHHhcCceEEEEe
Confidence            4322        1478999999999953 3444

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.15  E-value=1.7e-10  Score=112.04  Aligned_cols=100  Identities=21%  Similarity=0.258  Sum_probs=70.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||.|.++..+|+++ +++++||.++..    +.+++++.|++ ++++..+|..++        +.+||.|+
T Consensus        62 ~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~--------~~~fD~Iv  132 (273)
T PF02353_consen   62 PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL--------PGKFDRIV  132 (273)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----------S-SEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc--------CCCCCEEE
Confidence            47899999999999999999998 899999998643    45556667876 599999998776        34899987


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ..-.--     |-. +-..+.|++.+.++|||||.+++.+
T Consensus       133 Si~~~E-----hvg-~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  133 SIEMFE-----HVG-RKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             EESEGG-----GTC-GGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             EEechh-----hcC-hhHHHHHHHHHHHhcCCCcEEEEEe
Confidence            652211     111 1123699999999999999998864

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK08317 hypothetical protein; Provisional

Probab=99.15  E-value=3.2e-10  Score=106.46  Aligned_cols=101  Identities=17%  Similarity=0.169  Sum_probs=78.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHHh---CCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~~---~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..|||+|||+|.++..+++.+ |..+++|+|.+...++.++++   ...|+.+..+|+..+     ++.+++||.|++
T Consensus        19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~v~~   93 (241)
T PRK08317         19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL-----PFPDGSFDAVRS   93 (241)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC-----CCCCCCceEEEE
Confidence            36799999999999999999987 788999999876655544433   346899999998765     335678999988


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ...-.+..+.        ..+++++.++|+|||.+++.
T Consensus        94 ~~~~~~~~~~--------~~~l~~~~~~L~~gG~l~~~  123 (241)
T PRK08317         94 DRVLQHLEDP--------ARALAEIARVLRPGGRVVVL  123 (241)
T ss_pred             echhhccCCH--------HHHHHHHHHHhcCCcEEEEE
Confidence            6443332221        47899999999999999875

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.15  E-value=3.6e-10  Score=106.02  Aligned_cols=101  Identities=12%  Similarity=0.124  Sum_probs=78.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC------CeEEEEchHHHH----HHHHHHhCCC---cEEEEEcChhhhhhhhhccC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKD------LNFLGLELVTHC----RDSLQLSGIT---NGYFIATNATSTFRSIVASY  296 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~------~~~iGvD~~~~a----~~~a~~~~l~---nv~f~~~Da~~l~~~~~~~~  296 (416)
                      ++..+||++||||..+..+.+..+.      .+++.+|++..+    .+++.+.++.   .+.++++||+++     |++
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-----pFd  174 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-----PFD  174 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-----CCC
Confidence            4689999999999999999988666      899999975544    4444444553   399999999998     567


Q ss_pred             CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       297 ~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ++++|..++.|.--..  .|.      ++.|++.+|+|||||+|++-
T Consensus       175 d~s~D~yTiafGIRN~--th~------~k~l~EAYRVLKpGGrf~cL  213 (296)
T KOG1540|consen  175 DDSFDAYTIAFGIRNV--THI------QKALREAYRVLKPGGRFSCL  213 (296)
T ss_pred             CCcceeEEEecceecC--CCH------HHHHHHHHHhcCCCcEEEEE
Confidence            9999999887642111  111      47899999999999998863

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=3.8e-10  Score=109.19  Aligned_cols=124  Identities=18%  Similarity=0.239  Sum_probs=86.9

Q ss_pred             ccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCce
Q 014919          225 AYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKL  300 (416)
Q Consensus       225 ~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~  300 (416)
                      .++......|||+|||.|..++.||+.+|+.+++-+|++..|+    +++..++++|..+...|..+-       -.++|
T Consensus       153 ~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-------v~~kf  225 (300)
T COG2813         153 TLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-------VEGKF  225 (300)
T ss_pred             hCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-------ccccc
Confidence            3433335589999999999999999999999999999755554    455567788876666665442       13489


Q ss_pred             eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC-cHHHHHHHHHHHH
Q 014919          301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFL  358 (416)
Q Consensus       301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD-~~~~~~~~~~~~~  358 (416)
                      |.|.+|  .|.+. .+.--.-+-.++++...+.|++||.|++... ..+|...|.+.|.
T Consensus       226 d~IisN--PPfh~-G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg  281 (300)
T COG2813         226 DLIISN--PPFHA-GKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG  281 (300)
T ss_pred             cEEEeC--CCccC-CcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence            999998  55442 2211111124899999999999999999764 3445555555543

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.14  E-value=3.4e-10  Score=104.63  Aligned_cols=98  Identities=9%  Similarity=-0.012  Sum_probs=71.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ..+|||+|||+|.++..+|++  ..+++|+|++..+++.    +...+++ +++...|+...     + .++++|.|+++
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~-----~-~~~~fD~I~~~  101 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAA-----A-LNEDYDFIFST  101 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhc-----c-ccCCCCEEEEe
Confidence            578999999999999999986  5799999986655544    3344553 77888887543     2 24679999887


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ++-.+....      ..+.++++++++|+|||.+++.
T Consensus       102 ~~~~~~~~~------~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       102 VVFMFLQAG------RVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             cccccCCHH------HHHHHHHHHHHHhCCCcEEEEE
Confidence            543322111      1248899999999999996654

Part of a tellurite-reducing operon tehA and tehB

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.14  E-value=3.2e-10  Score=106.27  Aligned_cols=96  Identities=20%  Similarity=0.256  Sum_probs=74.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..||+..+ +.+++|+|++    ..|.+++++.+++|++++++|+.+.+.     ...+||.|+
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~-----~~~~fD~Ii  151 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE-----PLAPYDRIY  151 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc-----ccCCCCEEE
Confidence            468999999999999999999864 5679999964    445566667788899999999976521     246899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +..+.+              ...+.+.+.|+|||++++..
T Consensus       152 ~~~~~~--------------~~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       152 VTAAGP--------------KIPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             EcCCcc--------------cccHHHHHhcCcCcEEEEEE
Confidence            875432              23456788999999999864

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.14  E-value=2.5e-10  Score=110.08  Aligned_cols=100  Identities=16%  Similarity=0.185  Sum_probs=77.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.++||||||.|..++.+|+++ +.+++|+++|+.    +.+++.+.|++ |++++..|-.++        .+.||.|+
T Consensus        72 ~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~--------~e~fDrIv  142 (283)
T COG2230          72 PGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF--------EEPFDRIV  142 (283)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc--------ccccceee
Confidence            58999999999999999999999 899999998654    44555667887 899999998876        34499986


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ..-.--++...      -.+.|++.++++|+|||.+.+.+
T Consensus       143 SvgmfEhvg~~------~~~~ff~~~~~~L~~~G~~llh~  176 (283)
T COG2230         143 SVGMFEHVGKE------NYDDFFKKVYALLKPGGRMLLHS  176 (283)
T ss_pred             ehhhHHHhCcc------cHHHHHHHHHhhcCCCceEEEEE
Confidence            54111111111      13699999999999999998864

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.13  E-value=3.3e-10  Score=105.88  Aligned_cols=108  Identities=13%  Similarity=0.160  Sum_probs=76.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhh--hhhh-ccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF--RSIV-ASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~--~~~~-~~~~~s~D~v~~  305 (416)
                      .+..|||||||+|.++..++++. +...++|||++..       ....|+.++++|+.+..  +... ++.++++|.|++
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S  123 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS  123 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence            36799999999999999999986 4579999999661       24568999999998741  1110 124678999998


Q ss_pred             ECCCCCCCCcc-hhhhh--hhHHHHHHHHhhccCCcEEEEEe
Q 014919          306 QCPNPDFNRPE-HRWRM--VQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       306 ~fpdpw~k~~h-~krRl--~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +....|...+- ..-+.  ....+|+++.++|||||.|++.+
T Consensus       124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~  165 (209)
T PRK11188        124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV  165 (209)
T ss_pred             CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            75333322110 00000  12478999999999999999964

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.13  E-value=1.2e-09  Score=105.70  Aligned_cols=125  Identities=15%  Similarity=0.205  Sum_probs=91.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh----CCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~----~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ....|||+|||+|.++..+++..|..+++|+|++..+++.++++    ...|+.++++|+...    +  .+++||.|++
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~----~--~~~~fD~Iv~  181 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP----L--PGGRFDLIVS  181 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc----C--CCCceeEEEE
Confidence            35789999999999999999999999999999877666555432    345899999998543    1  2578999998


Q ss_pred             ECCCCCCCCcch------------hhh--------hhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCC
Q 014919          306 QCPNPDFNRPEH------------RWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       306 ~fpdpw~k~~h~------------krR--------l~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~  363 (416)
                      |.  |+......            ...        .....+++.+.+.|+|||.+++.+.+. ..+.+.+.+.+.++.
T Consensus       182 np--Py~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~-~~~~~~~~l~~~gf~  256 (275)
T PRK09328        182 NP--PYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD-QGEAVRALLAAAGFA  256 (275)
T ss_pred             CC--CcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch-HHHHHHHHHHhCCCc
Confidence            73  33322110            000        113578889999999999999988664 456677888887775

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=8.8e-10  Score=103.93  Aligned_cols=116  Identities=21%  Similarity=0.237  Sum_probs=101.3

Q ss_pred             CCCeEEEEeccccHHHHHHHH-hCCCCeEEEEch----HHHHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMAR-KRKDLNFLGLEL----VTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~-~~p~~~~iGvD~----~~~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||.|.|+|.++..||. ..|..+++.+|+    .+.|++++++.++.| +.+..+|+.+..      ....||.|
T Consensus        94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~------~~~~vDav  167 (256)
T COG2519          94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI------DEEDVDAV  167 (256)
T ss_pred             CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc------cccccCEE
Confidence            478999999999999999997 468889999995    567888888888877 999999998762      24489999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~  364 (416)
                      ++-.||||             .+++.+++.|||||.+.+-+..-+..+...+.+++.+|-.
T Consensus       168 ~LDmp~PW-------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~  215 (256)
T COG2519         168 FLDLPDPW-------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVD  215 (256)
T ss_pred             EEcCCChH-------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccc
Confidence            99999999             8899999999999999998888888888889999987753

>PRK06922 hypothetical protein; Provisional

Probab=99.12  E-value=2.7e-10  Score=120.57  Aligned_cols=110  Identities=15%  Similarity=0.221  Sum_probs=80.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh---CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~---~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      +.+|||||||+|.++..+|+.+|+.+++|+|++..+++.++++   ...++.++++|+.++ +..|  ++++||.|++++
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dL-p~~f--edeSFDvVVsn~  495 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINL-SSSF--EKESVDTIVYSS  495 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhC-cccc--CCCCEEEEEEch
Confidence            5799999999999999999999999999999877766655432   124688999999876 3334  578999998775


Q ss_pred             CCCCC-C----CcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          308 PNPDF-N----RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       308 pdpw~-k----~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +-.|. .    ....-.......+|++++++|||||.+++.
T Consensus       496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~  536 (677)
T PRK06922        496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR  536 (677)
T ss_pred             HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            43321 0    000000012258899999999999999996

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1e-09  Score=106.95  Aligned_cols=120  Identities=17%  Similarity=0.293  Sum_probs=91.9

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .|||||||+|..++.+|++.|+++++|+|++..|+    ++++.+++.|+.++++|..+-       ..+.||.|.+|  
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-------~~~~fDlIVsN--  183 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-------LRGKFDLIVSN--  183 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-------cCCceeEEEeC--
Confidence            79999999999999999999999999999876655    455566777777777764332       24589999998  


Q ss_pred             CCCCCCc----------c-hh--------hhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCC
Q 014919          309 NPDFNRP----------E-HR--------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK  362 (416)
Q Consensus       309 dpw~k~~----------h-~k--------rRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~  362 (416)
                      .||.+..          | +.        ..-+...++..+.+.|+|||.+.+.+... ..+.+.+.+.+.++
T Consensus       184 PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~-q~~~v~~~~~~~~~  255 (280)
T COG2890         184 PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT-QGEAVKALFEDTGF  255 (280)
T ss_pred             CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC-cHHHHHHHHHhcCC
Confidence            6665443          1 00        01235688999999999999999987643 46678888988884

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.11  E-value=4e-10  Score=117.80  Aligned_cols=100  Identities=18%  Similarity=0.173  Sum_probs=78.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CC-CcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+.+|||||||+|..+..+|+.. +++++|+|++..+++.++++  +. .++.|+++|+...     ++++++||.|++.
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~I~s~  339 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKK-----TYPDNSFDVIYSR  339 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccC-----CCCCCCEEEEEEC
Confidence            36799999999999999999876 77999999987777665432  33 3699999998765     3356789999876


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ..-.|..++        +.++++++++|||||.+++.
T Consensus       340 ~~l~h~~d~--------~~~l~~~~r~LkpgG~l~i~  368 (475)
T PLN02336        340 DTILHIQDK--------PALFRSFFKWLKPGGKVLIS  368 (475)
T ss_pred             CcccccCCH--------HHHHHHHHHHcCCCeEEEEE
Confidence            443333221        48899999999999999986

>PRK14968 putative methyltransferase; Provisional

Probab=99.11  E-value=1.6e-09  Score=98.36  Aligned_cols=125  Identities=16%  Similarity=0.222  Sum_probs=86.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCc--EEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITN--GYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~n--v~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      ++..+||+|||+|.++..++++  ..+++|+|++..+.+    ++..+++.+  +.++++|..+.    +  .+.++|.|
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~--~~~~~d~v   94 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----F--RGDKFDVI   94 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----c--cccCceEE
Confidence            4678999999999999999988  689999997655444    344456555  89999997553    2  34589999


Q ss_pred             EEECCCCCCCCcc-------------h--hhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919          304 SIQCPNPDFNRPE-------------H--RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       304 ~~~fpdpw~k~~h-------------~--krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~  364 (416)
                      +++.|  +.....             .  ..+...+.+++++.++|||||.+++........+.+.+.+.+.++..
T Consensus        95 i~n~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~  168 (188)
T PRK14968         95 LFNPP--YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEA  168 (188)
T ss_pred             EECCC--cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCee
Confidence            88743  211000             0  00112357899999999999998876433223455777888888764

>PRK14967 putative methyltransferase; Provisional

Probab=99.10  E-value=1.9e-09  Score=101.68  Aligned_cols=124  Identities=19%  Similarity=0.176  Sum_probs=85.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||+|||+|.++..+++. +..+++|+|++..+++.    ++..+. ++.++++|+...    +  .+++||.|+++
T Consensus        37 ~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~----~--~~~~fD~Vi~n  108 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA----V--EFRPFDVVVSN  108 (223)
T ss_pred             CCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh----c--cCCCeeEEEEC
Confidence            579999999999999999986 34589999986655543    333444 688999987653    2  35789999987


Q ss_pred             CCCCCCCCcch---------------hhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919          307 CPNPDFNRPEH---------------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       307 fpdpw~k~~h~---------------krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~  364 (416)
                      -  |+......               ........+++++.++|||||++++.+.........++.+++.++..
T Consensus       109 p--Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~  179 (223)
T PRK14967        109 P--PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDA  179 (223)
T ss_pred             C--CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCe
Confidence            3  33321110               00112357889999999999999985433223445667778777653

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.09  E-value=4.6e-10  Score=105.44  Aligned_cols=119  Identities=16%  Similarity=0.202  Sum_probs=84.2

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      +|||||||+|.++..+|+.+|+.+++|+|++..+.    +++...++ .+++++.+|+...     + .+++||.|+...
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-----~-~~~~fD~I~~~~   75 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-----P-FPDTYDLVFGFE   75 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-----C-CCCCCCEeehHH
Confidence            69999999999999999999999999999865444    34444455 3699999998654     2 245899998653


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH------------H---HHHHHHHHHHhCCCCce
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE------------E---VMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~------------~---~~~~~~~~~~~~~~~~~  365 (416)
                      .-.+..+        .+.++++++++|||||.+++..-..            .   ...+..+.+.+.|+...
T Consensus        76 ~l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~  140 (224)
T smart00828       76 VIHHIKD--------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV  140 (224)
T ss_pred             HHHhCCC--------HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence            2222111        1489999999999999999853110            0   12345567788887654

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.07  E-value=1.8e-09  Score=113.53  Aligned_cols=131  Identities=15%  Similarity=0.202  Sum_probs=93.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ..+|||+|||+|.+++.+|+.+|+.+++|+|++..|++.+    +.+++. ++.++++|+.+.    +  ..++||.|++
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~----~--~~~~fDlIvs  212 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN----I--EKQKFDFIVS  212 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh----C--cCCCccEEEE
Confidence            4689999999999999999999999999999876655544    444654 699999997543    1  3568999999


Q ss_pred             ECCCCCCCCcc-----------h-hh--------hhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          306 QCPNPDFNRPE-----------H-RW--------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       306 ~fpdpw~k~~h-----------~-kr--------Rl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      |  .|+.....           . ..        ......+++.+.++|+|||.+++.+... ..+.+.+.+.+.++...
T Consensus       213 N--PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~-q~~~v~~~~~~~g~~~~  289 (506)
T PRK01544        213 N--PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK-QEEAVTQIFLDHGYNIE  289 (506)
T ss_pred             C--CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc-hHHHHHHHHHhcCCCce
Confidence            8  34432111           0 00        0123567889999999999999986543 56667788888887644


Q ss_pred             eeecc
Q 014919          366 VLVQD  370 (416)
Q Consensus       366 ~~~~d  370 (416)
                      .+..|
T Consensus       290 ~~~~D  294 (506)
T PRK01544        290 SVYKD  294 (506)
T ss_pred             EEEec
Confidence            44334

>PRK01581 speE spermidine synthase; Validated

Probab=99.07  E-value=2.8e-09  Score=106.27  Aligned_cols=127  Identities=16%  Similarity=0.122  Sum_probs=95.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-----------CCCcEEEEEcChhhhhhhhhccCCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-----------GITNGYFIATNATSTFRSIVASYPG  298 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-----------~l~nv~f~~~Da~~l~~~~~~~~~~  298 (416)
                      +..+||+||||.|..+..+.+..+..++++||+.+..++.|++.           .-++++++.+|+.+++..    .++
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~----~~~  225 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS----PSS  225 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh----cCC
Confidence            46899999999999888888765568999999877666655531           135799999999987542    356


Q ss_pred             ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHH----HHHHHHHHhCCCC
Q 014919          299 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM----LRMKQQFLEYGKG  363 (416)
Q Consensus       299 s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~----~~~~~~~~~~~~~  363 (416)
                      +||.|++.++||...   .-.++...+|++.+++.|+|||.+.+......+.    ..+.+.+++.++.
T Consensus       226 ~YDVIIvDl~DP~~~---~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~  291 (374)
T PRK01581        226 LYDVIIIDFPDPATE---LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLT  291 (374)
T ss_pred             CccEEEEcCCCcccc---chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCc
Confidence            899999999888632   1235667899999999999999999886654332    3345666766543

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.07  E-value=1.1e-09  Score=102.52  Aligned_cols=96  Identities=17%  Similarity=0.246  Sum_probs=73.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+|+.. ++.+++|+|++    ..|.++++..+..|++++++|+...+    + ..+.||.|+
T Consensus        76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~----~-~~~~fD~I~  150 (212)
T PRK13942         76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY----E-ENAPYDRIY  150 (212)
T ss_pred             CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC----C-cCCCcCEEE
Confidence            46899999999999999999875 45799999964    44555556668889999999987652    1 357899998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +...-+              ...+.+.+.|||||++++..
T Consensus       151 ~~~~~~--------------~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        151 VTAAGP--------------DIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             ECCCcc--------------cchHHHHHhhCCCcEEEEEE
Confidence            864322              22346777999999998853

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.07  E-value=1.6e-09  Score=108.54  Aligned_cols=116  Identities=16%  Similarity=0.246  Sum_probs=80.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ..+|||+|||+|.++..+++++|+.+++++|++..|++.+    +.+++. .+++.+|+...       .+++||.|++|
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~-------~~~~fDlIvsN  268 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD-------IKGRFDMIISN  268 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc-------cCCCccEEEEC
Confidence            4589999999999999999999999999999866655544    445553 56777776442       25789999998


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc-HHHHHHHHHHH
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQF  357 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~-~~~~~~~~~~~  357 (416)
                      .|  .+....... -....+++.+.+.|||||.|++.... .+|...+.+.|
T Consensus       269 PP--FH~g~~~~~-~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~F  317 (342)
T PRK09489        269 PP--FHDGIQTSL-DAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETF  317 (342)
T ss_pred             CC--ccCCccccH-HHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHc
Confidence            44  322111100 12258999999999999999987543 44544433333

>PHA03411 putative methyltransferase; Provisional

Probab=99.06  E-value=1.9e-09  Score=103.84  Aligned_cols=124  Identities=13%  Similarity=0.026  Sum_probs=92.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      ..+|||+|||+|.++..++++.+..+++|+|++..+.+.++++ .+++.++++|+.++.      .+.+||.|++|  .|
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n-~~~v~~v~~D~~e~~------~~~kFDlIIsN--PP  135 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL-LPEAEWITSDVFEFE------SNEKFDVVISN--PP  135 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-CcCCEEEECchhhhc------ccCCCcEEEEc--CC
Confidence            4689999999999999999888778999999988888877553 568999999998762      24689999998  45


Q ss_pred             CCCCcchhhh----h----------hhHHHHHHHHhhccCCcEEEEEeCcHHHH------HHHHHHHHhCCCC
Q 014919          311 DFNRPEHRWR----M----------VQRSLVEAVSDLLVHDGKVFLQSDIEEVM------LRMKQQFLEYGKG  363 (416)
Q Consensus       311 w~k~~h~krR----l----------~~~~~l~~i~r~LkpgG~l~l~tD~~~~~------~~~~~~~~~~~~~  363 (416)
                      |+.....+++    .          .-.+++......|+|+|.+.+..+..+++      .+..+.++++|+.
T Consensus       136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~  208 (279)
T PHA03411        136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV  208 (279)
T ss_pred             ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence            5432221111    1          12588999999999999988876665553      2335567788764

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.06  E-value=1e-09  Score=100.59  Aligned_cols=120  Identities=14%  Similarity=0.055  Sum_probs=81.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhh--h---hhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF--R---SIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~--~---~~~~~~~~s~D~v  303 (416)
                      .+..|||||||+|.++..+++++ +..+++|+|++...       ...|+.++++|+.+..  +   +.+  .++++|.|
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-------~~~~i~~~~~d~~~~~~~~~l~~~~--~~~~~D~V  102 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-------PIENVDFIRGDFTDEEVLNKIRERV--GDDKVDVV  102 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-------cCCCceEEEeeCCChhHHHHHHHHh--CCCCccEE
Confidence            36899999999999999999886 56789999997632       3467899999986531  1   112  35689999


Q ss_pred             EEECCCC----CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHh
Q 014919          304 SIQCPNP----DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE  359 (416)
Q Consensus       304 ~~~fpdp----w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~  359 (416)
                      +++.+.+    |. ..|.........+++.+.++|+|||++++......-...+.+.++.
T Consensus       103 ~~~~~~~~~g~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~  161 (188)
T TIGR00438       103 MSDAAPNISGYWD-IDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK  161 (188)
T ss_pred             EcCCCCCCCCCcc-ccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh
Confidence            9865422    21 1121111123578999999999999999965433233334444444

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.06  E-value=1.2e-09  Score=108.89  Aligned_cols=121  Identities=14%  Similarity=0.124  Sum_probs=86.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..+||+|||+|.+++.++..  ..+++|+|++..+    .++++..+++++.++++|+.++     |..++++|.|++
T Consensus       182 ~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l-----~~~~~~~D~Iv~  254 (329)
T TIGR01177       182 EGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL-----PLSSESVDAIAT  254 (329)
T ss_pred             CcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC-----CcccCCCCEEEE
Confidence            3678999999999999987764  6799999975544    4455566888899999999886     334678999998


Q ss_pred             ECCCCCCCCcchh---hhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCC
Q 014919          306 QCPNPDFNRPEHR---WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK  362 (416)
Q Consensus       306 ~fpdpw~k~~h~k---rRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~  362 (416)
                      +  .|+......+   ..-....+++++.++|||||++.+.+....   .+.+.+++++|
T Consensus       255 d--PPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~---~~~~~~~~~g~  309 (329)
T TIGR01177       255 D--PPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI---DLESLAEDAFR  309 (329)
T ss_pred             C--CCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC---CHHHHHhhcCc
Confidence            7  3432211111   112246899999999999999988764432   23455677777

This family is found exclusively in the Archaea.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.06  E-value=3.8e-10  Score=99.53  Aligned_cols=97  Identities=20%  Similarity=0.295  Sum_probs=73.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      ....|||||||+|.++..+++..  .+++|+|++..+.+.      .++.+...+....     +.++++||.|+++..-
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~fD~i~~~~~l   88 (161)
T PF13489_consen   22 PGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK------RNVVFDNFDAQDP-----PFPDGSFDLIICNDVL   88 (161)
T ss_dssp             TTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH------TTSEEEEEECHTH-----HCHSSSEEEEEEESSG
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh------hhhhhhhhhhhhh-----hccccchhhHhhHHHH
Confidence            57899999999999999997763  399999998877765      4444444444433     1147899999998654


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  347 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~  347 (416)
                      .|.++        ...+|+.++++|||||.+++.+...
T Consensus        89 ~~~~d--------~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   89 EHLPD--------PEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             GGSSH--------HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             hhccc--------HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            44331        1489999999999999999987553

...

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.05  E-value=1.6e-09  Score=100.95  Aligned_cols=96  Identities=10%  Similarity=0.135  Sum_probs=72.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||||||+|..+..+|+..+ ..+++|+|++..    |.++++..++. |++++.+|+.+.+    + ...+||.|
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~I  146 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL----E-KHAPFDAI  146 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC----c-cCCCccEE
Confidence            357999999999999999998764 568999997554    44455556665 5999999997652    2 34689999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ++...-+              .+.+++.+.|+|||+|++..
T Consensus       147 i~~~~~~--------------~~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        147 IVTAAAS--------------TIPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             EEccCcc--------------hhhHHHHHhcCcCcEEEEEE
Confidence            9875433              23357789999999998853

>PRK00811 spermidine synthase; Provisional

Probab=99.05  E-value=2.5e-09  Score=104.59  Aligned_cols=123  Identities=13%  Similarity=0.120  Sum_probs=90.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh---------CCCcEEEEEcChhhhhhhhhccCCCce
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---------GITNGYFIATNATSTFRSIVASYPGKL  300 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~---------~l~nv~f~~~Da~~l~~~~~~~~~~s~  300 (416)
                      +..+||+||||+|..+..+++..+..++++||+.....+.+++.         .-++++++.+|+..++..    .+++|
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~----~~~~y  151 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE----TENSF  151 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh----CCCcc
Confidence            46789999999999999998765567899999755544443321         135799999999887532    36789


Q ss_pred             eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhC
Q 014919          301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  360 (416)
Q Consensus       301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~  360 (416)
                      |.|++..+||+....    ++...+|++.+++.|+|||.+.+.+..    .+.+..+.+.+++.
T Consensus       152 DvIi~D~~dp~~~~~----~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~  211 (283)
T PRK00811        152 DVIIVDSTDPVGPAE----GLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV  211 (283)
T ss_pred             cEEEECCCCCCCchh----hhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence            999998888873221    355679999999999999999987543    23344455555554

>PRK04457 spermidine synthase; Provisional

Probab=99.04  E-value=4.1e-09  Score=101.92  Aligned_cols=122  Identities=9%  Similarity=0.028  Sum_probs=86.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh----C-CCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----G-ITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~----~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ....|||||||+|.++..+++.+|+.+++++|+.....+.+++.    + .++++++.+|+.+.+..    .++++|.|+
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~----~~~~yD~I~  141 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV----HRHSTDVIL  141 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh----CCCCCCEEE
Confidence            45789999999999999999999999999999866665555432    2 26799999999887542    246899998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe-CcHHHHHHHHHHHHh
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLE  359 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t-D~~~~~~~~~~~~~~  359 (416)
                      +...++   .. ....+...+|++.+.+.|+|||.+.+.. .........++.+++
T Consensus       142 ~D~~~~---~~-~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~  193 (262)
T PRK04457        142 VDGFDG---EG-IIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLES  193 (262)
T ss_pred             EeCCCC---CC-CccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHH
Confidence            753221   11 1112345699999999999999998842 222233444555544

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.03  E-value=1.9e-09  Score=100.39  Aligned_cols=101  Identities=15%  Similarity=0.187  Sum_probs=78.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC-CeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+.+|||+|||+|.++..+++..|. .+++|+|++..+.+.++++  ...+++++.+|+.+.     ++.++++|.|+++
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~i~~~  113 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEAL-----PFEDNSFDAVTIA  113 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcC-----CCCCCcEEEEEEe
Confidence            3679999999999999999999886 7999999876666555433  235799999999876     2246789999877


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +...+...        ...+++.+.+.|+|||.+++.
T Consensus       114 ~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~  142 (223)
T TIGR01934       114 FGLRNVTD--------IQKALREMYRVLKPGGRLVIL  142 (223)
T ss_pred             eeeCCccc--------HHHHHHHHHHHcCCCcEEEEE
Confidence            54322211        137899999999999999875

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.03  E-value=1.3e-09  Score=106.68  Aligned_cols=98  Identities=11%  Similarity=0.098  Sum_probs=73.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.++||||||+|.++..+|+.  +.+++|+|++..+++.    ++..++ ++++...|+...     + .+++||.|+++
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~-----~-~~~~fD~I~~~  191 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSA-----S-IQEEYDFILST  191 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcc-----c-ccCCccEEEEc
Confidence            458999999999999999986  5799999986665544    445566 899999988664     2 26789999877


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +.-.+....      ..+.+++++.++|+|||++++.
T Consensus       192 ~vl~~l~~~------~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        192 VVLMFLNRE------RIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             chhhhCCHH------HHHHHHHHHHHhcCCCcEEEEE
Confidence            543321111      1248899999999999996664

>PLN03075 nicotianamine synthase; Provisional

Probab=99.03  E-value=1.1e-09  Score=106.84  Aligned_cols=103  Identities=11%  Similarity=0.113  Sum_probs=74.7

Q ss_pred             CCCeEEEEecccc--HHHHHHHHhCCCCeEEEEchHHHHHHH----HHH-hCCC-cEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNG--LFLLGMARKRKDLNFLGLELVTHCRDS----LQL-SGIT-NGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G--~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~-~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      .+.+|+|||||.|  ..++.+++.+|+.+|+|+|+++.+.+.    +.. .++. +++|.++|+.+..    + ..+.||
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~----~-~l~~FD  197 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT----E-SLKEYD  197 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc----c-ccCCcC
Confidence            4688999999988  444445567899999999976554443    322 4554 5999999998752    1 236799


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .|++..--.|-+..       ..+.++.+++.|+|||.+++.+
T Consensus       198 lVF~~ALi~~dk~~-------k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        198 VVFLAALVGMDKEE-------KVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             EEEEeccccccccc-------HHHHHHHHHHhcCCCcEEEEec
Confidence            99987322232222       1488999999999999999987

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.03  E-value=9e-10  Score=103.24  Aligned_cols=102  Identities=18%  Similarity=0.109  Sum_probs=71.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH-HhCC---------------CcEEEEEcChhhhhhhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ-LSGI---------------TNGYFIATNATSTFRSIV  293 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~-~~~l---------------~nv~f~~~Da~~l~~~~~  293 (416)
                      .+.++||+|||.|..++.||++  +.+|+|+|++..|++.+. ++++               .+|+++++|+.++...  
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--  109 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA--  109 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc--
Confidence            3679999999999999999987  889999999998888743 3332               3689999999876211  


Q ss_pred             ccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          294 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       294 ~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                        ..+.||.|+-...-... .+.     ..+.+++.+.++|||||++++.
T Consensus       110 --~~~~fD~i~D~~~~~~l-~~~-----~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       110 --DLGPVDAVYDRAALIAL-PEE-----MRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             --cCCCcCEEEechhhccC-CHH-----HHHHHHHHHHHHcCCCCeEEEE
Confidence              12456666422100000 011     1247899999999999986665

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.02  E-value=2e-09  Score=106.18  Aligned_cols=100  Identities=14%  Similarity=0.113  Sum_probs=74.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ...++||||||+|.++..+++++|+.+++++|.   ++.+.+++++.++. +++++.+|+.+.   .+  +  ..|.+++
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~---~~--~--~~D~v~~  221 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE---SY--P--EADAVLF  221 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCC---CC--C--CCCEEEe
Confidence            357999999999999999999999999999995   45556666666764 699999998753   12  2  2588765


Q ss_pred             ECCCC-CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNP-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdp-w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ..... |. ..      ....+|++++++|+|||++++.
T Consensus       222 ~~~lh~~~-~~------~~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       222 CRILYSAN-EQ------LSTIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             EhhhhcCC-hH------HHHHHHHHHHHhcCCCCEEEEE
Confidence            53211 21 10      1137899999999999999885

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK03612 spermidine synthase; Provisional

Probab=99.02  E-value=4.4e-09  Score=111.11  Aligned_cols=125  Identities=16%  Similarity=0.194  Sum_probs=95.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC-CeEEEEchHHHHHHHHHHh-----------CCCcEEEEEcChhhhhhhhhccCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLS-----------GITNGYFIATNATSTFRSIVASYP  297 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~~a~~~a~~~-----------~l~nv~f~~~Da~~l~~~~~~~~~  297 (416)
                      +..+|||||||+|..+..+++ +|. .+++++|+.+...+.++++           .-++++++.+|+.+.+..    .+
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----~~  371 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----LA  371 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh----CC
Confidence            467899999999999999887 455 7999999877666655541           125799999999987542    35


Q ss_pred             CceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhCCC
Q 014919          298 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYGK  362 (416)
Q Consensus       298 ~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~~~  362 (416)
                      ++||.|++++|||+...   ..++...+|++.+.+.|+|||.+.+++..    .+.+..+.+.+++.++
T Consensus       372 ~~fDvIi~D~~~~~~~~---~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf  437 (521)
T PRK03612        372 EKFDVIIVDLPDPSNPA---LGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL  437 (521)
T ss_pred             CCCCEEEEeCCCCCCcc---hhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence            78999999999987322   12456679999999999999999987532    3445566777888776

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.01  E-value=5.3e-09  Score=99.82  Aligned_cols=120  Identities=16%  Similarity=0.205  Sum_probs=96.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEch----HHHHHHHHHHhCCC-cEEEEEcChhhhhhhhhcc-CCCceeE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEL----VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL  302 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~----~~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~-~~~s~D~  302 (416)
                      .+.+|||-|.|+|.++..||+. .|.-+++..|.    ...|+++.+..++. |+.+.+.|+..-   -|+. .+..+|.
T Consensus        40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~---g~~~~~~~~~Da  116 (247)
T PF08704_consen   40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEE---GFDEELESDFDA  116 (247)
T ss_dssp             TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-----STT-TTSEEE
T ss_pred             CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecc---cccccccCcccE
Confidence            3799999999999999999975 68899999995    56778888888885 899999999642   1210 1467999


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhc-cCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL-VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~L-kpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      |++-.|+||             ..+..+.++| +|||.+.+-+.+-+....+.+.+++++|..+
T Consensus       117 vfLDlp~Pw-------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i  167 (247)
T PF08704_consen  117 VFLDLPDPW-------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDI  167 (247)
T ss_dssp             EEEESSSGG-------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEE
T ss_pred             EEEeCCCHH-------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeee
Confidence            999999999             6788999999 9999999988888889999999999987543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.00  E-value=3.3e-09  Score=99.85  Aligned_cols=100  Identities=15%  Similarity=0.183  Sum_probs=75.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHHHHHHHH----hCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a~~~a~~----~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      +.+|||||||+|.++..+++..| +.+++|+|++..+.+.+++    .+. .++.++.+|+.+.     +..++++|.|+
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~I~  126 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL-----PFPDNSFDAVT  126 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC-----CCCCCCccEEE
Confidence            57899999999999999999987 7899999986655554433    223 4699999999875     22467899998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +.+.-.+...        ...+++.+.+.|+|||.+++.
T Consensus       127 ~~~~l~~~~~--------~~~~l~~~~~~L~~gG~li~~  157 (239)
T PRK00216        127 IAFGLRNVPD--------IDKALREMYRVLKPGGRLVIL  157 (239)
T ss_pred             EecccccCCC--------HHHHHHHHHHhccCCcEEEEE
Confidence            7643222111        147899999999999998874

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.00  E-value=2.2e-09  Score=100.93  Aligned_cols=96  Identities=20%  Similarity=0.184  Sum_probs=71.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH-HhCC---------------CcEEEEEcChhhhhhhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ-LSGI---------------TNGYFIATNATSTFRSIV  293 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~-~~~l---------------~nv~f~~~Da~~l~~~~~  293 (416)
                      .+.+|||+|||.|..++.||++  +++|+|||++..|++++. ++++               .+|++.++|+.++...  
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~--  112 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA--  112 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc--
Confidence            3579999999999999999986  889999999999888753 3333               3689999999887211  


Q ss_pred             ccCCCceeEEE-----EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          294 ASYPGKLILVS-----IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       294 ~~~~~s~D~v~-----~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                        ..+.||.|+     +.+| |     .     ..+.+++.+.++|+|||++++
T Consensus       113 --~~~~fd~v~D~~~~~~l~-~-----~-----~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        113 --DLADVDAVYDRAALIALP-E-----E-----MRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             --cCCCeeEEEehHhHhhCC-H-----H-----HHHHHHHHHHHHcCCCCeEEE
Confidence              124678876     2222 1     1     125899999999999997555

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.99  E-value=2.7e-09  Score=99.38  Aligned_cols=97  Identities=12%  Similarity=0.098  Sum_probs=72.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      ...|||||||+|.++..|++..|..+++|+|++..+++.++++ .+++.+.++|+.+.    +  .+++||.|+++..-.
T Consensus        44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~-~~~~~~~~~d~~~~----~--~~~sfD~V~~~~vL~  116 (204)
T TIGR03587        44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY-LPNINIIQGSLFDP----F--KDNFFDLVLTKGVLI  116 (204)
T ss_pred             CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh-CCCCcEEEeeccCC----C--CCCCEEEEEECChhh
Confidence            5689999999999999999988889999999999988887653 45788888887652    2  578999998764332


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      +.. +     -....+++++.|++  ++.+++
T Consensus       117 hl~-p-----~~~~~~l~el~r~~--~~~v~i  140 (204)
T TIGR03587       117 HIN-P-----DNLPTAYRELYRCS--NRYILI  140 (204)
T ss_pred             hCC-H-----HHHHHHHHHHHhhc--CcEEEE
Confidence            211 1     01247888888887  345555

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.99  E-value=1.1e-08  Score=100.40  Aligned_cols=115  Identities=14%  Similarity=0.179  Sum_probs=81.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+|||+|.+++.+++. +..+++|+|++..++    +++..+++. ++.+...+....       .+++||.|+
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-------~~~~fDlVv  230 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-------IEGKADVIV  230 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-------cCCCceEEE
Confidence            3689999999999999888865 456899999765544    444445554 366666663221       357899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~  364 (416)
                      ++..-.           ....++.++.++|||||.++++.-.......+.+.++++ |..
T Consensus       231 an~~~~-----------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~  278 (288)
T TIGR00406       231 ANILAE-----------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTV  278 (288)
T ss_pred             EecCHH-----------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cce
Confidence            874311           114788999999999999999765555566677777765 543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.97  E-value=1.3e-09  Score=105.56  Aligned_cols=102  Identities=18%  Similarity=0.217  Sum_probs=74.1

Q ss_pred             CCeEEEEeccccHH----HHHHHHhCC-----CCeEEEEchHHHHHHHHHHhC--------C------------------
Q 014919          231 QPLVVDIGSGNGLF----LLGMARKRK-----DLNFLGLELVTHCRDSLQLSG--------I------------------  275 (416)
Q Consensus       231 ~~~vLDIGCG~G~~----~~~lA~~~p-----~~~~iGvD~~~~a~~~a~~~~--------l------------------  275 (416)
                      ..+|+|+|||+|.-    ++.+++..|     +.+++|+|++..+++.|++.-        +                  
T Consensus       100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v  179 (264)
T smart00138      100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV  179 (264)
T ss_pred             CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence            46899999999974    455566544     578999999888877765421        1                  


Q ss_pred             -----CcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          276 -----TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       276 -----~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                           .+|+|.+.|+.+.     +.+.++||.|++...-.++...      ....++++++++|+|||.|++.
T Consensus       180 ~~~ir~~V~F~~~dl~~~-----~~~~~~fD~I~crnvl~yf~~~------~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      180 KPELKERVRFAKHNLLAE-----SPPLGDFDLIFCRNVLIYFDEP------TQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             ChHHhCcCEEeeccCCCC-----CCccCCCCEEEechhHHhCCHH------HHHHHHHHHHHHhCCCeEEEEE
Confidence                 3689999999875     2246789999875433332211      1247899999999999999995

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PTZ00146 fibrillarin; Provisional

Probab=98.97  E-value=1.3e-08  Score=98.88  Aligned_cols=124  Identities=15%  Similarity=0.101  Sum_probs=85.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+.+|||+|||+|.++..+|... |.-.|+++|++.++.+.+.+  ...+||.++.+|+.......+  ..+++|+|++.
T Consensus       132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~--~~~~vDvV~~D  209 (293)
T PTZ00146        132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRM--LVPMVDVIFAD  209 (293)
T ss_pred             CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhc--ccCCCCEEEEe
Confidence            46799999999999999999986 45689999987654432211  123799999999865311111  24589999988


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe-----Cc----HHHHHHHHHHHHhCCCCce
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-----DI----EEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t-----D~----~~~~~~~~~~~~~~~~~~~  365 (416)
                      ...||.          ...++.++.+.|||||.|++..     |.    +..+.+-++.|++.+|...
T Consensus       210 va~pdq----------~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~  267 (293)
T PTZ00146        210 VAQPDQ----------ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPK  267 (293)
T ss_pred             CCCcch----------HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceE
Confidence            766651          1255678999999999999852     22    2223333477888887644

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.96  E-value=9.1e-09  Score=98.77  Aligned_cols=111  Identities=19%  Similarity=0.253  Sum_probs=77.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+|||+|..++.+++..+ .+++|+|++..+++.+    +.+++ .++.+..             .+.+||.|+
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~-------------~~~~fD~Vv  184 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQ-------------GDLKADVIV  184 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc-------------CCCCcCEEE
Confidence            468999999999999888776543 4699999866555544    33444 2222211             122699998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      ++....           ....+++++.++|||||.++++.-.....+.+.+.+.++++...
T Consensus       185 ani~~~-----------~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~  234 (250)
T PRK00517        185 ANILAN-----------PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLD  234 (250)
T ss_pred             EcCcHH-----------HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEE
Confidence            874211           12478899999999999999975555556677888888888654

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.94  E-value=3.1e-09  Score=111.08  Aligned_cols=103  Identities=18%  Similarity=0.241  Sum_probs=77.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH-h-CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL-S-GITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~-~-~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+..+||||||+|.++..+++..  .+++|+|++..+++.+.. . ..+|++++++|+... .  +++++++||.|++++
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~-~--~~~~~~~fD~I~~~~  111 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSP-D--LNISDGSVDLIFSNW  111 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccc-c--cCCCCCCEEEEehhh
Confidence            35789999999999999999874  489999988777765442 2 246899999999643 1  133578999999886


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +-.|....      ....++++++++|||||.+++.
T Consensus       112 ~l~~l~~~------~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        112 LLMYLSDK------EVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             hHHhCCHH------HHHHHHHHHHHhcCCCeEEEEE
Confidence            54443211      0148899999999999999884

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.94  E-value=1.3e-08  Score=92.71  Aligned_cols=153  Identities=13%  Similarity=0.171  Sum_probs=102.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+.+|||+|||.|.++..|.+. .++..+|+|+.......+.++|+   .++++|+.+-+.. |  ++++||.|.++-.-
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~rGv---~Viq~Dld~gL~~-f--~d~sFD~VIlsqtL   85 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVARGV---SVIQGDLDEGLAD-F--PDQSFDYVILSQTL   85 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHcCC---CEEECCHHHhHhh-C--CCCCccEEehHhHH
Confidence            3789999999999999888875 68999999998777777766675   5889999887552 3  69999999876211


Q ss_pred             CCCCCcchhhhhhh-HHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeecc-ccccccCCCCCCCCCCC
Q 014919          310 PDFNRPEHRWRMVQ-RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD-ECDTKTNQGGWLGENSF  387 (416)
Q Consensus       310 pw~k~~h~krRl~~-~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~  387 (416)
                      .      +   +.+ ...|+++.   +-|...+++..+-.|...-.+.+-. |.-.  ++.. ||       .|...++.
T Consensus        86 Q------~---~~~P~~vL~Eml---RVgr~~IVsFPNFg~W~~R~~l~~~-GrmP--vt~~lPy-------~WYdTPNi  143 (193)
T PF07021_consen   86 Q------A---VRRPDEVLEEML---RVGRRAIVSFPNFGHWRNRLQLLLR-GRMP--VTKALPY-------EWYDTPNI  143 (193)
T ss_pred             H------h---HhHHHHHHHHHH---HhcCeEEEEecChHHHHHHHHHHhc-CCCC--CCCCCCC-------cccCCCCc
Confidence            1      1   111 25566664   4477777877776666655554433 2211  1111 12       34444444


Q ss_pred             CCCC--HHHHHHHHCCCCeEEEEEEe
Q 014919          388 GVRS--DWEQHVIDRGAPMYRLMLSK  411 (416)
Q Consensus       388 ~~~T--~~E~k~~~~G~~i~~~~~~k  411 (416)
                      ...|  .||....+.|..|-+-.+..
T Consensus       144 h~~Ti~DFe~lc~~~~i~I~~~~~~~  169 (193)
T PF07021_consen  144 HLCTIKDFEDLCRELGIRIEERVFLD  169 (193)
T ss_pred             ccccHHHHHHHHHHCCCEEEEEEEEc
Confidence            4444  58999999999997766644

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.94  E-value=9e-10  Score=103.94  Aligned_cols=105  Identities=16%  Similarity=0.236  Sum_probs=75.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC----C--C----cEEEEEcChhhhhhhhhccCCCce
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG----I--T----NGYFIATNATSTFRSIVASYPGKL  300 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~----l--~----nv~f~~~Da~~l~~~~~~~~~~s~  300 (416)
                      +..|||+|||+|-.+..||+.  ..+|+|||++..+++-|+++.    .  .    .++|.+.|++.+        .+.|
T Consensus        90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--------~~~f  159 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--------TGKF  159 (282)
T ss_pred             CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--------cccc
Confidence            467999999999999999998  689999998766665554321    1  1    266777777765        3459


Q ss_pred             eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHH
Q 014919          301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRM  353 (416)
Q Consensus       301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~  353 (416)
                      |.|.+.-.--+.++        -..|++.+.+.|||||.+++.|-+....-+.
T Consensus       160 DaVvcsevleHV~d--------p~~~l~~l~~~lkP~G~lfittinrt~lS~~  204 (282)
T KOG1270|consen  160 DAVVCSEVLEHVKD--------PQEFLNCLSALLKPNGRLFITTINRTILSFA  204 (282)
T ss_pred             ceeeeHHHHHHHhC--------HHHHHHHHHHHhCCCCceEeeehhhhHHHhh
Confidence            99976511110011        1489999999999999999998776554433

>PLN02366 spermidine synthase

Probab=98.93  E-value=1.6e-08  Score=99.74  Aligned_cols=124  Identities=15%  Similarity=0.145  Sum_probs=88.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----h--CC--CcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----S--GI--TNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~--~l--~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      +..+||+||||.|..+..+++..+..+++.+|+.....+.+++    .  ++  ++++++.+|+...+.+.   ++++||
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~---~~~~yD  167 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA---PEGTYD  167 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc---cCCCCC
Confidence            4688999999999999999876334689999964443333322    1  22  47999999998875421   256899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhC
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  360 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~  360 (416)
                      .|++..++|+..    -..+..++|++.++++|+|||.+..+...    .+.+..+.+.+.+.
T Consensus       168 vIi~D~~dp~~~----~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~  226 (308)
T PLN02366        168 AIIVDSSDPVGP----AQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRET  226 (308)
T ss_pred             EEEEcCCCCCCc----hhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHH
Confidence            999988888742    22466789999999999999999876543    33344455555554

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=4.6e-09  Score=102.22  Aligned_cols=127  Identities=14%  Similarity=0.220  Sum_probs=91.2

Q ss_pred             ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCCCc-EEEEEcChhhhhhhhh
Q 014919          219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITN-GYFIATNATSTFRSIV  293 (416)
Q Consensus       219 ~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~  293 (416)
                      ++.|.+.+.. .+..+||+|||+|.+++..++.. ...++|+|+.    ..|+++++.++.++ ++....+....     
T Consensus       152 cL~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~-----  224 (300)
T COG2264         152 CLEALEKLLK-KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV-----  224 (300)
T ss_pred             HHHHHHHhhc-CCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh-----
Confidence            4556666655 58999999999999999988874 4579999974    44555666667654 22222232222     


Q ss_pred             ccCCCceeEEEEEC-CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          294 ASYPGKLILVSIQC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       294 ~~~~~s~D~v~~~f-pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      + ..+.||.|..|- .+|            ...+...+.+.|||||++.++---.++.+...+.+.+++|...
T Consensus       225 ~-~~~~~DvIVANILA~v------------l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~  284 (300)
T COG2264         225 P-ENGPFDVIVANILAEV------------LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVV  284 (300)
T ss_pred             c-ccCcccEEEehhhHHH------------HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEe
Confidence            1 236899999883 122            2378899999999999999987777787777888888888754

>TIGR03438 probable methyltransferase

Probab=98.93  E-value=6e-09  Score=102.73  Aligned_cols=109  Identities=11%  Similarity=0.130  Sum_probs=71.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHHHHHHHHh---CC--CcEEEEEcChhhhhhhhhc-cCCCceeEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQLS---GI--TNGYFIATNATSTFRSIVA-SYPGKLILV  303 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a~~~a~~~---~l--~nv~f~~~Da~~l~~~~~~-~~~~s~D~v  303 (416)
                      +..|||+|||+|..+..|+++.+ ..+|+|+|++..+++.+.++   ..  -++.++++|+.+.++ ..+ ........+
T Consensus        64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~~  142 (301)
T TIGR03438        64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLGF  142 (301)
T ss_pred             CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEEE
Confidence            57899999999999999999876 68999999877665544321   22  247789999976422 110 000122223


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      ++..+..++..      --...+|++++++|+|||.|++..|.
T Consensus       143 ~~gs~~~~~~~------~e~~~~L~~i~~~L~pgG~~lig~d~  179 (301)
T TIGR03438       143 FPGSTIGNFTP------EEAVAFLRRIRQLLGPGGGLLIGVDL  179 (301)
T ss_pred             EecccccCCCH------HHHHHHHHHHHHhcCCCCEEEEeccC
Confidence            22222222211      11248999999999999999987653

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.93  E-value=4.9e-09  Score=96.51  Aligned_cols=124  Identities=17%  Similarity=0.200  Sum_probs=89.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      ....|||||||+|-.+..|...  +..++|+|++..+++.+.+..++ -.++.+|+-+-    +|+.+++||.++..-.-
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-gdlil~DMG~G----lpfrpGtFDg~ISISAv  122 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-GDLILCDMGEG----LPFRPGTFDGVISISAV  122 (270)
T ss_pred             CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-cCeeeeecCCC----CCCCCCccceEEEeeee
Confidence            4689999999999999888765  68999999988887776654444 45777887654    36689999987543222


Q ss_pred             CCC-----CCcchhhhhhhHHHHHHHHhhccCCcEEEEEe--CcHHHHHHHHHHHHhCCC
Q 014919          310 PDF-----NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS--DIEEVMLRMKQQFLEYGK  362 (416)
Q Consensus       310 pw~-----k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t--D~~~~~~~~~~~~~~~~~  362 (416)
                      .|.     ...++++|+.  .|+..++.+|++|++..++.  .++...+-+.++....||
T Consensus       123 QWLcnA~~s~~~P~~Rl~--~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF  180 (270)
T KOG1541|consen  123 QWLCNADKSLHVPKKRLL--RFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF  180 (270)
T ss_pred             eeecccCccccChHHHHH--HHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence            332     2344577775  89999999999999988873  444555555555555564

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.93  E-value=5.8e-09  Score=106.12  Aligned_cols=100  Identities=17%  Similarity=0.101  Sum_probs=73.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC-CCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+.+|||||||+|.++..+|+++ +++++|+|++..+++.++++. -.++++..+|..++        +++||.|+....
T Consensus       167 ~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l--------~~~fD~Ivs~~~  237 (383)
T PRK11705        167 PGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL--------NGQFDRIVSVGM  237 (383)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc--------CCCCCEEEEeCc
Confidence            46799999999999999999875 679999998877766654432 12588888887654        468999976532


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      -.+....      ..+.+++++.++|||||.+++.+
T Consensus       238 ~ehvg~~------~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        238 FEHVGPK------NYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             hhhCChH------HHHHHHHHHHHHcCCCcEEEEEE
Confidence            2221111      12488999999999999999863

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.92  E-value=5.4e-08  Score=99.35  Aligned_cols=130  Identities=12%  Similarity=0.117  Sum_probs=85.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCC--cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~--nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      +.+|||+|||+|.+++.++.. ...+++++|++..+.    ++++.++++  +++++++|+.+++...- ...++||.|+
T Consensus       221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~-~~~~~fDlVi  298 (396)
T PRK15128        221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYR-DRGEKFDVIV  298 (396)
T ss_pred             CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHH-hcCCCCCEEE
Confidence            678999999999998876653 456999999765554    445556774  79999999988754321 1245899998


Q ss_pred             EECCCCCCCCcch-hhhh--hhHHHHHHHHhhccCCcEEEEEeCc-----HHHHHHHHHHHHhCCCCc
Q 014919          305 IQCPNPDFNRPEH-RWRM--VQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       305 ~~fpdpw~k~~h~-krRl--~~~~~l~~i~r~LkpgG~l~l~tD~-----~~~~~~~~~~~~~~~~~~  364 (416)
                      ++  .|.+..... ....  -...+++...++|+|||.|+..|-.     +.+.+-+.+...+.+...
T Consensus       299 lD--PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~  364 (396)
T PRK15128        299 MD--PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDV  364 (396)
T ss_pred             EC--CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeE
Confidence            86  333322211 1011  1346677889999999999876532     334443444555555543

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.91  E-value=1.2e-08  Score=105.52  Aligned_cols=114  Identities=16%  Similarity=0.292  Sum_probs=82.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..|||+|||+|..+..+|+.. +...++++|++.    .+.+++++.|++|++++++|+..+. ...+...++||.|+
T Consensus       252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~-~~~~~~~~~fD~Vl  330 (434)
T PRK14901        252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLL-ELKPQWRGYFDRIL  330 (434)
T ss_pred             CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcc-cccccccccCCEEE
Confidence            46899999999999999999875 456999999744    4555667788899999999998762 11111357899999


Q ss_pred             EECCC----CCCCCcchhhhh----------hhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPN----PDFNRPEHRWRM----------VQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpd----pw~k~~h~krRl----------~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +.-|-    .+.+.+..+++.          .+.++|+.+.+.|||||+|+.+|
T Consensus       331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst  384 (434)
T PRK14901        331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT  384 (434)
T ss_pred             EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            86331    111112112211          25788999999999999998875

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.91  E-value=1.4e-08  Score=80.92  Aligned_cols=99  Identities=16%  Similarity=0.163  Sum_probs=74.6

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      +++|+|||+|.++..+++ .+..+++++|....+...++    .....+++++..|..+...  .  ..+++|.++++.+
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP--E--ADESFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc--c--cCCceEEEEEccc
Confidence            479999999999999998 67889999998665554443    2345679999999987621  1  3568999998865


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ..++  .     .....+++.+.+.|+|||.+++.
T Consensus        76 ~~~~--~-----~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          76 LHHL--V-----EDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eeeh--h-----hHHHHHHHHHHHHcCCCCEEEEE
Confidence            4431  0     12358899999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.90  E-value=9.7e-09  Score=106.61  Aligned_cols=111  Identities=17%  Similarity=0.167  Sum_probs=80.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..|||+|||+|..+..+|+.. +...++|+|++..    +.+++++.+++|+.++++|+..+. ..+   .++||.|+
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~~---~~~fD~Vl  325 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH-EKF---AEKFDKIL  325 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc-chh---cccCCEEE
Confidence            35789999999999999999875 6789999997544    455566678889999999998762 222   36899998


Q ss_pred             EECCCC------------CCCCcchhhhh--hhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNP------------DFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdp------------w~k~~h~krRl--~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ++-|-.            |......-.++  .+..+|+.+.++|||||.++.+|
T Consensus       326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst  379 (444)
T PRK14902        326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST  379 (444)
T ss_pred             EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence            864311            11000000011  24578999999999999999775

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.90  E-value=5.1e-09  Score=95.57  Aligned_cols=106  Identities=11%  Similarity=0.193  Sum_probs=73.5

Q ss_pred             cCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          226 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       226 f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      +++..-..+||+|||+|.++..||.+.  -+++++|++..|++.+++  .+.+||+|++.|+.+..      +++.||+|
T Consensus        39 Lp~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~------P~~~FDLI  110 (201)
T PF05401_consen   39 LPRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW------PEGRFDLI  110 (201)
T ss_dssp             HTTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---------SS-EEEE
T ss_pred             cCccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC------CCCCeeEE
Confidence            344345789999999999999999985  489999999988888764  46789999999987652      47899999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ++.-.--+.....     ....++..+...|+|||.|++.+
T Consensus       111 V~SEVlYYL~~~~-----~L~~~l~~l~~~L~pgG~LV~g~  146 (201)
T PF05401_consen  111 VLSEVLYYLDDAE-----DLRAALDRLVAALAPGGHLVFGH  146 (201)
T ss_dssp             EEES-GGGSSSHH-----HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEehHhHcCCCHH-----HHHHHHHHHHHHhCCCCEEEEEE
Confidence            8652211111111     11367899999999999999975

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.89  E-value=6.1e-09  Score=95.02  Aligned_cols=101  Identities=14%  Similarity=0.099  Sum_probs=72.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEE-EEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~-f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ....+||||||||.....+- --|...++++|-+++    +.+.+.++...++. |+.++.+++ ++   ++++|+|.|.
T Consensus        76 ~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l-~~---l~d~s~DtVV  150 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL-PQ---LADGSYDTVV  150 (252)
T ss_pred             CccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC-cc---cccCCeeeEE
Confidence            34568999999998865433 237889999996444    44555556666766 999999998 32   3689999986


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .-|.-.-..+.        .+.|+++.|+|+|||+++|-
T Consensus       151 ~TlvLCSve~~--------~k~L~e~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  151 CTLVLCSVEDP--------VKQLNEVRRLLRPGGRIIFI  181 (252)
T ss_pred             EEEEEeccCCH--------HHHHHHHHHhcCCCcEEEEE
Confidence            54432211111        37899999999999999885

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.89  E-value=1.2e-08  Score=93.69  Aligned_cols=99  Identities=11%  Similarity=0.174  Sum_probs=70.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.++||||||.|+.++.||++  +..|+++|.+..++++    +++.+++ |+..+.|+.+.     . .++.+|.|+.
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~-----~-~~~~yD~I~s  100 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDF-----D-FPEEYDFIVS  100 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCB-----S--TTTEEEEEE
T ss_pred             CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhc-----c-ccCCcCEEEE
Confidence            3679999999999999999998  8899999987666554    3445665 99999998765     2 2568999875


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ...-.+.     + |-..+.+++.+...++|||++++.
T Consensus       101 t~v~~fL-----~-~~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen  101 TVVFMFL-----Q-RELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             ESSGGGS-------GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEeccC-----C-HHHHHHHHHHHHhhcCCcEEEEEE
Confidence            4221111     1 112368899999999999998874

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.89  E-value=1.7e-08  Score=97.76  Aligned_cols=111  Identities=14%  Similarity=0.138  Sum_probs=79.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..|||+|||+|..+..+|+..+ ...++++|++.    .+.+++++.++.|+.+++.|+..+ ..    ..++||.|+
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~-~~----~~~~fD~Vl  145 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVF-GA----AVPKFDAIL  145 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHh-hh----hccCCCEEE
Confidence            367899999999999999998764 46899999754    445566677888999999999875 21    245699998


Q ss_pred             EECCCC----CCCCcchh-----hhh-----hhHHHHHHHHhhccCCcEEEEEeC
Q 014919          305 IQCPNP----DFNRPEHR-----WRM-----VQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       305 ~~fpdp----w~k~~h~k-----rRl-----~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      +.-|-.    |.+.+..+     +.+     .+.++|+.+.+.|||||+|+.+|-
T Consensus       146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc  200 (264)
T TIGR00446       146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC  200 (264)
T ss_pred             EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            863211    11111111     111     356799999999999999998863

>TIGR00417 speE spermidine synthase

Probab=98.89  E-value=2.6e-08  Score=96.77  Aligned_cols=123  Identities=13%  Similarity=0.121  Sum_probs=87.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----h----CCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----S----GITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~----~l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      ++.+||+||||+|..+..+++..+..+++++|+.....+.+++    .    ..++++++.+|+.+.+..    .+++||
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~----~~~~yD  147 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD----TENTFD  147 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh----CCCCcc
Confidence            4569999999999999988877667789999975544443332    1    124689999999886542    257899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH----HHHHHHHHHHHhC
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEY  360 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~----~~~~~~~~~~~~~  360 (416)
                      +|++..++|+...    ..+...+|++.+.+.|+|||.+.+.+...    ..+..+.+.+.+.
T Consensus       148 vIi~D~~~~~~~~----~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~  206 (270)
T TIGR00417       148 VIIVDSTDPVGPA----ETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEA  206 (270)
T ss_pred             EEEEeCCCCCCcc----cchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHH
Confidence            9999877776322    23455799999999999999999876543    2333334445443

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.88  E-value=1.8e-08  Score=104.03  Aligned_cols=111  Identities=16%  Similarity=0.238  Sum_probs=78.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..|||+|||+|..+..+++..++.+++|+|++..    +.+++++.++. ++++++|+.++ ...+  .+++||.|++
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~-~~~~--~~~~fD~Vl~  319 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDP-AQWW--DGQPFDRILL  319 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccc-hhhc--ccCCCCEEEE
Confidence            467999999999999999999987789999997554    44445555664 78999999875 2222  3568999988


Q ss_pred             ECCCC----CCCCcchhh----------hhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          306 QCPNP----DFNRPEHRW----------RMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       306 ~fpdp----w~k~~h~kr----------Rl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +-|-.    +.+.+..++          .-.+..+|+.+.+.|||||.++++|
T Consensus       320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst  372 (427)
T PRK10901        320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT  372 (427)
T ss_pred             CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            64311    000000000          0124689999999999999999876

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.87  E-value=1.9e-08  Score=93.99  Aligned_cols=95  Identities=15%  Similarity=0.198  Sum_probs=71.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+++..  .+++++|.+.    .+.+++++.++.|+.+.++|+.+.+    + ..++||.|++
T Consensus        78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~I~~  150 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW----P-AYAPFDRILV  150 (212)
T ss_pred             CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC----C-cCCCcCEEEE
Confidence            36799999999999999888875  3799999644    4455555668889999999986531    1 2478999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      ..+-+              .+.+.+.+.|+|||.+++...
T Consensus       151 ~~~~~--------------~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        151 TAAAP--------------EIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             ccCch--------------hhhHHHHHhcCCCcEEEEEEc
Confidence            74322              234567889999999998654

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.85  E-value=2.9e-08  Score=94.42  Aligned_cols=101  Identities=17%  Similarity=0.213  Sum_probs=77.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHH----HHHHHHHHhCCC-cEEEEEcChhhhhhhhhcc-CCCceeEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLILV  303 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~----~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~-~~~s~D~v  303 (416)
                      ..+|||||||+|..++.+|+..| +.+++++|+..    .|++++++.++. +++++.+|+.+.++...+. +.++||.|
T Consensus        69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V  148 (234)
T PLN02781         69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA  148 (234)
T ss_pred             CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence            67899999999999999998755 68999999754    455556667775 6999999999876543221 24689999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      ++.   .+ | .      .+..+++.+.+.|+|||.+++
T Consensus       149 fiD---a~-k-~------~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        149 FVD---AD-K-P------NYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             EEC---CC-H-H------HHHHHHHHHHHhcCCCeEEEE
Confidence            874   32 1 1      124789999999999999886

>PRK06202 hypothetical protein; Provisional

Probab=98.85  E-value=1.2e-08  Score=96.53  Aligned_cols=100  Identities=14%  Similarity=0.102  Sum_probs=72.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHh----CCCCeEEEEchHHHHHHHHHHhC-CCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~----~p~~~~iGvD~~~~a~~~a~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ...+|||||||+|.++..|++.    .|+.+++|+|++..+++.+++.. ..|+.+.+.++..+     +..++++|.|+
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l-----~~~~~~fD~V~  134 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDEL-----VAEGERFDVVT  134 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccc-----cccCCCccEEE
Confidence            3578999999999999988864    45679999999888887765542 34678877777665     22467999999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      +++.-.|..+..      ...++++++|+++  |.+++
T Consensus       135 ~~~~lhh~~d~~------~~~~l~~~~r~~~--~~~~i  164 (232)
T PRK06202        135 SNHFLHHLDDAE------VVRLLADSAALAR--RLVLH  164 (232)
T ss_pred             ECCeeecCChHH------HHHHHHHHHHhcC--eeEEE
Confidence            886544332211      1378999999998  44444

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.84  E-value=3e-08  Score=98.41  Aligned_cols=97  Identities=16%  Similarity=0.169  Sum_probs=73.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC-CeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+|+..+. ..++|+|.+.    .|+++++..+.+|+.++++|+...+.     ...+||.|+
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~-----~~~~fD~Ii  154 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP-----EFAPYDVIF  154 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-----ccCCccEEE
Confidence            3679999999999999999998763 5799999754    45555566788899999999876521     235799998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      +.+.-+              .....+.+.|+|||.+++..+
T Consensus       155 ~~~g~~--------------~ip~~~~~~LkpgG~Lvv~~~  181 (322)
T PRK13943        155 VTVGVD--------------EVPETWFTQLKEGGRVIVPIN  181 (322)
T ss_pred             ECCchH--------------HhHHHHHHhcCCCCEEEEEeC
Confidence            863311              233456789999999988654

>PLN02672 methionine S-methyltransferase

Probab=98.83  E-value=9.2e-08  Score=107.32  Aligned_cols=128  Identities=16%  Similarity=0.153  Sum_probs=91.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCC----------------CcEEEEEcChhhhhh
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGI----------------TNGYFIATNATSTFR  290 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l----------------~nv~f~~~Da~~l~~  290 (416)
                      +..|||||||+|..++.+|+.+|..+++|+|++..|++.    ++.+++                ++++|+++|..+.+.
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            358999999999999999999999999999987665544    433322                369999999876521


Q ss_pred             hhhccCCCceeEEEEECCCCCCCCcch---------------------hhhh-----------hhHHHHHHHHhhccCCc
Q 014919          291 SIVASYPGKLILVSIQCPNPDFNRPEH---------------------RWRM-----------VQRSLVEAVSDLLVHDG  338 (416)
Q Consensus       291 ~~~~~~~~s~D~v~~~fpdpw~k~~h~---------------------krRl-----------~~~~~l~~i~r~LkpgG  338 (416)
                         + ....||+|..|  .|+......                     ..-+           +...++++..++|+|||
T Consensus       199 ---~-~~~~fDlIVSN--PPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG  272 (1082)
T PLN02672        199 ---D-NNIELDRIVGC--IPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMG  272 (1082)
T ss_pred             ---c-cCCceEEEEEC--CCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCC
Confidence               0 12369999988  344322110                     0011           12577888999999999


Q ss_pred             EEEEEeCcHHHHHHHH-HHHHhCCCCce
Q 014919          339 KVFLQSDIEEVMLRMK-QQFLEYGKGKL  365 (416)
Q Consensus       339 ~l~l~tD~~~~~~~~~-~~~~~~~~~~~  365 (416)
                      .+++.+... ..+.+. +.+++.+|...
T Consensus       273 ~l~lEiG~~-q~~~v~~~l~~~~gf~~~  299 (1082)
T PLN02672        273 IMIFNMGGR-PGQAVCERLFERRGFRIT  299 (1082)
T ss_pred             EEEEEECcc-HHHHHHHHHHHHCCCCee
Confidence            999998754 567777 58888887543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.82  E-value=3.5e-08  Score=101.94  Aligned_cols=112  Identities=14%  Similarity=0.139  Sum_probs=81.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..|||+|||+|..+..+|+.. +..+++++|++..    +.+++++.|++|++++++|+..+ +..   .+++||.|+
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l-~~~---~~~~fD~Vl  312 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERL-TEY---VQDTFDRIL  312 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhh-hhh---hhccCCEEE
Confidence            36789999999999999999875 5679999997544    44556667888999999999876 221   256899998


Q ss_pred             EECCCC----CCCCcchhhh--------h--hhHHHHHHHHhhccCCcEEEEEeC
Q 014919          305 IQCPNP----DFNRPEHRWR--------M--VQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       305 ~~fpdp----w~k~~h~krR--------l--~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      +.-|-.    +.+.+..+++        +  .+.++|..+.+.|||||.++++|-
T Consensus       313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  367 (431)
T PRK14903        313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC  367 (431)
T ss_pred             ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            863321    1111111111        1  356889999999999999999863

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.82  E-value=7.2e-08  Score=90.36  Aligned_cols=104  Identities=16%  Similarity=0.185  Sum_probs=74.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +..|||+|||+|.++..+++..  ..++|+|.+..+++    ++...+..++++.+.|+.++..   + .++++|.|+++
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~-~~~~~D~i~~~  119 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE---K-GAKSFDVVTCM  119 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc---C-CCCCccEEEeh
Confidence            5789999999999999998864  46999997654443    3334455579999999887621   1 24789999876


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  348 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~  348 (416)
                      ..-.+...        ...+++.+.++|+|||.+++.+....
T Consensus       120 ~~l~~~~~--------~~~~l~~~~~~L~~gG~l~i~~~~~~  153 (224)
T TIGR01983       120 EVLEHVPD--------PQAFIRACAQLLKPGGILFFSTINRT  153 (224)
T ss_pred             hHHHhCCC--------HHHHHHHHHHhcCCCcEEEEEecCCC
Confidence            32222111        13789999999999999998764433

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.81  E-value=5.2e-08  Score=101.14  Aligned_cols=122  Identities=20%  Similarity=0.224  Sum_probs=87.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..|||+|||+|.+++.+|+..  ..++|+|++..|+    ++++.++++|++|+++|+.+.+... ++.+++||.|++
T Consensus       297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~-~~~~~~fD~Vi~  373 (443)
T PRK13168        297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ-PWALGGFDKVLL  373 (443)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh-hhhcCCCCEEEE
Confidence            35799999999999999999885  6899999765554    4445567889999999998753211 123567999988


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  367 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~  367 (416)
                      +  .|+..         ..+.++.+.+ |+|++.+|++.+...+++.+. .|.+.++.+..+
T Consensus       374 d--PPr~g---------~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~-~L~~~gY~l~~i  422 (443)
T PRK13168        374 D--PPRAG---------AAEVMQALAK-LGPKRIVYVSCNPATLARDAG-VLVEAGYRLKRA  422 (443)
T ss_pred             C--cCCcC---------hHHHHHHHHh-cCCCeEEEEEeChHHhhccHH-HHhhCCcEEEEE
Confidence            5  23211         1245555555 699999999998888777655 455667765444

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.80  E-value=4.4e-08  Score=101.71  Aligned_cols=110  Identities=20%  Similarity=0.151  Sum_probs=79.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..|||+|||+|..+..+|+..+ ..+++|+|++..    +.+++++.|++|++++++|+..+.      ++++||.|+
T Consensus       250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~------~~~~fD~Vl  323 (445)
T PRK14904        250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS------PEEQPDAIL  323 (445)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc------cCCCCCEEE
Confidence            367999999999999999998653 568999997544    455566778889999999998762      356899998


Q ss_pred             EECCCC----CCCCcchhhh----------hhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          305 IQCPNP----DFNRPEHRWR----------MVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       305 ~~fpdp----w~k~~h~krR----------l~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      +.-|-.    |.+.+..+++          -.+..+|..+.+.|||||+++++|-
T Consensus       324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc  378 (445)
T PRK14904        324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC  378 (445)
T ss_pred             EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            752210    0011111111          1245789999999999999999873

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=3.2e-08  Score=91.39  Aligned_cols=94  Identities=19%  Similarity=0.278  Sum_probs=73.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..|||||||+|..+.-||+..-  +|+.+|.    ...|.++.+..|+.||.+.++|...-++     +...||.|++
T Consensus        72 ~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-----~~aPyD~I~V  144 (209)
T COG2518          72 PGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-----EEAPYDRIIV  144 (209)
T ss_pred             CCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-----CCCCcCEEEE
Confidence            478999999999999999999854  9999995    4567777888899999999999977532     3478999987


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .-.-|-              .=+.+.+.|||||++.+-.
T Consensus       145 taaa~~--------------vP~~Ll~QL~~gGrlv~Pv  169 (209)
T COG2518         145 TAAAPE--------------VPEALLDQLKPGGRLVIPV  169 (209)
T ss_pred             eeccCC--------------CCHHHHHhcccCCEEEEEE
Confidence            743221              1124567899999998843

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.76  E-value=8.2e-08  Score=89.43  Aligned_cols=102  Identities=20%  Similarity=0.238  Sum_probs=78.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEch----HHHHHHHHHHhCCC-cEEEEEcChhhhhhhhhcc-CCCceeE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEL----VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL  302 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~----~~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~-~~~s~D~  302 (416)
                      +...||||||++|..++.||+..| +.+++.+|.    ...|++.+++.|+. +|+++.+|+.+.++...+. ..+.||.
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~  124 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF  124 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence            368999999999999999999877 689999996    34566666677775 6999999999987654421 1358999


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      ||+-   .+      |+  -+..+++.+.+.|+|||.+++
T Consensus       125 VFiD---a~------K~--~y~~y~~~~~~ll~~ggvii~  153 (205)
T PF01596_consen  125 VFID---AD------KR--NYLEYFEKALPLLRPGGVIIA  153 (205)
T ss_dssp             EEEE---ST------GG--GHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEc---cc------cc--chhhHHHHHhhhccCCeEEEE
Confidence            9885   32      11  135889999999999999987

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.76  E-value=2.8e-08  Score=92.78  Aligned_cols=96  Identities=18%  Similarity=0.223  Sum_probs=71.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..||... +...+++||.    ...|.++.+..+..|+.++++|...-++     ....||.|+
T Consensus        72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-----~~apfD~I~  146 (209)
T PF01135_consen   72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP-----EEAPFDRII  146 (209)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-----GG-SEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-----cCCCcCEEE
Confidence            47899999999999999999874 4457999994    5667777778899999999999876532     246799999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +...-+              ..-..+.+.|++||++++-.
T Consensus       147 v~~a~~--------------~ip~~l~~qL~~gGrLV~pi  172 (209)
T PF01135_consen  147 VTAAVP--------------EIPEALLEQLKPGGRLVAPI  172 (209)
T ss_dssp             ESSBBS--------------S--HHHHHTEEEEEEEEEEE
T ss_pred             Eeeccc--------------hHHHHHHHhcCCCcEEEEEE
Confidence            875433              11235677899999999853

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PHA03412 putative methyltransferase; Provisional

Probab=98.74  E-value=6e-08  Score=91.51  Aligned_cols=100  Identities=15%  Similarity=0.138  Sum_probs=74.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhC---CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKR---KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~---p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      +.+|||+|||+|.+++.++++.   +..+++|+|+...|.+.++++ ..++.++++|+...     + .+++||.|+.| 
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n-~~~~~~~~~D~~~~-----~-~~~~FDlIIsN-  121 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI-VPEATWINADALTT-----E-FDTLFDMAISN-  121 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh-ccCCEEEEcchhcc-----c-ccCCccEEEEC-
Confidence            5799999999999999999874   467999999988888877643 46789999998764     2 25689999998 


Q ss_pred             CCCCCCC--cchhhh----hhhHHHHHHHHhhccCCcE
Q 014919          308 PNPDFNR--PEHRWR----MVQRSLVEAVSDLLVHDGK  339 (416)
Q Consensus       308 pdpw~k~--~h~krR----l~~~~~l~~i~r~LkpgG~  339 (416)
                       .|+.+.  .+.+.|    .+...+++...+++++|+.
T Consensus       122 -PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        122 -PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             -CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence             455422  221222    3456789999986666665

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.73  E-value=1.4e-08  Score=94.76  Aligned_cols=107  Identities=12%  Similarity=0.231  Sum_probs=76.3

Q ss_pred             eEEEEeccccHHHHHHHHhCCC--CeEEEEchHHHHHHHHHHhCC---CcEEEEEcChhhh-hhhhhccCCCceeEEEEE
Q 014919          233 LVVDIGSGNGLFLLGMARKRKD--LNFLGLELVTHCRDSLQLSGI---TNGYFIATNATST-FRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       233 ~vLDIGCG~G~~~~~lA~~~p~--~~~iGvD~~~~a~~~a~~~~l---~nv~f~~~Da~~l-~~~~~~~~~~s~D~v~~~  306 (416)
                      .|||||||.|.....+.+.+|+  ..+++.|.+.+|++..+++..   .++.-...|+..- +..  |...+++|.+++.
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~--~~~~~svD~it~I  151 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKE--PPEEGSVDIITLI  151 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccC--CCCcCccceEEEE
Confidence            7999999999999999998887  899999999999988765432   3344444454331 112  2257899998777


Q ss_pred             CCCCC-CCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919          307 CPNPD-FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  349 (416)
Q Consensus       307 fpdpw-~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~  349 (416)
                      |.-.- ++..       ....++.++++|||||.+++. |...|
T Consensus       152 FvLSAi~pek-------~~~a~~nl~~llKPGG~llfr-DYg~~  187 (264)
T KOG2361|consen  152 FVLSAIHPEK-------MQSVIKNLRTLLKPGGSLLFR-DYGRY  187 (264)
T ss_pred             EEEeccChHH-------HHHHHHHHHHHhCCCcEEEEe-ecccc
Confidence            64321 1111       137899999999999999995 54333

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.73  E-value=1.3e-07  Score=87.65  Aligned_cols=102  Identities=17%  Similarity=0.161  Sum_probs=71.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.++||+|||+|.+++.++.+. ..+++++|....+    .++++.++++|++++++|+.+.+..    ...++|.|+++
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~----~~~~fDlV~~D  128 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ----PGTPHNVVFVD  128 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh----cCCCceEEEEC
Confidence            5789999999999999755554 3689999975544    4455556788999999999876421    24579999886


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHh--hccCCcEEEEEeCc
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSDI  346 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r--~LkpgG~l~l~tD~  346 (416)
                        .|+.+.       ..+..++.+.+  +|+|++.+++.+..
T Consensus       129 --PPy~~g-------~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        129 --PPFRKG-------LLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             --CCCCCC-------hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence              343221       12355555554  48999999997643

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.72  E-value=1.5e-07  Score=88.11  Aligned_cols=99  Identities=21%  Similarity=0.259  Sum_probs=81.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEch----HHHHHHHHHHhCCCc-EEEEE-cChhhhhhhhhccCCCceeE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEL----VTHCRDSLQLSGITN-GYFIA-TNATSTFRSIVASYPGKLIL  302 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~----~~~a~~~a~~~~l~n-v~f~~-~Da~~l~~~~~~~~~~s~D~  302 (416)
                      ...++||||.+.|.+++.||...| +.+++.+|.    ...|+++.++.|+.+ +.++. +|+.+.+.. +  ..++||+
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~--~~~~fDl  135 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-L--LDGSFDL  135 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-c--cCCCccE
Confidence            468999999999999999999998 889999996    456777777888876 88888 599888654 2  4789999


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      ||+-   .+  +.      -++.+++.+.+.|+|||.+++
T Consensus       136 iFID---ad--K~------~yp~~le~~~~lLr~GGliv~  164 (219)
T COG4122         136 VFID---AD--KA------DYPEYLERALPLLRPGGLIVA  164 (219)
T ss_pred             EEEe---CC--hh------hCHHHHHHHHHHhCCCcEEEE
Confidence            9884   43  11      246999999999999999887

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.72  E-value=6.1e-08  Score=94.98  Aligned_cols=116  Identities=20%  Similarity=0.310  Sum_probs=79.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|||+|.+++..++.. ..+++|+|+    +..|+++++.+++.+ ++......+.       ..+.||.|+.
T Consensus       161 ~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~-------~~~~~dlvvA  231 (295)
T PF06325_consen  161 PGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDL-------VEGKFDLVVA  231 (295)
T ss_dssp             TTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCT-------CCS-EEEEEE
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEeccc-------ccccCCEEEE
Confidence            36899999999999999888764 458999996    566777777888775 3322222222       2588999999


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~  366 (416)
                      |---           -+...++..+.+.|+|||.|+++---....+.+.+.+++ ++....
T Consensus       232 NI~~-----------~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~  280 (295)
T PF06325_consen  232 NILA-----------DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVE  280 (295)
T ss_dssp             ES-H-----------HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEE
T ss_pred             CCCH-----------HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEE
Confidence            8310           012367888999999999999985444455667777766 776443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.72  E-value=2.2e-07  Score=96.06  Aligned_cols=121  Identities=19%  Similarity=0.286  Sum_probs=85.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +..+||+|||+|.+++.+|+..  ..++|+|++..    |.++++.++++|++|+++|+.+.++.. +..++++|.|++.
T Consensus       293 ~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~-~~~~~~~D~vi~d  369 (431)
T TIGR00479       293 EELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ-PWAGQIPDVLLLD  369 (431)
T ss_pred             CCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH-HhcCCCCCEEEEC
Confidence            5789999999999999999874  48999997544    445555678889999999998764432 1134679999874


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~  366 (416)
                         |- ...      ..+.+++.+.+ |+|++.+|++.+...+... ++.|.+.++....
T Consensus       370 ---PP-r~G------~~~~~l~~l~~-l~~~~ivyvsc~p~tlard-~~~l~~~gy~~~~  417 (431)
T TIGR00479       370 ---PP-RKG------CAAEVLRTIIE-LKPERIVYVSCNPATLARD-LEFLCKEGYGITW  417 (431)
T ss_pred             ---cC-CCC------CCHHHHHHHHh-cCCCEEEEEcCCHHHHHHH-HHHHHHCCeeEEE
Confidence               31 111      12467776664 8999999998876555444 4556666765443

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.72  E-value=2.7e-07  Score=84.99  Aligned_cols=153  Identities=11%  Similarity=0.063  Sum_probs=92.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      +..|||||||+|.++..+++. ...+++|+|++..+++.+..   .+++++++|+.+.++   ++++++||.|+++.+-.
T Consensus        14 ~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~---~~~~~~~~d~~~~l~---~~~~~sfD~Vi~~~~l~   86 (194)
T TIGR02081        14 GSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA---RGVNVIQGDLDEGLE---AFPDKSFDYVILSQTLQ   86 (194)
T ss_pred             CCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH---cCCeEEEEEhhhccc---ccCCCCcCEEEEhhHhH
Confidence            578999999999999999876 45688999998887777654   357889999875321   12467899999885433


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeeccccccccCCCCCCCCC--CCC
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN--SFG  388 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~  388 (416)
                      |..+        ...+++++.|.++   ..++...+..+.......+. .+...  .... +     ...|....  .+.
T Consensus        87 ~~~d--------~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~-~~~~~--~~~~-~-----~~~~~~~~~~~~~  146 (194)
T TIGR02081        87 ATRN--------PEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILT-KGRMP--VTGE-L-----PYDWYNTPNIHFC  146 (194)
T ss_pred             cCcC--------HHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHh-CCccc--cCCC-C-----CccccCCCCcccC
Confidence            3222        1367788777655   44454444444332222222 11110  0000 0     00122111  233


Q ss_pred             CCCHHHHHHHHCCCCeEEEEEE
Q 014919          389 VRSDWEQHVIDRGAPMYRLMLS  410 (416)
Q Consensus       389 ~~T~~E~k~~~~G~~i~~~~~~  410 (416)
                      ...++.+...+.|..+-...+.
T Consensus       147 s~~~~~~ll~~~Gf~v~~~~~~  168 (194)
T TIGR02081       147 TIADFEDLCGELNLRILDRAAF  168 (194)
T ss_pred             cHHHHHHHHHHCCCEEEEEEEe
Confidence            3456788889999988776665

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.72  E-value=1.5e-07  Score=102.98  Aligned_cols=129  Identities=11%  Similarity=0.180  Sum_probs=90.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCC--cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~--nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      +.+|||+|||+|.+++.+|+. ....+++||++..|++    +++.++++  +++|+++|+.+++..    ..++||.|+
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~----~~~~fDlIi  613 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE----AREQFDLIF  613 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH----cCCCcCEEE
Confidence            679999999999999999986 3457999998665554    44456765  799999999886532    146899999


Q ss_pred             EECCCCCCCCcc---hhh--hhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919          305 IQCPNPDFNRPE---HRW--RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  367 (416)
Q Consensus       305 ~~fpdpw~k~~h---~kr--Rl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~  367 (416)
                      ++  .|.+....   ...  .-.+.+++..+.++|+|||.+++.+....+ ....+.+.+.++....+
T Consensus       614 lD--PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~-~~~~~~~~~~g~~~~~i  678 (702)
T PRK11783        614 ID--PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGF-KMDEEGLAKLGLKAEEI  678 (702)
T ss_pred             EC--CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC-ChhHHHHHhCCCeEEEE
Confidence            86  23322111   000  011357888999999999999998776543 33466777777765444

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.70  E-value=8e-08  Score=90.13  Aligned_cols=98  Identities=13%  Similarity=0.120  Sum_probs=69.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ...++||||||+|.++..+++.  ...++|+|++..++..++    ..+. .|+.|.++|+.++        +++||.|+
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------~~~fD~ii  124 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL--------CGEFDIVV  124 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--------CCCcCEEE
Confidence            3688999999999999999986  458999998666554443    3343 4799999998765        26899997


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +.+.-.++...      ....+++++.+++++++.+.+.
T Consensus       125 ~~~~l~~~~~~------~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       125 CMDVLIHYPAS------DMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             EhhHHHhCCHH------HHHHHHHHHHHHhCCCEEEEEC
Confidence            65322111111      1136789999999987777663

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.69  E-value=2.5e-07  Score=91.86  Aligned_cols=115  Identities=18%  Similarity=0.202  Sum_probs=81.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||+|||+|.+++.+|+.  ..+++|+|++..+    .++++.++++|++|+++|+.++...    ..+.+|.|+++
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~----~~~~~D~Vv~d  247 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA----QGEVPDLVLVN  247 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh----cCCCCeEEEEC
Confidence            578999999999999999985  5799999975544    4455567888999999999886321    23579999886


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                        .|.  ..      ..+..++.+ ..++|++.+|++++...+.+.+.. +  .++...
T Consensus       248 --PPr--~G------~~~~~~~~l-~~~~~~~ivyvsc~p~t~~rd~~~-l--~~y~~~  292 (315)
T PRK03522        248 --PPR--RG------IGKELCDYL-SQMAPRFILYSSCNAQTMAKDLAH-L--PGYRIE  292 (315)
T ss_pred             --CCC--CC------ccHHHHHHH-HHcCCCeEEEEECCcccchhHHhh-c--cCcEEE
Confidence              221  11      112333333 447899999999888777766544 4  355543

>PLN02476 O-methyltransferase

Probab=98.69  E-value=2.3e-07  Score=90.03  Aligned_cols=102  Identities=13%  Similarity=0.170  Sum_probs=79.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchH----HHHHHHHHHhCCC-cEEEEEcChhhhhhhhhcc-CCCceeE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL  302 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~----~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~-~~~s~D~  302 (416)
                      ...+||||||++|.+++.+|+..| +..++.+|..    ..|++.+++.|+. +++++.+|+.+.++..... ..++||.
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~  197 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF  197 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence            368999999999999999998765 6689999964    4455666677886 7999999999887543210 1368999


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      ||+   |++ | +      -++.+++.+.+.|+|||.+.+
T Consensus       198 VFI---Da~-K-~------~Y~~y~e~~l~lL~~GGvIV~  226 (278)
T PLN02476        198 AFV---DAD-K-R------MYQDYFELLLQLVRVGGVIVM  226 (278)
T ss_pred             EEE---CCC-H-H------HHHHHHHHHHHhcCCCcEEEE
Confidence            977   554 1 1      135889999999999999887

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.66  E-value=2.3e-07  Score=90.10  Aligned_cols=98  Identities=16%  Similarity=0.211  Sum_probs=66.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH------HHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT------HCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLIL  302 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~------~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~  302 (416)
                      .+.+|||||||+|.++..|+.+.| ..++|+|-+.      .++++.  .+.++ +.++-..++++     |. .+.||.
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~--lg~~~~~~~lplgvE~L-----p~-~~~FDt  185 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHF--LGQDPPVFELPLGVEDL-----PN-LGAFDT  185 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHH--hCCCccEEEcCcchhhc-----cc-cCCcCE
Confidence            578999999999999999999865 4799999422      222222  23333 44443445554     32 578999


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      |++.-.- +| .+++      -..|.+++..|+|||.+++.|
T Consensus       186 VF~MGVL-YH-rr~P------l~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  186 VFSMGVL-YH-RRSP------LDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             EEEeeeh-hc-cCCH------HHHHHHHHHhhCCCCEEEEEE
Confidence            9865321 11 1111      278999999999999999876

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.66  E-value=4.8e-07  Score=91.90  Aligned_cols=117  Identities=18%  Similarity=0.190  Sum_probs=84.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ..++||+|||+|.+++.+|..  ..+++|+|++..|.    ++++.++++|++|+++|+.+++..    ...++|.|+++
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~----~~~~~D~vi~D  307 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA----QMSAPELVLVN  307 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh----cCCCCCEEEEC
Confidence            468999999999999999965  46899999755544    455566788999999999876421    12458998885


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  367 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~  367 (416)
                        .|. . .      ..+.+++.+. .++|++.+|++.+...+.+.+...   .++....+
T Consensus       308 --PPr-~-G------~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~  354 (374)
T TIGR02085       308 --PPR-R-G------IGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIERV  354 (374)
T ss_pred             --CCC-C-C------CcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEEEE
Confidence              232 1 1      2246666665 479999999999888887776654   56665444

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.64  E-value=2.6e-07  Score=95.48  Aligned_cols=112  Identities=13%  Similarity=0.245  Sum_probs=76.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..|||+|||+|..+..+|+..++.+++|+|++..    +.+++++.|++ ++.+..+|+... ....  ..++||.|+
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~-~~~~--~~~~fD~Vl  314 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP-SQWA--ENEQFDRIL  314 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc-cccc--cccccCEEE
Confidence            368999999999999999999888789999997544    44555566766 244477776543 1111  356899998


Q ss_pred             EECCCC----CCCCcchhh--------hh--hhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNP----DFNRPEHRW--------RM--VQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdp----w~k~~h~kr--------Rl--~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +.-|-.    +.+.+.-++        ++  .+.++|+++.+.|||||.+..+|
T Consensus       315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst  368 (426)
T TIGR00563       315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT  368 (426)
T ss_pred             EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            752210    111111111        11  25689999999999999999875

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=3.9e-07  Score=81.77  Aligned_cols=126  Identities=16%  Similarity=0.187  Sum_probs=93.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      +..+++|||||+|..+..|++. -|+..+.++|+...|.+-    ++.++ -++..+++|...-+      .++++|.+.
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-~~~~~V~tdl~~~l------~~~~VDvLv  115 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-VHIDVVRTDLLSGL------RNESVDVLV  115 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-CccceeehhHHhhh------ccCCccEEE
Confidence            3678999999999999999886 588999999987666543    33333 35788999987653      358999998


Q ss_pred             EECCCCCCC-Ccc--------------hhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919          305 IQCPNPDFN-RPE--------------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       305 ~~fpdpw~k-~~h--------------~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~  364 (416)
                      +|-  |+-. ...              .-.|-+..+++..+-..|.|.|.+|+.+-..+-.+++++.++..+|..
T Consensus       116 fNP--PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~  188 (209)
T KOG3191|consen  116 FNP--PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGV  188 (209)
T ss_pred             ECC--CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccce
Confidence            873  3211 111              111445568999999999999999998776667778888888887764

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.62  E-value=2.5e-07  Score=83.33  Aligned_cols=98  Identities=14%  Similarity=0.112  Sum_probs=68.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+..+||||||+|.++..++++  ..+++|+|+...+.+.++++  +.+|++++++|+.++     +..+.++|.|+.|.
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~-----~~~~~~~d~vi~n~   85 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKF-----DLPKLQPYKVVGNL   85 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcC-----CccccCCCEEEECC
Confidence            3578999999999999999988  56899999877666655432  246899999999886     22345689998874


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhh--ccCCcEEEEEeC
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDL--LVHDGKVFLQSD  345 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~--LkpgG~l~l~tD  345 (416)
                      |  +..         ....+..+.+.  +.++|.+.++.+
T Consensus        86 P--y~~---------~~~~i~~~l~~~~~~~~~~l~~q~e  114 (169)
T smart00650       86 P--YNI---------STPILFKLLEEPPAFRDAVLMVQKE  114 (169)
T ss_pred             C--ccc---------HHHHHHHHHhcCCCcceEEEEEEHH
Confidence            3  311         12333333322  458888888753

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.62  E-value=4.6e-07  Score=85.59  Aligned_cols=100  Identities=23%  Similarity=0.298  Sum_probs=72.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +..|||||||+|.++..+++.  ..+++|+|.+..+.+.++    ..+. ++.+..+|+..+..    ..++.||.|++.
T Consensus        49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~fD~Ii~~  121 (233)
T PRK05134         49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAA----EHPGQFDVVTCM  121 (233)
T ss_pred             CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhh----hcCCCccEEEEh
Confidence            578999999999999999886  568999997655544433    2333 68888888877621    135789999876


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      +.-.+...        ...+++.+.+.|+|||.+++.+.
T Consensus       122 ~~l~~~~~--------~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        122 EMLEHVPD--------PASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             hHhhccCC--------HHHHHHHHHHHcCCCcEEEEEec
Confidence            43222111        13789999999999999998753

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.61  E-value=3.5e-08  Score=92.23  Aligned_cols=99  Identities=17%  Similarity=0.198  Sum_probs=67.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhcc--CCCceeEEEEECC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS--YPGKLILVSIQCP  308 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~--~~~s~D~v~~~fp  308 (416)
                      ....+|+|||+|..++.+|..+.  +++|+|+++.+++.++++  +|++..+.-..-.-++.+++  .++|+|+|.+--.
T Consensus        34 h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~--~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa  109 (261)
T KOG3010|consen   34 HRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKH--PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA  109 (261)
T ss_pred             cceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcC--CCcccccCCccccccccccccCCCcceeeehhhhh
Confidence            34999999999988888888754  799999999888876543  23333222211100112222  3789999976545


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCc-EEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFL  342 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG-~l~l  342 (416)
                      -.|+.         .++|.++++|+||++| .+.+
T Consensus       110 ~HWFd---------le~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen  110 VHWFD---------LERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             HHhhc---------hHHHHHHHHHHcCCCCCEEEE
Confidence            56753         2589999999999877 5444

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.61  E-value=1.3e-07  Score=89.08  Aligned_cols=102  Identities=10%  Similarity=0.068  Sum_probs=74.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH-hC---------------CCcEEEEEcChhhhhhhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL-SG---------------ITNGYFIATNATSTFRSIV  293 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~-~~---------------l~nv~f~~~Da~~l~~~~~  293 (416)
                      .+.+||..|||.|.-+..||++  +.+|+|+|+++.|++.+.+ ++               -.+++++++|+.++ +. .
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l-~~-~  118 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL-PK-I  118 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC-Cc-c
Confidence            3579999999999999999998  7789999999999887633 21               23799999999887 20 0


Q ss_pred             ccCCCceeEEEEE---CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          294 ASYPGKLILVSIQ---CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       294 ~~~~~s~D~v~~~---fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +...+.||.|+-.   +.-|      ...   ..++.+.+.++|+|||.+++.+
T Consensus       119 ~~~~~~fD~VyDra~~~Alp------p~~---R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256        119 ANNLPVFDIWYDRGAYIALP------NDL---RTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             ccccCCcCeeeeehhHhcCC------HHH---HHHHHHHHHHHhCCCcEEEEEE
Confidence            0012578887522   1111      111   2488999999999999887754

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=1e-06  Score=79.87  Aligned_cols=114  Identities=16%  Similarity=0.213  Sum_probs=77.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ++..|+|+|||||.+++..+-..| ..++|+|+...    +.+++.+ ...+|.|+.+|+.++        .+.+|.+.+
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~--------~~~~dtvim  114 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDF--------RGKFDTVIM  114 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhc--------CCccceEEE
Confidence            577899999999999998887654 68999997444    4444444 556899999999886        567888888


Q ss_pred             ECCCCCCC-CcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919          306 QCPNPDFN-RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       306 ~fpdpw~k-~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~  364 (416)
                      |  .||=. .+|     -+..||....+.-    .+.-+.-+..+.+++....+..|...
T Consensus       115 N--PPFG~~~rh-----aDr~Fl~~Ale~s----~vVYsiH~a~~~~f~~~~~~~~G~~v  163 (198)
T COG2263         115 N--PPFGSQRRH-----ADRPFLLKALEIS----DVVYSIHKAGSRDFVEKFAADLGGTV  163 (198)
T ss_pred             C--CCCcccccc-----CCHHHHHHHHHhh----heEEEeeccccHHHHHHHHHhcCCeE
Confidence            8  56632 233     2346666555542    22333333445566777778887653

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.57  E-value=4.2e-07  Score=85.44  Aligned_cols=96  Identities=14%  Similarity=0.160  Sum_probs=63.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ....|||||||+|.++..+++..  ..++|+|++..+++.+    ...+. .++.|..+|...        .+++||.|+
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------~~~~fD~v~  132 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--------LLGRFDTVV  132 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--------ccCCcCEEE
Confidence            35789999999999999999874  4699999765554443    33444 479999999432        257899998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  341 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~  341 (416)
                      ++..-.++....      ....++.+.+.+++++.+.
T Consensus       133 ~~~~l~~~~~~~------~~~~l~~l~~~~~~~~~i~  163 (230)
T PRK07580        133 CLDVLIHYPQED------AARMLAHLASLTRGSLIFT  163 (230)
T ss_pred             EcchhhcCCHHH------HHHHHHHHHhhcCCeEEEE
Confidence            753321111111      1366777887765544443

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.56  E-value=1.2e-06  Score=86.79  Aligned_cols=67  Identities=19%  Similarity=0.144  Sum_probs=50.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----h-----CCCcEEEEEcChhhhhhhhhccCCCce
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----S-----GITNGYFIATNATSTFRSIVASYPGKL  300 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~-----~l~nv~f~~~Da~~l~~~~~~~~~~s~  300 (416)
                      .+.+|||||||+|.++..+++.  +.+++|+|++..+++.+++    .     +..++.|.+.|+.++        +++|
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--------~~~f  213 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--------SGKY  213 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--------CCCc
Confidence            3579999999999999999986  5799999987666554432    2     124688999887543        4689


Q ss_pred             eEEEEE
Q 014919          301 ILVSIQ  306 (416)
Q Consensus       301 D~v~~~  306 (416)
                      |.|++.
T Consensus       214 D~Vv~~  219 (315)
T PLN02585        214 DTVTCL  219 (315)
T ss_pred             CEEEEc
Confidence            988755

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.55  E-value=9.3e-07  Score=84.61  Aligned_cols=102  Identities=18%  Similarity=0.220  Sum_probs=78.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEch----HHHHHHHHHHhCC-CcEEEEEcChhhhhhhhhcc--CCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEL----VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVAS--YPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~----~~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~--~~~s~D  301 (416)
                      +..++||||+++|..++.||+.. |+.+++.+|.    ...|++..++.|+ .+|+++.+|+.+.++...+.  ..++||
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD  158 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD  158 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence            36899999999999999999876 4789999996    3445666667776 47999999999987654321  136899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      .||+   |.+      |+  -++.+++.+.+.|+|||.+++
T Consensus       159 ~iFi---Dad------K~--~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        159 FIFV---DAD------KD--NYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             EEEe---cCC------HH--HhHHHHHHHHHhcCCCeEEEE
Confidence            9987   444      11  135889999999999999886

>PLN02823 spermine synthase

Probab=98.54  E-value=1.7e-06  Score=86.48  Aligned_cols=125  Identities=15%  Similarity=0.136  Sum_probs=90.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--------CCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--------~l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      +...||.||+|.|..+..+.+..+..+++.||+.....+.+++.        .-++++++.+|+...+..    .++++|
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~----~~~~yD  178 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK----RDEKFD  178 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh----CCCCcc
Confidence            46789999999999999888876677899999765555444321        125799999999988642    357899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHH-HHHhhccCCcEEEEEeC------cHHHHHHHHHHHHhC
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVE-AVSDLLVHDGKVFLQSD------IEEVMLRMKQQFLEY  360 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~-~i~r~LkpgG~l~l~tD------~~~~~~~~~~~~~~~  360 (416)
                      +|++-.+||+....  -.++...+|++ .+.+.|+|||.+.+..-      ..+.+..+.+.+.+.
T Consensus       179 vIi~D~~dp~~~~~--~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~v  242 (336)
T PLN02823        179 VIIGDLADPVEGGP--CYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQV  242 (336)
T ss_pred             EEEecCCCccccCc--chhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHh
Confidence            99998888863211  12366779998 89999999999987632      233445555566554

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.52  E-value=3.2e-06  Score=83.85  Aligned_cols=130  Identities=13%  Similarity=0.143  Sum_probs=82.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHh-CCC-cEEEEE-cChhhhhhhhhccCCCceeE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLS-GIT-NGYFIA-TNATSTFRSIVASYPGKLIL  302 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~-~l~-nv~f~~-~Da~~l~~~~~~~~~~s~D~  302 (416)
                      ...++||||||+|.....|+.+.++++++|+|+...|    .++++.+ ++. ++++.+ .|...++.... ...+.||.
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~-~~~~~fDl  192 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII-HKNERFDA  192 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc-ccCCceEE
Confidence            3578999999999999999998899999999985544    4455556 565 577754 45554432211 13568999


Q ss_pred             EEEECCCCCCCCcch-------hhhhhh--------HHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          303 VSIQCPNPDFNRPEH-------RWRMVQ--------RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       303 v~~~fpdpw~k~~h~-------krRl~~--------~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      |++|  .|++.....       |.|-..        ..|=....+.+.+||.+.|..   .+.++..+...+.+|+..
T Consensus       193 ivcN--PPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~---~mi~eS~~~~~~~gwfts  265 (321)
T PRK11727        193 TLCN--PPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIK---RMIEESKAFAKQVLWFTS  265 (321)
T ss_pred             EEeC--CCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeeh---HhhHHHHHHHhhCcEEEE
Confidence            9998  666643221       111000        001112456677999988764   355556667777777643

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.50  E-value=1.3e-06  Score=83.06  Aligned_cols=125  Identities=12%  Similarity=0.114  Sum_probs=81.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ...+||+|||+|..++.++...|++.++++|.+..|++    ++++.++.+ +..++-+.+.-...-.+...+.+|.+..
T Consensus       149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs  228 (328)
T KOG2904|consen  149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS  228 (328)
T ss_pred             cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence            46899999999999999999999999999998776655    445556654 6665443332110001224588999988


Q ss_pred             ECCCCCCCCcch------------hhhh--------hhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHH
Q 014919          306 QCPNPDFNRPEH------------RWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF  357 (416)
Q Consensus       306 ~fpdpw~k~~h~------------krRl--------~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~  357 (416)
                      |  .|+.+....            |..+        ..-.++.-..|.|+|||.+.+.++...-...+...+
T Consensus       229 N--PPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~  298 (328)
T KOG2904|consen  229 N--PPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIW  298 (328)
T ss_pred             C--CCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHH
Confidence            8  555433211            1011        112567778999999999999987433333344433

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.49  E-value=5e-07  Score=90.10  Aligned_cols=115  Identities=19%  Similarity=0.201  Sum_probs=72.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-----------CC---CcEEEEEcChhhh-hhhhhc
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-----------GI---TNGYFIATNATST-FRSIVA  294 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-----------~l---~nv~f~~~Da~~l-~~~~~~  294 (416)
                      .+..|||||||.|.-+....... -..++|+|++..+++.|++.           ..   -...|+.+|.... +.+.++
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            46899999999999988888764 45899999754444333210           11   2467888887532 233343


Q ss_pred             cCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919          295 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  349 (416)
Q Consensus       295 ~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~  349 (416)
                      .....||+|.++|.-.+.=....+    -..+|+.+.+.|+|||.|+..|.+.+.
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~----ar~~l~Nvs~~Lk~GG~FIgT~~d~~~  191 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEK----ARQFLKNVSSLLKPGGYFIGTTPDSDE  191 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHH----HHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred             ccCCCcceeehHHHHHHhcCCHHH----HHHHHHHHHHhcCCCCEEEEEecCHHH
Confidence            123599999999876552222222    137999999999999999998765443

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.48  E-value=2.6e-06  Score=86.24  Aligned_cols=118  Identities=14%  Similarity=0.198  Sum_probs=81.2

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccC-----------
Q 014919          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASY-----------  296 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~-----------  296 (416)
                      ..+||++||+|.+++.+|+...  .++|+|++..|.    +++..++++|++|+++|+.++++......           
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~  285 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK  285 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence            4699999999999999998753  899999755544    45555788899999999988754321000           


Q ss_pred             CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919          297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       297 ~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~  366 (416)
                      ...+|.|++   ||-. ..      ..+..++.+.+   |++.+|++.|...+.+.+.. |.+ ++....
T Consensus       286 ~~~~D~v~l---DPPR-~G------~~~~~l~~l~~---~~~ivyvSC~p~tlarDl~~-L~~-gY~l~~  340 (362)
T PRK05031        286 SYNFSTIFV---DPPR-AG------LDDETLKLVQA---YERILYISCNPETLCENLET-LSQ-THKVER  340 (362)
T ss_pred             CCCCCEEEE---CCCC-CC------CcHHHHHHHHc---cCCEEEEEeCHHHHHHHHHH-HcC-CcEEEE
Confidence            124798877   5521 11      12355555554   79999999988777776654 433 665443

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.44  E-value=1.1e-06  Score=82.24  Aligned_cols=119  Identities=14%  Similarity=0.210  Sum_probs=74.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHH-----hCCC-------------------------
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQL-----SGIT-------------------------  276 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~-----~~l~-------------------------  276 (416)
                      ...+|||||-+|..++.+|+.+-...++|+|+.    ..|++.++.     ....                         
T Consensus        59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t  138 (288)
T KOG2899|consen   59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT  138 (288)
T ss_pred             cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence            578999999999999999999988899999974    444443220     0011                         


Q ss_pred             -----cEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe-CcHHHH
Q 014919          277 -----NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVM  350 (416)
Q Consensus       277 -----nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t-D~~~~~  350 (416)
                           |+.|...+..-.-++++......||.|++.-..-|..-.|+-.-+  ..|++.+++.|.|||+|++.- .|..|-
T Consensus       139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL--~~ff~kis~ll~pgGiLvvEPQpWksY~  216 (288)
T KOG2899|consen  139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGL--RRFFRKISSLLHPGGILVVEPQPWKSYK  216 (288)
T ss_pred             ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHH--HHHHHHHHHhhCcCcEEEEcCCchHHHH
Confidence                 333333322111011111134678988665445554333332222  389999999999999999973 466664


Q ss_pred             H
Q 014919          351 L  351 (416)
Q Consensus       351 ~  351 (416)
                      .
T Consensus       217 k  217 (288)
T KOG2899|consen  217 K  217 (288)
T ss_pred             H
Confidence            3

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.41  E-value=4.3e-06  Score=76.96  Aligned_cols=105  Identities=13%  Similarity=0.114  Sum_probs=70.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCC-cEEEEEcChhhhhhhhhccCCCc-eeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIVASYPGK-LILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s-~D~v  303 (416)
                      .+.++||++||+|.++++++.+.. ..++++|....|.    ++++.+++. +++++++|+...+....  ...+ +|.|
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~--~~~~~~dvv  125 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA--KKPTFDNVI  125 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh--ccCCCceEE
Confidence            367899999999999999999864 4899999755443    445556665 69999999977644221  1233 5665


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHH--hhccCCcEEEEEeCc
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDI  346 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~--r~LkpgG~l~l~tD~  346 (416)
                      ++   ||.+...     . .+..++.+.  .+|+++|.+++.++.
T Consensus       126 ~~---DPPy~~~-----~-~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       126 YL---DPPFFNG-----A-LQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             EE---CcCCCCC-----c-HHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            44   5544321     1 134444443  478999999887643

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.41  E-value=1.8e-06  Score=83.91  Aligned_cols=123  Identities=17%  Similarity=0.172  Sum_probs=82.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHH-hCC-----CcEEEEEcChhhh-hhhhhccCCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQL-SGI-----TNGYFIATNATST-FRSIVASYPG  298 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~-~~l-----~nv~f~~~Da~~l-~~~~~~~~~~  298 (416)
                      ....++|+|||.|.-++..-++. -..++|+|+.    ..|+++.+. .+.     -.+.|+.+|...- +.+.+++.+.
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             cccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            46789999999999988877653 3489999973    455554332 111     1378999987542 2344443455


Q ss_pred             ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHH
Q 014919          299 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF  357 (416)
Q Consensus       299 s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~  357 (416)
                      +||+|.++|.-.+.-....+-|    .+|..+.++|+|||.|+-.+.+.+..-+-++..
T Consensus       196 ~fDivScQF~~HYaFetee~ar----~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~  250 (389)
T KOG1975|consen  196 RFDIVSCQFAFHYAFETEESAR----IALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG  250 (389)
T ss_pred             CcceeeeeeeEeeeeccHHHHH----HHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence            5999988886554222223322    678999999999999998877666554444444

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.41  E-value=5e-06  Score=83.90  Aligned_cols=111  Identities=14%  Similarity=0.198  Sum_probs=78.2

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhc---c---C-----
Q 014919          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVA---S---Y-----  296 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~---~---~-----  296 (416)
                      ..+||++||+|.+++.||+...  .++|+|++..|    .++++.++++|++|+++|+.++++....   +   .     
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK  276 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence            4699999999999999998863  89999975544    4455567888999999999887542110   0   0     


Q ss_pred             CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHH
Q 014919          297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF  357 (416)
Q Consensus       297 ~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~  357 (416)
                      ...+|.|++   ||- ...      ..+.+++.+.+   |++.+|+++|...+++.+....
T Consensus       277 ~~~~d~v~l---DPP-R~G------~~~~~l~~l~~---~~~ivYvsC~p~tlaRDl~~L~  324 (353)
T TIGR02143       277 SYNCSTIFV---DPP-RAG------LDPDTCKLVQA---YERILYISCNPETLKANLEQLS  324 (353)
T ss_pred             cCCCCEEEE---CCC-CCC------CcHHHHHHHHc---CCcEEEEEcCHHHHHHHHHHHh
Confidence            113688877   552 222      12355665544   8999999999888888776543

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.39  E-value=1.4e-06  Score=82.94  Aligned_cols=96  Identities=16%  Similarity=0.201  Sum_probs=69.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      ....+||||+|.|.++..+++++|+.+++.+|+ ...++.+++  .++++++.+|..+-    +   +. .|++++...-
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--~~rv~~~~gd~f~~----~---P~-~D~~~l~~vL  168 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--ADRVEFVPGDFFDP----L---PV-ADVYLLRHVL  168 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--TTTEEEEES-TTTC----C---SS-ESEEEEESSG
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--ccccccccccHHhh----h---cc-ccceeeehhh
Confidence            457899999999999999999999999999996 222333333  67899999998632    2   33 9998876332


Q ss_pred             -CCCCCcchhhhhhhHHHHHHHHhhccCC--cEEEEE
Q 014919          310 -PDFNRPEHRWRMVQRSLVEAVSDLLVHD--GKVFLQ  343 (416)
Q Consensus       310 -pw~k~~h~krRl~~~~~l~~i~r~Lkpg--G~l~l~  343 (416)
                       .|.. .      ....+|+.+++.|+||  |+|++.
T Consensus       169 h~~~d-~------~~~~iL~~~~~al~pg~~g~llI~  198 (241)
T PF00891_consen  169 HDWSD-E------DCVKILRNAAAALKPGKDGRLLII  198 (241)
T ss_dssp             GGS-H-H------HHHHHHHHHHHHSEECTTEEEEEE
T ss_pred             hhcch-H------HHHHHHHHHHHHhCCCCCCeEEEE
Confidence             2321 1      1248899999999999  999885

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.39  E-value=3.3e-06  Score=77.06  Aligned_cols=111  Identities=20%  Similarity=0.273  Sum_probs=76.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCe---------EEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLN---------FLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASY  296 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~---------~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~  296 (416)
                      +..+||-=||+|.++++.|...++..         ++|.|+...    |.++++..++. .+.+.+.|+.++     ++.
T Consensus        29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l-----~~~  103 (179)
T PF01170_consen   29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL-----PLP  103 (179)
T ss_dssp             TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG-----GGT
T ss_pred             CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc-----ccc
Confidence            67899999999999999988877766         999997544    45555566765 489999999998     224


Q ss_pred             CCceeEEEEECCCCCCCCcch--hhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919          297 PGKLILVSIQCPNPDFNRPEH--RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  349 (416)
Q Consensus       297 ~~s~D~v~~~fpdpw~k~~h~--krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~  349 (416)
                      ++++|.|..+  .||=.....  ..+.+++.+++++.++|++ ..+++.+.+..+
T Consensus       104 ~~~~d~Ivtn--PPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~  155 (179)
T PF01170_consen  104 DGSVDAIVTN--PPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNREL  155 (179)
T ss_dssp             TSBSCEEEEE----STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCH
T ss_pred             cCCCCEEEEC--cchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHH
Confidence            7899999998  566332111  1134467899999999999 555555655543

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.38  E-value=6.7e-07  Score=84.13  Aligned_cols=99  Identities=17%  Similarity=0.219  Sum_probs=71.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH-HHhC---------------CCcEEEEEcChhhhhhhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL-QLSG---------------ITNGYFIATNATSTFRSIV  293 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a-~~~~---------------l~nv~f~~~Da~~l~~~~~  293 (416)
                      .+.+||..|||.|.-+..||++  +.+|+|+|++..|++.+ ++++               ..+|++.++|..++-+.  
T Consensus        37 ~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~--  112 (218)
T PF05724_consen   37 PGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE--  112 (218)
T ss_dssp             TSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS--
T ss_pred             CCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh--
Confidence            3568999999999999999997  67999999999999886 3322               13578999999887211  


Q ss_pred             ccCCCceeEEEEE---CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          294 ASYPGKLILVSIQ---CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       294 ~~~~~s~D~v~~~---fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                        ..++||.|+=.   +.-|      ...   .+++.+.++++|+|||.+++.
T Consensus       113 --~~g~fD~iyDr~~l~Alp------p~~---R~~Ya~~l~~ll~p~g~~lLi  154 (218)
T PF05724_consen  113 --DVGKFDLIYDRTFLCALP------PEM---RERYAQQLASLLKPGGRGLLI  154 (218)
T ss_dssp             --CHHSEEEEEECSSTTTS-------GGG---HHHHHHHHHHCEEEEEEEEEE
T ss_pred             --hcCCceEEEEecccccCC------HHH---HHHHHHHHHHHhCCCCcEEEE
Confidence              22579999632   1112      122   258999999999999995544

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.34  E-value=4.8e-06  Score=84.77  Aligned_cols=101  Identities=17%  Similarity=0.232  Sum_probs=77.8

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .++||++||+|.+++.+|...+...++++|++..|.    ++++.++++++.+.++|+..++..     ...||.|.+  
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-----~~~fD~V~l--  131 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-----ERKFDVVDI--  131 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-----cCCCCEEEE--
Confidence            589999999999999999887766899999865554    445567888899999999886421     356999987  


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE-eCcHHH
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEV  349 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~-tD~~~~  349 (416)
                       ||. ...        ..+++...+.+++||.++++ ||-..+
T Consensus       132 -DP~-Gs~--------~~~l~~al~~~~~~gilyvSAtD~~~L  164 (382)
T PRK04338        132 -DPF-GSP--------APFLDSAIRSVKRGGLLCVTATDTAPL  164 (382)
T ss_pred             -CCC-CCc--------HHHHHHHHHHhcCCCEEEEEecCchhh
Confidence             453 221        37888877889999999996 565544

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.29  E-value=2.8e-06  Score=83.67  Aligned_cols=100  Identities=15%  Similarity=0.186  Sum_probs=71.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ..+|||+|||+|.+++--|++. ..+++|||.   ...|.+.++.+++++ |+++++.+.++   .+  +.+.+|.|..-
T Consensus        61 dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi---~L--P~eKVDiIvSE  134 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI---EL--PVEKVDIIVSE  134 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE---ec--CccceeEEeeh
Confidence            6899999999999999888876 679999994   455666677888887 99999999987   23  35789998654


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  341 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~  341 (416)
                      +---|.  -+.   -+-...|-.--++|+|||.++
T Consensus       135 WMGy~L--l~E---sMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  135 WMGYFL--LYE---SMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hhhHHH--HHh---hhhhhhhhhhhhccCCCceEc
Confidence            211110  000   011244555678999999865

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.29  E-value=3.3e-06  Score=78.68  Aligned_cols=125  Identities=10%  Similarity=0.127  Sum_probs=89.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh----CC--CcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GI--TNGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~----~l--~nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||-+.|-|.+++..+++- ...++-+|.....++.+.-+    ++  .+++++.+|+.++.++ |  .+.+||.|
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~-~--~D~sfDaI  209 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD-F--DDESFDAI  209 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc-C--CccccceE
Confidence            47899999999999999988872 34899999544333332211    22  2689999999998653 3  68899988


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH-------HHHHHHHHHHHhCCCC
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-------EVMLRMKQQFLEYGKG  363 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~-------~~~~~~~~~~~~~~~~  363 (416)
                      . +  || |.-.+.- ++...+|.++++|+|||||.++--+-++       +......+-+++.||.
T Consensus       210 i-H--DP-PRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~  271 (287)
T COG2521         210 I-H--DP-PRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFE  271 (287)
T ss_pred             e-e--CC-Cccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCce
Confidence            4 4  44 2222322 6788999999999999999988755332       3456677778888876

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.28  E-value=3e-07  Score=85.31  Aligned_cols=100  Identities=14%  Similarity=0.175  Sum_probs=72.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      -.++||+|||||-+...|-...  .+.+|+|+|+++++++.+.++-. ++.++|+..+++.   ..++.+|.|..--.-|
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD-~L~~Aea~~Fl~~---~~~er~DLi~AaDVl~  199 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYD-TLYVAEAVLFLED---LTQERFDLIVAADVLP  199 (287)
T ss_pred             cceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchH-HHHHHHHHHHhhh---ccCCcccchhhhhHHH
Confidence            3689999999999988876653  36899999999999998877522 2345666655321   2467899987553333


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +....        +.++-.....|+|||.|.|++
T Consensus       200 YlG~L--------e~~~~~aa~~L~~gGlfaFSv  225 (287)
T COG4976         200 YLGAL--------EGLFAGAAGLLAPGGLFAFSV  225 (287)
T ss_pred             hhcch--------hhHHHHHHHhcCCCceEEEEe
Confidence            32221        478889999999999999975

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.26  E-value=3.6e-06  Score=78.06  Aligned_cols=95  Identities=22%  Similarity=0.339  Sum_probs=68.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ++..|+|+-||-|.|++.+|+..+...++++|+...|    .++++.+++++ +..+++|+.+++      ..+.+|.|.
T Consensus       101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~------~~~~~drvi  174 (200)
T PF02475_consen  101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL------PEGKFDRVI  174 (200)
T ss_dssp             TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---------TT-EEEEE
T ss_pred             cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc------CccccCEEE
Confidence            4789999999999999999997778899999986554    44556677765 899999998873      267899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      ++.|..    .        ..||..+.+++++||.+++
T Consensus       175 m~lp~~----~--------~~fl~~~~~~~~~~g~ihy  200 (200)
T PF02475_consen  175 MNLPES----S--------LEFLDAALSLLKEGGIIHY  200 (200)
T ss_dssp             E--TSS----G--------GGGHHHHHHHEEEEEEEEE
T ss_pred             ECChHH----H--------HHHHHHHHHHhcCCcEEEC
Confidence            985422    1        2789999999999999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.21  E-value=1.5e-05  Score=76.35  Aligned_cols=123  Identities=15%  Similarity=0.169  Sum_probs=89.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH------h--CCCcEEEEEcChhhhhhhhhccCCC-ce
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL------S--GITNGYFIATNATSTFRSIVASYPG-KL  300 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~------~--~l~nv~f~~~Da~~l~~~~~~~~~~-s~  300 (416)
                      +...||=||-|.|..+..+.+..+..+++.||+.+...+.+++      .  .-++++++.+|+..++.+.    .. .+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~----~~~~y  151 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET----QEEKY  151 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS----SST-E
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc----cCCcc
Confidence            5789999999999999999877667799999975544443332      1  1357999999999987542    34 89


Q ss_pred             eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC----cHHHHHHHHHHHHhC
Q 014919          301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD----IEEVMLRMKQQFLEY  360 (416)
Q Consensus       301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD----~~~~~~~~~~~~~~~  360 (416)
                      |.|++-.+||.....+    +...+|++.+.++|+|||.+.+...    ....+..+.+.+++.
T Consensus       152 DvIi~D~~dp~~~~~~----l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~  211 (246)
T PF01564_consen  152 DVIIVDLTDPDGPAPN----LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV  211 (246)
T ss_dssp             EEEEEESSSTTSCGGG----GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT
T ss_pred             cEEEEeCCCCCCCccc----ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh
Confidence            9999988887633222    6778999999999999999998742    244555566666665

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.21  E-value=2.9e-06  Score=75.85  Aligned_cols=73  Identities=10%  Similarity=0.023  Sum_probs=54.3

Q ss_pred             EEEchHHHHHHHHHHh-------CCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHH
Q 014919          258 LGLELVTHCRDSLQLS-------GITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV  330 (416)
Q Consensus       258 iGvD~~~~a~~~a~~~-------~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i  330 (416)
                      +|+|++..+++.++++       +..|++|+++|+.++     |+++++||.|++.|.-.|..++        ..+|+++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~fD~v~~~~~l~~~~d~--------~~~l~ei   67 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-----PFDDCEFDAVTMGYGLRNVVDR--------LRAMKEM   67 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-----CCCCCCeeEEEecchhhcCCCH--------HHHHHHH
Confidence            4899766655544321       135799999999887     4467899999988765554321        3889999


Q ss_pred             HhhccCCcEEEEE
Q 014919          331 SDLLVHDGKVFLQ  343 (416)
Q Consensus       331 ~r~LkpgG~l~l~  343 (416)
                      +|+|||||.|.+.
T Consensus        68 ~rvLkpGG~l~i~   80 (160)
T PLN02232         68 YRVLKPGSRVSIL   80 (160)
T ss_pred             HHHcCcCeEEEEE
Confidence            9999999999874

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.21  E-value=2.1e-05  Score=72.08  Aligned_cols=93  Identities=27%  Similarity=0.332  Sum_probs=71.3

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEchHHH---HHHH-HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH---CRDS-LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~---a~~~-a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .++|||+|.|.=++.||-.+|+.+++.+|.+.+   .++. +.+.+++|++++++.+++. .     ...+||.|++--.
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~-~-----~~~~fd~v~aRAv  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP-E-----YRESFDVVTARAV  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT-T-----TTT-EEEEEEESS
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc-c-----cCCCccEEEeehh
Confidence            799999999999999999999999999996432   2222 3467999999999999882 1     3689999998643


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      -|.            +.+++.+...|++||.+++-
T Consensus       125 ~~l------------~~l~~~~~~~l~~~G~~l~~  147 (184)
T PF02527_consen  125 APL------------DKLLELARPLLKPGGRLLAY  147 (184)
T ss_dssp             SSH------------HHHHHHHGGGEEEEEEEEEE
T ss_pred             cCH------------HHHHHHHHHhcCCCCEEEEE
Confidence            332            47889999999999988775

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=2.6e-05  Score=74.36  Aligned_cols=122  Identities=16%  Similarity=0.187  Sum_probs=97.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEch----HHHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEL----VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~----~~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|+|-|.|+|.++.++|+. .|.-+++-.|.    ..+|++..++.++ +|+.+.+-|+...   -|+..+..+|.|
T Consensus       105 PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~---GF~~ks~~aDaV  181 (314)
T KOG2915|consen  105 PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS---GFLIKSLKADAV  181 (314)
T ss_pred             CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC---CccccccccceE
Confidence            3789999999999999999997 47889999995    4567777778886 5899999998764   233236789999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCc-EEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQSDIEEVMLRMKQQFLEYGKGKLVL  367 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG-~l~l~tD~~~~~~~~~~~~~~~~~~~~~~  367 (416)
                      ++-.|.||             ..+-.++.+||.+| +|+.-+.+-+..+...+.+.+.+|-.+..
T Consensus       182 FLDlPaPw-------------~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~  233 (314)
T KOG2915|consen  182 FLDLPAPW-------------EAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIET  233 (314)
T ss_pred             EEcCCChh-------------hhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEE
Confidence            99999999             44555667899876 77766788788888999999999865544

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.15  E-value=6.8e-05  Score=76.19  Aligned_cols=113  Identities=16%  Similarity=0.143  Sum_probs=81.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----hCCC--cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGIT--NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~~l~--nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      +.+||++=|=||.+++..|... ..++++||++..+++++++    ++++  .+.|+++|+.+++...-. ....||+|+
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~-~g~~fDlIi  295 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER-RGEKFDLII  295 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh-cCCcccEEE
Confidence            7889999999999999988762 3399999998877776654    4653  489999999998764321 234899998


Q ss_pred             EECCCCCCCCcchhhhhh--hHHHHHHHHhhccCCcEEEEEeCc
Q 014919          305 IQCPNPDFNRPEHRWRMV--QRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~--~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      +- |...-+.+....+..  +..++..+.++|+|||.+++.|..
T Consensus       296 lD-PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~  338 (393)
T COG1092         296 LD-PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS  338 (393)
T ss_pred             EC-CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            73 222212222211111  368899999999999999998754

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.14  E-value=1.6e-05  Score=82.81  Aligned_cols=112  Identities=15%  Similarity=0.168  Sum_probs=82.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||++||.|.=+..+|+... ...++++|++    ....+++++.|+.|+.+...|+..+ ...+   ++.||.|.
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~-~~~~---~~~fD~IL  188 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF-GAAL---PETFDAIL  188 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh-hhhc---hhhcCeEE
Confidence            468999999999999999999764 4689999974    3445667788999999999999876 3333   46799998


Q ss_pred             EECCCC----CCCCcchhhh----------hhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          305 IQCPNP----DFNRPEHRWR----------MVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       305 ~~fpdp----w~k~~h~krR----------l~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      +--|=.    |.+++..+++          -.|.++|+...+.|||||+|+.+|-
T Consensus       189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC  243 (470)
T PRK11933        189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC  243 (470)
T ss_pred             EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence            753311    1111111111          1367899999999999999988863

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.14  E-value=2.9e-05  Score=74.03  Aligned_cols=122  Identities=18%  Similarity=0.147  Sum_probs=87.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      ...+||||.|.|..+..||..+.  ++++.|++..++.+.++.|.+   .+  |..++ .+    .+.+||+|.+.-.  
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~kg~~---vl--~~~~w-~~----~~~~fDvIscLNv--  160 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKKGFT---VL--DIDDW-QQ----TDFKFDVISCLNV--  160 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhCCCe---EE--ehhhh-hc----cCCceEEEeehhh--
Confidence            57899999999999999999886  599999999998888877753   22  33333 21    2568999976521  


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe---------------------------CcHHHHHHHHHHHHhCCCC
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------------------------DIEEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t---------------------------D~~~~~~~~~~~~~~~~~~  363 (416)
                        -+|+.+.    ..+|+.+++.|+|+|+++++.                           -+++....+.++|+..||.
T Consensus       161 --LDRc~~P----~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~  234 (265)
T PF05219_consen  161 --LDRCDRP----LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFE  234 (265)
T ss_pred             --hhccCCH----HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCE
Confidence              1222221    288999999999999998852                           1234555566778888887


Q ss_pred             ceeeecccc
Q 014919          364 KLVLVQDEC  372 (416)
Q Consensus       364 ~~~~~~d~~  372 (416)
                      ....+.-||
T Consensus       235 v~~~tr~PY  243 (265)
T PF05219_consen  235 VERWTRLPY  243 (265)
T ss_pred             EEEEeccCc
Confidence            766665566

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.13  E-value=8.3e-06  Score=75.37  Aligned_cols=110  Identities=18%  Similarity=0.164  Sum_probs=73.9

Q ss_pred             ccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEE-EEEcChhhhhhhhh---c
Q 014919          223 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGY-FIATNATSTFRSIV---A  294 (416)
Q Consensus       223 ~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~-f~~~Da~~l~~~~~---~  294 (416)
                      .+.++. .+..|||||||||.++..+|+++|+..+.-.|.....    ...+...+++|+. -+.-|+..-...+-   +
T Consensus        19 ~~~l~~-~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~   97 (204)
T PF06080_consen   19 KQYLPD-SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAP   97 (204)
T ss_pred             HHHhCc-cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccc
Confidence            444554 2336999999999999999999999999999964333    2344556777743 34555544310000   0


Q ss_pred             cCCCceeEEEEE---CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          295 SYPGKLILVSIQ---CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       295 ~~~~s~D~v~~~---fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      ...+++|.|+..   .--||.         ....+++...+.|++||.|++
T Consensus        98 ~~~~~~D~i~~~N~lHI~p~~---------~~~~lf~~a~~~L~~gG~L~~  139 (204)
T PF06080_consen   98 LSPESFDAIFCINMLHISPWS---------AVEGLFAGAARLLKPGGLLFL  139 (204)
T ss_pred             cCCCCcceeeehhHHHhcCHH---------HHHHHHHHHHHhCCCCCEEEE
Confidence            124689998643   123441         235899999999999999998

The function of this family is unknown.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.10  E-value=3.8e-05  Score=79.26  Aligned_cols=117  Identities=20%  Similarity=0.246  Sum_probs=86.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.++||+=||.|.|++.||++  ..+++|+|++    +.|.++|+.+++.|++|+.+++.++...+-  ....+|.|++ 
T Consensus       294 ~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~--~~~~~d~Vvv-  368 (432)
T COG2265         294 GERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW--EGYKPDVVVV-  368 (432)
T ss_pred             CCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc--ccCCCCEEEE-
Confidence            578999999999999999976  5689999974    456667778899999999999999854321  2357899977 


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCC
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~  363 (416)
                        ||- ...      ..+++++.+.+ ++|-..+|++.+...+++.+. .+...++.
T Consensus       369 --DPP-R~G------~~~~~lk~l~~-~~p~~IvYVSCNP~TlaRDl~-~L~~~gy~  414 (432)
T COG2265         369 --DPP-RAG------ADREVLKQLAK-LKPKRIVYVSCNPATLARDLA-ILASTGYE  414 (432)
T ss_pred             --CCC-CCC------CCHHHHHHHHh-cCCCcEEEEeCCHHHHHHHHH-HHHhCCeE
Confidence              552 222      12467766655 588899999988877777655 45555554

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.08  E-value=2.6e-05  Score=74.91  Aligned_cols=70  Identities=17%  Similarity=0.176  Sum_probs=52.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCcee---EEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLI---LVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D---~v~  304 (416)
                      ++..|||||||+|.++..|+++.+  .++++|....+.+.+++.  ..+|++++++|+..+     +  ..++|   .|+
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~-----~--~~~~d~~~~vv   99 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKV-----D--LPDFPKQLKVV   99 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcC-----C--hhHcCCcceEE
Confidence            468999999999999999999975  599999876666655432  246899999999876     1  11345   777


Q ss_pred             EECC
Q 014919          305 IQCP  308 (416)
Q Consensus       305 ~~fp  308 (416)
                      .|.|
T Consensus       100 sNlP  103 (253)
T TIGR00755       100 SNLP  103 (253)
T ss_pred             EcCC
Confidence            7743

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.06  E-value=1e-05  Score=78.68  Aligned_cols=71  Identities=15%  Similarity=0.093  Sum_probs=53.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC-CCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+..|||||||+|.++..++++.+  +++|+|++..+.+.++++- .+|++++++|+.++ +  +  ++-..+.|+.|.
T Consensus        42 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~-~--~--~~~~~~~vv~Nl  113 (272)
T PRK00274         42 PGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV-D--L--SELQPLKVVANL  113 (272)
T ss_pred             CcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcC-C--H--HHcCcceEEEeC
Confidence            357899999999999999999965  8999998777766654321 26899999999876 1  1  121147788883

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.06  E-value=3e-05  Score=70.32  Aligned_cols=105  Identities=17%  Similarity=0.243  Sum_probs=64.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhC---CCcEEEEEcChhhhh-hhhhccCCCceeE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSG---ITNGYFIATNATSTF-RSIVASYPGKLIL  302 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~---l~nv~f~~~Da~~l~-~~~~~~~~~s~D~  302 (416)
                      .+.+|||||||+|..++.+|+..+..+++..|.   +.....+++.++   ..++++...|=.+-. ...+  ...+||.
T Consensus        45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~~D~  122 (173)
T PF10294_consen   45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHSFDV  122 (173)
T ss_dssp             TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SSBSE
T ss_pred             CCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccc--ccccCCE
Confidence            468999999999999999999877889999996   334444555444   345777666532211 2222  3568999


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      |+..  |-.+...      ..+.+++.+.+.|+|+|.+++..
T Consensus       123 Ilas--Dv~Y~~~------~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen  123 ILAS--DVLYDEE------LFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             EEEE--S--S-GG------GHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             EEEe--cccchHH------HHHHHHHHHHHHhCCCCEEEEEe
Confidence            9865  6554322      23699999999999999988764

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.05  E-value=1.3e-05  Score=77.28  Aligned_cols=70  Identities=20%  Similarity=0.221  Sum_probs=54.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+..|||||||+|.++..++++  ..+++|+|+...+.+.+++.  ..+|+.++++|+.++     +  ...+|.|+.|.
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~-----~--~~~~d~Vv~Nl   99 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKV-----D--LPEFNKVVSNL   99 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccC-----C--chhceEEEEcC
Confidence            3688999999999999999998  35899999876665554432  246899999999876     2  22479998884


Q ss_pred             C
Q 014919          308 P  308 (416)
Q Consensus       308 p  308 (416)
                      |
T Consensus       100 P  100 (258)
T PRK14896        100 P  100 (258)
T ss_pred             C
Confidence            4

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.04  E-value=6.5e-05  Score=73.27  Aligned_cols=115  Identities=15%  Similarity=0.140  Sum_probs=88.6

Q ss_pred             CCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-------C-CCcEEEEEcChhhhhhhhhccCCCc
Q 014919          228 DPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-------G-ITNGYFIATNATSTFRSIVASYPGK  299 (416)
Q Consensus       228 ~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-------~-l~nv~f~~~Da~~l~~~~~~~~~~s  299 (416)
                      +++..+||-||-|.|..+..+.+..+..+++.||+....++.+++.       . -+++.++.+|+.+++.+    ....
T Consensus        74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~----~~~~  149 (282)
T COG0421          74 HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD----CEEK  149 (282)
T ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh----CCCc
Confidence            3345699999999999999999998889999999755555444321       1 26799999999998753    2348


Q ss_pred             eeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHH
Q 014919          300 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM  350 (416)
Q Consensus       300 ~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~  350 (416)
                      ||+|++...|| ..   +-..+++..|++.+++.|+++|.+..++.+..+.
T Consensus       150 fDvIi~D~tdp-~g---p~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~  196 (282)
T COG0421         150 FDVIIVDSTDP-VG---PAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ  196 (282)
T ss_pred             CCEEEEcCCCC-CC---cccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence            99999987777 21   2234778899999999999999999986654443

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.03  E-value=3.2e-05  Score=73.19  Aligned_cols=147  Identities=12%  Similarity=0.010  Sum_probs=81.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcE-EEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv-~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+..+||+|||+|.++..++++ +..+++|+|++...+....+.. .++ .+...|+..+..+.++..-..+|+.++.. 
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~-~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~-  151 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQD-ERVKVLERTNIRYVTPADIFPDFATFDVSFISL-  151 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcC-CCeeEeecCCcccCCHhHcCCCceeeeEEEeeh-
Confidence            4679999999999999999987 4568999998764444311111 222 23444444321111111123677766652 


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeeccccccccCCCCCCCCCCCC
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFG  388 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  388 (416)
                                     ...+..+.+.|+| |.+.+-.  .+.||--.+.....|.    +. |   .+.|         ..
T Consensus       152 ---------------~~~l~~i~~~l~~-~~~~~L~--KPqFE~~~~~~~~~gi----v~-~---~~~~---------~~  196 (228)
T TIGR00478       152 ---------------ISILPELDLLLNP-NDLTLLF--KPQFEAGREKKNKKGV----VR-D---KEAI---------AL  196 (228)
T ss_pred             ---------------HhHHHHHHHHhCc-CeEEEEc--ChHhhhcHhhcCcCCe----ec-C---HHHH---------HH
Confidence                           1357888999999 7766532  4455544333322221    10 1   0011         13


Q ss_pred             CCCHHHHHHHHCCCCeEEEEEEeCCC
Q 014919          389 VRSDWEQHVIDRGAPMYRLMLSKPSC  414 (416)
Q Consensus       389 ~~T~~E~k~~~~G~~i~~~~~~k~~~  414 (416)
                      ...+....+.+.|..+..+....+++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~s~i~G  222 (228)
T TIGR00478       197 ALHKVIDKGESPDFQEKKIIFSLTKG  222 (228)
T ss_pred             HHHHHHHHHHcCCCeEeeEEECCCCC
Confidence            34455555666677776666655543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.99  E-value=1.2e-05  Score=74.23  Aligned_cols=108  Identities=9%  Similarity=0.103  Sum_probs=63.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      ..-+|.|+|||.+.++..+..   ..+|.-.|+++.           |=.++.+|+..+     |++++++|.+.+..+.
T Consensus        72 ~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-----------n~~Vtacdia~v-----PL~~~svDv~VfcLSL  132 (219)
T PF05148_consen   72 KSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-----------NPRVTACDIANV-----PLEDESVDVAVFCLSL  132 (219)
T ss_dssp             TTS-EEEES-TT-HHHHH--S------EEEEESS-S-----------STTEEES-TTS------S--TT-EEEEEEES--
T ss_pred             CCEEEEECCCchHHHHHhccc---CceEEEeeccCC-----------CCCEEEecCccC-----cCCCCceeEEEEEhhh
Confidence            467999999999988755432   357999998652           223567999877     6689999998765332


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH--HHHHHHHHHHhCCCCce
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE--VMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~--~~~~~~~~~~~~~~~~~  365 (416)
                        +...       ...|+.|..|+|||||.|.++--...  -.+...+.++..||...
T Consensus       133 --MGTn-------~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~  181 (219)
T PF05148_consen  133 --MGTN-------WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLK  181 (219)
T ss_dssp             ---SS--------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEE
T ss_pred             --hCCC-------cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEE
Confidence              1111       25999999999999999999621100  12334566778887654

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.96  E-value=7.6e-05  Score=75.74  Aligned_cols=102  Identities=14%  Similarity=0.225  Sum_probs=79.5

Q ss_pred             CeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          232 PLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ..+||+-||+|..++.++.+.+ -..++++|++..|.    ++++.++++|+.+++.|+..++..    ....||.|.+ 
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~----~~~~fDvIdl-  120 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY----RNRKFHVIDI-  120 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH----hCCCCCEEEe-
Confidence            5899999999999999999854 35899999866554    445556778899999999988542    1357998876 


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE-eCcHHH
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEV  349 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~-tD~~~~  349 (416)
                        ||. ...        ..|++.+.+.++++|.+++. ||...+
T Consensus       121 --DPf-Gs~--------~~fld~al~~~~~~glL~vTaTD~~~L  153 (374)
T TIGR00308       121 --DPF-GTP--------APFVDSAIQASAERGLLLVTATDTSAL  153 (374)
T ss_pred             --CCC-CCc--------HHHHHHHHHhcccCCEEEEEecccHHh
Confidence              673 221        27999999999999999986 786654

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.93  E-value=3.6e-05  Score=75.69  Aligned_cols=72  Identities=18%  Similarity=0.170  Sum_probs=54.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhC-CCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..|||||||+|.++..+++..  .+++|+|+...+.+.+    ...+ .+|++++++|+...     +  ...+|.|+
T Consensus        36 ~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~-----~--~~~~d~Vv  106 (294)
T PTZ00338         36 PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT-----E--FPYFDVCV  106 (294)
T ss_pred             CcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh-----c--ccccCEEE
Confidence            36789999999999999999874  5799999765554443    3334 46899999999875     1  23679999


Q ss_pred             EECCCC
Q 014919          305 IQCPNP  310 (416)
Q Consensus       305 ~~fpdp  310 (416)
                      .|.|.-
T Consensus       107 aNlPY~  112 (294)
T PTZ00338        107 ANVPYQ  112 (294)
T ss_pred             ecCCcc
Confidence            885543

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.93  E-value=2.4e-05  Score=70.08  Aligned_cols=73  Identities=18%  Similarity=0.241  Sum_probs=50.5

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCc-eeEEEEE
Q 014919          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGK-LILVSIQ  306 (416)
Q Consensus       233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s-~D~v~~~  306 (416)
                      +|+|+.||.|..++.+|+.++  ++++||+    +..|+.+++-.|. +||.|+++|..+++...   .... +|.|++.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~---~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRL---KSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhc---cccccccEEEEC
Confidence            689999999999999999964  7999996    4456667777785 58999999999985432   1222 7999876


Q ss_pred             CCCCCC
Q 014919          307 CPNPDF  312 (416)
Q Consensus       307 fpdpw~  312 (416)
                        .||=
T Consensus        77 --PPWG   80 (163)
T PF09445_consen   77 --PPWG   80 (163)
T ss_dssp             ----BS
T ss_pred             --CCCC
Confidence              7884

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.90  E-value=4.2e-05  Score=72.45  Aligned_cols=102  Identities=13%  Similarity=0.234  Sum_probs=72.0

Q ss_pred             CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       229 ~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      +...+|-|+|||-+.++.  ..   ..+|+.+|++.           .|=+++.||+..+     |++++++|++++..+
T Consensus       179 ~~~~vIaD~GCGEakiA~--~~---~~kV~SfDL~a-----------~~~~V~~cDm~~v-----Pl~d~svDvaV~CLS  237 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS--SE---RHKVHSFDLVA-----------VNERVIACDMRNV-----PLEDESVDVAVFCLS  237 (325)
T ss_pred             cCceEEEecccchhhhhh--cc---ccceeeeeeec-----------CCCceeeccccCC-----cCccCcccEEEeeHh
Confidence            357899999999998765  22   23688888754           2446778999887     668999998764322


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe------CcHHHHHHHHHHHHhCCCCc
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS------DIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t------D~~~~~~~~~~~~~~~~~~~  364 (416)
                        .+...       ...|+.+++|+|+|||.++++-      |...    ..+.+...||..
T Consensus       238 --LMgtn-------~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~----f~r~l~~lGF~~  286 (325)
T KOG3045|consen  238 --LMGTN-------LADFIKEANRILKPGGLLYIAEVKSRFSDVKG----FVRALTKLGFDV  286 (325)
T ss_pred             --hhccc-------HHHHHHHHHHHhccCceEEEEehhhhcccHHH----HHHHHHHcCCee
Confidence              11111       1489999999999999999972      3322    455677788764

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.87  E-value=1.7e-05  Score=65.52  Aligned_cols=96  Identities=17%  Similarity=0.227  Sum_probs=43.3

Q ss_pred             EEEeccccHHHHHHHHhCCCC---eEEEEchHH---HHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          235 VDIGSGNGLFLLGMARKRKDL---NFLGLELVT---HCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       235 LDIGCG~G~~~~~lA~~~p~~---~~iGvD~~~---~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      |||||..|.++..+++..+..   +++++|...   .+.+.+++.++ .++++++++..+.++...   .+++|.+++--
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~---~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP---DGPIDLIFIDG   77 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHH---H--EEEEEEES
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcC---CCCEEEEEECC
Confidence            799999999999999876544   699999755   45555554554 479999999988765432   57899998852


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                             .|....  ....++.+.+.|+|||.+++
T Consensus        78 -------~H~~~~--~~~dl~~~~~~l~~ggviv~  103 (106)
T PF13578_consen   78 -------DHSYEA--VLRDLENALPRLAPGGVIVF  103 (106)
T ss_dssp             ----------HHH--HHHHHHHHGGGEEEEEEEEE
T ss_pred             -------CCCHHH--HHHHHHHHHHHcCCCeEEEE
Confidence                   222111  13568889999999999887

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.85  E-value=9.4e-06  Score=83.51  Aligned_cols=97  Identities=14%  Similarity=0.106  Sum_probs=63.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch-----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~-----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .-.++||||||+|.|+..|.++    +++.+-+     -+...+-+.+.|++-+.-+.+      ...+|+++++||+|+
T Consensus       117 ~iR~~LDvGcG~aSF~a~l~~r----~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~------s~rLPfp~~~fDmvH  186 (506)
T PF03141_consen  117 GIRTALDVGCGVASFGAYLLER----NVTTMSFAPNDEHEAQVQFALERGVPAMIGVLG------SQRLPFPSNAFDMVH  186 (506)
T ss_pred             ceEEEEeccceeehhHHHHhhC----CceEEEcccccCCchhhhhhhhcCcchhhhhhc------cccccCCccchhhhh
Confidence            3578999999999999999987    3444332     111223334456542211111      223477899999996


Q ss_pred             E-ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 I-QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~-~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      + .+-.||....        .-+|-++.|+|+|||+|+++.
T Consensus       187 csrc~i~W~~~~--------g~~l~evdRvLRpGGyfv~S~  219 (506)
T PF03141_consen  187 CSRCLIPWHPND--------GFLLFEVDRVLRPGGYFVLSG  219 (506)
T ss_pred             cccccccchhcc--------cceeehhhhhhccCceEEecC
Confidence            4 3567886432        247889999999999999863

; GO: 0008168 methyltransferase activity

>PRK04148 hypothetical protein; Provisional

Probab=97.85  E-value=8.7e-05  Score=64.28  Aligned_cols=72  Identities=10%  Similarity=0.091  Sum_probs=54.6

Q ss_pred             CCCeEEEEeccccH-HHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGNGL-FLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~-~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      ++.++||||||.|. .+..|++.  +.+++|+|+++.+.+.+++.+   +.++++|..+--.++    -..+|.|+..-|
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~---~~~v~dDlf~p~~~~----y~~a~liysirp   86 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLG---LNAFVDDLFNPNLEI----YKNAKLIYSIRP   86 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhC---CeEEECcCCCCCHHH----HhcCCEEEEeCC
Confidence            45789999999996 77788865  679999999999888887654   578899987641111    256899998755


Q ss_pred             CC
Q 014919          309 NP  310 (416)
Q Consensus       309 dp  310 (416)
                      .|
T Consensus        87 p~   88 (134)
T PRK04148         87 PR   88 (134)
T ss_pred             CH
Confidence            44

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.82  E-value=0.00026  Score=66.23  Aligned_cols=102  Identities=18%  Similarity=0.256  Sum_probs=78.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHH----HHHHHHhCCC-cEEEEEcChhhhhhhhhcc-CCCceeE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHC----RDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL  302 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a----~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~-~~~s~D~  302 (416)
                      +..++||||.=||..++..|...| +.+++++|+...+    .+..+..|.. .|.++++.+.+.+++.++- +.++||.
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf  152 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF  152 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence            368999999999999999999887 5699999985443    3334455654 6999999999988776631 3578998


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      +|+   |.|      |++  +-.+++++.+.||+||.+++
T Consensus       153 aFv---Dad------K~n--Y~~y~e~~l~Llr~GGvi~~  181 (237)
T KOG1663|consen  153 AFV---DAD------KDN--YSNYYERLLRLLRVGGVIVV  181 (237)
T ss_pred             EEE---ccc------hHH--HHHHHHHHHhhcccccEEEE
Confidence            866   666      322  23788999999999999987

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.82  E-value=0.00012  Score=72.65  Aligned_cols=119  Identities=17%  Similarity=0.256  Sum_probs=84.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEc-ChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~-Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      +..+||==||||.++++..-.  +++++|.|+...+.+.    .+..++++..+... |+..+     |+++.++|.|..
T Consensus       198 G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l-----pl~~~~vdaIat  270 (347)
T COG1041         198 GELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL-----PLRDNSVDAIAT  270 (347)
T ss_pred             CCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC-----CCCCCccceEEe
Confidence            679999999999999998876  7899999976555444    44456777766666 99987     445678999976


Q ss_pred             ECCCCCCCC-cchhh-h--hhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919          306 QCPNPDFNR-PEHRW-R--MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       306 ~fpdpw~k~-~h~kr-R--l~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~  364 (416)
                         ||.... ...|. +  -+..++|+.++++||+||++.|.++..+     .+.+...++..
T Consensus       271 ---DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~-----~~~~~~~~f~v  325 (347)
T COG1041         271 ---DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDP-----RHELEELGFKV  325 (347)
T ss_pred             ---cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcc-----hhhHhhcCceE
Confidence               443322 11121 1  1246899999999999999999988322     23345556653

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=8.1e-05  Score=76.71  Aligned_cols=115  Identities=21%  Similarity=0.318  Sum_probs=77.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ....+||+-||||.+.+.+|+.  -..++|||+++.    |.++|+.+|++|.+|+++.++++++..+...-++=+.+.+
T Consensus       383 ~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~i  460 (534)
T KOG2187|consen  383 ADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAI  460 (534)
T ss_pred             CCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEE
Confidence            4589999999999999999987  458999998554    5666778899999999998888765444211123333444


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHH
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ  355 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~  355 (416)
                      .  ||--+-.|       ..+++.+.+.-.+-=.+|++......+....+
T Consensus       461 i--DPpR~Glh-------~~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~  501 (534)
T KOG2187|consen  461 I--DPPRKGLH-------MKVIKALRAYKNPRRLVYVSCNPHTAARNVID  501 (534)
T ss_pred             E--CCCccccc-------HHHHHHHHhccCccceEEEEcCHHHhhhhHHH
Confidence            3  66333333       36777776665577777776654433333333

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.77  E-value=0.00021  Score=69.78  Aligned_cols=112  Identities=16%  Similarity=0.155  Sum_probs=74.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCC--CcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI--TNGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l--~nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||+=|=||.|++..|.. ....++.||++..|++.++    .+++  ++++|++.|+.+.+...-  ..+.||.|
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~--~~~~fD~I  199 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK--KGGRFDLI  199 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH--HTT-EEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh--cCCCCCEE
Confidence            4789999999999999987654 3458999998777666554    4565  479999999988765421  25689999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      ++. |..+.+.+..-.| -+.+++..+.++|+|||.|++.|..
T Consensus       200 IlD-PPsF~k~~~~~~~-~y~~L~~~a~~ll~~gG~l~~~scs  240 (286)
T PF10672_consen  200 ILD-PPSFAKSKFDLER-DYKKLLRRAMKLLKPGGLLLTCSCS  240 (286)
T ss_dssp             EE---SSEESSTCEHHH-HHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred             EEC-CCCCCCCHHHHHH-HHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            884 3233222221112 2357889999999999999887654

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.75  E-value=0.00017  Score=65.99  Aligned_cols=140  Identities=16%  Similarity=0.188  Sum_probs=83.1

Q ss_pred             CceEeeeecc-cCCCCcccccccCccccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----
Q 014919          194 GSAVWEFLKG-RMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----  268 (416)
Q Consensus       194 GGa~le~l~g-r~lPg~~aL~~~~p~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----  268 (416)
                      .|--+....+ ..+|..+.+.+..   -+|.... ...+.++||+=||+|..+++...+. ...++.||.+..|.+    
T Consensus         9 kgr~l~~p~~~~~RPT~drvreal---FniL~~~-~~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~   83 (183)
T PF03602_consen    9 KGRKLKTPKGDNTRPTTDRVREAL---FNILQPR-NLEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKK   83 (183)
T ss_dssp             TT-EEE-TT--TS-SSSHHHHHHH---HHHHHCH--HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHH
T ss_pred             CCCEecCCCCCCcCCCcHHHHHHH---HHHhccc-ccCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHH
Confidence            3455555554 4566554444332   1232221 0147999999999999999877764 458999997655544    


Q ss_pred             HHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHH--hhccCCcEEEEEeC
Q 014919          269 SLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSD  345 (416)
Q Consensus       269 ~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~--r~LkpgG~l~l~tD  345 (416)
                      +++..+..+ ++.++.|+...+.... .....||.|++-  .|+ ....     ..+..++.+.  .+|+++|.+++.++
T Consensus        84 N~~~l~~~~~~~v~~~d~~~~l~~~~-~~~~~fDiIflD--PPY-~~~~-----~~~~~l~~l~~~~~l~~~~~ii~E~~  154 (183)
T PF03602_consen   84 NLEKLGLEDKIRVIKGDAFKFLLKLA-KKGEKFDIIFLD--PPY-AKGL-----YYEELLELLAENNLLNEDGLIIIEHS  154 (183)
T ss_dssp             HHHHHT-GGGEEEEESSHHHHHHHHH-HCTS-EEEEEE----ST-TSCH-----HHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             HHHHhCCCcceeeeccCHHHHHHhhc-ccCCCceEEEEC--CCc-ccch-----HHHHHHHHHHHCCCCCCCEEEEEEec
Confidence            444556665 9999999887654331 136789999874  333 2221     1246677776  89999999999876


Q ss_pred             cH
Q 014919          346 IE  347 (416)
Q Consensus       346 ~~  347 (416)
                      ..
T Consensus       155 ~~  156 (183)
T PF03602_consen  155 KK  156 (183)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.74  E-value=0.00046  Score=66.81  Aligned_cols=119  Identities=16%  Similarity=0.214  Sum_probs=83.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC--CeEEEEchH----HHHHHHHHHhCCCcE-EEEEcChhhhhhhhhccCCCceeE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLELV----THCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLIL  302 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~--~~~iGvD~~----~~a~~~a~~~~l~nv-~f~~~Da~~l~~~~~~~~~~s~D~  302 (416)
                      ..-+||||.||.|...+.....+|.  ..+.-.|.+    +...+.+++.|++++ +|.++|+.+. ..+-. .....++
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~-~~l~~-l~p~P~l  212 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR-DSLAA-LDPAPTL  212 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH-hHhhc-cCCCCCE
Confidence            4578999999999999999999987  788888963    455666778899997 9999999775 22211 1122344


Q ss_pred             EEE-----ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe-CcHHHHHHHHHHHHhC
Q 014919          303 VSI-----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLEY  360 (416)
Q Consensus       303 v~~-----~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t-D~~~~~~~~~~~~~~~  360 (416)
                      +++     .|||-         .++ ...|.-++++|.|||+++... +|.+..+.+...+..|
T Consensus       213 ~iVsGL~ElF~Dn---------~lv-~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsH  266 (311)
T PF12147_consen  213 AIVSGLYELFPDN---------DLV-RRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSH  266 (311)
T ss_pred             EEEecchhhCCcH---------HHH-HHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcc
Confidence            433     35542         122 356889999999999998842 4666666556666554

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.69  E-value=0.00032  Score=70.75  Aligned_cols=117  Identities=23%  Similarity=0.328  Sum_probs=71.5

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhh-----h------ccC
Q 014919          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSI-----V------ASY  296 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~-----~------~~~  296 (416)
                      ..+||+=||.|.+++.||+..  .+++|||++.    .|.++++.++++|++|+++++.++...+     |      ...
T Consensus       198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~  275 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK  275 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred             CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence            379999999999999999885  4899999754    4566677789999999999987652211     0      001


Q ss_pred             CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       297 ~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      ...+|.|.+   ||- ...      ..+.+++.+.   ++.=.+|+++|...+.+.+.. |.+ ++.+.
T Consensus       276 ~~~~d~vil---DPP-R~G------~~~~~~~~~~---~~~~ivYvSCnP~tlaRDl~~-L~~-~y~~~  329 (352)
T PF05958_consen  276 SFKFDAVIL---DPP-RAG------LDEKVIELIK---KLKRIVYVSCNPATLARDLKI-LKE-GYKLE  329 (352)
T ss_dssp             CTTESEEEE-------TT-------SCHHHHHHHH---HSSEEEEEES-HHHHHHHHHH-HHC-CEEEE
T ss_pred             hcCCCEEEE---cCC-CCC------chHHHHHHHh---cCCeEEEEECCHHHHHHHHHH-Hhh-cCEEE
Confidence            235788866   552 222      1235555543   345688999988888777654 543 65543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.68  E-value=0.00045  Score=69.79  Aligned_cols=113  Identities=16%  Similarity=0.237  Sum_probs=80.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC--CeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~--~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||+..+.|.=+..+|+..++  ..++++|++    ....+++++.|+.|+..++.|+..+.....  ..+.||.|
T Consensus       156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~--~~~~fD~i  233 (355)
T COG0144         156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP--GGEKFDRI  233 (355)
T ss_pred             CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc--ccCcCcEE
Confidence            4789999999999999999998764  567999974    345566778899999999999887632211  12359999


Q ss_pred             EEECCCC----CCCCcchhh----------hhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          304 SIQCPNP----DFNRPEHRW----------RMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       304 ~~~fpdp----w~k~~h~kr----------Rl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .+--|=.    +.+++..|+          --+|.++|+...+.|||||.|..+|
T Consensus       234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST  288 (355)
T COG0144         234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST  288 (355)
T ss_pred             EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            7642100    111111111          1247899999999999999999986

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.68  E-value=0.00028  Score=77.45  Aligned_cols=116  Identities=16%  Similarity=0.099  Sum_probs=74.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhC------------------------------------------CCCeEEEEchHH----
Q 014919          231 QPLVVDIGSGNGLFLLGMARKR------------------------------------------KDLNFLGLELVT----  264 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~------------------------------------------p~~~~iGvD~~~----  264 (416)
                      +..++|-.||+|.++++.|...                                          +...++|+|+..    
T Consensus       191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~  270 (702)
T PRK11783        191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ  270 (702)
T ss_pred             CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence            5789999999999999987631                                          123699999754    


Q ss_pred             HHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhh--hhhhHHHHHHHHhhccCCcEEE
Q 014919          265 HCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRW--RMVQRSLVEAVSDLLVHDGKVF  341 (416)
Q Consensus       265 ~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~kr--Rl~~~~~l~~i~r~LkpgG~l~  341 (416)
                      .|.+++..+|+.+ +.|.++|+.++ ..  +...+++|.|..|  .||-.....+.  +.++..+. +..+.+.+|+.++
T Consensus       271 ~A~~N~~~~g~~~~i~~~~~D~~~~-~~--~~~~~~~d~IvtN--PPYg~r~~~~~~l~~lY~~lg-~~lk~~~~g~~~~  344 (702)
T PRK11783        271 AARKNARRAGVAELITFEVKDVADL-KN--PLPKGPTGLVISN--PPYGERLGEEPALIALYSQLG-RRLKQQFGGWNAA  344 (702)
T ss_pred             HHHHHHHHcCCCcceEEEeCChhhc-cc--ccccCCCCEEEEC--CCCcCccCchHHHHHHHHHHH-HHHHHhCCCCeEE
Confidence            4555566678764 89999999886 21  1123579999998  56533211111  11222332 2333344999998


Q ss_pred             EEeCcHHHHHH
Q 014919          342 LQSDIEEVMLR  352 (416)
Q Consensus       342 l~tD~~~~~~~  352 (416)
                      +.|.+..+...
T Consensus       345 llt~~~~l~~~  355 (702)
T PRK11783        345 LFSSSPELLSC  355 (702)
T ss_pred             EEeCCHHHHHH
Confidence            88877765443

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.63  E-value=8.9e-05  Score=67.31  Aligned_cols=107  Identities=18%  Similarity=0.187  Sum_probs=65.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhh-----hhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST-----FRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l-----~~~~~~~~~~s~D~v  303 (416)
                      +...+||+||++|.++..+.++. +...++|+|+...       ...+++.++++|..+.     +...++.....+|+|
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv   95 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLV   95 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEE
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-------ccccceeeeecccchhhHHHhhhhhccccccCccee
Confidence            35899999999999999999986 6789999997432       2346788888887542     122221112689999


Q ss_pred             EEECCCCCCCCc---c-hhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          304 SIQCPNPDFNRP---E-HRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       304 ~~~fpdpw~k~~---h-~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +.--..+....+   + ...++. ...+..+.+.|+|||.+++++
T Consensus        96 ~~D~~~~~~g~~~~d~~~~~~l~-~~~l~~a~~~L~~gG~~v~K~  139 (181)
T PF01728_consen   96 LSDMAPNVSGDRNIDEFISIRLI-LSQLLLALELLKPGGTFVIKV  139 (181)
T ss_dssp             EE-------SSHHSSHHHHHHHH-HHHHHHHHHHHCTTEEEEEEE
T ss_pred             ccccccCCCCchhhHHHHHHHHH-HHHHHHHHhhhcCCCEEEEEe
Confidence            865321211110   1 111222 244556778899999988864

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.63  E-value=0.0005  Score=64.38  Aligned_cols=115  Identities=22%  Similarity=0.182  Sum_probs=79.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH-H---HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCc-eeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT-H---CRDSLQLSGITNGYFIATNATSTFRSIVASYPGK-LILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~-~---a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s-~D~v~~  305 (416)
                      ..+++|||+|.|.=++.||-.+|+.+|+-+|... +   -..-.++.+++|++++++.++++-.      ... +|.|++
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~------~~~~~D~vts  141 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ------EKKQYDVVTS  141 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc------ccccCcEEEe
Confidence            4789999999999999999999999999999532 1   1222346799999999999998721      123 999986


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE--eCcHHHHHHHHHHHHhCCCC
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ--SDIEEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~--tD~~~~~~~~~~~~~~~~~~  363 (416)
                      --.-+.            ..+++-+...||+||.+..-  .-..++..+........++.
T Consensus       142 RAva~L------------~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~  189 (215)
T COG0357         142 RAVASL------------NVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQ  189 (215)
T ss_pred             ehccch------------HHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCc
Confidence            522111            36788889999999886421  22233444444444444444

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.63  E-value=0.00019  Score=74.53  Aligned_cols=99  Identities=14%  Similarity=0.224  Sum_probs=63.9

Q ss_pred             CCeEEEEeccccHHHHHHHHh----CCCCeEEEEchHHHHH----HHHHHhCC-CcEEEEEcChhhhhhhhhccCCCcee
Q 014919          231 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHCR----DSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~----~p~~~~iGvD~~~~a~----~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      ..+|+|||||+|-+....+++    ....++++||-+..|.    ++++.++. ++|+++++|++++ .     .+..+|
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v-~-----lpekvD  260 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV-E-----LPEKVD  260 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS-C-----HSS-EE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC-C-----CCCcee
Confidence            478999999999997655443    3457999999644332    22356676 5699999999987 2     256899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEE
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  341 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~  341 (416)
                      .|..=.-..+ ..  +   ...++.|....|.|||||.++
T Consensus       261 IIVSElLGsf-g~--n---El~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  261 IIVSELLGSF-GD--N---ELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEEE---BTT-BT--T---TSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEEEeccCCc-cc--c---ccCHHHHHHHHhhcCCCCEEe
Confidence            9965321111 11  0   134678999999999999743

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.62  E-value=0.00029  Score=69.03  Aligned_cols=96  Identities=19%  Similarity=0.305  Sum_probs=66.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH---HHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~---~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|||+|....-.|++ ...++++||.+   +.|++..+.+.+ +++.++.+-++++     . .++.+|.+..
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdi-----e-LPEk~DviIS  249 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDI-----E-LPEKVDVIIS  249 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHh-CcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccc-----c-CchhccEEEe
Confidence            3689999999999888776665 45689999954   455555555554 4699999999887     2 3678998864


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHH---HHhhccCCcEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEA---VSDLLVHDGKVF  341 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~---i~r~LkpgG~l~  341 (416)
                         .|.--      -+++++.|+.   .++.|||.|..+
T Consensus       250 ---EPMG~------mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  250 ---EPMGY------MLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             ---ccchh------hhhhHHHHHHHHHHHhhcCCCCccc
Confidence               23210      1234444433   469999999755

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=0.00012  Score=63.78  Aligned_cols=74  Identities=15%  Similarity=0.230  Sum_probs=54.0

Q ss_pred             cCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh----CCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          226 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       226 f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~----~l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      +++-++..++|+|||.|......+ .+....++|+|+...|++.+.++    .+ ++.++++|+..+.     +..+.||
T Consensus        44 ygdiEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle-----~~~g~fD  116 (185)
T KOG3420|consen   44 YGDIEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLE-----LKGGIFD  116 (185)
T ss_pred             hccccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchh-----ccCCeEe
Confidence            444468899999999999885444 33456899999977777655433    22 5789999998762     1358899


Q ss_pred             EEEEE
Q 014919          302 LVSIQ  306 (416)
Q Consensus       302 ~v~~~  306 (416)
                      ...+|
T Consensus       117 taviN  121 (185)
T KOG3420|consen  117 TAVIN  121 (185)
T ss_pred             eEEec
Confidence            99987

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.57  E-value=0.00027  Score=69.44  Aligned_cols=76  Identities=11%  Similarity=0.040  Sum_probs=56.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+..+||.+||.|.++..+++..| +.+++|+|....|++.+++.  ..++++++++|..++. ..++..-.++|.|++.
T Consensus        19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~-~~l~~~~~~vDgIl~D   97 (296)
T PRK00050         19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLK-EVLAEGLGKVDGILLD   97 (296)
T ss_pred             CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHH-HHHHcCCCccCEEEEC
Confidence            357999999999999999999986 78999999877766665432  1458999999999873 3332101278888643

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.56  E-value=3.9e-05  Score=73.71  Aligned_cols=96  Identities=17%  Similarity=0.152  Sum_probs=67.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      +..++|+|||+|..+.    .+|.+.++|.|++...+.-+++.+..  ....+|+..+     |+.+.+||.....-.-.
T Consensus        46 gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~--~~~~ad~l~~-----p~~~~s~d~~lsiavih  114 (293)
T KOG1331|consen   46 GSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGD--NVCRADALKL-----PFREESFDAALSIAVIH  114 (293)
T ss_pred             cceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCc--eeehhhhhcC-----CCCCCccccchhhhhhh
Confidence            7899999999998876    35899999999876555444444433  5678899887     54678888764322222


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      |...+  -||   ...++++.|+|+|||...+
T Consensus       115 hlsT~--~RR---~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  115 HLSTR--ERR---ERALEELLRVLRPGGNALV  141 (293)
T ss_pred             hhhhH--HHH---HHHHHHHHHHhcCCCceEE
Confidence            32222  122   4789999999999998655

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.55  E-value=0.0006  Score=60.79  Aligned_cols=126  Identities=19%  Similarity=0.218  Sum_probs=81.7

Q ss_pred             CCCCcccccccCccccccccccCCCCCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc
Q 014919          205 MLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIAT  283 (416)
Q Consensus       205 ~lPg~~aL~~~~p~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~  283 (416)
                      .+|...-+.+.+-..++|.      .+--|||+|.|||.++.++.++ .++..++++|.+..-..... +..+.+.++.+
T Consensus        29 I~PsSs~lA~~M~s~I~pe------sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~-~~~p~~~ii~g  101 (194)
T COG3963          29 ILPSSSILARKMASVIDPE------SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLN-QLYPGVNIING  101 (194)
T ss_pred             ecCCcHHHHHHHHhccCcc------cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHH-HhCCCcccccc
Confidence            4565544443332234442      2456999999999999987654 67889999998655443332 22456779999


Q ss_pred             Chhhhhhhhh-ccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          284 NATSTFRSIV-ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       284 Da~~l~~~~~-~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      |+.++ +..+ ......||.|++..|---+  + .++|+   +.|+.+...|.+||.++.-|
T Consensus       102 da~~l-~~~l~e~~gq~~D~viS~lPll~~--P-~~~~i---aile~~~~rl~~gg~lvqft  156 (194)
T COG3963         102 DAFDL-RTTLGEHKGQFFDSVISGLPLLNF--P-MHRRI---AILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             chhhH-HHHHhhcCCCeeeeEEeccccccC--c-HHHHH---HHHHHHHHhcCCCCeEEEEE
Confidence            99887 3222 1245679999765432111  1 12233   88999999999999887644

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.49  E-value=0.0015  Score=54.24  Aligned_cols=100  Identities=18%  Similarity=0.206  Sum_probs=63.2

Q ss_pred             EEEEeccccHHHHHHHHhCCC-CeEEEEchHHHHHHHHHHhC--CC--cEEEEEcChhhhhhhhhccCC-CceeEEEEEC
Q 014919          234 VVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLSG--IT--NGYFIATNATSTFRSIVASYP-GKLILVSIQC  307 (416)
Q Consensus       234 vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~~a~~~a~~~~--l~--nv~f~~~Da~~l~~~~~~~~~-~s~D~v~~~f  307 (416)
                      ++|+|||+|... .+++..+. ..++|+|.+..+........  ..  ++.+...|....   .+++.. ..+|.+ ...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~-~~~  126 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG---VLPFEDSASFDLV-ISL  126 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccC---CCCCCCCCceeEE-eee
Confidence            999999999977 44444443 48999997654444322111  11  168888887652   013334 479998 443


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      ...+...        ....+.++.+.|+|+|.+.+....
T Consensus       127 ~~~~~~~--------~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         127 LVLHLLP--------PAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             eehhcCC--------HHHHHHHHHHhcCCCcEEEEEecc
Confidence            2222111        247899999999999999887543

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.49  E-value=0.00025  Score=70.02  Aligned_cols=126  Identities=17%  Similarity=0.187  Sum_probs=75.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-------CCCCeEEEEchHHHHHHHH----HHhC--CCcEEEEEcChhhhhhhhhccC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-------RKDLNFLGLELVTHCRDSL----QLSG--ITNGYFIATNATSTFRSIVASY  296 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-------~p~~~~iGvD~~~~a~~~a----~~~~--l~nv~f~~~Da~~l~~~~~~~~  296 (416)
                      .+.+|+|-.||+|.|+.++.+.       .+..+++|+|+...+...+    .-++  ..+..+.++|.... + ... .
T Consensus        46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~-~-~~~-~  122 (311)
T PF02384_consen   46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEN-D-KFI-K  122 (311)
T ss_dssp             TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTS-H-SCT-S
T ss_pred             ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccc-c-ccc-c
Confidence            3568999999999999998874       4788999999755444332    2233  23456888887543 1 110 1


Q ss_pred             CCceeEEEEECCCCCCCC--cchh-------------hhhhhHHHHHHHHhhccCCcEEEEEeCcHHH-----HHHHHHH
Q 014919          297 PGKLILVSIQCPNPDFNR--PEHR-------------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV-----MLRMKQQ  356 (416)
Q Consensus       297 ~~s~D~v~~~fpdpw~k~--~h~k-------------rRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~-----~~~~~~~  356 (416)
                      ...||.|..|  .||-..  .+.+             ++-..-.|+..+.+.|++||++.+......+     ...+++.
T Consensus       123 ~~~~D~ii~N--PPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~  200 (311)
T PF02384_consen  123 NQKFDVIIGN--PPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKY  200 (311)
T ss_dssp             T--EEEEEEE----CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHH
T ss_pred             ccccccccCC--CCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHH
Confidence            4689999999  455322  1100             0111236899999999999998776544322     3345555


Q ss_pred             HHhC
Q 014919          357 FLEY  360 (416)
Q Consensus       357 ~~~~  360 (416)
                      +.+.
T Consensus       201 ll~~  204 (311)
T PF02384_consen  201 LLEN  204 (311)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            5443

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.49  E-value=0.00056  Score=72.68  Aligned_cols=81  Identities=16%  Similarity=0.157  Sum_probs=50.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC--------CCeEEEEchHHHHHHHHHH----hCCCcEEEEEcChhhhhhhhhccCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK--------DLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPG  298 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p--------~~~~iGvD~~~~a~~~a~~----~~l~nv~f~~~Da~~l~~~~~~~~~~  298 (416)
                      ..+|||.+||+|.++..++...+        +.+++|+|+...+...+..    .+.-++.+.+.|.........+...+
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~  111 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD  111 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence            46899999999999999988764        2678999986666554432    22112444445433210000010135


Q ss_pred             ceeEEEEECCCCCCC
Q 014919          299 KLILVSIQCPNPDFN  313 (416)
Q Consensus       299 s~D~v~~~fpdpw~k  313 (416)
                      .||.|..|  .||-+
T Consensus       112 ~fD~IIgN--PPy~~  124 (524)
T TIGR02987       112 LFDIVITN--PPYGR  124 (524)
T ss_pred             cccEEEeC--CCccc
Confidence            79999999  77754

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.00063  Score=62.78  Aligned_cols=95  Identities=17%  Similarity=0.243  Sum_probs=68.8

Q ss_pred             CCeEEEEeccccHHHHHHHHh--CCCCeEEEEch----HHHHHHHHHH----------hCCCcEEEEEcChhhhhhhhhc
Q 014919          231 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEL----VTHCRDSLQL----------SGITNGYFIATNATSTFRSIVA  294 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~--~p~~~~iGvD~----~~~a~~~a~~----------~~l~nv~f~~~Da~~l~~~~~~  294 (416)
                      +...||+|.|+|.++..+|..  .+..+.+|||.    ++.+.+++..          ....++.++.+|.....+    
T Consensus        83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~----  158 (237)
T KOG1661|consen   83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA----  158 (237)
T ss_pred             CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC----
Confidence            678999999999999998865  34555699994    4444444322          123479999999988732    


Q ss_pred             cCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          295 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       295 ~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                       +...+|.|++--..+              +..+++...|+|||.+++--
T Consensus       159 -e~a~YDaIhvGAaa~--------------~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  159 -EQAPYDAIHVGAAAS--------------ELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             -ccCCcceEEEccCcc--------------ccHHHHHHhhccCCeEEEee
Confidence             467899999874333              45677888999999998843

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.45  E-value=0.002  Score=58.95  Aligned_cols=107  Identities=13%  Similarity=0.193  Sum_probs=73.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ++.++||+=+|+|..+++.+.+. ...++.||...+|.+.    ++..++ .+.+++..|+...++..-  ..+.||.||
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~--~~~~FDlVf  119 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG--TREPFDLVF  119 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC--CCCcccEEE
Confidence            47999999999999999988875 4589999976655444    334453 479999999997654321  223599998


Q ss_pred             EECCCCCCCCcchhhhhhh-HHHHH--HHHhhccCCcEEEEEeCcH
Q 014919          305 IQCPNPDFNRPEHRWRMVQ-RSLVE--AVSDLLVHDGKVFLQSDIE  347 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~-~~~l~--~i~r~LkpgG~l~l~tD~~  347 (416)
                      +   ||-+.+.     +.+ ..-+.  +-..+|+|+|.+++.++..
T Consensus       120 l---DPPy~~~-----l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         120 L---DPPYAKG-----LLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             e---CCCCccc-----hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            7   4533322     111 11122  2457899999999998754

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.45  E-value=0.00021  Score=70.00  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=67.7

Q ss_pred             CCeEEEEeccccHHHHHHHHh----CC----CCeEEEEchHHHHHHHHHHh---------------------------C-
Q 014919          231 QPLVVDIGSGNGLFLLGMARK----RK----DLNFLGLELVTHCRDSLQLS---------------------------G-  274 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~----~p----~~~~iGvD~~~~a~~~a~~~---------------------------~-  274 (416)
                      .-+|+..||.+|.-.-.||-.    .+    +.+++|+|++..++++|++.                           + 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            368999999999876555532    22    46899999877776665421                           0 


Q ss_pred             ------C-CcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          275 ------I-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       275 ------l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                            + ..|+|.+.|+.+.   .+| ..+.||.|++...-.++...      .+...++.+++.|+|||.|++.
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~---~~~-~~~~fD~I~cRNvliyF~~~------~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAK---QWA-VPGPFDAIFCRNVMIYFDKT------TQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCC---CCc-cCCCcceeeHhhHHhcCCHH------HHHHHHHHHHHHhCCCcEEEEe
Confidence                  1 2467777777552   111 24789999764222222111      2348899999999999999885

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.44  E-value=0.0016  Score=63.73  Aligned_cols=112  Identities=18%  Similarity=0.258  Sum_probs=81.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..|||++++.|.-+..+|+..+ ...+++.|++    ....+++++.|..|+..+..|+....+...   ...||.|.
T Consensus        85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~---~~~fd~Vl  161 (283)
T PF01189_consen   85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP---ESKFDRVL  161 (283)
T ss_dssp             TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH---TTTEEEEE
T ss_pred             ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc---ccccchhh
Confidence            467899999999999999999876 6799999964    334455677899999999999988733222   44699998


Q ss_pred             EECCCC----CCCCcchhhh----------hhhHHHHHHHHhhc----cCCcEEEEEe
Q 014919          305 IQCPNP----DFNRPEHRWR----------MVQRSLVEAVSDLL----VHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdp----w~k~~h~krR----------l~~~~~l~~i~r~L----kpgG~l~l~t  344 (416)
                      +--|=.    |-+.+..|++          -+|.++|+...+.|    ||||+++.+|
T Consensus       162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT  219 (283)
T PF01189_consen  162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST  219 (283)
T ss_dssp             EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred             cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence            863322    1112211221          13678999999999    9999999987

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.41  E-value=0.00041  Score=60.10  Aligned_cols=55  Identities=20%  Similarity=0.338  Sum_probs=44.2

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhh
Q 014919          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATS  287 (416)
Q Consensus       233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~  287 (416)
                      ++||||||.|.++..+++..|..+++++|....    ++++++.++++|+++++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            489999999999999999999999999996443    3444555677889988877654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.40  E-value=0.0016  Score=64.78  Aligned_cols=110  Identities=8%  Similarity=0.061  Sum_probs=68.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhC----CCCeEEEEchHHHHHHHHHH----hCCCcEEE--EEcChhhhhhhhhcc--CCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKR----KDLNFLGLELVTHCRDSLQL----SGITNGYF--IATNATSTFRSIVAS--YPG  298 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~----p~~~~iGvD~~~~a~~~a~~----~~l~nv~f--~~~Da~~l~~~~~~~--~~~  298 (416)
                      +..++|+|||+|.-+..|.+..    ....|++||++..+++.+.+    ...+++.+  +++|..+.+. +++.  ...
T Consensus        77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~-~l~~~~~~~  155 (319)
T TIGR03439        77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLA-WLKRPENRS  155 (319)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHh-hcccccccC
Confidence            5689999999999877665543    35789999997766655432    34566655  8898877532 2221  112


Q ss_pred             ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHh-hccCCcEEEEEeCc
Q 014919          299 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD-LLVHDGKVFLQSDI  346 (416)
Q Consensus       299 s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r-~LkpgG~l~l~tD~  346 (416)
                      ...++++.  -.-+.+-.+   .-...||+.+++ .|+||+.|++..|-
T Consensus       156 ~~r~~~fl--GSsiGNf~~---~ea~~fL~~~~~~~l~~~d~lLiG~D~  199 (319)
T TIGR03439       156 RPTTILWL--GSSIGNFSR---PEAAAFLAGFLATALSPSDSFLIGLDG  199 (319)
T ss_pred             CccEEEEe--CccccCCCH---HHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence            23333321  111111111   112489999999 99999999997663

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.39  E-value=0.00055  Score=63.84  Aligned_cols=102  Identities=17%  Similarity=0.124  Sum_probs=64.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-C---CCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-G---ITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-~---l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ...+.||.|+|-|+.+..+...+ -..|--||.+++-++.+++. +   ..-..+.+....++.    | .++.+|+||+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~----P-~~~~YDlIW~  128 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT----P-EEGKYDLIWI  128 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG---------TT-EEEEEE
T ss_pred             CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc----C-CCCcEeEEEe
Confidence            35789999999999998765432 23677777666666665532 2   123677777777662    3 3579999999


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ++.-.+..+.    .+  -+||+++...|+|+|.++++
T Consensus       129 QW~lghLTD~----dl--v~fL~RCk~~L~~~G~IvvK  160 (218)
T PF05891_consen  129 QWCLGHLTDE----DL--VAFLKRCKQALKPNGVIVVK  160 (218)
T ss_dssp             ES-GGGS-HH----HH--HHHHHHHHHHEEEEEEEEEE
T ss_pred             hHhhccCCHH----HH--HHHHHHHHHhCcCCcEEEEE
Confidence            9654432111    12  28999999999999999996

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.37  E-value=0.00053  Score=65.86  Aligned_cols=71  Identities=17%  Similarity=0.131  Sum_probs=54.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCC-ceeEEEEEC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPG-KLILVSIQC  307 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~-s~D~v~~~f  307 (416)
                      +..|||||+|.|.++..|+++.  ..++++|+........++.  ...|++++++|+... +  +  +.. ..+.|+.|-
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~-d--~--~~l~~~~~vVaNl  103 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKF-D--F--PSLAQPYKVVANL  103 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcC-c--c--hhhcCCCEEEEcC
Confidence            6899999999999999999984  4699999866555544433  357999999999886 1  2  221 578888985


Q ss_pred             C
Q 014919          308 P  308 (416)
Q Consensus       308 p  308 (416)
                      |
T Consensus       104 P  104 (259)
T COG0030         104 P  104 (259)
T ss_pred             C
Confidence            4

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.36  E-value=0.00028  Score=65.83  Aligned_cols=100  Identities=11%  Similarity=-0.009  Sum_probs=74.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCc--EEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~n--v~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      ..+.++||||+-|.....|-... --+++-+|.+..+++.++...-+.  +....+|-+.+     ++.++++|+|....
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~L-----df~ens~DLiisSl  145 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFL-----DFKENSVDLIISSL  145 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcc-----cccccchhhhhhhh
Confidence            36889999999999999888775 347899998877777665432222  45566776555     55789999998776


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +-.|....        |..+..++..|||+|.|+-+
T Consensus       146 slHW~NdL--------Pg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  146 SLHWTNDL--------PGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             hhhhhccC--------chHHHHHHHhcCCCccchhH
Confidence            67774221        57788999999999998754

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.22  E-value=0.002  Score=64.30  Aligned_cols=97  Identities=15%  Similarity=0.236  Sum_probs=77.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ++.+|||.=+|-|.|++.+|+...-. ++++|+...|    .++++.++..+ +..+++|+.++..     ..+.+|.|+
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~-----~~~~aDrIi  261 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP-----ELGVADRII  261 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh-----ccccCCEEE
Confidence            48999999999999999999875433 9999986554    44556677877 9999999999832     227899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ++.|..    .        ..|+....+.|++||.+++-+
T Consensus       262 m~~p~~----a--------~~fl~~A~~~~k~~g~iHyy~  289 (341)
T COG2520         262 MGLPKS----A--------HEFLPLALELLKDGGIIHYYE  289 (341)
T ss_pred             eCCCCc----c--------hhhHHHHHHHhhcCcEEEEEe
Confidence            986532    2        378999999999999998853

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.22  E-value=0.0041  Score=57.65  Aligned_cols=102  Identities=17%  Similarity=0.187  Sum_probs=69.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhh-----hhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQLSGITNGYFIATNATST-----FRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l-----~~~~~~~~~~s~D~v  303 (416)
                      .+..|+|||+-.|.++..+++... ...++|+|+..-       ....+|.++++|+..-     +.+.+  ....+|.|
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-------~~~~~V~~iq~d~~~~~~~~~l~~~l--~~~~~DvV  115 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-------KPIPGVIFLQGDITDEDTLEKLLEAL--GGAPVDVV  115 (205)
T ss_pred             CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-------ccCCCceEEeeeccCccHHHHHHHHc--CCCCcceE
Confidence            379999999999999999998754 456999998542       2346799999999752     11222  23447888


Q ss_pred             EEECCCCCCCC-----cchhhhhhh--HHHHHHHHhhccCCcEEEEEe
Q 014919          304 SIQCPNPDFNR-----PEHRWRMVQ--RSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       304 ~~~fpdpw~k~-----~h~krRl~~--~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ..   |+-++.     .+|- |.++  ...++-...+|+|||.+....
T Consensus       116 ~s---D~ap~~~g~~~~Dh~-r~~~L~~~a~~~a~~vL~~~G~fv~K~  159 (205)
T COG0293         116 LS---DMAPNTSGNRSVDHA-RSMYLCELALEFALEVLKPGGSFVAKV  159 (205)
T ss_pred             Ee---cCCCCcCCCccccHH-HHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence            64   333322     1222 2222  455777788999999998863

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.19  E-value=0.003  Score=63.68  Aligned_cols=138  Identities=14%  Similarity=0.162  Sum_probs=94.5

Q ss_pred             EeeeecccCCCCcccccccCc----cccccccccCCCCCCeEEEEeccccHHHHHHHHhCCC------------------
Q 014919          197 VWEFLKGRMLPGVSALDRAFP----FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKD------------------  254 (416)
Q Consensus       197 ~le~l~gr~lPg~~aL~~~~p----~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~------------------  254 (416)
                      +|.....|...+...|.+.+-    ...+|..      ...++|==||+|.++++.|...++                  
T Consensus       160 sLhkRGyR~~~g~ApLketLAaAil~lagw~~------~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~  233 (381)
T COG0116         160 SLHKRGYRVYDGPAPLKETLAAAILLLAGWKP------DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFD  233 (381)
T ss_pred             chhhccccccCCCCCchHHHHHHHHHHcCCCC------CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhcc
Confidence            566666666666666654431    2234522      256889999999999999987652                  


Q ss_pred             --------------C-------eEEEEch----HHHHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          255 --------------L-------NFLGLEL----VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       255 --------------~-------~~iGvD~----~~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                                    .       .++|+|+    ++.|..++++.|+. -|.|.++|+..+ .+    +-+++|.|.+|  
T Consensus       234 ~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l-~~----~~~~~gvvI~N--  306 (381)
T COG0116         234 KDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDL-KE----PLEEYGVVISN--  306 (381)
T ss_pred             HHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhC-CC----CCCcCCEEEeC--
Confidence                          2       2889996    55667777778876 499999999988 21    12689999998  


Q ss_pred             CCCCCCcchhh--hhhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919          309 NPDFNRPEHRW--RMVQRSLVEAVSDLLVHDGKVFLQSDIE  347 (416)
Q Consensus       309 dpw~k~~h~kr--Rl~~~~~l~~i~r~LkpgG~l~l~tD~~  347 (416)
                      .||=..-..+.  .-+++.|.+.+.+.++--+.++|.|+..
T Consensus       307 PPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e~  347 (381)
T COG0116         307 PPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSED  347 (381)
T ss_pred             CCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccHH
Confidence            55532222221  1135788889999999989999987643

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.17  E-value=0.00038  Score=64.41  Aligned_cols=102  Identities=16%  Similarity=0.144  Sum_probs=61.3

Q ss_pred             CCeEEEEeccccHHHHHHHHh--------CC-CCeEEEEchHHHHHHHHHHh-----------------------C----
Q 014919          231 QPLVVDIGSGNGLFLLGMARK--------RK-DLNFLGLELVTHCRDSLQLS-----------------------G----  274 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~--------~p-~~~~iGvD~~~~a~~~a~~~-----------------------~----  274 (416)
                      .-+|+..||++|.-.-.||-.        .+ +.+++|.|++..++++|++.                       +    
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~  111 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR  111 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence            568999999999876555532        12 47999999877766655310                       1    


Q ss_pred             -----CCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          275 -----ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       275 -----l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                           .++|+|.+.|..+. .   + ..+.+|+|++--.--++...      .+...++.+++.|+|||.|++.
T Consensus       112 v~~~lr~~V~F~~~NL~~~-~---~-~~~~fD~I~CRNVlIYF~~~------~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  112 VKPELRKMVRFRRHNLLDP-D---P-PFGRFDLIFCRNVLIYFDPE------TQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             E-HHHHTTEEEEE--TT-S-----------EEEEEE-SSGGGS-HH------HHHHHHHHHGGGEEEEEEEEE-
T ss_pred             EChHHcCceEEEecccCCC-C---c-ccCCccEEEecCEEEEeCHH------HHHHHHHHHHHHcCCCCEEEEe
Confidence                 13588888888772 1   1 35789999875332222211      2358899999999999999995

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=97.12  E-value=0.005  Score=59.49  Aligned_cols=109  Identities=9%  Similarity=-0.066  Sum_probs=73.0

Q ss_pred             CCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--------hCCCcEEEEEcChhhhhhhhhccCCCc
Q 014919          228 DPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--------SGITNGYFIATNATSTFRSIVASYPGK  299 (416)
Q Consensus       228 ~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--------~~l~nv~f~~~Da~~l~~~~~~~~~~s  299 (416)
                      +++..+||=||-|.|..+.++.+. |. +++-||+.....+.+++        ..-++++++..    + .+   ...++
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~-~~---~~~~~  139 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----L-LD---LDIKK  139 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----h-hh---ccCCc
Confidence            446799999999999999999976 54 89999864433333222        12345776641    2 11   02478


Q ss_pred             eeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH----HHHHHHHHHHHh
Q 014919          300 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLE  359 (416)
Q Consensus       300 ~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~----~~~~~~~~~~~~  359 (416)
                      ||+|.+--.+             .++|.+.++++|+|||.+..++...    +.+..+.+.+++
T Consensus       140 fDVIIvDs~~-------------~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~  190 (262)
T PRK00536        140 YDLIICLQEP-------------DIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD  190 (262)
T ss_pred             CCEEEEcCCC-------------ChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh
Confidence            9999875221             1489999999999999999986543    334444555555

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=97.11  E-value=0.0031  Score=56.86  Aligned_cols=126  Identities=17%  Similarity=0.143  Sum_probs=78.0

Q ss_pred             EeccccHHHHHHHHhCC-CCeEEEEch--HH-------HHHHHHHHhCCCcEE-EEEcChhhhhhhhhccCCCceeEEEE
Q 014919          237 IGSGNGLFLLGMARKRK-DLNFLGLEL--VT-------HCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       237 IGCG~G~~~~~lA~~~p-~~~~iGvD~--~~-------~a~~~a~~~~l~nv~-f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ||=|+=.|+..||++++ ..++++.-.  -.       .+..+++...-.++. ....|+..+ .+.+......||.|++
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l-~~~~~~~~~~FDrIiF   81 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKL-HKHFRLKNQRFDRIIF   81 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcc-cccccccCCcCCEEEE
Confidence            67788888899999877 777777753  11       122222222112222 345688777 4433334678999999


Q ss_pred             ECCCCCCCCcch-----hhhhhhHHHHHHHHhhccCCcEEEEEe-CcHHHHHHHHHHHH-hCCCC
Q 014919          306 QCPNPDFNRPEH-----RWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFL-EYGKG  363 (416)
Q Consensus       306 ~fpdpw~k~~h~-----krRl~~~~~l~~i~r~LkpgG~l~l~t-D~~~~~~~~~~~~~-~~~~~  363 (416)
                      |||-.--...+.     +.|.+-..|++.+.++|+++|.+++.. +.++|-.|-++.+. +.++.
T Consensus        82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~  146 (166)
T PF10354_consen   82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLV  146 (166)
T ss_pred             eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCE
Confidence            998553111111     223344699999999999999999863 44456666665554 44543

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.02  E-value=0.0066  Score=56.62  Aligned_cols=114  Identities=15%  Similarity=0.265  Sum_probs=77.7

Q ss_pred             EEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCc-eeEEEEEC
Q 014919          234 VVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGK-LILVSIQC  307 (416)
Q Consensus       234 vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s-~D~v~~~f  307 (416)
                      |.||||-.|...+.|.++..-..++++|++    .+|.++.+..++. ++.+..+|..+.++      ++. +|.|.+--
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~------~~e~~d~ivIAG   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK------PGEDVDTIVIAG   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--------GGG---EEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC------CCCCCCEEEEec
Confidence            689999999999999999888899999974    5566666677865 59999999876532      343 88887642


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      .      .   -. ...++|+.....++..-.|+++.-..  ...+++.+.+++|.+.
T Consensus        75 M------G---G~-lI~~ILe~~~~~~~~~~~lILqP~~~--~~~LR~~L~~~gf~I~  120 (205)
T PF04816_consen   75 M------G---GE-LIIEILEAGPEKLSSAKRLILQPNTH--AYELRRWLYENGFEII  120 (205)
T ss_dssp             E----------HH-HHHHHHHHTGGGGTT--EEEEEESS---HHHHHHHHHHTTEEEE
T ss_pred             C------C---HH-HHHHHHHhhHHHhccCCeEEEeCCCC--hHHHHHHHHHCCCEEE
Confidence            1      1   11 22477888878887777899986543  4467888999998754

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=96.93  E-value=0.0038  Score=58.21  Aligned_cols=100  Identities=14%  Similarity=0.180  Sum_probs=53.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----H---HHH----HHHhC--CCcEEEEEcChhhh--hhhhhc
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----C---RDS----LQLSG--ITNGYFIATNATST--FRSIVA  294 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a---~~~----a~~~~--l~nv~f~~~Da~~l--~~~~~~  294 (416)
                      ...+.+|||||.|......|..++-...+|||+...    |   .+.    ....+  ..++.+.++|..+.  ....+ 
T Consensus        42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~-  120 (205)
T PF08123_consen   42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW-  120 (205)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG-
T ss_pred             CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh-
Confidence            368999999999999999998876666999996321    1   111    11223  34688999998653  11112 


Q ss_pred             cCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          295 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       295 ~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                         ...|+|++|.  --+...      +. ..|.+....||+|.+++-
T Consensus       121 ---s~AdvVf~Nn--~~F~~~------l~-~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  121 ---SDADVVFVNN--TCFDPD------LN-LALAELLLELKPGARIIS  156 (205)
T ss_dssp             ---HC-SEEEE----TTT-HH------HH-HHHHHHHTTS-TT-EEEE
T ss_pred             ---cCCCEEEEec--cccCHH------HH-HHHHHHHhcCCCCCEEEE
Confidence               3468898872  111100      11 334666678888877653

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.88  E-value=0.004  Score=60.33  Aligned_cols=102  Identities=16%  Similarity=0.149  Sum_probs=65.3

Q ss_pred             CCeEEEEeccccHHHHHHH----HhCC-----CCeEEEEchHHHHHHHHHHh-------------------------C--
Q 014919          231 QPLVVDIGSGNGLFLLGMA----RKRK-----DLNFLGLELVTHCRDSLQLS-------------------------G--  274 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA----~~~p-----~~~~iGvD~~~~a~~~a~~~-------------------------~--  274 (416)
                      .-+|.-.||++|.-.-.||    +..|     ..+++|.|++..++++|+..                         +  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5689999999997644443    4454     58999999866666554310                         1  


Q ss_pred             ------CCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          275 ------ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       275 ------l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                            .++|+|-+.|...-   . + ..+.||+|++--.--++..      -.+.+.++.++..|+|||.|++-
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~---~-~-~~~~fD~IfCRNVLIYFd~------~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDD---S-P-FLGKFDLIFCRNVLIYFDE------ETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEChHHhcccEEeecCCCCC---c-c-ccCCCCEEEEcceEEeeCH------HHHHHHHHHHHHHhCCCCEEEEc
Confidence                  12466666665442   1 0 2567998864311111111      13468899999999999999995

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.86  E-value=0.011  Score=64.69  Aligned_cols=122  Identities=15%  Similarity=0.124  Sum_probs=79.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-------C-----CCeEEEEch-------HHHHHH----------HHH-H-----hCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKR-------K-----DLNFLGLEL-------VTHCRD----------SLQ-L-----SGI  275 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~-------p-----~~~~iGvD~-------~~~a~~----------~a~-~-----~~l  275 (416)
                      .-+|+|+|+|+|...+...+.+       |     ..+|+++|.       +.++.+          ... .     .|+
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            4689999999999877666443       4     368999993       111111          010 0     122


Q ss_pred             -------C--cEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          276 -------T--NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       276 -------~--nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                             .  ++.++.+|+.+.+++.    ...+|.+|+   |+......+  .+-++++++.+++.++|||++.--|  
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~----~~~~d~~~l---D~FsP~~np--~~W~~~~~~~l~~~~~~~~~~~t~t--  206 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQL----DARADAWFL---DGFAPAKNP--DMWSPNLFNALARLARPGATLATFT--  206 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhc----cccccEEEe---CCCCCccCh--hhccHHHHHHHHHHhCCCCEEEEee--
Confidence                   1  4668889998875432    356898876   443211111  1235799999999999999988544  


Q ss_pred             HHHHHHHHHHHHhCCCCce
Q 014919          347 EEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~  365 (416)
                        -...++..|.+.||.+.
T Consensus       207 --~a~~vr~~l~~~GF~v~  223 (662)
T PRK01747        207 --SAGFVRRGLQEAGFTVR  223 (662)
T ss_pred             --hHHHHHHHHHHcCCeee
Confidence              34557788889998654

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=96.81  E-value=0.005  Score=57.18  Aligned_cols=102  Identities=13%  Similarity=0.080  Sum_probs=69.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC---CCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~---l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ++.+||+||+|.|.....+-++.|..++| ||.-....++.+..+   -.||..+.+-=++.++..   +++.||.|+.-
T Consensus       101 kggrvLnVGFGMgIidT~iQe~~p~~H~I-iE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L---~d~~FDGI~yD  176 (271)
T KOG1709|consen  101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWI-IEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTL---PDKHFDGIYYD  176 (271)
T ss_pred             CCceEEEeccchHHHHHHHhhcCCcceEE-EecCHHHHHHHHhcccccccceEEEecchHhhhccc---cccCcceeEee
Confidence            58999999999999988887777766554 664444444444443   368888888766654432   57889999753


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                         -+.  .+..   -...|.+.+.|.|||+|.+.+-
T Consensus       177 ---Ty~--e~yE---dl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  177 ---TYS--ELYE---DLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             ---chh--hHHH---HHHHHHHHHhhhcCCCceEEEe
Confidence               220  0000   0126778999999999998774

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.80  E-value=0.0027  Score=55.47  Aligned_cols=59  Identities=27%  Similarity=0.401  Sum_probs=43.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHh----CCCCeEEEEch----HHHHHHHHHHhC--C-CcEEEEEcChhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEL----VTHCRDSLQLSG--I-TNGYFIATNATST  288 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~----~p~~~~iGvD~----~~~a~~~a~~~~--l-~nv~f~~~Da~~l  288 (416)
                      ....|+|+|||.|..+..||..    .++.+++|||.    ...+.+++++.+  . .++++..++....
T Consensus        25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   94 (141)
T PF13679_consen   25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE   94 (141)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh
Confidence            4678999999999999999981    27899999995    445555555544  3 5677777766543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.69  E-value=0.021  Score=56.93  Aligned_cols=128  Identities=16%  Similarity=0.179  Sum_probs=92.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHHHHHHH---------HhCC--CcEEEEEcChhhhhhhhhccCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQ---------LSGI--TNGYFIATNATSTFRSIVASYP  297 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a~~~a~---------~~~l--~nv~f~~~Da~~l~~~~~~~~~  297 (416)
                      ....+|=+|-|.|-.+.++.+ +| -.+++-+|+..++++.++         ++..  ++++++..|+.++++.    ..
T Consensus       289 ~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~----a~  363 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT----AA  363 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh----hc
Confidence            367899999999988888875 67 457888885443333221         2223  4699999999998653    35


Q ss_pred             CceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH----HHHHHHHHHHHhCCCCce
Q 014919          298 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       298 ~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~----~~~~~~~~~~~~~~~~~~  365 (416)
                      +.||.+.+.+|||-..   .-.|+...+|...+.|.|+++|.+.++.-..    +.+-.+...+++.|+..+
T Consensus       364 ~~fD~vIVDl~DP~tp---s~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~  432 (508)
T COG4262         364 DMFDVVIVDLPDPSTP---SIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVW  432 (508)
T ss_pred             ccccEEEEeCCCCCCc---chhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceee
Confidence            6899999999999521   2347888899999999999999999974332    223345667788886543

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.51  E-value=0.01  Score=56.04  Aligned_cols=151  Identities=17%  Similarity=0.085  Sum_probs=93.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+.++||||.-||.|+..+.++ ....++|+|+-..-+..--++...-+.+.+.|++.+.++.|   .+..|.+++--  
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~---~~~~d~~v~Dv--  152 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDF---TEKPDLIVIDV--  152 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHc---ccCCCeEEEEe--
Confidence            4799999999999999998886 35689999974322222112233335667788887755444   23667765431  


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeeccccccccCCCCCCCCCCCCC
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGV  389 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  389 (416)
                      .+.         --...|..+..+|+|++.+..-  ..+.|+...+.+...|.    + .|+            ..+..+
T Consensus       153 SFI---------SL~~iLp~l~~l~~~~~~~v~L--vKPQFEagr~~v~kkGv----v-~d~------------~~~~~v  204 (245)
T COG1189         153 SFI---------SLKLILPALLLLLKDGGDLVLL--VKPQFEAGREQVGKKGV----V-RDP------------KLHAEV  204 (245)
T ss_pred             ehh---------hHHHHHHHHHHhcCCCceEEEE--ecchhhhhhhhcCcCce----e-cCc------------chHHHH
Confidence            110         0136788899999999987763  45678877776654332    1 121            011234


Q ss_pred             CCHHHHHHHHCCCCeEEEEEEeCCC
Q 014919          390 RSDWEQHVIDRGAPMYRLMLSKPSC  414 (416)
Q Consensus       390 ~T~~E~k~~~~G~~i~~~~~~k~~~  414 (416)
                      ..+.+....+.|..+..+.+..+.+
T Consensus       205 ~~~i~~~~~~~g~~~~gl~~Spi~G  229 (245)
T COG1189         205 LSKIENFAKELGFQVKGLIKSPIKG  229 (245)
T ss_pred             HHHHHHHHhhcCcEEeeeEccCccC
Confidence            4555666666677777766666544

>KOG2730 consensus Methylase [General function prediction only]

Probab=96.50  E-value=0.0028  Score=58.94  Aligned_cols=78  Identities=15%  Similarity=0.123  Sum_probs=55.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      +.+.|+|.=||-|..++..|.++|  .|++||+.    .-|.++++-.|++ +|.|+|+|..++...+ .+....+|+++
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~l-q~~K~~~~~vf  170 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKL-KADKIKYDCVF  170 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHH-hhhhheeeeee
Confidence            368899999999999999999976  79999973    3344455556765 5999999998875322 11233455665


Q ss_pred             EECCCCCC
Q 014919          305 IQCPNPDF  312 (416)
Q Consensus       305 ~~fpdpw~  312 (416)
                      ..  .||-
T Consensus       171 ~s--ppwg  176 (263)
T KOG2730|consen  171 LS--PPWG  176 (263)
T ss_pred             cC--CCCC
Confidence            43  5663

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.47  E-value=0.087  Score=49.47  Aligned_cols=124  Identities=17%  Similarity=0.148  Sum_probs=83.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHH--HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQ--LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~--~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+.+||-+|..+|.....++.-. |+-.++|||.+.+..+.+-  ...-+|+--+.+||..- ..+-. .-+.+|+|+..
T Consensus        73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P-~~Y~~-lv~~VDvI~~D  150 (229)
T PF01269_consen   73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHP-EKYRM-LVEMVDVIFQD  150 (229)
T ss_dssp             TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSG-GGGTT-TS--EEEEEEE
T ss_pred             CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCCh-HHhhc-ccccccEEEec
Confidence            47899999999999999999864 5889999998765544321  12347999999999864 22211 23589999887


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe---------CcHHHHHHHHHHHHhCCCCce
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t---------D~~~~~~~~~~~~~~~~~~~~  365 (416)
                      -..|-    +.      .-++......||+||.+++..         +.+..|..-.+.+++.++...
T Consensus       151 VaQp~----Qa------~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~  208 (229)
T PF01269_consen  151 VAQPD----QA------RIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPL  208 (229)
T ss_dssp             -SSTT----HH------HHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEE
T ss_pred             CCChH----HH------HHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChh
Confidence            54331    11      245667778999999988752         445566666777888777643

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.43  E-value=0.0033  Score=63.53  Aligned_cols=99  Identities=14%  Similarity=0.091  Sum_probs=66.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ...++|+|||-|.....++. +..++++|+|...    ++...+....++| -.++.+|+...     |++++.+|.+.+
T Consensus       111 ~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~-----~fedn~fd~v~~  184 (364)
T KOG1269|consen  111 GSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM-----PFEDNTFDGVRF  184 (364)
T ss_pred             cccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC-----CCCccccCcEEE
Confidence            34789999999999888875 4678999999632    2222233334433 23366777665     457899999876


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .-.-.+ ...|       ..++++++|+++|||++...
T Consensus       185 ld~~~~-~~~~-------~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  185 LEVVCH-APDL-------EKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             Eeeccc-CCcH-------HHHHHHHhcccCCCceEEeH
Confidence            632221 1111       38899999999999998873

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.15  E-value=0.074  Score=48.54  Aligned_cols=121  Identities=18%  Similarity=0.228  Sum_probs=72.4

Q ss_pred             CCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc-Chhhhh--hhhhc-cCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-NATSTF--RSIVA-SYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~-Da~~l~--~~~~~-~~~~s~D~v~~  305 (416)
                      +.+|||+||..|.++...-++ +|+..++|||+.--       ..++.+.++++ |+.+-.  ...|. .++..+|+|..
T Consensus        70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlS  142 (232)
T KOG4589|consen   70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-------EPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLS  142 (232)
T ss_pred             CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-------cCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEe
Confidence            789999999999999877776 49999999997321       12334555565 555421  11121 14677898865


Q ss_pred             E-CCCCC-CCCcchhhhhhh--HHHHHHHHhhccCCcEEEEEe----CcHHHHHHHHHHHHh
Q 014919          306 Q-CPNPD-FNRPEHRWRMVQ--RSLVEAVSDLLVHDGKVFLQS----DIEEVMLRMKQQFLE  359 (416)
Q Consensus       306 ~-fpdpw-~k~~h~krRl~~--~~~l~~i~r~LkpgG~l~l~t----D~~~~~~~~~~~~~~  359 (416)
                      - .|++- ...+.|- |++.  .+.|.-....++|+|.+.+++    +...+-..|.+.|+.
T Consensus       143 DMapnaTGvr~~Dh~-~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~  203 (232)
T KOG4589|consen  143 DMAPNATGVRIRDHY-RSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTN  203 (232)
T ss_pred             ccCCCCcCcchhhHH-HHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhh
Confidence            3 23221 0112221 2222  234455566789999999874    444555556665554

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.10  E-value=0.14  Score=47.32  Aligned_cols=125  Identities=17%  Similarity=0.143  Sum_probs=88.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH--HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ--LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~--~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+..||=+|.-+|....+.+.-.++-.++|||.+.+..+..-  ...-+|+--+..||..- ..+- .--+.+|+|+.-.
T Consensus        76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P-~~Y~-~~Ve~VDviy~DV  153 (231)
T COG1889          76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKP-EKYR-HLVEKVDVIYQDV  153 (231)
T ss_pred             CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCc-HHhh-hhcccccEEEEec
Confidence            578999999999999999999888889999997655444321  12357899999999864 2221 0235699998764


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE---------eCcHHHHHHHHHHHHhCCCCcee
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ---------SDIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~---------tD~~~~~~~~~~~~~~~~~~~~~  366 (416)
                      ..|-    +.      .-+.......||+||.++++         .|-...|..-.+.+++.+|....
T Consensus       154 AQp~----Qa------~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e  211 (231)
T COG1889         154 AQPN----QA------EILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILE  211 (231)
T ss_pred             CCch----HH------HHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence            4441    11      24567778899999976663         25567777777788888776543

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=96.08  E-value=0.02  Score=55.05  Aligned_cols=107  Identities=14%  Similarity=0.156  Sum_probs=67.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--hCC---CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGI---TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--~~l---~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ....|||||-|||..+..|.++  ..+|+++|+..+.....++  +|.   ..++++.+|....       +...||.+.
T Consensus        58 ~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~-------d~P~fd~cV  128 (315)
T KOG0820|consen   58 PTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT-------DLPRFDGCV  128 (315)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC-------CCcccceee
Confidence            3689999999999999999988  6799999976555444332  233   2499999999776       123577776


Q ss_pred             EECCCCCCC-----Ccchh---h---hhhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919          305 IQCPNPDFN-----RPEHR---W---RMVQRSLVEAVSDLLVHDGKVFLQSDIE  347 (416)
Q Consensus       305 ~~fpdpw~k-----~~h~k---r---Rl~~~~~l~~i~r~LkpgG~l~l~tD~~  347 (416)
                      .|.|.....     .-.+.   |   -+++.+|...+  +=+||-.+|+..+..
T Consensus       129 sNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RL--va~pgd~~Ycrlsin  180 (315)
T KOG0820|consen  129 SNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRL--VARPGDSLYCRLSIN  180 (315)
T ss_pred             ccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhh--ccCCCCchhceeehh
Confidence            664322110     00000   0   01244554444  457888888876654

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=96.02  E-value=0.036  Score=55.18  Aligned_cols=96  Identities=13%  Similarity=0.115  Sum_probs=65.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      -...+|+|-|.|..+..+...+|+...+=.|. ....+.+...+ +.|..+-+|..+-    .|  .  -|.|++.+.-.
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdl-p~v~~~a~~~~-~gV~~v~gdmfq~----~P--~--~daI~mkWiLh  247 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDL-PFVLAAAPYLA-PGVEHVAGDMFQD----TP--K--GDAIWMKWILH  247 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCCCceeecCH-HHHHhhhhhhc-CCcceeccccccc----CC--C--cCeEEEEeecc
Confidence            58899999999999999999999766555553 22233322333 5577888887543    23  2  35888775422


Q ss_pred             -CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          311 -DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       311 -w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                       |. +.+    .  -+||++++..|+|||.+++.
T Consensus       248 dwt-Ded----c--vkiLknC~~sL~~~GkIiv~  274 (342)
T KOG3178|consen  248 DWT-DED----C--VKILKNCKKSLPPGGKIIVV  274 (342)
T ss_pred             cCC-hHH----H--HHHHHHHHHhCCCCCEEEEE
Confidence             32 211    1  38999999999999999986

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.01  E-value=0.084  Score=50.97  Aligned_cols=75  Identities=16%  Similarity=0.160  Sum_probs=53.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+..|||||+|.|.++..|++..  .+++++|......+..++.  ..+|++++.+|+..+ +.... ..+.-..|+.|.
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~-~~~~~-~~~~~~~vv~Nl  105 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKW-DLYDL-LKNQPLLVVGNL  105 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTS-CGGGH-CSSSEEEEEEEE
T ss_pred             CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhcc-ccHHh-hcCCceEEEEEe
Confidence            47899999999999999999986  7999999866555555442  357899999999887 21100 123455677774


Q ss_pred             C
Q 014919          308 P  308 (416)
Q Consensus       308 p  308 (416)
                      |
T Consensus       106 P  106 (262)
T PF00398_consen  106 P  106 (262)
T ss_dssp             T
T ss_pred             c
Confidence            3

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=95.97  E-value=0.02  Score=56.31  Aligned_cols=81  Identities=12%  Similarity=0.209  Sum_probs=41.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHh-CCC-cEEEEEcChh-hhhhhhhccCCCceeEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLS-GIT-NGYFIATNAT-STFRSIVASYPGKLILV  303 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~-~l~-nv~f~~~Da~-~l~~~~~~~~~~s~D~v  303 (416)
                      .-++||||||.-..--.|+.+..+++|+|.|+..    .|.+.++.+ +++ +|+++...-. .++..... ..+.||..
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~-~~e~~dft  181 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ-PNERFDFT  181 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT---S-EEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc-ccceeeEE
Confidence            5689999999987754555444489999999744    455555566 665 5887765432 23222221 34678988


Q ss_pred             EEECCCCCCCC
Q 014919          304 SIQCPNPDFNR  314 (416)
Q Consensus       304 ~~~fpdpw~k~  314 (416)
                      .+|  .|++..
T Consensus       182 mCN--PPFy~s  190 (299)
T PF05971_consen  182 MCN--PPFYSS  190 (299)
T ss_dssp             EE-------SS
T ss_pred             ecC--CccccC
Confidence            887  566543

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=95.80  E-value=0.072  Score=46.52  Aligned_cols=84  Identities=11%  Similarity=0.127  Sum_probs=51.6

Q ss_pred             eEEEEchHHHHHH----HHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcch---hhhhhhHHHH
Q 014919          256 NFLGLELVTHCRD----SLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH---RWRMVQRSLV  327 (416)
Q Consensus       256 ~~iGvD~~~~a~~----~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~---krRl~~~~~l  327 (416)
                      +|+|+|+-+.|++    +.++.++. ++++++.+-..+ .++++  ++++|.+.+|+-  |.+...+   -+.-..-..+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l-~~~i~--~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al   75 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENL-DEYIP--EGPVDAAIFNLG--YLPGGDKSITTKPETTLKAL   75 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGG-GGT----S--EEEEEEEES--B-CTS-TTSB--HHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHH-HhhCc--cCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHH
Confidence            5899998555544    44555654 699999998887 55552  358999998852  2111111   1111234779


Q ss_pred             HHHHhhccCCcEEEEEe
Q 014919          328 EAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       328 ~~i~r~LkpgG~l~l~t  344 (416)
                      +.+.+.|+|||.+.+..
T Consensus        76 ~~al~lL~~gG~i~iv~   92 (140)
T PF06962_consen   76 EAALELLKPGGIITIVV   92 (140)
T ss_dssp             HHHHHHEEEEEEEEEEE
T ss_pred             HHHHHhhccCCEEEEEE
Confidence            99999999999999874

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PRK10742 putative methyltransferase; Provisional

Probab=95.75  E-value=0.18  Score=48.30  Aligned_cols=70  Identities=17%  Similarity=0.124  Sum_probs=51.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEch-------HHHHHHHHHH---hC--C-CcEEEEEcChhhhhhhhhccCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-------VTHCRDSLQL---SG--I-TNGYFIATNATSTFRSIVASYP  297 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~-------~~~a~~~a~~---~~--l-~nv~f~~~Da~~l~~~~~~~~~  297 (416)
                      .+.|||.=+|.|.-++.+|.+  ++.++++|.       +...++++..   .+  + .|++++++|+.+++.. .   .
T Consensus        89 ~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~-~---~  162 (250)
T PRK10742         89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-I---T  162 (250)
T ss_pred             CCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh-C---C
Confidence            469999999999999999988  778999993       2233333211   12  2 5799999999998753 2   3


Q ss_pred             CceeEEEEE
Q 014919          298 GKLILVSIQ  306 (416)
Q Consensus       298 ~s~D~v~~~  306 (416)
                      .+||+||+-
T Consensus       163 ~~fDVVYlD  171 (250)
T PRK10742        163 PRPQVVYLD  171 (250)
T ss_pred             CCCcEEEEC
Confidence            479999873

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=95.72  E-value=0.05  Score=54.34  Aligned_cols=86  Identities=10%  Similarity=0.097  Sum_probs=61.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+..+|||||++|.++..|+++  +..|+|||....+-. .  ..-++|..++.|.....    | ..+.+|.+++-...
T Consensus       211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~-L--~~~~~V~h~~~d~fr~~----p-~~~~vDwvVcDmve  280 (357)
T PRK11760        211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQS-L--MDTGQVEHLRADGFKFR----P-PRKNVDWLVCDMVE  280 (357)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHh-h--hCCCCEEEEeccCcccC----C-CCCCCCEEEEeccc
Confidence            4789999999999999999998  569999995432211 1  23467999999987762    2 25678998765321


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCC
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHD  337 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~Lkpg  337 (416)
                      .      +      .+.++.+.++|..|
T Consensus       281 ~------P------~rva~lm~~Wl~~g  296 (357)
T PRK11760        281 K------P------ARVAELMAQWLVNG  296 (357)
T ss_pred             C------H------HHHHHHHHHHHhcC
Confidence            1      1      25667788888776

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=95.56  E-value=0.16  Score=51.73  Aligned_cols=112  Identities=17%  Similarity=0.180  Sum_probs=79.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||..+..|.=+..+|.... .-.+++.|..    .....++.+.|..|...+..|..++....|   .++||.|.
T Consensus       241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~---~~~fDRVL  317 (460)
T KOG1122|consen  241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF---PGSFDRVL  317 (460)
T ss_pred             CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc---Ccccceee
Confidence            478999999999999999888644 3478999953    334455677899999999999987733444   34999998


Q ss_pred             EECCC---------C---CCCCcch--hhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPN---------P---DFNRPEH--RWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpd---------p---w~k~~h~--krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +--|=         +   |.+....  +.-.+|.++|......+++||+|..+|
T Consensus       318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence            75321         1   1110000  011246789999999999999999886

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=95.53  E-value=0.0049  Score=56.88  Aligned_cols=93  Identities=23%  Similarity=0.277  Sum_probs=61.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE-CC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ-CP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~-fp  308 (416)
                      ...++||+|.|.|..+..|+..+.  .+++.|++..++.+.+..+.. |-    .+.+.+.     .+-.+|+|.+. .-
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk~yn-Vl----~~~ew~~-----t~~k~dli~clNlL  179 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKKNYN-VL----TEIEWLQ-----TDVKLDLILCLNLL  179 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhcCCc-ee----eehhhhh-----cCceeehHHHHHHH
Confidence            467899999999999999998765  588889888888877665532 21    1122211     13357776532 11


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccC-CcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVH-DGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~Lkp-gG~l~l~  343 (416)
                      |-.+.         .-.+|+.++.+|+| +|+++++
T Consensus       180 DRc~~---------p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  180 DRCFD---------PFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             HhhcC---------hHHHHHHHHHHhccCCCcEEEE
Confidence            11100         02789999999999 8987764

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=95.09  E-value=0.12  Score=51.19  Aligned_cols=76  Identities=11%  Similarity=0.058  Sum_probs=56.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--C-CCcEEEEEcChhhhhhhhhcc-CCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--G-ITNGYFIATNATSTFRSIVAS-YPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~-l~nv~f~~~Da~~l~~~~~~~-~~~s~D~v~~  305 (416)
                      .+.+++|-=||.|.++..++++.|+..++|+|....|++.+++.  . ..++++++++..++. ..+.. ...++|.|++
T Consensus        20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~-~~l~~~~~~~vDgIl~   98 (305)
T TIGR00006        20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFF-EHLDELLVTKIDGILV   98 (305)
T ss_pred             CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHH-HHHHhcCCCcccEEEE
Confidence            35799999999999999999998779999999766666554321  1 247999999999873 33321 2356888865


Q ss_pred             E
Q 014919          306 Q  306 (416)
Q Consensus       306 ~  306 (416)
                      .
T Consensus        99 D   99 (305)
T TIGR00006        99 D   99 (305)
T ss_pred             e
Confidence            4

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=95.07  E-value=0.079  Score=51.20  Aligned_cols=122  Identities=14%  Similarity=0.191  Sum_probs=60.4

Q ss_pred             CCeEEEEecccc--HHHHHHHHh-CCCCeEEEEchH----HHHHHHHHHhCCCc--EEEEEcChhhhhhhhhcc------
Q 014919          231 QPLVVDIGSGNG--LFLLGMARK-RKDLNFLGLELV----THCRDSLQLSGITN--GYFIATNATSTFRSIVAS------  295 (416)
Q Consensus       231 ~~~vLDIGCG~G--~~~~~lA~~-~p~~~~iGvD~~----~~a~~~a~~~~l~n--v~f~~~Da~~l~~~~~~~------  295 (416)
                      -...||||||-=  ..+-+.|++ .|+++|+=+|.-    ..++....  +-++  ..++++|+.+. ...+..      
T Consensus        69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~--~~~~g~t~~v~aD~r~p-~~iL~~p~~~~~  145 (267)
T PF04672_consen   69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLA--DNPRGRTAYVQADLRDP-EAILAHPEVRGL  145 (267)
T ss_dssp             --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHT--T-TTSEEEEEE--TT-H-HHHHCSHHHHCC
T ss_pred             cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhc--CCCCccEEEEeCCCCCH-HHHhcCHHHHhc
Confidence            467999999943  346666664 799999999953    33333332  3345  89999999875 333310      


Q ss_pred             --CCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe---C-cHHHHHHHHHHHHhCC
Q 014919          296 --YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---D-IEEVMLRMKQQFLEYG  361 (416)
Q Consensus       296 --~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t---D-~~~~~~~~~~~~~~~~  361 (416)
                        .+..+-++ +.-.-+|..+...     -..+++.+...|.||.+|.++.   | .....+.+.+.+.+.+
T Consensus       146 lD~~rPVavl-l~~vLh~v~D~~d-----p~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~  211 (267)
T PF04672_consen  146 LDFDRPVAVL-LVAVLHFVPDDDD-----PAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAG  211 (267)
T ss_dssp             --TTS--EEE-ECT-GGGS-CGCT-----HHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred             CCCCCCeeee-eeeeeccCCCccC-----HHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence              12223233 2222222222111     1388999999999999999973   2 2233344555565544

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK13699 putative methylase; Provisional

Probab=95.04  E-value=0.099  Score=49.50  Aligned_cols=81  Identities=12%  Similarity=0.072  Sum_probs=52.7

Q ss_pred             EEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCC---Ccchhh---h---hhhHHHHHHHHhhccCCcEEEEEeCcHH
Q 014919          278 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFN---RPEHRW---R---MVQRSLVEAVSDLLVHDGKVFLQSDIEE  348 (416)
Q Consensus       278 v~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k---~~h~kr---R---l~~~~~l~~i~r~LkpgG~l~l~tD~~~  348 (416)
                      .+++++|+.+++.. +  +++++|+|+..  .|+..   ....+.   .   -....++++++|+|||||.+++-+++..
T Consensus         2 ~~l~~gD~le~l~~-l--pd~SVDLIiTD--PPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~   76 (227)
T PRK13699          2 SRFILGNCIDVMAR-F--PDNAVDFILTD--PPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNR   76 (227)
T ss_pred             CeEEechHHHHHHh-C--CccccceEEeC--CCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecccc
Confidence            46889999987653 3  58999999874  34421   111110   0   1124778999999999999987666543


Q ss_pred             HHHHHHHHHHhCCCCc
Q 014919          349 VMLRMKQQFLEYGKGK  364 (416)
Q Consensus       349 ~~~~~~~~~~~~~~~~  364 (416)
                      . ......+++.||.+
T Consensus        77 ~-~~~~~al~~~GF~l   91 (227)
T PRK13699         77 V-DRFMAAWKNAGFSV   91 (227)
T ss_pred             H-HHHHHHHHHCCCEE
Confidence            2 33455677778754

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.01  E-value=0.39  Score=44.99  Aligned_cols=118  Identities=11%  Similarity=0.139  Sum_probs=84.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      +..+.||||-.+.....|-+++|...+++.|++    ..|.++..++++ +.++...+|....+.     .+..+|.+++
T Consensus        17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-----~~d~~d~ivI   91 (226)
T COG2384          17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-----LEDEIDVIVI   91 (226)
T ss_pred             CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-----ccCCcCEEEE
Confidence            344999999999999999999999999999974    556666666665 457777888744321     2447899887


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      --.      .-   ++ ...+|++-.+.|+.==++.++..+..  .++++.+..++|.+.
T Consensus        92 AGM------GG---~l-I~~ILee~~~~l~~~~rlILQPn~~~--~~LR~~L~~~~~~I~  139 (226)
T COG2384          92 AGM------GG---TL-IREILEEGKEKLKGVERLILQPNIHT--YELREWLSANSYEIK  139 (226)
T ss_pred             eCC------cH---HH-HHHHHHHhhhhhcCcceEEECCCCCH--HHHHHHHHhCCceee
Confidence            521      11   12 24778888888876567888765543  367788888888654

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=94.98  E-value=0.12  Score=50.08  Aligned_cols=123  Identities=17%  Similarity=0.153  Sum_probs=79.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH-------HHH-------------------------HHH-----
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC-------RDS-------------------------LQL-----  272 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a-------~~~-------------------------a~~-----  272 (416)
                      +..+||==|||-|+++..+|.+  +..+.|.|.+..+       +..                         .+.     
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            4689999999999999999998  7789999943221       110                         000     


Q ss_pred             -------hCCCcEEEEEcChhhhhhhhhccCCCceeEE-EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE-
Q 014919          273 -------SGITNGYFIATNATSTFRSIVASYPGKLILV-SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-  343 (416)
Q Consensus       273 -------~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v-~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~-  343 (416)
                             ....|+.+..+|..++...  +...+++|.| +++|-|--    +   -+  -++++.|+++|||||.++=. 
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~--~~~~~~~d~VvT~FFIDTA----~---Ni--~~Yi~tI~~lLkpgG~WIN~G  202 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGP--DENKGSFDVVVTCFFIDTA----E---NI--IEYIETIEHLLKPGGYWINFG  202 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCC--cccCCcccEEEEEEEeech----H---HH--HHHHHHHHHHhccCCEEEecC
Confidence                   0123577777777776221  0013688987 45555541    1   12  38999999999999964311 


Q ss_pred             ------eC--------cHHHHHHHHHHHHhCCCCce
Q 014919          344 ------SD--------IEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       344 ------tD--------~~~~~~~~~~~~~~~~~~~~  365 (416)
                            .+        .+--.+++.++.+..||...
T Consensus       203 PLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~  238 (270)
T PF07942_consen  203 PLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIE  238 (270)
T ss_pred             CccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEE
Confidence                  12        12236778888888888754

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=94.82  E-value=0.12  Score=48.16  Aligned_cols=104  Identities=14%  Similarity=0.164  Sum_probs=51.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHh---C-CCCeEEEEchHHHH--HHHHHHhCC-CcEEEEEcChhhhhhhhhccCC--Cce
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK---R-KDLNFLGLELVTHC--RDSLQLSGI-TNGYFIATNATSTFRSIVASYP--GKL  300 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~---~-p~~~~iGvD~~~~a--~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~--~s~  300 (416)
                      .+.+|+|+|.-.|..++.+|..   . ++.+++|||+.-+.  ++..+.+.+ ++|+|+++|..+. ....+...  ...
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~-~~~~~v~~~~~~~  110 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDP-EIVDQVRELASPP  110 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSST-HHHHTSGSS----
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCH-HHHHHHHHhhccC
Confidence            4689999999999999887753   3 88999999983221  222222332 5799999998764 21111000  111


Q ss_pred             eEE-EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          301 ILV-SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       301 D~v-~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      +.+ .+.  |.-|...|     + ..-|+.+...+++|+++++
T Consensus       111 ~~vlVil--Ds~H~~~h-----v-l~eL~~y~plv~~G~Y~IV  145 (206)
T PF04989_consen  111 HPVLVIL--DSSHTHEH-----V-LAELEAYAPLVSPGSYLIV  145 (206)
T ss_dssp             SSEEEEE--SS----SS-----H-HHHHHHHHHT--TT-EEEE
T ss_pred             CceEEEE--CCCccHHH-----H-HHHHHHhCccCCCCCEEEE
Confidence            212 222  43322222     2 2557779999999999877

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.60  E-value=0.032  Score=49.71  Aligned_cols=122  Identities=17%  Similarity=0.161  Sum_probs=76.3

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-------CCCcEEEEEcChhhhhhhhhccCCCceeE
Q 014919          231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-------GITNGYFIATNATSTFRSIVASYPGKLIL  302 (416)
Q Consensus       231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-------~l~nv~f~~~Da~~l~~~~~~~~~~s~D~  302 (416)
                      +..|||+|-| +|-.++.+|...|+..|.-.|..+.+.++.++-       +++.+..++-+...- ...  .....||.
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a-qsq--~eq~tFDi  106 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA-QSQ--QEQHTFDI  106 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh-HHH--HhhCcccE
Confidence            5789999998 455677788889999999999766555544321       223232222222111 000  12458999


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc-HHHHHHHHHHHHhCCCC
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~-~~~~~~~~~~~~~~~~~  363 (416)
                      |...  |.-+-+.||      .++++.|.+.|+|.|.-.+.+.- .+..+..+++....+|.
T Consensus       107 IlaA--DClFfdE~h------~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~  160 (201)
T KOG3201|consen  107 ILAA--DCLFFDEHH------ESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFT  160 (201)
T ss_pred             EEec--cchhHHHHH------HHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeE
Confidence            8754  665545554      48999999999999986664432 23455556667777754

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=94.59  E-value=0.22  Score=48.53  Aligned_cols=103  Identities=14%  Similarity=0.173  Sum_probs=57.6

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhC-CCCeEEEEchHHHHHHHHHH-----hCC-CcEEEEEcChhhhhhhhhccCCCceeE
Q 014919          231 QPLVVDIGSGN-GLFLLGMARKR-KDLNFLGLELVTHCRDSLQL-----SGI-TNGYFIATNATSTFRSIVASYPGKLIL  302 (416)
Q Consensus       231 ~~~vLDIGCG~-G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~-----~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~  302 (416)
                      ..+|+=||||. -..++.||+++ +++.|+++|+...|.+.+++     .++ .++.|+.+|+.+...     .-..+|.
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~-----dl~~~Dv  195 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY-----DLKEYDV  195 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G-----G----SE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc-----ccccCCE
Confidence            35999999995 44566777654 68899999986666554432     244 359999999987621     1257999


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      |++.---.  -...+|     .+.|+.+.+.++||..+.+++-
T Consensus       196 V~lAalVg--~~~e~K-----~~Il~~l~~~m~~ga~l~~Rsa  231 (276)
T PF03059_consen  196 VFLAALVG--MDAEPK-----EEILEHLAKHMAPGARLVVRSA  231 (276)
T ss_dssp             EEE-TT-S------SH-----HHHHHHHHHHS-TTSEEEEEE-
T ss_pred             EEEhhhcc--cccchH-----HHHHHHHHhhCCCCcEEEEecc
Confidence            98752111  012234     3789999999999999999863

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=94.38  E-value=0.2  Score=52.00  Aligned_cols=100  Identities=11%  Similarity=0.093  Sum_probs=69.0

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC---CCcEEEEEcChhhhhhhhhccCCCceeEEEE----
Q 014919          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSI----  305 (416)
Q Consensus       233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~---l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~----  305 (416)
                      ++|-+|||+-.+...+-+. -...++-+|++..+.+.....+   .+-.++...|+..+     .+++++||.|..    
T Consensus        51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l-----~fedESFdiVIdkGtl  124 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQL-----VFEDESFDIVIDKGTL  124 (482)
T ss_pred             eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccccCCcceEEEEecchhc-----cCCCcceeEEEecCcc
Confidence            7899999999998887765 2446778887665555443322   23488999998877     347889998742    


Q ss_pred             --ECC---CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          306 --QCP---NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       306 --~fp---dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                        .|.   ++|.+  ++     -...+.+++|+|++||++...|-
T Consensus       125 Dal~~de~a~~~~--~~-----v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  125 DALFEDEDALLNT--AH-----VSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             ccccCCchhhhhh--HH-----hhHHHhhHHHHhccCCEEEEEEe
Confidence              122   23322  11     14778999999999999776653

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=94.31  E-value=0.076  Score=48.50  Aligned_cols=96  Identities=16%  Similarity=0.190  Sum_probs=62.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ...+.|+|.|+|..+.-.|+.  .-++++||...+..+.++    -.|..|+.++.+|+.+.     .+  ...|.|.+-
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y-----~f--e~ADvvicE  103 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY-----DF--ENADVVICE  103 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc-----cc--cccceeHHH
Confidence            478999999999988877766  558999997544333333    34778999999999876     21  345666433


Q ss_pred             CCCCC-CCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          307 CPNPD-FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       307 fpdpw-~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      .-|-- ....       +-..++.+...||.++.++=
T Consensus       104 mlDTaLi~E~-------qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         104 MLDTALIEEK-------QVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             HhhHHhhccc-------ccHHHHHHHHHhhcCCcccc
Confidence            22211 0000       11456666667888887653

>PRK11524 putative methyltransferase; Provisional

Probab=94.15  E-value=0.21  Score=48.79  Aligned_cols=81  Identities=9%  Similarity=0.059  Sum_probs=51.2

Q ss_pred             CcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcc-----hh---hhh--hhHHHHHHHHhhccCCcEEEEEeC
Q 014919          276 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE-----HR---WRM--VQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       276 ~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h-----~k---rRl--~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      .+-+++++|+.+.+.. +  ++++||+|++.  .|+.....     ..   .+.  ....++.++.|+|||||.+++.++
T Consensus         7 ~~~~i~~gD~~~~l~~-l--~~~siDlIitD--PPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~   81 (284)
T PRK11524          7 EAKTIIHGDALTELKK-I--PSESVDLIFAD--PPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS   81 (284)
T ss_pred             CCCEEEeccHHHHHHh-c--ccCcccEEEEC--CCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            4567899999997542 3  47899999885  33321110     00   011  124789999999999999999877


Q ss_pred             cHHHHHHHHHHHHhCCCC
Q 014919          346 IEEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~  363 (416)
                      ..... + ...+.+.++.
T Consensus        82 ~~~~~-~-~~~~~~~~f~   97 (284)
T PRK11524         82 TENMP-F-IDLYCRKLFT   97 (284)
T ss_pred             chhhh-H-HHHHHhcCcc
Confidence            75432 2 2334444543

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=94.12  E-value=0.98  Score=43.03  Aligned_cols=124  Identities=11%  Similarity=0.090  Sum_probs=66.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..||=||=.-- .++++|...+..+++-+|+.++.    .+.+++.|++ ++..+.|.+.-+++.+   .+.||+++.
T Consensus        44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~---~~~fD~f~T  118 (243)
T PF01861_consen   44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEEL---RGKFDVFFT  118 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTT---SS-BSEEEE
T ss_pred             cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHH---hcCCCEEEe
Confidence            4788999996554 34556666677899999974433    3445677887 9999999988655433   589999987


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCc-EEEEE-eCcH-HH--HHHHHHHHHhCCCCceee
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQ-SDIE-EV--MLRMKQQFLEYGKGKLVL  367 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG-~l~l~-tD~~-~~--~~~~~~~~~~~~~~~~~~  367 (416)
                      .  .||....       -.-|+.+....||.-| ..++. +..+ ..  ...+.+.+.+.|+.+...
T Consensus       119 D--PPyT~~G-------~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~di  176 (243)
T PF01861_consen  119 D--PPYTPEG-------LKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDI  176 (243)
T ss_dssp             -----SSHHH-------HHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEE
T ss_pred             C--CCCCHHH-------HHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHH
Confidence            5  4552211       1378999999999766 55554 2222 12  334667777888765443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=94.04  E-value=0.71  Score=45.17  Aligned_cols=123  Identities=18%  Similarity=0.191  Sum_probs=86.7

Q ss_pred             CCCCCeEEEEeccccHHHHHHHHhCCC-CeEEEEchHHHH----HHHHH--HhCC--CcEEEEEcChhhhhhhhhccCCC
Q 014919          228 DPAQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHC----RDSLQ--LSGI--TNGYFIATNATSTFRSIVASYPG  298 (416)
Q Consensus       228 ~~~~~~vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~~a----~~~a~--~~~l--~nv~f~~~Da~~l~~~~~~~~~~  298 (416)
                      .++..++|=||=|.|.+....+++ +. -++.-+|+....    .+-..  ..+.  +.|.+.-+|...++...   ..+
T Consensus       119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~---~~~  194 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL---KEN  194 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh---ccC
Confidence            346789999999999999888876 42 255566642222    22111  1233  56999999999886532   368


Q ss_pred             ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHH
Q 014919          299 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL  358 (416)
Q Consensus       299 s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~  358 (416)
                      .+|+|..--+||--..    ..+++..+++.+.+.||+||++.++.|..++.....+...
T Consensus       195 ~~dVii~dssdpvgpa----~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r  250 (337)
T KOG1562|consen  195 PFDVIITDSSDPVGPA----CALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGR  250 (337)
T ss_pred             CceEEEEecCCccchH----HHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHH
Confidence            9999998888885322    2356779999999999999999999888766555544443

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=93.97  E-value=0.12  Score=48.96  Aligned_cols=75  Identities=21%  Similarity=0.220  Sum_probs=46.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEch-------HHHHHHHHHHhC-C-----CcEEEEEcChhhhhhhhhccCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-------VTHCRDSLQLSG-I-----TNGYFIATNATSTFRSIVASYP  297 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~-------~~~a~~~a~~~~-l-----~nv~f~~~Da~~l~~~~~~~~~  297 (416)
                      .+.|||.=||-|.-++-+|..  +++|+++|.       +..+++++.... .     .+++++++|+.+++.    .++
T Consensus        76 ~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~----~~~  149 (234)
T PF04445_consen   76 RPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR----QPD  149 (234)
T ss_dssp             ---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC----CHS
T ss_pred             CCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh----hcC
Confidence            468999999999999999975  679999993       345555554322 2     479999999998864    247


Q ss_pred             CceeEEEEECCCCCCCC
Q 014919          298 GKLILVSIQCPNPDFNR  314 (416)
Q Consensus       298 ~s~D~v~~~fpdpw~k~  314 (416)
                      .++|+|++   ||.|..
T Consensus       150 ~s~DVVY~---DPMFp~  163 (234)
T PF04445_consen  150 NSFDVVYF---DPMFPE  163 (234)
T ss_dssp             S--SEEEE-----S---
T ss_pred             CCCCEEEE---CCCCCC
Confidence            89999987   676543

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=93.72  E-value=0.31  Score=45.57  Aligned_cols=108  Identities=13%  Similarity=0.222  Sum_probs=69.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhc-cCCCceeEEE----E
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVS----I  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~-~~~~s~D~v~----~  305 (416)
                      .-++|||||=+......   ..+-..++.||+...           .=.+.++|..+. +  +| .+.+.||+|.    +
T Consensus        52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~-----------~~~I~qqDFm~r-p--lp~~~~e~FdvIs~SLVL  114 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ-----------HPGILQQDFMER-P--LPKNESEKFDVISLSLVL  114 (219)
T ss_pred             cceEEeecccCCCCccc---ccCceeeEEeecCCC-----------CCCceeeccccC-C--CCCCcccceeEEEEEEEE
Confidence            36899999976655443   244557999998431           113457777765 1  12 1357899884    4


Q ss_pred             EC-CCCCCCCcchhhhhhhHHHHHHHHhhccCCcE-----EEEEeC-----cHHHHH--HHHHHHHhCCCCce
Q 014919          306 QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK-----VFLQSD-----IEEVML--RMKQQFLEYGKGKL  365 (416)
Q Consensus       306 ~f-pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~-----l~l~tD-----~~~~~~--~~~~~~~~~~~~~~  365 (416)
                      || |+|       +.|   -+.++++++.|+|+|.     |++.+.     +..|+.  ...+.++..||...
T Consensus       115 NfVP~p-------~~R---G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~  177 (219)
T PF11968_consen  115 NFVPDP-------KQR---GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRV  177 (219)
T ss_pred             eeCCCH-------HHH---HHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEE
Confidence            44 454       122   3789999999999999     888753     334433  44567777787543

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=93.17  E-value=0.58  Score=47.72  Aligned_cols=116  Identities=14%  Similarity=0.194  Sum_probs=76.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHHHHH----HHHhCCCc--EEEEEcChhhhhhhhhccCCCceeEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDS----LQLSGITN--GYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a~~~----a~~~~l~n--v~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .-++||-=+|+|.=++.+|...+ ...++.-|++..|.+.    ++.+++++  +++.+.||..++.    .....||.|
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~----~~~~~fD~I  125 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY----SRQERFDVI  125 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC----HSTT-EEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh----hccccCCEE
Confidence            35899999999999999999844 4688999987666544    44567765  8999999998853    136789999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE-eCcHHHHHHH-HHHHHhCCC
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLRM-KQQFLEYGK  362 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~-tD~~~~~~~~-~~~~~~~~~  362 (416)
                      -+   ||+= .+        ..||+...+.++.||.|.+. ||...+.-.. ...+..++-
T Consensus       126 Dl---DPfG-Sp--------~pfldsA~~~v~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~  174 (377)
T PF02005_consen  126 DL---DPFG-SP--------APFLDSALQAVKDGGLLCVTATDTAVLCGSYPEKCFRKYGA  174 (377)
T ss_dssp             EE-----SS-----------HHHHHHHHHHEEEEEEEEEEE--HHHHTTSSHHHHHHHHSS
T ss_pred             Ee---CCCC-Cc--------cHhHHHHHHHhhcCCEEEEeccccccccCCChhHHHHhcCC
Confidence            77   6752 11        38999999999999999985 7876543222 234455543

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=93.02  E-value=0.083  Score=43.88  Aligned_cols=39  Identities=26%  Similarity=0.514  Sum_probs=28.1

Q ss_pred             cccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEch
Q 014919          222 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL  262 (416)
Q Consensus       222 ~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~  262 (416)
                      |....+....+..+|||||+|-..--|.+.  +..=+|+|+
T Consensus        50 W~~~~~~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~   88 (112)
T PF07757_consen   50 WRDMYGEQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA   88 (112)
T ss_pred             HhcccCCCCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence            544443334678999999999887777765  556678885

; GO: 0008168 methyltransferase activity

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=92.93  E-value=0.33  Score=46.39  Aligned_cols=69  Identities=14%  Similarity=0.122  Sum_probs=46.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ..+|+|||||.--+++......|+..|+|+|+.....+-.    ...+ .+..+...|...-     + +....|+..++
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~-~~~~~~v~Dl~~~-----~-~~~~~DlaLll  178 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG-VPHDARVRDLLSD-----P-PKEPADLALLL  178 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTS-----H-TTSEESEEEEE
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC-CCcceeEeeeecc-----C-CCCCcchhhHH
Confidence            6899999999999999888888899999999855444332    2233 3566666676543     1 46778988876

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=92.93  E-value=0.52  Score=43.44  Aligned_cols=105  Identities=16%  Similarity=0.106  Sum_probs=65.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEc---h-----HH--HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLE---L-----VT--HCRDSLQLSGITNGYFIATNATSTFRSIVASYPG  298 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD---~-----~~--~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~  298 (416)
                      .+.+|+|+=.|.|.++.-++.. -|.-.|+++=   .     ..  +....+++....|++.+-.+...+     + +++
T Consensus        48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~-----~-~pq  121 (238)
T COG4798          48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVAL-----G-APQ  121 (238)
T ss_pred             CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCccccc-----C-CCC
Confidence            4789999999999999999876 3555677764   1     11  111112234456776666655544     2 356


Q ss_pred             ceeEEEEE--CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          299 KLILVSIQ--CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       299 s~D~v~~~--fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ..|.++.+  +-|-..+.-|.   -+-..+...+++.|||||.+.+.
T Consensus       122 ~~d~~~~~~~yhdmh~k~i~~---~~A~~vna~vf~~LKPGGv~~V~  165 (238)
T COG4798         122 KLDLVPTAQNYHDMHNKNIHP---ATAAKVNAAVFKALKPGGVYLVE  165 (238)
T ss_pred             cccccccchhhhhhhccccCc---chHHHHHHHHHHhcCCCcEEEEE
Confidence            67776542  22322233231   12357788999999999998874

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=92.87  E-value=0.31  Score=41.77  Aligned_cols=76  Identities=8%  Similarity=-0.004  Sum_probs=50.3

Q ss_pred             cEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHH
Q 014919          277 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ  356 (416)
Q Consensus       277 nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~  356 (416)
                      ++.+..+|+.+.++..    +..+|.+++.   ++...+.+  .+-++++++.++++++|||.+.--|-    ...+++.
T Consensus        32 ~L~L~~gDa~~~l~~l----~~~~Da~ylD---gFsP~~nP--elWs~e~~~~l~~~~~~~~~l~Tys~----a~~Vr~~   98 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQL----DARFDAWYLD---GFSPAKNP--ELWSEELFKKLARLSKPGGTLATYSS----AGAVRRA   98 (124)
T ss_dssp             EEEEEES-HHHHHHHB-----T-EEEEEE----SS-TTTSG--GGSSHHHHHHHHHHEEEEEEEEES------BHHHHHH
T ss_pred             EEEEEEcHHHHHHHhC----cccCCEEEec---CCCCcCCc--ccCCHHHHHHHHHHhCCCcEEEEeec----hHHHHHH
Confidence            4788999998876532    4789999874   43222211  23457999999999999999876443    3347788


Q ss_pred             HHhCCCCce
Q 014919          357 FLEYGKGKL  365 (416)
Q Consensus       357 ~~~~~~~~~  365 (416)
                      |.+.||.+.
T Consensus        99 L~~aGF~v~  107 (124)
T PF05430_consen   99 LQQAGFEVE  107 (124)
T ss_dssp             HHHCTEEEE
T ss_pred             HHHcCCEEE
Confidence            999998754

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=92.87  E-value=0.54  Score=47.97  Aligned_cols=112  Identities=17%  Similarity=0.212  Sum_probs=64.4

Q ss_pred             CCeEEEEeccccHHHHHHHH--------h-------CCCCeEEEEch-----HH--HHHHHHHH------h----CCCcE
Q 014919          231 QPLVVDIGSGNGLFLLGMAR--------K-------RKDLNFLGLEL-----VT--HCRDSLQL------S----GITNG  278 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~--------~-------~p~~~~iGvD~-----~~--~a~~~a~~------~----~l~nv  278 (416)
                      .-.|+|+|||+|..++.+..        +       .|+.+++--|+     ..  +.+....+      .    .-.+-
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            45899999999987755432        1       25678887784     11  11110000      0    00112


Q ss_pred             EEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCC-cc----------hhhhh----------------h---hHHHHH
Q 014919          279 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR-PE----------HRWRM----------------V---QRSLVE  328 (416)
Q Consensus       279 ~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~-~h----------~krRl----------------~---~~~~l~  328 (416)
                      .|+.+=-..+....|  ++++++.++..+.-.|..+ +.          .|.++                .   -..||+
T Consensus       144 ~f~~gvpGSFY~RLf--P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~  221 (386)
T PLN02668        144 YFAAGVPGSFYRRLF--PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLR  221 (386)
T ss_pred             eEEEecCcccccccc--CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445556  5899999998887777532 10          11111                0   135666


Q ss_pred             HHHhhccCCcEEEEEe
Q 014919          329 AVSDLLVHDGKVFLQS  344 (416)
Q Consensus       329 ~i~r~LkpgG~l~l~t  344 (416)
                      .=++-|.|||++++..
T Consensus       222 ~Ra~ELvpGG~mvl~~  237 (386)
T PLN02668        222 ARAQEMKRGGAMFLVC  237 (386)
T ss_pred             HHHHHhccCcEEEEEE
Confidence            6677899999999874

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=92.40  E-value=0.41  Score=50.01  Aligned_cols=119  Identities=15%  Similarity=0.149  Sum_probs=73.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .-..|+|...|.|.|+.+|... |   +.-+-++..    .+.-+-..|+-.+      ..++ -+.|+..+.++|+|+.
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydRGLIG~------yhDW-CE~fsTYPRTYDLlHA  433 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDRGLIGV------YHDW-CEAFSTYPRTYDLLHA  433 (506)
T ss_pred             ceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhcccchh------ccch-hhccCCCCcchhheeh
Confidence            3578999999999999999764 3   222222221    1111112333111      1111 3345667899999986


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      ..-   +..-  +.|-.-...|-++-|+|+|+|.+++. |..+..+.+..++....|...
T Consensus       434 ~~l---fs~~--~~rC~~~~illEmDRILRP~G~~iiR-D~~~vl~~v~~i~~~lrW~~~  487 (506)
T PF03141_consen  434 DGL---FSLY--KDRCEMEDILLEMDRILRPGGWVIIR-DTVDVLEKVKKIAKSLRWEVR  487 (506)
T ss_pred             hhh---hhhh--cccccHHHHHHHhHhhcCCCceEEEe-ccHHHHHHHHHHHHhCcceEE
Confidence            522   1111  11122258899999999999999996 677788888888888777643

; GO: 0008168 methyltransferase activity

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.29  E-value=2.2  Score=35.13  Aligned_cols=98  Identities=16%  Similarity=0.096  Sum_probs=64.0

Q ss_pred             ccccHHHHHHHHhC--CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcc
Q 014919          239 SGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE  316 (416)
Q Consensus       239 CG~G~~~~~lA~~~--p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h  316 (416)
                      ||.|.++..+++..  .+..++.+|......+.+...+   +.++.+|+.+. ..+-...-...+.+++..++.     .
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~---~~~i~gd~~~~-~~l~~a~i~~a~~vv~~~~~d-----~   74 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG---VEVIYGDATDP-EVLERAGIEKADAVVILTDDD-----E   74 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT---SEEEES-TTSH-HHHHHTTGGCESEEEEESSSH-----H
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc---cccccccchhh-hHHhhcCccccCEEEEccCCH-----H
Confidence            77788888888753  2347999998776666666655   67899999874 211111235688888775432     0


Q ss_pred             hhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHH
Q 014919          317 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVML  351 (416)
Q Consensus       317 ~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~  351 (416)
                            ..-.+....+.+.|...++...+...+.+
T Consensus        75 ------~n~~~~~~~r~~~~~~~ii~~~~~~~~~~  103 (116)
T PF02254_consen   75 ------ENLLIALLARELNPDIRIIARVNDPENAE  103 (116)
T ss_dssp             ------HHHHHHHHHHHHTTTSEEEEEESSHHHHH
T ss_pred             ------HHHHHHHHHHHHCCCCeEEEEECCHHHHH
Confidence                  11345566777889999999888877644

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=91.92  E-value=0.48  Score=41.69  Aligned_cols=104  Identities=14%  Similarity=0.136  Sum_probs=54.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      ..-|||+|-|+|..--.|-+.+|+..++.+|....+.--+   -.+.=.++.+|+.+.++. .+........++.-+--.
T Consensus        29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~---~P~~~~~ilGdi~~tl~~-~~~~g~~a~laHaD~G~g  104 (160)
T PF12692_consen   29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSS---TPPEEDLILGDIRETLPA-LARFGAGAALAHADIGTG  104 (160)
T ss_dssp             -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG------GGGEEES-HHHHHHH-HHHH-S-EEEEEE----S
T ss_pred             CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCC---CCchHheeeccHHHHhHH-HHhcCCceEEEEeecCCC
Confidence            4679999999999999999999999999999633222111   112235789999988764 211234555555442111


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                         .+ .|.-..-..+-..+..+|.|||.++-
T Consensus       105 ---~~-~~d~a~a~~lspli~~~la~gGi~vS  132 (160)
T PF12692_consen  105 ---DK-EKDDATAAWLSPLIAPVLAPGGIMVS  132 (160)
T ss_dssp             ----H-HHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ---Cc-chhHHHHHhhhHHHHHHhcCCcEEEe
Confidence               00 11111112334567889999998763

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=91.83  E-value=0.51  Score=39.67  Aligned_cols=86  Identities=13%  Similarity=0.137  Sum_probs=59.9

Q ss_pred             cccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChh---hhhhhhhccCCCceeEEEEECCCCCCCCcc
Q 014919          240 GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNAT---STFRSIVASYPGKLILVSIQCPNPDFNRPE  316 (416)
Q Consensus       240 G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~---~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h  316 (416)
                      |.|..++.+|+... .+++++|.++.-++.+++.|.+.+  +..+-.   +-+.+..  ....+|.++-.-..       
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~--~~~~~~~~~~~i~~~~--~~~~~d~vid~~g~-------   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHV--IDYSDDDFVEQIRELT--GGRGVDVVIDCVGS-------   68 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEE--EETTTSSHHHHHHHHT--TTSSEEEEEESSSS-------
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhccccc--cccccccccccccccc--ccccceEEEEecCc-------
Confidence            56889999999987 999999988777777777775432  233222   2223333  23479988654221       


Q ss_pred             hhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          317 HRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       317 ~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                             +..++....+|+|+|++.+..
T Consensus        69 -------~~~~~~~~~~l~~~G~~v~vg   89 (130)
T PF00107_consen   69 -------GDTLQEAIKLLRPGGRIVVVG   89 (130)
T ss_dssp             -------HHHHHHHHHHEEEEEEEEEES
T ss_pred             -------HHHHHHHHHHhccCCEEEEEE
Confidence                   377889999999999999864

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=91.65  E-value=1.2  Score=45.13  Aligned_cols=114  Identities=12%  Similarity=0.081  Sum_probs=63.2

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-CCCcEEEEEcC-hhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GITNGYFIATN-ATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-~l~nv~f~~~D-a~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+..||.+|||. |..+..+|+.....+++++|....-.+.+++. +...+.+...+ ...-+....  ....+|.++-.
T Consensus       184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~--~~~~~D~vld~  261 (386)
T cd08283         184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELT--GGRGPDVCIDA  261 (386)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHc--CCCCCCEEEEC
Confidence            367899999998 99999999998655699999765555555554 33212222221 111111111  23358877532


Q ss_pred             CC-----CCCCCCcchh--hhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          307 CP-----NPDFNRPEHR--WRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       307 fp-----dpw~k~~h~k--rRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      ..     .+|.+-..+.  .+--....+++..+.|+++|++.+...
T Consensus       262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            11     1111100000  000013567888999999999987643

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=91.47  E-value=0.59  Score=46.82  Aligned_cols=90  Identities=13%  Similarity=0.166  Sum_probs=62.4

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc-ChhhhhhhhhccCCCceeEEEEECC
Q 014919          231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~-Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      +..|+=+|+| -|..++.+|+..- ++++++|.+..-++.+++.|.+.  ++.. |.... ...    .+.+|.++..-+
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~--~i~~~~~~~~-~~~----~~~~d~ii~tv~  238 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADH--VINSSDSDAL-EAV----KEIADAIIDTVG  238 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcE--EEEcCCchhh-HHh----HhhCcEEEECCC
Confidence            5666666665 6778899999764 99999999888777777777653  3332 22222 111    234898876543


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                       +              ..++.+.+.|++||++.+.
T Consensus       239 -~--------------~~~~~~l~~l~~~G~~v~v  258 (339)
T COG1064         239 -P--------------ATLEPSLKALRRGGTLVLV  258 (339)
T ss_pred             -h--------------hhHHHHHHHHhcCCEEEEE
Confidence             3              4578889999999999886

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=91.34  E-value=1.7  Score=43.80  Aligned_cols=103  Identities=13%  Similarity=0.159  Sum_probs=80.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ..+|+|-=||+|.=++.+|..-+...++.-|++..|.+.+++    +...+...+..|+..++.+    ....||.|-+ 
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~----~~~~fd~IDi-  127 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE----LHRAFDVIDI-  127 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh----cCCCccEEec-
Confidence            578999999999999999999887799999998877665543    3355677778999988643    2367898866 


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE-eCcHHH
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEV  349 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~-tD~~~~  349 (416)
                        ||+= .+        ..|++...+..+.||.+.+. ||...+
T Consensus       128 --DPFG-SP--------aPFlDaA~~s~~~~G~l~vTATD~a~L  160 (380)
T COG1867         128 --DPFG-SP--------APFLDAALRSVRRGGLLCVTATDTAPL  160 (380)
T ss_pred             --CCCC-CC--------chHHHHHHHHhhcCCEEEEEecccccc
Confidence              6652 11        28999999999999999985 776544

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=91.12  E-value=0.59  Score=43.11  Aligned_cols=101  Identities=19%  Similarity=0.274  Sum_probs=61.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|.|+|--.+.-|+.- ...++..|+...+.+.    ++.++ -++.|...|..-        .+..+|++..
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~ang-v~i~~~~~d~~g--------~~~~~Dl~La  148 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANG-VSILFTHADLIG--------SPPAFDLLLA  148 (218)
T ss_pred             ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhcc-ceeEEeeccccC--------CCcceeEEEe
Confidence            36899999999999988877763 4567888864333332    33333 468888877643        3678999875


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcE-EEEEeCcHHH
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK-VFLQSDIEEV  349 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~-l~l~tD~~~~  349 (416)
                      .  |-.+....      ...++. +.+.|+..|. +++-+.+..|
T Consensus       149 g--Dlfy~~~~------a~~l~~-~~~~l~~~g~~vlvgdp~R~~  184 (218)
T COG3897         149 G--DLFYNHTE------ADRLIP-WKDRLAEAGAAVLVGDPGRAY  184 (218)
T ss_pred             e--ceecCchH------HHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence            4  43332221      124555 5555555554 4444445444

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=90.83  E-value=1  Score=44.58  Aligned_cols=75  Identities=13%  Similarity=0.017  Sum_probs=52.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC---CCcEEEEEcChhhhhhhhhc-c-CCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVA-S-YPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~---l~nv~f~~~Da~~l~~~~~~-~-~~~s~D~v~  304 (416)
                      .+.++||-=.|.|.++..+.++.|+..++|+|....|++.+.+.-   -+++.+++++..++. +.+. . ....+|.|.
T Consensus        20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~-~~l~~~~~~~~~dgiL   98 (310)
T PF01795_consen   20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLD-EYLKELNGINKVDGIL   98 (310)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHH-HHHHHTTTTS-EEEEE
T ss_pred             CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHH-HHHHHccCCCccCEEE
Confidence            467999999999999999999999999999998888887665321   357999999998873 3322 1 235788886


Q ss_pred             E
Q 014919          305 I  305 (416)
Q Consensus       305 ~  305 (416)
                      +
T Consensus        99 ~   99 (310)
T PF01795_consen   99 F   99 (310)
T ss_dssp             E
T ss_pred             E
Confidence            4

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=90.74  E-value=2.3  Score=41.42  Aligned_cols=123  Identities=15%  Similarity=0.081  Sum_probs=66.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ....|||+|||.|..+.+....+| -.+++.+|.+..+++.++.  ....+..-.. ....+..+..+  -..-|+|++.
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~--~~~~DLvi~s  109 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAE-WRRVLYRDFLP--FPPDDLVIAS  109 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccch-hhhhhhccccc--CCCCcEEEEe
Confidence            467899999999998888877776 3479999977666554332  1112111100 00001011111  1223998877


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe-Cc---HHHHHHHHHHHHhCCCC
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DI---EEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t-D~---~~~~~~~~~~~~~~~~~  363 (416)
                      |.---...   ..|   ..+++.+.+.+.+  .|++.- -.   ......+++.+.+.++.
T Consensus       110 ~~L~EL~~---~~r---~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~  162 (274)
T PF09243_consen  110 YVLNELPS---AAR---AELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAH  162 (274)
T ss_pred             hhhhcCCc---hHH---HHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCc
Confidence            64322211   112   3677777777766  555542 12   22344556677666654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=89.87  E-value=2.7  Score=40.31  Aligned_cols=106  Identities=21%  Similarity=0.241  Sum_probs=62.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEch--HHHHHHHH-H-----HhCCC-cEE---EEEcChhhhhhhhhccCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL--VTHCRDSL-Q-----LSGIT-NGY---FIATNATSTFRSIVASYPG  298 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~--~~~a~~~a-~-----~~~l~-nv~---f~~~Da~~l~~~~~~~~~~  298 (416)
                      ...+||+|.|+|--++..|.. ...+|+--|.  +...++.. .     .+++. ++.   +..+++... ....   +.
T Consensus        87 ~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~-~~~~---~~  161 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALL-LGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDV-SFRL---PN  161 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHH-hcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccH-hhcc---CC
Confidence            568999999999666666654 4678888884  11122111 1     11111 221   223333322 1122   12


Q ss_pred             ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919          299 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  349 (416)
Q Consensus       299 s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~  349 (416)
                      .+|.|...  |+|....+.      +.++..++..|..++.+++.+.-.+-
T Consensus       162 ~~Dlilas--Dvvy~~~~~------e~Lv~tla~ll~~~~~i~l~~~lr~~  204 (248)
T KOG2793|consen  162 PFDLILAS--DVVYEEESF------EGLVKTLAFLLAKDGTIFLAYPLRRD  204 (248)
T ss_pred             cccEEEEe--eeeecCCcc------hhHHHHHHHHHhcCCeEEEEEecccc
Confidence            28988876  777655433      47888899999999999888865553

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=89.81  E-value=3.8  Score=41.33  Aligned_cols=114  Identities=15%  Similarity=0.098  Sum_probs=69.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCC---CeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhh-h----ccC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKD---LNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSI-V----ASY  296 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~---~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~-~----~~~  296 (416)
                      .+.+|||++...|.-+..|.+. +++   -.+++=|...    ..++......-.|+.+...|+..+ +.. .    +..
T Consensus       155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~-p~~~~~~~~~~~  233 (375)
T KOG2198|consen  155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLF-PNIYLKDGNDKE  233 (375)
T ss_pred             CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceec-cccccccCchhh
Confidence            3789999999999999888775 322   2688888522    112222233345666666666654 211 1    112


Q ss_pred             CCceeEEEEECC---CCCCCCc-------chhhh-----hhhHHHHHHHHhhccCCcEEEEEe
Q 014919          297 PGKLILVSIQCP---NPDFNRP-------EHRWR-----MVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       297 ~~s~D~v~~~fp---dpw~k~~-------h~krR-----l~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ...||.|.+--|   |.|+.+.       ..+.|     .+|-.+|..-.+.||+||++.-+|
T Consensus       234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST  296 (375)
T KOG2198|consen  234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST  296 (375)
T ss_pred             hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence            245888876532   3332211       11112     246688999999999999999987

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=88.04  E-value=1.9  Score=41.42  Aligned_cols=99  Identities=14%  Similarity=0.152  Sum_probs=56.7

Q ss_pred             CCeEEEEeccccHHHHHHHHh-----CCCCeEEEEch--------H------------------HHHHHHHH----HhCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARK-----RKDLNFLGLEL--------V------------------THCRDSLQ----LSGI  275 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~-----~p~~~~iGvD~--------~------------------~~a~~~a~----~~~l  275 (416)
                      ...++|.||=.|..++.++..     .++.++++.|.        .                  ....+..+    +.++
T Consensus        75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl  154 (248)
T PF05711_consen   75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL  154 (248)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred             CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence            578999999999887665432     35778999992        0                  00122222    2233


Q ss_pred             --CcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          276 --TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       276 --~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                        +|++|+.+...+.++..   +...+.++++-. |-+  .       -....|+.++..|.|||.+++
T Consensus       155 ~~~~v~~vkG~F~dTLp~~---p~~~IAll~lD~-DlY--e-------sT~~aLe~lyprl~~GGiIi~  210 (248)
T PF05711_consen  155 LDDNVRFVKGWFPDTLPDA---PIERIALLHLDC-DLY--E-------STKDALEFLYPRLSPGGIIIF  210 (248)
T ss_dssp             SSTTEEEEES-HHHHCCC----TT--EEEEEE----SH--H-------HHHHHHHHHGGGEEEEEEEEE
T ss_pred             CcccEEEECCcchhhhccC---CCccEEEEEEec-cch--H-------HHHHHHHHHHhhcCCCeEEEE
Confidence              58999999998765421   245566565532 211  0       013779999999999999998

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=86.40  E-value=3.4  Score=43.66  Aligned_cols=114  Identities=18%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC----CCeEEEEchHHHHH----HHHHHhCCC-cEEEEEcChhhhhhhhh--ccCCCc
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK----DLNFLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIV--ASYPGK  299 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p----~~~~iGvD~~~~a~----~~a~~~~l~-nv~f~~~Da~~l~~~~~--~~~~~s  299 (416)
                      ..+|.|-.||+|.++...++...    +..++|.|+.....    .+.--++.. ++....+|...- + ..  ....+.
T Consensus       187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~-~-~~~~~~~~~~  264 (489)
T COG0286         187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN-P-KHDDKDDKGK  264 (489)
T ss_pred             CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccC-C-cccccCCccc
Confidence            45899999999999888776542    37899999644333    333345555 455555554332 1 11  002356


Q ss_pred             eeEEEEECCCC---CCCCc----chhhhh---------hh-HHHHHHHHhhccCCcEEEEEeCc
Q 014919          300 LILVSIQCPNP---DFNRP----EHRWRM---------VQ-RSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       300 ~D~v~~~fpdp---w~k~~----h~krRl---------~~-~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      ||.|..|-|..   |-...    ...++.         -. ..|++.+...|+|||+..+....
T Consensus       265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~  328 (489)
T COG0286         265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD  328 (489)
T ss_pred             eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence            99998874332   22110    000000         01 58999999999999876665433

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=85.49  E-value=5.3  Score=38.18  Aligned_cols=101  Identities=15%  Similarity=0.172  Sum_probs=67.1

Q ss_pred             CCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHHHHH-H-HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          231 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSL-Q-LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~~~a-~-~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      +..||=+|.++|......+.- -|+--+++||.+..+-+.+ . ...-+||--+..||+.-....+  .-+-+|+||...
T Consensus       157 GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRm--lVgmVDvIFaDv  234 (317)
T KOG1596|consen  157 GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRM--LVGMVDVIFADV  234 (317)
T ss_pred             CceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheee--eeeeEEEEeccC
Confidence            789999999999998888775 5888999999754332211 1 2345799999999986411111  134688887654


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +.|-      .-|+    +.-.....||+||.+.++
T Consensus       235 aqpd------q~Ri----vaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  235 AQPD------QARI----VALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             CCch------hhhh----hhhhhhhhhccCCeEEEE
Confidence            4441      1122    233466789999998875

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=85.08  E-value=5.9  Score=39.07  Aligned_cols=74  Identities=14%  Similarity=0.047  Sum_probs=54.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCC-eEEEEchHHHHHHHHHHhC---CCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~-~~iGvD~~~~a~~~a~~~~---l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ..+++|.=.|.|.++..+.++.|+. +++|+|....|++.+++.-   -.++.+++++..++....-....+.+|.|.
T Consensus        24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vDGiL  101 (314)
T COG0275          24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVDGIL  101 (314)
T ss_pred             CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCceeEEE
Confidence            5899999999999999999998865 5999998777776665422   258999999998873221111235677764

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=84.57  E-value=5.8  Score=39.81  Aligned_cols=109  Identities=17%  Similarity=0.211  Sum_probs=55.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHh----------------CCCCeEEEEch-----H------HHHHHHHHHhCCCcEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK----------------RKDLNFLGLEL-----V------THCRDSLQLSGITNGYFIA  282 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~----------------~p~~~~iGvD~-----~------~~a~~~a~~~~l~nv~f~~  282 (416)
                      ..-+|+|+||..|..++.+...                -|+.+++--|+     .      ..-.+....  ..++ |..
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~--~~~~-f~~   92 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK--FRNY-FVS   92 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH--TTSE-EEE
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC--CceE-EEE
Confidence            3568999999999998876542                13457777773     1      111111111  2232 333


Q ss_pred             cChhhhhhhhhccCCCceeEEEEECCCCCCCC-cc----------hhhhh---------h-----------hHHHHHHHH
Q 014919          283 TNATSTFRSIVASYPGKLILVSIQCPNPDFNR-PE----------HRWRM---------V-----------QRSLVEAVS  331 (416)
Q Consensus       283 ~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~-~h----------~krRl---------~-----------~~~~l~~i~  331 (416)
                      +=-..+....|  +++|+|.++..+.-.|..+ +.          +|.++         +           -..||+.=+
T Consensus        93 gvpgSFy~rLf--P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra  170 (334)
T PF03492_consen   93 GVPGSFYGRLF--PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARA  170 (334)
T ss_dssp             EEES-TTS--S---TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCchhhhccC--CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            32233334456  5899999998887777432 00          11111         1           124566667


Q ss_pred             hhccCCcEEEEE
Q 014919          332 DLLVHDGKVFLQ  343 (416)
Q Consensus       332 r~LkpgG~l~l~  343 (416)
                      +-|+|||++++.
T Consensus       171 ~ELv~GG~mvl~  182 (334)
T PF03492_consen  171 EELVPGGRMVLT  182 (334)
T ss_dssp             HHEEEEEEEEEE
T ss_pred             heeccCcEEEEE
Confidence            789999999886

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=83.98  E-value=1.7  Score=45.30  Aligned_cols=105  Identities=13%  Similarity=0.178  Sum_probs=75.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCC-eEEEEchHHHHHHH----HHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDL-NFLGLELVTHCRDS----LQLSGITN-GYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~-~~iGvD~~~~a~~~----a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      +..+|||.=|++|.-++..|+..|+. .+++-|.+.++.+.    ++.++.++ |...+.|+..++-.. +-....||+|
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~-~~~~~~FDvI  187 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH-PMVAKFFDVI  187 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhc-cccccccceE
Confidence            35789999999999999999998874 67788876665543    33344443 677788887764211 1124689999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE-eCcH
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIE  347 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~-tD~~  347 (416)
                      -+   ||+=..         ..||+...+.++.||.|.+. ||..
T Consensus       188 DL---DPyGs~---------s~FLDsAvqav~~gGLL~vT~TD~a  220 (525)
T KOG1253|consen  188 DL---DPYGSP---------SPFLDSAVQAVRDGGLLCVTCTDMA  220 (525)
T ss_pred             ec---CCCCCc---------cHHHHHHHHHhhcCCEEEEEecchH
Confidence            76   776222         38999999999999999985 6654

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=83.80  E-value=2  Score=42.50  Aligned_cols=31  Identities=19%  Similarity=0.179  Sum_probs=25.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL  262 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~  262 (416)
                      ....||==|||.|+++..||...+.+  -|=|.
T Consensus       150 ~ki~iLvPGaGlGRLa~dla~~G~~~--qGNEf  180 (369)
T KOG2798|consen  150 TKIRILVPGAGLGRLAYDLACLGFKC--QGNEF  180 (369)
T ss_pred             cCceEEecCCCchhHHHHHHHhcccc--cccHH
Confidence            36889999999999999999997654  45574

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=82.70  E-value=11  Score=36.79  Aligned_cols=95  Identities=12%  Similarity=0.101  Sum_probs=58.1

Q ss_pred             CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc-ChhhhhhhhhccCCCceeEEEEECC
Q 014919          231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~-Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      +..+|..||| .|..++.+|+.. +.+++.++.+..-.+.++..+.+.+...+. +..+.+ ...  ....+|.++-. .
T Consensus       166 ~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~--~~~~~D~vid~-~  240 (338)
T cd08254         166 GETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKK-AAG--LGGGFDVIFDF-V  240 (338)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHH-HHh--cCCCceEEEEC-C
Confidence            5677778887 488888899876 567899987655555555556543221111 111111 111  34568877532 1


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ..             ...+++..+.|+++|++...
T Consensus       241 g~-------------~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         241 GT-------------QPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             CC-------------HHHHHHHHHHhhcCCEEEEE
Confidence            11             25678889999999998864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=81.88  E-value=20  Score=34.60  Aligned_cols=110  Identities=10%  Similarity=0.041  Sum_probs=65.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC----CeEEEEchHHHHHH-----HHHHhCCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKD----LNFLGLELVTHCRD-----SLQLSGITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~----~~~iGvD~~~~a~~-----~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      ....+|+|.|+-.-+..|...+..    ..|+.+|+++..++     .+.+...-.+.-+++|...-+.+    .++.=.
T Consensus        79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~----~~~~~~  154 (321)
T COG4301          79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAE----LPRGGR  154 (321)
T ss_pred             cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhc----ccCCCe
Confidence            578999999999887776655443    78999997543322     22222111366677777654322    122223


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  348 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~  348 (416)
                      .++++ +-.-..+-.+..   ...||..+...|+||-++.+-+|...
T Consensus       155 Rl~~f-lGStlGN~tp~e---~~~Fl~~l~~a~~pGd~~LlGvDl~k  197 (321)
T COG4301         155 RLFVF-LGSTLGNLTPGE---CAVFLTQLRGALRPGDYFLLGVDLRK  197 (321)
T ss_pred             EEEEE-ecccccCCChHH---HHHHHHHHHhcCCCcceEEEeccccC
Confidence            34332 211111111111   14899999999999999999887643

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=80.10  E-value=2.4  Score=41.06  Aligned_cols=59  Identities=10%  Similarity=0.145  Sum_probs=40.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-----CCCeEEEEch-HHH--HHHHHHHhCC-CcEEEEEcChhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-----KDLNFLGLEL-VTH--CRDSLQLSGI-TNGYFIATNATST  288 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-----p~~~~iGvD~-~~~--a~~~a~~~~l-~nv~f~~~Da~~l  288 (416)
                      +...++|+|||.|.++..+++..     +...|+-||. +.+  +-.+...... ..++=++.|+.++
T Consensus        18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl   85 (259)
T PF05206_consen   18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDL   85 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeecc
Confidence            35799999999999999999987     5679999995 211  1111111111 3566777888776

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	416
1vpe_A	398	Crystallographic Analysis Of Phosphoglycerate Kinas		2e-21
13pk_A	415	Ternary Complex Of Phosphoglycerate Kinase From Try		4e-21
3uwd_A	394	Crystal Structure Of Phosphoglycerate Kinase From B		7e-20
2ie8_A	390	Crystal Structure Of Thermus Caldophilus Phosphogly		2e-17
1v6s_A	390	Crystal Structure Of Phosphoglycerate Kinase From T		2e-17
1php_A	394	Structure Of The Adp Complex Of The 3-Phosphoglycer		3e-17
2y3i_A	416	The Structure Of The Fully Closed Conformation Of H		7e-17
2xe6_A	417	The Complete Reaction Cycle Of Human Phosphoglycera		7e-17
2wzb_A	416	The Catalytically Active Fully Closed Conformation		8e-17
2zgv_A	420	Crystal Structure Of Human Phosphoglycerate Kinase		8e-17
1vjc_A	416	Structure Of Pig Muscle Pgk Complexed With Mgatp Le		9e-17
1qpg_A	415	3-Phosphoglycerate Kinase, Mutation R65q Length = 4		1e-16
1fw8_A	416	Circularly Permuted Phosphoglycerate Kinase From Ye		1e-16
3oz7_A	417	Crystal Structure Of 3-Phosphopglycerate Kinase Of		1e-16
1kf0_A	416	Crystal Structure Of Pig Muscle Phosphoglycerate Ki		2e-16
2x14_A	416	The Catalytically Active Fully Closed Conformation		3e-16
2wzd_A	417	The Catalytically Active Fully Closed Conformation		3e-16
4dg5_A	403	Crystal Structure Of Staphylococcal Phosphoglycerat		7e-16
1hdi_A	413	Pig Muscle 3-Phosphoglycerate Kinase Complexed With		8e-16
3pgk_A	416	The Structure Of Yeast Phosphoglycerate Kinase At 0		2e-15
3q3v_A	403	Crystal Structure Of Phosphoglycerate Kinase From C		4e-15
3oza_A	424	Crystal Structure Of Plasmodium Falciparum 3-Phosph		4e-15
1ltk_A	425	Crystal Structure Of Phosphoglycerate Kinase From P		5e-15
2p9q_A	416	Crystal Structure Of Phosphoglycerate Kinase-2 Leng		2e-14
4fey_A	395	An X-Ray Structure Of A Putative Phosphogylcerate K		2e-09
4ehj_A	392	An X-Ray Structure Of A Putative Phosphogylcerate K		2e-09
3ckk_A	235	Crystal Structure Of Human Methyltransferase-Like P		5e-06
1zmr_A	387	Crystal Structure Of The E. Coli Phosphoglycerate K		1e-05
2fca_A	213	The Structure Of Bstrmb Length = 213		3e-05
3dxx_A	218	Crystal Structure Of Ectrmb Length = 218		6e-05
1yzh_A	214	Crystal Structure Of The Conserved Hypothetical Pro		2e-04

>pdb|1VPE|A Chain A, Crystallographic Analysis Of Phosphoglycerate Kinase From The Hyperthermophilic Bacterium Thermotoga Maritima Length = 398

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 12/214 (5%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           EKPY  ++GG  + +K   +  L  + D ++  G M F  + ALG  V    VE+   D 
Sbjct: 185 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 244
Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
           A +L++ A++K + I+ P D    +   P   +  +    GIP+GW  +DIGP ++E   
Sbjct: 245 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 304
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
             ++  K V+W GP+       ++ G  ++   +  +++      V G  +  A+ K   
Sbjct: 305 QKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNK--- 361
Query: 184 SIFGL-----NMVESGSAVWEFLKGRMLPGVSAL 212
             FGL     ++   G A  EFL+G+ LPG++++
Sbjct: 362 --FGLEDKFSHVSTGGGASLEFLEGKELPGIASM 393

>pdb|13PK|A Chain A, Ternary Complex Of Phosphoglycerate Kinase From Trypanosoma Brucei Length = 415

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 2/209 (0%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
           +P  AI+GG  + +K   L  +  R D L+  G M++  + A G  +     E+   + A
Sbjct: 205 RPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFA 264
Query: 67  SDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
             L++ A D+ + ++ P D  C T+    +   I     IP+G   +DIGP+++E+   T
Sbjct: 265 RSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQT 324
Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSI 185
           I KCK  IW GP+       YS G   +   + + +     +++IG     + A++S   
Sbjct: 325 IGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEA 384
Query: 186 FGLNMVES-GSAVWEFLKGRMLPGVSALD 213
             ++ V + G A  E L+G+ LPGV+ LD
Sbjct: 385 KRMSHVSTGGGASLELLEGKTLPGVTVLD 413

>pdb|3UWD|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Bacillus Anthracis Length = 394

Iteration: 1
 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 3/209 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+P+AAIIGG  + +K   +  L  + D LI  G +++  + ALG  +   L E    + 
Sbjct: 186 ERPFAAIIGGAKVKDKIGLIRHLLDKVDNLIIGGGLAYTFVKALGHEIGLSLCEDDKIEL 245
Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A +  Q A++K +    P D   T +       +I     IP  WE VDIGP++ E    
Sbjct: 246 AKEFXQLAKEKGVNFYXPVDVVITEEFSETATTKIVGIDSIPSNWEGVDIGPKTREIYAD 305
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            I   K V+W GP      + ++ G +K  G     ++GT +V + G  +  A+ K   +
Sbjct: 306 VIKNSKLVVWNGPXGVFEXTPFAEG-TKAVGQALADAEGTYSV-IGGGDSAAAVEKFGXA 363
Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALD 213
               ++   G A  EF +G+ LPGV  L+
Sbjct: 364 DKXSHISTGGGASLEFXEGKELPGVVCLN 392

>pdb|2IE8|A Chain A, Crystal Structure Of Thermus Caldophilus Phosphoglycerate Kinase In The Open Conformation Length = 390

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 5/210 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+PYA ++GG  + +K   +  L  R D L+  G M+F  + ALG  V   LVE+   D 
Sbjct: 183 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 242
Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A DL+  A    + +  P+D     +I    +  +FP+  IP  +  +DIGP++ E    
Sbjct: 243 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 302
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS-S 183
            +   + V W GP+       +  G +   G      +G   V V G  +  A+ ++   
Sbjct: 303 ALEGARTVFWNGPMGVFEVPPFDEG-TLAVGQAIAALEGAFTV-VGGGDSVAAVNRLGLK 360
Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALD 213
             FG ++   G A  EFL+   LPG+  L+
Sbjct: 361 ERFG-HVSTGGGASLEFLEKGTLPGLEVLE 389

>pdb|1V6S|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Thermus Thermophilus Hb8 Length = 390

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 5/210 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+PYA ++GG  + +K   +  L  R D L+  G M+F  + ALG  V   LVE+   D 
Sbjct: 183 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 242
Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A DL+  A    + +  P+D     +I    +  +FP+  IP  +  +DIGP++ E    
Sbjct: 243 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 302
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS-S 183
            +   + V W GP+       +  G +   G      +G   V V G  +  A+ ++   
Sbjct: 303 ALEGARTVFWNGPMGVFEVPPFDEG-TLAVGQAIAALEGAFTV-VGGGDSVAAVNRLGLK 360
Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALD 213
             FG ++   G A  EFL+   LPG+  L+
Sbjct: 361 ERFG-HVSTGGGASLEFLEKGTLPGLEVLE 389

>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate Kinase From Bacillus Stearothermophilus At 1.65 Angstroms Length = 394

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 3/209 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+ AIIGG  + +K   +  L  + D LI  G +++  + ALG  V   L+E+   + 
Sbjct: 186 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIEL 245
Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A   ++ A++K +    P D     +  +    ++ P   IP  W  +DIGP++ E    
Sbjct: 246 AKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRD 305
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            I + K V+W GP+       +++G +K        +  T +V + G  +  A+ K   +
Sbjct: 306 VIRESKLVVWNGPMGVFEMDAFAHG-TKAIAEALAEALDTYSV-IGGGDSAAAVEKFGLA 363
Query: 185 IFGLNMVESGSAVWEFLKGRMLPGVSALD 213
               ++   G A  EF++G+ LPGV AL+
Sbjct: 364 DKMDHISTGGGASLEFMEGKQLPGVVALE 392

>pdb|2Y3I|A Chain A, The Structure Of The Fully Closed Conformation Of Human Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium Tetrafluoride Length = 416

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 205 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 264
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 265 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 324
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              +T+ K+++W GPV       ++ G   L   + K +   C   + G       AK +
Sbjct: 325 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 384
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           +     ++   G A  E L+G++LPGV AL
Sbjct: 385 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 414

>pdb|2XE6|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate Kinase: The Open Binary Complex With 3pg Length = 417

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 205 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 264
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 265 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 324
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              +T+ K+++W GPV       ++ G   L   + K +   C   + G       AK +
Sbjct: 325 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 384
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           +     ++   G A  E L+G++LPGV AL
Sbjct: 385 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 414

>pdb|2WZB|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase In Complex With Adp, 3pg And Magnesium Trifluoride Length = 416

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              +T+ K+++W GPV       ++ G   L   + K +   C   + G       AK +
Sbjct: 324 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 383
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           +     ++   G A  E L+G++LPGV AL
Sbjct: 384 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 413

>pdb|2ZGV|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound To D-Adp Length = 420

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 208 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 267
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 268 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 327
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              +T+ K+++W GPV       ++ G   L   + K +   C   + G       AK +
Sbjct: 328 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 387
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           +     ++   G A  E L+G++LPGV AL
Sbjct: 388 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 417

>pdb|1VJC|A Chain A, Structure Of Pig Muscle Pgk Complexed With Mgatp Length = 416

Iteration: 1
 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 3/210 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++  + 
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGSK 263
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
           +  + + K+++W GPV       ++ G   L   + K +   C   + G       AK +
Sbjct: 324 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 383
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           +     ++   G A  E L+G++LPGV AL
Sbjct: 384 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 413

>pdb|1QPG|A Chain A, 3-Phosphoglycerate Kinase, Mutation R65q Length = 415

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 5/210 (2%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
           +P+ AI+GG  + +K   +  L  + D +I  G M+F     L    +   + +K   + 
Sbjct: 203 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEI 262
Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
              L++ A+ K + ++ P DF          N   +    GIP GW+ +D GP S +   
Sbjct: 263 VPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFA 322
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
           +T+ K K ++W GP       +++ G   L   + K S    N  +IG      +AK   
Sbjct: 323 ATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNTVIIGGGDTATVAKKYG 381
Query: 184 SIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
               ++ V + G A  E L+G+ LPGV+ L
Sbjct: 382 VTDKISHVSTGGGASLELLEGKELPGVAFL 411

>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast: Pgk P72 Length = 416

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 5/210 (2%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
           +P+ AI+GG  + +K   +  L  + D +I  G M+F     L    +   + +K   + 
Sbjct: 133 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEI 192
Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
              L++ A+ K + ++ P DF          N   +    GIP GW+ +D GP S +   
Sbjct: 193 VPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFA 252
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
           +T+ K K ++W GP       +++ G   L   + K S    N  +IG      +AK   
Sbjct: 253 ATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNTVIIGGGDTATVAKKYG 311
Query: 184 SIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
               ++ V + G A  E L+G+ LPGV+ L
Sbjct: 312 VTDKISHVSTGGGASLELLEGKELPGVAFL 341

>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of Plasmodium Falciparum Length = 417

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 5/211 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           ++P  AI+GG  + +K   +  L  + D +I  G M++     L  + +   L ++  + 
Sbjct: 206 QRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSK 265
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPS--HGIPDGWEPVDIGPRSVEEI 122
              ++++ A+ K++ I  P DF        N    F +   GIPD W  +D GP+S+E  
Sbjct: 266 IVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENY 325
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              I   K VIW GP        ++ G+ +   ++ +V++    +T++G     ++ +  
Sbjct: 326 KDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQQ 384
Query: 183 SSIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
           +    ++ V + G A  E L+G+ LPGV AL
Sbjct: 385 NKKNEISHVSTGGGASLELLEGKELPGVLAL 415

>pdb|1KF0|A Chain A, Crystal Structure Of Pig Muscle Phosphoglycerate Kinase Ternary Complex With Amp-Pcp And 3pg Length = 416

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 3/210 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65  AASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
              +L+  A    + I  P DF        H    +   + GIP GW  +D GP S ++ 
Sbjct: 264 IVKNLMSKAEKNGVKITLPVDFVTADKFDEHAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
           +  + + K+++W GPV       ++ G   L   + K +   C   + G       AK +
Sbjct: 324 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 383
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           +     ++   G A  E L+G++LPGV AL
Sbjct: 384 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 413

>pdb|2X14|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase K219a Mutant In Complex With Amp-Pcp And 3pg Length = 416

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 3/210 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +    ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 204 ERPFLAILGGAKVADAIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              +T+ K+++W GPV       ++ G   L   + K +   C   + G       AK +
Sbjct: 324 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 383
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           +     ++   G A  E L+G++LPGV AL
Sbjct: 384 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 413

>pdb|2WZD|A Chain A, The Catalytically Active Fully Closed Conformation Of Human Phosphoglycerate Kinase K219a Mutant In Complex With Adp, 3pg And Aluminium Trifluoride Length = 417

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 3/210 (1%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +    ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 205 ERPFLAILGGAKVADAIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 264
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF        N    +   + GIP GW  +D GP S ++ 
Sbjct: 265 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 324
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              +T+ K+++W GPV       ++ G   L   + K +   C   + G       AK +
Sbjct: 325 AEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWN 384
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           +     ++   G A  E L+G++LPGV AL
Sbjct: 385 TEDKVSHVSTGGGASLELLEGKVLPGVDAL 414

>pdb|4DG5|A Chain A, Crystal Structure Of Staphylococcal Phosphoglycerate Kinase Length = 403

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 10/211 (4%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
           KP  AI+GG  + +K   +  L +  D +I  G M++  + A G  +   L+E+   D A
Sbjct: 199 KPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFA 258
Query: 67  SDLIQFARDKHITILYPKDFWCTK-IHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
            DL++   DK   I+ P D    K   +  ++ + PS  IP   E +DIGP +V+     
Sbjct: 259 KDLLEKHGDK---IVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADE 315
Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVI--GSMACKAIAKVSS 183
           +     V+W GP+      ++SN A    G+   ++     +T+I  G  A  AI+    
Sbjct: 316 LEGAHTVVWNGPMGVF---EFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFE 372
Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALDR 214
           + F  ++   G A  E+L+G+ LPG+ A++ 
Sbjct: 373 NDF-THISTGGGASLEYLEGKELPGIKAINN 402

>pdb|1HDI|A Chain A, Pig Muscle 3-Phosphoglycerate Kinase Complexed With 3-Pg And Mgadp Length = 413

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 5/211 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 201 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKK 260
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPS---HGIPDGWEPVDIGPRSVEE 121
              +L+  A    + I  P DF  T      Q +I  +    GIP GW  +D GP+S  +
Sbjct: 261 IVKNLMSKAAANGVKITLPVDF-VTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAK 319
Query: 122 ITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
            +  + + K+++W GPV       ++ G   L   + K +   C   + G       AK 
Sbjct: 320 YSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKW 379
Query: 182 SSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
           ++     ++   G A  E L+G++LPGV AL
Sbjct: 380 NTEDNVSHVSTGGGASLELLEGKVLPGVDAL 410

>pdb|3PGK|A Chain A, The Structure Of Yeast Phosphoglycerate Kinase At 0.25 Nm Resolution Length = 416

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 5/210 (2%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
           +P+ AI+GG  + +K   +  L  + D +I  G M+F     L    +   + +K     
Sbjct: 204 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAVGPE 263
Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
            + L++ A+ K + ++ P DF          N   +    GIP GW+ +D GP S +   
Sbjct: 264 IAKLMEKAKAKGVEVVLPVDFIIADAFSASANTKTVTDKEGIPAGWQGLDNGPESRKLFA 323
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
           +T+ K   ++W GP       +++ G   L   + K S    N  +IG      +AK   
Sbjct: 324 ATVAKATVILWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNTVIIGGGDTATVAKKYG 382
Query: 184 SIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
               ++ V + G A  E L+G+ LPGV+ L
Sbjct: 383 VTDKISHVSTGGGASLELLEGKELPGVAFL 412

>pdb|3Q3V|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Campylobacter Jejuni. Length = 403

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 4/207 (1%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
           +P+ A++GG  +  K  AL  L  + D LI  G  +F  + ALG  +   L+E+   + A
Sbjct: 194 RPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGXAFTFLKALGYDIGNSLLEEELLEEA 253
Query: 67  SDLIQFARDKHITILYPKDFWCTKIHHPNQVEIF-PSHGIPDGWEPVDIGPRSVEEITST 125
           + ++   ++  + I  P D         +    F P+  IP+GW  +DIGP SV      
Sbjct: 254 NKILTKGKNLGVKIYLPVDVVAAPACSQDVPXKFVPAQEIPNGWXGLDIGPASVRLFKEV 313
Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSI 185
           I+  + + W GP       ++S G+ K +     +S+G     V G      +A+   + 
Sbjct: 314 ISDAQTIWWNGPXGVFEIDKFSKGSIKXSHY---ISEGHATSVVGGGDTADVVARAGDAD 370
Query: 186 FGLNMVESGSAVWEFLKGRMLPGVSAL 212
               +   G A  E ++G+ LPGV AL
Sbjct: 371 EXTFISTGGGASLELIEGKELPGVKAL 397

>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum 3-Phosphoglycerate Kinase Length = 424

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 5/211 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           ++P  AI+GG  + +K   +  L  + D  I  G  ++     L    +   L ++  + 
Sbjct: 212 QRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAYTFKKVLNNXKIGTSLFDEAGSK 271
Query: 65  AASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
              ++ + A+ K++ I  P DF       ++ N   +    GIPD W  +D GP+S+E  
Sbjct: 272 IVGEIXEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWXGLDAGPKSIENY 331
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              I   K VIW GP        ++ G+ +   ++ +V++    +T++G     ++ +  
Sbjct: 332 KDVILTSKTVIWNGPQGVFEXPNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQQ 390
Query: 183 SSIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
           +    ++ V + G A  E L+G+ LPGV AL
Sbjct: 391 NKKNEISHVSTGGGASLELLEGKELPGVLAL 421

>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Plasmodium Falciparum, In The Open Conformation Length = 425

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 5/211 (2%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
           ++P  AI+GG  + +K   +  L  + D  I  G  ++     L    +   L ++  + 
Sbjct: 213 QRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAYTFKKVLNNXKIGTSLFDEAGSK 272
Query: 65  AASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
              ++ + A+ K++ I  P DF       ++ N   +    GIPD W  +D GP+S+E  
Sbjct: 273 IVGEIXEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWXGLDAGPKSIENY 332
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              I   K VIW GP        ++ G+ +   ++ +V++    +T++G     ++ +  
Sbjct: 333 KDVILTSKTVIWNGPQGVFEXPNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQQ 391
Query: 183 SSIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
           +    ++ V + G A  E L+G+ LPGV AL
Sbjct: 392 NKKNEISHVSTGGGASLELLEGKELPGVLAL 422

>pdb|2P9Q|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2 Length = 416

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 7/212 (3%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   +  +  + + +I  G M++  +  L  + +   L ++    
Sbjct: 204 ERPFLAILGGAKVKDKIQLIKNMLDKVNFMIIGGGMAYTFLKELKNMQIGASLFDEEGAT 263
Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPN----QVEIFPSHGIPDGWEPVDIGPRSVE 120
              ++++ A    + I++P DF        N    Q  I    GIP GW  +D GP S++
Sbjct: 264 IVKEIMEKAEKNGVKIVFPVDFVTGDKFDENAKVGQATI--ESGIPSGWMGLDCGPESIK 321
Query: 121 EITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAK 180
                + + K ++W GP+       ++ G   L   + K +   C   + G       AK
Sbjct: 322 INAQIVAQAKLIVWNGPIGVFEWDAFAKGTKALMDEVVKATSNGCVTIIGGGDTATCCAK 381
Query: 181 VSSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
             +     ++   G A  E L+G++LPGV AL
Sbjct: 382 WGTEDKVSHVSTGGGASLELLEGKILPGVEAL 413

>pdb|4FEY|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase With Bound Adp From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 395

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 16/214 (7%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           +KP AAI+GG  +  K + L+ L  + + LI  G ++   + A G  V   L E+     
Sbjct: 185 KKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAE 244
Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFP--SHGIPDGWEPVDIGPRSVEEIT 123
           A++++  A+   + I  P D    K    N   I    S  + D    +DIGP S + I 
Sbjct: 245 ATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEM-ILDIGPESQKIIA 303
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
             +     ++W GPV       ++ G   L+     ++Q        G     AI K   
Sbjct: 304 ELLKSANTILWNGPVGVFEFDNFAEGTKALS---LAIAQSHAFSVAGGGDTIAAIEK--- 357
Query: 184 SIFGLN-----MVESGSAVWEFLKGRMLPGVSAL 212
             FG+      +  +G A  EFL+G+ LP +  L
Sbjct: 358 --FGIKDQVSYISTAGGAFLEFLEGKKLPAIEIL 389

>pdb|4EHJ|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 392

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 14/213 (6%)
Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           +KP AAI+GG  +  K + L+ L  + + LI  G ++   + A G  V   L E+     
Sbjct: 182 KKPXAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAE 241
Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A++++  A+   + I  P D    K    N Q  I     +      +DIGP S + I  
Sbjct: 242 ATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEXILDIGPESQKIIAE 301
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            +     ++W GPV       ++ G   L+     ++Q        G     AI K    
Sbjct: 302 LLKSANTILWNGPVGVFEFDNFAEGTKALS---LAIAQSHAFSVAGGGDTIAAIEK---- 354
Query: 185 IFGLN-----MVESGSAVWEFLKGRMLPGVSAL 212
            FG+      +  +G A  EFL+G+ LP +  L
Sbjct: 355 -FGIKDQVSYISTAGGAFLEFLEGKKLPAIEIL 386

>pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein 1 Length = 235

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 34/186 (18%)
Query: 217 PFDIDWSAAY------------HD----------PAQPLVVDIGSGNGLFLLGMARKRKD 254
           P ++DWS  Y            HD           AQ    DIG G G  L+ ++    D
Sbjct: 11  PEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPD 70
Query: 255 LNFLGLELVTHCRDSLQ----------LSGITNGYFIATNATSTFRSIVASYPGKLILVS 304
              LGLE+     D +Q            G  N   + +NA     +    Y G+L  + 
Sbjct: 71  TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF--YKGQLTKMF 128
Query: 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 364
              P+P F R +H+WR++  +L+   + +L   G V+  +D+ E+   M   F E+   +
Sbjct: 129 FLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFE 188
Query: 365 LVLVQD 370
            V ++D
Sbjct: 189 RVPLED 194

>pdb|1ZMR|A Chain A, Crystal Structure Of The E. Coli Phosphoglycerate Kinase Length = 387

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 15/212 (7%)
Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
           +P  AI+GG  +  K   L  L+   D LI  G ++   + A G  V   L E    D A
Sbjct: 183 RPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDEA 242
Query: 67  SDLIQFARDKHITILYPKDFW-CTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
             L+         I  P D    T+        +   + +    + +DIG  S +E+   
Sbjct: 243 KRLLT-----TCNIPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEI 297
Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAKVS 182
           +   K ++W GPV       +  G    T ++      +   ++ G   ++A   +  ++
Sbjct: 298 LKNAKTILWNGPVGVFEFPNFRKG----TEIVANAIADSEAFSIAGGGDTLAAIDLFGIA 353
Query: 183 SSIFGLNMVESGSAVWEFLKGRMLPGVSALDR 214
             I  ++    G A  EF++G++LP V+ L+ 
Sbjct: 354 DKISYIST--GGGAFLEFVEGKVLPAVAMLEE 383

>pdb|2FCA|A Chain A, The Structure Of Bstrmb Length = 213

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL--------VTHCRDSLQLSGITNGYFIA 282
            P+ +++G+G G F+ GMA++  D+N++G+EL        V   +DS +   +      A
Sbjct: 39  NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS-EAQNVKLLNIDA 97
Query: 283 TNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342
              T  F       PG++  V +   +P   +   + R+     ++   +++   G +  
Sbjct: 98  DTLTDVFE------PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF 151
Query: 343 QSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT-KTNQGGWLGENSFGVRSDWEQHVIDRG 401
           ++D   +     + F EYG   L+L     D   +N  G        + +++E+     G
Sbjct: 152 KTDNRGLFEYSLKSFSEYG---LLLTYVSLDLHNSNLEG-------NIMTEYEEKFSALG 201
Query: 402 APMYR 406
            P+YR
Sbjct: 202 QPIYR 206

>pdb|3DXX|A Chain A, Crystal Structure Of Ectrmb Length = 218

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Query: 220 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI 275
           +D+ A +   A P+ ++IG G G  L+ MA+ R + +FLG+E+    V  C  S    G+
Sbjct: 25  LDFPALFGREA-PVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL 83
Query: 276 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 335
           +N   +  +A      ++      L +V +  P+P      ++ R+VQ    E V   L 
Sbjct: 84  SNLRVMCHDAVEVLHKMIPD--NSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQ 141
Query: 336 HDGKVFLQSDIE 347
             G   + +D E
Sbjct: 142 LGGVFHMATDWE 153

>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein, Methyltransferase From Streptococcus Pneumoniae Tigr4 Length = 214

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 85/184 (46%), Gaps = 22/184 (11%)
Query: 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFI---AT 283
            P+ V++GSG G F+ G A++  D+N++G+++    +++  D +   G+ N   +    +
Sbjct: 42  NPIHVEVGSGKGAFVSGXAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGS 101
Query: 284 NATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343
           + T  F        G++  + +   +P   +   + R+  ++ ++    +L  +G++  +
Sbjct: 102 DLTDYFED------GEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 155
Query: 344 SDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAP 403
           +D   +       F +YG  KL  V  +      +G         V +++EQ   ++G  
Sbjct: 156 TDNRGLFEYSLVSFSQYGX-KLNGVWLDLHASDFEG--------NVXTEYEQKFSNKGQV 206
Query: 404 MYRL 407
           +YR+
Sbjct: 207 IYRV 210

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	416
16pk_A	415	PGK, 3-phosphoglycerate kinase; ternary complex, g	4e-28
1php_A	394	3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobac	3e-27
3q3v_A	403	Phosphoglycerate kinase; structural genomics, cent	5e-27
1v6s_A	390	Phosphoglycerate kinase; riken structu genomics/pr	1e-26
4fey_A	395	Phosphoglycerate kinase; structural genomics, niai	2e-26
1vpe_A	398	Phosphoglycerate kinase; transferase, hyperthermos	1e-25
2wzb_A	416	Phosphoglycerate kinase 1; hereditary hemolytic an	2e-24
3oz7_A	417	Phosphoglycerate kinase; transferase, ATP binding,	3e-24
2cun_A	410	Phosphoglycerate kinase; structural genomics, tanp	5e-24
1qpg_A	415	PGK, 3-phosphoglycerate kinase; phosphotransferase	2e-23
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	2e-23
1zmr_A	387	Phosphoglycerate kinase; transferase, glycolysis;	5e-23
1fw8_A	416	PGK P72, phosphoglycerate kinase; phosphotransfera	4e-22
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	3e-21
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	3e-16
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	7e-15
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	3e-14
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	6e-14
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	3e-08
3lpm_A	259	Putative methyltransferase; structural genomics, p	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A* Length = 415

 Score =  113 bits (286), Expect = 4e-28
 Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 18/218 (8%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
            +P  AI+GG  + +K   L  +  R D L+  G M++  + A G  +     E+   + 
Sbjct: 204 PRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEF 263

Query: 66  ASDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A  L++ A D+ + ++ P D  C T+    +   I     IP+G   +DIGP+++E+   
Sbjct: 264 ARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQ 323

Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAK 180
           TI KCK  IW GP+  F     YS G   +   + + +     +++IG   S +   ++ 
Sbjct: 324 TIGKCKSAIWNGPMGVFEMVP-YSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSG 382

Query: 181 VSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
            +  +       S     G A  E L+G+ LPGV+ LD
Sbjct: 383 EAKRM-------SHVSTGGGASLELLEGKTLPGVTVLD 413

>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A* Length = 394

 Score =  111 bits (279), Expect = 3e-27
 Identities = 57/219 (26%), Positives = 101/219 (46%), Gaps = 23/219 (10%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+ AIIGG  + +K   +  L  + D LI  G +++  + ALG  V   L+E+   + 
Sbjct: 186 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIEL 245

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A   ++ A++K +    P D         +   ++ P   IP  W  +DIGP++ E    
Sbjct: 246 AKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRD 305

Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCK-VSQGTCNVTVIG---SMACKAIA 179
            I + K V+W GP+  F     +++G    T  + + +++     +VIG   S A     
Sbjct: 306 VIRESKLVVWNGPMGVFEM-DAFAHG----TKAIAEALAEALDTYSVIGGGDSAAAVEKF 360

Query: 180 KVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
            ++  +             G A  EF++G+ LPGV AL+
Sbjct: 361 GLADKM-------DHISTGGGASLEFMEGKQLPGVVALE 392

>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} Length = 403

 Score =  110 bits (277), Expect = 5e-27
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 22/218 (10%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
            +P+ A++GG  +  K  AL  L  + D LI  G M+F  + ALG  +   L+E+   + 
Sbjct: 193 ARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEE 252

Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A+ ++   ++  + I  P D            ++  P+  IP+GW  +DIGP SV     
Sbjct: 253 ANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKE 312

Query: 125 TITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAK 180
            I+  + + W GP+  F    ++S G    +  +          +V+G   +    A A 
Sbjct: 313 VISDAQTIWWNGPMGVFEI-DKFSKG----SIKMSHYISEGHATSVVGGGDTADVVARAG 367

Query: 181 VSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
            +  +       +     G A  E ++G+ LPGV AL 
Sbjct: 368 DADEM-------TFISTGGGASLELIEGKELPGVKALR 398

>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A Length = 390

 Score =  109 bits (274), Expect = 1e-26
 Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 27/221 (12%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           E+PYA ++GG  + +K   +  L  R D L+  G M+F  + ALG  V   LVE+   D 
Sbjct: 183 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 242

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A DL+  A    + +  P+D    +      +  +FP+  IP  +  +DIGP++ E    
Sbjct: 243 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 302

Query: 125 TITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCK-VSQGTCNVTVIG---SMACKAIA 179
            +   + V W GP+  F     +  G    T  + + ++      TV+G   S+A  A+ 
Sbjct: 303 ALEGARTVFWNGPMGVFEV-PPFDEG----TLAVGQAIAALEGAFTVVGGGDSVA--AVN 355

Query: 180 KVSSSIFGLNMVES-------GSAVWEFLKGRMLPGVSALD 213
           +       L + E        G A  EFL+   LPG+  L+
Sbjct: 356 R-------LGLKERFGHVSTGGGASLEFLEKGTLPGLEVLE 389

>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A Length = 395

 Score =  108 bits (273), Expect = 2e-26
 Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 23/221 (10%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           +KP AAI+GG  +  K + L+ L  + + LI  G ++   + A G  V   L E+     
Sbjct: 185 KKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAE 244

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A++++  A+   + I  P D    K    N Q  I     +      +DIGP S + I  
Sbjct: 245 ATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEMILDIGPESQKIIAE 304

Query: 125 TITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAK 180
            +     ++W GPV  F F   ++ G    T  L      +   +V G   ++A  AI K
Sbjct: 305 LLKSANTILWNGPVGVFEF-DNFAEG----TKALSLAIAQSHAFSVAGGGDTIA--AIEK 357

Query: 181 VSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSAL-DRA 215
                FG+    S     G A  EFL+G+ LP +  L ++A
Sbjct: 358 -----FGIKDQVSYISTAGGAFLEFLEGKKLPAIEILKEKA 393

>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1 Length = 398

 Score =  106 bits (267), Expect = 1e-25
 Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 20/219 (9%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           EKPY  ++GG  + +K   +  L  + D ++  G M F  + ALG  V    VE+   D 
Sbjct: 185 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 244

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEIT 123
           A +L++ A++K + I+ P D    +   P  + ++     GIP+GW  +DIGP ++E   
Sbjct: 245 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 304

Query: 124 STITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIA 179
             ++  K V+W GP+  F     ++ G  ++   +  +++    +TV+G   S A     
Sbjct: 305 QKLSDAKTVVWNGPMGVFEI-DDFAEGTKQVALAIAALTEKGA-ITVVGGGDSAAAVNKF 362

Query: 180 KVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
            +           S     G A  EFL+G+ LPG++++ 
Sbjct: 363 GLEDKF-------SHVSTGGGASLEFLEGKELPGIASMR 394

>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ... Length = 416

 Score =  103 bits (258), Expect = 2e-24
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 21/220 (9%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
              DL+  A    + I  P DF             +   + GIP GW  +D GP S ++ 
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323

Query: 123 TSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAI 178
              +T+ K+++W GPV  F + + ++ G   L   + K +   C +T+IG   +  C A 
Sbjct: 324 AEAVTRAKQIVWNGPVGVFEWEA-FARGTKALMDEVVKATSRGC-ITIIGGGDTATCCAK 381

Query: 179 AKVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
                 +       S     G A  E L+G++LPGV AL 
Sbjct: 382 WNTEDKV-------SHVSTGGGASLELLEGKVLPGVDALS 414

>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} PDB: 1ltk_A* 3oza_A Length = 417

 Score =  102 bits (257), Expect = 3e-24
 Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 21/220 (9%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           ++P  AI+GG  + +K   +  L  + D +I  G M++     L  + +   L ++  + 
Sbjct: 206 QRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSK 265

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
              ++++ A+ K++ I  P DF        N   +      GIPD W  +D GP+S+E  
Sbjct: 266 IVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENY 325

Query: 123 TSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAI 178
              I   K VIW GP   F     ++ G+ +   ++ +V++    +T++G   + +    
Sbjct: 326 KDVILTSKTVIWNGPQGVFEM-PNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQ 383

Query: 179 AKVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
               + I       S     G A  E L+G+ LPGV AL 
Sbjct: 384 QNKKNEI-------SHVSTGGGASLELLEGKELPGVLALS 416

>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii} Length = 410

 Score =  101 bits (255), Expect = 5e-24
 Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 27/225 (12%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFL--ASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGAN 63
           + P   ++GG  + +    +  +    R D ++  GL++     A G  +  + VE    
Sbjct: 189 DSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKK 248

Query: 64  DAASDLIQFARDK----HITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRS 118
               D ++ A +     +  I  P DF             +  + G+   ++ +DIG R+
Sbjct: 249 KGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDIGKRT 308

Query: 119 VEEITSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMA 174
            E+    + K + ++  GP+  F    +++ G    T  + K    +   +V+G   S+A
Sbjct: 309 AEKYREILMKARIIVANGPMGVFER-EEFAIG----TVEVFKAIADSPAFSVLGGGHSIA 363

Query: 175 CKAIAKVSSSIFGLNMVE--S--GSAVWEFLKGRMLPGVSALDRA 215
             +I K     +G+  +   S  G A+  F  G  LP + AL  +
Sbjct: 364 --SIQK-----YGITGITHISTGGGAMLSFFAGEELPVLRALQIS 401

>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A* Length = 415

 Score =  100 bits (252), Expect = 2e-23
 Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 21/220 (9%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
            +P+ AI+GG  + +K   +  L  + D +I  G M+F     L    +   + +K   +
Sbjct: 202 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAE 261

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
               L++ A+ K + ++ P DF        +   +      GIP GW+ +D GP S +  
Sbjct: 262 IVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLF 321

Query: 123 TSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAI 178
            +T+ K K ++W GP   F F  +++ G   L   + K S       +IG   +      
Sbjct: 322 AATVAKAKTIVWNGPPGVFEF-EKFAAGTKALLDEVVKSSAAGN-TVIIGGGDTATVAKK 379

Query: 179 AKVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
             V+  I       S     G A  E L+G+ LPGV+ L 
Sbjct: 380 YGVTDKI-------SHVSTGGGASLELLEGKELPGVAFLS 412

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Length = 235

 Score = 97.1 bits (242), Expect = 2e-23
 Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 19/211 (9%)

Query: 208 GVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR 267
                      D          AQ    DIG G G  L+ ++    D   LGLE+     
Sbjct: 24  FAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVS 83

Query: 268 DSLQL----------SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH 317
           D +Q            G  N   + +NA     +      G+L  +    P+P F R +H
Sbjct: 84  DYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY--KGQLTKMFFLFPDPHFKRTKH 141

Query: 318 RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTN 377
           +WR++  +L+   + +L   G V+  +D+ E+   M   F E+   + V ++D  +    
Sbjct: 142 KWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLEDLSE---- 197

Query: 378 QGGWLGENSFGVRSDWEQHVIDRGAPMYRLM 408
                     G  ++  + V+  G   +  +
Sbjct: 198 ---DPVVGHLGTSTEEGKKVLRNGGKNFPAI 225

>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} Length = 387

 Score = 98.7 bits (247), Expect = 5e-23
 Identities = 55/221 (24%), Positives = 88/221 (39%), Gaps = 28/221 (12%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
            +P  AI+GG  +  K   L  L+   D LI  G ++   + A G  V   L E    D 
Sbjct: 182 ARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDE 241

Query: 66  ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A  L+         I  P D              +   + +    + +DIG  S +E+  
Sbjct: 242 AKRLLTTCN-----IPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAE 296

Query: 125 TITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAK 180
            +   K ++W GPV  F F   +  G    T ++      +   ++ G   ++A  AI  
Sbjct: 297 ILKNAKTILWNGPVGVFEF-PNFRKG----TEIVANAIADSEAFSIAGGGDTLA--AIDL 349

Query: 181 VSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSAL-DRA 215
                FG+    S     G A  EF++G++LP V+ L +RA
Sbjct: 350 -----FGIADKISYISTGGGAFLEFVEGKVLPAVAMLEERA 385

>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Length = 416

 Score = 96.5 bits (241), Expect = 4e-22
 Identities = 56/226 (24%), Positives = 93/226 (41%), Gaps = 21/226 (9%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
            +P+ AI+GG  + +K   +  L  + D +I  G M+F     L    +   + +K   +
Sbjct: 132 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAE 191

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
               L++ A+ K + ++ P DF        +   +      GIP GW+ +D GP S +  
Sbjct: 192 IVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLF 251

Query: 123 TSTITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAI 178
            +T+ K K ++W GP   F F   ++ G   L   + K S       +IG   +      
Sbjct: 252 AATVAKAKTIVWNGPPGVFEFEK-FAAGTKALLDEVVKSSAAGN-TVIIGGGDTATVAKK 309

Query: 179 AKVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALDRAFPFD 219
             V+  I       S     G A  E L+G+ LPGV+ L       
Sbjct: 310 YGVTDKI-------SHVSTGGGASLELLEGKELPGVAFLSEKKSLS 348

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E Length = 246

 Score = 91.0 bits (226), Expect = 3e-21
 Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 23/166 (13%)

Query: 217 PFDIDWSAAYHDPA---------QPLVVDIGSGNGLFLLGMARKRKDLNFLGLE------ 261
           P D+DWS  Y             +  + DIG G G  ++ ++    +   LG+E      
Sbjct: 27  PQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT 86

Query: 262 ------LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP 315
                 ++    ++    G  N   +  NA     +      G+L  +    P+P F + 
Sbjct: 87  NYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE--KGQLSKMFFCFPDPHFKQR 144

Query: 316 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 361
           +H+ R++  +L+   + +L   G V+  +D++++   M +   E+ 
Sbjct: 145 KHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP 190

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* Length = 218

 Score = 76.6 bits (189), Expect = 3e-16
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 13/149 (8%)

Query: 211 ALDRAFP-FDIDWSAAYHDPAQ------PLVVDIGSGNGLFLLGMARKRKDLNFLGLEL- 262
           AL+  +P   +++S    D         P+ ++IG G G  L+ MA+ R + +FLG+E+ 
Sbjct: 8   ALENYWPVMGVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVH 67

Query: 263 ---VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRW 319
              V  C  S    G++N   +  +A      ++      L +V +  P+P      ++ 
Sbjct: 68  SPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIP--DNSLRMVQLFFPDPWHKARHNKR 125

Query: 320 RMVQRSLVEAVSDLLVHDGKVFLQSDIEE 348
           R+VQ    E V   L   G   + +D E 
Sbjct: 126 RIVQVPFAELVKSKLQLGGVFHMATDWEP 154

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Length = 213

 Score = 72.3 bits (178), Expect = 7e-15
 Identities = 25/141 (17%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 212 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCR 267
           +     +   W+  + +   P+ +++G+G G F+ GMA++  D+N++G+EL    +    
Sbjct: 21  ISNPADYKGKWNTVFGNDN-PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV 79

Query: 268 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 327
             ++ S   N   +  +A  T   +    PG++  V +   +P   +   + R+     +
Sbjct: 80  QKVKDSEAQNVKLLNIDAD-TLTDVFE--PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFL 136

Query: 328 EAVSDLLVHDGKVFLQSDIEE 348
           +   +++   G +  ++D   
Sbjct: 137 KKYEEVMGKGGSIHFKTDNRG 157

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Length = 214

 Score = 70.3 bits (173), Expect = 3e-14
 Identities = 23/141 (16%), Positives = 64/141 (45%), Gaps = 8/141 (5%)

Query: 212 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCR 267
           +         W   + +   P+ V++GSG G F+ GMA++  D+N++G+++    +++  
Sbjct: 24  VLNPLEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL 82

Query: 268 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 327
           D +   G+ N   +  + +           G++  + +   +P   +   + R+  ++ +
Sbjct: 83  DKVLEVGVPNIKLLWVDGSDLTDYFE---DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFL 139

Query: 328 EAVSDLLVHDGKVFLQSDIEE 348
           +    +L  +G++  ++D   
Sbjct: 140 DTFKRILPENGEIHFKTDNRG 160

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 69.7 bits (170), Expect = 6e-14
 Identities = 17/171 (9%), Positives = 49/171 (28%), Gaps = 19/171 (11%)

Query: 219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL--------VTHCRDSL 270
           D ++          +V+D+G+G+G     +AR+      + L+                 
Sbjct: 17  DAEFEQLR-SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKP 75

Query: 271 QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 330
              G+ N  ++   A           P    +  +    P +             ++  +
Sbjct: 76  AKGGLPNLLYLWATA--------ERLPPLSGVGELHVLMP-WGSLLRGVLGSSPEMLRGM 126

Query: 331 SDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGW 381
           + +        +  ++      +  +  E+ +       +    +  + GW
Sbjct: 127 AAVCRPGASFLVALNLHAWRPSV-PEVGEHPEPTPDSADEWLAPRYAEAGW 176

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 52.9 bits (126), Expect = 3e-08
 Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 16/133 (12%)

Query: 221 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT--------HCRDSLQL 272
           + +         + +D+G+G+G  +  +A   ++  ++G++ V                 
Sbjct: 16  ELTEIIGQF-DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK 74

Query: 273 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 332
            G++N  F+   A     S+          +SI  P               R ++  V+D
Sbjct: 75  GGLSNVVFVIAAA----ESLPFELKNIADSISILFPWGTL---LEYVIKPNRDILSNVAD 127

Query: 333 LLVHDGKVFLQSD 345
           L   +      + 
Sbjct: 128 LAKKEAHFEFVTT 140

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 18/143 (12%)

Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITN---------GYF 280
           ++D+ SGNG+  L ++  R     +G+E+        + S+  + + +            
Sbjct: 53  IIDLCSGNGIIPLLLST-RTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKI 111

Query: 281 IATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK 339
                      +  + P       S++  N  F    H         +   + LL   GK
Sbjct: 112 TDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGK 171

Query: 340 VFL---QSDIEEVMLRMKQQFLE 359
                    + +++  M++  LE
Sbjct: 172 ANFVHRPERLLDIIDIMRKYRLE 194

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 46/345 (13%), Positives = 87/345 (25%), Gaps = 82/345 (23%)

Query: 76  KHITILYPKD------FWCTKIHHPNQVEIFPSHGI-PD-GW--EPVDIGPRSVEEITST 125
            HI +           FW         V+ F    +  +  +   P+    R    +T  
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 126 ITKCKKVIWVGPVKFRFSSQYS----NGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
             + +  ++     F   ++Y+        KL   L ++     NV + G          
Sbjct: 112 YIEQRDRLYNDNQVF---AKYNVSRLQPYLKLRQALLELRPAK-NVLIDG---------- 157

Query: 182 SSSIFGLNMVESGSAVWEFLKGRMLPGVSALD----RAFPFDIDW--SAAYHDPA----- 230
                   ++ SG           +     L         F I W      + P      
Sbjct: 158 --------VLGSGKTW--------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 231 -QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT------HCRDSLQLSGITNG----Y 279
            Q L+  I           +  +  ++ +  EL        +    L L  + N      
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 280 F-------IATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 332
           F       + T        + A+    + L             E +  ++ + L     D
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVK-SLLLKYLDCRPQD 317

Query: 333 L--LVHDGKVFLQSDIEEVMLRMK---QQFLEYGKGKLVLVQDEC 372
           L   V        S I E +         +      KL  + +  
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	416
16pk_A	415	PGK, 3-phosphoglycerate kinase; ternary complex, g	100.0
1vpe_A	398	Phosphoglycerate kinase; transferase, hyperthermos	100.0
3oz7_A	417	Phosphoglycerate kinase; transferase, ATP binding,	100.0
1fw8_A	416	PGK P72, phosphoglycerate kinase; phosphotransfera	100.0
1v6s_A	390	Phosphoglycerate kinase; riken structu genomics/pr	100.0
1qpg_A	415	PGK, 3-phosphoglycerate kinase; phosphotransferase	100.0
3q3v_A	403	Phosphoglycerate kinase; structural genomics, cent	100.0
1php_A	394	3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobac	100.0
4fey_A	395	Phosphoglycerate kinase; structural genomics, niai	100.0
2wzb_A	416	Phosphoglycerate kinase 1; hereditary hemolytic an	100.0
1zmr_A	387	Phosphoglycerate kinase; transferase, glycolysis;	100.0
2cun_A	410	Phosphoglycerate kinase; structural genomics, tanp	100.0
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.98
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.97
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.97
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.96
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.95
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.6
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.52
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.49
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.48
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.46
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.46
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.45
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.45
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.44
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.44
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.43
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.42
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.42
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.42
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.42
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.42
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.41
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.4
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.39
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.38
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.38
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.38
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.38
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.38
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.38
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.38
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.37
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.37
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.37
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.37
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.37
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.36
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.36
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.36
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.35
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.35
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.34
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.34
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.34
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.34
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.34
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.33
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.33
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.33
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.33
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.33
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.33
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.32
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.32
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.32
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.32
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.31
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.31
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.31
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.31
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.31
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.31
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.31
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.31
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.31
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.31
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.3
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.3
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.3
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.3
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.3
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.3
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.3
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.29
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.29
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.29
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.29
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.29
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.29
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.29
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.28
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.28
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.28
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.28
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.28
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.28
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.27
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.26
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.26
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.26
3ocj_A	305	Putative exported protein; structural genomics, PS	99.26
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.26
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.26
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.25
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.25
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.25
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.25
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.25
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.25
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.25
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.25
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.24
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.24
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.24
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.24
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.24
2o07_A	304	Spermidine synthase; structural genomics, structur	99.24
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.24
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.24
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.24
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.24
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.23
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.23
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.23
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.23
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.23
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.23
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.22
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.21
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.21
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.21
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.2
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.2
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.2
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.19
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.19
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.19
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.19
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.19
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.19
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.19
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.19
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.18
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.18
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.18
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.18
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.17
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.17
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.17
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.16
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.16
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.16
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.15
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.15
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.15
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.15
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.15
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.15
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.14
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.14
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.14
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.14
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.14
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.13
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.13
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.13
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.13
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.13
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.13
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.13
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.12
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.11
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.1
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.1
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.1
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.1
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.1
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.1
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.09
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.09
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.09
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.08
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.07
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.07
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.07
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.07
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.07
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.07
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.07
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.06
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.06
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.06
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.06
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.06
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.05
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.05
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.05
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.05
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.04
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.04
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.02
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.02
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.02
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.02
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.01
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.0
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.0
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.99
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.99
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.99
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.99
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.99
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.98
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.98
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.98
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.98
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.97
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.97
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.97
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.96
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.96
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.95
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.95
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.94
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.94
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.94
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.93
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.93
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.93
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.93
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.92
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.91
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.9
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.9
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.9
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.9
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.89
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.87
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.87
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.87
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.86
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.86
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.85
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.85
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.84
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.84
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.84
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.83
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.83
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.81
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.81
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.8
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.8
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.79
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.78
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.75
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.72
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.72
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.69
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.68
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.68
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.67
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.6
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.56
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.56
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.55
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.53
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.46
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.4
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.36
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.36
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.31
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.3
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.3
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.28
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.26
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.22
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.22
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.21
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.19
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.18
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.17
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.13
3lkd_A	542	Type I restriction-modification system methyltrans	98.12
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.1
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.09
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.02
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.0
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.97
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.95
3khk_A	544	Type I restriction-modification system methylation	97.92
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.91
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.84
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.81
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.68
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.64
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.55
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.54
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.48
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.39
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.32
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.11
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.05
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.02
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	96.89
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.65
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.64
3ufb_A	530	Type I restriction-modification system methyltran	96.57
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.32
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.22
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.73
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	95.57
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.51
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	95.5
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.44
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.43
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	94.55
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	94.49
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	94.05
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	93.85
2oo3_A	283	Protein involved in catabolism of external DNA; st	93.83
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	93.39
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	93.03
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	92.88
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	92.44
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	92.22
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	92.09
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	91.83
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	91.45
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	91.3
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	90.74
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	90.39
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	90.3
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	90.25
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	90.14
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	90.11
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	90.07
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	89.88
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	89.57
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	89.57
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	89.43
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	89.34
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	89.32
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	88.8
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	88.75
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	88.7
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	88.28
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	87.94
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	87.04
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	86.84
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	86.32
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	85.56
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	85.16
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	84.69
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	84.47
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	84.45
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	82.04
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	81.57
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	81.56
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	81.4
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	81.21
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	81.1
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	80.86
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	80.77
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	80.53
4eye_A	342	Probable oxidoreductase; structural genomics, niai	80.4

>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*

Probab=100.00  E-value=4.8e-66  Score=511.45  Aligned_cols=211  Identities=27%  Similarity=0.481  Sum_probs=196.7

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (416)
                      +++|+||++||||||||||||++|+||++|||+|||||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus       200 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~A~~ll~ka~~~g~~i~  279 (415)
T 16pk_A          200 LGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVI  279 (415)
T ss_dssp             HSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTHHHHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeEeCcHHHHHHHHHcCCCcCccccChhhHHHHHHHHHHHHhcCCEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (416)
Q Consensus        82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (416)
                      ||+|++|++++ .+.+..++++++||+|||++||||+|++.|++++..|+||+|||||||||+++|+.||++++++++++
T Consensus       280 lPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDIGp~T~~~~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~~  359 (415)
T 16pk_A          280 LPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRG  359 (415)
T ss_dssp             CCSSEEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHH
T ss_pred             CCceeehhhcccCCCceEEeehhcCCCCCEEeecCHHHHHHHHHHHHhCCEEEEECCcccccCchHHHHHHHHHHHHHhc
Confidence            99999999986 44566677889999999999999999999999999999999999999999999999999999999997


Q ss_pred             hcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccc
Q 014919          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (416)
Q Consensus       161 ~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~  214 (416)
                      +++.+.+||+|||+   ++..+|+.++++|+||  ||||+||||+|+.+|++++|.+
T Consensus       360 t~~~~a~sIvGGGDt~aAv~~~G~~d~~shiST--GGGA~Le~LeGk~LPgv~aL~~  414 (415)
T 16pk_A          360 THEHGLMSIIGGGDSASAAELSGEAKRMSHVST--GGGASLELLEGKTLPGVTVLDD  414 (415)
T ss_dssp             HHHHCCEEEECSHHHHHHHHHTTCTTTSSEECS--CHHHHHHHHTTCCCHHHHTSCB
T ss_pred             cCCCCCEEEECCcHHHHHHHHcCCccCceEEeC--ChHHHHHHHcCCCcchHHHhhc
Confidence            52122489999986   4457889999999999  8999999999999999999864

>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1

Probab=100.00  E-value=5.8e-66  Score=509.25  Aligned_cols=210  Identities=26%  Similarity=0.503  Sum_probs=196.9

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (416)
                      +++|+||++||+|||||||||++|+||+++||+|||||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus       181 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~SL~E~d~~~~a~~ll~ka~~~g~~i~  260 (398)
T 1vpe_A          181 TYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDLAKELVEKAKEKGVEIV  260 (398)
T ss_dssp             HHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeEeCcHHHHHHHHHcCCCCCchhcChhhHHHHHHHHHHHHhcCCEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeeec-CCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHh
Q 014919           82 YPKDFWCTKIH-HPNQVEIFP-SHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCK  159 (416)
Q Consensus        82 lP~D~~v~~~~-~~~~~~~~~-~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~  159 (416)
                      ||+|++|++++ .+.+..+++ +++||+|||++||||+|++.|++++..|+||+|||||||||+++|+.||+++++++++
T Consensus       261 lPvD~vva~~f~~~a~~~~~~~~~~ip~~~m~lDIGp~T~~~~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~  340 (398)
T 1vpe_A          261 LPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAA  340 (398)
T ss_dssp             CCSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHH
T ss_pred             CCceeehhhcccCCCCeEEecccccCCCCCEeeecCHHHHHHHHHHHhhCCEEEEECCcccccCchHHHHHHHHHHHHHh
Confidence            99999999986 455666778 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccc
Q 014919          160 VSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (416)
Q Consensus       160 ~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~  214 (416)
                      +++.++ +||+|||+   ++..+|+.++++|+||  ||||+||||+|+.+|++++|.+
T Consensus       341 ~t~~~~-~sivGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LeGk~LPgv~aL~~  395 (398)
T 1vpe_A          341 LTEKGA-ITVVGGGDSAAAVNKFGLEDKFSHVST--GGGASLEFLEGKELPGIASMRI  395 (398)
T ss_dssp             HHHTTC-EEEEESHHHHHHHHHTTCGGGSSEEES--CHHHHHHHHTSSCCHHHHTSCB
T ss_pred             hccCCC-EEEECCcHHHHHHHHcCCcCCccEEeC--ChHHHHHHHcCCCCcHHHHHHh
Confidence            764443 89999886   4457889899999999  8999999999999999999865

>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} SCOP: c.86.1.1 PDB: 1ltk_A* 3oza_A

Probab=100.00  E-value=1.3e-65  Score=509.39  Aligned_cols=209  Identities=24%  Similarity=0.473  Sum_probs=196.2

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHH-cCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHA-LGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a-~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (416)
                      +++|+||++||+|||||||||++|+||+++||+|||||+||||||+| +|++||+|++|++.++.|++|+++|+++|++|
T Consensus       202 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~~G~~iG~Sl~e~d~~~~a~~il~~a~~~g~~i  281 (417)
T 3oz7_A          202 LENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQI  281 (417)
T ss_dssp             HTSCCSSEEEEEECSCSTTSHHHHHHHHTTCSEEEEETTHHHHHHHHHHCCCBTTSCCCTTTHHHHHHHHHHHHHTTCEE
T ss_pred             HcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEeccHHHHHHHHHHcCCccCchhcCccChHHHHHHHHHHHHcCCEE
Confidence            58999999999999999999999999999999999999999999999 89999999999999999999999999999999


Q ss_pred             ecceeEEEecCC-CCCceeee-cCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHH
Q 014919           81 LYPKDFWCTKIH-HPNQVEIF-PSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (416)
Q Consensus        81 ~lP~D~~v~~~~-~~~~~~~~-~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (416)
                      +||+|++|++++ .+++..++ +.++||+|||++||||+|++.|++++..|+||+|||||||||+++|+.||++++++++
T Consensus       282 ~LPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDiGp~T~~~~~~~i~~akTIvWNGP~GvFE~~~Fa~GT~~va~aia  361 (417)
T 3oz7_A          282 FLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVV  361 (417)
T ss_dssp             ECCSEEEEESSSSTTSCEEEEESSSCBCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSBCTTSSTTTHHHHHHHHHHH
T ss_pred             ECCceeEEeecccCCCCeEEecccccCCCCCeeeecCHHHHHHHHHHHHhCCEEEEECCCccccccchhHHHHHHHHHHH
Confidence            999999999987 45566676 6899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCccccc
Q 014919          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD  213 (416)
Q Consensus       159 ~~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~  213 (416)
                      ++|+++ .+||+|||+   ++..+|+.++++|+||  ||||+||||+|+.+|++++|.
T Consensus       362 ~~t~~~-a~sIvGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LeGk~LPgv~aL~  416 (417)
T 3oz7_A          362 EVTKKG-AITIVGGGDTASLVEQQNKKNEISHVST--GGGASLELLEGKELPGVLALS  416 (417)
T ss_dssp             HHHHHT-CEEEECSHHHHHHHHHTTCGGGSSEECS--CSHHHHHHHTTCCCHHHHTSC
T ss_pred             hhccCC-CEEEEcCcHHHHHHHHcCCcCCccEEcC--ChHHHHHHHcCCCCcceeecc
Confidence            977555 489999886   4457889899999999  899999999999999999885

>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1

Probab=100.00  E-value=9.3e-66  Score=510.34  Aligned_cols=212  Identities=25%  Similarity=0.458  Sum_probs=197.8

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCC-CCCcccccCchHHHHHHHHHHhhCCCee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLP-VPPELVEKGANDAASDLIQFARDKHITI   80 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~-ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (416)
                      +++|+||++||||||||||||++|+||++|||+|||||+||||||+|+|++ ||+|++|++.++.|++|+++|+++|++|
T Consensus       128 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~TFl~A~G~~~IG~SL~E~d~~~~a~~ll~kak~~g~~i  207 (416)
T 1fw8_A          128 LENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEV  207 (416)
T ss_dssp             HHSCCSSEEEEEECSCSTTTHHHHHHHHTTCSEEEEEGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HcCCCCCeEEEEcCcchhhHHHHHHHHHHhhCeeEeChHHHHHHHHHcCCCccCccccChhhHHHHHHHHHHHHhcCCEE
Confidence            579999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             ecceeEEEecCC-CCCceee-ecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHH
Q 014919           81 LYPKDFWCTKIH-HPNQVEI-FPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (416)
Q Consensus        81 ~lP~D~~v~~~~-~~~~~~~-~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (416)
                      +||+|++|++++ .+.+..+ ++.++||+|||++||||+|++.|++++..|+||+|||||||||+++|+.||.+++++++
T Consensus       208 ~lPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDIGp~T~~~~~~~i~~akTIvWNGPmGVFE~~~Fa~GT~~va~aia  287 (416)
T 1fw8_A          208 VLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVV  287 (416)
T ss_dssp             ECCSEEEEESSSSTTCCEEEEETTTCCCTTCEEEEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHH
T ss_pred             ECCceEEEeeccCCCCCeEEecchhcCCCCCEEEecCHHHHHHHHHHHhhCCEEEEECCCccccCchHHHHHHHHHHHHH
Confidence            999999999987 4455556 78899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccccC
Q 014919          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAF  216 (416)
Q Consensus       159 ~~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~~~  216 (416)
                      ++++.+ .+||+|||+   ++..+|+.++++|+||  ||||+||||+|+.+|++++|.+..
T Consensus       288 ~~~~~~-a~sIvGGGDt~aav~~~G~~d~~shiST--GGGA~LE~LEGk~LPgV~aL~~~~  345 (416)
T 1fw8_A          288 KSSAAG-NTVIIGGGDTATVAKKYGVTDKISHVST--GGGASLELLEGKELPGVAFLSEKK  345 (416)
T ss_dssp             HHHHTT-CEEEECTTHHHHHHHHTTCGGGSSEECS--CSHHHHHHHTTCCCHHHHTSCSSC
T ss_pred             hhccCC-CEEEEcCcHHHHHHHHcCCCCCcceecc--ccceehHhhcCCCChHHHHHHhcc
Confidence            976444 489999886   4467899899999999  899999999999999999997653

>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A

Probab=100.00  E-value=1.8e-65  Score=504.53  Aligned_cols=208  Identities=26%  Similarity=0.460  Sum_probs=194.9

Q ss_pred             CCCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014919            1 MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (416)
Q Consensus         1 ~~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (416)
                      .+++|+||++||+|||||||||++|+||++|||+|||||+||||||+|+|++||+|++|++.++.|++|+++++++|++|
T Consensus       178 ~l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~a~~ll~~a~~~g~~i  257 (390)
T 1v6s_A          178 LLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDLAKDLLGRAEALGVRV  257 (390)
T ss_dssp             TTSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGGGHHHHHHHHHHHHHHTCEE
T ss_pred             HhcCCCCCeEEEEcCCchhhHHHHHHHHHHHhccceeCcHHHHHHHHHcCCCCCccccchhhHHHHHHHHHHHHHcCCEE
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHh
Q 014919           81 LYPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCK  159 (416)
Q Consensus        81 ~lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~  159 (416)
                      +||+|++|++++ .+.+..++++++||+|||++||||+|++.|++++..|+||+|||||||||+++|+.||+++++++++
T Consensus       258 ~lPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~  337 (390)
T 1v6s_A          258 YLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAA  337 (390)
T ss_dssp             ECCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSCTTSTTTTHHHHHHHHHHHT
T ss_pred             ECCcChhhhhccCCCCceEEeehhcCCCCCEeeecCHHHHHHHHHHHhhCCEEEEeCCcccccCchHHHHHHHHHHHHHh
Confidence            999999999987 4556667788999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCccccc
Q 014919          160 VSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD  213 (416)
Q Consensus       160 ~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~  213 (416)
                      ++  + .+||+|||+   ++..+|+.++++|+||  ||||+||||+|+.+|++++|.
T Consensus       338 ~~--~-~~sivGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LeGk~LPgv~aL~  389 (390)
T 1v6s_A          338 LE--G-AFTVVGGGDSVAAVNRLGLKERFGHVST--GGGASLEFLEKGTLPGLEVLE  389 (390)
T ss_dssp             CS--S-CEEEEESHHHHHHHHTTTCGGGSSEECC--SSSHHHHHHHHSCCHHHHTTC
T ss_pred             cC--C-CEEEECChHHHHHHHHcCCccCceEEeC--ChHHHHHHHcCCCcchHHHhc
Confidence            52  2 389999886   3456788889999999  899999999999999999885

>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*

Probab=100.00  E-value=1.1e-65  Score=509.76  Aligned_cols=210  Identities=26%  Similarity=0.468  Sum_probs=196.1

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCC-CCCcccccCchHHHHHHHHHHhhCCCee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLP-VPPELVEKGANDAASDLIQFARDKHITI   80 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~-ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (416)
                      +++|+||++||||||||||||++|+||+++||+|||||+||||||+|+|++ ||+|++|++.++.|++|+++|+++|++|
T Consensus       198 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~TFl~A~G~~~iG~Sl~E~d~~~~a~~ll~ka~~~g~~i  277 (415)
T 1qpg_A          198 LENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEV  277 (415)
T ss_dssp             HSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEE
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCEEEeChHHHHHHHHHcCCCcccchhcChhhHHHHHHHHHHHHHcCCEE
Confidence            589999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             ecceeEEEecCC-CCCceee-ecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHH
Q 014919           81 LYPKDFWCTKIH-HPNQVEI-FPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (416)
Q Consensus        81 ~lP~D~~v~~~~-~~~~~~~-~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (416)
                      +||+|++|++++ .+.+..+ ++.++||+|||++||||+|++.|++++..|+||+|||||||||+++|+.||++++++++
T Consensus       278 ~lPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDiGp~T~~~~~~~i~~akTIvWNGPmGvFE~~~Fa~GT~~va~aia  357 (415)
T 1qpg_A          278 VLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVV  357 (415)
T ss_dssp             ECCSEEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHH
T ss_pred             ECCcchhhhhccCCCCCeEEecchhcCCCCCeeeccCHHHHHHHHHHHhhCCEEEEeCCccccccchHHHHHHHHHHHHH
Confidence            999999999986 3445555 78899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccc
Q 014919          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (416)
Q Consensus       159 ~~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~  214 (416)
                      ++++.+ .+||+|||+   ++..+|+.++++|+||  ||||+||||+|+.+|++++|.+
T Consensus       358 ~~t~~~-a~sIvGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LEGk~LPgv~aL~~  413 (415)
T 1qpg_A          358 KSSAAG-NTVIIGGGDTATVAKKYGVTDKISHVST--GGGASLELLEGKELPGVAFLSE  413 (415)
T ss_dssp             HHHHHT-CEEEECCHHHHHHHHHTTCGGGSSEECC--CTHHHHHHHTSCCCHHHHTSCB
T ss_pred             hhccCC-CEEEECCcHHHHHHHHcCCCCCceEEeC--ChHHHHHHHcCCCCchHHHhhc
Confidence            975434 489999986   4467899899999999  8999999999999999999864

>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} SCOP: c.86.1.0

Probab=100.00  E-value=1.3e-65  Score=506.65  Aligned_cols=208  Identities=27%  Similarity=0.486  Sum_probs=195.3

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (416)
                      +++|+||++||+|||||||||++|+||+++||+|||||+||||||+|+|++||+|++|++.++.|++|+++|+++|++|+
T Consensus       189 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~e~d~~~~a~~ll~~a~~~g~~i~  268 (403)
T 3q3v_A          189 IKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIY  268 (403)
T ss_dssp             TTCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECSTTHHHHHHHTTCCCTTSCCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred             HcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCccccchhhHHHHHHHHHHHHHcCCEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (416)
Q Consensus        82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (416)
                      ||+|++|++++ .+.+..++++++||+|||++||||+|++.|++++..|+||+||||||+||+++|+.||++++++++++
T Consensus       269 LPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDIGp~T~~~~~~~i~~akTIvWNGP~GvFE~~~Fa~GT~~va~aia~~  348 (403)
T 3q3v_A          269 LPVDVVAAPACSQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEG  348 (403)
T ss_dssp             CCSEEEEESSSSTTSCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHS
T ss_pred             CCceEEEeeccCCCCceEEEecccCCCCCEeeecChHHHHHHHHHHHhCCEEEEECCCccccccchhHHHHHHHHHHHhc
Confidence            99999999987 45566677889999999999999999999999999999999999999999999999999999999885


Q ss_pred             hcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCccccccc
Q 014919          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA  215 (416)
Q Consensus       161 ~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~~  215 (416)
                      .    .+||+|||+   ++..+|+.++++|+||  ||||+||||+|+.+|++++|.+.
T Consensus       349 ~----a~sIvGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LeGk~LPgv~aL~~~  400 (403)
T 3q3v_A          349 H----ATSVVGGGDTADVVARAGDADEMTFIST--GGGASLELIEGKELPGVKALRSK  400 (403)
T ss_dssp             S----SEEEEESHHHHHHHHHTTCGGGSSEECC--CHHHHHHHHTTCCCHHHHTTBC-
T ss_pred             C----CEEEECCcHHHHHHHHcCCcCCccEEcC--ChHHHHHHHcCCCCcHHHHHhhh
Confidence            2    489999886   4457889899999999  89999999999999999999753

>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*

Probab=100.00  E-value=1.8e-65  Score=505.14  Aligned_cols=208  Identities=26%  Similarity=0.487  Sum_probs=195.2

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (416)
                      +++|+||++||+|||||||||++|+||++|||+|||||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus       182 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~SL~E~d~~~~a~~ll~~a~~~g~~i~  261 (394)
T 1php_A          182 LSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIELAKSFMEKAKEKGVRFY  261 (394)
T ss_dssp             HHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCCGGGHHHHHHHHHHHHHHTCEEE
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeeeCcHHHHHHHHHcCCCCCccccchhhHHHHHHHHHHHHhcCCEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (416)
Q Consensus        82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (416)
                      ||+|++|++++ .+.+..++++++||+|||++||||+|++.|++++..|+||+|||||||||+++|+.||++++++++++
T Consensus       262 lPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~~  341 (394)
T 1php_A          262 MPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEA  341 (394)
T ss_dssp             CCSEEEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHC
T ss_pred             CCcchhhhhccCCCCceEEeehhcCCCCCEeeecCHHHHHHHHHHHhhCCEEEEeCCcccccCchHHHHHHHHHHHHHhc
Confidence            99999999987 45666677889999999999999999999999999999999999999999999999999999999985


Q ss_pred             hcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccc
Q 014919          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (416)
Q Consensus       161 ~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~  214 (416)
                        .+ .+||+|||+   ++..+|+.++++|+||  ||||+||||+|+.+|++++|.+
T Consensus       342 --~~-~~sivGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LeGk~LPgv~aL~~  393 (394)
T 1php_A          342 --LD-TYSVIGGGDSAAAVEKFGLADKMDHIST--GGGASLEFMEGKQLPGVVALED  393 (394)
T ss_dssp             --TT-CEEEECSHHHHHHHHHTTCGGGSSEECS--CTHHHHHHHTTCCCHHHHTSCB
T ss_pred             --CC-CEEEECChHHHHHHHHcCCCCCccEEeC--ChHHHHHHHcCCCcchHHHhhc
Confidence              12 389999986   4457889899999999  8999999999999999999864

>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A

Probab=100.00  E-value=1.7e-65  Score=504.74  Aligned_cols=208  Identities=24%  Similarity=0.355  Sum_probs=195.4

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (416)
                      +++|+||++||+|||||||||++|+||+++||+|||||+||||||+|+|++||+|++|++.++.|++|+++|+++|++|+
T Consensus       181 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~a~~il~~a~~~g~~i~  260 (395)
T 4fey_A          181 LKSPKKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAEATEILAKAKALGVNIP  260 (395)
T ss_dssp             HTSCCSSEEEEEEESCHHHHHHHHHHHTTTCSEEEEEEHHHHHHHHHTTCCCTTCCCCGGGHHHHHHHHHHHHHTTCBCC
T ss_pred             hcCCCCceEEEEeCccHHHHHHHHHHHHHhcCEEEEChHHHHHHHHHcCCccCccccchhhHHHHHHHHHHHHHcCCEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (416)
Q Consensus        82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (416)
                      ||+|++|++++ ++.+..++++++||+|||++||||+|++.|++++..|+||+|||||||||+++|+.||++++++++++
T Consensus       261 LPvD~vva~~f~~~a~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~akTIvWNGP~GvFE~~~Fa~GT~~va~aia~~  340 (395)
T 4fey_A          261 VPVDVRVAKEFSENAQAIIKKVSDVVADEMILDIGPESQKIIAELLKSANTILWNGPVGVFEFDNFAEGTKALSLAIAQS  340 (395)
T ss_dssp             CCSEEEEESSSSTTCCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHHHCSEEEEECCSSCTTSGGGCHHHHHHHHHHHHH
T ss_pred             ccceEEEeccccCCCceEEEEcccCCCCCcceecChHHHHHHHHHHHhCCEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            99999999987 45566677889999999999999999999999999999999999999999999999999999999884


Q ss_pred             hcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCccccccc
Q 014919          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA  215 (416)
Q Consensus       161 ~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~~  215 (416)
                         + .+||+|||+   ++..+|+.++++|+||  ||||+||||+|+.+|++++|.+.
T Consensus       341 ---~-a~sivGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LeGk~LPgv~aL~~~  392 (395)
T 4fey_A          341 ---H-AFSVAGGGDTIAAIEKFGIKDQVSYIST--AGGAFLEFLEGKKLPAIEILKEK  392 (395)
T ss_dssp             ---C-SEEEEESHHHHHHHHHTTCSTTSSEEEC--CSHHHHHHHTTCCCHHHHHHHHT
T ss_pred             ---C-CeEEECCcHHHHHHHHcCCcCCceEEcC--ChHHHHHHHcCCCchHHHHHHhh
Confidence               2 589999886   4457899999999999  89999999999999999998653

>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ...

Probab=100.00  E-value=1.4e-65  Score=509.09  Aligned_cols=210  Identities=26%  Similarity=0.487  Sum_probs=196.4

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCC-CCCcccccCchHHHHHHHHHHhhCCCee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLP-VPPELVEKGANDAASDLIQFARDKHITI   80 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~-ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (416)
                      +++|+||++||+|||||||||++|+||+++||+|||||+||||||+|+|++ ||+|++|++.++.|++|+++|+++|++|
T Consensus       200 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~TFl~A~G~~~iG~Sl~E~d~~~~a~~ll~ka~~~g~~i  279 (416)
T 2wzb_A          200 LESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKI  279 (416)
T ss_dssp             HHSCCSSEEEEECSSCHHHHGGGHHHHTTTCSEEEECGGGHHHHHHHHHCCCCTTSCCCHHHHTTHHHHHHHHHHTTCEE
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCeeeeChHHHHHHHHHcCCCcccchhcChhhHHHHHHHHHHHHHcCCEE
Confidence            579999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             ecceeEEEecCC-CCCceee-ecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHH
Q 014919           81 LYPKDFWCTKIH-HPNQVEI-FPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (416)
Q Consensus        81 ~lP~D~~v~~~~-~~~~~~~-~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (416)
                      +||+|++|++++ .+.+..+ ++.++||+|||++||||+|++.|++++..|+||+|||||||||+++|+.||++++++++
T Consensus       280 ~lPvD~vva~~f~~~a~~~~~~~~~~Ip~~~m~lDiGp~T~~~~~~~i~~akTIvWNGPmGvFE~~~Fa~GT~~va~aia  359 (416)
T 2wzb_A          280 TLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVV  359 (416)
T ss_dssp             ECCCEEEEESSSSTTCCEEEEETTTCCCTTCEEEEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHH
T ss_pred             ECCcchhhhhccCCCCCeEEecchhcCCCCCeeeecCHHHHHHHHHHHhhCCEEEEECCCcccccchHHHHHHHHHHHHH
Confidence            999999999987 4455556 78899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccc
Q 014919          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (416)
Q Consensus       159 ~~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~  214 (416)
                      ++++.+ .+||+|||+   ++..+|+.++++|+||  ||||+||||+|+.+|++++|.+
T Consensus       360 ~~t~~~-a~sIvGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LEGk~LPgv~aL~~  415 (416)
T 2wzb_A          360 KATSRG-CITIIGGGDTATCCAKWNTEDKVSHVST--GGGASLELLEGKVLPGVDALSN  415 (416)
T ss_dssp             HHHHTT-CEEEEESTTHHHHHHHTTCTTSSSEEES--CSHHHHHHHHTCCCHHHHTSCB
T ss_pred             hhccCC-CEEEEcCcHHHHHHHHcCCCCCceEEeC--chHHHHHHHcCCCccHHHHHhc
Confidence            976444 489999876   4567899999999999  8999999999999999998864

>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.3e-63  Score=490.18  Aligned_cols=202  Identities=23%  Similarity=0.372  Sum_probs=188.8

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (416)
                      +++|+||++||+|||||||||++|+||++|||+|||||+||||||+|+|++||+|++|++.++.|++|+++     ++|+
T Consensus       178 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~kvD~liiGGgma~tFl~A~G~~iG~Sl~E~d~~~~a~~ll~~-----~~i~  252 (387)
T 1zmr_A          178 LKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDEAKRLLTT-----CNIP  252 (387)
T ss_dssp             HSSCSSSEEEEEEESCTTTTHHHHHHHHTTCSEEEEEEHHHHHHHHHTTCCCTTCSCCGGGHHHHHHHHTT-----SCCC
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHHHhcCEEEeCcHHHHHHHHHcCCCCCccccchhhHHHHHHHHHh-----CCcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999976     8999


Q ss_pred             cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (416)
Q Consensus        82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (416)
                      ||+|++|++++ .+.+..++++++||+|||++||||+|++.|++++..|+||+|||||||||+++|+.||++++++++++
T Consensus       253 lPvD~vva~~f~~~~~~~~~~~~~ip~~~m~lDiGp~T~~~~~~~i~~akTivWNGPmGvFE~~~Fa~GT~~va~aia~~  332 (387)
T 1zmr_A          253 VPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADS  332 (387)
T ss_dssp             CCSEEEEESSSSSSCCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHHHCSEEEEESCSBCTTSGGGCHHHHHHHHHHHHS
T ss_pred             CCccceeeeccCCCCceEEeehhhCCCCCEEeecCHHHHHHHHHHHhhCCEEEEECCcccccCchHHHHHHHHHHHHHhc
Confidence            99999999886 44566677889999999999999999999999999999999999999999999999999999999985


Q ss_pred             hcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccc
Q 014919          161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (416)
Q Consensus       161 ~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~  214 (416)
                         + .+||+|||+   ++..+|+.++++|+||  ||||+||||+|+.+|++++|.+
T Consensus       333 ---~-~~sivGGGDt~aav~~~g~~d~~shiST--GGGA~Le~LeGk~LPgv~aL~~  383 (387)
T 1zmr_A          333 ---E-AFSIAGGGDTLAAIDLFGIADKISYIST--GGGAFLEFVEGKVLPAVAMLEE  383 (387)
T ss_dssp             ---S-SEEEECSHHHHHHHHHHTCGGGSSEECC--CTHHHHHHHTTCCCHHHHHHHH
T ss_pred             ---C-CeEEECCHHHHHHHHHcCCccCceEEeC--ChHHHHHHHcCCCCchHHHHHh
Confidence               2 389999986   4457889899999999  8999999999999999999865

>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.9e-61  Score=478.65  Aligned_cols=200  Identities=18%  Similarity=0.257  Sum_probs=186.6

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHh--cCeEEEehHHHHHHHHHcCCCCCCc---cccc----CchHHHHHHHHH
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASR--CDGLIFVGLMSFQIMHALGLPVPPE---LVEK----GANDAASDLIQF   72 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~--~d~~~~gG~~a~~fl~a~g~~ig~s---~~e~----~~~~~a~~~~~~   72 (416)
                      +++|+||++||+|||||||||++|+||+++  ||+|||||+||||||+|+|++||+|   ++|+    +.++.|++|+++
T Consensus       185 l~~p~rP~vaIlGGaKVsdKi~vi~nLl~k~~vD~liiGGgma~tFl~A~G~~iG~S~~~l~E~~g~~d~~~~a~~ll~k  264 (410)
T 2cun_A          185 YYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKKKGLLDYVKHAEEILDE  264 (410)
T ss_dssp             HTCCCSCEEEEECSSCHHHHHHHHHHHHHTTSCSEEEECHHHHHHHHHHHTCCCCHHHHHHHHTTTGGGGHHHHHHHHHH
T ss_pred             hcCCCCCeEEEEcCcchhhHHHHHHHHhcccCCCEEEEChHHHHHHHHHcCCCcCcchhhhhhcccchhhHHHHHHHHHh
Confidence            589999999999999999999999999999  9999999999999999999999999   9999    999999999999


Q ss_pred             HhhCCCeeecceeEEEecCCCCCceeeecCCC-----CCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCC
Q 014919           73 ARDKHITILYPKDFWCTKIHHPNQVEIFPSHG-----IPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYS  147 (416)
Q Consensus        73 ~~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~-----i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~  147 (416)
                      +   |++|+||+|++|+++   .+..++++++     || |||++||||+|++.|++++..|+||+|||||||||+++|+
T Consensus       265 a---g~~i~lPvD~vva~~---a~~~~~~~~~~~~~~ip-~~m~lDiGp~T~~~~~~~i~~akTIvWNGPmGvFE~~~Fa  337 (410)
T 2cun_A          265 F---YPYIRTPVDFAVDYK---GERVEIDLLSENRGLLH-QYQIMDIGKRTAEKYREILMKARIIVANGPMGVFEREEFA  337 (410)
T ss_dssp             H---GGGEECCSEEEEEET---TEEEEEESSSGGGGGGG-TSCEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGC
T ss_pred             c---cCeEeCCceeEEecC---CCeEEEecccccccCCC-CCeeeeeCHHHHHHHHHHHhhCCEEEEECCcccccCchHH
Confidence            9   899999999999987   3455677887     99 9999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhhhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCccccccc
Q 014919          148 NGASKLTGMLCKVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA  215 (416)
Q Consensus       148 ~GT~~l~~~~a~~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~~  215 (416)
                      .||++++++++++   + .+||+|||+   ++..+|+ ++++|+||  ||||+||||+|+.+|++++|.+.
T Consensus       338 ~GT~~va~aia~~---~-~~sivGGGDt~aav~~~g~-d~~shiST--GGGA~Le~LeGk~LPgv~aL~~~  401 (410)
T 2cun_A          338 IGTVEVFKAIADS---P-AFSVLGGGHSIASIQKYGI-TGITHIST--GGGAMLSFFAGEELPVLRALQIS  401 (410)
T ss_dssp             HHHHHHHHHHHHS---S-SEEEEECGGGGGGGGGSCC-CCCSEECS--CSHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc---C-CeEEECChHHHHHHHHhCC-CCcEEEcC--ChHHHHHHHcCCCCcHHHHHHHH
Confidence            9999999999985   2 389999886   4457888 89999999  89999999999999999999754

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.98  E-value=7e-32  Score=252.03  Aligned_cols=183  Identities=22%  Similarity=0.358  Sum_probs=158.0

Q ss_pred             ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhc
Q 014919          219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVA  294 (416)
Q Consensus       219 ~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~  294 (416)
                      +.+|.+.|++ ++++|||||||+|.++..+|+.+|+.+|+|||++.    .|+++++..+++|++|+++|+.++++..+ 
T Consensus        24 ~~d~~~~f~~-~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~-  101 (218)
T 3dxy_A           24 MLDFPALFGR-EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMI-  101 (218)
T ss_dssp             CCCHHHHHSS-CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHS-
T ss_pred             CCCHHHHcCC-CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHc-
Confidence            4578888987 58999999999999999999999999999999754    45556666789999999999999766545 


Q ss_pred             cCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeecccccc
Q 014919          295 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT  374 (416)
Q Consensus       295 ~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  374 (416)
                       +++++|.|+++||+||++.+|+++|++++.++++++++|||||.|++.||+..|++++.+.+.+...+. .+.      
T Consensus       102 -~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~-~~~------  173 (218)
T 3dxy_A          102 -PDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYK-NLS------  173 (218)
T ss_dssp             -CTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEE-ECC------
T ss_pred             -CCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCcc-ccc------
Confidence             588999999999999999999999999999999999999999999999999999999999998765332 221      


Q ss_pred             ccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014919          375 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS  413 (416)
Q Consensus       375 ~~~~~~~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~k~~  413 (416)
                        ...+|...+..++.|+||+|+.++|+.||+++|+|++
T Consensus       174 --~~~~~~~~~~~~~~t~fE~k~~~~G~~~~~~~~~~~~  210 (218)
T 3dxy_A          174 --ESNDYVPRPASRPVTKFEQRGHRLGHGVWDLMFERVK  210 (218)
T ss_dssp             --TTSSCBCCCTTSCCCTTCCTTCTTCCSCEEEEEEECC
T ss_pred             --CcCccCCCCCCCCCcHHHHHHHHCCCCeEEEEEEEcc
Confidence              1124555666789999999999999999999999975

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.97  E-value=1.7e-31  Score=248.12  Aligned_cols=181  Identities=19%  Similarity=0.405  Sum_probs=155.5

Q ss_pred             ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhc
Q 014919          219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVA  294 (416)
Q Consensus       219 ~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~  294 (416)
                      ..+|.+.|++ ++++|||||||+|.++..||+.+|+.+++|+|++..    |.++++..+++|++++++|+.++ +..+ 
T Consensus        28 ~~~~~~~f~~-~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l-~~~~-  104 (213)
T 2fca_A           28 KGKWNTVFGN-DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL-TDVF-  104 (213)
T ss_dssp             TTCHHHHHTS-CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH-HHHC-
T ss_pred             CCCHHHHcCC-CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHH-Hhhc-
Confidence            4578888876 579999999999999999999999999999997554    44555566889999999999986 4444 


Q ss_pred             cCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeecccccc
Q 014919          295 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT  374 (416)
Q Consensus       295 ~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  374 (416)
                       +++++|.|+++||+||++.+|+++|++++.++++++++|||||.|++.||+..+++++.+.+.++++.......|    
T Consensus       105 -~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~~~~~d----  179 (213)
T 2fca_A          105 -EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYVSLD----  179 (213)
T ss_dssp             -CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESS----
T ss_pred             -CcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccccccc----
Confidence             578999999999999999999999999999999999999999999999999999999999999988765444434    


Q ss_pred             ccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeC
Q 014919          375 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP  412 (416)
Q Consensus       375 ~~~~~~~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~k~  412 (416)
                       ++.    ..++..++|+||+++.++|++||++.|+|+
T Consensus       180 -~~~----~~~~~~~~t~~E~~~~~~G~~i~~~~~~~~  212 (213)
T 2fca_A          180 -LHN----SNLEGNIMTEYEEKFSALGQPIYRAEVEWR  212 (213)
T ss_dssp             -GGG----SSCTTCCCCTTGGGSSSSSCCCEEEEEECC
T ss_pred             -ccc----ccCCCCCCcHHHHHHHHCCCCeEEEEEEEC
Confidence             222    134668899999999999999999999986

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=239.13  Aligned_cols=176  Identities=23%  Similarity=0.352  Sum_probs=135.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HH------hCCCcEEEEEcChhhhhhhhhccCCCc
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QL------SGITNGYFIATNATSTFRSIVASYPGK  299 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~------~~l~nv~f~~~Da~~l~~~~~~~~~~s  299 (416)
                      ..++|||||||+|.++..||+.+|+.+++|||++..+++.+    +.      .++.|++++++|+...++..|  ++++
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~--~~~~  123 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF--YKGQ  123 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHC--CTTC
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhC--CCcC
Confidence            46799999999999999999999999999999765544433    22      357899999999987445545  5789


Q ss_pred             eeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeeccccccccCCC
Q 014919          300 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQG  379 (416)
Q Consensus       300 ~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  379 (416)
                      +|.|+++|||||++.+|+|||++++.++++++++|||||.|++.||+..|.++|.+.+.+++.+. ....+     .+.+
T Consensus       124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~-~~~~~-----~~~~  197 (235)
T 3ckk_A          124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFE-RVPLE-----DLSE  197 (235)
T ss_dssp             EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEE-EECGG-----GGTT
T ss_pred             eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc-ccCch-----hccc
Confidence            99999999999999999999999999999999999999999999999999999999999988543 23222     1223


Q ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCCC
Q 014919          380 GWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSC  414 (416)
Q Consensus       380 ~~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~k~~~  414 (416)
                      .|. .+...+.|+||+|+.++|+++|+++|+|+..
T Consensus       198 ~~~-~~~~~~~t~~e~k~~~~G~~~~~~~f~r~~~  231 (235)
T 3ckk_A          198 DPV-VGHLGTSTEEGKKVLRNGGKNFPAIFRRIQD  231 (235)
T ss_dssp             CTT-GGGTTTSSHHHHHHHHTTCCCEEEEEEECCC
T ss_pred             Ccc-ccCCCCCCHHHHHHHHCCCCeEEEEEEECCC
Confidence            342 2345678999999999999999999999864

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.96  E-value=8.2e-29  Score=229.22  Aligned_cols=180  Identities=18%  Similarity=0.397  Sum_probs=153.4

Q ss_pred             ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhc
Q 014919          219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVA  294 (416)
Q Consensus       219 ~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~  294 (416)
                      ...|.+.|+. .+++|||||||+|.++..+|+.+|+.+++|+|++..    |.+++...+++|++++++|+.++ ++.+ 
T Consensus        31 ~~~~~~~f~~-~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~-  107 (214)
T 1yzh_A           31 KAKWRDLFGN-DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL-TDYF-  107 (214)
T ss_dssp             TTTHHHHHTS-CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG-GGTS-
T ss_pred             ccCHHHHcCC-CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHH-Hhhc-
Confidence            3468778875 578999999999999999999999999999997544    44555567888999999999885 3333 


Q ss_pred             cCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeecccccc
Q 014919          295 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT  374 (416)
Q Consensus       295 ~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  374 (416)
                       +++++|.|+++||+||++.+|+++|+.++.+++++.++|+|||.+++.||+..+++++.+.+.++++.......|    
T Consensus       108 -~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~d----  182 (214)
T 1yzh_A          108 -EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLD----  182 (214)
T ss_dssp             -CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESS----
T ss_pred             -CCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeecccc----
Confidence             477899999999999999999999999999999999999999999999999999999999999999876555444    


Q ss_pred             ccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEe
Q 014919          375 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSK  411 (416)
Q Consensus       375 ~~~~~~~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~k  411 (416)
                       ++.    ...+..+.|+||+++.++|++||+++|++
T Consensus       183 -~~~----~~~~~~~~t~~e~~~~~~g~~i~~~~~~~  214 (214)
T 1yzh_A          183 -LHA----SDFEGNVMTEYEQKFSNKGQVIYRVEAEF  214 (214)
T ss_dssp             -GGG----SCCCCCCCCHHHHHTGGGCCCCEEEEEEC
T ss_pred             -ccc----cCCCCCCCcHHHHHHHHCCCCeEEEEEEC
Confidence             222    13466889999999999999999999974

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.95  E-value=3e-27  Score=223.80  Aligned_cols=187  Identities=17%  Similarity=0.267  Sum_probs=145.0

Q ss_pred             cccccccCC---------CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHh--------CCCcE
Q 014919          220 IDWSAAYHD---------PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLS--------GITNG  278 (416)
Q Consensus       220 ~~~~~~f~~---------~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~--------~l~nv  278 (416)
                      .+|.+.|++         ..+.+|||||||+|.+++.+|+.+|+.+++|+|++..+++    +++..        +++|+
T Consensus        30 ~~w~~~f~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv  109 (246)
T 2vdv_E           30 MDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNI  109 (246)
T ss_dssp             CCGGGTCGGGBC----CBSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTE
T ss_pred             CCHHHHhCcccccccccCCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcE
Confidence            478888875         2468999999999999999999999999999997655444    33333        77899


Q ss_pred             EEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHH
Q 014919          279 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL  358 (416)
Q Consensus       279 ~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~  358 (416)
                      +++++|+.+.++..+  .++++|.|+++|||||++.+|+++|++++.+++++.++|+|||.|++.||+..|.+++.+.+.
T Consensus       110 ~~~~~D~~~~l~~~~--~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~  187 (246)
T 2vdv_E          110 NVLRGNAMKFLPNFF--EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLE  187 (246)
T ss_dssp             EEEECCTTSCGGGTS--CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred             EEEeccHHHHHHHhc--cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHH
Confidence            999999987545445  578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCceeeeccccccccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCCCC
Q 014919          359 EYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCV  415 (416)
Q Consensus       359 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~k~~~~  415 (416)
                      +++++ .....+     .+..+| +.....+.|+||+++.++|.++|+++|+|++..
T Consensus       188 ~~~~~-~~~~~~-----~~~~d~-~~~~~~~~t~~e~k~~~~g~~~~~~~~~k~~~~  237 (246)
T 2vdv_E          188 EHPLF-ERLSKE-----WEENDE-CVKIMRNATEEGKKVERKKGDKFVACFTRLPTP  237 (246)
T ss_dssp             HSTTE-EECCHH-----HHHTCH-HHHHHHHSSHHHHHHHHTTCCCEEEEEEECCCC
T ss_pred             hCcCe-EecCcc-----ccccCc-ccccCCCCCHHHHHHHHCCCCeEEEEEEECCCc
Confidence            98863 222211     111111 001123569999999999999999999998653

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.60  E-value=8.4e-16  Score=143.61  Aligned_cols=113  Identities=17%  Similarity=0.212  Sum_probs=86.8

Q ss_pred             cccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH-H-------HHHHHHHHhCCCcEEEEEcChhhhhhhhh
Q 014919          222 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV-T-------HCRDSLQLSGITNGYFIATNATSTFRSIV  293 (416)
Q Consensus       222 ~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~-~-------~a~~~a~~~~l~nv~f~~~Da~~l~~~~~  293 (416)
                      |.+.+.. .+.+|||||||+|.++..||++.|+.+++|||++ .       .|.+++.+.+++|++|+++|+.++ +..+
T Consensus        17 ~~~~~~~-~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~   94 (225)
T 3p2e_A           17 LTEIIGQ-FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFEL   94 (225)
T ss_dssp             HHHHHTT-CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGG
T ss_pred             HHHHhCC-CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhc
Confidence            3344444 4689999999999999999999999999999986 2       224444456788999999999987 3322


Q ss_pred             ccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          294 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       294 ~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                         .+.+|.++++||.|+  . +...+...+.++++++|+|||||++++
T Consensus        95 ---~d~v~~i~~~~~~~~--~-~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           95 ---KNIADSISILFPWGT--L-LEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             ---TTCEEEEEEESCCHH--H-HHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             ---cCeEEEEEEeCCCcH--H-hhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence               378999999976443  2 333344457899999999999999998

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.52  E-value=1.5e-14  Score=138.15  Aligned_cols=125  Identities=15%  Similarity=0.164  Sum_probs=90.5

Q ss_pred             cccCCCCcccccccCccccccccccCCCCCCeEEEEeccccHHHHHHHHhC--CCCeEEEEchHHHHHHHH----HHhCC
Q 014919          202 KGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKR--KDLNFLGLELVTHCRDSL----QLSGI  275 (416)
Q Consensus       202 ~gr~lPg~~aL~~~~p~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~--p~~~~iGvD~~~~a~~~a----~~~~l  275 (416)
                      -.|+.|+++.+.+..   ..+.+.+.. .+.+|||||||+|.++..||++.  |+++++|||+++.+++.+    ...+.
T Consensus        46 i~rsvP~Y~~~~~~i---~~l~~~~~~-~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~  121 (261)
T 4gek_A           46 IQRSVPGYSNIISMI---GMLAERFVQ-PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA  121 (261)
T ss_dssp             HHHHSTTHHHHHHHH---HHHHHHHCC-TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC
T ss_pred             HhhcCCCHHHHHHHH---HHHHHHhCC-CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc
Confidence            346778876554332   234444544 47899999999999999999974  678999999766555444    33444


Q ss_pred             -CcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          276 -TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       276 -~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                       .||+|+++|+.++     |  .+++|.|++++...|.....      ...+|++++++|||||.|++.
T Consensus       122 ~~~v~~~~~D~~~~-----~--~~~~d~v~~~~~l~~~~~~~------~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          122 PTPVDVIEGDIRDI-----A--IENASMVVLNFTLQFLEPSE------RQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             SSCEEEEESCTTTC-----C--CCSEEEEEEESCGGGSCHHH------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEeecccccc-----c--ccccccceeeeeeeecCchh------HhHHHHHHHHHcCCCcEEEEE
Confidence             4799999999876     3  45699999887654432111      137899999999999999885

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.49  E-value=2e-13  Score=130.77  Aligned_cols=155  Identities=12%  Similarity=0.012  Sum_probs=112.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHHHH----HHHh-CCCcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDS----LQLS-GITNGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~~~----a~~~-~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||+|||+|.++..+++. .|..+++|+|++..+++.    ++.. +.+|++++++|+.+.    +  ++++||.|
T Consensus       110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~----~--~~~~fD~V  183 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF----I--SDQMYDAV  183 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC----C--CSCCEEEE
T ss_pred             CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc----C--cCCCccEE
Confidence            4679999999999999999998 788999999976555444    4444 778999999998763    2  36789999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeeccccccccCCCCCCC
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG  383 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  383 (416)
                      +++.|+||             .+++++.++|||||.+++.+......+.+.+.+++.+|........      -...|..
T Consensus       184 i~~~~~~~-------------~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~~~------~~~~~~~  244 (275)
T 1yb2_A          184 IADIPDPW-------------NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVEL------MKRRILV  244 (275)
T ss_dssp             EECCSCGG-------------GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEEE------EECCCCC
T ss_pred             EEcCcCHH-------------HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEEEE------ecceeEe
Confidence            99877664             6899999999999999999888767777778888888754433211      1122321


Q ss_pred             CCCCCCCCHHHHHHHHCCCCeEEEEEEeCCC
Q 014919          384 ENSFGVRSDWEQHVIDRGAPMYRLMLSKPSC  414 (416)
Q Consensus       384 ~~~~~~~T~~E~k~~~~G~~i~~~~~~k~~~  414 (416)
                      ... ......    ...|++.|-+..+|.+.
T Consensus       245 ~~~-~~rp~~----~~~~~~~~li~ark~~~  270 (275)
T 1yb2_A          245 REG-ATRPAS----DDLTHTAFITFAIKKSG  270 (275)
T ss_dssp             CTT-CCCCGG----GGSCEEEEEEEEEECCS
T ss_pred             cCC-cccccc----ccCCCcEEEEEEEehhc
Confidence            111 111111    14577888888888765

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.48  E-value=8.4e-13  Score=120.22  Aligned_cols=117  Identities=16%  Similarity=0.154  Sum_probs=95.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+|+..|..+++|+|++..    |.++++..+++|++++++|+.+.+.     ..+++|.|++
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~D~i~~  114 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-----DLPDPDRVFI  114 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-----TSCCCSEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-----cCCCCCEEEE
Confidence            468999999999999999999999999999997554    4445555678899999999976522     2367999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCC
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK  362 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~  362 (416)
                      ..+.+           ....+++++.++|+|||.+++.+......+.+.+.+++.++
T Consensus       115 ~~~~~-----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~  160 (204)
T 3e05_A          115 GGSGG-----------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY  160 (204)
T ss_dssp             SCCTT-----------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred             CCCCc-----------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence            75432           12489999999999999999988777778888889999987

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.46  E-value=2.8e-13  Score=127.34  Aligned_cols=102  Identities=16%  Similarity=0.142  Sum_probs=82.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC-CCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+.+|||||||+|.++..+++..+. +++|+|++..+++.+++.. ..++.++++|+.++     ++++++||.|++...
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~~~  117 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDI-----AIEPDAYNVVLSSLA  117 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGC-----CCCTTCEEEEEEESC
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhC-----CCCCCCeEEEEEchh
Confidence            4689999999999999999998654 9999999888777766543 46899999999876     435789999999864


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      -.+...        ...++++++++|||||.+++.+.
T Consensus       118 l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A          118 LHYIAS--------FDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             GGGCSC--------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhhhh--------HHHHHHHHHHHcCCCcEEEEEeC
Confidence            433311        14899999999999999999753

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.46  E-value=3.9e-13  Score=126.42  Aligned_cols=118  Identities=14%  Similarity=0.014  Sum_probs=96.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHHH----HHHHh-CCCcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRD----SLQLS-GITNGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~~----~a~~~-~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||+|||+|.++..+++. .|..+++|+|++..+++    +++.. +.+|+.+.++|+.+.     +++++++|.|
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~-----~~~~~~~D~v  170 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA-----ELEEAAYDGV  170 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC-----CCCTTCEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc-----CCCCCCcCEE
Confidence            4679999999999999999998 67899999997554444    44444 778999999999875     2246789999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      +++.|+||             .+++++.++|+|||.+++.+........+.+.+++.+|...
T Consensus       171 ~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~  219 (258)
T 2pwy_A          171 ALDLMEPW-------------KVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLE  219 (258)
T ss_dssp             EEESSCGG-------------GGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEE
T ss_pred             EECCcCHH-------------HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceE
Confidence            99887775             68999999999999999988877777778888888776543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.45  E-value=6.4e-13  Score=125.11  Aligned_cols=117  Identities=15%  Similarity=0.245  Sum_probs=97.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHH----HHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVT----HCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~----~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||+|||+|.++..+++. .|..+++|+|++.    .|.++++..+++| ++++++|+.+.    +  +++++|.|
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~~~~~D~v  166 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG----I--EEENVDHV  166 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC----C--CCCSEEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc----c--CCCCcCEE
Confidence            4679999999999999999999 8899999999754    4455555668777 99999999864    2  46789999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCC--CCce
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG--KGKL  365 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~--~~~~  365 (416)
                      +++.|+||             .+++++.++|+|||.+++.+...+....+.+.+++++  |...
T Consensus       167 ~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~  217 (255)
T 3mb5_A          167 ILDLPQPE-------------RVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKP  217 (255)
T ss_dssp             EECSSCGG-------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCC
T ss_pred             EECCCCHH-------------HHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcccc
Confidence            99877775             6899999999999999998877777888888899888  6543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.45  E-value=4e-13  Score=123.56  Aligned_cols=127  Identities=12%  Similarity=0.122  Sum_probs=90.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHH----HhCCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQ----LSGITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~----~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      .+.+|||||||+|.++..+|+++|+.+++|+|++..+++    +++    ..+++|++|+++|+.++     |+.+++ |
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l-----~~~~~~-d  100 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL-----PPLSGV-G  100 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC-----CSCCCE-E
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC-----CCCCCC-C
Confidence            468899999999999999999999999999997654332    222    35677999999999886     435667 8


Q ss_pred             EEEEECCCCCCCCc-chhhhhhhHHHHHHHHhhccCCcEEEEEeC-----------------cHHHH-HHHHHHHHhCCC
Q 014919          302 LVSIQCPNPDFNRP-EHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-----------------IEEVM-LRMKQQFLEYGK  362 (416)
Q Consensus       302 ~v~~~fpdpw~k~~-h~krRl~~~~~l~~i~r~LkpgG~l~l~tD-----------------~~~~~-~~~~~~~~~~~~  362 (416)
                      .+++.++  |.... |+-.  -...++++++++|||||.+++...                 ...+. +.+.+.+.+.||
T Consensus       101 ~v~~~~~--~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf  176 (218)
T 3mq2_A          101 ELHVLMP--WGSLLRGVLG--SSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGW  176 (218)
T ss_dssp             EEEEESC--CHHHHHHHHT--SSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTE
T ss_pred             EEEEEcc--chhhhhhhhc--cHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCC
Confidence            8887754  32110 0100  014889999999999999999631                 12232 335667888888


Q ss_pred             Ccee
Q 014919          363 GKLV  366 (416)
Q Consensus       363 ~~~~  366 (416)
                      ....
T Consensus       177 ~i~~  180 (218)
T 3mq2_A          177 KLAD  180 (218)
T ss_dssp             EEEE
T ss_pred             Ccee
Confidence            6544

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.44  E-value=1.5e-12  Score=115.26  Aligned_cols=119  Identities=15%  Similarity=0.145  Sum_probs=93.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+++.+|..+++|+|++..++    +++...+++ |+ ++++|+.+.+    +..+++||.|+
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~----~~~~~~~D~i~   99 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAF----DDVPDNPDVIF   99 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGG----GGCCSCCSEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhh----hccCCCCCEEE
Confidence            35799999999999999999999999999999755444    444455776 89 8899986542    21237899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      ++++..+            ..+++++.++|+|||.+++.+...+....+.+.+++.++...
T Consensus       100 ~~~~~~~------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~  148 (178)
T 3hm2_A          100 IGGGLTA------------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTIS  148 (178)
T ss_dssp             ECC-TTC------------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEE
T ss_pred             ECCcccH------------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeE
Confidence            8865443            278999999999999999988777777777888888876543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.44  E-value=5.9e-13  Score=120.77  Aligned_cols=122  Identities=15%  Similarity=0.100  Sum_probs=93.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      +.+|||||||+|.++..+++.  ..+++|+|++..+++.++++ ..|++++++|+.++     ++++++||.|+++..-.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~d~~~~-----~~~~~~fD~v~~~~~l~  113 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQT-HPSVTFHHGTITDL-----SDSPKRWAGLLAWYSLI  113 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHH-CTTSEEECCCGGGG-----GGSCCCEEEEEEESSST
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHh-CCCCeEEeCccccc-----ccCCCCeEEEEehhhHh
Confidence            678999999999999999988  56999999988888777655 46899999999886     33578999999986554


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH---------------HHHHHHHHHHhCCCCcee
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE---------------VMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~---------------~~~~~~~~~~~~~~~~~~  366 (416)
                      +.....      ...+++++.++|||||.+++.+-...               -.+++.+.+++.||....
T Consensus       114 ~~~~~~------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  178 (203)
T 3h2b_A          114 HMGPGE------LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTS  178 (203)
T ss_dssp             TCCTTT------HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEE
T ss_pred             cCCHHH------HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEE
Confidence            432111      24899999999999999998752211               145566777777776443

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.43  E-value=1.4e-12  Score=122.12  Aligned_cols=121  Identities=15%  Similarity=0.101  Sum_probs=90.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||||||+|.+++.+|+..|+.+++|+|++..    |.++++..+++|++++++|+.++...  +..+++||.|++.
T Consensus        71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~~~fD~V~~~  148 (240)
T 1xdz_A           71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR--KDVRESYDIVTAR  148 (240)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC--TTTTTCEEEEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc--ccccCCccEEEEe
Confidence            67999999999999999999889999999997554    44445566888999999999876210  0015789999987


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC--cHHHHHHHHHHHHhCCCCce
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--IEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD--~~~~~~~~~~~~~~~~~~~~  365 (416)
                      ....            ...+++.+.++|+|||.+++...  ...-...+.+.+++.++...
T Consensus       149 ~~~~------------~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~  197 (240)
T 1xdz_A          149 AVAR------------LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELE  197 (240)
T ss_dssp             CCSC------------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEE
T ss_pred             ccCC------------HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEe
Confidence            4211            14899999999999999988632  23334456667788877543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.42  E-value=4.2e-13  Score=125.88  Aligned_cols=129  Identities=11%  Similarity=-0.078  Sum_probs=92.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh---CCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~---~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+.+|||||||+|.++..+++..|. +++|||++..+++.+++.   ...+++++.+|+.++..   ++++++||.|++ 
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~FD~i~~-  134 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAP---TLPDGHFDGILY-  134 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGG---GSCTTCEEEEEE-
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcc---cccccCCceEEE-
Confidence            4789999999999999999988764 899999866655555432   33579999999988743   235789999964 


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC--------------cHHHHHHHHHHHHhCCCCce
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--------------IEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD--------------~~~~~~~~~~~~~~~~~~~~  365 (416)
                        |++....+..+....+.++++++|+|||||+|.+...              ...+.+.....|.+.||...
T Consensus       135 --D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~  205 (236)
T 3orh_A          135 --DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRE  205 (236)
T ss_dssp             --CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGG
T ss_pred             --eeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEE
Confidence              6665544444444456899999999999999987421              01233334456677787643

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.42  E-value=2.6e-12  Score=117.79  Aligned_cols=117  Identities=15%  Similarity=0.098  Sum_probs=93.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+|+.  ..+++|+|++..    |.++++..+++ |++++++|+.+.++     ...+||.|+
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-----~~~~~D~v~  127 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA-----DLPLPEAVF  127 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT-----TSCCCSEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc-----cCCCCCEEE
Confidence            4689999999999999999998  789999997544    44555566887 99999999988522     235799998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~  366 (416)
                      +....            ..+ +++++.++|||||++++.+...+....+.+.+++.++....
T Consensus       128 ~~~~~------------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~  176 (204)
T 3njr_A          128 IGGGG------------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLR  176 (204)
T ss_dssp             ECSCC------------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEE
T ss_pred             ECCcc------------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEE
Confidence            76321            113 89999999999999999988877888888899988865443

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.42  E-value=2e-13  Score=130.19  Aligned_cols=97  Identities=12%  Similarity=0.027  Sum_probs=81.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      ...+|||||||+|.++..|++..  .+++|+|++..+++.++  ..+|+.++++|+.++     |+++++||.|++...-
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~--~~~~v~~~~~~~e~~-----~~~~~sfD~v~~~~~~  109 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQAL--RHPRVTYAVAPAEDT-----GLPPASVDVAIAAQAM  109 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCC--CCTTEEEEECCTTCC-----CCCSSCEEEEEECSCC
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhh--hcCCceeehhhhhhh-----cccCCcccEEEEeeeh
Confidence            35789999999999999999885  58999999988877653  346899999999887     5578999999998666


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .|+.         .+.++++++|+|||||.|.+.+
T Consensus       110 h~~~---------~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          110 HWFD---------LDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             TTCC---------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHhh---------HHHHHHHHHHHcCCCCEEEEEE
Confidence            6642         2478999999999999998753

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.42  E-value=1.5e-12  Score=124.20  Aligned_cols=116  Identities=16%  Similarity=0.208  Sum_probs=94.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHHH----HHHHh-C--CCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRD----SLQLS-G--ITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~~----~a~~~-~--l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      .+.+|||+|||+|.++..+++. .|..+++|+|++..+++    +++.. +  ..|++++++|+.+.     ++++++||
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-----~~~~~~~D  173 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-----ELPDGSVD  173 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-----CCCTTCEE
T ss_pred             CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-----CCCCCcee
Confidence            3679999999999999999986 57889999997554444    44444 5  67899999999875     22467899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHh-CCCC
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE-YGKG  363 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~-~~~~  363 (416)
                      .|+++.++||             .+++++.++|+|||.+++.+...+....+.+.+.+ .+|.
T Consensus       174 ~v~~~~~~~~-------------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~  223 (280)
T 1i9g_A          174 RAVLDMLAPW-------------EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT  223 (280)
T ss_dssp             EEEEESSCGG-------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred             EEEECCcCHH-------------HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence            9999988887             67999999999999999998887777777777776 5554

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.42  E-value=1.4e-13  Score=126.13  Aligned_cols=101  Identities=10%  Similarity=0.042  Sum_probs=76.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-C---------------CCcEEEEEcChhhhhhhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-G---------------ITNGYFIATNATSTFRSIV  293 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-~---------------l~nv~f~~~Da~~l~~~~~  293 (416)
                      .+.+|||+|||+|..+..||++  ..+++|+|+++.+++.+++. +               ..|++|+++|+.++     
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l-----   94 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL-----   94 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS-----
T ss_pred             CCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC-----
Confidence            4689999999999999999998  57999999988887776543 2               35899999999887     


Q ss_pred             ccCC-CceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          294 ASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       294 ~~~~-~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ++.+ ++||.|+..+.-.+...  .    ....++++++|+|||||++++.
T Consensus        95 ~~~~~~~fD~v~~~~~l~~l~~--~----~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           95 TARDIGHCAAFYDRAAMIALPA--D----MRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             THHHHHSEEEEEEESCGGGSCH--H----HHHHHHHHHHHHSCSEEEEEEE
T ss_pred             CcccCCCEEEEEECcchhhCCH--H----HHHHHHHHHHHHcCCCcEEEEE
Confidence            2123 68999997643322211  0    1247899999999999985544

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.41  E-value=2.4e-12  Score=119.30  Aligned_cols=103  Identities=15%  Similarity=0.191  Sum_probs=81.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+.+|||||||+|.++..+++.+|..+++|+|++..+++.+++.  ...|++++++|+.++     +. +++||.|+++.
T Consensus        44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-----~~-~~~fD~v~~~~  117 (234)
T 3dtn_A           44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKY-----DF-EEKYDMVVSAL  117 (234)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTC-----CC-CSCEEEEEEES
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhcc-----CC-CCCceEEEEeC
Confidence            46899999999999999999999999999999887777666543  223899999999886     32 38999999986


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +-.+....      ....++++++++|||||.+++.+
T Consensus       118 ~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          118 SIHHLEDE------DKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             CGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCCHH------HHHHHHHHHHHhcCCCcEEEEEE
Confidence            54432111      11368999999999999999864

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.40  E-value=1e-12  Score=120.46  Aligned_cols=123  Identities=9%  Similarity=0.101  Sum_probs=93.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+++.. |..+++|+|++..    +.+++...+++|++++++|+.++     ++++++||.|+
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~  111 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKI-----PLPDNTVDFIF  111 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBC-----SSCSSCEEEEE
T ss_pred             CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccC-----CCCCCCeeEEE
Confidence            46799999999999999999996 8889999997544    44455556778999999999876     33578999999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----------H--HHHHHHHHHHHhCCCCce
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----------E--EVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----------~--~~~~~~~~~~~~~~~~~~  365 (416)
                      ++..-.+..+        ...+++++.++|+|||.+++.+-.          .  -..+.+.+.+++.||...
T Consensus       112 ~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  176 (219)
T 3dh0_A          112 MAFTFHELSE--------PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVG  176 (219)
T ss_dssp             EESCGGGCSS--------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEE
T ss_pred             eehhhhhcCC--------HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEE
Confidence            8855443321        148999999999999999986311          0  013556778888888644

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.39  E-value=1.3e-12  Score=121.40  Aligned_cols=100  Identities=14%  Similarity=0.152  Sum_probs=82.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-CCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+.+|||||||+|.++..+++.  ..+++|+|++..+++.+++. ...|+.++++|+.++     ++++++||.|+++..
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~~~  125 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSL-----PFENEQFEAIMAINS  125 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBC-----SSCTTCEEEEEEESC
T ss_pred             CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcC-----CCCCCCccEEEEcCh
Confidence            3689999999999999999998  66999999988888877654 346899999999876     335789999998865


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      -.+....        ..++++++++|+|||.+++.+
T Consensus       126 l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          126 LEWTEEP--------LRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             TTSSSCH--------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhhccCH--------HHHHHHHHHHhCCCeEEEEEE
Confidence            5443221        378999999999999999975

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.38  E-value=3e-12  Score=122.54  Aligned_cols=119  Identities=12%  Similarity=0.138  Sum_probs=96.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHH----HHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCR----DSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~----~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||+|||+|.++..+++. .|..+++++|++..++    ++++..++ +|++++++|+.+.    +  ++++||.|
T Consensus       112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--~~~~~D~V  185 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG----F--DEKDVDAL  185 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC----C--SCCSEEEE
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc----c--cCCccCEE
Confidence            3679999999999999999998 6889999999755444    44444566 6899999998765    2  35789999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  367 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~  367 (416)
                      +++.|+||             .+++++.++|+|||.+++.+........+.+.+++.+|.....
T Consensus       186 ~~~~~~~~-------------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~  236 (277)
T 1o54_A          186 FLDVPDPW-------------NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEV  236 (277)
T ss_dssp             EECCSCGG-------------GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEE
T ss_pred             EECCcCHH-------------HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEE
Confidence            99877775             6789999999999999998887667777888888888754433

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.38  E-value=2.4e-12  Score=117.28  Aligned_cols=99  Identities=14%  Similarity=0.241  Sum_probs=79.0

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+|||||||+|.++..++++ |+.+++|+|++..+    .+++...++. |++++++|+.++     ++++++||.|+++
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~v~~~  118 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI-----PIEDNYADLIVSR  118 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC-----SSCTTCEEEEEEE
T ss_pred             CEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC-----CCCcccccEEEEC
Confidence            49999999999999999998 88899999975544    4444455654 799999999876     3357899999998


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ..-.+...        ...++++++++|+|||.+++..
T Consensus       119 ~~l~~~~~--------~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          119 GSVFFWED--------VATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             SCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chHhhccC--------HHHHHHHHHHhCCCCCEEEEEe
Confidence            65444321        1479999999999999999963

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.38  E-value=2.9e-12  Score=114.62  Aligned_cols=107  Identities=15%  Similarity=0.110  Sum_probs=77.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|||+|.++..+|++  ..+++|+|++..    |.++++..+++|+++++.|+..+ ...   .+++||.|++
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l-~~~---~~~~fD~v~~   95 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENL-DHY---VREPIRAAIF   95 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGG-GGT---CCSCEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHH-Hhh---ccCCcCEEEE
Confidence            3689999999999999999988  789999997554    44555566788999999888775 222   3678999987


Q ss_pred             ECCCCCCCC-cch--hhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          306 QCPNPDFNR-PEH--RWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       306 ~fpdpw~k~-~h~--krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +++  +... .+.  ........+++++.++|||||.+++..
T Consensus        96 ~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  135 (185)
T 3mti_A           96 NLG--YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI  135 (185)
T ss_dssp             EEC-------------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eCC--CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence            742  2111 000  001112478899999999999998864

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.38  E-value=7.8e-12  Score=117.30  Aligned_cols=125  Identities=14%  Similarity=0.095  Sum_probs=95.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+.+|||+|||+|.++..+|+. -|+-+++|+|++..+++.+.+.  ...|+..+.+|+... ... +...+++|.|+..
T Consensus        77 pG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p-~~~-~~~~~~vDvVf~d  154 (233)
T 4df3_A           77 EGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFP-EKY-RHLVEGVDGLYAD  154 (233)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCG-GGG-TTTCCCEEEEEEC
T ss_pred             CCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCc-ccc-ccccceEEEEEEe
Confidence            4799999999999999999997 4889999999887777665432  457999999999875 222 2356889999877


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe---------CcHHHHHHHHHHHHhCCCCcee
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t---------D~~~~~~~~~~~~~~~~~~~~~  366 (416)
                      ++.||.          ...++.++++.|||||++++..         +....+....+.+++.||....
T Consensus       155 ~~~~~~----------~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e  213 (233)
T 4df3_A          155 VAQPEQ----------AAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKD  213 (233)
T ss_dssp             CCCTTH----------HHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEE
T ss_pred             ccCChh----------HHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence            665541          1378999999999999998852         2233455667788888987544

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.38  E-value=1.7e-12  Score=122.49  Aligned_cols=99  Identities=18%  Similarity=0.294  Sum_probs=79.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+++..+  +++|+|++..+    .+++...+++|+.|+++|+.++     |+++++||.|++
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l-----~~~~~~fD~V~~  109 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-----PFTDERFHIVTC  109 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-----CSCTTCEEEEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC-----CCCCCCEEEEEE
Confidence            468999999999999999999875  99999975544    4444556778999999999876     446789999999


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ++.-.|..+.        +.+|++++++|||||.|++.
T Consensus       110 ~~~l~~~~d~--------~~~l~~~~r~LkpgG~l~~~  139 (260)
T 1vl5_A          110 RIAAHHFPNP--------ASFVSEAYRVLKKGGQLLLV  139 (260)
T ss_dssp             ESCGGGCSCH--------HHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhHhcCCH--------HHHHHHHHHHcCCCCEEEEE
Confidence            8665554321        48999999999999999985

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.38  E-value=3.3e-12  Score=121.03  Aligned_cols=122  Identities=16%  Similarity=0.180  Sum_probs=91.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|..++.+|..+|+.+++|+|++..    |.++++..+++|++++++|+.++...  +..+++||.|++
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~--~~~~~~fD~I~s  157 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLARE--AGHREAYARAVA  157 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTS--TTTTTCEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcc--cccCCCceEEEE
Confidence            367999999999999999999999999999997554    44555667888999999999887211  012478999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC--cHHHHHHHHHHHHhCCCCce
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--IEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD--~~~~~~~~~~~~~~~~~~~~  365 (416)
                      ....++            +.+++.+.++|||||++++..-  ..+-.....+.++..++...
T Consensus       158 ~a~~~~------------~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~  207 (249)
T 3g89_A          158 RAVAPL------------CVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLG  207 (249)
T ss_dssp             ESSCCH------------HHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEE
T ss_pred             CCcCCH------------HHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEE
Confidence            743221            4889999999999999887542  23334445566777777543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.38  E-value=4.1e-12  Score=117.54  Aligned_cols=128  Identities=18%  Similarity=0.228  Sum_probs=92.0

Q ss_pred             CCCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+||| +|.++..+|+.. ..+++|+|++..+    .++++.+++ |++++++|+..+ .   ++.+++||.|+
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~-~---~~~~~~fD~I~  128 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGII-K---GVVEGTFDVIF  128 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSS-T---TTCCSCEEEEE
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhh-h---hcccCceeEEE
Confidence            36899999999 999999999986 7899999975544    444555677 899999997654 2   22468999999


Q ss_pred             EECCCCCCCCcchh-------------hhhhhHHHHHHHHhhccCCcEEEEEeCc-HHHHHHHHHHHHhCCCCce
Q 014919          305 IQCPNPDFNRPEHR-------------WRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       305 ~~fpdpw~k~~h~k-------------rRl~~~~~l~~i~r~LkpgG~l~l~tD~-~~~~~~~~~~~~~~~~~~~  365 (416)
                      ++.  |++......             .......+++++.++|||||.+++.+.. ....+.+.+.+++.++...
T Consensus       129 ~np--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~  201 (230)
T 3evz_A          129 SAP--PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVK  201 (230)
T ss_dssp             ECC--CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEE
T ss_pred             ECC--CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceE
Confidence            873  332211100             0011258999999999999999987543 3556778888899887543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.37  E-value=2.4e-12  Score=119.84  Aligned_cols=121  Identities=11%  Similarity=0.088  Sum_probs=88.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+|||+|.++..+|+.. |..+++|+|++..    +++.++.+  .|++++++|+.+...  ++..+++||.|+
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~--~~~~~~~~D~V~  152 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHK--YRMLIAMVDVIF  152 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGG--GGGGCCCEEEEE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhh--hcccCCcEEEEE
Confidence            36799999999999999999986 7789999998754    44444443  789999999987411  122467899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH----------HHHHHHHHHHhCCCCce
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE----------VMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~----------~~~~~~~~~~~~~~~~~  365 (416)
                      ++.+.|+     .     ...++.++.++|||||.+++.+....          +.++ ++.+++.||...
T Consensus       153 ~~~~~~~-----~-----~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~  212 (233)
T 2ipx_A          153 ADVAQPD-----Q-----TRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQ  212 (233)
T ss_dssp             ECCCCTT-----H-----HHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEE
T ss_pred             EcCCCcc-----H-----HHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceE
Confidence            9766443     1     13568889999999999999654321          3333 466677776543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.37  E-value=1.5e-12  Score=123.68  Aligned_cols=102  Identities=10%  Similarity=-0.009  Sum_probs=78.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH-hC--------------------CCcEEEEEcChhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL-SG--------------------ITNGYFIATNATST  288 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~-~~--------------------l~nv~f~~~Da~~l  288 (416)
                      .+.+|||+|||+|..+..||++  +.+|+|||+++.+++.+++ .+                    ..|++|+++|+.++
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            3679999999999999999987  6799999998888887753 22                    25899999999887


Q ss_pred             hhhhhccC-CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          289 FRSIVASY-PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       289 ~~~~~~~~-~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                           +.. .++||.|+....-.+....      ....++++++++|||||++++.|
T Consensus       146 -----~~~~~~~FD~V~~~~~l~~l~~~------~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          146 -----PRANIGKFDRIWDRGALVAINPG------DHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             -----GGGCCCCEEEEEESSSTTTSCGG------GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -----CcccCCCEEEEEEhhhhhhCCHH------HHHHHHHHHHHHcCCCeEEEEEE
Confidence                 212 3799999976443332111      12478999999999999997654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.37  E-value=6.1e-12  Score=120.40  Aligned_cols=131  Identities=18%  Similarity=0.238  Sum_probs=95.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|||+|.++..+++.+|..+++|+|++..++    ++++..+++|++|+++|+.+.    +  ++++||.|++
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~----~--~~~~fD~Iv~  182 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA----L--AGQQFAMIVS  182 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG----G--TTCCEEEEEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh----c--ccCCccEEEE
Confidence            35799999999999999999999999999999765544    444556788999999998764    2  3578999999


Q ss_pred             ECCCCCCCCcchh---------hh--------hhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919          306 QCPNPDFNRPEHR---------WR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  367 (416)
Q Consensus       306 ~fpdpw~k~~h~k---------rR--------l~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~  367 (416)
                      +.|..+....|-.         ..        -....+++.+.+.|+|||.+++..... ..+.+.+.+++.||.....
T Consensus       183 npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~l~~~Gf~~v~~  260 (276)
T 2b3t_A          183 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ-QGEAVRQAFILAGYHDVET  260 (276)
T ss_dssp             CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS-CHHHHHHHHHHTTCTTCCE
T ss_pred             CCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch-HHHHHHHHHHHCCCcEEEE
Confidence            8544332211100         00        123578999999999999999976543 3455777888888764433

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.37  E-value=6.1e-12  Score=116.04  Aligned_cols=101  Identities=13%  Similarity=0.078  Sum_probs=76.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+|+..+..+++|+|++..++    +.++.  ..|+.++++|+... ....+ ..++||.|++
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~--~~~v~~~~~d~~~~-~~~~~-~~~~fD~V~~  132 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--RNNIIPLLFDASKP-WKYSG-IVEKVDLIYQ  132 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--CSSEEEECSCTTCG-GGTTT-TCCCEEEEEE
T ss_pred             CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc--CCCeEEEEcCCCCc-hhhcc-cccceeEEEE
Confidence            46799999999999999999998777999999877543    33332  46899999998764 21112 2478999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +.++|+          ....++++++++|||||+|++..
T Consensus       133 ~~~~~~----------~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          133 DIAQKN----------QIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             CCCSTT----------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eccChh----------HHHHHHHHHHHHhCCCCEEEEEE
Confidence            754432          01256899999999999999973

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.37  E-value=1.3e-12  Score=122.64  Aligned_cols=100  Identities=13%  Similarity=0.024  Sum_probs=84.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+.+|||||||+|.++..+++.+|..+++|+|++..+++.+++. ..|++++++|+.++     + ++++||.|+++..-
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~d~~~~-----~-~~~~fD~v~~~~~l  105 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-LPNTNFGKADLATW-----K-PAQKADLLYANAVF  105 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-STTSEEEECCTTTC-----C-CSSCEEEEEEESCG
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-CCCcEEEECChhhc-----C-ccCCcCEEEEeCch
Confidence            46789999999999999999999999999999988887777655 57899999999876     3 46889999998765


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .|..+        ...++++++++|||||.+++.+
T Consensus       106 ~~~~~--------~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          106 QWVPD--------HLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             GGSTT--------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             hhCCC--------HHHHHHHHHHhcCCCeEEEEEe
Confidence            55422        1488999999999999999975

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.36  E-value=3.6e-12  Score=115.15  Aligned_cols=111  Identities=14%  Similarity=0.097  Sum_probs=80.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHH----HHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTH----CRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~----a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||+|||+|.++..++++. |..+++|+|++..    |.++++..++ +|++++++|+.++ ...   .+++||.|
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~---~~~~fD~v   97 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNM-DKY---IDCPVKAV   97 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGG-GGT---CCSCEEEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH-hhh---ccCCceEE
Confidence            36799999999999999999985 6789999997554    4445555676 6899999999887 222   36889999


Q ss_pred             EEECCC-CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          304 SIQCPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       304 ~~~fpd-pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +++.|. |...............+++++.++|||||.+++.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            988543 21111111111122479999999999999999874

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.36  E-value=2.7e-12  Score=122.16  Aligned_cols=102  Identities=16%  Similarity=0.252  Sum_probs=83.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+++.+|..+++|+|++..    |.+++...+++|++++++|+.++     ++++++||.|++
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~  111 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL-----PFEDSSFDHIFV  111 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGC-----CSCTTCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccC-----CCCCCCeeEEEE
Confidence            468999999999999999999999999999997544    44445556788999999999876     335789999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +....+..+.        ..+++++.++|||||.+++..
T Consensus       112 ~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          112 CFVLEHLQSP--------EEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             ESCGGGCSCH--------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             echhhhcCCH--------HHHHHHHHHHcCCCcEEEEEE
Confidence            8654443221        388999999999999999863

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.36  E-value=2.4e-12  Score=119.50  Aligned_cols=100  Identities=15%  Similarity=0.187  Sum_probs=80.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      +.+|||||||+|.++..+++..+  +++|+|++..+++.+++.-..|+.++++|+.++    +  ++++||.|++...-.
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~----~--~~~~fD~v~~~~~l~  114 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDA----Q--LPRRYDNIVLTHVLE  114 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC----C--CSSCEEEEEEESCGG
T ss_pred             CCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc----C--cCCcccEEEEhhHHH
Confidence            56899999999999999999865  799999988887777654333899999999876    1  478999999875433


Q ss_pred             CCCCcchhhhhhhHHHHHHHH-hhccCCcEEEEEeCc
Q 014919          311 DFNRPEHRWRMVQRSLVEAVS-DLLVHDGKVFLQSDI  346 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~-r~LkpgG~l~l~tD~  346 (416)
                      +..+.        ..+|++++ ++|||||.+++.+.+
T Consensus       115 ~~~~~--------~~~l~~~~~~~LkpgG~l~i~~~~  143 (250)
T 2p7i_A          115 HIDDP--------VALLKRINDDWLAEGGRLFLVCPN  143 (250)
T ss_dssp             GCSSH--------HHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             hhcCH--------HHHHHHHHHHhcCCCCEEEEEcCC
Confidence            32211        48999999 999999999997643

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.35  E-value=2.4e-12  Score=117.15  Aligned_cols=118  Identities=17%  Similarity=0.216  Sum_probs=91.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+++. +..+++|+|++..+    .+++...++.|++++++|+.+.       .+++||.|++
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-------~~~~fD~i~~  131 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD-------VDGKFDLIVA  131 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT-------CCSCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc-------CCCCceEEEE
Confidence            3689999999999999998874 67799999975544    4445556787899999998764       3678999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~  366 (416)
                      +.+..      +     ...+++++.++|+|||.+++.+-.....+.+.+.+++.++....
T Consensus       132 ~~~~~------~-----~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~  181 (205)
T 3grz_A          132 NILAE------I-----LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDL  181 (205)
T ss_dssp             ESCHH------H-----HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEE
T ss_pred             CCcHH------H-----HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEE
Confidence            84321      1     24889999999999999999755555567788888998876543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.35  E-value=3.2e-12  Score=120.22  Aligned_cols=103  Identities=15%  Similarity=0.129  Sum_probs=82.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCC--CcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGI--TNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l--~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+.+|||||||+|.++..+++++ ..+++|+|++..+++.+++...  .|++++++|+.++     ++++++||.|+++.
T Consensus        55 ~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~~  128 (266)
T 3ujc_A           55 ENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTK-----EFPENNFDLIYSRD  128 (266)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTC-----CCCTTCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccC-----CCCCCcEEEEeHHH
Confidence            46799999999999999999987 6799999998888777765432  6899999999876     44578999999885


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .-.+....      ....++++++++|||||.+++.+
T Consensus       129 ~l~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          129 AILALSLE------NKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             CGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhcChH------HHHHHHHHHHHHcCCCCEEEEEE
Confidence            43332111      12489999999999999999864

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.34  E-value=6.2e-12  Score=118.07  Aligned_cols=100  Identities=16%  Similarity=0.122  Sum_probs=80.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+++..|. +++|+|++..    |.+++...++.+ ++++++|+.++     ++++++||.|+
T Consensus        46 ~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~  119 (257)
T 3f4k_A           46 DDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-----PFQNEELDLIW  119 (257)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----SSCTTCEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-----CCCCCCEEEEE
Confidence            3579999999999999999999875 9999997554    444555667765 99999999776     44578999999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ++..-.+. .        .+.+++++.++|||||.+++.+
T Consensus       120 ~~~~l~~~-~--------~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          120 SEGAIYNI-G--------FERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             EESCSCCC-C--------HHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ecChHhhc-C--------HHHHHHHHHHHcCCCcEEEEEE
Confidence            98654443 1        1489999999999999999975

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.34  E-value=8.4e-12  Score=118.30  Aligned_cols=128  Identities=16%  Similarity=0.259  Sum_probs=91.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      +.+|||+|||+|.+++.+|++.+. +++|+|++..    |.+++..+++. |++++++|+.++. ..+  .+++||.|++
T Consensus        50 ~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~-~~~--~~~~fD~Ii~  125 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT-DLI--PKERADIVTC  125 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGG-GTS--CTTCEEEEEE
T ss_pred             CCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhh-hhh--ccCCccEEEE
Confidence            679999999999999999998765 9999997544    44455556776 6999999999873 222  4689999999


Q ss_pred             ECCCCCCCC-cch-------------hhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          306 QCPNPDFNR-PEH-------------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       306 ~fpdpw~k~-~h~-------------krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      |  .|++.. .+.             ..+.....+++.+.++|||||.+++...... ...+.+.+.++++...
T Consensus       126 n--pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~l~~~~~~~~  196 (259)
T 3lpm_A          126 N--PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER-LLDIIDIMRKYRLEPK  196 (259)
T ss_dssp             C--CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTT-HHHHHHHHHHTTEEEE
T ss_pred             C--CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH-HHHHHHHHHHCCCceE
Confidence            7  344322 000             0011235799999999999999999876554 4446777888776543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.34  E-value=2.4e-12  Score=120.33  Aligned_cols=99  Identities=23%  Similarity=0.338  Sum_probs=79.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+++..+  +++|+|++..    +.+++...+++|++++++|+..+     ++++++||.|++
T Consensus        21 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v~~   93 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-----PFPDDSFDIITC   93 (239)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-----CSCTTCEEEEEE
T ss_pred             CCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC-----CCCCCcEEEEEE
Confidence            468999999999999999999864  8999997544    44445556788999999999876     445789999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .+.-.|..+        ...++++++++|||||.+++.
T Consensus        94 ~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~  123 (239)
T 1xxl_A           94 RYAAHHFSD--------VRKAVREVARVLKQDGRFLLV  123 (239)
T ss_dssp             ESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCchhhccC--------HHHHHHHHHHHcCCCcEEEEE
Confidence            854433221        148899999999999999985

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.34  E-value=5.6e-12  Score=115.61  Aligned_cols=119  Identities=12%  Similarity=0.047  Sum_probs=88.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+.+|||||||+|.++..++++  ..+++|+|++..+++.+++.-..|++++++|+.++     +.. ++||.|+++..-
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~-----~~~-~~fD~v~~~~~l  116 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSF-----EVP-TSIDTIVSTYAF  116 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSC-----CCC-SCCSEEEEESCG
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhc-----CCC-CCeEEEEECcch
Confidence            3679999999999999999987  67999999988877776654335899999999886     324 899999998544


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe---CcHHHHHHHHHHHHhCCC
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---DIEEVMLRMKQQFLEYGK  362 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t---D~~~~~~~~~~~~~~~~~  362 (416)
                      .+....      ....+|+++.++|||||.+++.+   +...........+...++
T Consensus       117 ~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~  166 (220)
T 3hnr_A          117 HHLTDD------EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGF  166 (220)
T ss_dssp             GGSCHH------HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTC
T ss_pred             hcCChH------HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCC
Confidence            432211      11358999999999999999973   334444444455555544

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.34  E-value=3.4e-12  Score=123.25  Aligned_cols=99  Identities=19%  Similarity=0.215  Sum_probs=80.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHH----h--CCCcEEEEEcChhhhhhhhhccCC-----
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQL----S--GITNGYFIATNATSTFRSIVASYP-----  297 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~----~--~l~nv~f~~~Da~~l~~~~~~~~~-----  297 (416)
                      .+.+|||||||+|.++..+++.+ +..+++|+|++..+++.+++    .  ...|++|+++|+.++     ++.+     
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~~~~  110 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDF-----KFLGADSVD  110 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCC-----GGGCTTTTT
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhC-----Ccccccccc
Confidence            47899999999999999999986 89999999986655554433    2  357899999999886     2234     


Q ss_pred             -CceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          298 -GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       298 -~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                       ++||.|+++..-.|. .        ...+++++.++|||||.|++
T Consensus       111 ~~~fD~V~~~~~l~~~-~--------~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          111 KQKIDMITAVECAHWF-D--------FEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             SSCEEEEEEESCGGGS-C--------HHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCeeEEeHhhHHHHh-C--------HHHHHHHHHHhcCCCcEEEE
Confidence             799999998765554 1        24899999999999999988

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.33  E-value=3.4e-12  Score=117.19  Aligned_cols=108  Identities=10%  Similarity=0.013  Sum_probs=80.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCC-----cEEEEEcChhhhhhhhhccCCCce
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT-----NGYFIATNATSTFRSIVASYPGKL  300 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~-----nv~f~~~Da~~l~~~~~~~~~~s~  300 (416)
                      .+.+|||||||+|.++..++++.|..+++|+|++..+++.++    ..++.     |++++++|+...     +..+++|
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~f  103 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ-----DKRFHGY  103 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC-----CGGGCSC
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc-----cccCCCc
Confidence            367999999999999999999988899999998666555443    33444     799999998654     2235789


Q ss_pred             eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919          301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  349 (416)
Q Consensus       301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~  349 (416)
                      |.|+++..-.+....      ....+++++.++|||||.+++ +++..+
T Consensus       104 D~v~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~li~-~~~~~~  145 (217)
T 3jwh_A          104 DAATVIEVIEHLDLS------RLGAFERVLFEFAQPKIVIVT-TPNIEY  145 (217)
T ss_dssp             SEEEEESCGGGCCHH------HHHHHHHHHHTTTCCSEEEEE-EEBHHH
T ss_pred             CEEeeHHHHHcCCHH------HHHHHHHHHHHHcCCCEEEEE-ccCccc
Confidence            999988543332111      114889999999999996555 555443

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.33  E-value=1.1e-11  Score=118.60  Aligned_cols=102  Identities=21%  Similarity=0.231  Sum_probs=79.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      +.+|||||||+|.++..+++.  ..+++|+|++..+++.    +...++ +|++++++|+.++.    ++.+++||.|++
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~v~~  142 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVA----SHLETPVDLILF  142 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTG----GGCSSCEEEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhh----hhcCCCceEEEE
Confidence            579999999999999999988  6799999976555444    444566 68999999998872    125789999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      +..-.|..+.        ..+++++.++|||||.+++.+.+
T Consensus       143 ~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~~~~~~  175 (285)
T 4htf_A          143 HAVLEWVADP--------RSVLQTLWSVLRPGGVLSLMFYN  175 (285)
T ss_dssp             ESCGGGCSCH--------HHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             CchhhcccCH--------HHHHHHHHHHcCCCeEEEEEEeC
Confidence            8654443221        48999999999999999997643

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.33  E-value=3.8e-12  Score=127.80  Aligned_cols=128  Identities=13%  Similarity=0.163  Sum_probs=94.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHHh---------C-C--CcEEEEEcChhhhhhh-hhcc
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLS---------G-I--TNGYFIATNATSTFRS-IVAS  295 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~~---------~-l--~nv~f~~~Da~~l~~~-~~~~  295 (416)
                      .+.+|||||||+|.++..+++.+ |..+++|+|++..+++.++++         | +  .|++|+++|+.++... ..++
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            36899999999999999999986 788999999876666555432         3 2  6899999999876211 0023


Q ss_pred             CCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH----------------------HHHHHH
Q 014919          296 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----------------------EVMLRM  353 (416)
Q Consensus       296 ~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~----------------------~~~~~~  353 (416)
                      ++++||.|++++.-.|..+.        ..+|++++++|||||.|++.+-..                      ...+.+
T Consensus       163 ~~~~fD~V~~~~~l~~~~d~--------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (383)
T 4fsd_A          163 PDSSVDIVISNCVCNLSTNK--------LALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDF  234 (383)
T ss_dssp             CTTCEEEEEEESCGGGCSCH--------HHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHH
T ss_pred             CCCCEEEEEEccchhcCCCH--------HHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHH
Confidence            57899999998755543221        489999999999999999863110                      112566


Q ss_pred             HHHHHhCCCCce
Q 014919          354 KQQFLEYGKGKL  365 (416)
Q Consensus       354 ~~~~~~~~~~~~  365 (416)
                      .+.+++.||...
T Consensus       235 ~~ll~~aGF~~v  246 (383)
T 4fsd_A          235 RRLVAEAGFRDV  246 (383)
T ss_dssp             HHHHHHTTCCCE
T ss_pred             HHHHHHCCCceE
Confidence            778888888644

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.33  E-value=4.6e-12  Score=122.46  Aligned_cols=113  Identities=16%  Similarity=0.112  Sum_probs=82.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh----CC-------------------------------
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GI-------------------------------  275 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~----~l-------------------------------  275 (416)
                      +.+|||||||+|.++..+|+++|..+++|+|++..+++.++++    +.                               
T Consensus        47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (292)
T 3g07_A           47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF  126 (292)
T ss_dssp             TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred             CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence            6899999999999999999999999999999876666555432    10                               


Q ss_pred             ---------------------------CcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHH
Q 014919          276 ---------------------------TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVE  328 (416)
Q Consensus       276 ---------------------------~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~  328 (416)
                                                 .|++|+++|+........++.+++||.|+++....|..-.+..  -....+++
T Consensus       127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~--~~~~~~l~  204 (292)
T 3g07_A          127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGD--EGLKRMFR  204 (292)
T ss_dssp             ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHH--HHHHHHHH
T ss_pred             cchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCH--HHHHHHHH
Confidence                                       4899999999754222223357899999988544332100000  01247899


Q ss_pred             HHHhhccCCcEEEEEeC
Q 014919          329 AVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       329 ~i~r~LkpgG~l~l~tD  345 (416)
                      +++++|+|||.|++.+.
T Consensus       205 ~~~~~LkpGG~lil~~~  221 (292)
T 3g07_A          205 RIYRHLRPGGILVLEPQ  221 (292)
T ss_dssp             HHHHHEEEEEEEEEECC
T ss_pred             HHHHHhCCCcEEEEecC
Confidence            99999999999999753

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.33  E-value=1.4e-11  Score=120.01  Aligned_cols=128  Identities=16%  Similarity=0.131  Sum_probs=93.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--------CCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--------~l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      ++.+|||||||+|.++..+++..|..+++++|++..+++.+++.        ..+|++++.+|+.+++..   ..+++||
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~---~~~~~fD  171 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ---TPDNTYD  171 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS---SCTTCEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh---ccCCcee
Confidence            46799999999999999999887788999999866555544332        236799999999887321   1367899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH----HHHHHHHHHHHhCCCCc
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~----~~~~~~~~~~~~~~~~~  364 (416)
                      .|+++.++|+...    .++...+++++++++|||||.+++.+...    .....+.+.+++.||..
T Consensus       172 vIi~d~~~~~~~~----~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~  234 (304)
T 3bwc_A          172 VVIIDTTDPAGPA----SKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFAS  234 (304)
T ss_dssp             EEEEECC-------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSE
T ss_pred             EEEECCCCccccc----hhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCc
Confidence            9999988876321    22444689999999999999999986542    34566777888887753

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.33  E-value=5.3e-12  Score=117.83  Aligned_cols=121  Identities=14%  Similarity=0.072  Sum_probs=90.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      +.+|||||||+|.++..+++.  +.+++|+|++..+++.+++.    +.++++|+.+.+.   ++++++||.|++...-.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~----~~~~~~d~~~~~~---~~~~~~fD~i~~~~~l~  112 (240)
T 3dli_A           42 CRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK----FNVVKSDAIEYLK---SLPDKYLDGVMISHFVE  112 (240)
T ss_dssp             CSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT----SEEECSCHHHHHH---TSCTTCBSEEEEESCGG
T ss_pred             CCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh----cceeeccHHHHhh---hcCCCCeeEEEECCchh
Confidence            688999999999999999998  56899999988888877644    8999999988632   33578999999875443


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH------------------HHHHHHHHHhCCCCcee
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV------------------MLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~------------------~~~~~~~~~~~~~~~~~  366 (416)
                      |.....      ...++++++++|||||.+++.+.+...                  .+.+.+.+++.|+....
T Consensus       113 ~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~  180 (240)
T 3dli_A          113 HLDPER------LFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVK  180 (240)
T ss_dssp             GSCGGG------HHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred             hCCcHH------HHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEE
Confidence            332111      148999999999999999997643221                  13456677777876443

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.32  E-value=1.1e-11  Score=122.99  Aligned_cols=118  Identities=16%  Similarity=0.101  Sum_probs=88.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..+||+|||+|.+++.+|... |+.+++|+|++.    .|.++++..++++++|+++|+.++     +.+..++|.|+
T Consensus       203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~-----~~~~~~~D~Ii  277 (354)
T 3tma_A          203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHL-----PRFFPEVDRIL  277 (354)
T ss_dssp             TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGG-----GGTCCCCSEEE
T ss_pred             CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhC-----ccccCCCCEEE
Confidence            35789999999999999999987 889999999754    455556667888999999999987     22356789999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHH
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLR  352 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~  352 (416)
                      +|.|..+....+....-.+..+++++.++|+|||.+++.|.+..+++.
T Consensus       278 ~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~~  325 (354)
T 3tma_A          278 ANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKR  325 (354)
T ss_dssp             ECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHHHH
T ss_pred             ECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Confidence            984432211111111223468999999999999999999988766443

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.32  E-value=1.1e-11  Score=115.37  Aligned_cols=123  Identities=12%  Similarity=0.089  Sum_probs=87.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+.+|||||||+|.++..+|+..|..+++|+|++..+++.++++  ..+|+.++++|+... ..++++. ++||.|+..+
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~-~~~~~~~-~~~D~v~~~~  151 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKP-QEYANIV-EKVDVIYEDV  151 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCG-GGGTTTS-CCEEEEEECC
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCc-ccccccC-ccEEEEEEec
Confidence            36799999999999999999998888999999887766655432  237899999999873 1112323 7899998554


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC-----c----HHHH-HHHHHHHHhCCCCce
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-----I----EEVM-LRMKQQFLEYGKGKL  365 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD-----~----~~~~-~~~~~~~~~~~~~~~  365 (416)
                      ++|-          ....+++++.++|||||.+++...     .    ..++ +++. .+.+.++...
T Consensus       152 ~~~~----------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~  208 (230)
T 1fbn_A          152 AQPN----------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIV  208 (230)
T ss_dssp             CSTT----------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEE
T ss_pred             CChh----------HHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEE
Confidence            4331          124789999999999999998521     1    1223 3344 7777777543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.32  E-value=6.5e-13  Score=130.11  Aligned_cols=209  Identities=16%  Similarity=0.167  Sum_probs=120.5

Q ss_pred             ChhhHHHHHHHhccCCeEE--Eec---cceEEEeCCCCchHHHHHHHHHhhhcCCCCeEEEcchhHH---HHhcccCC-c
Q 014919          115 GPRSVEEITSTITKCKKVI--WVG---PVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACK---AIAKVSSS-I  185 (416)
Q Consensus       115 Gp~T~~~~~~~~~~a~~i~--wnG---p~G~~e~~~f~~GT~~l~~~~a~~~~~~~~~~v~gg~~~~---~~~~~~~~-~  185 (416)
                      ||.|++++++.++..++.+  |..   .+|+++.+   .|+|.+.+.-+.........++.+.....   ........ .
T Consensus        38 ~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~---~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  114 (335)
T 2r3s_A           38 GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ---AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLT  114 (335)
T ss_dssp             SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHH
T ss_pred             CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec---CCEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHH
Confidence            8999999999999876653  444   45888753   46665543321211111122222221111   11111122 3


Q ss_pred             cceeeecCCceE--eeeecccCCCCc-ccccccC-c----cccccccccCC--CCCCeEEEEeccccHHHHHHHHhCCCC
Q 014919          186 FGLNMVESGSAV--WEFLKGRMLPGV-SALDRAF-P----FDIDWSAAYHD--PAQPLVVDIGSGNGLFLLGMARKRKDL  255 (416)
Q Consensus       186 ~~~st~~GGGa~--le~l~gr~lPg~-~aL~~~~-p----~~~~~~~~f~~--~~~~~vLDIGCG~G~~~~~lA~~~p~~  255 (416)
                      +.+++  |...+  |+.+..  .|.. ..+...+ +    ....+.+.++.  ....+|||||||+|.++..+++++|+.
T Consensus       115 ~~l~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~  190 (335)
T 2r3s_A          115 AAVLK--GGTAISSEGTLSP--EHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNA  190 (335)
T ss_dssp             HHHHH--TSCCSTTTGGGST--TCTHHHHHHHHSGGGGHHHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTC
T ss_pred             HHHhc--CCCCCCCcccccC--CHHHHHHHHHHHHHHHhhhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCC
Confidence            56666  33333  222211  1111 1111110 0    00011222221  246899999999999999999999999


Q ss_pred             eEEEEchHHHHHHH----HHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHH
Q 014919          256 NFLGLELVTHCRDS----LQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV  330 (416)
Q Consensus       256 ~~iGvD~~~~a~~~----a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i  330 (416)
                      +++|+|++ .+++.    +...++. +++|+++|+.+.     +. +..+|.|++..+-.+....      ....+++++
T Consensus       191 ~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~-~~~~D~v~~~~~l~~~~~~------~~~~~l~~~  257 (335)
T 2r3s_A          191 EIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV-----DY-GNDYDLVLLPNFLHHFDVA------TCEQLLRKI  257 (335)
T ss_dssp             EEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS-----CC-CSCEEEEEEESCGGGSCHH------HHHHHHHHH
T ss_pred             eEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC-----CC-CCCCcEEEEcchhccCCHH------HHHHHHHHH
Confidence            99999986 55444    3445665 699999998764     21 3349999987432211111      124889999


Q ss_pred             HhhccCCcEEEEE
Q 014919          331 SDLLVHDGKVFLQ  343 (416)
Q Consensus       331 ~r~LkpgG~l~l~  343 (416)
                      +++|+|||++++.
T Consensus       258 ~~~L~pgG~l~i~  270 (335)
T 2r3s_A          258 KTALAVEGKVIVF  270 (335)
T ss_dssp             HHHEEEEEEEEEE
T ss_pred             HHhCCCCcEEEEE
Confidence            9999999998885

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.32  E-value=7.4e-12  Score=117.48  Aligned_cols=121  Identities=17%  Similarity=0.225  Sum_probs=89.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+|+.. +.+++|+|++..+    .++++..++. |+.|+++|+.++     ++ +++||.|+
T Consensus        36 ~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~-~~~fD~V~  108 (256)
T 1nkv_A           36 PGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-----VA-NEKCDVAA  108 (256)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-----CC-SSCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC-----Cc-CCCCCEEE
Confidence            46799999999999999999987 6799999975544    4444556764 899999999876     32 68899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc-------HHH--------------HHHHHHHHHhCCCC
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-------EEV--------------MLRMKQQFLEYGKG  363 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~-------~~~--------------~~~~~~~~~~~~~~  363 (416)
                      +...-.+...        ...+|++++++|||||.+++....       ..+              ...+.+.+++.|+.
T Consensus       109 ~~~~~~~~~~--------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  180 (256)
T 1nkv_A          109 CVGATWIAGG--------FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYD  180 (256)
T ss_dssp             EESCGGGTSS--------SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBC
T ss_pred             ECCChHhcCC--------HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCe
Confidence            8643322211        148899999999999999986311       111              14566778888876


Q ss_pred             ce
Q 014919          364 KL  365 (416)
Q Consensus       364 ~~  365 (416)
                      ..
T Consensus       181 ~~  182 (256)
T 1nkv_A          181 VV  182 (256)
T ss_dssp             CC
T ss_pred             eE
Confidence            54

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.31  E-value=1.2e-11  Score=110.35  Aligned_cols=116  Identities=12%  Similarity=0.220  Sum_probs=88.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCc--EEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~n--v~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||+|||+|.++..+++.  ..+++|+|++..+    .+++...+++|  ++++++|+.+.+      .++++|.|
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~v  123 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV------KDRKYNKI  123 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC------TTSCEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc------ccCCceEE
Confidence            4679999999999999999988  7799999975544    44444567787  999999987641      36789999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhC
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  360 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~  360 (416)
                      +++.|..|  .   .  -....+++++.++|+|||.+++.+........+.+.+++.
T Consensus       124 ~~~~~~~~--~---~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~  173 (194)
T 1dus_A          124 ITNPPIRA--G---K--EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV  173 (194)
T ss_dssp             EECCCSTT--C---H--HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH
T ss_pred             EECCCccc--c---h--hHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH
Confidence            98743222  1   1  1124889999999999999999887766666677777665

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.31  E-value=1.1e-11  Score=111.62  Aligned_cols=106  Identities=11%  Similarity=0.081  Sum_probs=79.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|||+|.++..+++. +..+++|+|++..    |.++++..+++|++++++|+.+++.. +  ++++||.|++
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~--~~~~fD~i~~  119 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA-G--TTSPVDLVLA  119 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH-C--CSSCCSEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh-c--cCCCccEEEE
Confidence            4689999999999999988875 5668999997544    45555566788999999999987432 2  3689999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHh--hccCCcEEEEEeCc
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSDI  346 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r--~LkpgG~l~l~tD~  346 (416)
                      +.|  ++....     ....+++.+.+  +|+|||.+++.+..
T Consensus       120 ~~p--~~~~~~-----~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          120 DPP--YNVDSA-----DVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             CCC--TTSCHH-----HHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             CCC--CCcchh-----hHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            743  321100     12478899998  99999999997643

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.31  E-value=9.7e-13  Score=119.51  Aligned_cols=131  Identities=12%  Similarity=0.090  Sum_probs=79.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|||+|.++..+++..|+.+++|+|++..+++.+    ...+. |++++++|+.+.++... ...++||.|++
T Consensus        30 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~-~~~~~fD~i~~  107 (215)
T 4dzr_A           30 SGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERA-ERGRPWHAIVS  107 (215)
T ss_dssp             TTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHH-HTTCCBSEEEE
T ss_pred             CCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhh-hccCcccEEEE
Confidence            46899999999999999999999999999999866555443    33444 79999999887432100 02389999999


Q ss_pred             ECCCCCCCCcchhh----------hh--------hhHHHHHHHHhhccCCcE-EEEEeCcHHHHHHHHHHHH--hCCCC
Q 014919          306 QCPNPDFNRPEHRW----------RM--------VQRSLVEAVSDLLVHDGK-VFLQSDIEEVMLRMKQQFL--EYGKG  363 (416)
Q Consensus       306 ~fpdpw~k~~h~kr----------Rl--------~~~~~l~~i~r~LkpgG~-l~l~tD~~~~~~~~~~~~~--~~~~~  363 (416)
                      +.|..+....++-.          .+        ....+++++.++|||||. +++.+... ..+.+.+.+.  +.++.
T Consensus       108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~l~~~~~gf~  185 (215)
T 4dzr_A          108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHN-QADEVARLFAPWRERGF  185 (215)
T ss_dssp             CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTS-CHHHHHHHTGGGGGGTE
T ss_pred             CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCc-cHHHHHHHHHHhhcCCc
Confidence            74322111111000          00        115889999999999999 77765433 3455666677  66664

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.31  E-value=1.9e-11  Score=113.47  Aligned_cols=103  Identities=17%  Similarity=0.144  Sum_probs=80.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+.+|||||||+|.++..+++.. ..+++|+|++..+++.+++... .++.++++|+.++     ++++++||.|++..+
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~~~  116 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKL-----HLPQDSFDLAYSSLA  116 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGC-----CCCTTCEEEEEEESC
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhc-----cCCCCCceEEEEecc
Confidence            46799999999999999999873 2399999998888877765432 4799999999876     335789999998854


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      -.+...        ...++++++++|+|||.+++.+.+
T Consensus       117 l~~~~~--------~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          117 LHYVED--------VARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             GGGCSC--------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ccccch--------HHHHHHHHHHhcCcCcEEEEEeCC
Confidence            333211        148899999999999999997643

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.31  E-value=7.2e-12  Score=118.78  Aligned_cols=121  Identities=15%  Similarity=0.116  Sum_probs=90.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+|+. +..+++|+|++..    |.++++..+++ |++++++|+.++     ++++++||.|+
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~i~  119 (267)
T 3kkz_A           46 EKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL-----PFRNEELDLIW  119 (267)
T ss_dssp             TTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----CCCTTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC-----CCCCCCEEEEE
Confidence            4689999999999999999998 8889999997554    44445556764 599999999876     33578999999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc-------HH---H----------HHHHHHHHHhCCCCc
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-------EE---V----------MLRMKQQFLEYGKGK  364 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~-------~~---~----------~~~~~~~~~~~~~~~  364 (416)
                      ++.+-.+. .        ...+++++.++|||||.+++.+-.       ..   +          ...+.+.+++.||..
T Consensus       120 ~~~~~~~~-~--------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  190 (267)
T 3kkz_A          120 SEGAIYNI-G--------FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLP  190 (267)
T ss_dssp             ESSCGGGT-C--------HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEE
T ss_pred             EcCCceec-C--------HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEE
Confidence            87543332 1        248999999999999999986421       11   1          234567788888764


Q ss_pred             e
Q 014919          365 L  365 (416)
Q Consensus       365 ~  365 (416)
                      .
T Consensus       191 v  191 (267)
T 3kkz_A          191 V  191 (267)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.31  E-value=5.7e-12  Score=114.96  Aligned_cols=102  Identities=13%  Similarity=0.028  Sum_probs=83.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      +.+|||||||+|.++..+++.  ..+++|+|++..+++.+++.+..|++++++|+.++    +  ++++||.|++++.-.
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~----~--~~~~~D~v~~~~~l~  118 (218)
T 3ou2_A           47 RGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW----T--PDRQWDAVFFAHWLA  118 (218)
T ss_dssp             CSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC----C--CSSCEEEEEEESCGG
T ss_pred             CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC----C--CCCceeEEEEechhh
Confidence            579999999999999999998  66999999998888888777778999999999775    2  478999999885433


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      +....      ....+++++.++|+|||.+++.+..
T Consensus       119 ~~~~~------~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          119 HVPDD------RFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             GSCHH------HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCCHH------HHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            32111      1148899999999999999997543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.31  E-value=5.2e-12  Score=117.95  Aligned_cols=125  Identities=10%  Similarity=0.072  Sum_probs=90.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh----CCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~----~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||||||+|.++..+++.. ..+++|+|++..+++.++++    +..++.++++|+.++     +..+++||.|++.
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~  153 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF-----TPEPDSYDVIWIQ  153 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC-----CCCSSCEEEEEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhc-----CCCCCCEEEEEEc
Confidence            6799999999999999999886 56999999877666655433    234699999998776     3346789999988


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH--------------HHHHHHHHHHHhCCCCceee
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE--------------EVMLRMKQQFLEYGKGKLVL  367 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~--------------~~~~~~~~~~~~~~~~~~~~  367 (416)
                      ....+....      ....+++++.++|||||.+++.+...              ...+.+.+.+++.||.....
T Consensus       154 ~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  222 (241)
T 2ex4_A          154 WVIGHLTDQ------HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE  222 (241)
T ss_dssp             SCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred             chhhhCCHH------HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence            543332111      11478999999999999999854211              02455677788888865433

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.31  E-value=7.4e-12  Score=123.28  Aligned_cols=115  Identities=15%  Similarity=0.130  Sum_probs=87.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHHH----HHHHhC-----------CCcEEEEEcChhhhhhhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRD----SLQLSG-----------ITNGYFIATNATSTFRSIV  293 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~~----~a~~~~-----------l~nv~f~~~Da~~l~~~~~  293 (416)
                      .+.+|||+|||+|.++..+|+. .|..+++|+|++..+++    ++...+           ..|++++++|+.+...   
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~---  181 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE---  181 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc---
Confidence            4679999999999999999998 57789999997554444    333221           3689999999987521   


Q ss_pred             ccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhC
Q 014919          294 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  360 (416)
Q Consensus       294 ~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~  360 (416)
                      ++++++||.|+++.++||             .+++++.++|+|||.+++.+..........+.+.++
T Consensus       182 ~~~~~~fD~V~~~~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~  235 (336)
T 2b25_A          182 DIKSLTFDAVALDMLNPH-------------VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTC  235 (336)
T ss_dssp             ------EEEEEECSSSTT-------------TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             ccCCCCeeEEEECCCCHH-------------HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Confidence            123568999999888876             478999999999999999887777777777777654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.31  E-value=1.4e-11  Score=114.55  Aligned_cols=98  Identities=16%  Similarity=0.177  Sum_probs=77.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHH----HHHHHHHHhCCC--cEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~----~a~~~a~~~~l~--nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .++|||||||+|..++.||+..| +.+++++|++.    .|++++++.++.  |++++++|+.+.++. +  .+++||.|
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~-~--~~~~fD~V  133 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSR-L--ANDSYQLV  133 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGG-S--CTTCEEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHH-h--cCCCcCeE
Confidence            45899999999999999999875 88999999744    455556666776  799999999887532 1  36899999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      ++.   ++.  .+      .+.+++++.++|||||.+++
T Consensus       134 ~~d---~~~--~~------~~~~l~~~~~~LkpGG~lv~  161 (221)
T 3dr5_A          134 FGQ---VSP--MD------LKALVDAAWPLLRRGGALVL  161 (221)
T ss_dssp             EEC---CCT--TT------HHHHHHHHHHHEEEEEEEEE
T ss_pred             EEc---CcH--HH------HHHHHHHHHHHcCCCcEEEE
Confidence            874   331  11      24789999999999999998

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.31  E-value=1.4e-11  Score=114.97  Aligned_cols=99  Identities=18%  Similarity=0.233  Sum_probs=78.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+|+..|..+++|+|++.    .|.++++..++. |++++++|+.+.++.   ..+++||.|+
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~~fD~V~  147 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN---VNDKVYDMIF  147 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH---HTTSCEEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh---hccCCccEEE
Confidence            36899999999999999999988899999999754    445555566775 899999999876430   1267899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      +..+.+           ..+.+++.+.+.|||||.|++
T Consensus       148 ~~~~~~-----------~~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          148 IDAAKA-----------QSKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             EETTSS-----------SHHHHHHHHGGGEEEEEEEEE
T ss_pred             EcCcHH-----------HHHHHHHHHHHhcCCCeEEEE
Confidence            864321           124799999999999999988

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.30  E-value=7.8e-12  Score=116.60  Aligned_cols=106  Identities=9%  Similarity=-0.064  Sum_probs=76.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC---CCcEEEEEcChhhhhhhhhccCCCceeEEEE-
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSI-  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~---l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~-  305 (416)
                      .+.+|||||||+|.++..+++..+ .+++|+|++..+++.++++.   ..|++++++|+.+++.   ++++++||.|++ 
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~fD~V~~d  135 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAP---TLPDGHFDGILYD  135 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGG---GSCTTCEEEEEEC
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhc---ccCCCceEEEEEC
Confidence            367999999999999999977543 48999998766665554321   2689999999988632   335789999988 


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .|+... ...|.   .....++++++|+|||||+|++.
T Consensus       136 ~~~~~~-~~~~~---~~~~~~l~~~~r~LkpgG~l~~~  169 (236)
T 1zx0_A          136 TYPLSE-ETWHT---HQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             CCCCBG-GGTTT---HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             Ccccch-hhhhh---hhHHHHHHHHHHhcCCCeEEEEE
Confidence            443211 11111   11247799999999999999874

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.30  E-value=5.1e-11  Score=105.23  Aligned_cols=114  Identities=15%  Similarity=0.179  Sum_probs=91.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|||+|.++..+++  +..+++|+|++..    |.+++...+++|++++++|+.+.    +  +++++|.|++
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~--~~~~~D~i~~  106 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV----L--DKLEFNKAFI  106 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH----G--GGCCCSEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc----c--cCCCCcEEEE
Confidence            467999999999999999998  7889999997544    44445556778999999998763    2  2478999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      +.+      .+      ...+++++.++  |||.+++.+........+.+.++++++...
T Consensus       107 ~~~------~~------~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~  152 (183)
T 2yxd_A          107 GGT------KN------IEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVD  152 (183)
T ss_dssp             CSC------SC------HHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCc------cc------HHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEE
Confidence            754      11      24788999888  999999998777788889999999986543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.30  E-value=4.6e-12  Score=116.33  Aligned_cols=105  Identities=7%  Similarity=0.080  Sum_probs=78.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCC-----cEEEEEcChhhhhhhhhccCCCce
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT-----NGYFIATNATSTFRSIVASYPGKL  300 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~-----nv~f~~~Da~~l~~~~~~~~~~s~  300 (416)
                      .+.+|||||||+|.++..+++..|..+++|+|++..+++.++    ..++.     |+.++++|+...     +..+++|
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~f  103 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR-----DKRFSGY  103 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC-----CGGGTTC
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc-----ccccCCC
Confidence            467999999999999999999988899999998666555543    33343     899999998654     2246789


Q ss_pred             eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      |.|+++..-.+....      ....+++++.++|||||.++. +++
T Consensus       104 D~V~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~i~-~~~  142 (219)
T 3jwg_A          104 DAATVIEVIEHLDEN------RLQAFEKVLFEFTRPQTVIVS-TPN  142 (219)
T ss_dssp             SEEEEESCGGGCCHH------HHHHHHHHHHTTTCCSEEEEE-EEB
T ss_pred             CEEEEHHHHHhCCHH------HHHHHHHHHHHhhCCCEEEEE-ccc
Confidence            999987543332111      013889999999999996554 444

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.30  E-value=1.5e-11  Score=110.47  Aligned_cols=101  Identities=10%  Similarity=0.030  Sum_probs=78.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+++.  ..+++|+|++..++    +++...+++|++++++|+.++     ++ +++||.|++
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-----~~-~~~~D~v~~  103 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNL-----TF-DRQYDFILS  103 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGC-----CC-CCCEEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhC-----CC-CCCceEEEE
Confidence            3579999999999999999987  67999999755444    444456777899999999876     33 678999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +.+-.+....      ....+++++.++|+|||.+++.+
T Consensus       104 ~~~l~~~~~~------~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          104 TVVLMFLEAK------TIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             ESCGGGSCGG------GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cchhhhCCHH------HHHHHHHHHHHhcCCCeEEEEEE
Confidence            8654432211      12489999999999999987754

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.30  E-value=1.8e-11  Score=116.13  Aligned_cols=101  Identities=16%  Similarity=0.175  Sum_probs=80.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+++++ +.+++|+|++..+    .+++...++. +++++++|+.++     |+++++||.|+
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~  134 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL-----PFEDASFDAVW  134 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----CSCTTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-----CCCCCCccEEE
Confidence            46899999999999999999987 6899999975544    4444455664 799999999876     44578999999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +...-.|..+.        ..+++++.++|||||.+++.+
T Consensus       135 ~~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          135 ALESLHHMPDR--------GRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             EESCTTTSSCH--------HHHHHHHHTTEEEEEEEEEEE
T ss_pred             EechhhhCCCH--------HHHHHHHHHHcCCCeEEEEEE
Confidence            88655543221        488999999999999999864

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.30  E-value=4.1e-11  Score=106.54  Aligned_cols=117  Identities=15%  Similarity=0.237  Sum_probs=92.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+|||+|.++..+++..  .+++|+|++..++    +++...++ .++.++++|+.+.+    + ..+++|.|+
T Consensus        33 ~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~-~~~~~D~v~  105 (192)
T 1l3i_A           33 KNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL----C-KIPDIDIAV  105 (192)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH----T-TSCCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhc----c-cCCCCCEEE
Confidence            46799999999999999999986  7999999755444    44445666 68999999987632    2 125899998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~  364 (416)
                      +..+.++           ...+++.+.++|+|||.+++.+........+.+.+++.++..
T Consensus       106 ~~~~~~~-----------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~  154 (192)
T 1l3i_A          106 VGGSGGE-----------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDV  154 (192)
T ss_dssp             ESCCTTC-----------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCC
T ss_pred             ECCchHH-----------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCce
Confidence            8643221           148899999999999999998877777888888999988743

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.30  E-value=1.8e-11  Score=118.46  Aligned_cols=97  Identities=10%  Similarity=0.090  Sum_probs=76.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..++.+.++++++|+|++.    .|++++++.++.|++|+++|+.++     +  +++||.|++
T Consensus       122 ~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l-----~--d~~FDvV~~  194 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI-----D--GLEFDVLMV  194 (298)
T ss_dssp             TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGG-----G--GCCCSEEEE
T ss_pred             CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhC-----C--CCCcCEEEE
Confidence            47899999999998775555556799999999754    455555556888999999999886     3  578999987


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ...-|      .     ..++++++.++|||||+|.+..
T Consensus       195 ~a~~~------d-----~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          195 AALAE------P-----KRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             CTTCS------C-----HHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCCcc------C-----HHHHHHHHHHHcCCCcEEEEEc
Confidence            53211      1     1489999999999999999975

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.29  E-value=1.1e-11  Score=110.20  Aligned_cols=123  Identities=14%  Similarity=0.216  Sum_probs=90.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+.+|||+|||+|.++..++++.   +++|+|++..+++.     ..|++++++|+.+.    +  .+++||.|+++.|-
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-----~~~~~~~~~d~~~~----~--~~~~fD~i~~n~~~   88 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-----HRGGNLVRADLLCS----I--NQESVDVVVFNPPY   88 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-----CSSSCEEECSTTTT----B--CGGGCSEEEECCCC
T ss_pred             CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-----ccCCeEEECChhhh----c--ccCCCCEEEECCCC
Confidence            35799999999999999999986   99999998888775     56799999999763    2  35899999998543


Q ss_pred             CCCCCcch-hhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919          310 PDFNRPEH-RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  367 (416)
Q Consensus       310 pw~k~~h~-krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~  367 (416)
                      -|...... ........+++++.+.| |||.+++.+......+.+.+.+++.+|.....
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~  146 (170)
T 3q87_B           89 VPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRIL  146 (170)
T ss_dssp             BTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEE
Confidence            33222100 00000126788888888 99999997755556777888899998865443

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.29  E-value=8.2e-12  Score=116.89  Aligned_cols=124  Identities=19%  Similarity=0.196  Sum_probs=90.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC--CCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG--ITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~--l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+.+|||||||+|.++..+++.. ..+++|+|++..+++.+++.-  ..+++++++|+..+     ++++++||.|++.+
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~~  166 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA-----TLPPNTYDLIVIQW  166 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGC-----CCCSSCEEEEEEES
T ss_pred             CCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHC-----CCCCCCeEEEEEcc
Confidence            46899999999999999999886 557999998877777665432  26899999999876     33578999999875


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH---------------HHHHHHHHHHhCCCCce
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE---------------VMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~---------------~~~~~~~~~~~~~~~~~  365 (416)
                      .-.+....      ....++++++++|||||.+++.+....               -.+.+.+.++++||...
T Consensus       167 ~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  233 (254)
T 1xtp_A          167 TAIYLTDA------DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV  233 (254)
T ss_dssp             CGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred             hhhhCCHH------HHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEE
Confidence            43322110      124889999999999999999752100               12445666777777644

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.29  E-value=1.6e-11  Score=116.76  Aligned_cols=127  Identities=13%  Similarity=0.107  Sum_probs=89.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----H---hCCC-cEEEEEcChhhhhhhhh--ccCCCce
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----L---SGIT-NGYFIATNATSTFRSIV--ASYPGKL  300 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~---~~l~-nv~f~~~Da~~l~~~~~--~~~~~s~  300 (416)
                      +.+|||||||+|.+++.+|++.|..+++|+|++..+.+.++    .   +++. +++++++|+.++.....  ++.+++|
T Consensus        37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~f  116 (260)
T 2ozv_A           37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHF  116 (260)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCE
T ss_pred             CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCc
Confidence            57899999999999999999999999999998666555443    3   4454 59999999987632110  1246789


Q ss_pred             eEEEEECCCCCCCCc-----chhh-------hhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhC
Q 014919          301 ILVSIQCPNPDFNRP-----EHRW-------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  360 (416)
Q Consensus       301 D~v~~~fpdpw~k~~-----h~kr-------Rl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~  360 (416)
                      |.|+++  .|++...     ...+       ......+++.+.++|||||.|++...... ..++.+.+.+.
T Consensus       117 D~Vv~n--PPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~l~~~  185 (260)
T 2ozv_A          117 HHVIMN--PPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQS-VAEIIAACGSR  185 (260)
T ss_dssp             EEEEEC--CCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGG-HHHHHHHHTTT
T ss_pred             CEEEEC--CCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHH-HHHHHHHHHhc
Confidence            999998  3443221     0000       11236889999999999999999887654 34466666553

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.29  E-value=2.4e-11  Score=117.98  Aligned_cols=124  Identities=14%  Similarity=0.139  Sum_probs=88.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh------C--CCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------G--ITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~------~--l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      +..+|||||||+|..+..+++..|..+++++|++..+++.++++      +  .++++++++|+.+.++.    .+++||
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~fD  165 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK----FKNEFD  165 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG----CSSCEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh----CCCCce
Confidence            45799999999999999999987888999999866555544322      2  36899999999876431    357899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhC
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  360 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~  360 (416)
                      .|+++.++||...   ...+...++++.++++|+|||.+++.+..    ......+.+.+++.
T Consensus       166 ~Ii~d~~~~~~~~---~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~  225 (296)
T 1inl_A          166 VIIIDSTDPTAGQ---GGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV  225 (296)
T ss_dssp             EEEEEC-------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCcccCc---hhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH
Confidence            9999888886422   12234569999999999999999998644    33455556666664

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.29  E-value=4.5e-12  Score=117.54  Aligned_cols=115  Identities=10%  Similarity=0.132  Sum_probs=88.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccC-CCceeEEEEECC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY-PGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~-~~s~D~v~~~fp  308 (416)
                      .+.+|||||||+|.++..+++.  ..+++|+|++..+++.++++ ..|++|+++|+.+.+    |+. +++||.|+++ +
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~d~~~~~----~~~~~~~fD~v~~~-~  119 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN-APHADVYEWNGKGEL----PAGLGAPFGLIVSR-R  119 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH-CTTSEEEECCSCSSC----CTTCCCCEEEEEEE-S
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh-CCCceEEEcchhhcc----CCcCCCCEEEEEeC-C
Confidence            4689999999999999999998  57999999988888877666 678999999995432    335 7899999987 3


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~  366 (416)
                      ++.             .++++++++|||||.++..... ...+.+.+.+.+.|+....
T Consensus       120 ~~~-------------~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~l~~~Gf~~~~  163 (226)
T 3m33_A          120 GPT-------------SVILRLPELAAPDAHFLYVGPR-LNVPEVPERLAAVGWDIVA  163 (226)
T ss_dssp             CCS-------------GGGGGHHHHEEEEEEEEEEESS-SCCTHHHHHHHHTTCEEEE
T ss_pred             CHH-------------HHHHHHHHHcCCCcEEEEeCCc-CCHHHHHHHHHHCCCeEEE
Confidence            332             6788999999999999843221 1233466778888876443

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.29  E-value=2e-11  Score=112.41  Aligned_cols=102  Identities=13%  Similarity=0.086  Sum_probs=78.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHH----HHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~----~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      +.+|||||||+|.++..+|+..| +.+++|+|++.    .|.+++...++.| ++++++|+.+.++...+...++||.|+
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~  138 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF  138 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence            67999999999999999999988 78999999754    4455555667765 999999998764432211126799998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +..+.+           ..+.+++.+.++|+|||.+++.
T Consensus       139 ~d~~~~-----------~~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          139 IDADKQ-----------NNPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             ECSCGG-----------GHHHHHHHHHHTCCTTCEEEEE
T ss_pred             EcCCcH-----------HHHHHHHHHHHhcCCCcEEEEe
Confidence            753211           1258999999999999988874

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.29  E-value=7.9e-12  Score=119.39  Aligned_cols=98  Identities=14%  Similarity=0.172  Sum_probs=80.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+.+|||||||+|.++..+++  +..+++|+|++..+++.+++.. +|+.++++|+.++     + .+++||.|++++.-
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~d~~~~-----~-~~~~fD~v~~~~~l  127 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY-PHLHFDVADARNF-----R-VDKPLDAVFSNAML  127 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC-TTSCEEECCTTTC-----C-CSSCEEEEEEESCG
T ss_pred             CCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC-CCCEEEECChhhC-----C-cCCCcCEEEEcchh
Confidence            467999999999999999998  6889999999888877765543 7899999999876     3 25799999998655


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .|..+.        +.++++++++|||||.+++.+
T Consensus       128 ~~~~d~--------~~~l~~~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          128 HWVKEP--------EAAIASIHQALKSGGRFVAEF  154 (279)
T ss_dssp             GGCSCH--------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhCcCH--------HHHHHHHHHhcCCCcEEEEEe
Confidence            443321        488999999999999999875

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.28  E-value=1.9e-11  Score=111.02  Aligned_cols=110  Identities=12%  Similarity=0.100  Sum_probs=84.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC--CCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG--ITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~--l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+.+|||||||+|.++..+++..+. +++|+|++..+++.++++.  ..++.++++|+.++     ++++++||.|+++.
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~v~~~~  115 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKL-----DFPSASFDVVLEKG  115 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSC-----CSCSSCEEEEEEES
T ss_pred             CCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcC-----CCCCCcccEEEECc
Confidence            3678999999999999999998654 8999998877777665432  35899999999876     33578999998753


Q ss_pred             ---------CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919          308 ---------PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  347 (416)
Q Consensus       308 ---------pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~  347 (416)
                               ++||....++..  ....+++++.++|||||.+++.+-..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          116 TLDALLAGERDPWTVSSEGVH--TVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             HHHHHTTTCSCTTSCCHHHHH--HHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             chhhhccccccccccccchhH--HHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence                     346654332221  12589999999999999999987554

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.28  E-value=2e-11  Score=115.22  Aligned_cols=100  Identities=20%  Similarity=0.187  Sum_probs=78.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHH----HHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~----~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      +.+|||||||+|.++..+|+..| +.+++|+|++.    .|.+++++.++. |++++++|+.+.++...  ..++||.|+
T Consensus        64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~--~~~~fD~V~  141 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG--ECPAFDLIF  141 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC--SCCCCSEEE
T ss_pred             CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC--CCCCeEEEE
Confidence            68999999999999999999988 89999999754    445555566776 79999999988644221  235899998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +..+.+           -.+.+++++.++|||||.|++.
T Consensus       142 ~d~~~~-----------~~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A          142 IDADKP-----------NNPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             ECSCGG-----------GHHHHHHHHHHTCCTTCEEEEE
T ss_pred             ECCchH-----------HHHHHHHHHHHhcCCCeEEEEe
Confidence            853211           1257999999999999999874

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.28  E-value=1.5e-11  Score=113.35  Aligned_cols=103  Identities=18%  Similarity=0.301  Sum_probs=79.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----hCC-----CcEEEEEcChhhhhhhhhccCCCce
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-----TNGYFIATNATSTFRSIVASYPGKL  300 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~~l-----~nv~f~~~Da~~l~~~~~~~~~~s~  300 (416)
                      .+.+|||||||+|.++..+++.  ..+++|+|++..+++.+++    .++     .++.++++|+..+     ++.+++|
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~  102 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-----SFHDSSF  102 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-----CSCTTCE
T ss_pred             CCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-----CCCCCce
Confidence            3689999999999999999998  6799999987766665544    233     2689999999876     3357899


Q ss_pred             eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      |.|+++..-.+......     ...+++++.++|+|||.+++.+
T Consensus       103 D~v~~~~~l~~~~~~~~-----~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          103 DFAVMQAFLTSVPDPKE-----RSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             EEEEEESCGGGCCCHHH-----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEcchhhcCCCHHH-----HHHHHHHHHHHcCCCeEEEEEE
Confidence            99998854433222211     1378999999999999999864

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.28  E-value=9.4e-12  Score=119.62  Aligned_cols=116  Identities=14%  Similarity=0.114  Sum_probs=90.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      +.+|||+|||+|.+++.+|+..+. +++|+|++..+    .++++.+++.| ++|+++|+.++.      .+++||.|++
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~------~~~~fD~Vi~  198 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP------GENIADRILM  198 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC------CCSCEEEEEE
T ss_pred             CCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc------ccCCccEEEE
Confidence            689999999999999999998765 89999975544    44555568776 999999998872      2678999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc------HHHHHHHHHHHHhCCCCce
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI------EEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~------~~~~~~~~~~~~~~~~~~~  365 (416)
                      +.|...            ..+++++.++|+|||.+++.+..      .+..+.+.+.+++.++...
T Consensus       199 ~~p~~~------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~  252 (278)
T 2frn_A          199 GYVVRT------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE  252 (278)
T ss_dssp             CCCSSG------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred             CCchhH------------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeE
Confidence            643111            26889999999999999996543      3456667778888887643

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.28  E-value=1.9e-11  Score=120.78  Aligned_cols=110  Identities=17%  Similarity=0.175  Sum_probs=85.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh------CC--CcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------GI--TNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~------~l--~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      +..+|||||||+|.++..+++..|..+++++|++..+++.++++      ++  ++++++++|+.+.++. +  .+++||
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~-~--~~~~fD  196 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN-A--AEGSYD  196 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT-S--CTTCEE
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHh-c--cCCCcc
Confidence            46799999999999999999988889999999866655544432      33  5899999999886432 1  357899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      +|+++.++|+...    ..+....+++.+.++|+|||.|++.++.
T Consensus       197 lIi~d~~~p~~~~----~~l~~~~~l~~~~~~LkpgG~lv~~~~~  237 (334)
T 1xj5_A          197 AVIVDSSDPIGPA----KELFEKPFFQSVARALRPGGVVCTQAES  237 (334)
T ss_dssp             EEEECCCCTTSGG----GGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEECCCCccCcc----hhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            9999877777321    1244579999999999999999997544

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.28  E-value=1e-11  Score=116.64  Aligned_cols=99  Identities=10%  Similarity=0.126  Sum_probs=80.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh---CCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~---~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+.+|||||||+|.++..+++.  ..+++|+|++..+++.++++   ...|++++++|+.++     ++++++||.|+++
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~  111 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAI-----PLPDESVHGVIVV  111 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSC-----CSCTTCEEEEEEE
T ss_pred             CCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccC-----CCCCCCeeEEEEC
Confidence            3679999999999999999987  57999999877776665543   357899999999876     3357899999998


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +.-.|..+        ...+++++.++|||||.+++.
T Consensus       112 ~~l~~~~~--------~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          112 HLWHLVPD--------WPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             SCGGGCTT--------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CchhhcCC--------HHHHHHHHHHHCCCCcEEEEE
Confidence            76555432        148899999999999999886

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.27  E-value=1.7e-11  Score=117.93  Aligned_cols=101  Identities=13%  Similarity=0.051  Sum_probs=79.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+++.+ +.+++|+|++..+    .+++...++ .+++++++|+.++     |+++++||.|+
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~  155 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-----PCEDNSYDFIW  155 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-----SSCTTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-----CCCCCCEeEEE
Confidence            46799999999999999999986 4699999975544    444445566 4799999999876     44678999999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +...-.+...        ...+|++++++|||||.+++.+
T Consensus       156 ~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          156 SQDAFLHSPD--------KLKVFQECARVLKPRGVMAITD  187 (297)
T ss_dssp             EESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ecchhhhcCC--------HHHHHHHHHHHcCCCeEEEEEE
Confidence            8854433222        1489999999999999999874

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.26  E-value=6.6e-12  Score=114.60  Aligned_cols=121  Identities=9%  Similarity=0.006  Sum_probs=90.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      +.+|||||||+|.++..+++.  ..+++|+|++..+++.++++-  ++.++++|+..+     + .+++||.|+++..-.
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~--~~~~~~~d~~~~-----~-~~~~fD~v~~~~~l~  113 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL--GRPVRTMLFHQL-----D-AIDAYDAVWAHACLL  113 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH--TSCCEECCGGGC-----C-CCSCEEEEEECSCGG
T ss_pred             CCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc--CCceEEeeeccC-----C-CCCcEEEEEecCchh
Confidence            679999999999999999987  569999999877777665432  577889998876     3 478999999875433


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH--------------HHHHHHHHHHhCC-CCceee
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE--------------VMLRMKQQFLEYG-KGKLVL  367 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~--------------~~~~~~~~~~~~~-~~~~~~  367 (416)
                      +...      -....++++++++|||||.+++.+....              -.+.+.+.+++.| |.....
T Consensus       114 ~~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~  179 (211)
T 3e23_A          114 HVPR------DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV  179 (211)
T ss_dssp             GSCH------HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred             hcCH------HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence            2210      0124889999999999999999743211              2455677788888 875443

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.26  E-value=3.1e-11  Score=121.09  Aligned_cols=119  Identities=18%  Similarity=0.213  Sum_probs=85.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCC---cEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT---NGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~---nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      +.+|||+|||+|.+++.+++.+|..+++|+|++..    |.++++.+++.   +++|+++|+.+.    +  ++++||.|
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~----~--~~~~fD~I  296 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG----V--EPFRFNAV  296 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT----C--CTTCEEEE
T ss_pred             CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc----C--CCCCeeEE
Confidence            47999999999999999999999999999997554    44555556654   699999998764    2  46799999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC-cHHHHHHHHHHHH
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFL  358 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD-~~~~~~~~~~~~~  358 (416)
                      +++.  |++.... ..+.....+++++.++|||||++++... ...|...+.+.+.
T Consensus       297 i~np--pfh~~~~-~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg  349 (375)
T 4dcm_A          297 LCNP--PFHQQHA-LTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG  349 (375)
T ss_dssp             EECC--CC--------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred             EECC--CcccCcc-cCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC
Confidence            9983  4432111 1111234789999999999999999753 3345555555543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.26  E-value=1.5e-11  Score=111.82  Aligned_cols=97  Identities=13%  Similarity=0.096  Sum_probs=78.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||||||+|.++..+++.+|+.+++|+|++..+.    +++...+++|++++++|+.++     + ++++||.|+++
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~D~i~~~  139 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF-----P-SEPPFDGVISR  139 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS-----C-CCSCEEEEECS
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhC-----C-ccCCcCEEEEe
Confidence            5789999999999999999999999999999755544    444556788899999999876     2 35789999875


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      ...+            ...+++.+.++|+|||.+++...
T Consensus       140 ~~~~------------~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          140 AFAS------------LNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             CSSS------------HHHHHHHHTTSEEEEEEEEEEES
T ss_pred             ccCC------------HHHHHHHHHHhcCCCcEEEEEeC
Confidence            2211            14889999999999999999753

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.26  E-value=8.6e-12  Score=120.98  Aligned_cols=104  Identities=12%  Similarity=0.018  Sum_probs=78.7

Q ss_pred             CCCeEEEEeccccHHHHHHH-HhCCCCeEEEEchHHHHHHHH----HHhCCC-cEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMA-RKRKDLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA-~~~p~~~~iGvD~~~~a~~~a----~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||||||+|.++..+| ...|+.+++|+|++..+++.+    ...++. +++|+++|+.++     +++ ++||.|
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~-~~fD~v  191 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL-----DTR-EGYDLL  191 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC-----CCC-SCEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC-----Ccc-CCeEEE
Confidence            36899999999999999997 568899999999765554444    344555 499999999886     334 899999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +++.+-.+.....     ....++++++++|||||.+++.+
T Consensus       192 ~~~~~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          192 TSNGLNIYEPDDA-----RVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             ECCSSGGGCCCHH-----HHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECChhhhcCCHH-----HHHHHHHHHHHhcCCCeEEEEEe
Confidence            9865433322211     12368999999999999999864

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.26  E-value=4.5e-11  Score=114.81  Aligned_cols=123  Identities=10%  Similarity=0.121  Sum_probs=93.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh------CC--CcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------GI--TNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~------~l--~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      +..+|||||||+|..+..+++..|..+++++|++..+++.++++      ++  ++++++.+|+.+.++.    .+++||
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~----~~~~fD  150 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK----SENQYD  150 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT----CCSCEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh----CCCCee
Confidence            46899999999999999999877788999999866655554432      23  5799999999886432    357899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhC
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  360 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~  360 (416)
                      .|++..++|+....    .+...++++.++++|+|||.+++.+..    .+....+.+.+++.
T Consensus       151 ~Ii~d~~~~~~~~~----~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~  209 (275)
T 1iy9_A          151 VIMVDSTEPVGPAV----NLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI  209 (275)
T ss_dssp             EEEESCSSCCSCCC----CCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCCcch----hhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh
Confidence            99998877763221    233458999999999999999998643    34455666667665

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.26  E-value=3.3e-11  Score=110.28  Aligned_cols=102  Identities=19%  Similarity=0.234  Sum_probs=79.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+.+|||||||+|.++..+++.  ..+++|+|++..+++.+++.  .++.+.++|+.++....++ ...+||.|++++.-
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~-~~~~fD~v~~~~~l  126 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA--GAGEVHLASYAQLAEAKVP-VGKDYDLICANFAL  126 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT--CSSCEEECCHHHHHTTCSC-CCCCEEEEEEESCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh--cccccchhhHHhhcccccc-cCCCccEEEECchh
Confidence            3589999999999999999988  66999999988888877665  6788999999886322121 34559999988543


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      . +..        ...++++++++|||||.+++.+.
T Consensus       127 ~-~~~--------~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          127 L-HQD--------IIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             C-SSC--------CHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             h-hhh--------HHHHHHHHHHHhCCCeEEEEEec
Confidence            3 111        13899999999999999999764

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.25  E-value=2.3e-11  Score=108.43  Aligned_cols=124  Identities=12%  Similarity=0.101  Sum_probs=91.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+.+|||||||+|.++..+++.  ..+++|+|++..+++.++++ .+|+.++++|+.++     +++++++|.|+++.+-
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~-~~~~~~~~~d~~~~-----~~~~~~~D~i~~~~~~  117 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQD-FPEARWVVGDLSVD-----QISETDFDLIVSAGNV  117 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHH-CTTSEEEECCTTTS-----CCCCCCEEEEEECCCC
T ss_pred             CCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHh-CCCCcEEEcccccC-----CCCCCceeEEEECCcH
Confidence            4689999999999999999987  57999999988777776544 36799999999875     3356889999886221


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH--HHHHHHHHHHhCCCCcee
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE--VMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~--~~~~~~~~~~~~~~~~~~  366 (416)
                      -++....     ....+++++.++|+|||.+++.+....  ..+.+.+.+++.|+....
T Consensus       118 ~~~~~~~-----~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  171 (195)
T 3cgg_A          118 MGFLAED-----GREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELEN  171 (195)
T ss_dssp             GGGSCHH-----HHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEE
T ss_pred             HhhcChH-----HHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEee
Confidence            1111100     124889999999999999999754322  245677788888876443

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.25  E-value=3e-11  Score=117.53  Aligned_cols=100  Identities=16%  Similarity=0.085  Sum_probs=80.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+++++ ..+++|+|++..    |.+++...++. |++|+++|+.++     ++++++||.|+
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V~  190 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-----PFDKGAVTASW  190 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-----CCCTTCEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-----CCCCCCEeEEE
Confidence            46899999999999999999986 579999997544    44455556765 799999999876     34578999999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ++..-.+..         ...+++++.++|||||++++.+
T Consensus       191 ~~~~l~~~~---------~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          191 NNESTMYVD---------LHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             EESCGGGSC---------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCchhhCC---------HHHHHHHHHHHcCCCcEEEEEE
Confidence            875444321         2589999999999999999875

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.25  E-value=3.5e-11  Score=116.28  Aligned_cols=106  Identities=13%  Similarity=0.106  Sum_probs=78.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+|+.++ .+++|+|++..+    .+++...++. |++++++|+.++        +++||.|+
T Consensus        72 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~~~fD~v~  142 (302)
T 3hem_A           72 PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--------DEPVDRIV  142 (302)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--------CCCCSEEE
T ss_pred             CcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--------CCCccEEE
Confidence            467999999999999999999977 899999975544    4444555766 899999998764        57899998


Q ss_pred             EECCCCCCCCcchh-hhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHR-WRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~k-rRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ++..-.+..++... .+-..+.+++++.++|||||.+++.+
T Consensus       143 ~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          143 SLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  183 (302)
T ss_dssp             EESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred             EcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            86432222111000 00112589999999999999999864

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.25  E-value=4e-11  Score=117.82  Aligned_cols=123  Identities=11%  Similarity=0.111  Sum_probs=93.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh------C--CCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------G--ITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~------~--l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      +..+|||||||+|..+..+++..|..+++++|++..+++.++++      +  .++++++++|+.+.++.    .+++||
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~fD  191 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN----VTNTYD  191 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH----CCSCEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh----cCCCce
Confidence            46799999999999999999887889999999877766665442      1  25799999999876431    367899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhC
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  360 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~  360 (416)
                      .|+++.++|+..    ...+...++++.+.++|+|||.+++.+.+    .+....+.+.+++.
T Consensus       192 vIi~d~~~p~~~----~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~  250 (321)
T 2pt6_A          192 VIIVDSSDPIGP----AETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL  250 (321)
T ss_dssp             EEEEECCCSSSG----GGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT
T ss_pred             EEEECCcCCCCc----chhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH
Confidence            999998888731    12344469999999999999999997543    23445555666654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.25  E-value=3.9e-11  Score=111.95  Aligned_cols=111  Identities=16%  Similarity=0.218  Sum_probs=89.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+|||+|.++..+++.  ..+++++|++..+++.    ....++ +|+.++.+|+.+..   +  .++++|.|+
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~--~~~~~D~v~  163 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE---V--PEGIFHAAF  163 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC---C--CTTCBSEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc---c--CCCcccEEE
Confidence            3679999999999999999998  6799999976554444    444566 68999999987651   1  356899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhC
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  360 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~  360 (416)
                      ++.|+||             .+++++.++|+|||.+++.+........+.+.+.+.
T Consensus       164 ~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~  206 (248)
T 2yvl_A          164 VDVREPW-------------HYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY  206 (248)
T ss_dssp             ECSSCGG-------------GGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred             ECCcCHH-------------HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence            9766664             678999999999999999998777777777777665

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.25  E-value=1.5e-11  Score=108.24  Aligned_cols=95  Identities=13%  Similarity=0.253  Sum_probs=78.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+.+|||||||+|.++..+++...  +++|+|++..+++.+++. .+|++++++|   +     ++++++||.|+++..-
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-~~~v~~~~~d---~-----~~~~~~~D~v~~~~~l   85 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK-FDSVITLSDP---K-----EIPDNSVDFILFANSF   85 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH-CTTSEEESSG---G-----GSCTTCEEEEEEESCS
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh-CCCcEEEeCC---C-----CCCCCceEEEEEccch
Confidence            467999999999999999999873  999999988887777665 6789999999   2     2357899999998655


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .+..+        ...+++++.++|||||.+++.
T Consensus        86 ~~~~~--------~~~~l~~~~~~L~pgG~l~~~  111 (170)
T 3i9f_A           86 HDMDD--------KQHVISEVKRILKDDGRVIII  111 (170)
T ss_dssp             TTCSC--------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcccC--------HHHHHHHHHHhcCCCCEEEEE
Confidence            54322        148899999999999999986

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.25  E-value=1.3e-11  Score=111.64  Aligned_cols=120  Identities=14%  Similarity=0.193  Sum_probs=82.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC--CCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhh-------------------
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK--DLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF-------------------  289 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p--~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~-------------------  289 (416)
                      +.+|||||||+|.++..+++++|  ..+++|+|++..       ...+|++++++|+.+..                   
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~-------~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~   95 (201)
T 2plw_A           23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM-------DPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVD   95 (201)
T ss_dssp             TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC-------CCCTTCEEEECCTTTTSSCCC-----------CHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc-------CCCCCceEEEccccchhhhhhccccccccccchhhH
Confidence            57899999999999999999988  689999998762       23568999999997651                   


Q ss_pred             ---hhhhccCCCceeEEEEECCCCCCCC---cchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHh
Q 014919          290 ---RSIVASYPGKLILVSIQCPNPDFNR---PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE  359 (416)
Q Consensus       290 ---~~~~~~~~~s~D~v~~~fpdpw~k~---~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~  359 (416)
                         ...+  ++++||.|+++.+.+|...   .+.+..-....+++++.++|||||.|++.+-.......+.+.+..
T Consensus        96 ~~~~~~~--~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~  169 (201)
T 2plw_A           96 YKLKEIL--QDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKG  169 (201)
T ss_dssp             HHHHHHH--TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHT
T ss_pred             HHHHhhc--CCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHH
Confidence               0012  4578999998765444311   111100112358899999999999999864322223344555554

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.24  E-value=2e-11  Score=111.68  Aligned_cols=105  Identities=12%  Similarity=0.121  Sum_probs=81.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      ...+|||||||+|.++..+++..  .+++|+|++..+++.++++  ...|++++++|+.++     + ++++||.|+++.
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-----~-~~~~fD~v~~~~  122 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQF-----S-TAELFDLIVVAE  122 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTC-----C-CSCCEEEEEEES
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhC-----C-CCCCccEEEEcc
Confidence            35789999999999999999885  5899999887777766543  234899999999886     2 478999999986


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  347 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~  347 (416)
                      .-.|......     ...+++++.++|||||.+++.+...
T Consensus       123 ~l~~~~~~~~-----~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          123 VLYYLEDMTQ-----MRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             CGGGSSSHHH-----HHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             HHHhCCCHHH-----HHHHHHHHHHHcCCCCEEEEEecCC
Confidence            5444332211     1378999999999999999976443

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.24  E-value=1e-11  Score=117.71  Aligned_cols=97  Identities=16%  Similarity=0.200  Sum_probs=77.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+.+|||||||+|.++..+++  |..+++|+|++..+++.++...  |++|+++|+.++     ++++++||.|++.+.-
T Consensus        34 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~--~~~~~~~d~~~~-----~~~~~~fD~v~~~~~l  104 (261)
T 3ege_A           34 KGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP--QVEWFTGYAENL-----ALPDKSVDGVISILAI  104 (261)
T ss_dssp             TTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT--TEEEECCCTTSC-----CSCTTCBSEEEEESCG
T ss_pred             CCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc--CCEEEECchhhC-----CCCCCCEeEEEEcchH
Confidence            468999999999999999997  6789999999887777554332  999999999876     4457899999988654


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .+..+        .+.++++++++|| ||.+++.+
T Consensus       105 ~~~~~--------~~~~l~~~~~~Lk-gG~~~~~~  130 (261)
T 3ege_A          105 HHFSH--------LEKSFQEMQRIIR-DGTIVLLT  130 (261)
T ss_dssp             GGCSS--------HHHHHHHHHHHBC-SSCEEEEE
T ss_pred             hhccC--------HHHHHHHHHHHhC-CcEEEEEE
Confidence            33211        1489999999999 99777754

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.24  E-value=7e-11  Score=115.61  Aligned_cols=126  Identities=13%  Similarity=0.112  Sum_probs=92.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH------hC---CCcEEEEEcChhhhhhhhhccCCCce
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL------SG---ITNGYFIATNATSTFRSIVASYPGKL  300 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~------~~---l~nv~f~~~Da~~l~~~~~~~~~~s~  300 (416)
                      +..+|||||||+|.++..+++..|..+++++|++..+++.+++      .+   .++++++++|+.+.++.    .+++|
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~f  152 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER----TEERY  152 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH----CCCCE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh----cCCCc
Confidence            4689999999999999999998788899999986555544432      12   36899999999886432    36789


Q ss_pred             eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc-----HHHHHHHHHHHHhC
Q 014919          301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEY  360 (416)
Q Consensus       301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~-----~~~~~~~~~~~~~~  360 (416)
                      |.|++..++|+.. .....++...++++.++++|+|||.+++.+..     .+....+.+.+++.
T Consensus       153 D~Ii~d~~~~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~  216 (314)
T 1uir_A          153 DVVIIDLTDPVGE-DNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA  216 (314)
T ss_dssp             EEEEEECCCCBST-TCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT
T ss_pred             cEEEECCCCcccc-cCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH
Confidence            9999998887610 01122344579999999999999999987422     23455566666654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.24  E-value=1.7e-11  Score=113.94  Aligned_cols=123  Identities=11%  Similarity=0.065  Sum_probs=89.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-----CCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-----GITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-----~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ..+|||||||+|.++..+++  +..+++|+|++..+++.+++.     ...|++|+++|+.++     + ++++||.|++
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~fD~v~~  138 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTW-----R-PTELFDLIFD  138 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTC-----C-CSSCEEEEEE
T ss_pred             CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcC-----C-CCCCeeEEEE
Confidence            45999999999999999986  577999999877666655432     235799999999876     2 3569999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH----------HHHHHHHHHHHhCCCCceee
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----------EVMLRMKQQFLEYGKGKLVL  367 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~----------~~~~~~~~~~~~~~~~~~~~  367 (416)
                      +....+....      ....+++++.++|||||.+++..-..          .-.+++.+.+++.||.....
T Consensus       139 ~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  204 (235)
T 3lcc_A          139 YVFFCAIEPE------MRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSV  204 (235)
T ss_dssp             ESSTTTSCGG------GHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred             ChhhhcCCHH------HHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEE
Confidence            8655543211      12489999999999999998853210          11355677888888875443

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.24  E-value=4.3e-11  Score=104.82  Aligned_cols=103  Identities=14%  Similarity=0.136  Sum_probs=75.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +..|||+|||+|.++..+++..+.  ++|+|++..+    .+++...++ |++++++|+.+.++.. +..+++||.|+++
T Consensus        42 ~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-~~~~~~~D~i~~~  117 (171)
T 1ws6_A           42 RGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEA-KAQGERFTVAFMA  117 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHH-HHTTCCEEEEEEC
T ss_pred             CCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhh-hccCCceEEEEEC
Confidence            678999999999999999998664  9999975544    444445666 8999999998853322 1123589999987


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHH--hhccCCcEEEEEeCcH
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDIE  347 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~--r~LkpgG~l~l~tD~~  347 (416)
                      .  |++  .+.      +.+++.+.  ++|+|||.+++.+...
T Consensus       118 ~--~~~--~~~------~~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          118 P--PYA--MDL------AALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             C--CTT--SCT------THHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             C--CCc--hhH------HHHHHHHHhhcccCCCcEEEEEeCCc
Confidence            3  343  111      25566666  9999999999987543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.24  E-value=4.8e-11  Score=116.35  Aligned_cols=122  Identities=13%  Similarity=0.135  Sum_probs=85.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh------C--CCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------G--ITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~------~--l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      +..+|||||||+|.++..+++..|..+++++|++..+++.++++      +  .++++++++|+.+.++.    .+++||
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~----~~~~fD  170 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ----NQDAFD  170 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT----CSSCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh----CCCCce
Confidence            46899999999999999999988889999999866555444321      2  36899999999886432    367899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHh
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLE  359 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~  359 (416)
                      .|++..++|+....    .+...++++++.++|+|||.+++.+..    ......+.+.+++
T Consensus       171 ~Ii~d~~~~~~~~~----~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~  228 (304)
T 2o07_A          171 VIITDSSDPMGPAE----SLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQS  228 (304)
T ss_dssp             EEEEECC---------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCcch----hhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence            99999888763221    123458999999999999999987522    2334445444444

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.24  E-value=5.9e-11  Score=114.27  Aligned_cols=121  Identities=11%  Similarity=0.075  Sum_probs=89.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-----C---------CCcEEEEEcChhhhhhhhhcc
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-----G---------ITNGYFIATNATSTFRSIVAS  295 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-----~---------l~nv~f~~~Da~~l~~~~~~~  295 (416)
                      ++.+|||||||+|.++..+++. |..+++++|++..+++.++++     +         .++++++++|+.+.+..    
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~----  149 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN----  149 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH----
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc----
Confidence            4679999999999999999998 888999999866655554432     2         35799999999876431    


Q ss_pred             CCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhC
Q 014919          296 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  360 (416)
Q Consensus       296 ~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~  360 (416)
                       +++||.|++..++|+...    ..+...++++.++++|+|||.+++.+..    .+....+.+.+++.
T Consensus       150 -~~~fD~Ii~d~~~~~~~~----~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~  213 (281)
T 1mjf_A          150 -NRGFDVIIADSTDPVGPA----KVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV  213 (281)
T ss_dssp             -CCCEEEEEEECCCCC---------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH
T ss_pred             -cCCeeEEEECCCCCCCcc----hhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH
Confidence             578999999988876321    1233568999999999999999997532    34455555555554

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.24  E-value=4.8e-11  Score=116.77  Aligned_cols=122  Identities=10%  Similarity=-0.043  Sum_probs=91.8

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh----CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~----~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+|||||||+|.++..+++.+|+.++++||+...+++.++++    .-++++++++|+.+++.. +  .+++||.|++..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~-~--~~~~fDvIi~D~  167 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAES-F--TPASRDVIIRDV  167 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHT-C--CTTCEEEEEECC
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhh-c--cCCCCCEEEECC
Confidence            389999999999999999999999999999877766666543    235799999999987542 1  367899999987


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc-H--HHHHHHHHHHHhC
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-E--EVMLRMKQQFLEY  360 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~-~--~~~~~~~~~~~~~  360 (416)
                      .+|+....    .+...+|++.++++|+|||.|.+.+-. .  .++..+.+.+.+.
T Consensus       168 ~~~~~~~~----~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~v  219 (317)
T 3gjy_A          168 FAGAITPQ----NFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEV  219 (317)
T ss_dssp             STTSCCCG----GGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CCccccch----hhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHH
Confidence            67753221    245579999999999999999987531 1  2334455555553

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.24  E-value=2.3e-11  Score=110.89  Aligned_cols=98  Identities=9%  Similarity=0.082  Sum_probs=78.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCC-eEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~-~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+.+|||||||+|.++..+     .. +++|+|++..+++.++++. .++.++++|+.++     ++++++||.|+++..
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~d~~~~-----~~~~~~fD~v~~~~~  104 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-PEATWVRAWGEAL-----PFPGESFDVVLLFTT  104 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-TTSEEECCCTTSC-----CSCSSCEEEEEEESC
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-CCcEEEEcccccC-----CCCCCcEEEEEEcCh
Confidence            4689999999999998877     34 8999999888877776554 7899999999876     435789999998865


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      ..+..+.        ..+++++.++|||||.+++.+.+
T Consensus       105 l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A          105 LEFVEDV--------ERVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             TTTCSCH--------HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhcCCH--------HHHHHHHHHHcCCCCEEEEEecC
Confidence            5543221        48899999999999999997543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.24  E-value=5.1e-11  Score=109.74  Aligned_cols=102  Identities=17%  Similarity=0.200  Sum_probs=77.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHH----HHHHHHHhCCCc-EEEEEcChhhhhhhhhc-cCCCceeEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGITN-GYFIATNATSTFRSIVA-SYPGKLILV  303 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~----a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~-~~~~s~D~v  303 (416)
                      +.+|||||||+|.++..+|+..| +.+++|+|++..    |.++++..++.+ ++++++|+.+.++.... ...++||.|
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v  144 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI  144 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence            57999999999999999999987 899999997544    445555667764 99999999876443210 001789999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ++.   ++.  .      ....+++.+.++|+|||.|++.
T Consensus       145 ~~~---~~~--~------~~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          145 YID---ADK--A------NTDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             EEC---SCG--G------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEC---CCH--H------HHHHHHHHHHHhcCCCcEEEEe
Confidence            864   331  1      1247899999999999999884

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.23  E-value=2.3e-11  Score=115.35  Aligned_cols=101  Identities=14%  Similarity=0.185  Sum_probs=83.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+.+|||||||+|.++..+++..|..+++|+|++..+++.+++.. .++.+..+|+.++     ++.+++||.|+++++ 
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~d~~~~-----~~~~~~fD~v~~~~~-  157 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-PQVTFCVASSHRL-----PFSDTSMDAIIRIYA-  157 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-TTSEEEECCTTSC-----SBCTTCEEEEEEESC-
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-CCcEEEEcchhhC-----CCCCCceeEEEEeCC-
Confidence            468999999999999999999988899999999888888776554 6799999999876     335789999998754 


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHH
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVML  351 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~  351 (416)
                      +              .+++++.++|||||.+++.+.......
T Consensus       158 ~--------------~~l~~~~~~L~pgG~l~~~~~~~~~~~  185 (269)
T 1p91_A          158 P--------------CKAEELARVVKPGGWVITATPGPRHLM  185 (269)
T ss_dssp             C--------------CCHHHHHHHEEEEEEEEEEEECTTTTH
T ss_pred             h--------------hhHHHHHHhcCCCcEEEEEEcCHHHHH
Confidence            1              357899999999999999876554433

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.23  E-value=5e-11  Score=112.97  Aligned_cols=118  Identities=16%  Similarity=0.267  Sum_probs=91.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|||+|.+++.+++..+  +++|+|++    ..|.+++..+++. +++.++|+.+.    +  ++++||.|++
T Consensus       120 ~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~----~--~~~~fD~Vv~  190 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA----L--PFGPFDLLVA  190 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH----G--GGCCEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc----C--cCCCCCEEEE
Confidence            368999999999999999998755  99999964    4555566666766 99999998764    2  2568999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  367 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~  367 (416)
                      +.+.      |+     ...+++.+.++|+|||.+++........+.+.+.++++|+.....
T Consensus       191 n~~~------~~-----~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~  241 (254)
T 2nxc_A          191 NLYA------EL-----HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             ECCH------HH-----HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred             CCcH------HH-----HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEE
Confidence            8431      11     248899999999999999997655556777888899999875443

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.23  E-value=2.9e-11  Score=116.08  Aligned_cols=103  Identities=13%  Similarity=0.112  Sum_probs=79.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC-CeEEEEchHHHHHHHHHHh--C-CCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLS--G-ITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~~a~~~a~~~--~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+++.+|. .+++|+|++..+.+.+++.  . ..|++|+++|+.++     ++ +++||.|++
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~-----~~-~~~fD~v~~   95 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-----EL-NDKYDIAIC   95 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTC-----CC-SSCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhc-----Cc-CCCeeEEEE
Confidence            4689999999999999999999985 8999999866555544332  1 23899999999876     32 569999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      +..-.+..+        .+.++++++++|||||.+++....
T Consensus        96 ~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           96 HAFLLHMTT--------PETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             ESCGGGCSS--------HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CChhhcCCC--------HHHHHHHHHHHcCCCCEEEEEecc
Confidence            864333221        148999999999999999986543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.23  E-value=3.4e-11  Score=115.42  Aligned_cols=113  Identities=15%  Similarity=0.207  Sum_probs=86.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|||+|.+++.+|+..+..+++|+|++..    |.++++.++++|+.|+++|+.++ +     ..+++|.|++
T Consensus       119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~-----~~~~~D~Vi~  192 (272)
T 3a27_A          119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-E-----LKDVADRVIM  192 (272)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-C-----CTTCEEEEEE
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-C-----ccCCceEEEE
Confidence            368999999999999999999988889999997554    44555667889999999999876 2     2568999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH-----HHHHHHHHHHHhC
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-----EVMLRMKQQFLEY  360 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~-----~~~~~~~~~~~~~  360 (416)
                      +.|.    .        ...++..+.+.|+|||.+++.+...     +......+.+.+.
T Consensus       193 d~p~----~--------~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~  240 (272)
T 3a27_A          193 GYVH----K--------THKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEK  240 (272)
T ss_dssp             CCCS----S--------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHH
T ss_pred             CCcc----c--------HHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHH
Confidence            7442    1        1267899999999999999875432     3444555555553

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.23  E-value=3.6e-11  Score=110.44  Aligned_cols=101  Identities=16%  Similarity=0.150  Sum_probs=76.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||||||+|.++..+++..+  +++|+|++..+++.+    ...+ .|++++++|+.++     +++++++|.|+++
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~-----~~~~~~~D~v~~~  110 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKL-----SFEDKTFDYVIFI  110 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSC-----CSCTTCEEEEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcC-----CCCCCcEEEEEEc
Confidence            67999999999999999999876  899999765554443    3334 7899999999875     3356799999988


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      .+..++...      ....++++++++|+|||.+++.+.
T Consensus       111 ~~~~~~~~~------~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A          111 DSIVHFEPL------ELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             SCGGGCCHH------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CchHhCCHH------HHHHHHHHHHHHcCCCcEEEEEec
Confidence            431121111      124789999999999999988754

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.23  E-value=1.9e-11  Score=106.99  Aligned_cols=122  Identities=14%  Similarity=0.097  Sum_probs=87.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhh-----hhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF-----RSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~-----~~~~~~~~~s~D~v  303 (416)
                      .+.+|||+|||+|.++..+++.+ |+.+++|+|++. +.      ...+++++++|+.+..     +..+  ++++||.|
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~------~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~D~i   92 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MD------PIVGVDFLQGDFRDELVMKALLERV--GDSKVQVV   92 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CC------CCTTEEEEESCTTSHHHHHHHHHHH--TTCCEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cc------ccCcEEEEEcccccchhhhhhhccC--CCCceeEE
Confidence            36799999999999999999984 778999999876 32      2378999999998751     1113  46799999


Q ss_pred             EEECCCCCCCCcchhh---hhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhC
Q 014919          304 SIQCPNPDFNRPEHRW---RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  360 (416)
Q Consensus       304 ~~~fpdpw~k~~h~kr---Rl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~  360 (416)
                      +++.+..|....+...   .-....+++++.++|+|||.+++.+........+.+.+.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~  152 (180)
T 1ej0_A           93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL  152 (180)
T ss_dssp             EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH
T ss_pred             EECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh
Confidence            9986655543321110   01125889999999999999999754444445556666553

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.22  E-value=7.9e-11  Score=113.55  Aligned_cols=123  Identities=11%  Similarity=0.091  Sum_probs=93.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--------CCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--------~l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      ++.+|||||||+|..+..+++..|..+++++|++..+++.++++        ..+|++++++|+.+.++.    .+++||
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~fD  153 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN----VTNTYD  153 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH----CCSCEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh----CCCCce
Confidence            46899999999999999999887889999999877666655432        136899999999886432    367899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhC
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  360 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~  360 (416)
                      .|++..++|+..    ...+...++++.++++|+|||.+.+.+.+    ......+.+.+++.
T Consensus       154 ~Ii~d~~~~~~~----~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~  212 (283)
T 2i7c_A          154 VIIVDSSDPIGP----AETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL  212 (283)
T ss_dssp             EEEEECCCTTTG----GGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCCc----chhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHH
Confidence            999988888632    22344579999999999999999998542    23445555556554

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.21  E-value=4e-11  Score=106.77  Aligned_cols=106  Identities=13%  Similarity=0.129  Sum_probs=76.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..|||+|||+|.++..+++. +..+++|+|++..+    .+++...++ +|++++++|+.+.++. ++..+++||.|+
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~fD~i~  121 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ-FYEEKLQFDLVL  121 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH-HHHTTCCEEEEE
T ss_pred             CCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHH-HHhcCCCCCEEE
Confidence            3679999999999999998874 56799999975544    444555666 4899999999886432 122367899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHH--HhhccCCcEEEEEeCc
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAV--SDLLVHDGKVFLQSDI  346 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i--~r~LkpgG~l~l~tD~  346 (416)
                      ++.|  +...       ..+..++.+  .++|+|||.+++.+..
T Consensus       122 ~~~~--~~~~-------~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          122 LDPP--YAKQ-------EIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             ECCC--GGGC-------CHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             ECCC--CCch-------hHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            8633  3211       123566666  8899999999997654

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.21  E-value=3.2e-11  Score=116.45  Aligned_cols=105  Identities=17%  Similarity=0.220  Sum_probs=77.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCC---CcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI---TNGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l---~nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      ..+|||||||+|.++..+++.  ..+++|+|++..+++.++    ..++   .|++|+++|+.++     + .+++||.|
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~fD~v  154 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF-----A-LDKRFGTV  154 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC-----C-CSCCEEEE
T ss_pred             CCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC-----C-cCCCcCEE
Confidence            459999999999999999988  578999998665555443    3332   6899999999886     3 26899988


Q ss_pred             EEECC-CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919          304 SIQCP-NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  349 (416)
Q Consensus       304 ~~~fp-dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~  349 (416)
                      ++.+. -.|.. .     -....+|++++++|||||.|++.+.+...
T Consensus       155 ~~~~~~~~~~~-~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  195 (299)
T 3g2m_A          155 VISSGSINELD-E-----ADRRGLYASVREHLEPGGKFLLSLAMSEA  195 (299)
T ss_dssp             EECHHHHTTSC-H-----HHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred             EECCcccccCC-H-----HHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence            75421 11211 1     01248999999999999999998766544

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.21  E-value=5.8e-11  Score=113.63  Aligned_cols=100  Identities=11%  Similarity=0.080  Sum_probs=77.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+++.  +.+++|+|++..++    +++...++ |++++++|+.++     + .+++||.|++
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-----~-~~~~fD~i~~  190 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAA-----N-IQENYDFIVS  190 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGC-----C-CCSCEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccc-----c-ccCCccEEEE
Confidence            3689999999999999999998  56999999765544    44445566 899999999876     3 2688999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +.+-.|....      ....+++++.++|+|||.+++.+
T Consensus       191 ~~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          191 TVVFMFLNRE------RVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             CSSGGGSCGG------GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccchhhCCHH------HHHHHHHHHHHhcCCCcEEEEEE
Confidence            7544332111      12489999999999999988764

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.20  E-value=5.4e-11  Score=108.56  Aligned_cols=104  Identities=13%  Similarity=0.141  Sum_probs=76.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCC--CcEEEEEcChhhhhhhhhccCCCc-eeEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGI--TNGYFIATNATSTFRSIVASYPGK-LILV  303 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l--~nv~f~~~Da~~l~~~~~~~~~~s-~D~v  303 (416)
                      +.+|||+|||+|.+++.++++. ..+++|+|++..    |.++++..++  +|++++++|+.+++..   ..+++ ||.|
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~~~fD~I  129 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ---PQNQPHFDVV  129 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS---CCSSCCEEEE
T ss_pred             CCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh---hccCCCCCEE
Confidence            5789999999999999877764 358999997554    4445555677  6999999999876321   12578 9999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHH--HhhccCCcEEEEEeCcH
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAV--SDLLVHDGKVFLQSDIE  347 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i--~r~LkpgG~l~l~tD~~  347 (416)
                      +++.|  +. ..      ..+.+++.+  .++|+|||.+++.+...
T Consensus       130 ~~~~~--~~-~~------~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          130 FLDPP--FH-FN------LAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             EECCC--SS-SC------HHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             EECCC--CC-Cc------cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            98633  32 11      124677888  67899999999987543

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.20  E-value=6.5e-11  Score=110.47  Aligned_cols=106  Identities=11%  Similarity=0.082  Sum_probs=79.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-CCCcEEEEEcChhhhhhh-hhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GITNGYFIATNATSTFRS-IVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-~l~nv~f~~~Da~~l~~~-~~~~~~~s~D~v~~~f  307 (416)
                      .+.+|||||||+|.++..+|+..+  +++|+|++..+++.++++ ...|++|+++|+.++... .++ ...++|.|+++.
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~d~v~~~~  132 (245)
T 3ggd_A           56 PELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIH-SEIGDANIYMRT  132 (245)
T ss_dssp             TTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHH-HHHCSCEEEEES
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccc-cccCccEEEEcc
Confidence            357899999999999999999977  899999988877776544 345899999999886211 111 012489999886


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .-.+.....      ...++++++++|||||.+++..
T Consensus       133 ~~~~~~~~~------~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          133 GFHHIPVEK------RELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             SSTTSCGGG------HHHHHHHHHHHHTTTCEEEEEE
T ss_pred             hhhcCCHHH------HHHHHHHHHHHcCCCCEEEEEe
Confidence            555432111      2489999999999999987753

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.20  E-value=7.3e-11  Score=109.07  Aligned_cols=103  Identities=16%  Similarity=0.107  Sum_probs=76.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+.+|||+|||+|.++..+|+.. |..+++|+|++..+++.+.+  ...+|++++++|+.+.. ...+ .+++||.|++.
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~-~~~~~D~v~~~  150 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPE-EYRA-LVPKVDVIFED  150 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGG-GGTT-TCCCEEEEEEC
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcc-hhhc-ccCCceEEEEC
Confidence            36799999999999999999885 66899999987755444322  12378999999998741 1111 24689999987


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .+.|+          ....+++++.++|||||.+++..
T Consensus       151 ~~~~~----------~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          151 VAQPT----------QAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             CCSTT----------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCHh----------HHHHHHHHHHHhcCCCCEEEEEE
Confidence            65443          11256999999999999998863

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.19  E-value=3.6e-11  Score=113.21  Aligned_cols=102  Identities=14%  Similarity=0.113  Sum_probs=79.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchH----HHHHHHHHHhCCC-cEEEEEcChhhhhhhhhcc-CCCceeEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLILV  303 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~----~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~-~~~s~D~v  303 (416)
                      ..+|||||||+|..++.||+..| +.+++|+|++    ..|.++++..++. |++++++|+.+.++...+. .+++||.|
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V  140 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI  140 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence            57999999999999999999886 8899999964    4566777777875 8999999998875432100 14789999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ++..+   .  .      ....+++++.++|+|||.|++.
T Consensus       141 ~~d~~---~--~------~~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          141 FIDAD---K--T------NYLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             EEESC---G--G------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCC---h--H------HhHHHHHHHHHhcCCCeEEEEE
Confidence            88632   1  1      1247899999999999999983

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.19  E-value=7.1e-11  Score=114.98  Aligned_cols=110  Identities=16%  Similarity=0.125  Sum_probs=77.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCC------cEEEEEcCh------hhhhhhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT------NGYFIATNA------TSTFRSIV  293 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~------nv~f~~~Da------~~l~~~~~  293 (416)
                      .+.+|||||||+|..+..+++. ...+++|+|++..+++.|+    ..+..      ++.|.+.|+      .++ ++.+
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l-~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSV-REVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHH-HTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhh-hccc
Confidence            3678999999999877777664 3568999998665555443    33432      367888887      333 2222


Q ss_pred             ccCCCceeEEEEECCCCCC-CCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919          294 ASYPGKLILVSIQCPNPDF-NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  349 (416)
Q Consensus       294 ~~~~~s~D~v~~~fpdpw~-k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~  349 (416)
                        ++++||.|++.+.-.|. ...|.      ..+|++++++|||||.|++.|.+...
T Consensus       126 --~~~~FD~V~~~~~lhy~~~~~~~------~~~l~~~~r~LkpGG~~i~~~~~~~~  174 (302)
T 2vdw_A          126 --YFGKFNIIDWQFAIHYSFHPRHY------ATVMNNLSELTASGGKVLITTMDGDK  174 (302)
T ss_dssp             --CSSCEEEEEEESCGGGTCSTTTH------HHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred             --cCCCeeEEEECchHHHhCCHHHH------HHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence              46899999988754432 11221      48999999999999999998866543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.19  E-value=8e-11  Score=109.13  Aligned_cols=104  Identities=13%  Similarity=0.132  Sum_probs=77.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+++.  ..+++|+|++..+++.+    ...+. ++.++++|+.++     ++ +++||.|++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-----~~-~~~fD~v~~  107 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNL-----NI-NRKFDLITC  107 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGC-----CC-SCCEEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccC-----Cc-cCCceEEEE
Confidence            3679999999999999999988  46899999765554443    33344 899999999876     32 378999998


Q ss_pred             EC-CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919          306 QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  347 (416)
Q Consensus       306 ~f-pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~  347 (416)
                      ++ .-++.....     ....+|++++++|+|||.+++.+.+.
T Consensus       108 ~~~~l~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (246)
T 1y8c_A          108 CLDSTNYIIDSD-----DLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             CTTGGGGCCSHH-----HHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             cCccccccCCHH-----HHHHHHHHHHHhcCCCcEEEEEecCH
Confidence            75 434332111     12488999999999999999866543

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.19  E-value=2.7e-11  Score=116.14  Aligned_cols=115  Identities=7%  Similarity=0.048  Sum_probs=81.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--------CCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--------~l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      .+.+|||||||+|.++..+++.  ..+++|+|++..+++.++++        ...++.+..+|+..+..+++  .+++||
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~fD  132 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP--AGDGFD  132 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC--CTTCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccc--cCCCeE
Confidence            3679999999999999999998  44999999876666555331        23578999999988732222  578999


Q ss_pred             EEEEE-CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919          302 LVSIQ-CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  349 (416)
Q Consensus       302 ~v~~~-fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~  349 (416)
                      .|+++ ..-.+....... .-....++++++++|||||.+++.+.+.++
T Consensus       133 ~V~~~g~~l~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  180 (293)
T 3thr_A          133 AVICLGNSFAHLPDSKGD-QSEHRLALKNIASMVRPGGLLVIDHRNYDY  180 (293)
T ss_dssp             EEEECTTCGGGSCCSSSS-SHHHHHHHHHHHHTEEEEEEEEEEEECHHH
T ss_pred             EEEEcChHHhhcCccccC-HHHHHHHHHHHHHHcCCCeEEEEEeCCHHH
Confidence            99986 332222220000 001248999999999999999998766443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.19  E-value=1.2e-10  Score=108.06  Aligned_cols=100  Identities=12%  Similarity=0.163  Sum_probs=78.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      +.+|||||||+|.++..+|+..|+.+++|+|++..    |.+++...++. ++.++++|+.+.++...  .+++||.|++
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~fD~I~~  132 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE--LYPLFDVLFI  132 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT--TSCCEEEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc--cCCCccEEEE
Confidence            57999999999999999999999999999997544    44444555774 69999999987533211  2578999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ..+.+           ....+++.+.++|+|||.+++.
T Consensus       133 ~~~~~-----------~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          133 DAAKG-----------QYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             EGGGS-----------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCCHH-----------HHHHHHHHHHHHcCCCeEEEEE
Confidence            75422           1248899999999999999885

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.19  E-value=3.2e-11  Score=111.39  Aligned_cols=123  Identities=15%  Similarity=0.138  Sum_probs=81.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHH----HHHHHHHHhCCC-cEEEEEcChhhhhhhhh-ccCCCceeEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGIT-NGYFIATNATSTFRSIV-ASYPGKLILV  303 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~----~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~-~~~~~s~D~v  303 (416)
                      ..+|||||||+|.+++.+|+..+ +.+++|+|++.    .|.++++..++. +++++++|+.+.++..- ....++||.|
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V  138 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV  138 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence            57899999999999999999764 88999999754    455555566775 59999999987643211 0012689999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCC
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK  362 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~  362 (416)
                      ++..+..     +.   .....+++.+ ++|||||.|++..-...-.....+.+.+++.
T Consensus       139 ~~d~~~~-----~~---~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~  188 (221)
T 3u81_A          139 FLDHWKD-----RY---LPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSS  188 (221)
T ss_dssp             EECSCGG-----GH---HHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTT
T ss_pred             EEcCCcc-----cc---hHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCC
Confidence            8752211     11   0112567777 9999999998742111111234455556554

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.19  E-value=5.9e-11  Score=105.21  Aligned_cols=104  Identities=15%  Similarity=0.164  Sum_probs=76.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+|||+|.++..+++. +..+++|+|++..+++    +++..++. |++++++|+.+.++.    .+++||.|+
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~fD~i~  105 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC----LTGRFDLVF  105 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH----BCSCEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh----hcCCCCEEE
Confidence            3679999999999999999987 6679999997555444    44445664 799999999885331    246799998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHH--hhccCCcEEEEEeCcH
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDIE  347 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~--r~LkpgG~l~l~tD~~  347 (416)
                      ++.  |+.    .   ...+.+++.+.  ++|+|||.+++.+...
T Consensus       106 ~~~--~~~----~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A          106 LDP--PYA----K---ETIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             ECC--SSH----H---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             ECC--CCC----c---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence            863  331    1   11246677776  9999999999987543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.19  E-value=9.7e-11  Score=106.92  Aligned_cols=103  Identities=17%  Similarity=0.169  Sum_probs=75.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||+|||+|.+++.++++.. .+++|+|++..    |.++++..+++|++++++|+.+.+    +..+++||.|+++
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~----~~~~~~fD~V~~~  129 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL----AQKGTPHNIVFVD  129 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH----SSCCCCEEEEEEC
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH----hhcCCCCCEEEEC
Confidence            57899999999999998887643 48999997554    444555567789999999998853    2245789999886


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHh--hccCCcEEEEEeCcH
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSDIE  347 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r--~LkpgG~l~l~tD~~  347 (416)
                      .|  ++. .      ..+.+++.+.+  +|+|||.+++.+...
T Consensus       130 ~p--~~~-~------~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          130 PP--FRR-G------LLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             CS--SST-T------THHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             CC--CCC-C------cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            33  321 1      12367777765  599999999987543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.18  E-value=1.3e-10  Score=106.20  Aligned_cols=97  Identities=14%  Similarity=0.123  Sum_probs=75.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHH----HHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHC----RDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a----~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ..+|||||||+|.++..+|+..| +.+++++|++..+    .++++..++. +++++++|+.+.++    ..++ ||.|+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~-fD~v~  131 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA----GQRD-IDILF  131 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHT----TCCS-EEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhc----cCCC-CCEEE
Confidence            57899999999999999999988 8899999975544    4444455664 59999999987632    1246 99999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +..+.+           ..+.+++++.++|||||.+++.
T Consensus       132 ~~~~~~-----------~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          132 MDCDVF-----------NGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             EETTTS-----------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EcCChh-----------hhHHHHHHHHHhcCCCeEEEEE
Confidence            873211           1258999999999999999874

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.18  E-value=1.6e-10  Score=109.12  Aligned_cols=103  Identities=16%  Similarity=0.161  Sum_probs=78.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchH----HHHHHHHHHhCC-CcEEEEEcChhhhhhhhhcc--CCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGI-TNGYFIATNATSTFRSIVAS--YPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~----~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~--~~~s~D  301 (416)
                      ...+|||||||+|.+++.+|+..| +.+++++|++    ..|.+++++.++ ++++++++|+.+.++.....  .+++||
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  158 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  158 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence            357999999999999999999987 7899999964    455555666677 47999999998865432100  157899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .|++.   .+.  .      ..+.+++.+.++|||||.+++.
T Consensus       159 ~V~~d---~~~--~------~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          159 FIFVD---ADK--D------NYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             EEEEC---SCS--T------THHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEEEc---Cch--H------HHHHHHHHHHHhCCCCeEEEEe
Confidence            99875   221  1      1258899999999999999874

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.18  E-value=8e-11  Score=115.32  Aligned_cols=123  Identities=14%  Similarity=0.094  Sum_probs=85.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh------C--CCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------G--ITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~------~--l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      +..+|||||||+|..+..+++..|..+++++|++..+++.++++      +  .++++++.+|+.+.++.    .+++||
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~----~~~~fD  183 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN----HKNEFD  183 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH----CTTCEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh----cCCCce
Confidence            45799999999999999999987889999999876666655432      2  25799999999886432    367899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhC
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  360 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~  360 (416)
                      .|+++.++|+...    .++...++++.+.++|+|||.+++.+..    ......+.+.+++.
T Consensus       184 ~Ii~d~~~~~~~~----~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~v  242 (314)
T 2b2c_A          184 VIITDSSDPVGPA----ESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI  242 (314)
T ss_dssp             EEEECCC-----------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCcc----hhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHH
Confidence            9999887776321    1234468999999999999999997532    23344455555543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.18  E-value=7.7e-11  Score=113.51  Aligned_cols=106  Identities=12%  Similarity=0.059  Sum_probs=73.5

Q ss_pred             CCeEEEEeccccHHHH----HHHHhCCCCeE--EEEchHHHHHHHHHH-----hCCCcEEE--EEcChhhhhhhh-hccC
Q 014919          231 QPLVVDIGSGNGLFLL----GMARKRKDLNF--LGLELVTHCRDSLQL-----SGITNGYF--IATNATSTFRSI-VASY  296 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~----~lA~~~p~~~~--iGvD~~~~a~~~a~~-----~~l~nv~f--~~~Da~~l~~~~-~~~~  296 (416)
                      +.+|||||||+|.++.    .++.++|+..+  +|+|.+..+++.+++     .+++|+.+  .++++.++...+ .+++
T Consensus        53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE  132 (292)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence            5689999999997654    44556788854  999976665554432     25667655  466666542111 0124


Q ss_pred             CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       297 ~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +++||.|++++.-.|..+.        ..+|++++|+|||||.+.+..
T Consensus       133 ~~~fD~V~~~~~l~~~~d~--------~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          133 LQKWDFIHMIQMLYYVKDI--------PATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             CCCEEEEEEESCGGGCSCH--------HHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCceeEEEEeeeeeecCCH--------HHHHHHHHHHcCCCcEEEEEE
Confidence            7899999998766654332        378999999999999999863

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.17  E-value=1.8e-10  Score=110.21  Aligned_cols=100  Identities=16%  Similarity=0.193  Sum_probs=75.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+++.++ .+++|+|++..+++.+    ...++ .++.++++|+.++        +++||.|+
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--------~~~fD~v~  134 (287)
T 1kpg_A           64 PGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--------DEPVDRIV  134 (287)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC--------CCCCSEEE
T ss_pred             CcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC--------CCCeeEEE
Confidence            467999999999999999997764 5999999865554443    33455 4899999998765        27899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +...-.+....      ....+++++.++|||||.+++.+
T Consensus       135 ~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          135 SIGAFEHFGHE------RYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             EESCGGGTCTT------THHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EeCchhhcChH------HHHHHHHHHHHhcCCCCEEEEEE
Confidence            87433222111      12488999999999999999864

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.17  E-value=4e-11  Score=113.26  Aligned_cols=100  Identities=14%  Similarity=0.152  Sum_probs=78.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC-C
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC-P  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f-p  308 (416)
                      .+.+|||||||+|.++..+++..  .+++|+|++..+++.+++. ..++.++++|+.++     +. +++||.|++.+ .
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~-~~~~~~~~~d~~~~-----~~-~~~fD~v~~~~~~  120 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRR-NPDAVLHHGDMRDF-----SL-GRRFSAVTCMFSS  120 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHH-CTTSEEEECCTTTC-----CC-SCCEEEEEECTTG
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhh-CCCCEEEECChHHC-----Cc-cCCcCEEEEcCch
Confidence            35899999999999999999884  4899999988888777654 34899999999886     32 68999999875 4


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      -.|.....     ....++++++++|||||.|++.
T Consensus       121 l~~~~~~~-----~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          121 IGHLAGQA-----ELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             GGGSCHHH-----HHHHHHHHHHHTEEEEEEEEEC
T ss_pred             hhhcCCHH-----HHHHHHHHHHHhcCCCcEEEEE
Confidence            33321111     1247899999999999999995

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.17  E-value=3.3e-11  Score=109.37  Aligned_cols=101  Identities=11%  Similarity=0.073  Sum_probs=73.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||+|||+|.++..++.. ++.+++|+|++..+++.+    ...+ .|++++++|+.++     ++++++||.|+++
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~-----~~~~~~fD~v~~~   96 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKL-----PFKDESMSFVYSY   96 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSC-----CSCTTCEEEEEEC
T ss_pred             CCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhC-----CCCCCceeEEEEc
Confidence            689999999999985555443 567999999766555443    3334 5799999999876     3357899999986


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .+-.+.. .     -....++++++++|||||.+++.+
T Consensus        97 ~~l~~~~-~-----~~~~~~l~~~~~~LkpgG~l~~~~  128 (209)
T 2p8j_A           97 GTIFHMR-K-----NDVKEAIDEIKRVLKPGGLACINF  128 (209)
T ss_dssp             SCGGGSC-H-----HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ChHHhCC-H-----HHHHHHHHHHHHHcCCCcEEEEEE
Confidence            4322211 0     112488999999999999999864

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.16  E-value=2.3e-10  Score=107.25  Aligned_cols=122  Identities=12%  Similarity=0.105  Sum_probs=84.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+|||+|.++..+|+. .|..+++|+|++..++    +.+++  ..|+.++++|+... ..... ..++||.|+
T Consensus        76 ~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~--r~nv~~i~~Da~~~-~~~~~-~~~~~D~I~  151 (232)
T 3id6_C           76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR--RPNIFPLLADARFP-QSYKS-VVENVDVLY  151 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH--CTTEEEEECCTTCG-GGTTT-TCCCEEEEE
T ss_pred             CCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--cCCeEEEEcccccc-hhhhc-cccceEEEE
Confidence            4789999999999999999987 4688999999876553    33322  37999999999864 21101 246899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC---------cHHHHHHHHHHHHhCCCCce
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD---------IEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD---------~~~~~~~~~~~~~~~~~~~~  365 (416)
                      ++.+.|+.          ...++..+.+.|||||+|++..-         .++.++...+.+++++|...
T Consensus       152 ~d~a~~~~----------~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~  211 (232)
T 3id6_C          152 VDIAQPDQ----------TDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETI  211 (232)
T ss_dssp             ECCCCTTH----------HHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEE
T ss_pred             ecCCChhH----------HHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEE
Confidence            98765531          11345566779999999998621         11223445566777776543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.16  E-value=9.6e-11  Score=105.97  Aligned_cols=96  Identities=11%  Similarity=0.022  Sum_probs=74.3

Q ss_pred             eEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      +|||||||+|.++..+++.  ..+++|+|++..+++.+    ...+. ++.++++|+.++     ++++++||.|++.+.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-----~~~~~~fD~v~~~~~  103 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADF-----DIVADAWEGIVSIFC  103 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTB-----SCCTTTCSEEEEECC
T ss_pred             CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhc-----CCCcCCccEEEEEhh
Confidence            9999999999999999987  56999999766555444    33354 899999999876     335689999998753


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                       .+    +.   -....+++++.++|+|||.+++.+
T Consensus       104 -~~----~~---~~~~~~l~~~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A          104 -HL----PS---SLRQQLYPKVYQGLKPGGVFILEG  131 (202)
T ss_dssp             -CC----CH---HHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred             -cC----CH---HHHHHHHHHHHHhcCCCcEEEEEE
Confidence             11    10   012488999999999999999975

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.16  E-value=1.4e-10  Score=110.96  Aligned_cols=109  Identities=14%  Similarity=0.110  Sum_probs=80.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCC-CcEEEEEcChhhhhhhhhcc-CCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVAS-YPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l-~nv~f~~~Da~~l~~~~~~~-~~~s~D~v  303 (416)
                      .+.+|||||||+|.++..+++. +..+++|+|++..+++.++    ..++ .|+.++++|+.++     ++ .+++||.|
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~~fD~v  137 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR-----HMDLGKEFDVI  137 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS-----CCCCSSCEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc-----ccCCCCCcCEE
Confidence            4689999999999999998886 5569999998665554443    3344 4799999999876     33 46789999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  348 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~  348 (416)
                      ++.+.-.+. ..|..   ....+++++.++|||||.+++.+.+..
T Consensus       138 ~~~~~l~~~-~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~  178 (298)
T 1ri5_A          138 SSQFSFHYA-FSTSE---SLDIAQRNIARHLRPGGYFIMTVPSRD  178 (298)
T ss_dssp             EEESCGGGG-GSSHH---HHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             EECchhhhh-cCCHH---HHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            988543220 01111   124899999999999999999876543

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.15  E-value=1.1e-10  Score=113.40  Aligned_cols=113  Identities=14%  Similarity=0.068  Sum_probs=81.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----h-------CCCcEEEEEcChhhhh-hhhhccCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----S-------GITNGYFIATNATSTF-RSIVASYP  297 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~-------~l~nv~f~~~Da~~l~-~~~~~~~~  297 (416)
                      ...+|||||||+|.++..+++. +..+++|+|++..+++.+++    .       +..+++++++|+..+. ...++.++
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            3579999999999999999984 67899999986655554432    2       4458999999998761 01122124


Q ss_pred             CceeEEEEECCCCCC-CCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH
Q 014919          298 GKLILVSIQCPNPDF-NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  348 (416)
Q Consensus       298 ~s~D~v~~~fpdpw~-k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~  348 (416)
                      ++||.|++++.-.|. ....     ....++++++++|||||.+++.+...+
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~-----~~~~~l~~~~~~LkpgG~li~~~~~~~  159 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYE-----QADMMLRNACERLSPGGYFIGTTPNSF  159 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHH-----HHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred             CCEEEEEEecchhhccCCHH-----HHHHHHHHHHHHhCCCcEEEEecCChH
Confidence            589999998766653 1111     124899999999999999999876543

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.15  E-value=1.4e-10  Score=113.53  Aligned_cols=110  Identities=16%  Similarity=0.217  Sum_probs=80.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+|||+|..+..+|+..+ ..+++|+|++..    +.+++++.++.|++++++|+..+..     .+++||.|+
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~-----~~~~fD~Il  192 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE-----LNVEFDKIL  192 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG-----GCCCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc-----ccccCCEEE
Confidence            367999999999999999999864 589999997544    4555566788899999999988621     256899999


Q ss_pred             EECCCC----CCCCcchhh----------hhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNP----DFNRPEHRW----------RMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdp----w~k~~h~kr----------Rl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ++.|-.    +.+.+..++          .-.+..+|+++.++|||||++++.|
T Consensus       193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st  246 (315)
T 1ixk_A          193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  246 (315)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            874311    111110000          1124689999999999999999975

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.15  E-value=3.2e-10  Score=108.54  Aligned_cols=114  Identities=14%  Similarity=0.184  Sum_probs=81.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC-CeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+|||+|..+..+|+..++ .+++|+|++..    +.+++++.+++|+.++++|+..+.. .++..+++||.|+
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~-~~~~~~~~fD~Vl  161 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKD-YLLKNEIFFDKIL  161 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHH-HHHHTTCCEEEEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcch-hhhhccccCCEEE
Confidence            3679999999999999999998776 89999997544    4455556788899999999988722 1110256899999


Q ss_pred             EECCCCCCCC--cch--------hhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNR--PEH--------RWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~--~h~--------krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +..|-.....  ++.        ...-.+..+++.+.+.|||||++++.|
T Consensus       162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            8733211000  000        000134689999999999999999976

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.15  E-value=9.6e-11  Score=113.06  Aligned_cols=119  Identities=12%  Similarity=0.150  Sum_probs=85.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCc-EEEEEcChhhhhhhhhccCCCce---eE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITN-GYFIATNATSTFRSIVASYPGKL---IL  302 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~---D~  302 (416)
                      +.+|||+|||+|.+++.+|+. |+.+++|+|++..++    ++++.+++.| ++|+++|+.+.+       +++|   |.
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~-------~~~f~~~D~  195 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-------KEKFASIEM  195 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG-------GGGTTTCCE
T ss_pred             CCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc-------ccccCCCCE
Confidence            578999999999999999999 999999999865554    4455567775 999999998742       2467   99


Q ss_pred             EEEECCCCCCCCc--------chhhh-hh----hHHHHHHHH-hhccCCcEEEEEeCcHHHHHHHHHHHHhC
Q 014919          303 VSIQCPNPDFNRP--------EHRWR-MV----QRSLVEAVS-DLLVHDGKVFLQSDIEEVMLRMKQQFLEY  360 (416)
Q Consensus       303 v~~~fpdpw~k~~--------h~krR-l~----~~~~l~~i~-r~LkpgG~l~l~tD~~~~~~~~~~~~~~~  360 (416)
                      |++|  .|+....        |..+. +.    ...+++++. +.|+|||.+++.+... ..+.+.+.+.+.
T Consensus       196 Ivsn--PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~-q~~~v~~~~~~~  264 (284)
T 1nv8_A          196 ILSN--PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED-QVEELKKIVSDT  264 (284)
T ss_dssp             EEEC--CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT-CHHHHTTTSTTC
T ss_pred             EEEc--CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch-HHHHHHHHHHhC
Confidence            9998  4443221        11000 00    016899999 9999999999987653 455555555443

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.15  E-value=1.6e-10  Score=114.70  Aligned_cols=101  Identities=16%  Similarity=0.210  Sum_probs=77.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchH---HHHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~---~~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||||||+|.++..+|++ +..+++|+|++   ..|.++++.+++.+ ++++++|+.++     ++++++||.|++.
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~Iis~  140 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-----ELPVEKVDIIISE  140 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-----CCSSSCEEEEEEC
T ss_pred             CCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHc-----cCCCCceEEEEEc
Confidence            689999999999999999987 66799999975   45566666677765 99999999887     3356899999986


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      ....+....     -..+.+++++.++|||||.++.
T Consensus       141 ~~~~~l~~~-----~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          141 WMGYCLFYE-----SMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             CCBBTBTBT-----CCHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccccCc-----hhHHHHHHHHHHhCCCCCEEcc
Confidence            432221000     0125789999999999999753

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.15  E-value=8.9e-11  Score=110.98  Aligned_cols=101  Identities=16%  Similarity=0.199  Sum_probs=78.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC-
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP-  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp-  308 (416)
                      .+.+|||||||+|.++..+++.  ..+++|+|++..+++.+++....+  ++++|+.++     ++++++||.|++..+ 
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~~~d~~~~-----~~~~~~fD~v~~~~~~  124 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKN--VVEAKAEDL-----PFPSGAFEAVLALGDV  124 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSC--EEECCTTSC-----CSCTTCEEEEEECSSH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCC--EEECcHHHC-----CCCCCCEEEEEEcchh
Confidence            3679999999999999999987  569999999888887776654444  889998876     335789999987532 


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  347 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~  347 (416)
                      ..|..+        ...+++++.++|||||.+++.+.+.
T Consensus       125 ~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          125 LSYVEN--------KDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             HHHCSC--------HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             hhcccc--------HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence            111111        2488999999999999999987664

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.14  E-value=1.1e-10  Score=107.28  Aligned_cols=92  Identities=13%  Similarity=0.159  Sum_probs=74.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      +.+|||||||+|.++..+++.      +|+|++..+++.+++.   +++++++|+..+     ++++++||.|++...-.
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~---~~~~~~~d~~~~-----~~~~~~fD~v~~~~~l~  113 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR---GVFVLKGTAENL-----PLKDESFDFALMVTTIC  113 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT---TCEEEECBTTBC-----CSCTTCEEEEEEESCGG
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc---CCEEEEcccccC-----CCCCCCeeEEEEcchHh
Confidence            578999999999999988765      9999988888877665   789999998775     33567999999885433


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +..+        ...+++++.++|+|||.+++.+
T Consensus       114 ~~~~--------~~~~l~~~~~~L~pgG~l~i~~  139 (219)
T 1vlm_A          114 FVDD--------PERALKEAYRILKKGGYLIVGI  139 (219)
T ss_dssp             GSSC--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccC--------HHHHHHHHHHHcCCCcEEEEEE
Confidence            3211        1489999999999999999874

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.14  E-value=2.7e-10  Score=110.76  Aligned_cols=100  Identities=15%  Similarity=0.171  Sum_probs=76.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+++.+ +.+++|+|++..+++.+    ...++. ++.++++|+.++        +++||.|+
T Consensus        90 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~~~fD~v~  160 (318)
T 2fk8_A           90 PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--------AEPVDRIV  160 (318)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--------CCCCSEEE
T ss_pred             CcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC--------CCCcCEEE
Confidence            46799999999999999999986 56999999865554443    344654 699999998765        37899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +...-.+....      ....+++++.++|||||.+++.+
T Consensus       161 ~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          161 SIEAFEHFGHE------NYDDFFKRCFNIMPADGRMTVQS  194 (318)
T ss_dssp             EESCGGGTCGG------GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EeChHHhcCHH------HHHHHHHHHHHhcCCCcEEEEEE
Confidence            87543322111      12489999999999999999864

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.14  E-value=2.6e-10  Score=103.90  Aligned_cols=96  Identities=17%  Similarity=0.179  Sum_probs=75.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+++.  ..+++|+|++..    |.+++...+++|++++++|+.+...     .+++||.|++
T Consensus        77 ~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~D~i~~  149 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ-----ARAPFDAIIV  149 (210)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----GGCCEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc-----cCCCccEEEE
Confidence            4689999999999999999998  679999997554    4444555678899999999987521     3578999999


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      +.+.++..              +.+.+.|||||++++....
T Consensus       150 ~~~~~~~~--------------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          150 TAAPPEIP--------------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             SSBCSSCC--------------THHHHTEEEEEEEEEEECS
T ss_pred             ccchhhhh--------------HHHHHhcccCcEEEEEEcC
Confidence            75544421              2578999999999997654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.14  E-value=6.3e-11  Score=119.20  Aligned_cols=101  Identities=17%  Similarity=0.178  Sum_probs=72.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH-----------HHHhCC--CcEEEEEcChhhhhhhhhccC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS-----------LQLSGI--TNGYFIATNATSTFRSIVASY  296 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~-----------a~~~~l--~nv~f~~~Da~~l~~~~~~~~  296 (416)
                      .+.+|||||||+|..++.+|...+..+++|||++..+.+.           ++..++  .++.|+++|+.++ +  ++..
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l-p--~~d~  249 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE-E--WRER  249 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH-H--HHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC-c--cccc
Confidence            4789999999999999999998876679999975433222           233455  6899999999886 2  1100


Q ss_pred             CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       297 ~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      -.++|+|++|.+  ++. ..      ....|.+++++|||||+|++
T Consensus       250 ~~~aDVVf~Nn~--~F~-pd------l~~aL~Ei~RvLKPGGrIVs  286 (438)
T 3uwp_A          250 IANTSVIFVNNF--AFG-PE------VDHQLKERFANMKEGGRIVS  286 (438)
T ss_dssp             HHTCSEEEECCT--TCC-HH------HHHHHHHHHTTSCTTCEEEE
T ss_pred             cCCccEEEEccc--ccC-ch------HHHHHHHHHHcCCCCcEEEE
Confidence            146899998733  221 11      12567889999999999987

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.14  E-value=4.9e-10  Score=112.42  Aligned_cols=130  Identities=15%  Similarity=0.098  Sum_probs=89.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +..|||+|||+|.+++.+|+.  ..+++|+|++..+    .++++.++++|++|+++|+.++++... ..+.+||.|+++
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~-~~~~~fD~Ii~d  286 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLE-KEGERFDLVVLD  286 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHH-HTTCCEEEEEEC
T ss_pred             CCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHH-hcCCCeeEEEEC
Confidence            578999999999999999998  5789999975544    455556788899999999988754221 125689999885


Q ss_pred             CCCCCCCCcchhhhh--hhHHHHHHHHhhccCCcEEEEEeCcH----H-HHHHHHHHHHhCCCCc
Q 014919          307 CPNPDFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQSDIE----E-VMLRMKQQFLEYGKGK  364 (416)
Q Consensus       307 fpdpw~k~~h~krRl--~~~~~l~~i~r~LkpgG~l~l~tD~~----~-~~~~~~~~~~~~~~~~  364 (416)
                      -| -|.+......+.  ....++..+.++|+|||.+++.+...    + +.+.+.+.+.+.+...
T Consensus       287 pP-~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~  350 (382)
T 1wxx_A          287 PP-AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLL  350 (382)
T ss_dssp             CC-CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             CC-CCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            22 122211111111  23578999999999999999986542    2 2333334666666543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.13  E-value=3.5e-10  Score=105.58  Aligned_cols=103  Identities=16%  Similarity=0.179  Sum_probs=77.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHH----HHHHHHHhCCCc-EEEEEcChhhhhhhhhc----------
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGITN-GYFIATNATSTFRSIVA----------  294 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~----a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~----------  294 (416)
                      +.+|||||||+|.++..+|+..| ..+++++|++..    |.++++..++.| ++++++|+.+.++....          
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  140 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD  140 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence            67999999999999999999987 789999997544    444455567765 99999999875432210          


Q ss_pred             cCC--CceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          295 SYP--GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       295 ~~~--~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +++  ++||.|++.+..+           ..+.+++.+.+.|+|||.+++.+
T Consensus       141 f~~~~~~fD~I~~~~~~~-----------~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          141 FAFGPSSIDLFFLDADKE-----------NYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             TCCSTTCEEEEEECSCGG-----------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCCCCCcCEEEEeCCHH-----------HHHHHHHHHHHHcCCCeEEEEEc
Confidence            122  7899998863211           12488999999999999999853

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.13  E-value=3.1e-10  Score=104.77  Aligned_cols=102  Identities=17%  Similarity=0.108  Sum_probs=77.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchH----HHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCC--Ccee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYP--GKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~----~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~--~s~D  301 (416)
                      .+.+|||||||+|.++..+|+..| +.+++++|++    ..|.++++..++ .+++++++|+.+.++.... ..  ++||
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~-~~~~~~~D  147 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLA-AGEAGTFD  147 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHH-TTCTTCEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHh-cCCCCCcc
Confidence            357999999999999999999887 7899999964    445555556676 5899999999876443211 11  6899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .|++.   ++.  .      ....+++++.+.|+|||.+++.
T Consensus       148 ~v~~d---~~~--~------~~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          148 VAVVD---ADK--E------NCSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             EEEEC---SCS--T------THHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEC---CCH--H------HHHHHHHHHHHHcCCCeEEEEE
Confidence            99885   321  1      1248899999999999999883

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.13  E-value=1.1e-10  Score=108.00  Aligned_cols=101  Identities=15%  Similarity=0.160  Sum_probs=78.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC-C
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC-P  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f-p  308 (416)
                      .+.+|||||||+|.++..+++..+  +++|+|++..+++.+++. .++++++++|+.++     +. +++||.|++.+ .
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~-~~~~~~~~~d~~~~-----~~-~~~~D~v~~~~~~  110 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKR-LPDATLHQGDMRDF-----RL-GRKFSAVVSMFSS  110 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHH-CTTCEEEECCTTTC-----CC-SSCEEEEEECTTG
T ss_pred             CCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHh-CCCCEEEECCHHHc-----cc-CCCCcEEEEcCch
Confidence            468999999999999999999876  899999988887776654 46799999999876     32 67899998543 2


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      -.+.....     ....++++++++|+|||.+++.+
T Consensus       111 ~~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          111 VGYLKTTE-----ELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             GGGCCSHH-----HHHHHHHHHHHTEEEEEEEEECC
T ss_pred             HhhcCCHH-----HHHHHHHHHHHhcCCCeEEEEEe
Confidence            22211111     12488999999999999999864

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.13  E-value=3.6e-10  Score=105.87  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=78.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHH----HHHHHHHHhCCC-cEEEEEcChhhhhhhhhcc--CCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGIT-NGYFIATNATSTFRSIVAS--YPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~----~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~--~~~s~D  301 (416)
                      ...+|||||||+|..++.+|+..| +.+++++|++.    .|.+++++.++. +++++++|+.+.++.....  .+++||
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  149 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD  149 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence            367999999999999999999987 79999999744    455555566775 5999999998865432110  147899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .|++.   .|.  .      ..+.+++.+.+.|+|||.+++.
T Consensus       150 ~I~~d---~~~--~------~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          150 FGFVD---ADK--P------NYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             EEEEC---SCG--G------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEC---Cch--H------HHHHHHHHHHHhcCCCeEEEEe
Confidence            99874   331  1      1358999999999999999884

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.13  E-value=1.2e-10  Score=125.29  Aligned_cols=108  Identities=11%  Similarity=0.086  Sum_probs=83.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHH----------hCCCcEEEEEcChhhhhhhhhccCCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQL----------SGITNGYFIATNATSTFRSIVASYPG  298 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~----------~~l~nv~f~~~Da~~l~~~~~~~~~~  298 (416)
                      .+.+|||||||+|.++..||+.. |..+++|+|++..+++.+++          .++.|++|+++|+.++     +..++
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL-----p~~d~  795 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF-----DSRLH  795 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC-----CTTSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC-----CcccC
Confidence            46899999999999999999987 56799999987666555533          2567999999999886     33578


Q ss_pred             ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919          299 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  349 (416)
Q Consensus       299 s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~  349 (416)
                      +||.|++...-.|....      ....+++++.++|||| .+++.+.+.++
T Consensus       796 sFDlVV~~eVLeHL~dp------~l~~~L~eI~RvLKPG-~LIISTPN~ey  839 (950)
T 3htx_A          796 DVDIGTCLEVIEHMEED------QACEFGEKVLSLFHPK-LLIVSTPNYEF  839 (950)
T ss_dssp             SCCEEEEESCGGGSCHH------HHHHHHHHHHHTTCCS-EEEEEECBGGG
T ss_pred             CeeEEEEeCchhhCChH------HHHHHHHHHHHHcCCC-EEEEEecCchh
Confidence            99999987544332211      1136899999999999 88888877655

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.13  E-value=2.1e-10  Score=114.20  Aligned_cols=104  Identities=15%  Similarity=0.102  Sum_probs=76.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ...+|||||||+|.++..+++++|+.+++++|+   +..|.+++.+.++ ++++|+.+|+.+. +..+   ++++|.|++
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~---p~~~D~v~~  254 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDR-DVPF---PTGFDAVWM  254 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSS-SCCC---CCCCSEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEcccccc-CCCC---CCCcCEEEE
Confidence            468999999999999999999999999999996   2334444444455 4799999998763 0012   368999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ...-......      ....+|++++++|||||+|++.
T Consensus       255 ~~vlh~~~~~------~~~~~l~~~~~~L~pgG~l~i~  286 (363)
T 3dp7_A          255 SQFLDCFSEE------EVISILTRVAQSIGKDSKVYIM  286 (363)
T ss_dssp             ESCSTTSCHH------HHHHHHHHHHHHCCTTCEEEEE
T ss_pred             echhhhCCHH------HHHHHHHHHHHhcCCCcEEEEE
Confidence            7543211111      1137899999999999999885

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.13  E-value=2.5e-10  Score=106.87  Aligned_cols=103  Identities=17%  Similarity=0.213  Sum_probs=76.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+++.  +.+++|+|++..+++.+    ...+. ++.++++|+.++     + .++++|.|++
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~-----~-~~~~fD~v~~  111 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEI-----A-FKNEFDAVTM  111 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGC-----C-CCSCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhc-----c-cCCCccEEEE
Confidence            3579999999999999999987  67999999765554443    33444 799999999876     2 2468999987


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      .+....+-..     -....++++++++|+|||.+++.+.+
T Consensus       112 ~~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          112 FFSTIMYFDE-----EDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             CSSGGGGSCH-----HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCCchhcCCH-----HHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            6543221111     11248899999999999999986543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.12  E-value=6.4e-10  Score=104.60  Aligned_cols=110  Identities=10%  Similarity=0.128  Sum_probs=69.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCc-EEEEEcChhhhhhhhhccC-CCceeEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITN-GYFIATNATSTFRSIVASY-PGKLILVS  304 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~-~~s~D~v~  304 (416)
                      +.+|||+|||+|.++..+|++.|+.+++|+|++..    |.++++.+++++ ++++++|+.+.+.+.++.. +++||.|+
T Consensus        66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~  145 (254)
T 2h00_A           66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM  145 (254)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred             CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEE
Confidence            57899999999999999999988899999997554    444555567765 9999999876211122101 26899999


Q ss_pred             EECCCCCCCCc---ch------hhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          305 IQCPNPDFNRP---EH------RWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       305 ~~fpdpw~k~~---h~------krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      ++.  |++...   +.      ++......++.+++++|||||.+.+
T Consensus       146 ~np--p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~  190 (254)
T 2h00_A          146 CNP--PFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF  190 (254)
T ss_dssp             ECC--CCC-------------------------CTTTTHHHHTHHHH
T ss_pred             ECC--CCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence            873  443221   10      0001112456667777777776655

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.11  E-value=3.1e-10  Score=105.25  Aligned_cols=104  Identities=17%  Similarity=0.253  Sum_probs=77.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||||||+|.++..+++.   .+++|+|++..+++.++    ..+ .+++++++|+.++     + .+++||.|++.
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~-----~-~~~~fD~v~~~  103 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMREL-----E-LPEPVDAITIL  103 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGC-----C-CSSCEEEEEEC
T ss_pred             CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhc-----C-CCCCcCEEEEe
Confidence            579999999999999999887   69999998665555443    333 5799999999876     3 24789999886


Q ss_pred             C-CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919          307 C-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  349 (416)
Q Consensus       307 f-pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~  349 (416)
                      + +-.+.....     ....+++++.++|+|||.+++.+.....
T Consensus       104 ~~~~~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~~~  142 (243)
T 3d2l_A          104 CDSLNYLQTEA-----DVKQTFDSAARLLTDGGKLLFDVHSPYK  142 (243)
T ss_dssp             TTGGGGCCSHH-----HHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred             CCchhhcCCHH-----HHHHHHHHHHHhcCCCeEEEEEcCCHHH
Confidence            4 222221111     1247899999999999999997765543

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.10  E-value=4.6e-10  Score=111.58  Aligned_cols=102  Identities=18%  Similarity=0.223  Sum_probs=76.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ...+|||||||+|.++..+++.+|+.+++++|+   +..|.+++...++. +++|+++|+.+.    +   +..+|.|++
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~---~~~~D~v~~  254 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKP----L---PVTADVVLL  254 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC----C---SCCEEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCc----C---CCCCCEEEE
Confidence            468999999999999999999999999999997   33344444455665 899999998652    2   234999988


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ...-.++.+.      ....++++++++|+|||++++..
T Consensus       255 ~~vl~~~~~~------~~~~~l~~~~~~L~pgG~l~i~e  287 (374)
T 1qzz_A          255 SFVLLNWSDE------DALTILRGCVRALEPGGRLLVLD  287 (374)
T ss_dssp             ESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eccccCCCHH------HHHHHHHHHHHhcCCCcEEEEEe
Confidence            7532211111      11378999999999999988753

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.10  E-value=4.9e-10  Score=112.57  Aligned_cols=117  Identities=17%  Similarity=0.204  Sum_probs=83.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|||+|.++..+++.  +.+++|+|++..+++    ++..++++ ++++++|+.+..     ..+++||.|++
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~-----~~~~~fD~Ii~  304 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEAL-----TEEARFDIIVT  304 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTS-----CTTCCEEEEEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhcc-----ccCCCeEEEEE
Confidence            3579999999999999999998  569999997655544    44445544 899999998762     13579999999


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH-HHHHHHHHHH
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-EVMLRMKQQF  357 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~-~~~~~~~~~~  357 (416)
                      +.|-.+......   -....+++++.++|||||.+++.+... .|...+.+.+
T Consensus       305 npp~~~~~~~~~---~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f  354 (381)
T 3dmg_A          305 NPPFHVGGAVIL---DVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKF  354 (381)
T ss_dssp             CCCCCTTCSSCC---HHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCchhhcccccH---HHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhh
Confidence            844332111100   123589999999999999999986533 4444444444

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.10  E-value=1.6e-09  Score=98.38  Aligned_cols=118  Identities=14%  Similarity=0.084  Sum_probs=85.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..|||+|||+|.++..+++.. ..+++|+|++..+++.++    ..++ |++++++|+.++        +++||.|++
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~--------~~~~D~v~~  118 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF--------NSRVDIVIM  118 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC--------CCCCSEEEE
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHc--------CCCCCEEEE
Confidence            36799999999999999999873 348999998766655544    3455 899999999875        248999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      +.|  ++..++    -....+++++.+.|  |+.+.+.++.....+...+.+.+.++...
T Consensus       119 ~~p--~~~~~~----~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  170 (207)
T 1wy7_A          119 NPP--FGSQRK----HADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVT  170 (207)
T ss_dssp             CCC--CSSSST----TTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEE
T ss_pred             cCC--CccccC----CchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEE
Confidence            844  322221    12347889999998  55555444566667777888888886543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.10  E-value=3.5e-10  Score=107.22  Aligned_cols=104  Identities=11%  Similarity=0.087  Sum_probs=74.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHH----------HHHHHHHHhCC-CcEEEEEcC-hhhhhhhhhccC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVT----------HCRDSLQLSGI-TNGYFIATN-ATSTFRSIVASY  296 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~----------~a~~~a~~~~l-~nv~f~~~D-a~~l~~~~~~~~  296 (416)
                      .+.+|||||||+|.++..+++++ |+.+++|+|++.          .|.+++...++ +|++++++| ....   .+|++
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~  119 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD---LGPIA  119 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC---CGGGT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc---cCCCC
Confidence            46899999999999999999996 778999999754          34444545555 589999998 2211   11335


Q ss_pred             CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       297 ~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +++||.|+++.+-.+....        ..+++.+.++++|||.+++.+
T Consensus       120 ~~~fD~v~~~~~l~~~~~~--------~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          120 DQHFDRVVLAHSLWYFASA--------NALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             TCCCSEEEEESCGGGSSCH--------HHHHHHHHHHTTTCSEEEEEE
T ss_pred             CCCEEEEEEccchhhCCCH--------HHHHHHHHHHhCCCCEEEEEE
Confidence            7899999987543322111        256777777777899999863

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.10  E-value=4.8e-10  Score=104.50  Aligned_cols=101  Identities=18%  Similarity=0.170  Sum_probs=77.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccCC--CceeE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYP--GKLIL  302 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~--~s~D~  302 (416)
                      +.+|||||||+|.++..+|+..| +.+++++|++..    |.++++..++. +++++++|+.+.++.. +..+  ++||.
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l-~~~~~~~~fD~  151 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQL-TQGKPLPEFDL  151 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH-HTSSSCCCEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH-HhcCCCCCcCE
Confidence            57999999999999999999987 789999997554    44444556775 6999999998764432 2123  78999


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      |++..+.     .      ..+.+++++.++|+|||.+++.
T Consensus       152 V~~d~~~-----~------~~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          152 IFIDADK-----R------NYPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             EEECSCG-----G------GHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEECCCH-----H------HHHHHHHHHHHHcCCCeEEEEe
Confidence            9875321     1      1258899999999999999984

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.10  E-value=3.8e-10  Score=110.64  Aligned_cols=102  Identities=16%  Similarity=0.179  Sum_probs=76.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      +..+|||||||+|.++..+++++|+.+++++|+   +..|.+++.+.++ ++++|+.+|+.+-    +  +. ++|.|++
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--p~-~~D~v~~  241 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDP----L--PA-GAGGYVL  241 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC----C--CC-SCSEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCC----C--CC-CCcEEEE
Confidence            357999999999999999999999999999996   3344444445565 5799999998632    2  23 8999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ...-.++.+.      ....+|++++++|+|||++++..
T Consensus       242 ~~vlh~~~~~------~~~~~l~~~~~~L~pgG~l~i~e  274 (332)
T 3i53_A          242 SAVLHDWDDL------SAVAILRRCAEAAGSGGVVLVIE  274 (332)
T ss_dssp             ESCGGGSCHH------HHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             ehhhccCCHH------HHHHHHHHHHHhcCCCCEEEEEe
Confidence            7433211111      12478999999999999999853

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.09  E-value=2.7e-10  Score=104.29  Aligned_cols=105  Identities=11%  Similarity=0.112  Sum_probs=79.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+.+|||||||+|.++..+++. + .+++|+|++..+++.+++..   .+++++|+.+. ..  ++++++||.|+++..-
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~---~~~~~~d~~~~-~~--~~~~~~fD~v~~~~~l  103 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL---DHVVLGDIETM-DM--PYEEEQFDCVIFGDVL  103 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS---SEEEESCTTTC-CC--CSCTTCEEEEEEESCG
T ss_pred             CCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC---CcEEEcchhhc-CC--CCCCCccCEEEECChh
Confidence            4689999999999999999988 4 89999999888877765432   37889998764 11  3356899999987443


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHH
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM  350 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~  350 (416)
                      .+..+.        ..+++++.++|+|||.+++.+.+....
T Consensus       104 ~~~~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~~~  136 (230)
T 3cc8_A          104 EHLFDP--------WAVIEKVKPYIKQNGVILASIPNVSHI  136 (230)
T ss_dssp             GGSSCH--------HHHHHHTGGGEEEEEEEEEEEECTTSH
T ss_pred             hhcCCH--------HHHHHHHHHHcCCCCEEEEEeCCcchH
Confidence            322111        388999999999999999987554433

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.09  E-value=7.7e-11  Score=110.86  Aligned_cols=111  Identities=12%  Similarity=0.009  Sum_probs=76.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHh--CCCCeEEEEchHHHHHHHHHH----h---CCCc-----------------------
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQL----S---GITN-----------------------  277 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~--~p~~~~iGvD~~~~a~~~a~~----~---~l~n-----------------------  277 (416)
                      ...+|||+|||+|.++..+++.  .|..+++|+|++..+++.+++    .   ++.+                       
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            3578999999999999999998  788899999987666555442    2   2222                       


Q ss_pred             ---EE-------------EEEcChhhhhhhh-hccCCCceeEEEEECCCCCCCCcchh---hhhhhHHHHHHHHhhccCC
Q 014919          278 ---GY-------------FIATNATSTFRSI-VASYPGKLILVSIQCPNPDFNRPEHR---WRMVQRSLVEAVSDLLVHD  337 (416)
Q Consensus       278 ---v~-------------f~~~Da~~l~~~~-~~~~~~s~D~v~~~fpdpw~k~~h~k---rRl~~~~~l~~i~r~Lkpg  337 (416)
                         ++             |+++|+.+..... +. ...+||.|+++.  |+....+..   ..-....++++++++|+||
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~fD~Iv~np--p~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  207 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVL-AGSAPDVVLTDL--PYGERTHWEGQVPGQPVAGLLRSLASALPAH  207 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH-TTCCCSEEEEEC--CGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred             hhhhhhhccccccccccceeeccccccccccccc-CCCCceEEEeCC--CeeccccccccccccHHHHHHHHHHHhcCCC
Confidence               66             9999987642100 00 234899999983  332111100   0112358999999999999


Q ss_pred             cEEEEE
Q 014919          338 GKVFLQ  343 (416)
Q Consensus       338 G~l~l~  343 (416)
                      |.+++.
T Consensus       208 G~l~~~  213 (250)
T 1o9g_A          208 AVIAVT  213 (250)
T ss_dssp             CEEEEE
T ss_pred             cEEEEe
Confidence            999994

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.09  E-value=4.1e-10  Score=104.98  Aligned_cols=118  Identities=13%  Similarity=0.175  Sum_probs=90.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCC-ceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPG-KLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~-s~D~v  303 (416)
                      .+.+|||||||+|.+++.+|+..|..+++|+|+++    .|.++++.+++. ++++.++|+.+-+      +++ .||.|
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l------~~~~~~D~I   88 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAF------EETDQVSVI   88 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC------CGGGCCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhc------ccCcCCCEE
Confidence            36799999999999999999999999999999754    455566677887 5999999986542      233 69998


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      ++.-.        .+ . +-.++++...+.|+|+|+|+++.-.  -...+++.+.++||...
T Consensus        89 viaG~--------Gg-~-~i~~Il~~~~~~L~~~~~lVlq~~~--~~~~vr~~L~~~Gf~i~  138 (225)
T 3kr9_A           89 TIAGM--------GG-R-LIARILEEGLGKLANVERLILQPNN--REDDLRIWLQDHGFQIV  138 (225)
T ss_dssp             EEEEE--------CH-H-HHHHHHHHTGGGCTTCCEEEEEESS--CHHHHHHHHHHTTEEEE
T ss_pred             EEcCC--------Ch-H-HHHHHHHHHHHHhCCCCEEEEECCC--CHHHHHHHHHHCCCEEE
Confidence            86411        11 1 2248899999999999999998653  34567778889988654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.08  E-value=1.3e-10  Score=109.05  Aligned_cols=98  Identities=14%  Similarity=0.097  Sum_probs=74.8

Q ss_pred             CCeEEEEeccccHHHHHHHHh----CCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhh--hhhhhccCCCceeEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST--FRSIVASYPGKLILVS  304 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~----~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l--~~~~~~~~~~s~D~v~  304 (416)
                      ..+|||||||+|..+..||+.    .|+.+++|||++..+++.++.. ..|++++++|+.+.  ++ .+  ...+||.|+
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~-~~~v~~~~gD~~~~~~l~-~~--~~~~fD~I~  157 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD-MENITLHQGDCSDLTTFE-HL--REMAHPLIF  157 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG-CTTEEEEECCSSCSGGGG-GG--SSSCSSEEE
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc-CCceEEEECcchhHHHHH-hh--ccCCCCEEE
Confidence            579999999999999999997    7889999999876655444322 36899999999874  22 11  234799998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHh-hccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSD-LLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r-~LkpgG~l~l~  343 (416)
                      +...   +    .    ..+.+++++.+ +|||||+|++.
T Consensus       158 ~d~~---~----~----~~~~~l~~~~r~~LkpGG~lv~~  186 (236)
T 2bm8_A          158 IDNA---H----A----NTFNIMKWAVDHLLEEGDYFIIE  186 (236)
T ss_dssp             EESS---C----S----SHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             ECCc---h----H----hHHHHHHHHHHhhCCCCCEEEEE
Confidence            8643   1    1    12478999997 99999999984

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.07  E-value=3e-10  Score=103.85  Aligned_cols=99  Identities=18%  Similarity=0.200  Sum_probs=76.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+++.. |+.+++|+|++..    |.+++...+++|+.+.++|+...+    + .+++||.|+
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~v~  151 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGY----E-PLAPYDRIY  151 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCC----G-GGCCEEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC----C-CCCCeeEEE
Confidence            46799999999999999999987 6689999997544    444444567889999999985431    1 256899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  347 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~  347 (416)
                      ++.+.++.              .+++.++|||||.+++.+...
T Consensus       152 ~~~~~~~~--------------~~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          152 TTAAGPKI--------------PEPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             ESSBBSSC--------------CHHHHHTEEEEEEEEEEESSS
T ss_pred             ECCchHHH--------------HHHHHHHcCCCcEEEEEECCC
Confidence            87654432              247899999999999987543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.07  E-value=5.8e-10  Score=106.97  Aligned_cols=106  Identities=11%  Similarity=0.014  Sum_probs=78.8

Q ss_pred             CCeEEEEeccc---cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhh--------hhhccCC
Q 014919          231 QPLVVDIGSGN---GLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFR--------SIVASYP  297 (416)
Q Consensus       231 ~~~vLDIGCG~---G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~--------~~~~~~~  297 (416)
                      ...|||||||+   |.++..+++.+|+.+++|+|++..+++.+++.  ...|++|+++|+.+...        +.+  +.
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~--d~  155 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMI--DF  155 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHC--CT
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccC--CC
Confidence            47899999999   99888788888999999999876665554432  24689999999976410        123  23


Q ss_pred             CceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          298 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       298 ~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .++|.|++++.-.|.....      ...+|++++++|+|||+|++..
T Consensus       156 ~~~d~v~~~~vlh~~~d~~------~~~~l~~~~~~L~pGG~l~i~~  196 (274)
T 2qe6_A          156 SRPAAIMLVGMLHYLSPDV------VDRVVGAYRDALAPGSYLFMTS  196 (274)
T ss_dssp             TSCCEEEETTTGGGSCTTT------HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCEEEEEechhhhCCcHH------HHHHHHHHHHhCCCCcEEEEEE
Confidence            5899998876555433321      1378999999999999999864

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.07  E-value=6.4e-10  Score=109.91  Aligned_cols=101  Identities=18%  Similarity=0.231  Sum_probs=75.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH---HHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~---~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+|+. +..+++|+|++   ..|.++++.+++ ++++++++|+.++     +++++++|.|++
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~Ivs  137 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-----HLPVEKVDVIIS  137 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-----CCSCSCEEEEEE
T ss_pred             CCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHh-----cCCCCcEEEEEE
Confidence            3679999999999999999987 45699999964   445555666777 6899999999876     334689999997


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  341 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~  341 (416)
                      +.. ++.- .+.   ...+.+++++.++|||||.++
T Consensus       138 ~~~-~~~l-~~~---~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          138 EWM-GYFL-LFE---SMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             CCC-BTTB-TTT---CHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCc-hhhc-cCH---HHHHHHHHHHHhhcCCCcEEE
Confidence            631 1110 111   012478999999999999987

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.07  E-value=5.4e-10  Score=110.25  Aligned_cols=103  Identities=18%  Similarity=0.279  Sum_probs=79.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ..+|||||||+|.++..+++++|+.+++++|+   +..+.+++...++. +++|+.+|+.+. +. +  .++.+|.|++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~-~--~~~~~D~v~~~  255 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDA-RN-F--EGGAADVVMLN  255 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCG-GG-G--TTCCEEEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccC-cc-c--CCCCccEEEEe
Confidence            68999999999999999999999999999996   45566666566664 699999999875 21 1  25679999987


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ..-.+....+      ...+|++++++|+|||++++.
T Consensus       256 ~vlh~~~~~~------~~~~l~~~~~~L~pgG~l~i~  286 (352)
T 3mcz_A          256 DCLHYFDARE------AREVIGHAAGLVKPGGALLIL  286 (352)
T ss_dssp             SCGGGSCHHH------HHHHHHHHHHTEEEEEEEEEE
T ss_pred             cccccCCHHH------HHHHHHHHHHHcCCCCEEEEE
Confidence            5432211111      148899999999999999885

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.07  E-value=8.6e-10  Score=103.09  Aligned_cols=120  Identities=14%  Similarity=0.097  Sum_probs=90.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|+|||||+|.+++.+|+..|..+++|+|++.    .|.++++.+++.+ +++.++|+.+.+.     +.+.||.|+
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~-----~~~~~D~Iv   95 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE-----EADNIDTIT   95 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC-----GGGCCCEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc-----cccccCEEE
Confidence            36899999999999999999999888999999754    4555666778864 9999999877521     223699987


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~  366 (416)
                      +--.        .. . +-.++|....+.|+++|+|+++.-..  .+.+++.+.++||.+..
T Consensus        96 iaGm--------Gg-~-lI~~IL~~~~~~l~~~~~lIlqp~~~--~~~lr~~L~~~Gf~i~~  145 (230)
T 3lec_A           96 ICGM--------GG-R-LIADILNNDIDKLQHVKTLVLQPNNR--EDDLRKWLAANDFEIVA  145 (230)
T ss_dssp             EEEE--------CH-H-HHHHHHHHTGGGGTTCCEEEEEESSC--HHHHHHHHHHTTEEEEE
T ss_pred             EeCC--------ch-H-HHHHHHHHHHHHhCcCCEEEEECCCC--hHHHHHHHHHCCCEEEE
Confidence            5310        11 1 22488999999999999999986442  55677888899887543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.07  E-value=1.2e-09  Score=109.40  Aligned_cols=123  Identities=15%  Similarity=0.176  Sum_probs=85.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..|||+|||+|.+++.+|+..+..+++|+|++..    |.++++..++ ++++|+++|+.++     +.+++++|.|+
T Consensus       217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~-----~~~~~~fD~Ii  291 (373)
T 3tm4_A          217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL-----SQYVDSVDFAI  291 (373)
T ss_dssp             CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG-----GGTCSCEEEEE
T ss_pred             CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC-----CcccCCcCEEE
Confidence            467899999999999999999987779999997544    5555556677 5899999999987     32468999999


Q ss_pred             EECCCCCCCCcc--hhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919          305 IQCPNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       305 ~~fpdpw~k~~h--~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~  364 (416)
                      +|  .||.....  ....-+...+++++.++|  +|.+++.+.+...+   .+.+.+.|+..
T Consensus       292 ~n--pPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~~---~~~~~~~G~~~  346 (373)
T 3tm4_A          292 SN--LPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKAI---EEAIAENGFEI  346 (373)
T ss_dssp             EE--CCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHHH---HHHHHHTTEEE
T ss_pred             EC--CCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHHH---HHHHHHcCCEE
Confidence            98  44432211  111123468899999999  44444445444443   34566777653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.07  E-value=3.7e-10  Score=101.42  Aligned_cols=118  Identities=14%  Similarity=0.142  Sum_probs=80.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC---------CeEEEEchHHHHHHHHHHhCCCcEEEE-EcChhhhhh-----hhhcc
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKD---------LNFLGLELVTHCRDSLQLSGITNGYFI-ATNATSTFR-----SIVAS  295 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~---------~~~iGvD~~~~a~~~a~~~~l~nv~f~-~~Da~~l~~-----~~~~~  295 (416)
                      +.+|||||||+|.++..++++.+.         .+++|+|++..       ..+.+++++ ++|+.....     ..+  
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~-------~~~~~~~~~~~~d~~~~~~~~~~~~~~--   93 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI-------FPLEGATFLCPADVTDPRTSQRILEVL--   93 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC-------CCCTTCEEECSCCTTSHHHHHHHHHHS--
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc-------ccCCCCeEEEeccCCCHHHHHHHHHhc--
Confidence            689999999999999999999765         89999998762       235689999 999865410     112  


Q ss_pred             CCCceeEEEEECCCCCCCCcchhh-----hhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHh
Q 014919          296 YPGKLILVSIQCPNPDFNRPEHRW-----RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE  359 (416)
Q Consensus       296 ~~~s~D~v~~~fpdpw~k~~h~kr-----Rl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~  359 (416)
                      ++++||.|+++++..+.  .|+..     ......+++++.++|||||.|++.+-...-...+.+.+..
T Consensus        94 ~~~~fD~V~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~  160 (196)
T 2nyu_A           94 PGRRADVILSDMAPNAT--GFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTE  160 (196)
T ss_dssp             GGGCEEEEEECCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCC--CCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHH
Confidence            34689999987543321  11100     0011478999999999999999975332223334444444

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.06  E-value=1.7e-09  Score=108.65  Aligned_cols=113  Identities=13%  Similarity=0.192  Sum_probs=80.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCCC--cEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l~--nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||+|||+|.+++.+|+.. ..+++|+|++    ..|.++++.++++  |++|+++|+.+.++... ....+||.|
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~-~~~~~fD~I  289 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYAR-RHHLTYDII  289 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHH-HTTCCEEEE
T ss_pred             CCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHH-HhCCCccEE
Confidence            36799999999999999999863 3489999964    4555666677887  89999999988654321 124589999


Q ss_pred             EEECCCCCCCCc-chhhhh--hhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          304 SIQCPNPDFNRP-EHRWRM--VQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       304 ~~~fpdpw~k~~-h~krRl--~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      +++  .|.+... +.....  ...++++.+.++|+|||.+++.+..
T Consensus       290 i~D--PP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~  333 (385)
T 2b78_A          290 IID--PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  333 (385)
T ss_dssp             EEC--CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEC--CCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            886  2332110 111111  1246788899999999999998754

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.06  E-value=8e-10  Score=109.56  Aligned_cols=208  Identities=12%  Similarity=0.067  Sum_probs=120.5

Q ss_pred             ChhhHHHHHHHhccCCeEE--Eec---cceEEEeCCCCchHHHHHHHHHhhhcCCCC---eEEEcchhHH-H-HhcccCC
Q 014919          115 GPRSVEEITSTITKCKKVI--WVG---PVKFRFSSQYSNGASKLTGMLCKVSQGTCN---VTVIGSMACK-A-IAKVSSS  184 (416)
Q Consensus       115 Gp~T~~~~~~~~~~a~~i~--wnG---p~G~~e~~~f~~GT~~l~~~~a~~~~~~~~---~~v~gg~~~~-~-~~~~~~~  184 (416)
                      ||.|++++++.++..+..+  |..   .+|+++.+   .|+|.+.+..+.....+..   .++.+-.... . .+.....
T Consensus        63 ~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~---~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (359)
T 1x19_A           63 GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE---DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMG  139 (359)
T ss_dssp             CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHHHHHHHHTGGG
T ss_pred             CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEee---CCeEecCHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence            8999999999999876653  444   45888765   2455554332222222211   1222211111 1 1111112


Q ss_pred             -ccceeeecCCceEeeeecccCCCC---c-cc----ccccCc-c-ccccccccCCCCCCeEEEEeccccHHHHHHHHhCC
Q 014919          185 -IFGLNMVESGSAVWEFLKGRMLPG---V-SA----LDRAFP-F-DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK  253 (416)
Q Consensus       185 -~~~~st~~GGGa~le~l~gr~lPg---~-~a----L~~~~p-~-~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p  253 (416)
                       .+.+++  |..  |+++..  .|.   . +.    +..... . ...+.+.++.....+|||||||+|.++..+++++|
T Consensus       140 L~~~l~~--g~~--~~~~~~--~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p  213 (359)
T 1x19_A          140 LSQAVRG--QKN--FKGQVP--YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP  213 (359)
T ss_dssp             HHHHHTT--SCC--CCCSSC--SSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCT
T ss_pred             HHHHHhc--CCC--Cccccc--CchhhHHHHHHHHHHHHhccchhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCC
Confidence             245566  322  555432  222   1 11    111111 0 00122223222468999999999999999999999


Q ss_pred             CCeEEEEch---HHHHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHH
Q 014919          254 DLNFLGLEL---VTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEA  329 (416)
Q Consensus       254 ~~~~iGvD~---~~~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~  329 (416)
                      +.+++++|+   +..|.+++...++.+ ++|+.+|+.+.     +.++  .|.|++...-....+.      ....+|++
T Consensus       214 ~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~--~D~v~~~~vlh~~~d~------~~~~~l~~  280 (359)
T 1x19_A          214 ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE-----SYPE--ADAVLFCRILYSANEQ------LSTIMCKK  280 (359)
T ss_dssp             TCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTS-----CCCC--CSEEEEESCGGGSCHH------HHHHHHHH
T ss_pred             CCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccC-----CCCC--CCEEEEechhccCCHH------HHHHHHHH
Confidence            999999996   445555555567765 99999999765     2123  3999887543211110      12478999


Q ss_pred             HHhhccCCcEEEEEe
Q 014919          330 VSDLLVHDGKVFLQS  344 (416)
Q Consensus       330 i~r~LkpgG~l~l~t  344 (416)
                      ++++|+|||++++..
T Consensus       281 ~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          281 AFDAMRSGGRLLILD  295 (359)
T ss_dssp             HHTTCCTTCEEEEEE
T ss_pred             HHHhcCCCCEEEEEe
Confidence            999999999997753

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.06  E-value=3e-10  Score=104.77  Aligned_cols=101  Identities=25%  Similarity=0.342  Sum_probs=75.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-----CCCeEEEEchHHH----HHHHHHHhC-----CCcEEEEEcChhhhhhhhhcc
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-----KDLNFLGLELVTH----CRDSLQLSG-----ITNGYFIATNATSTFRSIVAS  295 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-----p~~~~iGvD~~~~----a~~~a~~~~-----l~nv~f~~~Da~~l~~~~~~~  295 (416)
                      .+.+|||||||+|.++..+++..     |+.+++|+|++..    |.+++...+     ..|++++++|+.+...... .
T Consensus        80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~  158 (227)
T 2pbf_A           80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK-K  158 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH-H
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC-c
Confidence            36799999999999999999986     5789999997544    444444556     5789999999987521000 1


Q ss_pred             CCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          296 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       296 ~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      ..++||.|++..+.++              +++.+.+.|+|||++++...
T Consensus       159 ~~~~fD~I~~~~~~~~--------------~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          159 ELGLFDAIHVGASASE--------------LPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHCCEEEEEECSBBSS--------------CCHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCcCEEEECCchHH--------------HHHHHHHhcCCCcEEEEEEc
Confidence            2568999988754332              34778999999999999764

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.06  E-value=2.6e-10  Score=112.77  Aligned_cols=116  Identities=17%  Similarity=0.279  Sum_probs=82.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ..+|||||||+|.++..+++.+|+.+++|+|++..+++    ++..+++. ++++.+|+...       .+++||.|+++
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~-------~~~~fD~Iv~~  268 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSE-------VKGRFDMIISN  268 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTT-------CCSCEEEEEEC
T ss_pred             CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEcccccc-------ccCCeeEEEEC
Confidence            56899999999999999999999999999997655544    44444543 67888988654       26789999998


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC-cHHHHHHHHHHH
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQF  357 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD-~~~~~~~~~~~~  357 (416)
                      .|-.+....+   .-....++++++++|||||.+++.+. ...|...+.+.+
T Consensus       269 ~~~~~g~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f  317 (343)
T 2pjd_A          269 PPFHDGMQTS---LDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETF  317 (343)
T ss_dssp             CCCCSSSHHH---HHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHH
T ss_pred             CCcccCccCC---HHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhc
Confidence            4422210001   11235899999999999999998753 333444444444

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.06  E-value=3.5e-10  Score=104.29  Aligned_cols=97  Identities=14%  Similarity=0.263  Sum_probs=73.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHH----HHHHHhC-----CCcEEEEEcChhhhhhhhhccCCCc
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCR----DSLQLSG-----ITNGYFIATNATSTFRSIVASYPGK  299 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~----~~a~~~~-----l~nv~f~~~Da~~l~~~~~~~~~~s  299 (416)
                      .+.+|||||||+|.++..+++.. |..+++|+|++..++    +++...+     .+|+.++++|+....   .  .+++
T Consensus        77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~--~~~~  151 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY---A--EEAP  151 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC---G--GGCC
T ss_pred             CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc---c--cCCC
Confidence            36799999999999999999885 667999999755444    4444434     468999999987541   1  3568


Q ss_pred             eeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          300 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       300 ~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      ||.|++..+.+              .+++++.++|||||.+++.+.
T Consensus       152 fD~i~~~~~~~--------------~~~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          152 YDAIHVGAAAP--------------VVPQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             EEEEEECSBBS--------------SCCHHHHHTEEEEEEEEEEES
T ss_pred             cCEEEECCchH--------------HHHHHHHHhcCCCcEEEEEEe
Confidence            99998874432              245688999999999999764

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.05  E-value=2.9e-10  Score=103.23  Aligned_cols=121  Identities=14%  Similarity=0.103  Sum_probs=80.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhh-----hhhhc-cCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF-----RSIVA-SYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~-----~~~~~-~~~~s~D~v  303 (416)
                      .+.+|||+|||+|.++..+|++  ..+++|+|++..       ...+|++++++|+.+..     .+.++ ...++||.|
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~-------~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~V   95 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM-------EEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDV   95 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC-------CCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEE
T ss_pred             CCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc-------ccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEE
Confidence            3689999999999999999988  779999998652       24578999999987641     11120 001489999


Q ss_pred             EEECCCCCCCCc---chhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHh
Q 014919          304 SIQCPNPDFNRP---EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE  359 (416)
Q Consensus       304 ~~~fpdpw~k~~---h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~  359 (416)
                      +++.+..+....   |.+..-.....++.+.++|||||.|++.+-...-...+...++.
T Consensus        96 lsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~  154 (191)
T 3dou_A           96 VSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRK  154 (191)
T ss_dssp             EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGG
T ss_pred             ecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHH
Confidence            886432221110   11101113577899999999999999875333334445555544

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.05  E-value=7.7e-10  Score=108.09  Aligned_cols=98  Identities=16%  Similarity=0.182  Sum_probs=76.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+|+..+ +.+++|+|++..    |.++++..+++|++++++|+.+.+.     .+++||.|+
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~-----~~~~fD~Iv  149 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP-----EFSPYDVIF  149 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----GGCCEEEEE
T ss_pred             CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc-----cCCCeEEEE
Confidence            367999999999999999999877 478999997544    4444555688899999999987521     357899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      +..+-++.              .+.+.+.|||||.+++....
T Consensus       150 ~~~~~~~~--------------~~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          150 VTVGVDEV--------------PETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             ECSBBSCC--------------CHHHHHHEEEEEEEEEEBCB
T ss_pred             EcCCHHHH--------------HHHHHHhcCCCcEEEEEECC
Confidence            88554432              14678899999999998654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.05  E-value=1.7e-09  Score=108.92  Aligned_cols=131  Identities=12%  Similarity=0.119  Sum_probs=89.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCC-C-cEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGI-T-NGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l-~-nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||+|||+|.+++.+|+.. ..+++|+|++..+    .++++.+++ + |++|+++|+.+++.... ....+||.|
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~-~~~~~fD~I  297 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYR-DRGEKFDVI  297 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHH-HTTCCEEEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHH-hcCCCCCEE
Confidence            36899999999999999999874 4589999976554    445556677 6 89999999988754221 124689999


Q ss_pred             EEECCCCCCCC-cchhhh--hhhHHHHHHHHhhccCCcEEEEEeCcH-----HHHHHHHHHHHhCCCCc
Q 014919          304 SIQCPNPDFNR-PEHRWR--MVQRSLVEAVSDLLVHDGKVFLQSDIE-----EVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       304 ~~~fpdpw~k~-~h~krR--l~~~~~l~~i~r~LkpgG~l~l~tD~~-----~~~~~~~~~~~~~~~~~  364 (416)
                      +++.  |.+.. .....+  -....++..+.+.|+|||.+++.+...     .+.+.+.+.+.+.+...
T Consensus       298 i~dp--P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~  364 (396)
T 3c0k_A          298 VMDP--PKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDV  364 (396)
T ss_dssp             EECC--SSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred             EECC--CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeE
Confidence            8863  32211 111000  123588999999999999999987543     22333334666666543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.05  E-value=7.6e-10  Score=110.39  Aligned_cols=101  Identities=16%  Similarity=0.182  Sum_probs=76.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ...+|||||||+|.++..+++++|+.+++++|+   +..|.+++...++ ++++|+.+|+.+.    +  +. .+|.|++
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~----~--p~-~~D~v~~  274 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFET----I--PD-GADVYLI  274 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTC----C--CS-SCSEEEE
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCC----C--CC-CceEEEh
Confidence            468999999999999999999999999999997   3344444555565 5799999998732    2  23 7999988


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ...-.++.+.      ....+|++++++|+|||++++.
T Consensus       275 ~~vlh~~~d~------~~~~~L~~~~~~L~pgG~l~i~  306 (369)
T 3gwz_A          275 KHVLHDWDDD------DVVRILRRIATAMKPDSRLLVI  306 (369)
T ss_dssp             ESCGGGSCHH------HHHHHHHHHHTTCCTTCEEEEE
T ss_pred             hhhhccCCHH------HHHHHHHHHHHHcCCCCEEEEE
Confidence            7433221111      1137899999999999999985

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.04  E-value=2.2e-09  Score=108.06  Aligned_cols=113  Identities=17%  Similarity=0.167  Sum_probs=80.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+|||+|.+++.+|+. +..+++|+|++..+    .++++.++++ |++|+++|+.++++... ...++||.|+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~Vi  294 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQ-KKGEKFDIVV  294 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH-HTTCCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHH-hhCCCCCEEE
Confidence            3689999999999999999987 45589999975544    4455567777 89999999988743221 1256899998


Q ss_pred             EECCCCCCC-Ccchhhh--hhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          305 IQCPNPDFN-RPEHRWR--MVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       305 ~~fpdpw~k-~~h~krR--l~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      ++  .|.+. .......  -....++.++.+.|+|||.+++.+..
T Consensus       295 ~d--pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  337 (396)
T 2as0_A          295 LD--PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  337 (396)
T ss_dssp             EC--CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             EC--CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            85  23222 1111111  11357899999999999999988654

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.04  E-value=4e-10  Score=104.92  Aligned_cols=99  Identities=14%  Similarity=0.239  Sum_probs=75.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+++..+ .+++|+|++..    |.+++...++.|+.++.+|+..-    ++ ....||.|++
T Consensus        91 ~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~-~~~~fD~Ii~  164 (235)
T 1jg1_A           91 PGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG----FP-PKAPYDVIIV  164 (235)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----CG-GGCCEEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccC----CC-CCCCccEEEE
Confidence            367899999999999999999987 89999997544    44445556788999999998322    11 1235999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE  348 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~  348 (416)
                      ..+.++              +.+++.+.|+|||.+++.+....
T Consensus       165 ~~~~~~--------------~~~~~~~~L~pgG~lvi~~~~~~  193 (235)
T 1jg1_A          165 TAGAPK--------------IPEPLIEQLKIGGKLIIPVGSYH  193 (235)
T ss_dssp             CSBBSS--------------CCHHHHHTEEEEEEEEEEECSSS
T ss_pred             CCcHHH--------------HHHHHHHhcCCCcEEEEEEecCC
Confidence            755443              12467899999999999887543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.02  E-value=1.3e-09  Score=102.69  Aligned_cols=117  Identities=15%  Similarity=0.118  Sum_probs=89.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCC-ceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITN-GYFIATNATSTFRSIVASYPG-KLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~-s~D~v  303 (416)
                      .+.+|||||||+|.+++.+|+..|..+++|+|++.    .|.++++.+++.| +++.++|..+.+      .++ +||.|
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~------~~~~~~D~I   94 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI------EKKDAIDTI   94 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC------CGGGCCCEE
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc------CccccccEE
Confidence            36799999999999999999999888999999754    4555566678865 999999987752      233 59998


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~  364 (416)
                      ++.-        -.+ .+ -.++|+...+.|+++++|+++.-..  ...+++.+.++||.+
T Consensus        95 viag--------mGg-~l-I~~IL~~~~~~L~~~~~lIlq~~~~--~~~lr~~L~~~Gf~i  143 (244)
T 3gnl_A           95 VIAG--------MGG-TL-IRTILEEGAAKLAGVTKLILQPNIA--AWQLREWSEQNNWLI  143 (244)
T ss_dssp             EEEE--------ECH-HH-HHHHHHHTGGGGTTCCEEEEEESSC--HHHHHHHHHHHTEEE
T ss_pred             EEeC--------Cch-HH-HHHHHHHHHHHhCCCCEEEEEcCCC--hHHHHHHHHHCCCEE
Confidence            7531        111 12 2488999999999999999986432  445677788888864

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.02  E-value=9.6e-10  Score=108.80  Aligned_cols=102  Identities=18%  Similarity=0.288  Sum_probs=77.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ...+|||||||+|.++..+++++|+.+++++|+   +..|.+++...++. |++|+.+|+.+.    +   +..+|.|++
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~---~~~~D~v~~  255 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP----L---PRKADAIIL  255 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC----C---SSCEEEEEE
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCC----C---CCCccEEEE
Confidence            467999999999999999999999999999995   45555555566765 899999998652    2   234999988


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ...-..+...      ....++++++++|+|||++++..
T Consensus       256 ~~vl~~~~~~------~~~~~l~~~~~~L~pgG~l~i~e  288 (360)
T 1tw3_A          256 SFVLLNWPDH------DAVRILTRCAEALEPGGRILIHE  288 (360)
T ss_dssp             ESCGGGSCHH------HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccccCCCHH------HHHHHHHHHHHhcCCCcEEEEEE
Confidence            7542211111      11378999999999999998863

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.02  E-value=1.7e-09  Score=97.86  Aligned_cols=112  Identities=13%  Similarity=0.212  Sum_probs=79.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+.+|||+|||+|.++..+++. +..+++|+|++..+++.++++- .|++++++|+.++        +++||.|+++.|-
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~d~~~~--------~~~~D~v~~~~p~  120 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNC-GGVNFMVADVSEI--------SGKYDTWIMNPPF  120 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHC-TTSEEEECCGGGC--------CCCEEEEEECCCC
T ss_pred             CCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhc-CCCEEEECcHHHC--------CCCeeEEEECCCc
Confidence            3679999999999999999987 5568999999888887776543 3899999999875        3689999988433


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCC
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG  361 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~  361 (416)
                      .|.  ++.    ....+++++.+.|   |.+++..+. ....++.+.+.+.+
T Consensus       121 ~~~--~~~----~~~~~l~~~~~~~---g~~~~~~~~-~~~~~~~~~~~~~g  162 (200)
T 1ne2_A          121 GSV--VKH----SDRAFIDKAFETS---MWIYSIGNA-KARDFLRREFSARG  162 (200)
T ss_dssp             -------------CHHHHHHHHHHE---EEEEEEEEG-GGHHHHHHHHHHHE
T ss_pred             hhc--cCc----hhHHHHHHHHHhc---CcEEEEEcC-chHHHHHHHHHHCC
Confidence            322  211    1247889999998   445554433 33456667777766

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.02  E-value=5.4e-11  Score=110.89  Aligned_cols=96  Identities=17%  Similarity=0.109  Sum_probs=72.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      +.+|||+|||+|.++..+|+.  ..+++|+|++..    |.++++..++ +|++|+++|+.++.      .+++||.|++
T Consensus        79 ~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~v~~  150 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA------SFLKADVVFL  150 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG------GGCCCSEEEE
T ss_pred             CCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc------ccCCCCEEEE
Confidence            689999999999999999987  489999997554    4445556677 58999999998872      3578999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      +.|-.+.  ....      ..+.+++++|+|||.+++
T Consensus       151 ~~~~~~~--~~~~------~~~~~~~~~L~pgG~~i~  179 (241)
T 3gdh_A          151 SPPWGGP--DYAT------AETFDIRTMMSPDGFEIF  179 (241)
T ss_dssp             CCCCSSG--GGGG------SSSBCTTTSCSSCHHHHH
T ss_pred             CCCcCCc--chhh------hHHHHHHhhcCCcceeHH
Confidence            7433321  1111      245578899999998655

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.01  E-value=5.1e-10  Score=106.72  Aligned_cols=106  Identities=13%  Similarity=0.127  Sum_probs=71.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+.+|||||||+|.++..||++  ..+++|+|++..+++.++++-..+  +++.++.++..+.....+++||.|++++.-
T Consensus        45 ~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~--~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l  120 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR--CVTIDLLDITAEIPKELAGHFDFVLNDRLI  120 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS--CCEEEECCTTSCCCGGGTTCCSEEEEESCG
T ss_pred             CcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc--cceeeeeecccccccccCCCccEEEEhhhh
Confidence            4679999999999999999987  569999999888877776543332  233333332100000025789999988543


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      .++...+      ...+++++.++| |||.++++...
T Consensus       121 ~~~~~~~------~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          121 NRFTTEE------ARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             GGSCHHH------HHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             HhCCHHH------HHHHHHHHHHhC-cCcEEEEEecc
Confidence            3221111      246899999999 99999998654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.00  E-value=2.1e-09  Score=106.05  Aligned_cols=109  Identities=11%  Similarity=0.091  Sum_probs=76.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCc--EEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~n--v~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      +.+|||+|||+|.+++.+|+..  .+++|+|++..++    ++++.++++|  ++++++|+.+++.... ...++||.|+
T Consensus       154 ~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~-~~~~~fD~Ii  230 (332)
T 2igt_A          154 PLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREE-RRGSTYDIIL  230 (332)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHH-HHTCCBSEEE
T ss_pred             CCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHH-hcCCCceEEE
Confidence            5799999999999999999864  4999999765544    4455567774  9999999988743211 0146899999


Q ss_pred             EECCCCCCCCc--c--hhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRP--E--HRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~--h--~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ++.  |.+...  .  ....-....+++.+.++|+|||.|++.+
T Consensus       231 ~dP--P~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~  272 (332)
T 2igt_A          231 TDP--PKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  272 (332)
T ss_dssp             ECC--CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             ECC--ccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            862  321110  0  0000113588999999999999977754

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.00  E-value=2e-10  Score=110.25  Aligned_cols=131  Identities=11%  Similarity=0.087  Sum_probs=81.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh---------------------CC-------------
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---------------------GI-------------  275 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~---------------------~l-------------  275 (416)
                      .+.+|||||||+|.+.. ++...+..+++|+|++..+++.+++.                     +.             
T Consensus        71 ~~~~vLDiGcG~G~~~~-l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CCSEEEEETCTTCCGGG-TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHH-HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            36799999999999544 44444567999999877766654431                     10             


Q ss_pred             CcEEEEEcChhhhhhh-hhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc--------
Q 014919          276 TNGYFIATNATSTFRS-IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI--------  346 (416)
Q Consensus       276 ~nv~f~~~Da~~l~~~-~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~--------  346 (416)
                      ..+.++++|+...++- ...+++++||.|++++.-.|......    ....+|++++++|||||.|++....        
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~----~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~  225 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLA----SFQRALDHITTLLRPGGHLLLIGALEESWYLAG  225 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHH----HHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHH----HHHHHHHHHHHhcCCCCEEEEEEecCcceEEcC
Confidence            0156778898773110 00013567999999865333111000    1248899999999999999985210        


Q ss_pred             -------HHHHHHHHHHHHhCCCCce
Q 014919          347 -------EEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       347 -------~~~~~~~~~~~~~~~~~~~  365 (416)
                             .--.+++.+.|++.||...
T Consensus       226 ~~~~~~~~~~~~~l~~~l~~aGf~~~  251 (289)
T 2g72_A          226 EARLTVVPVSEEEVREALVRSGYKVR  251 (289)
T ss_dssp             TEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred             CeeeeeccCCHHHHHHHHHHcCCeEE
Confidence                   0013456667777777543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.99  E-value=1.7e-09  Score=108.35  Aligned_cols=101  Identities=16%  Similarity=0.232  Sum_probs=75.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH---HHHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~---~~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+|++ ...+++|+|++   ..|.++++.+++.+ ++++++|+.++     + .+++||.|++
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~D~Iv~  135 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDI-----S-LPEKVDVIIS  135 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGC-----C-CSSCEEEEEE
T ss_pred             CCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhc-----C-cCCcceEEEE
Confidence            4689999999999999999987 34599999964   45566666677764 99999999886     2 2378999988


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      .....+. . +.   -....+++.+.++|||||.+++
T Consensus       136 ~~~~~~l-~-~e---~~~~~~l~~~~~~LkpgG~li~  167 (376)
T 3r0q_C          136 EWMGYFL-L-RE---SMFDSVISARDRWLKPTGVMYP  167 (376)
T ss_dssp             CCCBTTB-T-TT---CTHHHHHHHHHHHEEEEEEEES
T ss_pred             cChhhcc-c-ch---HHHHHHHHHHHhhCCCCeEEEE
Confidence            5321111 1 00   0124789999999999999876

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.99  E-value=2.2e-09  Score=105.54  Aligned_cols=100  Identities=15%  Similarity=0.263  Sum_probs=74.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchH---HHHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~---~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||||||+|.++..+|++ +..+++|+|++   ..|.++++.+++. +++++++|+.++     +++++++|.|++.
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~Ivs~  112 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDV-----HLPFPKVDIIISE  112 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-----CCSSSCEEEEEEC
T ss_pred             CCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhc-----cCCCCcccEEEEe
Confidence            579999999999999998886 55699999964   4555566667775 699999999876     3245789999986


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  341 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~  341 (416)
                      .+....  .+.   -..+.++..+.++|||||.++
T Consensus       113 ~~~~~l--~~~---~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          113 WMGYFL--LYE---SMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CCBTTB--STT---CCHHHHHHHHHHHEEEEEEEE
T ss_pred             Cchhhc--ccH---HHHHHHHHHHHhhcCCCeEEE
Confidence            332111  011   012478899999999999987

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.99  E-value=1.9e-10  Score=109.98  Aligned_cols=102  Identities=12%  Similarity=0.018  Sum_probs=71.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCC------cEEEE--EcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGIT------NGYFI--ATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~------nv~f~--~~Da~~l~~~~~~~~~~s~D  301 (416)
                      .+.+|||||||+|.++..+|++   .+++|||++.. ...+.+....      |+.|+  ++|+.++       ++++||
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m-~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-------~~~~fD  142 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTL-GVGGHEVPRITESYGWNIVKFKSRVDIHTL-------PVERTD  142 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECC-CCSSCCCCCCCCBTTGGGEEEECSCCTTTS-------CCCCCS
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchh-hhhhhhhhhhhhccCCCeEEEecccCHhHC-------CCCCCc
Confidence            3679999999999999999987   68999998652 1111112222      79999  9999876       367899


Q ss_pred             EEEEECCCCCCCCcch-hhhhhhHHHHHHHHhhccCCc--EEEEEeC
Q 014919          302 LVSIQCPNPDFNRPEH-RWRMVQRSLVEAVSDLLVHDG--KVFLQSD  345 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~-krRl~~~~~l~~i~r~LkpgG--~l~l~tD  345 (416)
                      .|++.+. ........ ..+  ...+|+.+.++|||||  .|++.+-
T Consensus       143 ~V~sd~~-~~~~~~~~d~~~--~l~~L~~~~r~LkpGG~~~fv~kv~  186 (265)
T 2oxt_A          143 VIMCDVG-ESSPKWSVESER--TIKILELLEKWKVKNPSADFVVKVL  186 (265)
T ss_dssp             EEEECCC-CCCSCHHHHHHH--HHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             EEEEeCc-ccCCccchhHHH--HHHHHHHHHHHhccCCCeEEEEEeC
Confidence            9998765 22111100 001  1137899999999999  9988753

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.99  E-value=1.6e-09  Score=111.15  Aligned_cols=111  Identities=13%  Similarity=0.157  Sum_probs=82.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+|||+|..+..+|+..+ ...++|+|++.    .+.+++++.|+.|+.++++|+..+ ...+   +++||.|+
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l-~~~~---~~~FD~Il  180 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAEL-VPHF---SGFFDRIV  180 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHH-HHHH---TTCEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHh-hhhc---cccCCEEE
Confidence            468999999999999999998865 47999999754    445566678999999999999887 3223   57899999


Q ss_pred             EECCCC----CCCCcchhh----------hhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNP----DFNRPEHRW----------RMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdp----w~k~~h~kr----------Rl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ++-|-.    +.+.+..+.          .-.+.++|+.+.+.|||||+|+++|
T Consensus       181 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  234 (456)
T 3m4x_A          181 VDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST  234 (456)
T ss_dssp             EECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            873310    111111111          0124588999999999999999876

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.99  E-value=2.7e-10  Score=115.18  Aligned_cols=101  Identities=21%  Similarity=0.325  Sum_probs=76.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEE--EEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGY--FIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~--f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+.+|||||||+|.++..++++  ..+++|+|++..+++.+++.+.++..  |...++..+     ++++++||.|+++.
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l-----~~~~~~fD~I~~~~  179 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDV-----RRTEGPANVIYAAN  179 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHH-----HHHHCCEEEEEEES
T ss_pred             CCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhc-----ccCCCCEEEEEECC
Confidence            4679999999999999999987  45999999998888888776655432  333344333     22468999999886


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      .-.|..+        ...++++++++|||||.+++.+.
T Consensus       180 vl~h~~d--------~~~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          180 TLCHIPY--------VQSVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             CGGGCTT--------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hHHhcCC--------HHHHHHHHHHHcCCCeEEEEEeC
Confidence            5433321        14899999999999999999754

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.98  E-value=1.8e-10  Score=108.22  Aligned_cols=132  Identities=14%  Similarity=0.030  Sum_probs=87.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC--CC-------------------------------
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG--IT-------------------------------  276 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~--l~-------------------------------  276 (416)
                      .+.+|||||||+|.++..+++..+ .+++|+|++..+++.+++.-  ..                               
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            357899999999999999998765 58999998776666554321  11                               


Q ss_pred             cE-EEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH--------
Q 014919          277 NG-YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE--------  347 (416)
Q Consensus       277 nv-~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~--------  347 (416)
                      ++ .++++|+.+... ..+...++||.|++.+.-.+.. .+.   -....++++++++|||||.|++.+...        
T Consensus       135 ~v~~~~~~d~~~~~~-~~~~~~~~fD~v~~~~~l~~~~-~~~---~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~  209 (265)
T 2i62_A          135 AIKQVLKCDVTQSQP-LGGVSLPPADCLLSTLCLDAAC-PDL---PAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGE  209 (265)
T ss_dssp             HEEEEEECCTTSSST-TTTCCCCCEEEEEEESCHHHHC-SSH---HHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETT
T ss_pred             hheeEEEeeeccCCC-CCccccCCccEEEEhhhhhhhc-CCh---HHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCC
Confidence            28 999999987521 0001127899999875322100 010   012488999999999999999864110        


Q ss_pred             -----H--HHHHHHHHHHhCCCCceee
Q 014919          348 -----E--VMLRMKQQFLEYGKGKLVL  367 (416)
Q Consensus       348 -----~--~~~~~~~~~~~~~~~~~~~  367 (416)
                           .  -.+.+.+.+++.|+.....
T Consensus       210 ~~~~~~~~~~~~~~~~l~~aGf~~~~~  236 (265)
T 2i62_A          210 QKFSSLPLGWETVRDAVEEAGYTIEQF  236 (265)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             ccccccccCHHHHHHHHHHCCCEEEEE
Confidence                 0  1235667788888765433

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.98  E-value=4.8e-10  Score=107.71  Aligned_cols=102  Identities=15%  Similarity=0.154  Sum_probs=74.9

Q ss_pred             CCeEEEEeccccH----HHHHHHHhCC----CCeEEEEchHHHHHHHHHHhC----------------------------
Q 014919          231 QPLVVDIGSGNGL----FLLGMARKRK----DLNFLGLELVTHCRDSLQLSG----------------------------  274 (416)
Q Consensus       231 ~~~vLDIGCG~G~----~~~~lA~~~p----~~~~iGvD~~~~a~~~a~~~~----------------------------  274 (416)
                      ..+|+|+|||+|.    +++.|++..|    +.+++|+|++..+++.|++.-                            
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            4689999999999    5556676645    469999999888888776421                            


Q ss_pred             C-------CcEEEEEcChhhhhhhhhccC-CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          275 I-------TNGYFIATNATSTFRSIVASY-PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       275 l-------~nv~f~~~Da~~l~~~~~~~~-~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .       .+|.|.++|+.+.     |++ .++||.|++...-.++...      .+..+++++++.|+|||.|++.
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~~-----~~~~~~~fDlI~crnvliyf~~~------~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLEK-----QYNVPGPFDAIFCRNVMIYFDKT------TQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTCS-----SCCCCCCEEEEEECSSGGGSCHH------HHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eeechhhcccCeEEecccCCC-----CCCcCCCeeEEEECCchHhCCHH------HHHHHHHHHHHHhCCCcEEEEE
Confidence            0       3699999998763     222 4789999986443333211      2358899999999999999984

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.98  E-value=4.4e-10  Score=102.71  Aligned_cols=106  Identities=10%  Similarity=0.081  Sum_probs=80.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+..|||||||+|.++..++     .+++|+|++..           ++.++++|+.++     ++++++||.|++++.-
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~-----------~~~~~~~d~~~~-----~~~~~~fD~v~~~~~l  125 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR-----NPVHCFDLASL-----------DPRVTVCDMAQV-----PLEDESVDVAVFCLSL  125 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS-----------STTEEESCTTSC-----SCCTTCEEEEEEESCC
T ss_pred             CCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC-----------CceEEEeccccC-----CCCCCCEeEEEEehhc
Confidence            35789999999999988874     58999998654           678899998875     3357899999987543


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH--HHHHHHHHHHhCCCCce
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE--VMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~--~~~~~~~~~~~~~~~~~  365 (416)
                      .|   ..      ...++++++++|+|||.+++..-...  ..+.+.+.+++.|+...
T Consensus       126 ~~---~~------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~  174 (215)
T 2zfu_A          126 MG---TN------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIV  174 (215)
T ss_dssp             CS---SC------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEE
T ss_pred             cc---cC------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEE
Confidence            32   11      14889999999999999999643321  24556778888887644

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.98  E-value=9.4e-10  Score=112.00  Aligned_cols=104  Identities=16%  Similarity=0.101  Sum_probs=74.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----H-------HHHHHHhC--CCcEEEEEcChhhhhhhhhccC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----C-------RDSLQLSG--ITNGYFIATNATSTFRSIVASY  296 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a-------~~~a~~~~--l~nv~f~~~Da~~l~~~~~~~~  296 (416)
                      .+.+|||||||+|.++..+|+..+..+++|+|++..    |       .++++..+  +.|++++++|.... ...++..
T Consensus       242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~-~~~~~~~  320 (433)
T 1u2z_A          242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD-NNRVAEL  320 (433)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT-CHHHHHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccc-ccccccc
Confidence            468999999999999999999888779999996443    3       44455567  57999999865421 0001101


Q ss_pred             CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       297 ~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .++||.|+++..- +.  ..      .+..|+++.++|||||++++.
T Consensus       321 ~~~FDvIvvn~~l-~~--~d------~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          321 IPQCDVILVNNFL-FD--ED------LNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             GGGCSEEEECCTT-CC--HH------HHHHHHHHHTTCCTTCEEEES
T ss_pred             cCCCCEEEEeCcc-cc--cc------HHHHHHHHHHhCCCCeEEEEe
Confidence            4689999986321 21  11      136789999999999999884

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.97  E-value=2.5e-10  Score=109.74  Aligned_cols=102  Identities=16%  Similarity=0.035  Sum_probs=70.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCC------cEEEE--EcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGIT------NGYFI--ATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~------nv~f~--~~Da~~l~~~~~~~~~~s~D  301 (416)
                      .+.+|||||||+|.++..+|++   .+++|||++. ....+.+....      |+.|+  ++|+.++       ++++||
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-------~~~~fD  150 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM-------EPFQAD  150 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC-------CCCCCS
T ss_pred             CCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC-------CCCCcC
Confidence            3679999999999999999987   5899999865 21112112222      89999  9999875       367899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCc--EEEEEe
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG--KVFLQS  344 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG--~l~l~t  344 (416)
                      .|++.+. .+.... .....-...+|+.+.++|||||  .|++.+
T Consensus       151 ~Vvsd~~-~~~~~~-~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          151 TVLCDIG-ESNPTA-AVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             EEEECCC-CCCSCH-HHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             EEEECCC-cCCCch-hhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            9998765 221111 0000001137899999999999  988864

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.97  E-value=9.4e-10  Score=101.60  Aligned_cols=97  Identities=16%  Similarity=0.146  Sum_probs=73.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+.+|||||||+|.++..+++..  .+++|+|++..+++.++++  ...|++++++|+.+.+    + .+++||.|++..
T Consensus        70 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~v~~~~  142 (231)
T 1vbf_A           70 KGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY----E-EEKPYDRVVVWA  142 (231)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC----G-GGCCEEEEEESS
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccc----c-cCCCccEEEECC
Confidence            36799999999999999999985  7999999876666555432  1128999999997631    1 257899999875


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  347 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~  347 (416)
                      +-++              +.+++.++|+|||.+++.+...
T Consensus       143 ~~~~--------------~~~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          143 TAPT--------------LLCKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             BBSS--------------CCHHHHHTEEEEEEEEEEECSS
T ss_pred             cHHH--------------HHHHHHHHcCCCcEEEEEEcCC
Confidence            4332              1246889999999999986543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.97  E-value=1.9e-09  Score=106.82  Aligned_cols=101  Identities=13%  Similarity=0.167  Sum_probs=74.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH---HHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~---~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..+|++ +..+++|+|.+   ..|.++++.+++ ++++++++|+.++     + .++++|.|++
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-----~-~~~~~D~Ivs  122 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-----S-LPEQVDIIIS  122 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-----C-CSSCEEEEEE
T ss_pred             CcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhC-----C-CCCceeEEEE
Confidence            3679999999999999998886 56799999964   345555566677 6899999999876     2 2468999988


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ..+.......      .....+..+.++|||||.+++.
T Consensus       123 ~~~~~~~~~~------~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          123 EPMGYMLFNE------RMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CCCBTTBTTT------SHHHHHHHGGGGEEEEEEEESC
T ss_pred             eCchhcCChH------HHHHHHHHHHhhcCCCeEEEEe
Confidence            6332111100      0136777889999999999854

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.96  E-value=1.3e-09  Score=106.68  Aligned_cols=98  Identities=15%  Similarity=0.144  Sum_probs=75.3

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+|||||||+|.++..+++++|+.+++++|+   +..|.+++...++ ++++|+.+|+.+.    +   ++++|.|++..
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~---~~~~D~v~~~~  241 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE----V---PSNGDIYLLSR  241 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTC----C---CSSCSEEEEES
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCC----C---CCCCCEEEEch
Confidence            8999999999999999999999999999996   3444444444444 5799999998652    2   36799999875


Q ss_pred             CCC-CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          308 PNP-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       308 pdp-w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .-. |. ..      ....++++++++|+|||++++.
T Consensus       242 vl~~~~-~~------~~~~~l~~~~~~L~pgG~l~i~  271 (334)
T 2ip2_A          242 IIGDLD-EA------ASLRLLGNCREAMAGDGRVVVI  271 (334)
T ss_dssp             CGGGCC-HH------HHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hccCCC-HH------HHHHHHHHHHHhcCCCCEEEEE
Confidence            432 21 11      1138899999999999999986

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.96  E-value=1.2e-09  Score=104.16  Aligned_cols=107  Identities=9%  Similarity=-0.090  Sum_probs=82.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--------CCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--------~l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      +..+|||||||+|..+..+++. + .+++++|++..+.+.++++        .-++++++.+|+.+.       . ++||
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~-------~-~~fD  141 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-------I-KKYD  141 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC-------C-CCEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH-------H-hhCC
Confidence            4579999999999999999988 7 8999999877666554321        125799999998765       2 6899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH----HHHHHHHHHHHh
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLE  359 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~----~~~~~~~~~~~~  359 (416)
                      .|++..+||+             .|++.+.++|+|||.+.+.+...    ..+..+.+.+.+
T Consensus       142 ~Ii~d~~dp~-------------~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~  190 (262)
T 2cmg_A          142 LIFCLQEPDI-------------HRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGG  190 (262)
T ss_dssp             EEEESSCCCH-------------HHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHT
T ss_pred             EEEECCCChH-------------HHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHH
Confidence            9999877763             48999999999999999875332    344445555554

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.95  E-value=1.1e-09  Score=109.16  Aligned_cols=97  Identities=19%  Similarity=0.245  Sum_probs=73.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      ...+|||||||+|.++..+++++|+.+++++|+ ..+++.++  ..+|++|+.+|+.+-    +  +++  |.|++.+.-
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~~~~v~~~~~d~~~~----~--p~~--D~v~~~~vl  271 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAP--AFSGVEHLGGDMFDG----V--PKG--DAIFIKWIC  271 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC--CCTTEEEEECCTTTC----C--CCC--SEEEEESCG
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhh--hcCCCEEEecCCCCC----C--CCC--CEEEEechh
Confidence            368999999999999999999999999999998 55555433  236899999998652    2  233  999887543


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .+....      ....+|++++++|+|||+|++.
T Consensus       272 h~~~~~------~~~~~l~~~~~~L~pgG~l~i~  299 (368)
T 3reo_A          272 HDWSDE------HCLKLLKNCYAALPDHGKVIVA  299 (368)
T ss_dssp             GGBCHH------HHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hcCCHH------HHHHHHHHHHHHcCCCCEEEEE
Confidence            211111      1137899999999999999885

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.95  E-value=2e-10  Score=109.07  Aligned_cols=130  Identities=12%  Similarity=0.045  Sum_probs=83.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh------C---------------------------CC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------G---------------------------IT  276 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~------~---------------------------l~  276 (416)
                      .+.+|||||||+|.++..++... -.+++|+|+++.+++.++++      .                           ..
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            35789999999998877666542 23799999877666544321      0                           01


Q ss_pred             cEE-EEEcChhhhhhhhhccCCCceeEEEEECCCCCC-CCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH--H----
Q 014919          277 NGY-FIATNATSTFRSIVASYPGKLILVSIQCPNPDF-NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE--E----  348 (416)
Q Consensus       277 nv~-f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~-k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~--~----  348 (416)
                      ++. ++++|+....+ .-+...++||.|++++...+. ....     -...++++++++|||||.|++.+-..  .    
T Consensus       134 ~i~~~~~~D~~~~~~-~~~~~~~~fD~V~~~~~l~~i~~~~~-----~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g  207 (263)
T 2a14_A          134 AVKRVLKCDVHLGNP-LAPAVLPLADCVLTLLAMECACCSLD-----AYRAALCNLASLLKPGGHLVTTVTLRLPSYMVG  207 (263)
T ss_dssp             HEEEEEECCTTSSST-TTTCCCCCEEEEEEESCHHHHCSSHH-----HHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET
T ss_pred             hhheEEeccccCCCC-CCccccCCCCEeeehHHHHHhcCCHH-----HHHHHHHHHHHHcCCCcEEEEEEeecCccceeC
Confidence            354 89999887411 001125689999998643221 0000     11478999999999999999974110  0    


Q ss_pred             ---------HHHHHHHHHHhCCCCcee
Q 014919          349 ---------VMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       349 ---------~~~~~~~~~~~~~~~~~~  366 (416)
                               -.+++.+.+++.||....
T Consensus       208 ~~~~~~~~~~~~~l~~~l~~aGF~i~~  234 (263)
T 2a14_A          208 KREFSCVALEKGEVEQAVLDAGFDIEQ  234 (263)
T ss_dssp             TEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred             CeEeeccccCHHHHHHHHHHCCCEEEE
Confidence                     134567788888876543

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.94  E-value=8.4e-10  Score=111.36  Aligned_cols=119  Identities=16%  Similarity=0.110  Sum_probs=88.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      +.+|||+|||+|.++..+++++ +..+++|+|++..+.+.+     .++.++++|+...     + ..++||.|+.|  .
T Consensus        40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-----~~~~~~~~D~~~~-----~-~~~~fD~Ii~N--P  106 (421)
T 2ih2_A           40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----PWAEGILADFLLW-----E-PGEAFDLILGN--P  106 (421)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----TTEEEEESCGGGC-----C-CSSCEEEEEEC--C
T ss_pred             CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-----CCCcEEeCChhhc-----C-ccCCCCEEEEC--c
Confidence            5699999999999999999886 678999999876655433     5799999998775     1 35689999998  5


Q ss_pred             CCCCCcc---------h-hhhh-------------hhHHHHHHHHhhccCCcEEEEEeCcH----HHHHHHHHHHHhCCC
Q 014919          310 PDFNRPE---------H-RWRM-------------VQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGK  362 (416)
Q Consensus       310 pw~k~~h---------~-krRl-------------~~~~~l~~i~r~LkpgG~l~l~tD~~----~~~~~~~~~~~~~~~  362 (416)
                      ||....+         . .+..             ....|++.+.++|+|||.+.+.+...    .+.+.+++.+.+.++
T Consensus       107 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~  186 (421)
T 2ih2_A          107 PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK  186 (421)
T ss_dssp             CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred             CccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence            6643222         1 1111             12378999999999999999987543    245667777766554

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.94  E-value=1.1e-08  Score=104.27  Aligned_cols=111  Identities=11%  Similarity=0.208  Sum_probs=81.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..|||+|||+|..+..+|+..|+.+++|+|+    +..+.+++++.++ +++++++|+..+ ...+  .+++||.|++
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~-~~~~--~~~~fD~Vl~  321 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYP-SQWC--GEQQFDRILL  321 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCT-HHHH--TTCCEEEEEE
T ss_pred             CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhc-hhhc--ccCCCCEEEE
Confidence            467999999999999999999998899999996    4455566666676 579999999886 3223  3578999998


Q ss_pred             ECCCC----CCCCcchhhh----------hhhHHHHHHHHhhccCCcEEEEEe
Q 014919          306 QCPNP----DFNRPEHRWR----------MVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       306 ~fpdp----w~k~~h~krR----------l~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +.|-.    +.+.+..+++          -.+..+|+.+.+.|||||+++++|
T Consensus       322 D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          322 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             eCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            74321    1111111110          124588999999999999999986

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.94  E-value=2.6e-09  Score=96.78  Aligned_cols=96  Identities=16%  Similarity=0.089  Sum_probs=71.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ...|||||||+|.+++.++...|+.+|+|+|+++.+    .+++...|.. |+++  +|....    .  +++++|.|.+
T Consensus        50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~----~--~~~~~DvVLa  121 (200)
T 3fzg_A           50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD----V--YKGTYDVVFL  121 (200)
T ss_dssp             CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH----H--TTSEEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc----C--CCCCcChhhH
Confidence            689999999999999999999999999999975554    4555567887 7887  555433    1  4788999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      +-.      -|.-+.  .+..+.++.+.|+|||.++-
T Consensus       122 ~k~------LHlL~~--~~~al~~v~~~L~pggvfIS  150 (200)
T 3fzg_A          122 LKM------LPVLKQ--QDVNILDFLQLFHTQNFVIS  150 (200)
T ss_dssp             ETC------HHHHHH--TTCCHHHHHHTCEEEEEEEE
T ss_pred             hhH------HHhhhh--hHHHHHHHHHHhCCCCEEEE
Confidence            732      222100  01345589999999998765

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.93  E-value=5.5e-09  Score=107.95  Aligned_cols=110  Identities=15%  Similarity=0.189  Sum_probs=80.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      +.+|||+|||+|..+..+|+..+ ...++|+|++.    .+.+++++.++.|+.++++|+..+ ...   .+++||.|++
T Consensus       118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~-~~~---~~~~fD~Il~  193 (479)
T 2frx_A          118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVF-GAA---VPEMFDAILL  193 (479)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTH-HHH---STTCEEEEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHh-hhh---ccccCCEEEE
Confidence            67999999999999999999865 57999999754    445556667889999999999886 221   2578999998


Q ss_pred             ECCCC----CCCCcchh-----h---h--hhhHHHHHHHHhhccCCcEEEEEe
Q 014919          306 QCPNP----DFNRPEHR-----W---R--MVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       306 ~fpdp----w~k~~h~k-----r---R--l~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .-|-.    +.+.+..+     .   +  -.+..+|+++.++|||||+|+++|
T Consensus       194 D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT  246 (479)
T 2frx_A          194 DAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST  246 (479)
T ss_dssp             ECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            63210    00000000     0   0  124688999999999999999976

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.93  E-value=6.7e-10  Score=111.45  Aligned_cols=100  Identities=17%  Similarity=0.083  Sum_probs=72.4

Q ss_pred             CCCeEEEEecc------ccHHHHHHHHh-CCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhh-hhhhccCCCcee
Q 014919          230 AQPLVVDIGSG------NGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF-RSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG------~G~~~~~lA~~-~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~-~~~~~~~~~s~D  301 (416)
                      ...+|||||||      +|..++.++++ +|+.+++|+|++..+.     ...+|++|+++|+.++. ...+...+++||
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-----~~~~rI~fv~GDa~dlpf~~~l~~~d~sFD  290 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-----VDELRIRTIQGDQNDAEFLDRIARRYGPFD  290 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-----GCBTTEEEEECCTTCHHHHHHHHHHHCCEE
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-----hcCCCcEEEEecccccchhhhhhcccCCcc
Confidence            36899999999      77777777776 5999999999876642     23478999999998861 000100157899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .|+++.. .+  ..      -...+|++++++|||||.+++.
T Consensus       291 lVisdgs-H~--~~------d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          291 IVIDDGS-HI--NA------HVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             EEEECSC-CC--HH------HHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEECCc-cc--ch------hHHHHHHHHHHhcCCCeEEEEE
Confidence            9987532 11  01      1247899999999999999985

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.93  E-value=8.8e-10  Score=101.94  Aligned_cols=96  Identities=16%  Similarity=0.290  Sum_probs=72.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC------CCeEEEEchHHHH----HHHHHHhC-----CCcEEEEEcChhhhhhhhhcc
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK------DLNFLGLELVTHC----RDSLQLSG-----ITNGYFIATNATSTFRSIVAS  295 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p------~~~~iGvD~~~~a----~~~a~~~~-----l~nv~f~~~Da~~l~~~~~~~  295 (416)
                      +.+|||||||+|.++..+++..+      ..+++|+|++..+    .+++...+     ..|++++++|+...+    + 
T Consensus        85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~-  159 (227)
T 1r18_A           85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY----P-  159 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC----G-
T ss_pred             CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCC----C-
Confidence            57999999999999999998755      3699999975544    44444444     578999999987631    2 


Q ss_pred             CCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          296 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       296 ~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      ..++||.|++..+-++              +++++.+.|||||++++...
T Consensus       160 ~~~~fD~I~~~~~~~~--------------~~~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          160 PNAPYNAIHVGAAAPD--------------TPTELINQLASGGRLIVPVG  195 (227)
T ss_dssp             GGCSEEEEEECSCBSS--------------CCHHHHHTEEEEEEEEEEES
T ss_pred             cCCCccEEEECCchHH--------------HHHHHHHHhcCCCEEEEEEe
Confidence            2368999998755432              23678999999999999764

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.93  E-value=2.5e-09  Score=106.14  Aligned_cols=100  Identities=12%  Similarity=0.072  Sum_probs=74.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ...+|||||||+|.++..+++++|+.+++..|.   ++.|.+.+...+.+||+|+.+|+...     |  ....|.+++.
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~-----~--~~~~D~~~~~  251 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKD-----P--LPEADLYILA  251 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTS-----C--CCCCSEEEEE
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccC-----C--CCCceEEEee
Confidence            367999999999999999999999999999995   44444444334567899999998643     2  2346998876


Q ss_pred             CCCC-CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          307 CPNP-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       307 fpdp-w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ..-. |+ +.      ....+|+++++.|+|||++++.
T Consensus       252 ~vlh~~~-d~------~~~~iL~~~~~al~pgg~lli~  282 (353)
T 4a6d_A          252 RVLHDWA-DG------KCSHLLERIYHTCKPGGGILVI  282 (353)
T ss_dssp             SSGGGSC-HH------HHHHHHHHHHHHCCTTCEEEEE
T ss_pred             eecccCC-HH------HHHHHHHHHHhhCCCCCEEEEE
Confidence            4321 21 11      0137899999999999999885

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.92  E-value=1.2e-08  Score=102.09  Aligned_cols=121  Identities=9%  Similarity=0.012  Sum_probs=86.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||+| |+|.+++.+|+..|..+++|+|++.    .|.++++..++.|++++++|+.+.++..   .+++||.|+++
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~---~~~~fD~Vi~~  248 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY---ALHKFDTFITD  248 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTT---TSSCBSEEEEC
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhh---ccCCccEEEEC
Confidence            67999999 9999999999998888999999754    4455555668889999999998721210   24689999987


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcE-EEEEeCc----HHHHHHHHHHHH-hCCCCc
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK-VFLQSDI----EEVMLRMKQQFL-EYGKGK  364 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~-l~l~tD~----~~~~~~~~~~~~-~~~~~~  364 (416)
                      .  |+.    ...   ...+++++.++|||||+ +++.+..    ......+.+.+. ..++..
T Consensus       249 ~--p~~----~~~---~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  303 (373)
T 2qm3_A          249 P--PET----LEA---IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVI  303 (373)
T ss_dssp             C--CSS----HHH---HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred             C--CCc----hHH---HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcch
Confidence            3  332    111   25899999999999994 3555543    222244556666 666543

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.91  E-value=2.2e-09  Score=107.00  Aligned_cols=96  Identities=18%  Similarity=0.175  Sum_probs=73.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      ...+|||||||+|.++..+++++|+.+++++|+ ..+++.++  ..+|++|+.+|+.+-    +  +.+  |.|++.+.-
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~~~~v~~~~~D~~~~----~--p~~--D~v~~~~vl  269 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAP--QFPGVTHVGGDMFKE----V--PSG--DTILMKWIL  269 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC--CCTTEEEEECCTTTC----C--CCC--SEEEEESCG
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhh--hcCCeEEEeCCcCCC----C--CCC--CEEEehHHh
Confidence            468999999999999999999999999999998 55554433  246899999998652    2  233  999887543


Q ss_pred             C-CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          310 P-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       310 p-w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      . |. ..      ....+|++++++|||||+|++.
T Consensus       270 h~~~-d~------~~~~~L~~~~~~L~pgG~l~i~  297 (364)
T 3p9c_A          270 HDWS-DQ------HCATLLKNCYDALPAHGKVVLV  297 (364)
T ss_dssp             GGSC-HH------HHHHHHHHHHHHSCTTCEEEEE
T ss_pred             ccCC-HH------HHHHHHHHHHHHcCCCCEEEEE
Confidence            2 21 11      1137899999999999999885

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.90  E-value=1.2e-09  Score=105.75  Aligned_cols=99  Identities=16%  Similarity=0.092  Sum_probs=68.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEE-EEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~-f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+.++||||||||.++..|+++ +..+++|||++..+++.+.++. +++. +...|+..+..+.+  +..+||.+++...
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~-~rv~~~~~~ni~~l~~~~l--~~~~fD~v~~d~s  160 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQD-DRVRSMEQYNFRYAEPVDF--TEGLPSFASIDVS  160 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTC-TTEEEECSCCGGGCCGGGC--TTCCCSEEEECCS
T ss_pred             cccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-cccceecccCceecchhhC--CCCCCCEEEEEee
Confidence            3579999999999999999887 5569999998665554432222 3333 33456655422223  2446999987643


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      -.+.           ..+|.+++|+|||||.+++.
T Consensus       161 f~sl-----------~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          161 FISL-----------NLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             SSCG-----------GGTHHHHHHHSCTTCEEEEE
T ss_pred             HhhH-----------HHHHHHHHHHcCcCCEEEEE
Confidence            2211           36899999999999999885

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.90  E-value=1.9e-09  Score=107.47  Aligned_cols=97  Identities=14%  Similarity=0.191  Sum_probs=74.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      ...+|||||||+|.++..+++++|+.+++++|+ ..+++.+++  .++++|+.+|+.+-    +   +. +|.|++...-
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~~----~---~~-~D~v~~~~~l  277 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP--LSGIEHVGGDMFAS----V---PQ-GDAMILKAVC  277 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--CTTEEEEECCTTTC----C---CC-EEEEEEESSG
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh--cCCCEEEeCCcccC----C---CC-CCEEEEeccc
Confidence            368999999999999999999999999999998 666654432  46899999998652    2   23 8999987543


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .+..+.      ....+|++++++|+|||++++.
T Consensus       278 h~~~d~------~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          278 HNWSDE------KCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             GGSCHH------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCHH------HHHHHHHHHHHhcCCCCEEEEE
Confidence            221111      1137899999999999999986

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.90  E-value=2.3e-08  Score=100.77  Aligned_cols=124  Identities=24%  Similarity=0.259  Sum_probs=83.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||+|||+|.+++.+|+.  ...++|+|++..++    ++++.+++.+ ++.++|+.++++.    ..+.||.|+++
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l~~----~~~~fD~Ii~d  287 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTLRG----LEGPFHHVLLD  287 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHHHT----CCCCEEEEEEC
T ss_pred             CCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHHHH----hcCCCCEEEEC
Confidence            689999999999999999987  34599999865554    4455567763 5779999887532    13449999986


Q ss_pred             CCCCCC-CCcchhhhh--hhHHHHHHHHhhccCCcEEEEEeCc-----HHHHHHHHHHHHhCCCC
Q 014919          307 CPNPDF-NRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       307 fpdpw~-k~~h~krRl--~~~~~l~~i~r~LkpgG~l~l~tD~-----~~~~~~~~~~~~~~~~~  363 (416)
                        .|.+ +.+....+.  .+..+++.+.++|+|||.|++.+..     +.+.+.+.+.+.+.+..
T Consensus       288 --pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~  350 (393)
T 4dmg_A          288 --PPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRR  350 (393)
T ss_dssp             --CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCC
T ss_pred             --CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCe
Confidence              2332 222211111  1358899999999999999976543     22333344455555554

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.90  E-value=7.3e-09  Score=106.18  Aligned_cols=112  Identities=21%  Similarity=0.276  Sum_probs=81.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC-CeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..|||+|||+|..+..+|+..++ .+++|+|++..    +.+++++.+++|++++++|+..+ +..+  .+++||.|+
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~-~~~~--~~~~fD~Vl  335 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKA-PEII--GEEVADKVL  335 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCC-SSSS--CSSCEEEEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhc-chhh--ccCCCCEEE
Confidence            4679999999999999999999876 89999997544    44555566888999999999876 2112  347899999


Q ss_pred             EECCCC----CCCCcchhh--------hh--hhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNP----DFNRPEHRW--------RM--VQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdp----w~k~~h~kr--------Rl--~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +.-|-.    +.+.+..++        ++  .+..+|+.+.+.|||||.+++.|
T Consensus       336 ~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t  389 (450)
T 2yxl_A          336 LDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT  389 (450)
T ss_dssp             EECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            863311    111111111        11  23688999999999999999875

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.89  E-value=6.8e-09  Score=106.63  Aligned_cols=110  Identities=15%  Similarity=0.082  Sum_probs=81.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC-CeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+|||+|..+..+|+..++ ..++|+|++.    .+.+++++.|+. +.++++|+.++ ...+   +++||.|+
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l-~~~~---~~~FD~Il  175 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRAL-AEAF---GTYFHRVL  175 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHH-HHHH---CSCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHh-hhhc---cccCCEEE
Confidence            4689999999999999999998764 7999999754    445556667888 99999999887 3222   57899999


Q ss_pred             EECCCC----CCCCcchhhh----------hhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNP----DFNRPEHRWR----------MVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdp----w~k~~h~krR----------l~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ++-|-.    +.+.+..+.+          -.+.++|+.+.+.|||||+|+++|
T Consensus       176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT  229 (464)
T 3m6w_A          176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST  229 (464)
T ss_dssp             EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            873310    1111111110          124689999999999999999875

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.87  E-value=2.1e-08  Score=96.16  Aligned_cols=129  Identities=12%  Similarity=0.046  Sum_probs=81.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch-HHHHHHHHH---------HhCC-----CcEEEEEcChhhhhhhhhc
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-VTHCRDSLQ---------LSGI-----TNGYFIATNATSTFRSIVA  294 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~-~~~a~~~a~---------~~~l-----~nv~f~~~Da~~l~~~~~~  294 (416)
                      .+.+|||||||+|.+++.+|+.. ..+++|+|+ +..+++.++         .+++     .|+++...|..+......+
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            35799999999999999998863 458999999 666655443         2233     2788886654332111110


Q ss_pred             -cCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhcc---C--CcEEEEEeCcHH-----HHHHHHHHHHhCC-C
Q 014919          295 -SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV---H--DGKVFLQSDIEE-----VMLRMKQQFLEYG-K  362 (416)
Q Consensus       295 -~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~Lk---p--gG~l~l~tD~~~-----~~~~~~~~~~~~~-~  362 (416)
                       ..+++||.|++.  |..+...      ....+++.+.++|+   |  ||.+++......     ......+.+++.| +
T Consensus       158 ~~~~~~fD~Ii~~--dvl~~~~------~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f  229 (281)
T 3bzb_A          158 CTGLQRFQVVLLA--DLLSFHQ------AHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGAL  229 (281)
T ss_dssp             HHSCSSBSEEEEE--SCCSCGG------GHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTE
T ss_pred             hccCCCCCEEEEe--CcccChH------HHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCE
Confidence             025789999875  3332111      12588999999999   9  998877644321     1234556677888 7


Q ss_pred             Cceee
Q 014919          363 GKLVL  367 (416)
Q Consensus       363 ~~~~~  367 (416)
                      .....
T Consensus       230 ~v~~~  234 (281)
T 3bzb_A          230 IAEPW  234 (281)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            64433

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.87  E-value=3e-09  Score=105.21  Aligned_cols=97  Identities=13%  Similarity=0.201  Sum_probs=74.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      ...+|||||||+|.++..+++++|+.+++++|+ ..+++.+++  .++++|+.+|+.+-    +   + .+|.|++...-
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~~----~---p-~~D~v~~~~~l  256 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG--SNNLTYVGGDMFTS----I---P-NADAVLLKYIL  256 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--BTTEEEEECCTTTC----C---C-CCSEEEEESCG
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc--CCCcEEEeccccCC----C---C-CccEEEeehhh
Confidence            358999999999999999999999999999999 766665433  46799999998542    2   2 39999987543


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccC---CcEEEEE
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVH---DGKVFLQ  343 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~Lkp---gG~l~l~  343 (416)
                      ....+.      ....+|++++++|||   ||++++.
T Consensus       257 h~~~d~------~~~~~l~~~~~~L~p~~~gG~l~i~  287 (352)
T 1fp2_A          257 HNWTDK------DCLRILKKCKEAVTNDGKRGKVTII  287 (352)
T ss_dssp             GGSCHH------HHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             ccCCHH------HHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            211111      113789999999999   9999885

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.86  E-value=5.5e-09  Score=92.50  Aligned_cols=107  Identities=14%  Similarity=0.099  Sum_probs=78.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      .+..|||||||.                +++|++..+++.+++....+++++++|+.++ + ..++++++||.|++++.-
T Consensus        12 ~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~-~-~~~~~~~~fD~V~~~~~l   73 (176)
T 2ld4_A           12 AGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQL-L-QSAHKESSFDIILSGLVP   73 (176)
T ss_dssp             TTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGG-G-GGCCCSSCEEEEEECCST
T ss_pred             CCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcC-c-cccCCCCCEeEEEECChh
Confidence            478999999996                2489888888877665445799999999886 2 101157899999988765


Q ss_pred             CCC-CCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH---------HHHHHHHHHHhCCC
Q 014919          310 PDF-NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE---------VMLRMKQQFLEYGK  362 (416)
Q Consensus       310 pw~-k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~---------~~~~~~~~~~~~~~  362 (416)
                      .|. .+.        ..++++++|+|||||+|++......         ..+++.+.+++.||
T Consensus        74 ~~~~~~~--------~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           74 GSTTLHS--------AEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             TCCCCCC--------HHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             hhcccCH--------HHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence            554 221        4899999999999999999632111         14567788899998

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.86  E-value=3.3e-09  Score=104.78  Aligned_cols=101  Identities=17%  Similarity=0.229  Sum_probs=73.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH-HHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD-SLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~-~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      ...+|||||||+|.++..+++++|+.+++++|+.....+ +++..+. ++++|+.+|+.+.    +   + ++|.|++..
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~----~---p-~~D~v~~~~  255 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLRE----V---P-HADVHVLKR  255 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTC----C---C-CCSEEEEES
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCC----C---C-CCcEEEEeh
Confidence            468999999999999999999999999999998433221 1111233 4699999998621    1   3 899999875


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .-.+..+.      ....+|++++++|||||+|++..
T Consensus       256 vlh~~~d~------~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          256 ILHNWGDE------DSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             CGGGSCHH------HHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             hccCCCHH------HHHHHHHHHHHhcCCCCEEEEEE
Confidence            43211111      11388999999999999998853

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.85  E-value=2.3e-08  Score=102.02  Aligned_cols=121  Identities=17%  Similarity=0.181  Sum_probs=86.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..|||+|||+|.+++.||+.  ..+++|+|++..    |.++++.++++|++|+++|+.+.+.. +++.+++||.|++
T Consensus       286 ~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~-~~~~~~~fD~Vv~  362 (433)
T 1uwv_A          286 PEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK-QPWAKNGFDKVLL  362 (433)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS-SGGGTTCCSEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh-hhhhcCCCCEEEE
Confidence            3579999999999999999988  679999997554    44555567888999999999875322 1223578999988


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~  366 (416)
                      +-  |. ...        .++++.+.+ ++|++.++++.+...+.+.. ..+.+.++....
T Consensus       363 dP--Pr-~g~--------~~~~~~l~~-~~p~~ivyvsc~p~tlard~-~~l~~~Gy~~~~  410 (433)
T 1uwv_A          363 DP--AR-AGA--------AGVMQQIIK-LEPIRIVYVSCNPATLARDS-EALLKAGYTIAR  410 (433)
T ss_dssp             CC--CT-TCC--------HHHHHHHHH-HCCSEEEEEESCHHHHHHHH-HHHHHTTCEEEE
T ss_pred             CC--CC-ccH--------HHHHHHHHh-cCCCeEEEEECChHHHHhhH-HHHHHCCcEEEE
Confidence            52  22 111        145555543 79999999988776666654 556667776543

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.85  E-value=2.4e-09  Score=103.59  Aligned_cols=117  Identities=9%  Similarity=0.040  Sum_probs=79.7

Q ss_pred             CCCeEEEEec------cccHHHHHHHHhCC-CCeEEEEchHHHHHHHHHHhCCCcEEE-EEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGS------GNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQLSGITNGYF-IATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGC------G~G~~~~~lA~~~p-~~~~iGvD~~~~a~~~a~~~~l~nv~f-~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      .+.+||||||      |+|.  ..+++..| +.+++|+|++..         ++|++| +++|+.++     + .+++||
T Consensus        63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~---------v~~v~~~i~gD~~~~-----~-~~~~fD  125 (290)
T 2xyq_A           63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF---------VSDADSTLIGDCATV-----H-TANKWD  125 (290)
T ss_dssp             TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC---------BCSSSEEEESCGGGC-----C-CSSCEE
T ss_pred             CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC---------CCCCEEEEECccccC-----C-ccCccc
Confidence            4679999999      5576  55677776 689999999764         368899 99999875     2 246899


Q ss_pred             EEEEECCCCCCC--C-cchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCC
Q 014919          302 LVSIQCPNPDFN--R-PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       302 ~v~~~fpdpw~k--~-~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~  363 (416)
                      .|+++.+.++..  . .+.......+.+++++.++|||||.|++..-.......+.+.+++++|.
T Consensus       126 ~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~  190 (290)
T 2xyq_A          126 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWW  190 (290)
T ss_dssp             EEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEE
T ss_pred             EEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCc
Confidence            999876544421  1 1111111235789999999999999999642222223566667776653

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.84  E-value=3.9e-09  Score=98.78  Aligned_cols=99  Identities=17%  Similarity=0.106  Sum_probs=59.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEE-EEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYF-IATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f-~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+.+|||||||+|.++..|+++ ...+++|+|++..+++.+.++. +++.. ...++..+....++  ...+|.+.+...
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~D~v  112 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSD-ERVVVMEQFNFRNAVLADFE--QGRPSFTSIDVS  112 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTC-TTEEEECSCCGGGCCGGGCC--SCCCSEEEECCS
T ss_pred             CCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhC-ccccccccceEEEeCHhHcC--cCCCCEEEEEEE
Confidence            3579999999999999999987 3359999998765555443322 22222 22233222111111  112343333211


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                        +.. .        ..++++++|+|||||.+++.
T Consensus       113 --~~~-l--------~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          113 --FIS-L--------DLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             --SSC-G--------GGTHHHHHHHSCTTCEEEEE
T ss_pred             --hhh-H--------HHHHHHHHHhccCCCEEEEE
Confidence              110 0        36899999999999999986

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.84  E-value=6.3e-09  Score=102.59  Aligned_cols=107  Identities=15%  Similarity=0.252  Sum_probs=79.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+|||+|.+++. |+  +..+++|+|++..+    .++++.+++ +|++++++|+.++       . ++||.|+
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~-------~-~~fD~Vi  263 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV-------D-VKGNRVI  263 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC-------C-CCEEEEE
T ss_pred             CCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh-------c-CCCcEEE
Confidence            368999999999999999 87  47899999975544    445556677 5899999999876       2 6899998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhC
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY  360 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~  360 (416)
                      ++.  |..    .      ..+++.+.++|+|||.+++.+-... .+...+.+.+.
T Consensus       264 ~dp--P~~----~------~~~l~~~~~~L~~gG~l~~~~~~~~-~~~~~~~l~~~  306 (336)
T 2yx1_A          264 MNL--PKF----A------HKFIDKALDIVEEGGVIHYYTIGKD-FDKAIKLFEKK  306 (336)
T ss_dssp             ECC--TTT----G------GGGHHHHHHHEEEEEEEEEEEEESS-SHHHHHHHHHH
T ss_pred             ECC--cHh----H------HHHHHHHHHHcCCCCEEEEEEeecC-chHHHHHHHHh
Confidence            852  211    1      2688999999999999988644333 44455555554

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.84  E-value=1.2e-08  Score=97.09  Aligned_cols=126  Identities=15%  Similarity=0.124  Sum_probs=85.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-------CCC-----CeEEEEchH-------H-----------HHHHHHHH-------
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-------RKD-----LNFLGLELV-------T-----------HCRDSLQL-------  272 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-------~p~-----~~~iGvD~~-------~-----------~a~~~a~~-------  272 (416)
                      ...+|||||||+|..++.+++.       .|+     .+|+++|..       .           .|.+..+.       
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            3579999999999999887764       674     589999941       1           12222221       


Q ss_pred             -------hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          273 -------SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       273 -------~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                             .+..|++++.+|+.+.++..-......||.|++   |+|.+++++  ++.++++|+.++++|+|||+|..-|-
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~ifl---D~fsp~~~p--~lw~~~~l~~l~~~L~pGG~l~tysa  214 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFL---DGFAPAKNP--DMWTQNLFNAMARLARPGGTLATFTS  214 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEE---CSSCTTTCG--GGCCHHHHHHHHHHEEEEEEEEESCC
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEE---CCCCcccCh--hhcCHHHHHHHHHHcCCCcEEEEEeC
Confidence                   123578999999999755321000137999865   888665554  46678999999999999999886443


Q ss_pred             cHHHHHHHHHHHHhCCCCc
Q 014919          346 IEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~  364 (416)
                      ..    .+.+.+.+.||..
T Consensus       215 a~----~vrr~L~~aGF~v  229 (257)
T 2qy6_A          215 AG----FVRRGLQEAGFTM  229 (257)
T ss_dssp             BH----HHHHHHHHHTEEE
T ss_pred             CH----HHHHHHHHCCCEE
Confidence            33    3455667778764

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.83  E-value=3.2e-09  Score=103.47  Aligned_cols=102  Identities=12%  Similarity=0.060  Sum_probs=69.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHH--HHhCCCcEEEEEc-ChhhhhhhhhccCCCceeEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSL--QLSGITNGYFIAT-NATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a--~~~~l~nv~f~~~-Da~~l~~~~~~~~~~s~D~v  303 (416)
                      +.+|||||||+|.++..+|++   .+++|+|+    +...+...  +..+.+++.|+++ |+..+       ++++||.|
T Consensus        83 g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l-------~~~~fD~V  152 (305)
T 2p41_A           83 EGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFI-------PPERCDTL  152 (305)
T ss_dssp             CEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTS-------CCCCCSEE
T ss_pred             CCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccC-------CcCCCCEE
Confidence            579999999999999999987   47999998    33111111  1122367999999 88765       35689999


Q ss_pred             EEECCCCCCCCcchhh-hhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          304 SIQCPNPDFNRPEHRW-RMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       304 ~~~fpdpw~k~~h~kr-Rl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      ++.++..   ..|+-. .......|+.+.++|||||.|.+.+-
T Consensus       153 ~sd~~~~---~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~  192 (305)
T 2p41_A          153 LCDIGES---SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL  192 (305)
T ss_dssp             EECCCCC---CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred             EECCccc---cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            9875422   111100 00001478889999999999998653

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.83  E-value=5.6e-09  Score=100.39  Aligned_cols=95  Identities=12%  Similarity=0.083  Sum_probs=75.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ++.+|||+|||+|.+++.+|+. ...+++++|++..    +.++++.++++| ++++++|+.++.      ..+.+|.|+
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~------~~~~~D~Vi  197 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP------GENIADRIL  197 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC------CCSCEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc------cccCCCEEE
Confidence            4789999999999999999987 4578999997554    455566778865 999999998762      367899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ++.|  .  ..        ..|+..+.++|||||.+++-
T Consensus       198 ~~~p--~--~~--------~~~l~~a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          198 MGYV--V--RT--------HEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             ECCC--S--SG--------GGGHHHHHHHEEEEEEEEEE
T ss_pred             ECCC--C--cH--------HHHHHHHHHHcCCCCEEEEE
Confidence            8733  1  11        26888899999999999764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.81  E-value=2.7e-08  Score=107.39  Aligned_cols=126  Identities=13%  Similarity=0.174  Sum_probs=87.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCC--cEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~--nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||+|||+|.+++.+|+.. ..+++++|++..++    ++++.++++  |++++++|+.++++.    ..++||.|
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~----~~~~fD~I  613 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE----ANEQFDLI  613 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH----CCCCEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh----cCCCccEE
Confidence            36799999999999999999853 34799999865554    445566776  799999999886432    35789999


Q ss_pred             EEECCCCCCCCcch-----hhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCC
Q 014919          304 SIQCPNPDFNRPEH-----RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       304 ~~~fpdpw~k~~h~-----krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~  363 (416)
                      +++  .|.+.....     ...-.+.++++.+.++|+|||.|++.+....+.. -.+.+.+.++.
T Consensus       614 i~D--PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~-~~~~l~~~g~~  675 (703)
T 3v97_A          614 FID--PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRM-DLDGLAKLGLK  675 (703)
T ss_dssp             EEC--CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCC-CHHHHHHTTEE
T ss_pred             EEC--CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc-CHHHHHHcCCc
Confidence            886  233221100     0011246889999999999999999886532221 24566776654

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.81  E-value=6.2e-09  Score=107.59  Aligned_cols=100  Identities=14%  Similarity=0.177  Sum_probs=72.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH---HHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT---HCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~---~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.+++.+|+ .+..+++|+|++.   .|.++++.+++ ++++++++|+.++     + .+++||.|++
T Consensus       158 ~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~-----~-~~~~fD~Ivs  230 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-----S-LPEQVDIIIS  230 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTC-----C-CSSCEEEEEC
T ss_pred             CCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhC-----c-cCCCeEEEEE
Confidence            357999999999999998887 5778999999765   34444556677 5899999999875     2 2468999987


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      +.+.-.....      -....+..+.++|||||.+++
T Consensus       231 ~~~~~~~~~e------~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          231 EPMGYMLFNE------RMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             CCCHHHHTCH------HHHHHHHHGGGGEEEEEEEES
T ss_pred             eCchHhcCcH------HHHHHHHHHHHhcCCCCEEEE
Confidence            5321000000      013566788999999999985

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.80  E-value=2.1e-08  Score=100.37  Aligned_cols=100  Identities=14%  Similarity=0.243  Sum_probs=73.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||||||+|.+++..|++ ...+|+|||.   ...|++.++.+++. +|+++++|++++     . .++.+|.|+..
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~-----~-lpe~~DvivsE  156 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQA-GARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETV-----E-LPEQVDAIVSE  156 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC-----C-CSSCEEEEECC
T ss_pred             CCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeee-----c-CCccccEEEee
Confidence            579999999999888766665 3468999995   46677777788886 599999999887     2 25789999764


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      ..+...  .+.  . ..+.++....|+|||||.++-
T Consensus       157 ~~~~~l--~~e--~-~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          157 WMGYGL--LHE--S-MLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             CCBTTB--TTT--C-SHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccc--ccc--c-hhhhHHHHHHhhCCCCceECC
Confidence            222111  010  1 235888889999999998653

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.80  E-value=4.3e-08  Score=99.74  Aligned_cols=104  Identities=16%  Similarity=0.234  Sum_probs=76.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|||+|.+++.+|+.  ..+++|+|++..+    .++++.++++ ++|+++|+.+++       +.+||.|++
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~-------~~~fD~Vv~  359 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVS-------VKGFDTVIV  359 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCC-------CTTCSEEEE
T ss_pred             CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcC-------ccCCCEEEE
Confidence            3679999999999999999987  4699999975544    4455556777 999999998762       228999988


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHH
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMK  354 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~  354 (416)
                      +.  |. ..       ..+.+++.+. .|+|+|.++++++...+.+.+.
T Consensus       360 dP--Pr-~g-------~~~~~~~~l~-~l~p~givyvsc~p~tlarDl~  397 (425)
T 2jjq_A          360 DP--PR-AG-------LHPRLVKRLN-REKPGVIVYVSCNPETFARDVK  397 (425)
T ss_dssp             CC--CT-TC-------SCHHHHHHHH-HHCCSEEEEEESCHHHHHHHHH
T ss_pred             cC--Cc-cc-------hHHHHHHHHH-hcCCCcEEEEECChHHHHhHHh
Confidence            52  21 11       1135666665 5999999999987766655443

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.79  E-value=2.4e-08  Score=95.62  Aligned_cols=125  Identities=10%  Similarity=0.062  Sum_probs=80.4

Q ss_pred             CCeEEEEeccc--cHHHHHHHH-hCCCCeEEEEchHHHHHHHHHH----hCCCcEEEEEcChhhhhhhhhccC--CCcee
Q 014919          231 QPLVVDIGSGN--GLFLLGMAR-KRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASY--PGKLI  301 (416)
Q Consensus       231 ~~~vLDIGCG~--G~~~~~lA~-~~p~~~~iGvD~~~~a~~~a~~----~~l~nv~f~~~Da~~l~~~~~~~~--~~s~D  301 (416)
                      ...+||||||+  +.++..+|+ ..|+++++++|.+..+++.++.    .+..+++|+++|+.+. ...++.+  .+++|
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~-~~~l~~~~~~~~~D  157 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDP-ASILDAPELRDTLD  157 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCH-HHHHTCHHHHTTCC
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccCh-hhhhcccccccccC
Confidence            46899999997  445666665 5799999999976665554432    2234799999999885 2111100  12343


Q ss_pred             -----EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe---Cc-HHHHHHHHHHHHhCC
Q 014919          302 -----LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---DI-EEVMLRMKQQFLEYG  361 (416)
Q Consensus       302 -----~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t---D~-~~~~~~~~~~~~~~~  361 (416)
                           .|+++..-.|......     ...+++++++.|+|||+|.+++   |. ....+.+.+.+...+
T Consensus       158 ~~~p~av~~~avLH~l~d~~~-----p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g  221 (277)
T 3giw_A          158 LTRPVALTVIAIVHFVLDEDD-----AVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARN  221 (277)
T ss_dssp             TTSCCEEEEESCGGGSCGGGC-----HHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTT
T ss_pred             cCCcchHHhhhhHhcCCchhh-----HHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcC
Confidence                 4667766666433210     1378999999999999999873   22 234455555555544

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.78  E-value=2.9e-08  Score=99.46  Aligned_cols=98  Identities=10%  Similarity=0.088  Sum_probs=78.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHh---------------CCCcEEEEEcChhhhhhh
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLS---------------GITNGYFIATNATSTFRS  291 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~---------------~l~nv~f~~~Da~~l~~~  291 (416)
                      +.+|||+|||+|..++.+|++.+..+++++|++..    +.++++.+               +++|++++++|+..++..
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~  127 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  127 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence            68899999999999999999988889999997554    44555666               777899999999887432


Q ss_pred             hhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          292 IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       292 ~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                          ..++||.|++   ||...         ...+++.+.+.|+|||.+++..
T Consensus       128 ----~~~~fD~I~l---DP~~~---------~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          128 ----RHRYFHFIDL---DPFGS---------PMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             ----STTCEEEEEE---CCSSC---------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----ccCCCCEEEe---CCCCC---------HHHHHHHHHHhcCCCCEEEEEe
Confidence                1457999985   55321         1378999999999999988863

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.75  E-value=1.1e-08  Score=101.36  Aligned_cols=96  Identities=20%  Similarity=0.272  Sum_probs=73.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      ..+|||||||+|.++..+++++|+.+++++|+ ..+++.++  ..++++|+.+|+.+-    +   + ++|.|++...-.
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~~~~v~~~~~d~~~~----~---~-~~D~v~~~~vlh  262 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLT--GNENLNFVGGDMFKS----I---P-SADAVLLKWVLH  262 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCC--CCSSEEEEECCTTTC----C---C-CCSEEEEESCGG
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcc--cCCCcEEEeCccCCC----C---C-CceEEEEccccc
Confidence            57999999999999999999999999999998 45554433  246799999998652    2   2 489999885433


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccC---CcEEEEE
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVH---DGKVFLQ  343 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~Lkp---gG~l~l~  343 (416)
                      +..+.      ....+|++++++|+|   ||++++.
T Consensus       263 ~~~d~------~~~~~l~~~~~~L~p~~~gG~l~i~  292 (358)
T 1zg3_A          263 DWNDE------QSLKILKNSKEAISHKGKDGKVIII  292 (358)
T ss_dssp             GSCHH------HHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred             CCCHH------HHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            21111      113889999999999   9999885

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.72  E-value=7.6e-08  Score=95.99  Aligned_cols=111  Identities=15%  Similarity=0.173  Sum_probs=73.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccC----------
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASY----------  296 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~----------  296 (416)
                      +..|||+|||+|.+++.+|+.  ..+++|+|++..    |.++++.++++|++|+++|+.++++......          
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~  291 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL  291 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence            467999999999999999986  358999997554    4555566788999999999988754321000          


Q ss_pred             -CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe-CcHHHHHHHHHHHH
Q 014919          297 -PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFL  358 (416)
Q Consensus       297 -~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t-D~~~~~~~~~~~~~  358 (416)
                       +.+||.|++.  .|..            .+..++.+.|+++|.+++.+ +...+.+.. ..+.
T Consensus       292 ~~~~fD~Vv~d--PPr~------------g~~~~~~~~l~~~g~ivyvsc~p~t~ard~-~~l~  340 (369)
T 3bt7_A          292 KSYQCETIFVD--PPRS------------GLDSETEKMVQAYPRILYISCNPETLCKNL-ETLS  340 (369)
T ss_dssp             GGCCEEEEEEC--CCTT------------CCCHHHHHHHTTSSEEEEEESCHHHHHHHH-HHHH
T ss_pred             ccCCCCEEEEC--cCcc------------ccHHHHHHHHhCCCEEEEEECCHHHHHHHH-HHHh
Confidence             1379999874  2211            12234555666777766654 444444433 3444

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.72  E-value=2.1e-08  Score=96.52  Aligned_cols=73  Identities=14%  Similarity=0.157  Sum_probs=56.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----hCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..|||||||+|.++..|++..  .+++|+|++..+++.+++    .+. +|++++++|+..+     +  ..++|.|+
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~-----~--~~~fD~vv   98 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT-----D--LPFFDTCV   98 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS-----C--CCCCSEEE
T ss_pred             CCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc-----c--chhhcEEE
Confidence            36799999999999999999984  589999986655554433    333 5899999999876     2  23799999


Q ss_pred             EECCCCC
Q 014919          305 IQCPNPD  311 (416)
Q Consensus       305 ~~fpdpw  311 (416)
                      .+.|..|
T Consensus        99 ~nlpy~~  105 (285)
T 1zq9_A           99 ANLPYQI  105 (285)
T ss_dssp             EECCGGG
T ss_pred             EecCccc
Confidence            9976554

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.69  E-value=7.5e-08  Score=96.73  Aligned_cols=111  Identities=16%  Similarity=0.210  Sum_probs=79.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC--------------------------------------CCeEEEEchHH----HHHH
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK--------------------------------------DLNFLGLELVT----HCRD  268 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p--------------------------------------~~~~iGvD~~~----~a~~  268 (416)
                      +..+||.+||+|.+++.+|....                                      ..+++|+|++.    .|.+
T Consensus       196 ~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~  275 (385)
T 3ldu_A          196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE  275 (385)
T ss_dssp             TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHH
Confidence            57899999999999999987632                                      25799999744    4555


Q ss_pred             HHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccC--CcEEEEEeC
Q 014919          269 SLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH--DGKVFLQSD  345 (416)
Q Consensus       269 ~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~Lkp--gG~l~l~tD  345 (416)
                      +++.+++. +++|.++|+.++     + .+.++|.|++|  .|+......+..  ...+.+++.+.||+  |+.+++.|.
T Consensus       276 Na~~~gl~~~i~~~~~D~~~l-----~-~~~~~D~Iv~N--PPyg~rl~~~~~--l~~ly~~lg~~lk~~~g~~~~iit~  345 (385)
T 3ldu_A          276 NAEIAGVDEYIEFNVGDATQF-----K-SEDEFGFIITN--PPYGERLEDKDS--VKQLYKELGYAFRKLKNWSYYLITS  345 (385)
T ss_dssp             HHHHHTCGGGEEEEECCGGGC-----C-CSCBSCEEEEC--CCCCCSHHHHHH--HHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred             HHHHcCCCCceEEEECChhhc-----C-cCCCCcEEEEC--CCCcCccCCHHH--HHHHHHHHHHHHhhCCCCEEEEEEC
Confidence            56667876 799999999886     2 24689999987  455322111111  13566667777776  899988887


Q ss_pred             cHHHHH
Q 014919          346 IEEVML  351 (416)
Q Consensus       346 ~~~~~~  351 (416)
                      +..+..
T Consensus       346 ~~~l~~  351 (385)
T 3ldu_A          346 YEDFEY  351 (385)
T ss_dssp             CTTHHH
T ss_pred             CHHHHH
Confidence            766543

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.68  E-value=1.2e-07  Score=95.19  Aligned_cols=111  Identities=13%  Similarity=0.083  Sum_probs=78.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC--------------------------------------CeEEEEchHH----HHHH
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKD--------------------------------------LNFLGLELVT----HCRD  268 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~--------------------------------------~~~iGvD~~~----~a~~  268 (416)
                      +..+||.+||+|.++++.|....+                                      .+++|+|++.    .|.+
T Consensus       195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~  274 (384)
T 3ldg_A          195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK  274 (384)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH
Confidence            578999999999999998875433                                      5699999744    4555


Q ss_pred             HHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccC--CcEEEEEeC
Q 014919          269 SLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH--DGKVFLQSD  345 (416)
Q Consensus       269 ~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~Lkp--gG~l~l~tD  345 (416)
                      +++..++.+ ++|+++|+.++     + .+.++|.|++|  .||......+..  ...+.+.+.+.||+  ||.+++.|.
T Consensus       275 Na~~~gl~~~I~~~~~D~~~l-----~-~~~~fD~Iv~N--PPYG~rl~~~~~--l~~ly~~lg~~lk~~~g~~~~iit~  344 (384)
T 3ldg_A          275 NAREVGLEDVVKLKQMRLQDF-----K-TNKINGVLISN--PPYGERLLDDKA--VDILYNEMGETFAPLKTWSQFILTN  344 (384)
T ss_dssp             HHHHTTCTTTEEEEECCGGGC-----C-CCCCSCEEEEC--CCCTTTTSCHHH--HHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred             HHHHcCCCCceEEEECChHHC-----C-ccCCcCEEEEC--CchhhccCCHHH--HHHHHHHHHHHHhhCCCcEEEEEEC
Confidence            666678864 99999999887     2 24589999988  455322111111  13566667777776  999998887


Q ss_pred             cHHHHH
Q 014919          346 IEEVML  351 (416)
Q Consensus       346 ~~~~~~  351 (416)
                      +..+..
T Consensus       345 ~~~l~~  350 (384)
T 3ldg_A          345 DTDFEQ  350 (384)
T ss_dssp             CTTHHH
T ss_pred             CHHHHH
Confidence            766543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.68  E-value=8.8e-08  Score=96.49  Aligned_cols=111  Identities=15%  Similarity=0.104  Sum_probs=77.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC--------------------------------------CeEEEEchHH----HHHH
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKD--------------------------------------LNFLGLELVT----HCRD  268 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~--------------------------------------~~~iGvD~~~----~a~~  268 (416)
                      +..+||.+||+|.+++++|....+                                      .+++|+|++.    .|.+
T Consensus       202 ~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~  281 (393)
T 3k0b_A          202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ  281 (393)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHH
Confidence            578999999999999998876433                                      5699999744    4555


Q ss_pred             HHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccC--CcEEEEEeC
Q 014919          269 SLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH--DGKVFLQSD  345 (416)
Q Consensus       269 ~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~Lkp--gG~l~l~tD  345 (416)
                      +++.+++. +++|+++|+.++     + .+.++|.|++|  .||......+..  ...+.+.+.+.||+  ||.+++.|.
T Consensus       282 Na~~~gl~~~I~~~~~D~~~~-----~-~~~~fD~Iv~N--PPYg~rl~~~~~--l~~ly~~lg~~lk~~~g~~~~iit~  351 (393)
T 3k0b_A          282 NAVEAGLGDLITFRQLQVADF-----Q-TEDEYGVVVAN--PPYGERLEDEEA--VRQLYREMGIVYKRMPTWSVYVLTS  351 (393)
T ss_dssp             HHHHTTCTTCSEEEECCGGGC-----C-CCCCSCEEEEC--CCCCCSHHHHHH--HHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             HHHHcCCCCceEEEECChHhC-----C-CCCCCCEEEEC--CCCccccCCchh--HHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            66667876 499999999886     2 24689999987  455322111111  13455666666666  999998887


Q ss_pred             cHHHHH
Q 014919          346 IEEVML  351 (416)
Q Consensus       346 ~~~~~~  351 (416)
                      +..+..
T Consensus       352 ~~~l~~  357 (393)
T 3k0b_A          352 YELFEE  357 (393)
T ss_dssp             CTTHHH
T ss_pred             CHHHHH
Confidence            776543

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.67  E-value=3.8e-08  Score=97.08  Aligned_cols=125  Identities=10%  Similarity=0.091  Sum_probs=85.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC-----CeEEEEchHHHHHH----HHHHhCCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKD-----LNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~-----~~~iGvD~~~~a~~----~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      ..+|||+|||+|.++..+++..+.     .+++|+|++..+.+    ++...++ ++.++++|+....      ..+.||
T Consensus       131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~------~~~~fD  203 (344)
T 2f8l_A          131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL------LVDPVD  203 (344)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC------CCCCEE
T ss_pred             CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc------ccCCcc
Confidence            578999999999999999988764     78999997555444    3344566 7899999986531      357899


Q ss_pred             EEEEECCCCCCCCcchhhh----------hhhHHHHHHHHhhccCCcEEEEEeCcH----HHHHHHHHHHHhCCC
Q 014919          302 LVSIQCPNPDFNRPEHRWR----------MVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGK  362 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krR----------l~~~~~l~~i~r~LkpgG~l~l~tD~~----~~~~~~~~~~~~~~~  362 (416)
                      .|+.|.|-.+.......+|          -.+..|++.+.+.|+|||++.+.+.+.    .....+++.+.+.++
T Consensus       204 ~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~  278 (344)
T 2f8l_A          204 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGH  278 (344)
T ss_dssp             EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEE
T ss_pred             EEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCe
Confidence            9999944222111100000          012368999999999999999886221    224556666666544

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.60  E-value=1.6e-07  Score=94.51  Aligned_cols=99  Identities=15%  Similarity=0.175  Sum_probs=77.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC-CeEEEEchHHH----HHHHHHHhCCCc--EEEEEcChhhhhh-hhhccCCCceeE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTH----CRDSLQLSGITN--GYFIATNATSTFR-SIVASYPGKLIL  302 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~~----a~~~a~~~~l~n--v~f~~~Da~~l~~-~~~~~~~~s~D~  302 (416)
                      +.+|||++||+|.+++.+|++.++ ..++++|++..    +.++++.++++|  ++++++|+.+++. .    ..+.||.
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~----~~~~fD~  128 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE----WGFGFDY  128 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC----CSSCEEE
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh----hCCCCcE
Confidence            578999999999999999997654 68999997554    455566778877  9999999988753 2    2457999


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      |++   ||. ...        ..+++.+.+.|+|||.|++...
T Consensus       129 V~l---DP~-g~~--------~~~l~~a~~~Lk~gGll~~t~t  159 (392)
T 3axs_A          129 VDL---DPF-GTP--------VPFIESVALSMKRGGILSLTAT  159 (392)
T ss_dssp             EEE---CCS-SCC--------HHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEE---CCC-cCH--------HHHHHHHHHHhCCCCEEEEEec
Confidence            987   552 111        3789999999999999998753

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.56  E-value=5.9e-08  Score=94.07  Aligned_cols=73  Identities=15%  Similarity=0.196  Sum_probs=53.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..|||||||+|.++..|+++  ..+++|+|++..+++    ++...+.+|++++++|+..+     +  ..++|.|++
T Consensus        42 ~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~-----~--~~~~D~Vv~  112 (299)
T 2h1r_A           42 SSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKT-----V--FPKFDVCTA  112 (299)
T ss_dssp             TTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSS-----C--CCCCSEEEE
T ss_pred             CcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhC-----C--cccCCEEEE
Confidence            3679999999999999999987  469999997555444    34445678999999999876     2  347999999


Q ss_pred             ECCCCC
Q 014919          306 QCPNPD  311 (416)
Q Consensus       306 ~fpdpw  311 (416)
                      +.|..|
T Consensus       113 n~py~~  118 (299)
T 2h1r_A          113 NIPYKI  118 (299)
T ss_dssp             ECCGGG
T ss_pred             cCCccc
Confidence            865443

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.56  E-value=1.8e-07  Score=98.58  Aligned_cols=100  Identities=16%  Similarity=0.180  Sum_probs=70.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +-+|||||||.|.++..||+.  +++|+|||+++.+++    .+.+.+..|+.|.+++++++.. .+  .+++||+|++.
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~-~~--~~~~fD~v~~~  141 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIA-AL--EEGEFDLAIGL  141 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHH-HC--CTTSCSEEEEE
T ss_pred             CCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhh-hc--cCCCccEEEEC
Confidence            468999999999999999998  789999997655444    4445566689999999998843 22  47899999876


Q ss_pred             CCCCCCCCcchhhhhhhH---HHHHHHHhhccCCcEEEEEe
Q 014919          307 CPNPDFNRPEHRWRMVQR---SLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~---~~l~~i~r~LkpgG~l~l~t  344 (416)
                      -.      -||   +.++   ..+..+.+.|+++|..++.+
T Consensus       142 e~------~eh---v~~~~~~~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          142 SV------FHH---IVHLHGIDEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             SC------HHH---HHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred             cc------hhc---CCCHHHHHHHHHHHHHhccccceeeEE
Confidence            21      121   1111   22445667788887766543

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.55  E-value=5.9e-07  Score=87.54  Aligned_cols=112  Identities=9%  Similarity=-0.001  Sum_probs=76.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+|||+|..+..+|+.. +...++|+|++.    .+.+++++.++.|++++++|+.++.. ..+ ...+||.|+
T Consensus       102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~-~~~-~~~~fD~Vl  179 (309)
T 2b9e_A          102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP-SDP-RYHEVHYIL  179 (309)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT-TCG-GGTTEEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCc-ccc-ccCCCCEEE
Confidence            36799999999999999999874 568999999754    44555666788999999999987621 100 015799998


Q ss_pred             EECCCC----CCCCcch-------hhh-----hhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNP----DFNRPEH-------RWR-----MVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdp----w~k~~h~-------krR-----l~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +.-|-.    +.+.++.       ..+     -.+.++|+...+.|+ ||+|+.+|
T Consensus       180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT  234 (309)
T 2b9e_A          180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST  234 (309)
T ss_dssp             ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred             EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence            752210    1010000       011     124578888888887 99988875

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.53  E-value=1.5e-07  Score=96.23  Aligned_cols=109  Identities=18%  Similarity=0.176  Sum_probs=76.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-------------CCCeEEEEchHHHHHH----HHHHhCCC--cEEEEEcChhhhhhh
Q 014919          231 QPLVVDIGSGNGLFLLGMARKR-------------KDLNFLGLELVTHCRD----SLQLSGIT--NGYFIATNATSTFRS  291 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~-------------p~~~~iGvD~~~~a~~----~a~~~~l~--nv~f~~~Da~~l~~~  291 (416)
                      +.+|||.|||+|.+++.+++..             +..+++|+|+...+.+    ++..+++.  ++.+.++|+...   
T Consensus       172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~---  248 (445)
T 2okc_A          172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK---  248 (445)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS---
T ss_pred             CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCC---
Confidence            5689999999999999988753             4578999997554443    34446765  788999998765   


Q ss_pred             hhccCCCceeEEEEECCCCCCCCcch-----hhh------hhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919          292 IVASYPGKLILVSIQCPNPDFNRPEH-----RWR------MVQRSLVEAVSDLLVHDGKVFLQSDIE  347 (416)
Q Consensus       292 ~~~~~~~s~D~v~~~fpdpw~k~~h~-----krR------l~~~~~l~~i~r~LkpgG~l~l~tD~~  347 (416)
                        + ....||.|+.|  .|+......     +..      -.+..|++.+.+.|||||++.+.+...
T Consensus       249 --~-~~~~fD~Iv~N--PPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~  310 (445)
T 2okc_A          249 --E-PSTLVDVILAN--PPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  310 (445)
T ss_dssp             --C-CSSCEEEEEEC--CCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             --c-ccCCcCEEEEC--CCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc
Confidence              2 23489999998  344221110     000      012489999999999999998877543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.46  E-value=4.6e-07  Score=85.76  Aligned_cols=118  Identities=9%  Similarity=0.003  Sum_probs=83.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ...|||||||+|-+++.++...|..+|+|+|+.+.+++    ++..+|+. .++...|...-     + +++.+|++.++
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~-----~-p~~~~DvaL~l  205 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLED-----R-LDEPADVTLLL  205 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTS-----C-CCSCCSEEEET
T ss_pred             CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeeccc-----C-CCCCcchHHHH
Confidence            67999999999999999999999999999998655544    44455655 78888887653     1 47889999886


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc-----------HHHHHHHHHHHHhCCCC
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-----------EEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~-----------~~~~~~~~~~~~~~~~~  363 (416)
                      -.-|.. ..+.|     ...+ ++.+.|+|+|.++- .|.           +.|.+++.+.+.+.++.
T Consensus       206 kti~~L-e~q~k-----g~g~-~ll~aL~~~~vvVS-fp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~  265 (281)
T 3lcv_B          206 KTLPCL-ETQQR-----GSGW-EVIDIVNSPNIVVT-FPTKSLGQRSKGMFQNYSQSFESQARERSCR  265 (281)
T ss_dssp             TCHHHH-HHHST-----THHH-HHHHHSSCSEEEEE-EECC-------CHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHh-hhhhh-----HHHH-HHHHHhCCCCEEEe-ccchhhcCCCcchhhHHHHHHHHHHHhcCCc
Confidence            222211 01111     1344 89999999998764 333           45666666666666764

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.40  E-value=4.1e-09  Score=99.07  Aligned_cols=105  Identities=13%  Similarity=0.027  Sum_probs=69.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccC-CCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASY-PGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~-~~s~D~v~~~  306 (416)
                      .+..|||||||+|.++..+++..  .+++|+|++..+.+.++++  ...|++++++|+.++     +++ +++| .|+.|
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~-----~~~~~~~f-~vv~n  100 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQF-----QFPNKQRY-KIVGN  100 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTT-----TCCCSSEE-EEEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhc-----CcccCCCc-EEEEe
Confidence            36789999999999999999984  7999999865544433221  346899999999886     223 3678 67777


Q ss_pred             CCCCCCCCcchhhhh-----hhHHHH----HHHHhhccCCcEEEEEe
Q 014919          307 CPNPDFNRPEHRWRM-----VQRSLV----EAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       307 fpdpw~k~~h~krRl-----~~~~~l----~~i~r~LkpgG~l~l~t  344 (416)
                      .  |+......-.++     ....++    +.+.|+|+|||.+.+.+
T Consensus       101 ~--Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A          101 I--PYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             C--CSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             C--CccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            4  333221100000     001223    66889999999877643

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.36  E-value=7.7e-07  Score=86.15  Aligned_cols=72  Identities=17%  Similarity=0.135  Sum_probs=55.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+..|||||||+|.++..|+++  ..+++|+|++..+.+.+++  .+.+|++++++|+..+     ++++.++|.|+.|.
T Consensus        50 ~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~-----~~~~~~fD~Iv~Nl  122 (295)
T 3gru_A           50 KDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKV-----DLNKLDFNKVVANL  122 (295)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTS-----CGGGSCCSEEEEEC
T ss_pred             CcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhC-----CcccCCccEEEEeC
Confidence            3679999999999999999998  5799999974433333221  1457999999999876     22355799999995


Q ss_pred             C
Q 014919          308 P  308 (416)
Q Consensus       308 p  308 (416)
                      |
T Consensus       123 P  123 (295)
T 3gru_A          123 P  123 (295)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.36  E-value=6.9e-07  Score=86.77  Aligned_cols=77  Identities=6%  Similarity=0.055  Sum_probs=59.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----hCCCcEEEEEcChhhhhhhhhcc-CCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVAS-YPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~~l~nv~f~~~Da~~l~~~~~~~-~~~s~D~v~  304 (416)
                      .+.+|||+|||+|.++..++++.|+.+++|+|.+..+++.+++    .+ .|++|+++|+.++ +..++. ...+||.|+
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l-~~~l~~~g~~~~D~Vl  103 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREA-DFLLKTLGIEKVDGIL  103 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGH-HHHHHHTTCSCEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHH-HHHHHhcCCCCCCEEE
Confidence            3679999999999999999999988999999987666655543    34 6899999999886 322210 125799998


Q ss_pred             EECC
Q 014919          305 IQCP  308 (416)
Q Consensus       305 ~~fp  308 (416)
                      +..+
T Consensus       104 ~D~g  107 (301)
T 1m6y_A          104 MDLG  107 (301)
T ss_dssp             EECS
T ss_pred             EcCc
Confidence            8643

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.31  E-value=7.4e-07  Score=84.59  Aligned_cols=71  Identities=18%  Similarity=0.113  Sum_probs=55.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH-------HHHHHHH----HhCCCc-EEEEEcChhhhhhhhhccCC-
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT-------HCRDSLQ----LSGITN-GYFIATNATSTFRSIVASYP-  297 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~-------~a~~~a~----~~~l~n-v~f~~~Da~~l~~~~~~~~~-  297 (416)
                      +.+|||+|||+|.+++.+|+.  ..+++|+|++.       .+++.++    .+++.| ++|+++|+.++++. +  ++ 
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~-~--~~~  158 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPA-L--VKT  158 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHH-H--HHH
T ss_pred             cCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHh-h--hcc
Confidence            578999999999999999996  57899999866       6666553    345545 99999999987432 2  23 


Q ss_pred             -CceeEEEEE
Q 014919          298 -GKLILVSIQ  306 (416)
Q Consensus       298 -~s~D~v~~~  306 (416)
                       ++||.|+++
T Consensus       159 ~~~fD~V~~d  168 (258)
T 2r6z_A          159 QGKPDIVYLD  168 (258)
T ss_dssp             HCCCSEEEEC
T ss_pred             CCCccEEEEC
Confidence             689999886

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.30  E-value=2.6e-06  Score=91.83  Aligned_cols=113  Identities=16%  Similarity=0.097  Sum_probs=76.3

Q ss_pred             CCeEEEEeccccHHHHHHHHh------------------------------------------CCCCeEEEEchH----H
Q 014919          231 QPLVVDIGSGNGLFLLGMARK------------------------------------------RKDLNFLGLELV----T  264 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~------------------------------------------~p~~~~iGvD~~----~  264 (416)
                      +..+||.+||+|.++++.|..                                          .++.+++|+|+.    .
T Consensus       191 ~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~  270 (703)
T 3v97_A          191 GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQ  270 (703)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHH
T ss_pred             CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHH
Confidence            578999999999999998864                                          234689999964    4


Q ss_pred             HHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHH---HHHHHhhccCCcEE
Q 014919          265 HCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSL---VEAVSDLLVHDGKV  340 (416)
Q Consensus       265 ~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~---l~~i~r~LkpgG~l  340 (416)
                      .|+++++..|+.+ ++|.++|+.++..   |...+++|.|++|  .||- .+...... ...+   +.+..+.+.|||.+
T Consensus       271 ~A~~N~~~agv~~~i~~~~~D~~~~~~---~~~~~~~d~Iv~N--PPYG-~Rlg~~~~-l~~ly~~l~~~lk~~~~g~~~  343 (703)
T 3v97_A          271 RARTNARLAGIGELITFEVKDVAQLTN---PLPKGPYGTVLSN--PPYG-ERLDSEPA-LIALHSLLGRIMKNQFGGWNL  343 (703)
T ss_dssp             HHHHHHHHTTCGGGEEEEECCGGGCCC---SCTTCCCCEEEEC--CCCC-C---CCHH-HHHHHHHHHHHHHHHCTTCEE
T ss_pred             HHHHHHHHcCCCCceEEEECChhhCcc---ccccCCCCEEEeC--CCcc-ccccchhH-HHHHHHHHHHHHHhhCCCCeE
Confidence            5556666778876 9999999988621   1123489999998  4552 22111111 1233   34444555689999


Q ss_pred             EEEeCcHHHH
Q 014919          341 FLQSDIEEVM  350 (416)
Q Consensus       341 ~l~tD~~~~~  350 (416)
                      ++.|.+..+.
T Consensus       344 ~ilt~~~~l~  353 (703)
T 3v97_A          344 SLFSASPDLL  353 (703)
T ss_dssp             EEEESCHHHH
T ss_pred             EEEeCCHHHH
Confidence            9998877653

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.30  E-value=3.2e-06  Score=79.20  Aligned_cols=96  Identities=15%  Similarity=-0.039  Sum_probs=67.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ....|||||||.|-+++.++   |...|+|+|++..+++.++    .++ .+.++..+|....     + .++++|.+++
T Consensus       105 ~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~~~-----~-~~~~~DvvLl  174 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVLCA-----P-PAEAGDLALI  174 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTTTS-----C-CCCBCSEEEE
T ss_pred             CCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeecccC-----C-CCCCcchHHH
Confidence            36799999999999988877   8999999998665555443    334 6789999998765     2 3679999988


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      +-      .-|+-.+.-....+ .+.+.|++++.++-
T Consensus       175 lk------~lh~LE~q~~~~~~-~ll~aL~~~~vvVs  204 (253)
T 3frh_A          175 FK------LLPLLEREQAGSAM-ALLQSLNTPRMAVS  204 (253)
T ss_dssp             ES------CHHHHHHHSTTHHH-HHHHHCBCSEEEEE
T ss_pred             HH------HHHHhhhhchhhHH-HHHHHhcCCCEEEE
Confidence            72      22221111111333 77779999977654

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.28  E-value=4.3e-06  Score=78.43  Aligned_cols=71  Identities=14%  Similarity=0.126  Sum_probs=54.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCC-CceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYP-GKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~-~s~D~v~~~  306 (416)
                      .+..|||||||+|.++..++++.  .+++|+|++..+++.++++  ..+|++++++|+.++     ++++ ..+ .|+.|
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~-----~~~~~~~~-~vv~n  101 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQF-----KFPKNQSY-KIFGN  101 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGC-----CCCSSCCC-EEEEE
T ss_pred             CCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhC-----CcccCCCe-EEEEe
Confidence            36789999999999999999985  6899999877776665543  246899999999886     2232 345 46677


Q ss_pred             CC
Q 014919          307 CP  308 (416)
Q Consensus       307 fp  308 (416)
                      .|
T Consensus       102 lP  103 (244)
T 1qam_A          102 IP  103 (244)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.26  E-value=3.9e-06  Score=80.91  Aligned_cols=124  Identities=13%  Similarity=0.162  Sum_probs=91.8

Q ss_pred             CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH------h---CCCcEEEEEcChhhhhhhhhccCCCc
Q 014919          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL------S---GITNGYFIATNATSTFRSIVASYPGK  299 (416)
Q Consensus       229 ~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~------~---~l~nv~f~~~Da~~l~~~~~~~~~~s  299 (416)
                      ++..+||=||-|.|..+.++++..|..+++.||+.....+.+++      .   .-++++++.+|+..++..    ..++
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~----~~~~  157 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ----TSQT  157 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC----SSCC
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh----cccc
Confidence            45789999999999999999988777899999974433333221      1   235799999999988642    4678


Q ss_pred             eeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhC
Q 014919          300 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  360 (416)
Q Consensus       300 ~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~  360 (416)
                      +|+|++-.+||+-..    ..+...+|++.++++|+|||.+..++..    .+.+..+.+.+.+.
T Consensus       158 yDvIi~D~~dp~~~~----~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~  218 (294)
T 3o4f_A          158 FDVIISDCTDPIGPG----ESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHY  218 (294)
T ss_dssp             EEEEEESCCCCCCTT----CCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcCCCc----hhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhh
Confidence            999999888887322    2467789999999999999999987532    22334455555554

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.22  E-value=1.9e-06  Score=81.70  Aligned_cols=74  Identities=20%  Similarity=0.088  Sum_probs=54.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhh-hhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTF-RSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~-~~~~~~~~~s~D~v~~~  306 (416)
                      .+..|||||||+|.++..|+++.  .+++|+|++..+.+.++++  ...|++++++|+.++. ++.+  ..+++| |+.|
T Consensus        29 ~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~--~~~~~~-vv~N  103 (255)
T 3tqs_A           29 KTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVK--TDKPLR-VVGN  103 (255)
T ss_dssp             TTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSC--CSSCEE-EEEE
T ss_pred             CcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhc--cCCCeE-EEec
Confidence            46789999999999999999874  6999999876666555432  2578999999998861 1111  135688 7778


Q ss_pred             CC
Q 014919          307 CP  308 (416)
Q Consensus       307 fp  308 (416)
                      .|
T Consensus       104 lP  105 (255)
T 3tqs_A          104 LP  105 (255)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.22  E-value=5.9e-06  Score=79.35  Aligned_cols=99  Identities=11%  Similarity=0.050  Sum_probs=75.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-----CCCeEEEEch------------------------------HHHHHHHHHHhCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKR-----KDLNFLGLEL------------------------------VTHCRDSLQLSGI  275 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~-----p~~~~iGvD~------------------------------~~~a~~~a~~~~l  275 (416)
                      ...|||+||..|.+++.||+..     |+.+++++|.                              .+.++++.++.++
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            5799999999999999998764     5889999993                              1235566667787


Q ss_pred             --CcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          276 --TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       276 --~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                        ++++++.+|+.+.++. +  +++++|+|++-. |     ...    -...+|+.+...|+|||.+++
T Consensus       187 ~~~~I~li~Gda~etL~~-~--~~~~~d~vfIDa-D-----~y~----~~~~~Le~~~p~L~pGGiIv~  242 (282)
T 2wk1_A          187 LDEQVRFLPGWFKDTLPT-A--PIDTLAVLRMDG-D-----LYE----STWDTLTNLYPKVSVGGYVIV  242 (282)
T ss_dssp             CSTTEEEEESCHHHHSTT-C--CCCCEEEEEECC-C-----SHH----HHHHHHHHHGGGEEEEEEEEE
T ss_pred             CcCceEEEEeCHHHHHhh-C--CCCCEEEEEEcC-C-----ccc----cHHHHHHHHHhhcCCCEEEEE
Confidence              6899999999887653 2  357899998842 1     110    123789999999999999887

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.21  E-value=4.5e-06  Score=78.74  Aligned_cols=74  Identities=20%  Similarity=0.180  Sum_probs=55.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+..|||||||+|.++..++++ +..+++|+|++..+.+.++++...|++++++|+..+ +  ++...+.+ .|+.|.|
T Consensus        31 ~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~-~--~~~~~~~~-~vv~NlP  104 (249)
T 3ftd_A           31 EGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKF-P--FCSLGKEL-KVVGNLP  104 (249)
T ss_dssp             TTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTC-C--GGGSCSSE-EEEEECC
T ss_pred             CcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhC-C--hhHccCCc-EEEEECc
Confidence            3679999999999999999987 557999999988888777655445899999999886 1  11011233 6777744

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.19  E-value=2.5e-06  Score=86.06  Aligned_cols=71  Identities=13%  Similarity=0.112  Sum_probs=55.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      +.+|||+|||+|..++.||+.  ..+++|+|++..    |.++++..  +++|++++++|+.+.++. +  .+++||.|+
T Consensus        94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~--~~~~fDvV~  168 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-I--KTFHPDYIY  168 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-H--HHHCCSEEE
T ss_pred             CCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-c--cCCCceEEE
Confidence            689999999999999999987  469999997544    44555555  788999999999886432 1  135799998


Q ss_pred             EE
Q 014919          305 IQ  306 (416)
Q Consensus       305 ~~  306 (416)
                      ++
T Consensus       169 lD  170 (410)
T 3ll7_A          169 VD  170 (410)
T ss_dssp             EC
T ss_pred             EC
Confidence            75

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.18  E-value=2.6e-06  Score=89.25  Aligned_cols=124  Identities=19%  Similarity=0.187  Sum_probs=82.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC------------------CCeEEEEchHHHHHHH----HHHhCCCc-----EEEEEc
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK------------------DLNFLGLELVTHCRDS----LQLSGITN-----GYFIAT  283 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p------------------~~~~iGvD~~~~a~~~----a~~~~l~n-----v~f~~~  283 (416)
                      +.+|+|.+||+|.+++.+++...                  ..+++|+|+...+.+.    +..+++.+     +.+.++
T Consensus       170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~g  249 (541)
T 2ar0_A          170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG  249 (541)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred             CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeC
Confidence            57899999999999999887521                  2479999975554443    33456665     788999


Q ss_pred             ChhhhhhhhhccCCCceeEEEEECCCCCCCCcch--hh------hhhhHHHHHHHHhhccCCcEEEEEeCcHHH-----H
Q 014919          284 NATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH--RW------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEV-----M  350 (416)
Q Consensus       284 Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~--kr------Rl~~~~~l~~i~r~LkpgG~l~l~tD~~~~-----~  350 (416)
                      |+....  ..  ....||.|+.|  .||......  +.      .-....|++.+.+.|+|||++.+.+.+..+     .
T Consensus       250 DtL~~~--~~--~~~~fD~Vv~N--PPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~  323 (541)
T 2ar0_A          250 NTLGSD--GE--NLPKAHIVATN--PPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG  323 (541)
T ss_dssp             CTTSHH--HH--TSCCEEEEEEC--CCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHH
T ss_pred             CCcccc--cc--cccCCeEEEEC--CCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHH
Confidence            986641  11  35689999998  444322110  00      011347999999999999999988765433     3


Q ss_pred             HHHHHHHHhC
Q 014919          351 LRMKQQFLEY  360 (416)
Q Consensus       351 ~~~~~~~~~~  360 (416)
                      ..+++.+.+.
T Consensus       324 ~~iR~~L~~~  333 (541)
T 2ar0_A          324 TDIRRDLMDK  333 (541)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhc
Confidence            3455555443

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.17  E-value=5e-06  Score=89.63  Aligned_cols=124  Identities=11%  Similarity=0.111  Sum_probs=81.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC---CCeEEEEchHHHHHHHH--H----H----hCCCcEEEEEcChhhhhhhhhccCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK---DLNFLGLELVTHCRDSL--Q----L----SGITNGYFIATNATSTFRSIVASYP  297 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p---~~~~iGvD~~~~a~~~a--~----~----~~l~nv~f~~~Da~~l~~~~~~~~~  297 (416)
                      +.+|||.|||+|.+++.+++..+   ..+++|+|+...+.+.+  +    .    ++..+..+...|.... . ..  ..
T Consensus       322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~-~-~~--~~  397 (878)
T 3s1s_A          322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSL-N-PE--DF  397 (878)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGC-C-GG--GG
T ss_pred             CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcc-c-cc--cc
Confidence            67999999999999999998875   45899999754443333  1    1    2333445666666543 1 11  24


Q ss_pred             CceeEEEEECCCCCCCCcc--hh-----hhh----------------hhHHHHHHHHhhccCCcEEEEEeCcHHH-----
Q 014919          298 GKLILVSIQCPNPDFNRPE--HR-----WRM----------------VQRSLVEAVSDLLVHDGKVFLQSDIEEV-----  349 (416)
Q Consensus       298 ~s~D~v~~~fpdpw~k~~h--~k-----rRl----------------~~~~~l~~i~r~LkpgG~l~l~tD~~~~-----  349 (416)
                      ..||.|..|  .||.....  ..     +|+                ....|++.+.+.|+|||++.+.+....+     
T Consensus       398 ~kFDVVIgN--PPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~  475 (878)
T 3s1s_A          398 ANVSVVVMN--PPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGN  475 (878)
T ss_dssp             TTEEEEEEC--CBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSH
T ss_pred             CCCCEEEEC--CCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCCh
Confidence            689999998  55532110  00     011                1346899999999999999998766544     


Q ss_pred             -HHHHHHHHHhC
Q 014919          350 -MLRMKQQFLEY  360 (416)
Q Consensus       350 -~~~~~~~~~~~  360 (416)
                       ...+++.+.+.
T Consensus       476 ~~kkLRk~LLe~  487 (878)
T 3s1s_A          476 ESKAFREFLVGN  487 (878)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhC
Confidence             35566655443

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.13  E-value=2.2e-06  Score=82.31  Aligned_cols=59  Identities=17%  Similarity=0.039  Sum_probs=47.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC--CeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLELVTHCRDSLQLSGITNGYFIATNATST  288 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~--~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l  288 (416)
                      .+..|||||||+|.++..|+++.+.  .+++|+|++..+++.++++...|++++++|+..+
T Consensus        42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTF  102 (279)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGC
T ss_pred             CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcC
Confidence            4679999999999999999998653  4599999877666655443146899999999886

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.12  E-value=1.4e-05  Score=83.67  Aligned_cols=128  Identities=17%  Similarity=0.177  Sum_probs=86.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC---CCCeEEEEchHHHHH----HHHHHhCC--CcEEEEEcChhhhhhhhhccCCCce
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR---KDLNFLGLELVTHCR----DSLQLSGI--TNGYFIATNATSTFRSIVASYPGKL  300 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~---p~~~~iGvD~~~~a~----~~a~~~~l--~nv~f~~~Da~~l~~~~~~~~~~s~  300 (416)
                      .+.+|+|.+||+|.+++.+++..   +..+++|+|+...+.    .++..+++  +++.+.++|.... + +-......|
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~-d-~p~~~~~~f  298 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDE-D-WPTQEPTNF  298 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTS-C-SCCSSCCCB
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecc-c-ccccccccc
Confidence            36799999999999999998874   467999999754443    33445677  5789999998653 1 000135789


Q ss_pred             eEEEEECCCCCCCCcc------hhhhh-----------hhHHHHHHHHhhcc-CCcEEEEEeCcHHH-----HHHHHHHH
Q 014919          301 ILVSIQCPNPDFNRPE------HRWRM-----------VQRSLVEAVSDLLV-HDGKVFLQSDIEEV-----MLRMKQQF  357 (416)
Q Consensus       301 D~v~~~fpdpw~k~~h------~krRl-----------~~~~~l~~i~r~Lk-pgG~l~l~tD~~~~-----~~~~~~~~  357 (416)
                      |.|+.|  .||.....      ...|.           .+-.|++.+.+.|+ |||++.+.+.+..+     ...+++.+
T Consensus       299 D~IvaN--PPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~L  376 (542)
T 3lkd_A          299 DGVLMN--PPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKAL  376 (542)
T ss_dssp             SEEEEC--CCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHH
T ss_pred             cEEEec--CCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHH
Confidence            999998  44432110      00111           02358999999999 99999888765544     24466666


Q ss_pred             HhCC
Q 014919          358 LEYG  361 (416)
Q Consensus       358 ~~~~  361 (416)
                      .+..
T Consensus       377 le~~  380 (542)
T 3lkd_A          377 LEEG  380 (542)
T ss_dssp             HHTT
T ss_pred             HhCC
Confidence            5554

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.10  E-value=3.4e-06  Score=80.64  Aligned_cols=70  Identities=14%  Similarity=0.079  Sum_probs=53.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-CCCcEEEEEcChhhhhhhhhccCC-CceeEEEEECC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GITNGYFIATNATSTFRSIVASYP-GKLILVSIQCP  308 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-~l~nv~f~~~Da~~l~~~~~~~~~-~s~D~v~~~fp  308 (416)
                      + .|||||||+|.++..|+++.  .+++|+|++..+.+.++++ ...|++++++|+..+     ++++ ..+|.|+.|.|
T Consensus        48 ~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~-----~~~~~~~~~~iv~NlP  119 (271)
T 3fut_A           48 G-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLY-----PWEEVPQGSLLVANLP  119 (271)
T ss_dssp             S-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGS-----CGGGSCTTEEEEEEEC
T ss_pred             C-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhC-----ChhhccCccEEEecCc
Confidence            5 89999999999999999984  6899999765555544332 236899999999886     1112 25788999954

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.09  E-value=2.2e-05  Score=71.66  Aligned_cols=96  Identities=11%  Similarity=0.007  Sum_probs=68.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCC---CcEEEEEcChhhh--------------h
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI---TNGYFIATNATST--------------F  289 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l---~nv~f~~~Da~~l--------------~  289 (416)
                      ..+||||||  |.+++.||+. ++.+++.+|.    .+.|++..++.++   +|++++.+|+.+.              +
T Consensus        31 a~~VLEiGt--GySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           31 AEVILEYGS--GGSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             CSEEEEESC--SHHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCEEEEECc--hHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            689999999  4788999984 5889999995    4556666777774   5899999997542              1


Q ss_pred             hhh----hcc-CCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          290 RSI----VAS-YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       290 ~~~----~~~-~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      +.+    ... ..++||+|++.   .      .|+    ...+..+.+.|+|||.+++
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfID---g------~k~----~~~~~~~l~~l~~GG~Iv~  152 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVD---G------RFR----VGCALATAFSITRPVTLLF  152 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEEC---S------SSH----HHHHHHHHHHCSSCEEEEE
T ss_pred             HHHhhhhhccccCCCCCEEEEe---C------CCc----hhHHHHHHHhcCCCeEEEE
Confidence            111    111 13689999885   2      111    1556667799999999965

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.02  E-value=4.4e-06  Score=79.24  Aligned_cols=69  Identities=17%  Similarity=0.125  Sum_probs=52.1

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEchHH-------HHHHHHHH----hC-C-CcEEEEEcChhhhhhhhhccCCC
Q 014919          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT-------HCRDSLQL----SG-I-TNGYFIATNATSTFRSIVASYPG  298 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~-------~a~~~a~~----~~-l-~nv~f~~~Da~~l~~~~~~~~~~  298 (416)
                      .+|||+|||+|..++.+|.+  ..+++++|.+.       .+++++..    ++ + .|++++++|+.++++. +   +.
T Consensus        90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~-~---~~  163 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-I---TP  163 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT-C---SS
T ss_pred             CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh-C---cc
Confidence            78999999999999999998  56899999644       23443332    12 3 5799999999987532 2   34


Q ss_pred             ceeEEEEE
Q 014919          299 KLILVSIQ  306 (416)
Q Consensus       299 s~D~v~~~  306 (416)
                      +||.|++.
T Consensus       164 ~fDvV~lD  171 (258)
T 2oyr_A          164 RPQVVYLD  171 (258)
T ss_dssp             CCSEEEEC
T ss_pred             cCCEEEEc
Confidence            79999886

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.00  E-value=2.5e-05  Score=78.07  Aligned_cols=112  Identities=13%  Similarity=0.164  Sum_probs=77.3

Q ss_pred             CCeEEEEeccccHHHHHHHHh-----------------CCCCeEEEEch-----------HHHHHHHHH-HhCC-CcEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARK-----------------RKDLNFLGLEL-----------VTHCRDSLQ-LSGI-TNGYF  280 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~-----------------~p~~~~iGvD~-----------~~~a~~~a~-~~~l-~nv~f  280 (416)
                      .-+|+|+||++|..++.+...                 .|+.+|+.-|+           +....+.+. ..+. .+-.|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            478999999999999887765                 47889999994           122222222 2222 24578


Q ss_pred             EEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcc-----------hhhhh---------h-----------hHHHHHH
Q 014919          281 IATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE-----------HRWRM---------V-----------QRSLVEA  329 (416)
Q Consensus       281 ~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h-----------~krRl---------~-----------~~~~l~~  329 (416)
                      +.+....+....|  +++++|.|+.++.-.|..+..           .|.++         +           -..||+.
T Consensus       133 ~~gvpgSFy~rlf--p~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~  210 (384)
T 2efj_A          133 IGAMPGSFYSRLF--PEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRI  210 (384)
T ss_dssp             EEECCSCTTSCCS--CTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccC--CCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877765666  589999999999999964321           11110         0           1245888


Q ss_pred             HHhhccCCcEEEEEe
Q 014919          330 VSDLLVHDGKVFLQS  344 (416)
Q Consensus       330 i~r~LkpgG~l~l~t  344 (416)
                      .++.|+|||++++.+
T Consensus       211 Ra~eL~pGG~mvl~~  225 (384)
T 2efj_A          211 HSEELISRGRMLLTF  225 (384)
T ss_dssp             HHHHEEEEEEEEEEE
T ss_pred             HHHHhccCCeEEEEE
Confidence            899999999999874

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.97  E-value=8.9e-05  Score=73.55  Aligned_cols=124  Identities=13%  Similarity=0.051  Sum_probs=85.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCC------CcEEEEEcChhhhhhhhhccCCCc
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGI------TNGYFIATNATSTFRSIVASYPGK  299 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l------~nv~f~~~Da~~l~~~~~~~~~~s  299 (416)
                      .+.+|||+++|.|.=+..||+..+...++++|++..    ..+++++.+.      .|+.+...|+..+ ...   ..+.
T Consensus       148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~-~~~---~~~~  223 (359)
T 4fzv_A          148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKW-GEL---EGDT  223 (359)
T ss_dssp             TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGH-HHH---STTC
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhc-chh---cccc
Confidence            468999999999999999999887778999997432    3344444443      4799999999887 322   3678


Q ss_pred             eeEEEEECC-----------CCCCCCcchhh---h--hhhHHHHHHHHhhccCCcEEEEEe------CcHHHHHHHHHHH
Q 014919          300 LILVSIQCP-----------NPDFNRPEHRW---R--MVQRSLVEAVSDLLVHDGKVFLQS------DIEEVMLRMKQQF  357 (416)
Q Consensus       300 ~D~v~~~fp-----------dpw~k~~h~kr---R--l~~~~~l~~i~r~LkpgG~l~l~t------D~~~~~~~~~~~~  357 (416)
                      ||.|.+--|           +|....+....   +  .+|.++|+...+.|||||+|+.+|      .++...++.++..
T Consensus       224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~L~~~  303 (359)
T 4fzv_A          224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELL  303 (359)
T ss_dssp             EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHHHHHHHH
T ss_pred             CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHHHHHHhC
Confidence            999988633           11000000000   1  136788999999999999999886      4555555555433

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.95  E-value=5.3e-05  Score=75.37  Aligned_cols=115  Identities=15%  Similarity=0.109  Sum_probs=83.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh------C------CCcEEEEEcChhhhhhhhhccCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS------G------ITNGYFIATNATSTFRSIVASYP  297 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~------~------l~nv~f~~~Da~~l~~~~~~~~~  297 (416)
                      ++++||=||-|.|..+.++.+. |..+++.||+.....+.+++.      +      -++++++.+|+..++.+.-. ..
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~-~~  282 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK-EG  282 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH-HT
T ss_pred             CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh-cc
Confidence            3579999999999999998875 557999999765555544432      1      13589999999988654321 24


Q ss_pred             CceeEEEEECCCCCCCC--cchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          298 GKLILVSIQCPNPDFNR--PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       298 ~s~D~v~~~fpdpw~k~--~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      +.||+|++-.+||+...  .+.-..+...+|++.++++|+|||.+..+...
T Consensus       283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s  333 (381)
T 3c6k_A          283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNC  333 (381)
T ss_dssp             CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence            68999999877765321  12223467789999999999999999987544

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.92  E-value=1e-05  Score=84.66  Aligned_cols=124  Identities=14%  Similarity=0.044  Sum_probs=79.6

Q ss_pred             CeEEEEeccccHHHHHHHHhCC---------------CCeEEEEchHHHHHH----HHHHhCCC-cEEEEEcChhhhhhh
Q 014919          232 PLVVDIGSGNGLFLLGMARKRK---------------DLNFLGLELVTHCRD----SLQLSGIT-NGYFIATNATSTFRS  291 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~~p---------------~~~~iGvD~~~~a~~----~a~~~~l~-nv~f~~~Da~~l~~~  291 (416)
                      .+|||.+||+|.+++.+++..+               ..+++|+|+...+.+    ++..+++. ++.+.++|.... + 
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~-~-  323 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLD-D-  323 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTS-C-
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcC-c-
Confidence            4899999999999998865432               468999997554433    33345654 454477886543 1 


Q ss_pred             hhccCCCceeEEEEECCCCCCCCcchh------hh------------h-----hhHHHHHHHHhhccCCcEEEEEeCcHH
Q 014919          292 IVASYPGKLILVSIQCPNPDFNRPEHR------WR------------M-----VQRSLVEAVSDLLVHDGKVFLQSDIEE  348 (416)
Q Consensus       292 ~~~~~~~s~D~v~~~fpdpw~k~~h~k------rR------------l-----~~~~~l~~i~r~LkpgG~l~l~tD~~~  348 (416)
                      .+  ....||.|+.|  .||.......      .|            +     .+-.|++.+.+.|+|||++.+.+.+..
T Consensus       324 ~~--~~~~fD~Iv~N--PPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~  399 (544)
T 3khk_A          324 QH--PDLRADFVMTN--PPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGS  399 (544)
T ss_dssp             SC--TTCCEEEEEEC--CCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHH
T ss_pred             cc--ccccccEEEEC--CCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchh
Confidence            11  35789999998  4543211000      01            0     112699999999999999888765433


Q ss_pred             H------HHHHHHHHHhCC
Q 014919          349 V------MLRMKQQFLEYG  361 (416)
Q Consensus       349 ~------~~~~~~~~~~~~  361 (416)
                      +      ...+++.+.+..
T Consensus       400 L~~~~~~~~~iRk~Lle~~  418 (544)
T 3khk_A          400 MSSNTNNEGEIRKTLVEQD  418 (544)
T ss_dssp             HHCCGGGHHHHHHHHHHTT
T ss_pred             hhcCcchHHHHHHHHHhCC
Confidence            2      345666665554

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.91  E-value=2e-05  Score=74.85  Aligned_cols=120  Identities=13%  Similarity=0.053  Sum_probs=72.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH---HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ---LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~---~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      ..+|||||||+|.++...+++.+...+.|+|+.........   ..+ .|+..++.++...     .+.++.+|+|....
T Consensus        75 ~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g-~~ii~~~~~~dv~-----~l~~~~~DlVlsD~  148 (277)
T 3evf_A           75 EGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLG-WNIITFKDKTDIH-----RLEPVKCDTLLCDI  148 (277)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTT-GGGEEEECSCCTT-----TSCCCCCSEEEECC
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCC-CCeEEEeccceeh-----hcCCCCccEEEecC
Confidence            56899999999999999988877667888886321100000   001 1556667765332     22467899998754


Q ss_pred             CCCCCCCcchhhhh-hhHHHHHHHHhhccCC-cEEEEEeCc--HHHHHHHHHHHHh
Q 014919          308 PNPDFNRPEHRWRM-VQRSLVEAVSDLLVHD-GKVFLQSDI--EEVMLRMKQQFLE  359 (416)
Q Consensus       308 pdpw~k~~h~krRl-~~~~~l~~i~r~Lkpg-G~l~l~tD~--~~~~~~~~~~~~~  359 (416)
                      ...   ..++-... -.-.+|+.+.++|+|| |.|+++.=.  ..-+..+++.|++
T Consensus       149 apn---sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~  201 (277)
T 3evf_A          149 GES---SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQR  201 (277)
T ss_dssp             CCC---CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHH
T ss_pred             ccC---cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHH
Confidence            211   22211100 0124588899999999 999998644  2333444555554

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.84  E-value=1.5e-05  Score=75.38  Aligned_cols=76  Identities=17%  Similarity=0.102  Sum_probs=52.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC--CCcEEEEEcChhhh-hhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG--ITNGYFIATNATST-FRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~--l~nv~f~~~Da~~l-~~~~~~~~~~s~D~v~~~  306 (416)
                      .+..|||||||+|.++. +++ .+..+++|+|++..+.+.++++-  .+|++++++|+..+ +++.++ .++..+.|+.|
T Consensus        21 ~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~-~~~~~~~vvsN   97 (252)
T 1qyr_A           21 KGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE-KMGQPLRVFGN   97 (252)
T ss_dssp             TTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH-HHTSCEEEEEE
T ss_pred             CcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc-ccCCceEEEEC
Confidence            35789999999999999 654 44334999999887777765432  35899999999885 122110 01235778888


Q ss_pred             CC
Q 014919          307 CP  308 (416)
Q Consensus       307 fp  308 (416)
                      .|
T Consensus        98 lP   99 (252)
T 1qyr_A           98 LP   99 (252)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.81  E-value=4.2e-05  Score=76.31  Aligned_cols=113  Identities=16%  Similarity=0.157  Sum_probs=70.8

Q ss_pred             CCCeEEEEeccccHHHHHHHH--------hC-------CCCeEEEEchH-----HHHHHHHHH----------h-CCCcE
Q 014919          230 AQPLVVDIGSGNGLFLLGMAR--------KR-------KDLNFLGLELV-----THCRDSLQL----------S-GITNG  278 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~--------~~-------p~~~~iGvD~~-----~~a~~~a~~----------~-~l~nv  278 (416)
                      ..-+|+|+|||+|..++.++.        ++       |+.+++.-|+-     .........          . .-.+-
T Consensus        52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~  131 (374)
T 3b5i_A           52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS  131 (374)
T ss_dssp             CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred             CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence            357899999999999988732        22       77888888841     111110000          0 00122


Q ss_pred             EEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcch-----------hhhh-------------------hhHHHHH
Q 014919          279 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH-----------RWRM-------------------VQRSLVE  328 (416)
Q Consensus       279 ~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~-----------krRl-------------------~~~~~l~  328 (416)
                      .|+.+....+....|  +++++|.|+.++.-.|..+...           |.++                   --..||+
T Consensus       132 ~f~~gvpgSFy~rlf--P~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~  209 (374)
T 3b5i_A          132 YFVAGVPGSFYRRLF--PARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLR  209 (374)
T ss_dssp             SEEEEEESCTTSCCS--CTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecChhhhcccC--CCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            355555555434445  5899999999999999653211           1100                   1135789


Q ss_pred             HHHhhccCCcEEEEEe
Q 014919          329 AVSDLLVHDGKVFLQS  344 (416)
Q Consensus       329 ~i~r~LkpgG~l~l~t  344 (416)
                      ..++.|+|||++++.+
T Consensus       210 ~ra~eL~pGG~mvl~~  225 (374)
T 3b5i_A          210 ARAAEVKRGGAMFLVC  225 (374)
T ss_dssp             HHHHHEEEEEEEEEEE
T ss_pred             HHHHHhCCCCEEEEEE
Confidence            9999999999999874

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.68  E-value=9.6e-05  Score=78.33  Aligned_cols=99  Identities=12%  Similarity=0.183  Sum_probs=66.3

Q ss_pred             CCeEEEEeccccHH---HHHHHHhC-CCCeEEEEch---HHHHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeE
Q 014919          231 QPLVVDIGSGNGLF---LLGMARKR-KDLNFLGLEL---VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLIL  302 (416)
Q Consensus       231 ~~~vLDIGCG~G~~---~~~lA~~~-p~~~~iGvD~---~~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~  302 (416)
                      ..+|||||||+|-+   ++..+++. -..++++||.   ...|++..+.++.. .|+++++|++++ .     .++.+|.
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev-~-----LPEKVDI  431 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREW-V-----APEKADI  431 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTC-C-----CSSCEEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceec-c-----CCcccCE
Confidence            35799999999988   44444432 2347899995   34455666677776 499999999987 2     3578999


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEE
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  341 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~  341 (416)
                      |..=.-... - -+.  .+  ++.|....|.|||||.++
T Consensus       432 IVSEwMG~f-L-l~E--~m--levL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          432 IVSELLGSF-A-DNE--LS--PECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EECCCCBTT-B-GGG--CH--HHHHHHHGGGEEEEEEEE
T ss_pred             EEEEcCccc-c-ccc--CC--HHHHHHHHHhcCCCcEEc
Confidence            965321111 0 011  11  467788899999999843

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.64  E-value=9.1e-05  Score=78.83  Aligned_cols=104  Identities=10%  Similarity=0.047  Sum_probs=66.3

Q ss_pred             CCeEEEEeccccHHHHH---HHH-hC---------CCCeEEEEchHHHH---HHHHHHhCCCc-EEEEEcChhhhhhhhh
Q 014919          231 QPLVVDIGSGNGLFLLG---MAR-KR---------KDLNFLGLELVTHC---RDSLQLSGITN-GYFIATNATSTFRSIV  293 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~---lA~-~~---------p~~~~iGvD~~~~a---~~~a~~~~l~n-v~f~~~Da~~l~~~~~  293 (416)
                      ..+|||||||+|-+...   .++ ..         ...+++|||.+..|   ++....++..+ |+++++|++++ ....
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev-~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSL-PGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGH-HHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhc-cccc
Confidence            45899999999999632   222 11         24599999965433   23333467765 99999999997 2100


Q ss_pred             -ccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEE
Q 014919          294 -ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  341 (416)
Q Consensus       294 -~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~  341 (416)
                       .-.++.+|.|..-..... -.     ....++.|..+.+.|||||.++
T Consensus       489 ~~~~~ekVDIIVSElmGsf-l~-----nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          489 KDRGFEQPDIIVSELLGSF-GD-----NELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHTTCCCCSEEEECCCBTT-BG-----GGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccCCCCcccEEEEeccccc-cc-----hhccHHHHHHHHHhCCCCcEEE
Confidence             001578999976422211 00     0123578888899999999743

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.55  E-value=3.5e-05  Score=76.38  Aligned_cols=112  Identities=13%  Similarity=0.149  Sum_probs=74.2

Q ss_pred             CCeEEEEeccccHHHHHHHHh----------------CCCCeEEEEchHH---HHH-HHHHHh-CCCcEEEEEcChhhhh
Q 014919          231 QPLVVDIGSGNGLFLLGMARK----------------RKDLNFLGLELVT---HCR-DSLQLS-GITNGYFIATNATSTF  289 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~----------------~p~~~~iGvD~~~---~a~-~~a~~~-~l~nv~f~~~Da~~l~  289 (416)
                      .-+|+|+||++|..++.+...                .|+.+++..|+-.   +.+ +..... .-.+-.|+.+....+.
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            467999999999887765443                5778899999521   111 111100 0013477777777665


Q ss_pred             hhhhccCCCceeEEEEECCCCCCCCcc-----hhhh-------------h----h---hHHHHHHHHhhccCCcEEEEEe
Q 014919          290 RSIVASYPGKLILVSIQCPNPDFNRPE-----HRWR-------------M----V---QRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       290 ~~~~~~~~~s~D~v~~~fpdpw~k~~h-----~krR-------------l----~---~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ...|  +++++|.++.++.-.|..+.-     .|.+             .    .   -..||+..++.|+|||++++.+
T Consensus       132 ~rlf--p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~  209 (359)
T 1m6e_X          132 GRLF--PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SCCS--CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hccC--CCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            5556  589999999999999965421     0100             0    0   1367999999999999999874

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.54  E-value=0.00011  Score=63.42  Aligned_cols=85  Identities=13%  Similarity=0.200  Sum_probs=57.8

Q ss_pred             CCeEEEEecccc-HHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          231 QPLVVDIGSGNG-LFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       231 ~~~vLDIGCG~G-~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      ..++||||||+| ..+..||++ .+.+++++|++..|..           |++.|+.+...+.    -..+|+|+..-|.
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~-----------~v~dDiF~P~~~~----Y~~~DLIYsirPP   99 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG-----------IVRDDITSPRMEI----YRGAALIYSIRPP   99 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT-----------EECCCSSSCCHHH----HTTEEEEEEESCC
T ss_pred             CCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc-----------eEEccCCCCcccc----cCCcCEEEEcCCC
Confidence            579999999999 699999974 2689999999765543           8888886531110    1479999887554


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      |-          +++.+++...+   -|.-+++.+
T Consensus       100 ~E----------l~~~i~~lA~~---v~adliI~p  121 (153)
T 2k4m_A          100 AE----------IHSSLMRVADA---VGARLIIKP  121 (153)
T ss_dssp             TT----------THHHHHHHHHH---HTCEEEEEC
T ss_pred             HH----------HHHHHHHHHHH---cCCCEEEEc
Confidence            42          34444443333   366777764

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.48  E-value=9.5e-05  Score=70.36  Aligned_cols=122  Identities=9%  Similarity=-0.006  Sum_probs=71.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      ....|||||||.|.++...+++.+...++|+|+..........  .--.|+.....++...     .+.+..+|+|...-
T Consensus        90 ~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~-----~l~~~~~DvVLSDm  164 (282)
T 3gcz_A           90 PTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVF-----NMEVIPGDTLLCDI  164 (282)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGG-----GSCCCCCSEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchh-----hcCCCCcCEEEecC
Confidence            3568999999999999999988787789999974321110000  0012444444443221     12467899997643


Q ss_pred             CCCCCCCcchhhh-hhhHHHHHHHHhhccCC--cEEEEEeCc--HHHHHHHHHHHHh
Q 014919          308 PNPDFNRPEHRWR-MVQRSLVEAVSDLLVHD--GKVFLQSDI--EEVMLRMKQQFLE  359 (416)
Q Consensus       308 pdpw~k~~h~krR-l~~~~~l~~i~r~Lkpg--G~l~l~tD~--~~~~~~~~~~~~~  359 (416)
                      .   +...++... .-+-.+|+.+.++|+||  |.|+++.=.  ..-+..+++.|++
T Consensus       165 A---pnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~  218 (282)
T 3gcz_A          165 G---ESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQL  218 (282)
T ss_dssp             C---CCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred             c---cCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHH
Confidence            1   222221110 01124588889999999  999998644  2333445555554

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.39  E-value=0.00079  Score=65.11  Aligned_cols=125  Identities=13%  Similarity=0.050  Sum_probs=79.1

Q ss_pred             CCeEEEEeccccHHHHHHH----HhCCCC--eEEEEch------------HHHHHHHHHHh----CCC--cEEEEEcChh
Q 014919          231 QPLVVDIGSGNGLFLLGMA----RKRKDL--NFLGLEL------------VTHCRDSLQLS----GIT--NGYFIATNAT  286 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA----~~~p~~--~~iGvD~------------~~~a~~~a~~~----~l~--nv~f~~~Da~  286 (416)
                      .-+|||+|+|+|...+...    +..|+.  +++.+|-            .....+.....    .-.  .+.+..+|+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            4579999999998754322    346664  5778872            11111111111    112  3678999999


Q ss_pred             hhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919          287 STFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       287 ~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~  366 (416)
                      +.+++.   .+..+|.+++   |+......+  .+=++++++.++++++|||+|.--|-    .-.+++.|.+.||.+..
T Consensus       177 ~~l~~l---~~~~~Da~fl---DgFsP~kNP--eLWs~e~f~~l~~~~~pgg~laTYta----ag~VRR~L~~aGF~V~k  244 (308)
T 3vyw_A          177 KRIKEV---ENFKADAVFH---DAFSPYKNP--ELWTLDFLSLIKERIDEKGYWVSYSS----SLSVRKSLLTLGFKVGS  244 (308)
T ss_dssp             HHGGGC---CSCCEEEEEE---CCSCTTTSG--GGGSHHHHHHHHTTEEEEEEEEESCC----CHHHHHHHHHTTCEEEE
T ss_pred             HHHhhh---cccceeEEEe---CCCCcccCc--ccCCHHHHHHHHHHhCCCcEEEEEeC----cHHHHHHHHHCCCEEEe
Confidence            876532   3457999977   554222211  24457999999999999999875332    33467788999987654


Q ss_pred             e
Q 014919          367 L  367 (416)
Q Consensus       367 ~  367 (416)
                      .
T Consensus       245 ~  245 (308)
T 3vyw_A          245 S  245 (308)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.32  E-value=0.00074  Score=64.45  Aligned_cols=74  Identities=11%  Similarity=0.019  Sum_probs=57.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhc-cCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~-~~~~s~D~v~~~  306 (416)
                      .+.++||.+||.|.++..++++  +.+++|+|....|++.+++..-++++++++|..++ +..+. ...+++|.|++.
T Consensus        22 ~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l-~~~L~~~g~~~vDgIL~D   96 (285)
T 1wg8_A           22 PGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHL-KRHLAALGVERVDGILAD   96 (285)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGH-HHHHHHTTCSCEEEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchH-HHHHHHcCCCCcCEEEeC
Confidence            3689999999999999999998  77999999988887776552115899999999987 33332 123579998764

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.11  E-value=0.00058  Score=65.36  Aligned_cols=122  Identities=9%  Similarity=-0.031  Sum_probs=70.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH-hC-CCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL-SG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~-~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+..||||||++|.++..++++.+-..++|+|+.......... .. -.++.....++...     .+..+.+|+|...-
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~-----~l~~~~~DlVlsD~  155 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVF-----TMPTEPSDTLLCDI  155 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTT-----TSCCCCCSEEEECC
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceee-----ecCCCCcCEEeecC
Confidence            4789999999999999999987776788999973211000000 00 01333333332211     11467899997742


Q ss_pred             CCCCCCCcchhh-hhhhHHHHHHHHhhccCC-cEEEEEeCc--HHHHHHHHHHHHh
Q 014919          308 PNPDFNRPEHRW-RMVQRSLVEAVSDLLVHD-GKVFLQSDI--EEVMLRMKQQFLE  359 (416)
Q Consensus       308 pdpw~k~~h~kr-Rl~~~~~l~~i~r~Lkpg-G~l~l~tD~--~~~~~~~~~~~~~  359 (416)
                      .   |...++.. ..-+-.+|+.+.++|+|| |.|+++.=.  ..-...+++.|++
T Consensus       156 A---PnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~  208 (300)
T 3eld_A          156 G---ESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQL  208 (300)
T ss_dssp             C---CCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHH
T ss_pred             c---CCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHH
Confidence            1   22222111 111124588889999999 999998544  2333444555554

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.05  E-value=0.0023  Score=61.17  Aligned_cols=108  Identities=14%  Similarity=0.078  Sum_probs=68.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH---HHHHhCCCcEEEEEc-ChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD---SLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~---~a~~~~l~nv~f~~~-Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +..||||||++|.++...|.+..-..|+|+|+-..-..   ..+..+-..|.|..+ |+..+       .+..+|.|.+-
T Consensus        95 ~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l-------~~~~~D~ivcD  167 (321)
T 3lkz_A           95 VGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYR-------PSECCDTLLCD  167 (321)
T ss_dssp             CEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSS-------CCCCCSEEEEC
T ss_pred             CCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhC-------CCCCCCEEEEE
Confidence            56999999999999998888876678999996221000   000112234888888 88766       24669998875


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCC-cEEEEEeCcH
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQSDIE  347 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~Lkpg-G~l~l~tD~~  347 (416)
                      .-..-+...-...|-+  ..|+.+.++|++| |.|+++.-.+
T Consensus       168 igeSs~~~~ve~~Rtl--~vLel~~~wL~~~~~~f~~KVl~p  207 (321)
T 3lkz_A          168 IGESSSSAEVEEHRTI--RVLEMVEDWLHRGPREFCVKVLCP  207 (321)
T ss_dssp             CCCCCSCHHHHHHHHH--HHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             CccCCCChhhhhhHHH--HHHHHHHHHhccCCCcEEEEEcCC
Confidence            3211100000111211  4688889999999 9999986554

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.02  E-value=0.00054  Score=63.52  Aligned_cols=105  Identities=13%  Similarity=0.101  Sum_probs=69.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH---HHHHhCCCcEEEEEc-ChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD---SLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~---~a~~~~l~nv~f~~~-Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +..||||||++|.++...+.+.....|+|+|+-..-.+   ..+..|-..|+|.++ |+..+       ++..+|.|.+-
T Consensus        79 g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~-------~~~~~DtllcD  151 (267)
T 3p8z_A           79 EGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYL-------PPEKCDTLLCD  151 (267)
T ss_dssp             CEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGC-------CCCCCSEEEEC
T ss_pred             CCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeec-------CCccccEEEEe
Confidence            56999999999999998888877778999996221000   011235567999999 98665       34679999875


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      .-..-+...-...|-+  ..|+.+.++|++ |.|+++.-
T Consensus       152 IgeSs~~~~vE~~Rtl--rvLela~~wL~~-~~fc~KVl  187 (267)
T 3p8z_A          152 IGESSPSPTVEESRTI--RVLKMVEPWLKN-NQFCIKVL  187 (267)
T ss_dssp             CCCCCSCHHHHHHHHH--HHHHHHGGGCSS-CEEEEEES
T ss_pred             cCCCCCChhhhhhHHH--HHHHHHHHhccc-CCEEEEEc
Confidence            3211100000111221  478888999999 88888753

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=96.89  E-value=0.0032  Score=62.31  Aligned_cols=68  Identities=7%  Similarity=0.103  Sum_probs=51.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+.++|||||.+|.++..++++  ...|+|||.....-.   ....++|.++++|+..+.    + ....+|.|++-.
T Consensus       211 ~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~---l~~~~~V~~~~~d~~~~~----~-~~~~~D~vvsDm  278 (375)
T 4auk_A          211 NGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQS---LMDTGQVTWLREDGFKFR----P-TRSNISWMVCDM  278 (375)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHH---HHTTTCEEEECSCTTTCC----C-CSSCEEEEEECC
T ss_pred             CCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChh---hccCCCeEEEeCcccccc----C-CCCCcCEEEEcC
Confidence            3789999999999999999988  679999995321111   123478999999998762    1 356899997743

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.65  E-value=0.0036  Score=58.77  Aligned_cols=97  Identities=15%  Similarity=0.034  Sum_probs=60.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC----CeEEEEchHHHHHHHHHHhCC----Cc---EEEEEc-ChhhhhhhhhccCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKD----LNFLGLELVTHCRDSLQLSGI----TN---GYFIAT-NATSTFRSIVASYP  297 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~----~~~iGvD~~~~a~~~a~~~~l----~n---v~f~~~-Da~~l~~~~~~~~~  297 (416)
                      .+..|||+||+.|.++...+++.+-    ..++|+|+ .       ...+    .+   +.|.++ |+.++       .+
T Consensus        73 pg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-------~~P~~~~~~Gv~~i~~~~G~Df~~~-------~~  137 (269)
T 2px2_A           73 PIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-------EEPMLMQSYGWNIVTMKSGVDVFYK-------PS  137 (269)
T ss_dssp             CCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-------CCCCCCCSTTGGGEEEECSCCGGGS-------CC
T ss_pred             CCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-------cCCCcccCCCceEEEeeccCCccCC-------CC
Confidence            3789999999999999988876211    23445552 0       1111    23   356657 98775       35


Q ss_pred             CceeEEEEECCCCCCCCcch---hhhhhhHHHHHHHHhhccCCc-EEEEEeCc
Q 014919          298 GKLILVSIQCPNPDFNRPEH---RWRMVQRSLVEAVSDLLVHDG-KVFLQSDI  346 (416)
Q Consensus       298 ~s~D~v~~~fpdpw~k~~h~---krRl~~~~~l~~i~r~LkpgG-~l~l~tD~  346 (416)
                      ..+|.|.+-.   =|...+.   .-|.+  ..|+-+.++|+||| .|+++.=.
T Consensus       138 ~~~DvVLSDM---APnSG~~~vD~~Rs~--~aL~~A~~~Lk~gG~~FvvKVFq  185 (269)
T 2px2_A          138 EISDTLLCDI---GESSPSAEIEEQRTL--RILEMVSDWLSRGPKEFCIKILC  185 (269)
T ss_dssp             CCCSEEEECC---CCCCSCHHHHHHHHH--HHHHHHHHHHTTCCSEEEEEESC
T ss_pred             CCCCEEEeCC---CCCCCccHHHHHHHH--HHHHHHHHHhhcCCcEEEEEECC
Confidence            6799997643   2222221   11222  25777789999999 88887543

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.64  E-value=0.0034  Score=61.34  Aligned_cols=76  Identities=12%  Similarity=0.017  Sum_probs=59.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccC--CCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY--PGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~--~~s~D~v~~~  306 (416)
                      .+.++||..||.|.++..++++. |+.+++|+|....|++.+++....++++++++..++ .+.++..  .+++|.|++.
T Consensus        57 pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l-~~~L~~~g~~~~vDgILfD  135 (347)
T 3tka_A           57 PDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSAL-GEYVAERDLIGKIDGILLD  135 (347)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGH-HHHHHHTTCTTCEEEEEEE
T ss_pred             CCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHH-HHHHHhcCCCCcccEEEEC
Confidence            46899999999999999999884 788999999988888877433335799999999887 3333211  1369999765

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=96.57  E-value=0.0083  Score=62.40  Aligned_cols=126  Identities=16%  Similarity=0.153  Sum_probs=77.0

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-------------CCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhh-hhh
Q 014919          231 QPLVVDIGSGNGLFLLGMARKR-------------KDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTF-RSI  292 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~-------------p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~-~~~  292 (416)
                      +.+|+|-.||+|.|++...+..             ...+++|+|+...+    ..++.-++..+-.+.++|..... .+.
T Consensus       218 ~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~~  297 (530)
T 3ufb_A          218 GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLREM  297 (530)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGGC
T ss_pred             CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhhh
Confidence            5689999999999998876531             13579999964433    33333467766667788875431 111


Q ss_pred             hccCCCceeEEEEECCCCCCCCcch----------hhhhhhHHHHHHHHhhcc-------CCcEEEEEeCcHHH-----H
Q 014919          293 VASYPGKLILVSIQCPNPDFNRPEH----------RWRMVQRSLVEAVSDLLV-------HDGKVFLQSDIEEV-----M  350 (416)
Q Consensus       293 ~~~~~~s~D~v~~~fpdpw~k~~h~----------krRl~~~~~l~~i~r~Lk-------pgG~l~l~tD~~~~-----~  350 (416)
                      .  ....||+|..|  .||-.....          +..-.+-.|++.+.+.||       |||++.+.+.+..+     .
T Consensus       298 ~--~~~~fD~Il~N--PPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~  373 (530)
T 3ufb_A          298 G--DKDRVDVILTN--PPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGIS  373 (530)
T ss_dssp             C--GGGCBSEEEEC--CCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHH
T ss_pred             c--ccccceEEEec--CCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchH
Confidence            1  23579999998  454221100          000113468888999887       69999887655433     2


Q ss_pred             HHHHHHHHhC
Q 014919          351 LRMKQQFLEY  360 (416)
Q Consensus       351 ~~~~~~~~~~  360 (416)
                      ..+++.+.+.
T Consensus       374 ~~iRk~Lle~  383 (530)
T 3ufb_A          374 ARIKEELLKN  383 (530)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhc
Confidence            3455555443

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.32  E-value=0.0076  Score=64.51  Aligned_cols=126  Identities=12%  Similarity=0.101  Sum_probs=79.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhC-------CC-----CeEEEEch---H----HHHHH-----------HHHHh-----C-
Q 014919          231 QPLVVDIGSGNGLFLLGMARKR-------KD-----LNFLGLEL---V----THCRD-----------SLQLS-----G-  274 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~-------p~-----~~~iGvD~---~----~~a~~-----------~a~~~-----~-  274 (416)
                      .-+|+|+|+|+|...+.+.+.+       |+     .+|+.+|.   .    .++++           ..+..     | 
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            4689999999999988876642       33     57999993   1    12211           11111     1 


Q ss_pred             ----C----CcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          275 ----I----TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       275 ----l----~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                          +    -.+.++.+|+.+.+++.-......+|.+|+   |+......+  .+-+.+++..+.++++|||.+.--+-.
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~fl---D~f~p~~np--~~w~~~~~~~l~~~~~~g~~~~t~~~~  213 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFL---DGFAPAKNP--DMWNEQLFNAMARMTRPGGTFSTFTAA  213 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEE---CSSCC--CC--TTCSHHHHHHHHHHEEEEEEEEESCCC
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEE---CCCCCCCCh--hhhhHHHHHHHHHHhCCCCEEEeccCc
Confidence                1    147889999998865421101468999977   333111100  123469999999999999998764433


Q ss_pred             HHHHHHHHHHHHhCCCCce
Q 014919          347 EEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~  365 (416)
                          ....+.+.+.|+...
T Consensus       214 ----~~vr~~l~~aGf~~~  228 (689)
T 3pvc_A          214 ----GFVRRGLQQAGFNVT  228 (689)
T ss_dssp             ----HHHHHHHHHTTCEEE
T ss_pred             ----HHHHHHHHhCCeEEE
Confidence                346677888888643

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.22  E-value=0.011  Score=62.91  Aligned_cols=125  Identities=14%  Similarity=0.079  Sum_probs=77.9

Q ss_pred             CCeEEEEeccccHHHHHHHHh-------CCC-----CeEEEEch---HH----HHHH-----------HHHHh-----C-
Q 014919          231 QPLVVDIGSGNGLFLLGMARK-------RKD-----LNFLGLEL---VT----HCRD-----------SLQLS-----G-  274 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~-------~p~-----~~~iGvD~---~~----~a~~-----------~a~~~-----~-  274 (416)
                      .-+|+|+|+|+|...+...+.       +|+     .+|+++|.   ..    ++++           .....     + 
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            468999999999987776543       333     46999993   22    1221           11111     1 


Q ss_pred             --------CCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          275 --------ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       275 --------l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                              --.+.+..+|+.+.+++.-......+|.+|+   |++.....  ..+-+.++++.++++++|||.+...+-.
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~---D~f~p~~n--p~~w~~~~~~~l~~~~~~g~~~~t~~~~  221 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFL---DGFAPAKN--PDMWTQNLFNAMARLARPGGTLATFTSA  221 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEE---CCSCGGGC--GGGSCHHHHHHHHHHEEEEEEEEESCCC
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEE---CCCCCcCC--hhhhhHHHHHHHHHHhCCCCEEEeccCc
Confidence                    1236688899988765431111467999977   44321111  1233579999999999999998865433


Q ss_pred             HHHHHHHHHHHHhCCCCc
Q 014919          347 EEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~  364 (416)
                          ....+.+.+.|+..
T Consensus       222 ----~~vr~~L~~aGf~v  235 (676)
T 3ps9_A          222 ----GFVRRGLQDAGFTM  235 (676)
T ss_dssp             ----HHHHHHHHHHTCEE
T ss_pred             ----HHHHHHHHhCCeEE
Confidence                24566777778754

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.73  E-value=0.026  Score=53.89  Aligned_cols=85  Identities=13%  Similarity=0.098  Sum_probs=54.4

Q ss_pred             CCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcch------hhh------hh--hHHHHHHHHhhccCCcEE
Q 014919          275 ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH------RWR------MV--QRSLVEAVSDLLVHDGKV  340 (416)
Q Consensus       275 l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~------krR------l~--~~~~l~~i~r~LkpgG~l  340 (416)
                      +.+++++++|+.+.+.. +  ++++||+|+.+  .|+......      .+.      ..  ...+++++.++|||||.+
T Consensus        19 ~~~~~i~~gD~~~~l~~-l--~~~s~DlIvtd--PPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l   93 (297)
T 2zig_A           19 FGVHRLHVGDAREVLAS-F--PEASVHLVVTS--PPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRL   93 (297)
T ss_dssp             --CEEEEESCHHHHHTT-S--CTTCEEEEEEC--CCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ccCCEEEECcHHHHHhh-C--CCCceeEEEEC--CCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence            45789999999986442 3  47899999987  455422110      000      00  135678999999999999


Q ss_pred             EEEeCcH-------------HHHHHHHHHHHhCCCCc
Q 014919          341 FLQSDIE-------------EVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       341 ~l~tD~~-------------~~~~~~~~~~~~~~~~~  364 (416)
                      ++..++.             ++...+...+++.||..
T Consensus        94 ~i~~~d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~  130 (297)
T 2zig_A           94 VIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDN  130 (297)
T ss_dssp             EEEECCEEEECC----EEEECHHHHHHHHHHHTTCEE
T ss_pred             EEEECCCccccccCCcccccccHHHHHHHHHHcCCee
Confidence            9876532             12345666788888753

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=95.57  E-value=0.042  Score=52.56  Aligned_cols=100  Identities=11%  Similarity=0.091  Sum_probs=64.5

Q ss_pred             CCCCeEEEEec------cccHHHHHHHHhCCC-CeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          229 PAQPLVVDIGS------GNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       229 ~~~~~vLDIGC------G~G~~~~~lA~~~p~-~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      |.+.+|||+|+      -.|.+  .+.+..|. ..++++|+....       ...+ .++++|.....      ..+.+|
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~-------sda~-~~IqGD~~~~~------~~~k~D  171 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV-------SDAD-STLIGDCATVH------TANKWD  171 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB-------CSSS-EEEESCGGGEE------ESSCEE
T ss_pred             cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc-------cCCC-eEEEccccccc------cCCCCC
Confidence            35899999995      77874  45566786 699999974311       1123 55999987651      247899


Q ss_pred             EEEEECCCCCCCCcchhh-hh--hhHHHHHHHHhhccCCcEEEEEe
Q 014919          302 LVSIQCPNPDFNRPEHRW-RM--VQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~kr-Rl--~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +|..-..++-......-+ |.  +-+..++-+.++|+|||.|.++.
T Consensus       172 LVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKV  217 (344)
T 3r24_A          172 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  217 (344)
T ss_dssp             EEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEE
Confidence            997643222111111111 12  23567788899999999999984

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.51  E-value=0.069  Score=50.21  Aligned_cols=102  Identities=13%  Similarity=0.157  Sum_probs=70.7

Q ss_pred             CCeEEEEeccccHHHHHHHHh-------CCCCeEEEEch-------HH--------------------HHHHHH-H----
Q 014919          231 QPLVVDIGSGNGLFLLGMARK-------RKDLNFLGLEL-------VT--------------------HCRDSL-Q----  271 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~-------~p~~~~iGvD~-------~~--------------------~a~~~a-~----  271 (416)
                      ...++|+||-.|..+..+|+.       +++.+++|+|.       .+                    .-.++. +    
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            578999999999999987753       47889999992       00                    001111 1    


Q ss_pred             --HhCC--CcEEEEEcChhhhhhhhhcc-CCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          272 --LSGI--TNGYFIATNATSTFRSIVAS-YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       272 --~~~l--~nv~f~~~Da~~l~~~~~~~-~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                        ..+.  +|++++.+++.+.++.++.. +...+|.+++-. | +    ..    -....++.+...|+|||.+++
T Consensus       150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~-D-~----Y~----~t~~~le~~~p~l~~GGvIv~  215 (257)
T 3tos_A          150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL-D-L----YE----PTKAVLEAIRPYLTKGSIVAF  215 (257)
T ss_dssp             TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC-C-C----HH----HHHHHHHHHGGGEEEEEEEEE
T ss_pred             hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC-c-c----cc----hHHHHHHHHHHHhCCCcEEEE
Confidence              1232  68999999999987665321 345799998853 2 1    00    123678899999999999988

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=95.50  E-value=0.021  Score=56.19  Aligned_cols=58  Identities=14%  Similarity=-0.013  Sum_probs=44.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-CCCcEEEEEcChhhh
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GITNGYFIATNATST  288 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-~l~nv~f~~~Da~~l  288 (416)
                      +..|||||.|.|.++..|+++....++++||+........++. ..+|++++.+|+..+
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence            5889999999999999999875445899999755444433321 346899999999765

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.44  E-value=0.046  Score=53.00  Aligned_cols=84  Identities=15%  Similarity=0.066  Sum_probs=55.4

Q ss_pred             CcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCc--------chhhhhhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919          276 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP--------EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  347 (416)
Q Consensus       276 ~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~--------h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~  347 (416)
                      ++.+++++|+.+.+. .+  +++++|+|++.  .|+....        +...-......+++++++|+|||.+++..++.
T Consensus        13 ~~~~ii~gD~~~~l~-~l--~~~svDlI~tD--PPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           13 SNGSMYIGDSLELLE-SF--PEESISLVMTS--PPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             SSEEEEESCHHHHGG-GS--CSSCEEEEEEC--CCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CCceEEeCcHHHHHh-hC--CCCCeeEEEEC--CCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            457899999988654 23  47899999885  4443221        00000112477889999999999999987754


Q ss_pred             ----------HHHHHHHHHHHhCCCCc
Q 014919          348 ----------EVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       348 ----------~~~~~~~~~~~~~~~~~  364 (416)
                                .....+++.++..|+..
T Consensus        88 ~~~g~~~~~~~~~~~i~~~~~~~Gf~~  114 (323)
T 1boo_A           88 YMKGVPARSIYNFRVLIRMIDEVGFFL  114 (323)
T ss_dssp             EETTEEEECCHHHHHHHHHHHTTCCEE
T ss_pred             ecCCCcccccchHHHHHHHHHhCCCEE
Confidence                      13445566677887653

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.43  E-value=0.023  Score=54.39  Aligned_cols=37  Identities=32%  Similarity=0.394  Sum_probs=30.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD  268 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~  268 (416)
                      .+.+|||++||+|..++.+++.  +.+++|+|+...+.+
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~  271 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQ  271 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHH
Confidence            4789999999999999998876  569999997554433

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=94.55  E-value=0.1  Score=48.69  Aligned_cols=80  Identities=15%  Similarity=0.111  Sum_probs=50.8

Q ss_pred             EEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCC-c-------chhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919          278 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR-P-------EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  349 (416)
Q Consensus       278 v~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~-~-------h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~  349 (416)
                      .+++++|+.+.+.. +  +++++|+|++.  .|+... .       +....-.....++++.++|+|||.+++..+... 
T Consensus         5 ~~l~~gD~~~~l~~-l--~~~~vdlI~~D--PPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~~-   78 (260)
T 1g60_A            5 NKIHQMNCFDFLDQ-V--ENKSVQLAVID--PPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFN-   78 (260)
T ss_dssp             SSEEECCHHHHHHH-S--CTTCEEEEEEC--CCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHH-
T ss_pred             CeEEechHHHHHHh-c--cccccCEEEEC--CCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcHH-
Confidence            46789999887653 3  46799999875  344322 1       000001234678889999999999999865432 


Q ss_pred             HHHHHHHHHhCCCC
Q 014919          350 MLRMKQQFLEYGKG  363 (416)
Q Consensus       350 ~~~~~~~~~~~~~~  363 (416)
                      ...+...+.+.+|.
T Consensus        79 ~~~~~~~~~~~gf~   92 (260)
T 1g60_A           79 CAFICQYLVSKGMI   92 (260)
T ss_dssp             HHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHhhccc
Confidence            23345566666664

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=94.49  E-value=0.1  Score=50.90  Aligned_cols=129  Identities=10%  Similarity=0.034  Sum_probs=75.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCC-CeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      ..+++|+-||.|.+.+.+.++.-+ ..++++|+...|.+..+.+ .++..++++|+.++....++  ...+|+++..+|=
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N-~~~~~~~~~Di~~~~~~~~~--~~~~D~l~~gpPC   78 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN-FPHTQLLAKTIEGITLEEFD--RLSFDMILMSPPC   78 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH-CTTSCEECSCGGGCCHHHHH--HHCCSEEEECCC-
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHh-ccccccccCCHHHccHhHcC--cCCcCEEEEcCCC
Confidence            357999999999999999887321 3689999988888776544 34556789999887433231  2268999987652


Q ss_pred             -CCCCCcchhh----h-hhhHHHHHHHHhhcc--CCcEEEEE--eC--cHHHHHHHHHHHHhCCCCc
Q 014919          310 -PDFNRPEHRW----R-MVQRSLVEAVSDLLV--HDGKVFLQ--SD--IEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       310 -pw~k~~h~kr----R-l~~~~~l~~i~r~Lk--pgG~l~l~--tD--~~~~~~~~~~~~~~~~~~~  364 (416)
                       ++....+.+.    | -....++ ++.+.++  |.- +++.  ..  ....+..+++.|++.|+..
T Consensus        79 q~fS~ag~~~g~~d~r~~l~~~~~-~~i~~~~~~P~~-~~~ENV~~l~~~~~~~~i~~~l~~~GY~v  143 (343)
T 1g55_A           79 QPFTRIGRQGDMTDSRTNSFLHIL-DILPRLQKLPKY-ILLENVKGFEVSSTRDLLIQTIENCGFQY  143 (343)
T ss_dssp             -----------------CHHHHHH-HHGGGCSSCCSE-EEEEEETTGGGSHHHHHHHHHHHHTTEEE
T ss_pred             cchhhcCCcCCccCccchHHHHHH-HHHHHhcCCCCE-EEEeCCccccCHHHHHHHHHHHHHCCCee
Confidence             2222111110    1 1112333 3344555  653 3331  11  1246677888888888653

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=94.05  E-value=0.4  Score=47.42  Aligned_cols=129  Identities=12%  Similarity=0.039  Sum_probs=79.2

Q ss_pred             CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhc---cCCCceeEEEEECC
Q 014919          232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA---SYPGKLILVSIQCP  308 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~---~~~~s~D~v~~~fp  308 (416)
                      -+++|+-||.|.+.+.+.++. -..+.++|+...|.+..+.+ .++..++++|+.++..+.+.   .....+|+|+..+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG-~~~v~avE~d~~a~~t~~~N-~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP   80 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG-FDVKMAVEIDQHAINTHAIN-FPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP   80 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT-CEEEEEECSCHHHHHHHHHH-CTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred             CeEEEEccCcCHHHHHHHHCC-CcEEEEEeCCHHHHHHHHHh-CCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence            469999999999999998873 22466999988887765543 45778889999886322110   02467999988765


Q ss_pred             CCCCCCcc-----hhhhhhhHHHHHHHHhhccCCcEEE------EEeCcHHHHHHHHHHHHhCCCCc
Q 014919          309 NPDFNRPE-----HRWRMVQRSLVEAVSDLLVHDGKVF------LQSDIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       309 dpw~k~~h-----~krRl~~~~~l~~i~r~LkpgG~l~------l~tD~~~~~~~~~~~~~~~~~~~  364 (416)
                      =.-+....     ..|.-+...+++ +.+.++|.-.++      +..+...+++.++ .|++.|+..
T Consensus        81 CQ~fS~ag~~~~~d~r~~L~~~~~~-~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v  145 (376)
T 3g7u_A           81 CQGFSSIGKGNPDDSRNQLYMHFYR-LVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDI  145 (376)
T ss_dssp             CCTTC-------CHHHHHHHHHHHH-HHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEE
T ss_pred             CCCcccccCCCCCCchHHHHHHHHH-HHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCCCcc
Confidence            22222111     111111234443 444568854443      1234456788888 888887654

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=93.85  E-value=0.2  Score=48.96  Aligned_cols=95  Identities=18%  Similarity=0.189  Sum_probs=63.7

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc---ChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~---Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..||-+|||. |..++.+|+......++++|.+..-++.+++.|.+.+  +..   |..+.+.+.   .++.+|.|+-
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v--i~~~~~~~~~~~~~~---~~gg~D~vid  264 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHV--INSKTQDPVAAIKEI---TDGGVNFALE  264 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEE--EETTTSCHHHHHHHH---TTSCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEE--ecCCccCHHHHHHHh---cCCCCcEEEE
Confidence            368999999987 8889999987643379999987666666667776532  222   221111222   2347998865


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .-..              +..++...+.|+++|++.+.
T Consensus       265 ~~g~--------------~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          265 STGS--------------PEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             CSCC--------------HHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCC--------------HHHHHHHHHHHhcCCEEEEe
Confidence            4211              25678889999999998874

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=93.83  E-value=0.42  Score=45.37  Aligned_cols=121  Identities=16%  Similarity=0.123  Sum_probs=81.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      +..+||+=+|+|.+++++.+  +..+++.+|....+.+..+++  ..+++++++.|+...+....| +...+|+|++   
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~-~~~~fdLVfi---  165 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLP-PPEKRGLIFI---  165 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCS-CTTSCEEEEE---
T ss_pred             CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcC-CCCCccEEEE---
Confidence            46689999999999999887  357899999877777665433  235799999998776554433 3457999987   


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHh--hccCCcEEEEEeC--cHHHHHHHHHHHHhCCC
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSD--IEEVMLRMKQQFLEYGK  362 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r--~LkpgG~l~l~tD--~~~~~~~~~~~~~~~~~  362 (416)
                      ||-+....     ...+.++.+.+  .+.|+|.+.+-..  ...-.+.|.+.+++.+.
T Consensus       166 DPPYe~k~-----~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~  218 (283)
T 2oo3_A          166 DPSYERKE-----EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISS  218 (283)
T ss_dssp             CCCCCSTT-----HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCS
T ss_pred             CCCCCCCc-----HHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCC
Confidence            56333211     11244544444  4578999888643  23345677777776655

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=93.39  E-value=0.28  Score=47.73  Aligned_cols=98  Identities=13%  Similarity=0.050  Sum_probs=63.8

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcC---hhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATN---ATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~D---a~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..||-+|+|. |..++.+|+.....+++++|.+..-++.+++.|.+.+  +..+   ..++...........+|.++-
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v--i~~~~~~~~~~~~~i~~~~~~g~D~vid  248 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLV--LQISKESPQEIARKVEGQLGCKPEVTIE  248 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEE--EECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEE--EcCcccccchHHHHHHHHhCCCCCEEEE
Confidence            367899999986 8889999988743389999987666666667776533  3322   122211111101246898865


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .-..              +..++...+.|+|+|++.+.
T Consensus       249 ~~g~--------------~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          249 CTGA--------------EASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             CSCC--------------HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCCC--------------hHHHHHHHHHhcCCCEEEEE
Confidence            4211              25678889999999998874

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=93.03  E-value=0.23  Score=48.01  Aligned_cols=98  Identities=14%  Similarity=0.136  Sum_probs=66.2

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+..||=+|+|. |..++.+|+.....+++++|.+..-++.+++.|.+.+.-...|..+.+.+..  ....+|.++-.-.
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t--~g~g~d~v~d~~G  248 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELT--GGQGATAVFDFVG  248 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHH--GGGCEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHh--CCCCCeEEEECCC
Confidence            468899999986 8888999988767899999987766677777776543221222222112222  1236898865322


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .              +..++...+.|+++|++.+.
T Consensus       249 ~--------------~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          249 A--------------QSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             C--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             C--------------HHHHHHHHHHHhcCCEEEEE
Confidence            1              25788899999999998874

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=92.88  E-value=0.17  Score=43.70  Aligned_cols=105  Identities=13%  Similarity=0.130  Sum_probs=65.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      ..-|||+|-|+|..--.|.+.+|+..++.+|....+.-   ..-.+.=.++.+|+.+.++...+.-.....+++.-+--.
T Consensus        41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp---~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~LaHaD~G~g  117 (174)
T 3iht_A           41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHP---DSTPPEAQLILGDIRETLPATLERFGATASLVHADLGGH  117 (174)
T ss_dssp             CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCG---GGCCCGGGEEESCHHHHHHHHHHHHCSCEEEEEECCCCS
T ss_pred             CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCC---CCCCchHheecccHHHHHHHHHHhcCCceEEEEeecCCC
Confidence            56799999999999999999999999999995221111   011233468899999876542110144555565543211


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                         .+ .|.-.....+-..+..+|.|||.++-
T Consensus       118 ---~~-~~d~a~a~~lsplI~~~la~GGi~vS  145 (174)
T 3iht_A          118 ---NR-EKNDRFARLISPLIEPHLAQGGLMVS  145 (174)
T ss_dssp             ---CH-HHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ---Cc-chhHHHHHhhhHHHHHHhcCCcEEEe
Confidence               11 11111112334567889999998764

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=92.44  E-value=0.22  Score=49.27  Aligned_cols=107  Identities=11%  Similarity=-0.028  Sum_probs=64.3

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc---Ch-hhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT---NA-TSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~---Da-~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..||-+|||. |.+++.+|+.....+++++|.+..-++.+++.|..   .+..   |. .+.+.+..  ....+|.++
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~---~i~~~~~~~~~~~~~~~~--~g~g~Dvvi  259 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFE---TIDLRNSAPLRDQIDQIL--GKPEVDCGV  259 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCE---EEETTSSSCHHHHHHHHH--SSSCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc---EEcCCCcchHHHHHHHHh--CCCCCCEEE
Confidence            368899999987 89999999976433899999876666666666652   2322   21 11112222  123699987


Q ss_pred             EECCCCCCCCcchh--hhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHR--WRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~k--rRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      -.-..++.  .+..  -.+..+..++...+.|+++|++.+.
T Consensus       260 d~~g~~~~--~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          260 DAVGFEAH--GLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             ECSCTTCB--CSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             ECCCCccc--cccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence            54332210  0000  0000024678889999999998753

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=92.22  E-value=0.3  Score=47.15  Aligned_cols=65  Identities=8%  Similarity=0.070  Sum_probs=43.5

Q ss_pred             EEEE-EcChhhhhhhhhccCCCceeEEEEECCCCCCCCc-----chhhhhhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919          278 GYFI-ATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP-----EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  347 (416)
Q Consensus       278 v~f~-~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~-----h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~  347 (416)
                      .+++ ++|+.+.+.. +  +++++|+|++-  .|+....     +...--.....|.++.++|+|||.+++.+|+.
T Consensus        39 ~~l~i~gD~l~~L~~-l--~~~svDlI~tD--PPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~  109 (319)
T 1eg2_A           39 RHVYDVCDCLDTLAK-L--PDDSVQLIICD--PPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ  109 (319)
T ss_dssp             EEEEEECCHHHHHHT-S--CTTCEEEEEEC--CCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred             ceEEECCcHHHHHHh-C--ccCCcCEEEEC--CCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence            5677 9999887653 3  47799999874  3432220     11000012467888999999999999998865

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=92.09  E-value=0.3  Score=47.32  Aligned_cols=96  Identities=16%  Similarity=0.077  Sum_probs=63.2

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc---ChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~---Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..||=+|+|. |..++.+|+.....+++++|.....++.+++.|.+.+  +..   |..+-+.+..  ....+|.++-
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~v--i~~~~~~~~~~v~~~t--~g~g~D~v~d  241 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDI--INYKNGDIVEQILKAT--DGKGVDKVVI  241 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEE--ECGGGSCHHHHHHHHT--TTCCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceE--EcCCCcCHHHHHHHHc--CCCCCCEEEE
Confidence            367888899986 8888889987643489999987766666777776532  222   2222112222  2346998875


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ....+              ..++...+.|+|+|++.+.
T Consensus       242 ~~g~~--------------~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          242 AGGDV--------------HTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             CSSCT--------------THHHHHHHHEEEEEEEEEC
T ss_pred             CCCCh--------------HHHHHHHHHHhcCCEEEEe
Confidence            43222              4578888999999998753

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=91.83  E-value=0.15  Score=47.56  Aligned_cols=37  Identities=22%  Similarity=0.321  Sum_probs=30.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD  268 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~  268 (416)
                      .+.+|||..||+|..+++.++.  +.+++|+|+...+.+
T Consensus       212 ~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~  248 (260)
T 1g60_A          212 PNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVN  248 (260)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHH
Confidence            4789999999999999988776  579999997554443

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=91.45  E-value=0.73  Score=44.55  Aligned_cols=97  Identities=12%  Similarity=0.059  Sum_probs=62.1

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEE--cChhhhhhhhhccC---CCceeEE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIA--TNATSTFRSIVASY---PGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~--~Da~~l~~~~~~~~---~~s~D~v  303 (416)
                      .+..||-+|+|. |..++.+|+.. +++++++|.+..-++.+++.|.+.+--..  .|..+-+.+..  .   ...+|.+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~--~~~~g~g~D~v  244 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERI--RSAIGDLPNVT  244 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHH--HHHSSSCCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHh--ccccCCCCCEE
Confidence            367888899986 88888899876 56799999876666666677765321111  12111111111  1   2468988


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +-.-..              +..++...+.|+++|++.+.
T Consensus       245 id~~g~--------------~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          245 IDCSGN--------------EKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             EECSCC--------------HHHHHHHHHHSCTTCEEEEC
T ss_pred             EECCCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence            654211              24678888999999998874

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=91.30  E-value=1.6  Score=36.07  Aligned_cols=112  Identities=13%  Similarity=0.059  Sum_probs=67.3

Q ss_pred             CCeEEEEeccccHHHHHHHHhC--CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~--p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      ...++=+|||  .++..+|+..  .+..++++|......+.+.+.   .+.++.+|+.+. +..-...-...|.+++..+
T Consensus         7 ~~~viIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~---g~~~i~gd~~~~-~~l~~a~i~~ad~vi~~~~   80 (140)
T 3fwz_A            7 CNHALLVGYG--RVGSLLGEKLLASDIPLVVIETSRTRVDELRER---GVRAVLGNAANE-EIMQLAHLECAKWLILTIP   80 (140)
T ss_dssp             CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT---TCEEEESCTTSH-HHHHHTTGGGCSEEEECCS
T ss_pred             CCCEEEECcC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc---CCCEEECCCCCH-HHHHhcCcccCCEEEEECC
Confidence            3567778885  4555444431  367899999876666655543   457788998653 1110101246888887655


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCC
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~  363 (416)
                      ++-          . ...+-...+.+.|+..++.......+.+    .+++.|..
T Consensus        81 ~~~----------~-n~~~~~~a~~~~~~~~iiar~~~~~~~~----~l~~~G~d  120 (140)
T 3fwz_A           81 NGY----------E-AGEIVASARAKNPDIEIIARAHYDDEVA----YITERGAN  120 (140)
T ss_dssp             CHH----------H-HHHHHHHHHHHCSSSEEEEEESSHHHHH----HHHHTTCS
T ss_pred             ChH----------H-HHHHHHHHHHHCCCCeEEEEECCHHHHH----HHHHCCCC
Confidence            431          1 1234456777889998888877766543    45555543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=90.74  E-value=0.78  Score=44.05  Aligned_cols=96  Identities=15%  Similarity=0.116  Sum_probs=63.6

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+..||-+|+|. |..++.+|+.. +.+++++|.+..-++.+++.|.+.+  +..+-.++.+.... ..+.+|.++....
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~--i~~~~~~~~~~~~~-~~g~~d~vid~~g  241 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVA--VNARDTDPAAWLQK-EIGGAHGVLVTAV  241 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEE--EETTTSCHHHHHHH-HHSSEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEE--EeCCCcCHHHHHHH-hCCCCCEEEEeCC
Confidence            367888899986 99999999986 5699999987766666777776532  22221222111110 1236888865421


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .              ...++...+.|+|+|++.+.
T Consensus       242 ~--------------~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          242 S--------------PKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             C--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             C--------------HHHHHHHHHHhccCCEEEEe
Confidence            1              36788899999999998874

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=90.39  E-value=2.1  Score=41.34  Aligned_cols=123  Identities=11%  Similarity=0.062  Sum_probs=75.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      ..+++|+-||.|.+.+.+.++. -..+.++|+...|.+..+.+- ++..  ++|+.++....+    ..+|+++..+|=.
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG-~~~v~~~e~d~~a~~t~~~N~-~~~~--~~Di~~~~~~~~----~~~D~l~~gpPCQ   82 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNF-GEKP--EGDITQVNEKTI----PDHDILCAGFPCQ   82 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHH-SCCC--BSCGGGSCGGGS----CCCSEEEEECCCT
T ss_pred             CCcEEEECCCcCHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHc-CCCC--cCCHHHcCHhhC----CCCCEEEECCCCC
Confidence            4789999999999999988763 235788998877776654432 1111  689888743322    2589999887633


Q ss_pred             CCCC-cc-----hhh-hhhhHHHHHHHHhhccCCcEEEEE-------eCcHHHHHHHHHHHHhCCCCc
Q 014919          311 DFNR-PE-----HRW-RMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       311 w~k~-~h-----~kr-Rl~~~~~l~~i~r~LkpgG~l~l~-------tD~~~~~~~~~~~~~~~~~~~  364 (416)
                      -+.. ..     ..| .++ ..+++. .+.++|. .+++.       .+....++.+++.|++.|+..
T Consensus        83 ~fS~ag~~~g~~d~r~~L~-~~~~r~-i~~~~P~-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v  147 (327)
T 2c7p_A           83 AFSISGKQKGFEDSRGTLF-FDIARI-VREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSF  147 (327)
T ss_dssp             TTCTTSCCCGGGSTTSCHH-HHHHHH-HHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCC
T ss_pred             CcchhcccCCCcchhhHHH-HHHHHH-HHhccCc-EEEEeCcHHHHhccccHHHHHHHHHHHhCCCEE
Confidence            2322 11     111 122 344443 3446885 34443       122356778888899888653

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=90.30  E-value=0.57  Score=46.75  Aligned_cols=57  Identities=16%  Similarity=0.110  Sum_probs=41.2

Q ss_pred             CCCeEEEEeccccHHHHHHH-HhCCC-CeEEEEchHHH----HHHHHHH---hCC-CcEEEEEcChh
Q 014919          230 AQPLVVDIGSGNGLFLLGMA-RKRKD-LNFLGLELVTH----CRDSLQL---SGI-TNGYFIATNAT  286 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA-~~~p~-~~~iGvD~~~~----a~~~a~~---~~l-~nv~f~~~Da~  286 (416)
                      ++.+++|||++.|.++..+| +..+. .+++++|-...    ..++.+.   ++. +|++++..-+.
T Consensus       226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            47899999999999999988 56665 79999995333    3333433   246 78887765443

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=90.25  E-value=0.88  Score=43.80  Aligned_cols=95  Identities=15%  Similarity=0.209  Sum_probs=62.3

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhC-CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcCh-hhhhhhhhccCCCceeEEEEEC
Q 014919          231 QPLVVDIGSGN-GLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNA-TSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       231 ~~~vLDIGCG~-G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da-~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      +..||-+|+|. |..++.+|+.. |+++++++|.+..-++.+++.|.+.+  +..+- .+......  ....+|.++-.-
T Consensus       171 g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v--i~~~~~~~~~~~~~--~g~g~D~vid~~  246 (344)
T 2h6e_A          171 EPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYV--SEMKDAESLINKLT--DGLGASIAIDLV  246 (344)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEE--ECHHHHHHHHHHHH--TTCCEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEE--eccccchHHHHHhh--cCCCccEEEECC
Confidence            68899999975 77888888874 46789999987665666666776533  21111 11212221  223699886542


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ..              +..++...+.|+|+|++.+.
T Consensus       247 g~--------------~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          247 GT--------------EETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             CC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CC--------------hHHHHHHHHHhhcCCEEEEe
Confidence            11              24678889999999998764

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=90.14  E-value=0.7  Score=45.08  Aligned_cols=95  Identities=12%  Similarity=0.118  Sum_probs=61.7

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc-----ChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-----NATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~-----Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+..||-+|+|. |..++.+|+.....+++++|.+..-++.+++.|.+.+  +..     +..+.+.+..   .+.+|.+
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~v--i~~~~~~~~~~~~~~~~~---~~g~D~v  266 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDF--VNPNDHSEPISQVLSKMT---NGGVDFS  266 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEE--ECGGGCSSCHHHHHHHHH---TSCBSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceE--EeccccchhHHHHHHHHh---CCCCCEE
Confidence            367899999876 8888899988643389999976555555666676533  211     1222112222   2478988


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCC-cEEEEE
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ  343 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~Lkpg-G~l~l~  343 (416)
                      +-.-..              +..++...+.|+++ |++.+.
T Consensus       267 id~~g~--------------~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          267 LECVGN--------------VGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             EECSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             EECCCC--------------HHHHHHHHHHhhcCCcEEEEE
Confidence            654211              25678889999999 998764

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=90.11  E-value=0.63  Score=45.83  Aligned_cols=106  Identities=11%  Similarity=0.064  Sum_probs=64.7

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcC----hhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATN----ATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~D----a~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..||-+|||. |.+++.+|+......++++|.+..-++.+++.|.+   .+..+    ..+.+.+..  ....+|.++
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~---~i~~~~~~~~~~~v~~~t--~g~g~Dvvi  259 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE---IADLSLDTPLHEQIAALL--GEPEVDCAV  259 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE---EEETTSSSCHHHHHHHHH--SSSCEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCc---EEccCCcchHHHHHHHHh--CCCCCCEEE
Confidence            367888899977 88899999987444799999877666677777763   22221    111112222  234699887


Q ss_pred             EECCCCCCCC----cchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNR----PEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~----~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      -.-..+....    .|+.   ..+..++...+.|+++|++.+.
T Consensus       260 d~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          260 DAVGFEARGHGHEGAKHE---APATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             ECCCTTCBCSSTTGGGSB---CTTHHHHHHHHHEEEEEEEEEC
T ss_pred             ECCCCccccccccccccc---chHHHHHHHHHHHhcCCEEEEe
Confidence            5433221000    0000   0124678889999999998763

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=90.07  E-value=1.4  Score=43.02  Aligned_cols=100  Identities=20%  Similarity=0.152  Sum_probs=64.6

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEE-EEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~-f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+..||=+|+|. |.+++.+|+.....+++++|.+..-++.+++.|.+.+. ....|..+.+.+......+.+|.++-..
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~  261 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA  261 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence            367888899976 88889999887544899999877666667777765321 1112222221210001234799886532


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ..              +..++...+.|+++|++.+.
T Consensus       262 G~--------------~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          262 GV--------------AETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             CC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CC--------------HHHHHHHHHHhccCCEEEEE
Confidence            11              26788899999999998874

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=89.88  E-value=0.55  Score=45.38  Aligned_cols=88  Identities=17%  Similarity=0.144  Sum_probs=61.3

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+..||=+|+|. |..++.+|+.. +++++++|.+..-++.+++.|.+.+.   .+...+        ...+|.++-...
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~---~~~~~~--------~~~~D~vid~~g  243 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGVKHFY---TDPKQC--------KEELDFIISTIP  243 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTCSEEE---SSGGGC--------CSCEEEEEECCC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCeec---CCHHHH--------hcCCCEEEECCC
Confidence            467888899986 88889999876 56999999765555566667765443   343322        227898875433


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .+              ..++...+.|+|+|++.+.
T Consensus       244 ~~--------------~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          244 TH--------------YDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             SC--------------CCHHHHHTTEEEEEEEEEC
T ss_pred             cH--------------HHHHHHHHHHhcCCEEEEE
Confidence            22              2466778899999998875

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=89.57  E-value=1.6  Score=42.13  Aligned_cols=128  Identities=10%  Similarity=0.011  Sum_probs=74.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCeE-EEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRK-DLNF-LGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~-iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      ..+++|+-||.|.+...+.+..- -..+ .++|+...|.+..+.+-.. . ++++|+.++..+.++  ...+|+++..+|
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-~-~~~~DI~~~~~~~i~--~~~~Dil~ggpP   85 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-E-VQVKNLDSISIKQIE--SLNCNTWFMSPP   85 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-C-CBCCCTTTCCHHHHH--HTCCCEEEECCC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-C-cccCChhhcCHHHhc--cCCCCEEEecCC
Confidence            46899999999999999887632 2345 6999988887765543222 2 667898887433332  236899998765


Q ss_pred             CCCC--CCcchhhhhh--hHHHHHHHHh-h---c--cCCcEEEEEeCc-----HHHHHHHHHHHHhCCCCc
Q 014919          309 NPDF--NRPEHRWRMV--QRSLVEAVSD-L---L--VHDGKVFLQSDI-----EEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       309 dpw~--k~~h~krRl~--~~~~l~~i~r-~---L--kpgG~l~l~tD~-----~~~~~~~~~~~~~~~~~~  364 (416)
                      =.-+  .....++...  ...++.++.+ +   +  +|- .+++. .+     ...++.+++.|++.|+..
T Consensus        86 CQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~-~~~lE-NV~gl~~~~~~~~i~~~l~~~GY~v  154 (327)
T 3qv2_A           86 CQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPK-HIFIE-NVPLFKESLVFKEIYNILIKNQYYI  154 (327)
T ss_dssp             CTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCS-EEEEE-ECGGGGGSHHHHHHHHHHHHTTCEE
T ss_pred             ccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCC-EEEEE-chhhhcChHHHHHHHHHHHhCCCEE
Confidence            3223  1000000000  1133444444 4   4  453 33332 22     245777888899888753

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=89.57  E-value=1.6  Score=42.33  Aligned_cols=97  Identities=13%  Similarity=-0.017  Sum_probs=61.6

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcC---hhhh---hhhhhccCCCceeE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATN---ATST---FRSIVASYPGKLIL  302 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~D---a~~l---~~~~~~~~~~s~D~  302 (416)
                      .+..||=+|+|. |.+++.+|+......++++|.+..-++.+++. .+.+.-...+   ..++   +.+..  ....+|.
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t--~g~g~Dv  255 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESF--GGIEPAV  255 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHT--SSCCCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHHHHHHHHh--CCCCCCE
Confidence            356788899977 88899999987444599999766655656555 3333222211   1222   12222  2346898


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ++-....              +..++...+.|+++|++.+.
T Consensus       256 vid~~g~--------------~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          256 ALECTGV--------------ESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             EEECSCC--------------HHHHHHHHHHSCTTCEEEEC
T ss_pred             EEECCCC--------------hHHHHHHHHHhcCCCEEEEE
Confidence            8653211              25678889999999999874

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=89.43  E-value=0.71  Score=45.01  Aligned_cols=97  Identities=8%  Similarity=-0.044  Sum_probs=62.0

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEE---cChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~---~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..||=+|+|. |..++.+|+.....+++++|.+..-++.+++.|.+.+--..   .|..+.+.+..   .+.+|.++-
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t---~gg~Dvvid  267 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKT---NGGVDYAVE  267 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHT---TSCBSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHh---CCCCCEEEE
Confidence            367899999975 88888899876434899999765555566667765331111   11222112222   347898865


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCC-cEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~Lkpg-G~l~l~  343 (416)
                      .-..              +..++...+.|+++ |++.+.
T Consensus       268 ~~g~--------------~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          268 CAGR--------------IETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             CSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCC--------------HHHHHHHHHHHhcCCCEEEEE
Confidence            3211              25678889999999 998764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=89.34  E-value=0.68  Score=45.15  Aligned_cols=96  Identities=18%  Similarity=0.236  Sum_probs=62.7

Q ss_pred             CCeEEEEe-cc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          231 QPLVVDIG-SG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       231 ~~~vLDIG-CG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      +..||=+| +| .|..++.+|+.....+++++|....-++.+++.|.+.+--...|..+.+.   ....+.+|.++-...
T Consensus       172 g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~---~~~~~g~Dvvid~~g  248 (363)
T 4dvj_A          172 APAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVA---ALGLGAPAFVFSTTH  248 (363)
T ss_dssp             EEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHH---TTCSCCEEEEEECSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHH---HhcCCCceEEEECCC
Confidence            56788888 54 48899999987567899999987665666667776533111112211111   112457898864311


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                                    .+..++...++|+++|++.+.
T Consensus       249 --------------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          249 --------------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             --------------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             --------------chhhHHHHHHHhcCCCEEEEE
Confidence                          135778899999999998874

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=89.32  E-value=0.91  Score=44.24  Aligned_cols=95  Identities=9%  Similarity=0.077  Sum_probs=61.4

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc-----ChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-----NATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~-----Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+..||=+|+|. |..++.+|+.....+++++|.+..-++.+++.|.+.+  +..     |..+.+.+.   ..+.+|.+
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~v--i~~~~~~~~~~~~~~~~---~~~g~D~v  265 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATEC--VNPQDYKKPIQEVLTEM---SNGGVDFS  265 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEE--ECGGGCSSCHHHHHHHH---TTSCBSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceE--ecccccchhHHHHHHHH---hCCCCcEE
Confidence            367899999876 8888889988643389999976555555666676532  211     122211221   23478988


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCC-cEEEEE
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ  343 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~Lkpg-G~l~l~  343 (416)
                      +-.-..              +..++...+.|+++ |++.+.
T Consensus       266 id~~g~--------------~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          266 FEVIGR--------------LDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             EECSCC--------------HHHHHHHHHHBCTTTCEEEEC
T ss_pred             EECCCC--------------HHHHHHHHHHhhcCCcEEEEe
Confidence            654211              25678889999999 998763

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=88.80  E-value=0.96  Score=44.13  Aligned_cols=97  Identities=11%  Similarity=0.056  Sum_probs=61.4

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEE---cChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~---~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..||=+|+|. |.+++.+|+.....+++++|.+..-++.+++.|.+.+--..   .|..+.+.+..   .+.+|.++-
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~---~~g~Dvvid  271 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELT---AGGVDYSLD  271 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHH---TSCBSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHh---CCCccEEEE
Confidence            367899999875 88888999887433899999765555556666765321001   11222112222   247898864


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCC-cEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~Lkpg-G~l~l~  343 (416)
                      .-..              +..++...+.|+++ |++.+.
T Consensus       272 ~~G~--------------~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          272 CAGT--------------AQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             SSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCC--------------HHHHHHHHHHhhcCCCEEEEE
Confidence            3211              25678889999999 998763

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=88.75  E-value=0.84  Score=44.44  Aligned_cols=97  Identities=11%  Similarity=0.067  Sum_probs=61.4

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEE---cChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~---~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..||=+|+|. |..++.+|+.....+++++|.+..-++.+++.|.+.+--..   .|..+.+.+.   ..+.+|.++-
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~---~~~g~D~vid  266 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEM---TDGGVDYSFE  266 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHH---TTSCBSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHH---hCCCCCEEEE
Confidence            367889999876 78888888876433899999765555556666765331101   1122211222   2347898865


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCC-cEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~Lkpg-G~l~l~  343 (416)
                      ....              +..++...+.|+++ |++.+.
T Consensus       267 ~~g~--------------~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          267 CIGN--------------VKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             CSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCc--------------HHHHHHHHHhhccCCcEEEEE
Confidence            4211              25678889999999 998763

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=88.70  E-value=1.1  Score=43.97  Aligned_cols=96  Identities=18%  Similarity=0.092  Sum_probs=62.6

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcC---hhhh---hhhhhccCCCceeE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATN---ATST---FRSIVASYPGKLIL  302 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~D---a~~l---~~~~~~~~~~s~D~  302 (416)
                      .+..||-+|+|. |..++.+|+.....+++++|.+..-++.+++.|.+.+  +..+   -.++   +.+..  ....+|.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~v--i~~~~~~~~~~~~~v~~~~--~g~g~Dv  270 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLT--LNRRETSVEERRKAIMDIT--HGRGADF  270 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEE--EETTTSCHHHHHHHHHHHT--TTSCEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEE--EeccccCcchHHHHHHHHh--CCCCCcE
Confidence            367899999774 7888889988643699999987666666667776532  3322   1222   12221  1236998


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ++-.-..+              ..++...+.|+++|++.+.
T Consensus       271 vid~~g~~--------------~~~~~~~~~l~~~G~iv~~  297 (380)
T 1vj0_A          271 ILEATGDS--------------RALLEGSELLRRGGFYSVA  297 (380)
T ss_dssp             EEECSSCT--------------THHHHHHHHEEEEEEEEEC
T ss_pred             EEECCCCH--------------HHHHHHHHHHhcCCEEEEE
Confidence            87542222              4567888999999998764

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=88.28  E-value=0.93  Score=43.72  Aligned_cols=95  Identities=16%  Similarity=0.089  Sum_probs=61.1

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhh---hhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST---FRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l---~~~~~~~~~~s~D~v~~~  306 (416)
                      +..||-+|+|. |..++.+|+.....+++++|.+..-++.+++.|.+.+  +..+-.++   +.+..  ....+|.++-.
T Consensus       168 g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~--~~~~~~~~~~~v~~~~--~g~g~D~vid~  243 (348)
T 2d8a_A          168 GKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYV--INPFEEDVVKEVMDIT--DGNGVDVFLEF  243 (348)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEE--ECTTTSCHHHHHHHHT--TTSCEEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEE--ECCCCcCHHHHHHHHc--CCCCCCEEEEC
Confidence            67899999974 7888888887643389999986655566666665432  22211121   11111  12368988754


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      -..              +..++...+.|+++|++.+.
T Consensus       244 ~g~--------------~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          244 SGA--------------PKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             SCC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence            221              25678889999999998764

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=87.94  E-value=0.91  Score=44.38  Aligned_cols=97  Identities=13%  Similarity=0.107  Sum_probs=62.7

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEE---cChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~---~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..||=+|+|. |..++.+|+.....+++++|.+..-++.+++.|.+.+--..   .|..+.+.+.   .++.+|.++-
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~---~~gg~D~vid  269 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDL---TDGGVDYSFE  269 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHH---TTSCBSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHh---cCCCCCEEEE
Confidence            367788899975 88888999876444899999766556666666765321111   1222222222   2347998875


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCC-cEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~Lkpg-G~l~l~  343 (416)
                      ....              +..++...+.|++| |++.+.
T Consensus       270 ~~g~--------------~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          270 CIGN--------------VSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             CSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCC--------------HHHHHHHHHHhhccCCEEEEE
Confidence            4221              36788899999997 998774

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=87.04  E-value=2.6  Score=40.79  Aligned_cols=94  Identities=16%  Similarity=0.082  Sum_probs=62.5

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhh---hhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST---FRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l---~~~~~~~~~~s~D~v~~  305 (416)
                      .+..||=+|+|. |..++.+|+.. +++++++|.+..-++.+++.|.+.+  +..+..++   +.+..  ....+|.++-
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v--i~~~~~~~~~~v~~~~--~g~g~D~vid  263 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFALGADHG--INRLEEDWVERVYALT--GDRGADHILE  263 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTCSEE--EETTTSCHHHHHHHHH--TTCCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHcCCCEE--EcCCcccHHHHHHHHh--CCCCceEEEE
Confidence            368899999886 88888888876 5699999987655666667776533  22221222   12222  2346998876


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ... +              ..++...+.|+|+|++.+.
T Consensus       264 ~~g-~--------------~~~~~~~~~l~~~G~iv~~  286 (363)
T 3uog_A          264 IAG-G--------------AGLGQSLKAVAPDGRISVI  286 (363)
T ss_dssp             ETT-S--------------SCHHHHHHHEEEEEEEEEE
T ss_pred             CCC-h--------------HHHHHHHHHhhcCCEEEEE
Confidence            533 1              2356778899999998875

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=86.84  E-value=0.88  Score=39.85  Aligned_cols=95  Identities=11%  Similarity=0.034  Sum_probs=58.6

Q ss_pred             CCCeEEEEec--cccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhh---hhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST---FRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGC--G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l---~~~~~~~~~~s~D~v~  304 (416)
                      .+..||.+|+  |.|..+..+++.. +.+++++|......+.+++.+...+  +..+-.+.   +.+..  ....+|.++
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~~--~d~~~~~~~~~~~~~~--~~~~~D~vi  112 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYV--GDSRSVDFADEILELT--DGYGVDVVL  112 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEE--EETTCSTHHHHHHHHT--TTCCEEEEE
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEE--eeCCcHHHHHHHHHHh--CCCCCeEEE
Confidence            3688999994  6677888877764 5789999976555555544454321  22111111   11111  234699887


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      -+- -+              ..++...+.|+|+|++.+..
T Consensus       113 ~~~-g~--------------~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          113 NSL-AG--------------EAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             ECC-CT--------------HHHHHHHHTEEEEEEEEECS
T ss_pred             ECC-ch--------------HHHHHHHHHhccCCEEEEEc
Confidence            542 11              45778889999999988753

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=86.32  E-value=1.6  Score=41.92  Aligned_cols=98  Identities=12%  Similarity=0.159  Sum_probs=60.9

Q ss_pred             CCCeEEEEecc--ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCC-CceeEEEEE
Q 014919          230 AQPLVVDIGSG--NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP-GKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG--~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~-~s~D~v~~~  306 (416)
                      .+..+|-+|+|  .|..+..+|+...+++++++|.+...++.+++.+.+.+ +-..+ .+.......... +.+|.++-+
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~d~vi~~  247 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYV-INASM-QDPLAEIRRITESKGVDAVIDL  247 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEE-EETTT-SCHHHHHHHHTTTSCEEEEEES
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEE-ecCCC-ccHHHHHHHHhcCCCceEEEEC
Confidence            46889999998  67778888887646789999976655555555564422 21112 111111101112 579988654


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      -..              +..++...+.|+++|++.+.
T Consensus       248 ~g~--------------~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          248 NNS--------------EKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             CCC--------------HHHHTTGGGGEEEEEEEEEC
T ss_pred             CCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence            211              24677888999999998764

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=85.56  E-value=3.3  Score=39.53  Aligned_cols=98  Identities=12%  Similarity=0.024  Sum_probs=61.6

Q ss_pred             CCCeEEEEecccc-HHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcE-EEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNG-LFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G-~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv-~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+..||=+|+|.+ .++..+|++.-..+++++|.+..-++.+++.+.+.+ ..-..|..+-+.+..  ....+|.++..-
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t--~g~g~d~~~~~~  240 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKIT--GGLGVQSAIVCA  240 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHT--TSSCEEEEEECC
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhc--CCCCceEEEEec
Confidence            3678888999874 556667777778899999987665666666676532 222233322222222  233566665431


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .              .+..+....+.|+++|++.+.
T Consensus       241 ~--------------~~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          241 V--------------ARIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             S--------------CHHHHHHHHHTEEEEEEEEEC
T ss_pred             c--------------CcchhheeheeecCCceEEEE
Confidence            1              136678888999999998764

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=85.16  E-value=2.4  Score=40.35  Aligned_cols=94  Identities=12%  Similarity=0.079  Sum_probs=59.3

Q ss_pred             CCCeEEEEec--cccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc---ChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGC--G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~---Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..+|-.||  |.|..+..+++.. +++++++|.....++.+++.+...+ +-..   +..+.+.+.   ..+.+|.++
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~---~~~~~d~vi  219 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGFDAA-FNYKTVNSLEEALKKA---SPDGYDCYF  219 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEE-EETTSCSCHHHHHHHH---CTTCEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCCcEE-EecCCHHHHHHHHHHH---hCCCCeEEE
Confidence            3689999998  6788888888775 5699999976555555555554321 2111   121221221   135789886


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      -+-.               ...++...+.|+++|++.+.
T Consensus       220 ~~~g---------------~~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          220 DNVG---------------GEFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             ESSC---------------HHHHHHHHTTEEEEEEEEEC
T ss_pred             ECCC---------------hHHHHHHHHHHhcCCEEEEE
Confidence            5421               13467888999999998764

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=84.69  E-value=2.3  Score=41.44  Aligned_cols=93  Identities=14%  Similarity=0.196  Sum_probs=59.9

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+..||-+|+|. |..++.+|+.. +++++++|.+..-++.+++.|.+.+  +..+-.+.... +   .+.+|.++-.-.
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~lGa~~v--i~~~~~~~~~~-~---~~g~Dvvid~~g  266 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEV--VNSRNADEMAA-H---LKSFDFILNTVA  266 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEE--EETTCHHHHHT-T---TTCEEEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEE--eccccHHHHHH-h---hcCCCEEEECCC
Confidence            367899999985 88888999876 5689999976554555556675432  22221222121 1   246898865432


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .+              ..++...+.|+++|++.+.
T Consensus       267 ~~--------------~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          267 AP--------------HNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             SC--------------CCHHHHHTTEEEEEEEEEC
T ss_pred             CH--------------HHHHHHHHHhccCCEEEEe
Confidence            22              2356778899999998764

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=84.47  E-value=6.9  Score=37.79  Aligned_cols=122  Identities=16%  Similarity=0.193  Sum_probs=72.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHh-------C--------------CCcEEEEEcChh
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLS-------G--------------ITNGYFIATNAT  286 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~-------~--------------l~nv~f~~~Da~  286 (416)
                      ...|+.+|||.......|...+|+..|+-||.   ++.-.+.+.+.       +              .++.+++-+|+.
T Consensus        98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL~  177 (334)
T 1rjd_A           98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN  177 (334)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred             CcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCCC
Confidence            57899999999999999998888999999994   22111222221       1              267999999998


Q ss_pred             hh--hhhhhcc--CCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEE-EEe--C---cHHHHHHHHHH
Q 014919          287 ST--FRSIVAS--YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF-LQS--D---IEEVMLRMKQQ  356 (416)
Q Consensus       287 ~l--~~~~~~~--~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~-l~t--D---~~~~~~~~~~~  356 (416)
                      +.  +...+..  .+.....+.+-..-.+.....      ...+++.+.+.+ |+|.++ +..  .   ...+...|...
T Consensus       178 d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~------~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~~~  250 (334)
T 1rjd_A          178 DITETTRLLDVCTKREIPTIVISECLLCYMHNNE------SQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQSN  250 (334)
T ss_dssp             CHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHH------HHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHHH
T ss_pred             CcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHH------HHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHHHH
Confidence            74  1111110  123334444444444432221      237777787776 777664 321  1   22455567666


Q ss_pred             HHh
Q 014919          357 FLE  359 (416)
Q Consensus       357 ~~~  359 (416)
                      +.+
T Consensus       251 l~~  253 (334)
T 1rjd_A          251 LKE  253 (334)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            655

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=84.45  E-value=1.7  Score=41.87  Aligned_cols=94  Identities=19%  Similarity=0.176  Sum_probs=60.0

Q ss_pred             CCCeEEEEec--cccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEE-c---ChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIA-T---NATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGC--G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~-~---Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+..+|-+|+  |.|..+..+|+.. +.+++++|.+....+.+++.+.+.  .+. .   +..+.+.+..   .+.+|.+
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~g~~~--~~d~~~~~~~~~~~~~~~---~~~~D~v  242 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSIGGEV--FIDFTKEKDIVGAVLKAT---DGGAHGV  242 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHTTCCE--EEETTTCSCHHHHHHHHH---TSCEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHcCCce--EEecCccHhHHHHHHHHh---CCCCCEE
Confidence            4689999999  6788888888875 569999996544444455555432  222 1   2222222222   2368988


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +-+...              ...++...+.|+++|++.+.
T Consensus       243 i~~~g~--------------~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          243 INVSVS--------------EAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             EECSSC--------------HHHHHHHTTSEEEEEEEEEC
T ss_pred             EECCCc--------------HHHHHHHHHHHhcCCEEEEE
Confidence            755221              25678889999999998764

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=82.04  E-value=3.9  Score=39.02  Aligned_cols=98  Identities=13%  Similarity=0.070  Sum_probs=61.9

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEE-EEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~-f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+..||=+|+|. |.+++.+|+..-...++++|.+..-++.+++.|.+.+- .-..|..+.....-  ....+|.++-..
T Consensus       160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~--~~~g~d~v~d~~  237 (346)
T 4a2c_A          160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLR--ELRFNQLILETA  237 (346)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHG--GGCSSEEEEECS
T ss_pred             CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhc--ccCCcccccccc
Confidence            467888899975 55677788887666789999877666777777765321 11122222211111  124467665431


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .              .+..++...+.|+++|++.+.
T Consensus       238 G--------------~~~~~~~~~~~l~~~G~~v~~  259 (346)
T 4a2c_A          238 G--------------VPQTVELAVEIAGPHAQLALV  259 (346)
T ss_dssp             C--------------SHHHHHHHHHHCCTTCEEEEC
T ss_pred             c--------------ccchhhhhhheecCCeEEEEE
Confidence            1              136788889999999998874

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=81.57  E-value=3.1  Score=39.90  Aligned_cols=94  Identities=12%  Similarity=0.051  Sum_probs=59.9

Q ss_pred             CCeEEEE-ecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          231 QPLVVDI-GSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       231 ~~~vLDI-GCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      +..||=+ |+| .|..++.+|+.. ++++++++....-++.+++.|.+.+--...|..+.+.+.   ....+|.++-...
T Consensus       151 g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~---~~~g~Dvv~d~~g  226 (346)
T 3fbg_A          151 GKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQ---GIELVDYVFCTFN  226 (346)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHH---TCCCEEEEEESSC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHh---CCCCccEEEECCC
Confidence            6788888 454 488888888875 569999998666566666677553311111222211211   2456998864311


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                                    .+..++...++|+++|++..
T Consensus       227 --------------~~~~~~~~~~~l~~~G~iv~  246 (346)
T 3fbg_A          227 --------------TDMYYDDMIQLVKPRGHIAT  246 (346)
T ss_dssp             --------------HHHHHHHHHHHEEEEEEEEE
T ss_pred             --------------chHHHHHHHHHhccCCEEEE
Confidence                          13567888999999999865

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=81.56  E-value=2.5  Score=40.46  Aligned_cols=94  Identities=10%  Similarity=0.022  Sum_probs=60.4

Q ss_pred             CCCeEEEEec--cccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhh---hhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST---FRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGC--G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l---~~~~~~~~~~s~D~v~  304 (416)
                      .+..+|-+|+  |.|..+..+|+.. +++++++|.+...++.+++.+.+.+  +..+-.++   +.+..  ....+|.++
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~ga~~~--~d~~~~~~~~~~~~~~--~~~~~d~vi  240 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKALGADET--VNYTHPDWPKEVRRLT--GGKGADKVV  240 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCSEE--EETTSTTHHHHHHHHT--TTTCEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCCCEE--EcCCcccHHHHHHHHh--CCCCceEEE
Confidence            3688999998  6788899999876 5699999976655555555665432  22211111   12222  124699886


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      -+-. +              ..++...+.|+++|++.+.
T Consensus       241 ~~~g-~--------------~~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          241 DHTG-A--------------LYFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             ESSC-S--------------SSHHHHHHHEEEEEEEEES
T ss_pred             ECCC-H--------------HHHHHHHHhhccCCEEEEE
Confidence            5432 1              2356778899999998764

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=81.40  E-value=2.8  Score=40.47  Aligned_cols=92  Identities=12%  Similarity=0.039  Sum_probs=57.9

Q ss_pred             CeEEEEeccc-cHHH-HHHH-HhCCCCe-EEEEchHHH---HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          232 PLVVDIGSGN-GLFL-LGMA-RKRKDLN-FLGLELVTH---CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       232 ~~vLDIGCG~-G~~~-~~lA-~~~p~~~-~iGvD~~~~---a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ..||=+|+|. |.++ +.+| +.. +++ ++++|.+..   -++.+++.|.+.+.....|..+ +.+.    .+.+|.++
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~----~gg~Dvvi  247 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVED-VPDV----YEQMDFIY  247 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGG-HHHH----SCCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHH-HHHh----CCCCCEEE
Confidence            7899999864 7777 8888 765 455 999997654   4555666675433000112222 1211    23689886


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      -....              +..++...+.|+++|++.+.
T Consensus       248 d~~g~--------------~~~~~~~~~~l~~~G~iv~~  272 (357)
T 2b5w_A          248 EATGF--------------PKHAIQSVQALAPNGVGALL  272 (357)
T ss_dssp             ECSCC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             ECCCC--------------hHHHHHHHHHHhcCCEEEEE
Confidence            43211              24678889999999998764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=81.21  E-value=11  Score=30.67  Aligned_cols=109  Identities=14%  Similarity=0.039  Sum_probs=62.5

Q ss_pred             CeEEEEeccccHHHHHHHHhC--CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          232 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~~--p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      ..++=+|||  .++..+|+..  .+.+++++|......+.+...+   +.++.+|+.+. ...-...-...|.+++..++
T Consensus         7 ~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~---~~~~~gd~~~~-~~l~~~~~~~~d~vi~~~~~   80 (141)
T 3llv_A            7 YEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEG---FDAVIADPTDE-SFYRSLDLEGVSAVLITGSD   80 (141)
T ss_dssp             CSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTT---CEEEECCTTCH-HHHHHSCCTTCSEEEECCSC
T ss_pred             CEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC---CcEEECCCCCH-HHHHhCCcccCCEEEEecCC
Confidence            567888885  4666555532  3678999998665555554433   57788988763 11111123468888876442


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCC
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK  362 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~  362 (416)
                      .      .    . ...+....+.+. ...++.......+.+    .+++.|.
T Consensus        81 ~------~----~-n~~~~~~a~~~~-~~~iia~~~~~~~~~----~l~~~G~  117 (141)
T 3llv_A           81 D------E----F-NLKILKALRSVS-DVYAIVRVSSPKKKE----EFEEAGA  117 (141)
T ss_dssp             H------H----H-HHHHHHHHHHHC-CCCEEEEESCGGGHH----HHHHTTC
T ss_pred             H------H----H-HHHHHHHHHHhC-CceEEEEEcChhHHH----HHHHcCC
Confidence            2      1    1 133445555666 666666665555433    3455554

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=81.10  E-value=5.4  Score=38.11  Aligned_cols=96  Identities=11%  Similarity=0.123  Sum_probs=60.3

Q ss_pred             CCCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+..||-+|+| .|..++.+|+.. +++++++|.+..-++.+++.|.+.+  +..+-.++........ +.+|.++-...
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~--~d~~~~~~~~~~~~~~-~~~d~vid~~g  239 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELGADLV--VNPLKEDAAKFMKEKV-GGVHAAVVTAV  239 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCSEE--ECTTTSCHHHHHHHHH-SSEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHCCCCEE--ecCCCccHHHHHHHHh-CCCCEEEECCC
Confidence            36789999996 488888888876 5699999976655566666665422  2111111111110001 46898865421


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .              +..++...+.|+++|++.+.
T Consensus       240 ~--------------~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          240 S--------------KPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             C--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             C--------------HHHHHHHHHHhhcCCEEEEe
Confidence            1              25678888999999998764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=80.86  E-value=3.4  Score=40.67  Aligned_cols=97  Identities=14%  Similarity=0.084  Sum_probs=59.9

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc---ChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~---Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..||=+|+|. |..++.+|+.....+++++|.+..-++.+++.|.+.+  +..   |..+.+.+..  ....+|.++-
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~v--i~~~~~~~~~~i~~~t--~g~g~D~vid  288 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHV--IDPTKENFVEAVLDYT--NGLGAKLFLE  288 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEE--ECTTTSCHHHHHHHHT--TTCCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEE--EcCCCCCHHHHHHHHh--CCCCCCEEEE
Confidence            367788899876 7888889988744499999987766666677775532  222   2222112222  2336898875


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhc----cCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLL----VHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~L----kpgG~l~l~  343 (416)
                      .-..+             ...+..+.+.|    +++|++.+.
T Consensus       289 ~~g~~-------------~~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          289 ATGVP-------------QLVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             CSSCH-------------HHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             CCCCc-------------HHHHHHHHHHHHhccCCCcEEEEe
Confidence            42211             12445555556    999998874

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=80.77  E-value=3  Score=39.65  Aligned_cols=77  Identities=13%  Similarity=0.057  Sum_probs=54.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCe-EEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLN-FLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~-~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      ...+++|+=||.|.+...+.+..-+.. +.++|+...|.+..+.+ .++..++.+|+.++....++ ..+.+|+++..+|
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N-~~~~~~~~~DI~~i~~~~i~-~~~~~Dll~ggpP   92 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR-HQGKIMYVGDVRSVTQKHIQ-EWGPFDLVIGGSP   92 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHH-TTTCEEEECCGGGCCHHHHH-HTCCCSEEEECCC
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHh-CCCCceeCCChHHccHHHhc-ccCCcCEEEecCC
Confidence            356899999999999998887632333 58999988777655443 34556788999887433332 1246899988764

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=80.53  E-value=4.9  Score=38.17  Aligned_cols=96  Identities=14%  Similarity=0.115  Sum_probs=61.2

Q ss_pred             CCCeEEEEec--cccHHHHHHHHhCCCCeEEEEchHHHHHHHH-HHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSL-QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGC--G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a-~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+..||-+||  |.|..+..+|+.. +++++++|.+...++.+ ++.+.+.+  +..+-.++.........+.+|.++-+
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~d~vi~~  225 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEELGFDGA--IDYKNEDLAAGLKRECPKGIDVFFDN  225 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCCSEE--EETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCCEE--EECCCHHHHHHHHHhcCCCceEEEEC
Confidence            4689999998  6788888888875 56999999766555555 55565422  22211222111111123568987643


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      -.               ...++...+.|+++|++.+.
T Consensus       226 ~g---------------~~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          226 VG---------------GEILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             SC---------------HHHHHHHHTTEEEEEEEEEC
T ss_pred             CC---------------cchHHHHHHHHhhCCEEEEE
Confidence            11               14678888999999998874

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=80.40  E-value=3.1  Score=39.95  Aligned_cols=94  Identities=13%  Similarity=0.140  Sum_probs=59.9

Q ss_pred             CCCeEEEEec--cccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcC--hhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATN--ATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGC--G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~D--a~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..||=+|+  |.|..+..+|+.. ++++++++....-++.+++.|.+.+  +..+  ..+.+.+..  ....+|.++-
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~v--~~~~~~~~~~v~~~~--~~~g~Dvvid  233 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSVGADIV--LPLEEGWAKAVREAT--GGAGVDMVVD  233 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEE--EESSTTHHHHHHHHT--TTSCEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEE--ecCchhHHHHHHHHh--CCCCceEEEE
Confidence            4688999997  6688899999876 5699999975544455556665533  2222  222112222  2336998865


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .-..               ..++...+.|+++|++.+.
T Consensus       234 ~~g~---------------~~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          234 PIGG---------------PAFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             SCC-----------------CHHHHHHTEEEEEEEEEC
T ss_pred             CCch---------------hHHHHHHHhhcCCCEEEEE
Confidence            4221               2356778899999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	416
d1phpa_	394	c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus st	1e-25
d1vpea_	398	c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga	3e-23
d1ltka_	417	c.86.1.1 (A:) Phosphoglycerate kinase {Malaria par	6e-22
d16pka_	415	c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma	2e-21
d1qpga_	415	c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yea	2e-20
d1v6sa_	390	c.86.1.1 (A:) Phosphoglycerate kinase {Thermus the	3e-19
d1hdia_	413	c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus sc	1e-16
d2fcaa1	204	c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr	2e-15
d1yzha1	204	c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra	6e-13

>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 394

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  105 bits (262), Expect = 1e-25
 Identities = 54/210 (25%), Positives = 100/210 (47%), Gaps = 5/210 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           ++P+ AIIGG  + +K   +  L  + D LI  G +++  + ALG  V   L+E+   + 
Sbjct: 186 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIEL 245

Query: 66  ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
           A   ++ A++K +    P D     +  +    ++ P   IP  W  +DIGP++ E    
Sbjct: 246 AKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRD 305

Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
            I + K V+W GP+       +++G      +   +++     +VIG     A  +    
Sbjct: 306 VIRESKLVVWNGPMGVFEMDAFAHGTKA---IAEALAEALDTYSVIGGGDSAAAVEKFGL 362

Query: 185 IFGLNMVES-GSAVWEFLKGRMLPGVSALD 213
              ++ + + G A  EF++G+ LPGV AL+
Sbjct: 363 ADKMDHISTGGGASLEFMEGKQLPGVVALE 392

>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]} Length = 398

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermotoga maritima [TaxId: 2336]

 Score = 98.6 bits (245), Expect = 3e-23
 Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 4/210 (1%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
           EKPY  ++GG  + +K   +  L  + D ++  G M F  + ALG  V    VE+   D 
Sbjct: 185 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 244

Query: 66  ASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
           A +L++ A++K + I+ P D    +       +  +    GIP+GW  +DIGP ++E   
Sbjct: 245 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 304

Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
             ++  K V+W GP+       ++ G  ++   +  +++    +TV+G     A      
Sbjct: 305 QKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGA-ITVVGGGDSAAAVNKFG 363

Query: 184 SIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
                + V + G A  EFL+G+ LPG++++
Sbjct: 364 LEDKFSHVSTGGGASLEFLEGKELPGIASM 393

>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 417

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 94.8 bits (235), Expect = 6e-22
 Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 13/216 (6%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQ-IMHALGLPVPPELVEKGAND 64
           ++P  AI+GG  + +K   +  L  + D +I  G M++        + +   L ++  + 
Sbjct: 206 QRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSK 265

Query: 65  AASDLIQFARDKHITILYPKDFWCTK--IHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
              ++++ A+ K++ I  P DF       ++ N   +    GIPD W  +D GP+S+E  
Sbjct: 266 IVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENY 325

Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
              I   K VIW GP        ++ G+ +   ++ +V++      V G      + +  
Sbjct: 326 KDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQ-- 383

Query: 183 SSIFGLN-----MVESGSAVWEFLKGRMLPGVSALD 213
                       +   G A  E L+G+ LPGV AL 
Sbjct: 384 ---QNKKNEISHVSTGGGASLELLEGKELPGVLALS 416

>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]} Length = 415

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 93.7 bits (232), Expect = 2e-21
 Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 2/209 (0%)

Query: 7   KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
           +P  AI+GG  + +K   L  +  R D L+  G M++  + A G  +     E+   + A
Sbjct: 205 RPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFA 264

Query: 67  SDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
             L++ A D+ + ++ P D  C T+    +   I     IP+G   +DIGP+++E+   T
Sbjct: 265 RSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQT 324

Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSI 185
           I KCK  IW GP+       YS G   +   + + +     +++IG     + A++S   
Sbjct: 325 IGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEA 384

Query: 186 FGLNMVES-GSAVWEFLKGRMLPGVSALD 213
             ++ V + G A  E L+G+ LPGV+ LD
Sbjct: 385 KRMSHVSTGGGASLELLEGKTLPGVTVLD 413

>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 415

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.1 bits (223), Expect = 2e-20
 Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 5/212 (2%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQ-IMHALGLPVPPELVEKGAND 64
            +P+ AI+GG  + +K   +  L  + D +I  G M+F          +   + +K   +
Sbjct: 202 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAE 261

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIH--HPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
               L++ A+ K + ++ P DF          N   +    GIP GW+ +D GP S +  
Sbjct: 262 IVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLF 321

Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
            +T+ K K ++W GP       +++ G   L   + K S    N  +IG      +AK  
Sbjct: 322 AATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNTVIIGGGDTATVAKKY 380

Query: 183 SSIFGLNMV-ESGSAVWEFLKGRMLPGVSALD 213
                ++ V   G A  E L+G+ LPGV+ L 
Sbjct: 381 GVTDKISHVSTGGGASLELLEGKELPGVAFLS 412

>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]} Length = 390

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermus thermophilus [TaxId: 274]

 Score = 86.3 bits (213), Expect = 3e-19
 Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 5/213 (2%)

Query: 3   KLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGA 62
           K  E+PYA ++GG  + +K   +  L  R D L+  G M+F  + ALG  V   LVE+  
Sbjct: 180 KDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDR 239

Query: 63  NDAASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEE 121
            D A DL+  A    + +  P+D    +      +  +FP+  IP  +  +DIGP++ E 
Sbjct: 240 LDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREA 299

Query: 122 ITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
               +   + V W GP+       +  G      +   ++      TV+G     A    
Sbjct: 300 FARALEGARTVFWNGPMGVFEVPPFDEGTLA---VGQAIAALEGAFTVVGGGDSVAAVNR 356

Query: 182 SSSIFGLNMVES-GSAVWEFLKGRMLPGVSALD 213
                    V + G A  EFL+   LPG+  L+
Sbjct: 357 LGLKERFGHVSTGGGASLEFLEKGTLPGLEVLE 389

>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 78.6 bits (193), Expect = 1e-16
 Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 9/214 (4%)

Query: 6   EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
           E+P+ AI+GG  + +K   ++ +  + + +I  G M+F  +  L  + +   L ++    
Sbjct: 201 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKK 260

Query: 65  AASDLIQFARDKHITILYPKDFWCTKIH--HPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
              +L+  A    + I  P DF             +   + GIP GW  +D GP+S  + 
Sbjct: 261 IVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKY 320

Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIA 179
           +  + + K+++W GPV       ++ G   L   + K +   C +T+IG   +  C A  
Sbjct: 321 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGC-ITIIGGGDTATCCAKW 379

Query: 180 KVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD 213
               ++  ++    G A  E L+G++LPGV AL 
Sbjct: 380 NTEDNVSHVST--GGGASLELLEGKVLPGVDALS 411

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

 Score = 72.6 bits (177), Expect = 2e-15
 Identities = 34/205 (16%), Positives = 83/205 (40%), Gaps = 17/205 (8%)

Query: 211 ALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHC 266
           A+     +   W+  + +   P+ +++G+G G F+ GMA++  D+N++G+E    ++   
Sbjct: 11  AISNPADYKGKWNTVFGND-NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTA 69

Query: 267 RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSL 326
              ++ S   N   +  +A +         PG++  V +   +P   +   + R+     
Sbjct: 70  VQKVKDSEAQNVKLLNIDADTLTDVF---EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHF 126

Query: 327 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENS 386
           ++   +++   G +  ++D   +     + F EYG            T  +         
Sbjct: 127 LKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL---------LLTYVSLDLHNSNLE 177

Query: 387 FGVRSDWEQHVIDRGAPMYRLMLSK 411
             + +++E+     G P+YR  +  
Sbjct: 178 GNIMTEYEEKFSALGQPIYRAEVEW 202

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 65.3 bits (158), Expect = 6e-13
 Identities = 31/197 (15%), Positives = 78/197 (39%), Gaps = 11/197 (5%)

Query: 212 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ 271
           +         W   + +   P+ V++GSG G F+ GMA++  D+N++G+++         
Sbjct: 14  VLNPLEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL 72

Query: 272 LSGITNGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 330
              +  G             +   +  G++  + +   +P   +   + R+  ++ ++  
Sbjct: 73  DKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTF 132

Query: 331 SDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVR 390
             +L  +G++  ++D   +       F +YG     +  D             +    V 
Sbjct: 133 KRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDL---------HASDFEGNVM 183

Query: 391 SDWEQHVIDRGAPMYRL 407
           +++EQ   ++G  +YR+
Sbjct: 184 TEYEQKFSNKGQVIYRV 200

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	416
d1phpa_	394	Phosphoglycerate kinase {Bacillus stearothermophil	100.0
d1v6sa_	390	Phosphoglycerate kinase {Thermus thermophilus [Tax	100.0
d16pka_	415	Phosphoglycerate kinase {Trypanosoma brucei [TaxId	100.0
d1vpea_	398	Phosphoglycerate kinase {Thermotoga maritima [TaxI	100.0
d1ltka_	417	Phosphoglycerate kinase {Malaria parasite (Plasmod	100.0
d1qpga_	415	Phosphoglycerate kinase {Baker's yeast (Saccharomy	100.0
d1hdia_	413	Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId:	100.0
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	100.0
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	100.0
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.59
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.57
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.53
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.52
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.51
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.47
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.47
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.46
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.45
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.44
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.44
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.44
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.43
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.39
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.38
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.38
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.37
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.36
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.35
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.35
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.34
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.33
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.33
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.33
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.31
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.31
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.31
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.3
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.3
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.29
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.29
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.23
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.23
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.23
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.22
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.18
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.15
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.14
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.09
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.04
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.02
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.01
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.0
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.98
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.96
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.94
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.91
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.9
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.89
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.89
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.88
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.86
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.83
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.81
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.8
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.79
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.76
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.76
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.75
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.71
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.7
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.68
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.68
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.68
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.66
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.63
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.61
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.53
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.52
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.5
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.49
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.35
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.34
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.32
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.32
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.31
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.3
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.3
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.24
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.08
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.03
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.0
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.93
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.91
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.9
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.86
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.76
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.67
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.67
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.6
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.53
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.48
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.47
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.19
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.05
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	96.86
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.76
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.54
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.48
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	95.45
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.22
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.95
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.53
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	94.41
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.28
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.14
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.03
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.53
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	93.03
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.31
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.13
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	91.64
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	90.85
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	90.67
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	90.52
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	88.47
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	87.14
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	86.01
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	85.1
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	85.03
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	84.63
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	84.56
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	83.42
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	81.76
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	80.95
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	80.2

>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=4.1e-58  Score=458.21  Aligned_cols=208  Identities=26%  Similarity=0.494  Sum_probs=193.2

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (416)
                      +++|+||++||+|||||||||++|++|+++||+|++||+||||||+|+|++||+|++|++.++.|+++++.+++++++|+
T Consensus       182 l~~p~rP~~aIiGGaKisdKi~~i~~l~~k~D~i~igG~mantfl~a~G~~iG~sl~e~~~~~~a~~i~~~~~~~~~~i~  261 (394)
T d1phpa_         182 LSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIELAKSFMEKAKEKGVRFY  261 (394)
T ss_dssp             HHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCCGGGHHHHHHHHHHHHHHTCEEE
T ss_pred             HhCCCCCeEEEEecCccccHHHHHHHHHhhcCeEEEcchHHHHHHHHcCCccCcccccchhHHHHHHHHHHHhhcCCccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (416)
Q Consensus        82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (416)
                      ||+|++|+.+. ...+..++++++||++|+++||||+|++.|+++|..|+||+||||||+||.++|+.||.+|+++++++
T Consensus       262 lP~D~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmG~fE~~~F~~GT~~l~~~ia~~  341 (394)
T d1phpa_         262 MPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEA  341 (394)
T ss_dssp             CCSEEEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHC
T ss_pred             CCccchhhccccccccceEEEhhhccCCccccccCchHHHHHHHHHhhhceEEEecceeeeeccchhHHHHHHHHHHHhc
Confidence            99999999875 34456677899999999999999999999999999999999999999999999999999999999875


Q ss_pred             hcCCCCeEEEcchhHH---HHhcccCCccceeeecCCceEeeeecccCCCCcccccc
Q 014919          161 SQGTCNVTVIGSMACK---AIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (416)
Q Consensus       161 ~~~~~~~~v~gg~~~~---~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~  214 (416)
                      ++   ++||+|||+++   ..+++.++++|+||  ||||+|+||+|+.+|++++|.+
T Consensus       342 ~~---a~sivGGGdT~aai~~~g~~~~~shvST--GGGA~Le~L~G~~LPgi~aL~~  393 (394)
T d1phpa_         342 LD---TYSVIGGGDSAAAVEKFGLADKMDHIST--GGGASLEFMEGKQLPGVVALED  393 (394)
T ss_dssp             TT---CEEEECSHHHHHHHHHTTCGGGSSEECS--CTHHHHHHHTTCCCHHHHTSCB
T ss_pred             CC---CeEEEeCHHHHHHHHHcCCcCCCcEEec--CHHHHHHHHCCCCCchHHHhhc
Confidence            42   48999998633   46677788999999  8999999999999999999865

>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.4e-57  Score=452.09  Aligned_cols=207  Identities=27%  Similarity=0.455  Sum_probs=191.5

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (416)
                      +++|+||++||+|||||||||++|++|+++||+|++||+||||||+|+|++||+|++|++.++.++++++.+++++++|+
T Consensus       179 l~~~~rP~vaIlGGaKvsdKi~~i~~l~~k~D~iiigG~mAntFL~a~G~~IG~sl~e~~~~~~~~~~~~~a~~~~~~i~  258 (390)
T d1v6sa_         179 LKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDLAKDLLGRAEALGVRVY  258 (390)
T ss_dssp             TSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGGGHHHHHHHHHHHHHHTCEEE
T ss_pred             HhhccCceEEEEecccccchHHHHHHHHHhcceeeecccHHHHHHHHcCCccCcchhhhhhhhhhHhHHHhhhhhccccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919           82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (416)
Q Consensus        82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (416)
                      +|+|++|+.+. .+....++++++||++|+++||||+|+++|+++|..|+||+||||||+||.++|+.||++|+++++..
T Consensus       259 lp~dv~~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmGvfE~~~F~~GT~~i~~aia~~  338 (390)
T d1v6sa_         259 LPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAAL  338 (390)
T ss_dssp             CCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSCTTSTTTTHHHHHHHHHHHTC
T ss_pred             cccceeecccccCCccccccchhhhhhhhhhhhhhhhhhHHHHHHhcccceEEEEccccccccCchhHHHHHHHHHHHhc
Confidence            99999999875 34455677899999999999999999999999999999999999999999999999999999999753


Q ss_pred             hcCCCCeEEEcchhHH---HHhcccCCccceeeecCCceEeeeecccCCCCccccc
Q 014919          161 SQGTCNVTVIGSMACK---AIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD  213 (416)
Q Consensus       161 ~~~~~~~~v~gg~~~~---~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~  213 (416)
                         .+++||+|||+++   ..+++.++++|+||  ||||+|+||+|+.+|++++|.
T Consensus       339 ---~~a~sIiGGGdT~aai~~~g~~~~fshVST--GGGA~Le~L~G~~LPgi~aL~  389 (390)
T d1v6sa_         339 ---EGAFTVVGGGDSVAAVNRLGLKERFGHVST--GGGASLEFLEKGTLPGLEVLE  389 (390)
T ss_dssp             ---SSCEEEEESHHHHHHHHTTTCGGGSSEECC--SSSHHHHHHHHSCCHHHHTTC
T ss_pred             ---CCCEEEEeCHHHHHHHHHcCCcCCCcEEeC--CHHHHHHHHCCCCccchhhhc
Confidence               2258999988644   45677778999999  899999999999999999885

>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Trypanosoma brucei [TaxId: 5691]

Probab=100.00  E-value=2.1e-57  Score=456.75  Aligned_cols=211  Identities=27%  Similarity=0.482  Sum_probs=194.7

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (416)
                      +++|+||++||||||||||||++|+||+++||+|++||+||||||+|+|++||+|++|++.++.|+++++.+++++++|+
T Consensus       200 l~~p~~P~~aIlGGaKisdKi~~i~~l~~k~D~iligG~~antfL~a~G~~iG~sl~e~~~~~~a~~i~~~~~~~~~~i~  279 (415)
T d16pka_         200 LGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVI  279 (415)
T ss_dssp             HSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTHHHHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred             HhCCCcceEEEEeccccccHHHHHHHHHhhcceeeecchHHHHHHHHcCCcccccchhhhhhhhhhhhhhhhhcceeEEe
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCCC-CCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919           82 YPKDFWCTKIHH-PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV  160 (416)
Q Consensus        82 lP~D~~v~~~~~-~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~  160 (416)
                      ||+|++|+.++. .....+.++++||++|+++||||.|+++|+++|..|+||+||||||+||.++|+.||.+|+++++++
T Consensus       280 lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~I~~AktI~wNGP~GvfE~~~F~~GT~~l~~~ia~~  359 (415)
T d16pka_         280 LPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRG  359 (415)
T ss_dssp             CCSSEEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHH
T ss_pred             eccceeeccccccccccccccccccccchHHHHHHHHhhhHHhHhhhhhceEEEecceeeeeccchhHHHHHHHHHHHHh
Confidence            999999998752 3344566788999999999999999999999999999999999999999999999999999999987


Q ss_pred             hcCCCCeEEEcchhH---HHHhcccCCccceeeecCCceEeeeecccCCCCcccccc
Q 014919          161 SQGTCNVTVIGSMAC---KAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (416)
Q Consensus       161 ~~~~~~~~v~gg~~~---~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~  214 (416)
                      +.++.++||+|||++   +..+++.++++|+||  ||||+|+||+|+.+|++++|.+
T Consensus       360 t~~~~~~sivGGGdT~aai~~~g~~~~~~hvST--GGGA~L~~L~G~~LPgi~aL~~  414 (415)
T d16pka_         360 THEHGLMSIIGGGDSASAAELSGEAKRMSHVST--GGGASLELLEGKTLPGVTVLDD  414 (415)
T ss_dssp             HHHHCCEEEECSHHHHHHHHHTTCTTTSSEECS--CHHHHHHHHTTCCCHHHHTSCB
T ss_pred             hccCCCEEEECCHHHHHHHHHcCCccCCcEEEC--CHHHHHHHHCCCCcchHHHhhc
Confidence            644446999999863   346788888999999  8999999999999999999865

>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.7e-57  Score=450.44  Aligned_cols=211  Identities=26%  Similarity=0.496  Sum_probs=192.7

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL   81 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~   81 (416)
                      +++|+||+++|+||||+||||++|++|+++||+|++||+||||||+|+|++||+|++|++.++.++++++++++++++|+
T Consensus       181 l~~~~~P~~aIlGGaKisdKi~~i~~L~~k~D~iiigG~~antfL~a~G~~iG~sl~e~~~~~~~~~i~~~a~~~~~~i~  260 (398)
T d1vpea_         181 TYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDLAKELVEKAKEKGVEIV  260 (398)
T ss_dssp             HHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred             hhcccCceEEEeecCccccHHHHHHHHHHhcceeeecchHHHHHHHHcCCCCCCCccchhhhHHHHHHHHHhhhcCCccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CCCceeeecC-CCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHh
Q 014919           82 YPKDFWCTKIH-HPNQVEIFPS-HGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCK  159 (416)
Q Consensus        82 lP~D~~v~~~~-~~~~~~~~~~-~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~  159 (416)
                      ||+|++|+.+. ...+.....+ +.||++++++||||+|+++|+++|..|+||+||||||+||.++|+.||.+|++++++
T Consensus       261 lP~d~~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGP~G~fE~~~F~~GT~~l~~~ia~  340 (398)
T d1vpea_         261 LPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAA  340 (398)
T ss_dssp             CCSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHH
T ss_pred             cchheeecccccccccceeeccccCCCCcceeeccccchHHHHHHHhccCcEEEEEcccccccccchhHHHHHHHHHHHH
Confidence            99999999875 2233334344 569999999999999999999999999999999999999999999999999999998


Q ss_pred             hhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCccccccc
Q 014919          160 VSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA  215 (416)
Q Consensus       160 ~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~~  215 (416)
                      ++++++ +||+|||+   ++..+|+.+.++|+||  ||||+|+||+|+.+|++++|..+
T Consensus       341 ~t~~~~-~sIiGGGdT~aai~~~g~~~~f~hvST--GGGA~Le~L~G~~LPgi~aL~~~  396 (398)
T d1vpea_         341 LTEKGA-ITVVGGGDSAAAVNKFGLEDKFSHVST--GGGASLEFLEGKELPGIASMRIK  396 (398)
T ss_dssp             HHHTTC-EEEEESHHHHHHHHHTTCGGGSSEEES--CHHHHHHHHTSSCCHHHHTSCBC
T ss_pred             HhcCCC-EEEEeCHHHHHHHHHcCCcCCceEEeC--CHHHHHHHHCCCCChHHHHHhhc
Confidence            877665 89998886   3346678778999999  89999999999999999999764

>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.7e-56  Score=449.89  Aligned_cols=209  Identities=25%  Similarity=0.465  Sum_probs=192.0

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHH-HcCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMH-ALGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~-a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (416)
                      +++|+||++||+|||||||||++|++|+++||+|++||+||||||+ |+|++||+|++|++.++.|++++++|++++++|
T Consensus       202 l~~~~kP~vaIlGGaKvsdKi~vi~~L~~k~D~iiigG~mantfL~~a~g~~ig~sl~e~~~~~~~~~i~~~a~~~~~~i  281 (417)
T d1ltka_         202 LENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQI  281 (417)
T ss_dssp             HTSCCSSEEEEEECSCSGGGHHHHHHHHTTCSEEEEESSHHHHHHHHHHCCCCTTSCCCTTGGGTHHHHHHHHHHTTCEE
T ss_pred             HhccccCceEEEecCCccchHHHHHHHHhhhceeeeehhhHHHHHHhccCCccCcccchhhHHHHHHHHHHHHHhcCCce
Confidence            5789999999999999999999999999999999999999999998 689999999999999999999999999999999


Q ss_pred             ecceeEEEecCCC-C-CceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHH
Q 014919           81 LYPKDFWCTKIHH-P-NQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (416)
Q Consensus        81 ~lP~D~~v~~~~~-~-~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (416)
                      ++|+|++|+.+.. . ....+.+.++||++|+++||||+|++.|++.|..|+||+||||||+||.++|+.||.+|+++++
T Consensus       282 ~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~aktI~WNGP~GvfE~~~F~~GT~~l~~~i~  361 (417)
T d1ltka_         282 FLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVV  361 (417)
T ss_dssp             ECCSEEEEESSSSSSSCEEEEETTTCCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHH
T ss_pred             eeccceeeecccccCcccccccccccCCccceeeeccchhhhHHHHHhccCCEEEEECCcccccccchhHHHHHHHHHHH
Confidence            9999999998752 2 2333446788999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCccccc
Q 014919          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD  213 (416)
Q Consensus       159 ~~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~  213 (416)
                      +.+++++ +||+|||+   ++..+++.++++|+||  ||||+|+||+|+.+|++++|.
T Consensus       362 ~~t~~~~-~sivGGGdT~aai~~~g~~~~~~hvST--GGGA~Le~L~G~~LPgieaL~  416 (417)
T d1ltka_         362 EVTKKGA-ITIVGGGDTASLVEQQNKKNEISHVST--GGGASLELLEGKELPGVLALS  416 (417)
T ss_dssp             HHHHTTC-EEEECCSTTHHHHHHHTCGGGSSEECC--CSHHHHHHHTTCCCHHHHTSC
T ss_pred             HHhhCCC-EEEEeCHHHHHHHHhcCCccCCeEEEc--CHHHHHHHHCCCCCcceeccc
Confidence            9877664 89999876   4456788788999999  899999999999999999885

>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.6e-56  Score=444.95  Aligned_cols=211  Identities=26%  Similarity=0.465  Sum_probs=192.8

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHH-HcCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMH-ALGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~-a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (416)
                      +++|+||++||+|||||||||++|++|+++||+|++||+||||||+ ++|+++|+|++|++.++.|+++++.+++++++|
T Consensus       198 l~~p~rP~vaIlGGaKvsdKi~vl~~l~~k~D~iiigG~mantflk~~~g~~ig~s~~e~~~~~~~~~i~~~a~~~~~~i  277 (415)
T d1qpga_         198 LENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEV  277 (415)
T ss_dssp             HSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEE
T ss_pred             hcCCCCCeEEEEecCccccHHHHHHHHHhhcceEEeechhhHHHHHhccCCcccccccccccchhhhHHHHHHHhcCCeE
Confidence            5789999999999999999999999999999999999999999998 589999999999999999999999999999999


Q ss_pred             ecceeEEEecCCC--CCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHH
Q 014919           81 LYPKDFWCTKIHH--PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (416)
Q Consensus        81 ~lP~D~~v~~~~~--~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (416)
                      +||+|++|+.+..  .....+.+.++||++|+++||||+|+++|.++|..|+||+||||||+||.++|+.||.+|+++++
T Consensus       278 ~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~I~~a~tI~wNGP~GvfE~~~F~~GT~~i~~~ia  357 (415)
T d1qpga_         278 VLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVV  357 (415)
T ss_dssp             ECCSEEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHH
T ss_pred             eeeccEEEeeccccccccceeecccccCCcccccccchhhHHHHHHHhccCcEEEEECCcccccccchhhHHHHHHHHHH
Confidence            9999999987742  23344557889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCccccccc
Q 014919          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA  215 (416)
Q Consensus       159 ~~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~~  215 (416)
                      +++..+ .++|+|||+   ++..+|+.++++|+||  ||||+|+||+|+.+|++++|.+.
T Consensus       358 ~~~~~~-~~sivGGGdT~aai~~~g~~~~~~hvST--GGGA~L~~L~G~~LPgi~aL~~~  414 (415)
T d1qpga_         358 KSSAAG-NTVIIGGGDTATVAKKYGVTDKISHVST--GGGASLELLEGKELPGVAFLSEK  414 (415)
T ss_dssp             HHHHHT-CEEEECCHHHHHHHHHTTCGGGSSEECC--CTHHHHHHHTSCCCHHHHTSCBC
T ss_pred             HhccCC-CeEEEeCHHHHHHHHHcCCccCCceEeC--CHHHHHHHHCCCCCcHHHHHhhC
Confidence            976544 388999886   3456788888999999  89999999999999999999753

>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1e-55  Score=444.90  Aligned_cols=210  Identities=25%  Similarity=0.494  Sum_probs=191.8

Q ss_pred             CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHH-cCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014919            2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHA-LGLPVPPELVEKGANDAASDLIQFARDKHITI   80 (416)
Q Consensus         2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a-~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i   80 (416)
                      +++|+||++||+|||||||||++|+||+++||.|++||+||||||+| +|++||+|++|++.++.|+.+++.+++++++|
T Consensus       197 l~~p~~P~vaIlGGaKvsdKi~vi~~L~~k~d~iiigGgmantfL~a~~g~~iG~sl~e~~~~~~~~~~~~~~~~~~~~i  276 (413)
T d1hdia_         197 AESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKKIVKNLMSKAAANGVKI  276 (413)
T ss_dssp             HTSCCSSEEEEECCSCSGGGHHHHHHHHTTCSEEEECGGGHHHHHHHHHCCCBTTCCCCTTGGGTHHHHHHHHHHHTCEE
T ss_pred             hhCCCCcceEEEeccccccHHHHHHHHHhhhceeeecchhHHHHHHHhcCCccccccchhhhhhhHHHHHHHHHHcCCcc
Confidence            57899999999999999999999999999999999999999999998 79999999999999999999999999999999


Q ss_pred             ecceeEEEecCCC-CCc-eeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHH
Q 014919           81 LYPKDFWCTKIHH-PNQ-VEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC  158 (416)
Q Consensus        81 ~lP~D~~v~~~~~-~~~-~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a  158 (416)
                      ++|+|++|+++.. ... ......++||++++++||||+|+++|+++|..|+||+||||||+||.++|+.||.+|+++++
T Consensus       277 ~lp~d~~~~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~I~~aktI~wNGP~GvfE~~~F~~GT~~i~~~ia  356 (413)
T d1hdia_         277 TLPVDFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKYSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVV  356 (413)
T ss_dssp             ECCCEEEEESSSSTTCCEEEEETTTCBCTTCEEEEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHH
T ss_pred             ccccceeecccccccccccccccccccCCCceeecccchhhHHHHHHhccCCEEEEECCcccccCcchhHHHHHHHHHHH
Confidence            9999999998752 222 23345678999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccc
Q 014919          159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR  214 (416)
Q Consensus       159 ~~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~  214 (416)
                      +++..+ ++||+|||+   ++..+++.++++|+||  ||||+|+||+|+.+|++++|.+
T Consensus       357 ~~~~~~-a~sivGGGdT~aai~~~g~~~~~~hvST--GGGA~L~~L~G~~LPgi~aL~~  412 (413)
T d1hdia_         357 KATSRG-CITIIGGGDTATCCAKWNTEDNVSHVST--GGGASLELLEGKVLPGVDALSN  412 (413)
T ss_dssp             HHHHTT-CEEEECTTHHHHHHHHTTCTTTSSEECS--CHHHHHHHHTTCCCHHHHTSCB
T ss_pred             HhhcCC-CEEEEeCHHHHHHHHHcCCcCCCcEEeC--CHHHHHHHHCCCCcchhhhhhc
Confidence            987655 489999886   3456788888999999  8999999999999999999864

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=6.5e-38  Score=287.91  Aligned_cols=179  Identities=18%  Similarity=0.406  Sum_probs=158.0

Q ss_pred             ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhc
Q 014919          219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVA  294 (416)
Q Consensus       219 ~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~  294 (416)
                      +.+|.+.|++ ++++|||||||+|.++..+|+.+|+.+|+|+|+    +..|.+++.+.+++|++++++|+..+. +.+ 
T Consensus        21 ~~~w~~~f~~-~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~-~~~-   97 (204)
T d1yzha1          21 KAKWRDLFGN-DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT-DYF-   97 (204)
T ss_dssp             TTTHHHHHTS-CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG-GTS-
T ss_pred             hccHHHHcCC-CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHh-hhc-
Confidence            4679999987 689999999999999999999999999999995    566777888899999999999999874 455 


Q ss_pred             cCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeecccccc
Q 014919          295 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT  374 (416)
Q Consensus       295 ~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  374 (416)
                       ++.++|.|+++|||||+|++|+|||++++.||+.++++|||||.|+++||+.+|+++|++.+.+.++.......+    
T Consensus        98 -~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~~~~~~----  172 (204)
T d1yzha1          98 -EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLD----  172 (204)
T ss_dssp             -CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESS----
T ss_pred             -cCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCccccccccc----
Confidence             588999999999999999999999999999999999999999999999999999999999999988764443333    


Q ss_pred             ccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEE
Q 014919          375 KTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLS  410 (416)
Q Consensus       375 ~~~~~~~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~  410 (416)
                       .+.    .+.+.++.|+||+|+.++|++||++.|+
T Consensus       173 -~~~----~~~~~~~~T~yE~k~~~~G~~Iy~l~~~  203 (204)
T d1yzha1         173 -LHA----SDFEGNVMTEYEQKFSNKGQVIYRVEAE  203 (204)
T ss_dssp             -GGG----SCCCCCCCCHHHHHTGGGCCCCEEEEEE
T ss_pred             -ccc----cccCCCCCCHHHHHHHHcCCCeEEEEEE
Confidence             222    2345678999999999999999999997

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=7.8e-38  Score=287.39  Aligned_cols=182  Identities=19%  Similarity=0.400  Sum_probs=160.9

Q ss_pred             cccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhh
Q 014919          218 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIV  293 (416)
Q Consensus       218 ~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~  293 (416)
                      +..+|.+.|++ ++++|||||||+|.++..||+++|+.+|+|+|+    +..|.+++++.+++|++++++|+..++ +.+
T Consensus        18 ~~~~w~~~F~~-~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~-~~~   95 (204)
T d2fcaa1          18 YKGKWNTVFGN-DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-DVF   95 (204)
T ss_dssp             GTTCHHHHHTS-CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-HHC
T ss_pred             HHhHHHHHcCC-CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhh-ccc
Confidence            56789999998 689999999999999999999999999999996    456677777889999999999999874 445


Q ss_pred             ccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeeccccc
Q 014919          294 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECD  373 (416)
Q Consensus       294 ~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~  373 (416)
                        +++++|.|+++||+||++.+|+|+|++++.||++++|+|||||.|+++||+.+|+++|++.+.+++++....+.|.| 
T Consensus        96 --~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~~~~~~~~d~~-  172 (204)
T d2fcaa1          96 --EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYVSLDLH-  172 (204)
T ss_dssp             --CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEEESSGG-
T ss_pred             --CchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCCccccCChhhc-
Confidence              58999999999999999999999999999999999999999999999999999999999999998877555544422 


Q ss_pred             cccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeC
Q 014919          374 TKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP  412 (416)
Q Consensus       374 ~~~~~~~~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~k~  412 (416)
                              ....+.++.|+||+|+.++|++|||+.|++.
T Consensus       173 --------~~~~~~~~~T~yE~k~~~~G~~iy~~~~~~~  203 (204)
T d2fcaa1         173 --------NSNLEGNIMTEYEEKFSALGQPIYRAEVEWR  203 (204)
T ss_dssp             --------GSSCTTCCCCTTGGGSSSSSCCCEEEEEECC
T ss_pred             --------ccCCCCCCCCHHHHHHHHcCCCeEEEEEEEe
Confidence                    2234557889999999999999999999874

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.59  E-value=3.8e-15  Score=137.05  Aligned_cols=99  Identities=23%  Similarity=0.318  Sum_probs=82.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..||++.  .+++|||++    ..|++++...+++|+.|+++|+.++     |+++++||.|++
T Consensus        16 ~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~   88 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-----PFPDDSFDIITC   88 (234)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-----CSCTTCEEEEEE
T ss_pred             CCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccc-----cccccccceeee
Confidence            47899999999999999999985  489999975    4556666677889999999999886     557899999999


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .+.-.|..+.        ..++++++|+|||||++++.
T Consensus        89 ~~~l~~~~d~--------~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          89 RYAAHHFSDV--------RKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             ESCGGGCSCH--------HHHHHHHHHHEEEEEEEEEE
T ss_pred             eceeecccCH--------HHHHHHHHHeeCCCcEEEEE
Confidence            8766654332        48999999999999999884

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.57  E-value=1.3e-14  Score=132.32  Aligned_cols=99  Identities=17%  Similarity=0.282  Sum_probs=80.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..++++.  .+++|+|++..    |.+++...+.+|+.|+++|+.++     |+++++||.|++
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l-----~~~~~~fD~v~~   87 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-----PFTDERFHIVTC   87 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-----CSCTTCEEEEEE
T ss_pred             CcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccccccccccccccccccc-----cccccccccccc
Confidence            36899999999999999999885  58999997544    45555567889999999999987     556899999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ...-.|..+.        ..++++++++|||||++++.
T Consensus        88 ~~~l~~~~d~--------~~~l~~~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          88 RIAAHHFPNP--------ASFVSEAYRVLKKGGQLLLV  117 (231)
T ss_dssp             ESCGGGCSCH--------HHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccccCCH--------HHHHHHHHHhcCCCcEEEEE
Confidence            8654443322        38899999999999999985

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=6.3e-15  Score=138.97  Aligned_cols=105  Identities=14%  Similarity=0.195  Sum_probs=88.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      ++..|||||||+|.++..|++..|+.+++|+|++..+++.+++. .+|+.|+++|+.++     |+++++||.|+..+. 
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~-~~~~~~~~~d~~~l-----~~~~~sfD~v~~~~~-  156 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR-YPQVTFCVASSHRL-----PFSDTSMDAIIRIYA-  156 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH-CTTSEEEECCTTSC-----SBCTTCEEEEEEESC-
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc-cccccceeeehhhc-----cCCCCCEEEEeecCC-
Confidence            57899999999999999999999999999999998888877654 57899999999987     557899999998753 


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHH
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ  355 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~  355 (416)
                      |.              .+++++|+|||||.+++.+.+.++..++.+
T Consensus       157 ~~--------------~~~e~~rvLkpgG~l~~~~p~~~~l~el~~  188 (268)
T d1p91a_         157 PC--------------KAEELARVVKPGGWVITATPGPRHLMELKG  188 (268)
T ss_dssp             CC--------------CHHHHHHHEEEEEEEEEEEECTTTTHHHHT
T ss_pred             HH--------------HHHHHHHHhCCCcEEEEEeeCCcchHHHHH
Confidence            21              257899999999999999877666555443

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.52  E-value=3.5e-14  Score=133.38  Aligned_cols=116  Identities=17%  Similarity=0.211  Sum_probs=96.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchH----HHHHHHHHHh---CCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELV----THCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~----~~a~~~a~~~---~l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      .+.+|||+|||+|.++..||+. .|+.+++++|+.    +.|.++++..   ...|++++++|+.+.     ++++++||
T Consensus        96 PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~-----~~~~~~fD  170 (264)
T d1i9ga_          96 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-----ELPDGSVD  170 (264)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-----CCCTTCEE
T ss_pred             CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc-----cccCCCcc
Confidence            4789999999999999999998 789999999974    4455544432   357999999999875     33688999


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHh-CCCC
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE-YGKG  363 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~-~~~~  363 (416)
                      .|++..|+||             .+++++.++|||||++.+-+.+-+....+.+.++. .+|.
T Consensus       171 aV~ldlp~P~-------------~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~  220 (264)
T d1i9ga_         171 RAVLDMLAPW-------------EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT  220 (264)
T ss_dssp             EEEEESSCGG-------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred             eEEEecCCHH-------------HHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence            9999999999             67899999999999999988888888888888864 4443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.51  E-value=2.5e-14  Score=133.44  Aligned_cols=118  Identities=12%  Similarity=0.041  Sum_probs=97.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHH----HHHHHHHHh-CCCcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVT----HCRDSLQLS-GITNGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~----~a~~~a~~~-~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||+|||+|.++..||+. .|..+++++|..+    .|.+++++. +..|+.+.++|+.+.    +  ++++||.|
T Consensus        85 pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~----~--~~~~fD~V  158 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF----I--SDQMYDAV  158 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC----C--CSCCEEEE
T ss_pred             CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc----c--ccceeeee
Confidence            4789999999999999999987 6888999999754    455554443 467999999998765    2  46789999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~  366 (416)
                      +++.|+||             .+++.+.++|||||+|.+....-+....+.+.+++++|....
T Consensus       159 ~ld~p~p~-------------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~  208 (250)
T d1yb2a1         159 IADIPDPW-------------NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLE  208 (250)
T ss_dssp             EECCSCGG-------------GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEE
T ss_pred             eecCCchH-------------HHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeE
Confidence            99999998             678999999999999998877767777888888888875443

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.47  E-value=8.4e-14  Score=131.61  Aligned_cols=100  Identities=13%  Similarity=0.055  Sum_probs=80.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..||+++ +++++|+|++.    .|.+++...++. |++|+++|+.++     |+++++||.|+
T Consensus        67 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-----~~~~~sfD~V~  140 (282)
T d2o57a1          67 RQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-----PCEDNSYDFIW  140 (282)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-----SSCTTCEEEEE
T ss_pred             CCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccc-----cccccccchhh
Confidence            47899999999999999999875 67999999754    455555667775 799999999887     55689999998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +...-.+..++        ..++++++++|||||+|++.
T Consensus       141 ~~~~l~h~~d~--------~~~l~~~~~~LkpgG~l~~~  171 (282)
T d2o57a1         141 SQDAFLHSPDK--------LKVFQECARVLKPRGVMAIT  171 (282)
T ss_dssp             EESCGGGCSCH--------HHHHHHHHHHEEEEEEEEEE
T ss_pred             ccchhhhccCH--------HHHHHHHHHhcCCCcEEEEE
Confidence            87543332211        37899999999999999885

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.47  E-value=6.6e-14  Score=126.57  Aligned_cols=102  Identities=17%  Similarity=0.186  Sum_probs=78.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      +..+|||||||+|.++..+|+.  ..+++|+|++..+++.++    ..+ .++.++++|+.++     ++++++||.|++
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~-~~~~~~~~d~~~l-----~~~~~~fD~I~~  108 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKL-----SFEDKTFDYVIF  108 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSC-----CSCTTCEEEEEE
T ss_pred             CCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhcccc-ccccccccccccc-----cccCcCceEEEE
Confidence            3678999999999999999986  578999998666555443    333 4678899999887     446899999999


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      ++.-.|.....      ...+|+++.++|||||++++.+.
T Consensus       109 ~~~l~~~~~~d------~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         109 IDSIVHFEPLE------LNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             ESCGGGCCHHH------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ecchhhCChhH------HHHHHHHHHHHcCcCcEEEEEEc
Confidence            86554432111      13789999999999999988643

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.46  E-value=3.9e-14  Score=129.46  Aligned_cols=123  Identities=15%  Similarity=0.178  Sum_probs=85.9

Q ss_pred             cCCCCcccccccCccccccccccCCCCCCeEEEEeccccHHHHHHHHh--CCCCeEEEEchHHHHHHHHHH----hC-CC
Q 014919          204 RMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQL----SG-IT  276 (416)
Q Consensus       204 r~lPg~~aL~~~~p~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~--~p~~~~iGvD~~~~a~~~a~~----~~-l~  276 (416)
                      +..|+++.+.+..   ..+...+.. .+.+|||||||+|..+..|++.  .|+++++|+|++..+++.|++    .+ ..
T Consensus        17 ~~iP~Y~~~~~~i---~~~~~~~~~-~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~   92 (225)
T d1im8a_          17 RSVPGYSNIITAI---GMLAERFVT-ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEI   92 (225)
T ss_dssp             HHSTTHHHHHHHH---HHHHHHHCC-TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSS
T ss_pred             hcCCCHHHHHHHH---HHHHHHhcC-CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccc
Confidence            3456654432221   223333333 4689999999999999999986  489999999987666555543    33 34


Q ss_pred             cEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          277 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       277 nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ++++..+|+.++       +...+|.+++++...|.....      ...+|++++|+|||||.|++.
T Consensus        93 ~~~~~~~d~~~~-------~~~~~d~i~~~~~l~~~~~~d------~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_          93 PVEILCNDIRHV-------EIKNASMVILNFTLQFLPPED------RIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             CEEEECSCTTTC-------CCCSEEEEEEESCGGGSCGGG------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhccchhhcc-------ccccceeeEEeeeccccChhh------HHHHHHHHHHhCCCCceeecc
Confidence            688888888765       356789888886655432111      148999999999999999986

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=1.2e-13  Score=126.41  Aligned_cols=100  Identities=16%  Similarity=0.214  Sum_probs=79.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC-
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP-  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp-  308 (416)
                      ++.+|||||||+|.++..|++.  ..+++|+|++..+++.+++++..+  ++++|+.++     ++++++||+|++.+. 
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~--~~~~~~~~l-----~~~~~~fD~ii~~~~~  112 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKN--VVEAKAEDL-----PFPSGAFEAVLALGDV  112 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSC--EEECCTTSC-----CSCTTCEEEEEECSSH
T ss_pred             CCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccc--ccccccccc-----ccccccccceeeecch
Confidence            3678999999999999999986  679999999999998888776654  567898886     446899999986532 


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      ..|..+        ...+|+++.|+|||||.+++.+.+
T Consensus       113 ~~~~~d--------~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1         113 LSYVEN--------KDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             HHHCSC--------HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             hhhhhh--------HHHHHHHHHhhcCcCcEEEEEECC
Confidence            111111        137899999999999999997754

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.1e-13  Score=126.30  Aligned_cols=124  Identities=10%  Similarity=0.093  Sum_probs=89.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ...+|||||||+|.++..+++..+ .+++|||+++.+++.|+    ..+..|++|+++|+.++     ++++++||.|++
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~-----~~~~~~fD~I~~  133 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF-----TPEPDSYDVIWI  133 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC-----CCCSSCEEEEEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccccccccccccccccccc-----cccccccccccc
Confidence            457899999999999999887765 48999998766665544    34567899999999887     335789999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH--------------HHHHHHHHHHHhCCCCce
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE--------------EVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~--------------~~~~~~~~~~~~~~~~~~  365 (416)
                      .+.-.+.....      ...++++++++|||||.+++.....              ...+.+.+.|+++|+...
T Consensus       134 ~~~l~h~~~~~------~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii  201 (222)
T d2ex4a1         134 QWVIGHLTDQH------LAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLL  201 (222)
T ss_dssp             ESCGGGSCHHH------HHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred             ccccccchhhh------hhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEE
Confidence            86543322111      1378999999999999999852110              013445666777777644

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.44  E-value=9.7e-13  Score=116.88  Aligned_cols=116  Identities=16%  Similarity=0.253  Sum_probs=89.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.+++.+|+..  .+++|+|++    ..|.++++++++ +|++++++|+.+.+     ....++|.|+
T Consensus        33 ~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~-----~~~~~~D~v~  105 (186)
T d1l3ia_          33 KNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL-----CKIPDIDIAV  105 (186)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH-----TTSCCEEEEE
T ss_pred             CCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc-----cccCCcCEEE
Confidence            47899999999999999999875  489999964    456666677788 59999999998873     1467899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCC
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~  363 (416)
                      ++.+.     .+      .+++++.+.+.|||||++.+..-..+-.....+.+...++.
T Consensus       106 ~~~~~-----~~------~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~  153 (186)
T d1l3ia_         106 VGGSG-----GE------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFD  153 (186)
T ss_dssp             ESCCT-----TC------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCC
T ss_pred             EeCcc-----cc------chHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCC
Confidence            86321     11      24789999999999999988755444555567778887764

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=2e-13  Score=126.22  Aligned_cols=99  Identities=18%  Similarity=0.207  Sum_probs=78.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..+|++++ +.++|||++..    |++++...++. +++|+++|+.++    +  .+++||.|+
T Consensus        33 pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~----~--~~~~fD~v~  105 (245)
T d1nkva_          33 PGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY----V--ANEKCDVAA  105 (245)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC----C--CSSCEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc----c--ccCceeEEE
Confidence            468999999999999999998865 79999997544    45555566775 599999999876    1  478999998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +....-|..+.        ..++++++++|||||++++.
T Consensus       106 ~~~~~~~~~d~--------~~~l~~~~r~LkPGG~l~i~  136 (245)
T d1nkva_         106 CVGATWIAGGF--------AGAEELLAQSLKPGGIMLIG  136 (245)
T ss_dssp             EESCGGGTSSS--------HHHHHHHTTSEEEEEEEEEE
T ss_pred             EEehhhccCCH--------HHHHHHHHHHcCcCcEEEEE
Confidence            87544333221        48999999999999999985

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=4.8e-13  Score=125.86  Aligned_cols=118  Identities=12%  Similarity=0.132  Sum_probs=98.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchH----HHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELV----THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~----~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||+|||+|.++..||+.. |..+++++|++    +.|.+++++.++ .|+.+...|+...    +  ....+|.|
T Consensus       103 pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~----~--~~~~~D~V  176 (266)
T d1o54a_         103 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG----F--DEKDVDAL  176 (266)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC----C--SCCSEEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc----c--cccceeee
Confidence            47999999999999999999874 78999999964    556666667776 5799988887543    2  46789999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~  366 (416)
                      ++..|+||             .+++++.++|||||+|.+-+..-+..+.+.+.+++++|....
T Consensus       177 ~~d~p~p~-------------~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~  226 (266)
T d1o54a_         177 FLDVPDPW-------------NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIE  226 (266)
T ss_dssp             EECCSCGG-------------GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEE
T ss_pred             EecCCCHH-------------HHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEE
Confidence            99999998             789999999999999998877778888899999998875433

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.9e-12  Score=122.01  Aligned_cols=132  Identities=17%  Similarity=0.245  Sum_probs=99.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|||+|..++.+|..+|+.+++|+|++..|+    +++++++++|++|+++|..+.    +  .+++||.|+.
T Consensus       108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~----~--~~~~fDlIvs  181 (274)
T d2b3ta1         108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA----L--AGQQFAMIVS  181 (274)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG----G--TTCCEEEEEE
T ss_pred             cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc----c--CCCceeEEEe
Confidence            46789999999999999999999999999999866554    555667888999999997653    2  3578999999


Q ss_pred             ECCCCCCCCcc-----------hhhh--------hhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919          306 QCPNPDFNRPE-----------HRWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       306 ~fpdpw~k~~h-----------~krR--------l~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~  366 (416)
                      |  .|+.+...           ++..        .+...+++...+.|+|||.+++..+.. ..+.+.+.++++||....
T Consensus       182 N--PPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~-q~~~v~~~l~~~gf~~i~  258 (274)
T d2b3ta1         182 N--PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ-QGEAVRQAFILAGYHDVE  258 (274)
T ss_dssp             C--CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS-CHHHHHHHHHHTTCTTCC
T ss_pred             c--chhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECch-HHHHHHHHHHHCCCCeEE
Confidence            8  45543221           0111        123578999999999999999987643 356677888888886544


Q ss_pred             eecc
Q 014919          367 LVQD  370 (416)
Q Consensus       367 ~~~d  370 (416)
                      +..|
T Consensus       259 ~~kD  262 (274)
T d2b3ta1         259 TCRD  262 (274)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            4444

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.38  E-value=1.1e-12  Score=117.39  Aligned_cols=100  Identities=12%  Similarity=0.098  Sum_probs=78.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||||||+|..+..||++  ..+++|+|+++.+++    +++..+++|+++...|+..+     + .+++||.|+++
T Consensus        31 ~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~fD~I~~~  102 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTL-----T-FDGEYDFILST  102 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTC-----C-CCCCEEEEEEE
T ss_pred             CCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccc-----c-ccccccEEEEe
Confidence            468999999999999999998  468999998665544    44567889999999998876     2 36899999987


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +.-.+....      ..+.++++++++|+|||.+++.+
T Consensus       103 ~~~~~~~~~------~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         103 VVMMFLEAQ------TIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             SCGGGSCTT------HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eeeecCCHH------HHHHHHHHHHHHcCCCcEEEEEE
Confidence            653332111      12489999999999999998864

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.38  E-value=8.7e-13  Score=121.52  Aligned_cols=102  Identities=19%  Similarity=0.251  Sum_probs=75.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      +..+|||||||+|.++..|+++  ..+++|||+++.+++.|+    +.++ ++.|+++|+.++     + .+++||.|++
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l-----~-~~~~fD~I~~  111 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEI-----A-FKNEFDAVTM  111 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGC-----C-CCSCEEEEEE
T ss_pred             CCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccc-cchheehhhhhc-----c-cccccchHhh
Confidence            4678999999999999999997  458999997665555443    3343 799999999887     3 2468999987


Q ss_pred             ECCC-CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          306 QCPN-PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       306 ~fpd-pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      .+.- .|. ...     -...+|++++++|||||.+++...+
T Consensus       112 ~~~~~~~~-~~~-----~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         112 FFSTIMYF-DEE-----DLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             CSSGGGGS-CHH-----HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhhhhcC-ChH-----HHHHHHHHHHHHcCCCcEEEEEecc
Confidence            6421 121 110     1137899999999999999986544

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.37  E-value=2.2e-12  Score=118.66  Aligned_cols=125  Identities=14%  Similarity=0.024  Sum_probs=91.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+.+|||||||+|.++..+|+..|+..++|+|++..+++.+.+  ...+|+.++.+|+... ..+   .+..+|.++++.
T Consensus        74 pG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~-~~~---~~~~~~v~~i~~  149 (230)
T d1g8sa_          74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKP-QEY---ANIVEKVDVIYE  149 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCG-GGG---TTTCCCEEEEEE
T ss_pred             CCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccC-ccc---ccccceeEEeec
Confidence            5789999999999999999999999999999998877776544  3457899999999876 222   244455544432


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE---------eCcHHHHHHHHHHHHhCCCCcee
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ---------SDIEEVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~---------tD~~~~~~~~~~~~~~~~~~~~~  366 (416)
                      ...++..        ...++.++.+.|||||.+++.         .+....++...+.|++.||....
T Consensus       150 ~~~~~~~--------~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive  209 (230)
T d1g8sa_         150 DVAQPNQ--------AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVD  209 (230)
T ss_dssp             CCCSTTH--------HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEE
T ss_pred             cccchHH--------HHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEE
Confidence            2222211        147899999999999998885         23345567777888888886543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.36  E-value=4.6e-12  Score=114.87  Aligned_cols=123  Identities=15%  Similarity=0.078  Sum_probs=85.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+.+|||||||+|..+..+|+..|+.+++|+|+++.+++.+.+  ...+|+.++.+|+... +... .....+|.++..+
T Consensus        56 pg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~-~~~~-~~~~~vd~v~~~~  133 (209)
T d1nt2a_          56 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKP-WKYS-GIVEKVDLIYQDI  133 (209)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCG-GGTT-TTCCCEEEEEECC
T ss_pred             CCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCc-cccc-cccceEEEEEecc
Confidence            4789999999999999999999999999999987665554432  2356999999999875 2211 1234566665544


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe-----C----cHHHHHHHHHHHHhCCCCce
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-----D----IEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t-----D----~~~~~~~~~~~~~~~~~~~~  365 (416)
                      +.|+          ....++++++++|||||.+++..     |    ....++...+.++ .+|...
T Consensus       134 ~~~~----------~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~-~gf~i~  189 (209)
T d1nt2a_         134 AQKN----------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEME-GDFKIV  189 (209)
T ss_dssp             CSTT----------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHH-TTSEEE
T ss_pred             cChh----------hHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHH-cCCEEE
Confidence            3332          12478999999999999998853     2    2334444444444 466543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.35  E-value=3.9e-12  Score=113.56  Aligned_cols=115  Identities=13%  Similarity=0.235  Sum_probs=82.2

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCC--cEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~--nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||||||+|.+++.+|+..|  +++|+|++..+    .++++.++++  +++++.+|..+.    +  ++++||.|
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~----~--~~~~fD~I  123 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN----V--KDRKYNKI  123 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT----C--TTSCEEEE
T ss_pred             CCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh----h--ccCCceEE
Confidence            478999999999999999998865  79999975544    4445556665  489999998653    2  47899999


Q ss_pred             EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHh
Q 014919          304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE  359 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~  359 (416)
                      +++  .|++...     -....+++++.++|||||.+++........+.+.+.+++
T Consensus       124 i~~--~p~~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~  172 (194)
T d1dusa_         124 ITN--PPIRAGK-----EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKD  172 (194)
T ss_dssp             EEC--CCSTTCH-----HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHH
T ss_pred             EEc--ccEEecc-----hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHH
Confidence            987  3332111     123578999999999999998865444333444444443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.35  E-value=2.5e-12  Score=120.08  Aligned_cols=116  Identities=16%  Similarity=0.305  Sum_probs=87.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|||+|.+++.+++.  ..+++|+|+    +..|+++++.+++ +++++++|+.+.+      +.++||.|++
T Consensus       120 ~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~-~~~~~~~d~~~~~------~~~~fD~V~a  190 (254)
T d2nxca1         120 PGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGV-RPRFLEGSLEAAL------PFGPFDLLVA  190 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTC-CCEEEESCHHHHG------GGCCEEEEEE
T ss_pred             ccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCC-ceeEEeccccccc------cccccchhhh
Confidence            3689999999999999988875  468999996    4556666666777 4688999987642      3678999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL  365 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~  365 (416)
                      |...      +     ....+++++.++|||||+|+++--.....+.+.+.++++++...
T Consensus       191 ni~~------~-----~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~  239 (254)
T d2nxca1         191 NLYA------E-----LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPL  239 (254)
T ss_dssp             ECCH------H-----HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEE
T ss_pred             cccc------c-----cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEE
Confidence            8421      1     12478899999999999999853223345667788889888643

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.34  E-value=1.1e-12  Score=122.56  Aligned_cols=103  Identities=19%  Similarity=0.234  Sum_probs=80.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      ...++||+|||+|.++..|+..+.+ +++|||.+..+++.+++.  +.++++|+++|+.++     ++++++||.|+++.
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~I~~~~  166 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA-----TLPPNTYDLIVIQW  166 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGC-----CCCSSCEEEEEEES
T ss_pred             CCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEcccccc-----ccCCCccceEEeec
Confidence            4679999999999999998877654 899999988877777643  456799999999887     33578999999986


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +-.|..+.      ....+|++++++|+|||.|++..
T Consensus       167 vl~hl~d~------d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         167 TAIYLTDA------DFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             CGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchh------hhHHHHHHHHHhcCCCcEEEEEe
Confidence            54332111      11378999999999999999863

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.33  E-value=1.2e-12  Score=119.45  Aligned_cols=100  Identities=15%  Similarity=0.179  Sum_probs=80.2

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      +.+|||||||+|.++..++++.  .+++|||++..+++.+++....|+.++++|+.++     + .+++||.|++...-.
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~-----~-~~~~fD~I~~~~vle   92 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDA-----Q-LPRRYDNIVLTHVLE   92 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-----C-CSSCEEEEEEESCGG
T ss_pred             CCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhccccccccccccccccc-----c-cccccccccccceeE
Confidence            5689999999999999999874  5799999998888888766667899999998876     2 368999999875433


Q ss_pred             CCCCcchhhhhhhHHHHHHHH-hhccCCcEEEEEeCc
Q 014919          311 DFNRPEHRWRMVQRSLVEAVS-DLLVHDGKVFLQSDI  346 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~-r~LkpgG~l~l~tD~  346 (416)
                      |..++        ..+|+++. ++|+|||.+++.+.+
T Consensus        93 h~~d~--------~~~l~~i~~~~Lk~gG~l~i~~pn  121 (225)
T d2p7ia1          93 HIDDP--------VALLKRINDDWLAEGGRLFLVCPN  121 (225)
T ss_dssp             GCSSH--------HHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             ecCCH--------HHHHHHHHHHhcCCCceEEEEeCC
Confidence            32221        37888887 899999999998654

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.5e-12  Score=123.02  Aligned_cols=116  Identities=14%  Similarity=0.111  Sum_probs=89.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHH----HHHHHHHHh-----------CCCcEEEEEcChhhhhhhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVT----HCRDSLQLS-----------GITNGYFIATNATSTFRSIV  293 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~----~a~~~a~~~-----------~l~nv~f~~~Da~~l~~~~~  293 (416)
                      .+.+|||+|||+|.++..||+. .|+.+++++|+.+    .|.++.++.           ...|+.+.++|+.....   
T Consensus        98 pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~---  174 (324)
T d2b25a1          98 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE---  174 (324)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred             CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc---
Confidence            4799999999999999999987 6889999999644    444444322           14689999999876522   


Q ss_pred             ccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCC
Q 014919          294 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG  361 (416)
Q Consensus       294 ~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~  361 (416)
                      ...+.+||.|++..|+||             ..+.++.++|||||+|.+-+.+-+....+.+.++.++
T Consensus       175 ~~~~~~fD~V~LD~p~P~-------------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~  229 (324)
T d2b25a1         175 DIKSLTFDAVALDMLNPH-------------VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCE  229 (324)
T ss_dssp             ------EEEEEECSSSTT-------------TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHT
T ss_pred             ccCCCCcceEeecCcCHH-------------HHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence            124678999999999999             5789999999999999987777777777888887654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.33  E-value=2e-12  Score=119.30  Aligned_cols=103  Identities=14%  Similarity=0.127  Sum_probs=75.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|.++..||++.  .+++|||.++.+++.|    ...++ |++|+++|+.++     + .+++||.|++
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~-----~-~~~~fD~i~~  107 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNL-----N-INRKFDLITC  107 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGC-----C-CSCCEEEEEE
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCc-cceeeccchhhh-----c-ccccccccce
Confidence            35789999999999999999985  4899999766555444    33444 799999999886     2 2578999987


Q ss_pred             ECC-CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          306 QCP-NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       306 ~fp-dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      .+. -.+...  .+.   ...+|++++++|||||.|++....
T Consensus       108 ~~~~~~~~~~--~~~---~~~~l~~~~~~LkpgG~~i~~~~~  144 (246)
T d1y8ca_         108 CLDSTNYIID--SDD---LKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             CTTGGGGCCS--HHH---HHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             eeeeeeccCC--HHH---HHHHHHHHHHhCCCCeEEEEEeCC
Confidence            532 112111  111   137899999999999999985543

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.31  E-value=1.3e-12  Score=117.22  Aligned_cols=92  Identities=13%  Similarity=0.162  Sum_probs=74.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      ...|||||||+|.++..++      +++|||++..+++.++++   |+.++++|+.++     ++++++||.|++++.-.
T Consensus        37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~---~~~~~~~d~~~l-----~~~~~~fD~I~~~~~l~  102 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR---GVFVLKGTAENL-----PLKDESFDFALMVTTIC  102 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT---TCEEEECBTTBC-----CSCTTCEEEEEEESCGG
T ss_pred             CCeEEEECCCCcccccccc------eEEEEeCChhhccccccc---cccccccccccc-----ccccccccccccccccc
Confidence            4579999999999988774      358999998888877653   689999999887     44688999999886555


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      |..+.        ..++++++++|+|||.+++.+
T Consensus       103 h~~d~--------~~~l~~~~~~L~pgG~l~i~~  128 (208)
T d1vlma_         103 FVDDP--------ERALKEAYRILKKGGYLIVGI  128 (208)
T ss_dssp             GSSCH--------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccc--------ccchhhhhhcCCCCceEEEEe
Confidence            43221        378999999999999999875

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.31  E-value=4.9e-12  Score=117.34  Aligned_cols=111  Identities=14%  Similarity=0.129  Sum_probs=80.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|..+..+++.. ..+++|||+++.+++.|+    ..+. .++.|+++|+....   ++ ..++||.|+
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~---~~-~~~~fD~V~   98 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH---MD-LGKEFDVIS   98 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC---CC-CSSCEEEEE
T ss_pred             CcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhc---cc-ccccceEEE
Confidence            46899999999999999999874 358999998776665554    2333 37999999996541   11 357899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV  349 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~  349 (416)
                      +++.-.|......    ....++++++++|||||+|++.+.+.+.
T Consensus        99 ~~~~l~~~~~~~~----~~~~~l~~i~~~Lk~gG~~i~~~~~~~~  139 (252)
T d1ri5a_          99 SQFSFHYAFSTSE----SLDIAQRNIARHLRPGGYFIMTVPSRDV  139 (252)
T ss_dssp             EESCGGGGGSSHH----HHHHHHHHHHHTEEEEEEEEEEEECHHH
T ss_pred             EcceeeecCCCHH----HHHHHHHHHhceeCCCCEEEEEecCHHH
Confidence            9875444211111    1147899999999999999987655433

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.31  E-value=3.4e-12  Score=118.75  Aligned_cols=101  Identities=18%  Similarity=0.280  Sum_probs=78.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ...+|||||||+|.++..+++++|+.+++++|+   +..+.+++...++ .+++++.+|+.+.       .+.++|.|++
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-------~~~~~D~v~~  152 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP-------LPRKADAIIL  152 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC-------CSSCEEEEEE
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhh-------cccchhheee
Confidence            467999999999999999999999999999995   5566666666665 5799999998543       2457999988


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .+.-....+.      ....+|++++++|||||+|++.
T Consensus       153 ~~vlh~~~d~------~~~~~L~~~~~~LkPGG~l~i~  184 (253)
T d1tw3a2         153 SFVLLNWPDH------DAVRILTRCAEALEPGGRILIH  184 (253)
T ss_dssp             ESCGGGSCHH------HHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccccccCCch------hhHHHHHHHHHhcCCCcEEEEE
Confidence            7432211111      1137899999999999999885

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.30  E-value=3.1e-12  Score=120.89  Aligned_cols=100  Identities=14%  Similarity=0.175  Sum_probs=78.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC-CeEEEEchHHHHHHHHHH----hCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~~a~~~a~~----~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ++.+|||||||+|.++..+|+..|. .+++|+|++..+++.+++    .+ .|++|+++|+.++     + .+++||.|+
T Consensus        27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~-~~~~f~~~d~~~~-----~-~~~~fD~v~   99 (281)
T d2gh1a1          27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-YDSEFLEGDATEI-----E-LNDKYDIAI   99 (281)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS-SEEEEEESCTTTC-----C-CSSCEEEEE
T ss_pred             CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc-ccccccccccccc-----c-ccCCceEEE
Confidence            4678999999999999999998874 789999987665555443    23 3799999999876     3 246899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +++.-.|..++        ..+|++++++|||||.+++..
T Consensus       100 ~~~~l~~~~d~--------~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1         100 CHAFLLHMTTP--------ETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             EESCGGGCSSH--------HHHHHHHHHTEEEEEEEEEEE
T ss_pred             EehhhhcCCCH--------HHHHHHHHHHcCcCcEEEEEE
Confidence            88654443221        378999999999999998754

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.5e-12  Score=116.93  Aligned_cols=106  Identities=9%  Similarity=-0.093  Sum_probs=77.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh---CCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~---~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+.+|||||||+|.++..+|++.| .+++|||++..+++.+++.   ...++.++..|+.....   ++++++||.|++ 
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~i~f-  127 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAP---TLPDGHFDGILY-  127 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGG---GSCTTCEEEEEE-
T ss_pred             CCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhccccccccccccccccc---ccccccccceee-
Confidence            467999999999999999998755 5899999876655555432   23568899999887633   235789999975 


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                        |.+....+..+....+.++++++|+|||||+|.+
T Consensus       128 --D~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1         128 --DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             --CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             --cccccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence              4433332222223346899999999999999987

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.29  E-value=1.5e-12  Score=114.69  Aligned_cols=103  Identities=10%  Similarity=0.018  Sum_probs=77.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-C---------------CCcEEEEEcChhhhhhhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-G---------------ITNGYFIATNATSTFRSIV  293 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-~---------------l~nv~f~~~Da~~l~~~~~  293 (416)
                      .+.+|||+|||+|..+..||++  +.+++|+|+++.+++.+++. +               ..++.|+++|+.++...  
T Consensus        20 ~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~--   95 (201)
T d1pjza_          20 PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR--   95 (201)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH--
T ss_pred             CCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc--
Confidence            4789999999999999999997  78999999988877776542 1               23467888888776221  


Q ss_pred             ccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          294 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       294 ~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                        ...++|.|+..+.-.+....      ....+++.++++|||||.+++.+
T Consensus        96 --~~~~~D~i~~~~~l~~l~~~------~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          96 --DIGHCAAFYDRAAMIALPAD------MRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             --HHHSEEEEEEESCGGGSCHH------HHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             --cccceeEEEEEeeeEecchh------hhHHHHHHHHHhcCCCcEEEEEE
Confidence              24679999877543332111      12478999999999999988754

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.3e-12  Score=115.47  Aligned_cols=103  Identities=12%  Similarity=0.007  Sum_probs=78.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC---------------------CCcEEEEEcChhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---------------------ITNGYFIATNATST  288 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~---------------------l~nv~f~~~Da~~l  288 (416)
                      .+.+|||+|||+|..+..||++  +.+|+|||+|+.|++.+.+..                     ..++.++++|+.++
T Consensus        45 ~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l  122 (229)
T d2bzga1          45 SGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL  122 (229)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred             CCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence            4689999999999999999997  789999999998887765421                     13789999999887


Q ss_pred             hhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          289 FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       289 ~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      .    +...+.+|.|+....-.....   .   ..+.+++++.++|||||++++.+
T Consensus       123 ~----~~~~~~fd~i~~~~~l~~~~~---~---~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         123 P----RTNIGKFDMIWDRGALVAINP---G---DRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             G----GSCCCCEEEEEESSSTTTSCG---G---GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             c----ccccCceeEEEEEEEEEeccc---h---hhHHHHHHHHhhcCCcceEEEEE
Confidence            2    224688999986543222111   1   12588999999999999987764

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=2.4e-11  Score=114.81  Aligned_cols=100  Identities=17%  Similarity=0.239  Sum_probs=74.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ++.+|||||||+|.++..+|+++ +++++|||++..    |.+++++.++. ++.+...|..++        +++||.|+
T Consensus        52 ~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--------~~~fD~i~  122 (280)
T d2fk8a1          52 PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--------AEPVDRIV  122 (280)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--------CCCCSEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh--------ccchhhhh
Confidence            47899999999999999999887 479999997654    44555556764 588888886654        57899998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +.-.--+...   +   ..+.++++++++|||||++++.+
T Consensus       123 si~~~eh~~~---~---~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         123 SIEAFEHFGH---E---NYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             EESCGGGTCG---G---GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             HhhHHHHhhh---h---hHHHHHHHHHhccCCCceEEEEE
Confidence            7632111111   1   12589999999999999999864

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=2.6e-11  Score=114.85  Aligned_cols=100  Identities=18%  Similarity=0.223  Sum_probs=75.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.+++.+|+.+ +++++||+++.    .|.+++++.++ +++++..+|..++        +++||.|+
T Consensus        62 ~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~--------~~~fD~i~  132 (285)
T d1kpga_          62 PGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--------DEPVDRIV  132 (285)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC--------CCCCSEEE
T ss_pred             CCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc--------ccccccee
Confidence            57999999999999999999998 58999999854    45555555554 5799999998765        46788887


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ....--+.  .+ +   -.+.++++++++|||||++++.+
T Consensus       133 si~~~eh~--~~-~---~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         133 SIGAFEHF--GH-E---RYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             EESCGGGT--CT-T---THHHHHHHHHHHSCTTCEEEEEE
T ss_pred             eehhhhhc--Cc-h---hHHHHHHHHHhhcCCCCcEEEEE
Confidence            65321111  11 1   12489999999999999999864

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=3.5e-11  Score=114.27  Aligned_cols=102  Identities=14%  Similarity=0.181  Sum_probs=76.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ++.+|||||||+|.++..+|++++ ++++|++++.    .+.++++..++. ++.+...|...        .+++||.|+
T Consensus        61 ~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~--------~~~~fD~i~  131 (291)
T d1kpia_          61 PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE--------FDEPVDRIV  131 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG--------CCCCCSEEE
T ss_pred             CCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc--------cccccceEe
Confidence            589999999999999999999885 7999999754    345566667776 48888888643        378899997


Q ss_pred             EE-----CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQ-----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~-----fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ..     ++++- ...+.+   ..+.++++++++|||||++++.+
T Consensus       132 sie~~eH~~~~~-~~~~~~---~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         132 SLGAFEHFADGA-GDAGFE---RYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             EESCGGGTTCCS-SCCSTT---HHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             echhHHhcchhh-hhhHHH---HHHHHHHHHHHhCCCCCceEEEE
Confidence            65     23221 001111   23689999999999999999874

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=1e-11  Score=112.76  Aligned_cols=96  Identities=17%  Similarity=0.176  Sum_probs=75.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||||||+|.++..||+.. |...++++|+    .+.|.++++..++.|+.++++|+.+.+.     .+++||.|+
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~-----~~~~fD~I~  149 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP-----EFSPYDVIF  149 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----GGCCEEEEE
T ss_pred             ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccc-----cccchhhhh
Confidence            47899999999999999999875 6789999996    4556666667789999999999887521     367899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +.+.-++              +.+.+.+.|||||+|++..
T Consensus       150 ~~~~~~~--------------~p~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         150 VTVGVDE--------------VPETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             ECSBBSC--------------CCHHHHHHEEEEEEEEEEB
T ss_pred             hhccHHH--------------hHHHHHHhcCCCcEEEEEE
Confidence            8764332              1235678899999998854

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.18  E-value=4.4e-11  Score=111.46  Aligned_cols=101  Identities=18%  Similarity=0.219  Sum_probs=76.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ...+|||||||+|.++..+++++|+.+++++|+   +..+.+++...++ +++.++.+|...-       .+..+|.+++
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-------~p~~~D~v~~  153 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKP-------LPVTADVVLL  153 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-------CSCCEEEEEE
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeecccc-------ccccchhhhc
Confidence            357899999999999999999999999999996   4455666666665 4699999987542       2456999988


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .+.-..+.+  .    ....+|++++++|||||+|++.
T Consensus       154 ~~vLh~~~d--~----~~~~lL~~i~~~LkpgG~llI~  185 (256)
T d1qzza2         154 SFVLLNWSD--E----DALTILRGCVRALEPGGRLLVL  185 (256)
T ss_dssp             ESCGGGSCH--H----HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccccCc--H----HHHHHHHHHHhhcCCcceeEEE
Confidence            743221111  0    1137899999999999999885

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.15  E-value=1.7e-10  Score=110.87  Aligned_cols=131  Identities=15%  Similarity=0.092  Sum_probs=92.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||++||+|.+++.+|..  ..+++++|++..+    .++++.+|++|++++++|+.+++... +...++||.|++
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~-~~~~~~fD~Vi~  221 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRL-EKEGERFDLVVL  221 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHH-HHTTCCEEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhh-HhhhcCCCEEEE
Confidence            4689999999999999999875  5689999975554    45556789999999999998874432 224678999998


Q ss_pred             ECCCCCCCCcchhhhh--hhHHHHHHHHhhccCCcEEEEEeCc-----HHHHHHHHHHHHhCCCCc
Q 014919          306 QCPNPDFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl--~~~~~l~~i~r~LkpgG~l~l~tD~-----~~~~~~~~~~~~~~~~~~  364 (416)
                      ..| .+.+......+.  .+.+++..+.++|+|||.|++.|..     ..+.+-+.+.+...+...
T Consensus       222 DpP-~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~  286 (318)
T d1wxxa2         222 DPP-AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLL  286 (318)
T ss_dssp             CCC-CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             cCC-ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCE
Confidence            632 222222222121  1357899999999999999997643     334444445666666543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=2.5e-10  Score=104.43  Aligned_cols=103  Identities=15%  Similarity=0.121  Sum_probs=79.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+.+|||+|||+|.++..||+.. |...++|+|+++.+++.+.+  ....|+..+..|+... ..+ +.....+|.|+..
T Consensus        73 pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~-~~~-~~~~~~vD~i~~d  150 (227)
T d1g8aa_          73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKP-EEY-RALVPKVDVIFED  150 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCG-GGG-TTTCCCEEEEEEC
T ss_pred             CCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCc-ccc-cccccceEEEEEE
Confidence            47999999999999999999985 78899999987776665543  3457899999998765 222 2235689999876


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ++.|.          ....+++++.+.|||||.+++.+
T Consensus       151 ~~~~~----------~~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         151 VAQPT----------QAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             CCSTT----------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccc----------hHHHHHHHHHHhcccCCeEEEEE
Confidence            55442          12478999999999999998863

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=2.6e-10  Score=107.74  Aligned_cols=113  Identities=8%  Similarity=0.025  Sum_probs=73.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCC----cEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT----NGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~----nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      +..+|||||||+|.++..||++  +.+++|+|++..+++.|+    ..+..    +..+...|...+ +..+| ..++||
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~fd  131 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL-DKDVP-AGDGFD  131 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH-HHHSC-CTTCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccc-ccccC-CCCCce
Confidence            3578999999999999999987  579999998766655443    33322    345566666554 22233 357899


Q ss_pred             EEEEEC-CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919          302 LVSIQC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE  347 (416)
Q Consensus       302 ~v~~~f-pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~  347 (416)
                      .|++.+ .-.+......- ..-...+|++++++|||||.|++.+-+.
T Consensus       132 ~v~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~li~~~~~~  177 (292)
T d1xvaa_         132 AVICLGNSFAHLPDSKGD-QSEHRLALKNIASMVRPGGLLVIDHRNY  177 (292)
T ss_dssp             EEEECSSCGGGSCCTTSS-SHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             EEEEecCchhhcCCcccC-hHHHHHHHHHHHHHcCcCcEEEEeecCH
Confidence            997643 11111111000 0012479999999999999999976543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.4e-10  Score=104.41  Aligned_cols=96  Identities=16%  Similarity=0.266  Sum_probs=72.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEch----HHHHHHHHHHhC-----CCcEEEEEcChhhhhhhhhccCCCc
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEL----VTHCRDSLQLSG-----ITNGYFIATNATSTFRSIVASYPGK  299 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~----~~~a~~~a~~~~-----l~nv~f~~~Da~~l~~~~~~~~~~s  299 (416)
                      .+.+|||||||+|..+..||+. .|..+++|+|+    ...|.+++++.+     ..|+.+..+|+.....     ..++
T Consensus        76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~-----~~~~  150 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-----EEAP  150 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-----GGCC
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc-----hhhh
Confidence            4689999999999999999986 57889999996    444555554443     4679999999987521     4678


Q ss_pred             eeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          300 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       300 ~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ||.|++....++              ..+.+.+.|||||++++-.
T Consensus       151 fD~I~~~~~~~~--------------ip~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         151 YDAIHVGAAAPV--------------VPQALIDQLKPGGRLILPV  181 (224)
T ss_dssp             EEEEEECSBBSS--------------CCHHHHHTEEEEEEEEEEE
T ss_pred             hhhhhhhcchhh--------------cCHHHHhhcCCCcEEEEEE
Confidence            999998754432              1235678999999999854

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.02  E-value=1.3e-09  Score=104.76  Aligned_cols=131  Identities=15%  Similarity=0.103  Sum_probs=90.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+.+|||+|||+|.+++.+|... ..+++++|++..+    .++++.+|+. +++|+++|+.+.+... +....+||.|+
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~-~~~~~~fD~Vi  222 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKL-QKKGEKFDIVV  222 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH-HHTTCCEEEEE
T ss_pred             CCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHH-HhccCCCCchh
Confidence            37899999999999999999874 3589999975554    4555667874 7999999998865432 22467899999


Q ss_pred             EECCCCCCCCcchhhhh--hhHHHHHHHHhhccCCcEEEEEeC-----cHHHHHHHHHHHHhCCCC
Q 014919          305 IQCPNPDFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQSD-----IEEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl--~~~~~l~~i~r~LkpgG~l~l~tD-----~~~~~~~~~~~~~~~~~~  363 (416)
                      +.-| .+.+......+.  .+.+++....++|+|||.|++.|-     .+.+.+.+.+...+.+..
T Consensus       223 ~DpP-~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~gr~  287 (324)
T d2as0a2         223 LDPP-AFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKF  287 (324)
T ss_dssp             ECCC-CSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEE
T ss_pred             cCCc-cccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcCCe
Confidence            8622 222222211111  235788999999999999998763     344455555666666643

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.4e-10  Score=106.00  Aligned_cols=105  Identities=12%  Similarity=0.045  Sum_probs=72.8

Q ss_pred             CeEEEEeccccHHHHHHHHh----CCC--CeEEEEchHHHHHHHHHHh-----CCCcEE--EEEcChhhhhhhh-hccCC
Q 014919          232 PLVVDIGSGNGLFLLGMARK----RKD--LNFLGLELVTHCRDSLQLS-----GITNGY--FIATNATSTFRSI-VASYP  297 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~----~p~--~~~iGvD~~~~a~~~a~~~-----~l~nv~--f~~~Da~~l~~~~-~~~~~  297 (416)
                      .+|||||||+|.++..+++.    +|.  ..++|||.+..+++.+++.     .+.++.  +.+.++.++.... .+.++
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL  121 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence            37999999999998877654    444  4689999876666555432     345554  4555555432111 12357


Q ss_pred             CceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          298 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       298 ~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ++||.|++.+.-.|..+.        +.+|+.++++|+|||.+++.+
T Consensus       122 ~~fD~I~~~~~l~~~~d~--------~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         122 QKWDFIHMIQMLYYVKDI--------PATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             CCEEEEEEESCGGGCSCH--------HHHHHHHHHTEEEEEEEEEEE
T ss_pred             CceeEEEEccceecCCCH--------HHHHHHHHhhCCCCCEEEEEE
Confidence            899999998766665332        389999999999999988864

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2e-10  Score=110.83  Aligned_cols=100  Identities=15%  Similarity=0.123  Sum_probs=71.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH-----------HhC--CCcEEEEEcChhhhhhhhhccC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ-----------LSG--ITNGYFIATNATSTFRSIVASY  296 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~-----------~~~--l~nv~f~~~Da~~l~~~~~~~~  296 (416)
                      ++.++||||||+|..+..+|+.++..+++|||++..+.+.++           ..|  ..|+.|+++|+.+. +  +  .
T Consensus       151 ~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~-~--~--~  225 (328)
T d1nw3a_         151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE-E--W--R  225 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH-H--H--H
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc-c--c--c
Confidence            478999999999999999999999889999997554433221           123  45899999999876 2  1  1


Q ss_pred             CC--ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          297 PG--KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       297 ~~--s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      +.  ..|+|+++.--.+   .    .  -...|.++.+.|||||+++..
T Consensus       226 ~~~~~advi~~~~~~f~---~----~--~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         226 ERIANTSVIFVNNFAFG---P----E--VDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             HHHHHCSEEEECCTTTC---H----H--HHHHHHHHHTTCCTTCEEEES
T ss_pred             cccCcceEEEEcceecc---h----H--HHHHHHHHHHhCCCCcEEEEe
Confidence            22  3577777521111   0    0  136789999999999999763

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=1e-09  Score=105.04  Aligned_cols=100  Identities=16%  Similarity=0.209  Sum_probs=73.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchH---HHHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~---~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||||||+|.+++.+|+.. ..+++|+|.+   ..+.+.++.+++. ++.++++|+.++     +.+.+++|.|+..
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~-----~~~~~~~D~ivs~  107 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-----ELPVEKVDIIISE  107 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC-----CCSSSCEEEEEEC
T ss_pred             cCEEEEEecCCcHHHHHHHHhC-CCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHc-----ccccceeEEEeee
Confidence            6889999999999999888864 3589999963   4455556667765 599999999887     3356899999765


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  341 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~  341 (416)
                      .......  +.   -..+.++..+.++|||||.++
T Consensus       108 ~~~~~l~--~e---~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         108 WMGYCLF--YE---SMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CCBBTBT--BT---CCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeec--cH---HHHHHHHHHHHhcCCCCeEEE
Confidence            3322110  10   122588999999999999886

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=1.6e-09  Score=104.02  Aligned_cols=100  Identities=15%  Similarity=0.256  Sum_probs=73.7

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchH---HHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~---~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||||||+|.+++.+|++. ..+++|+|.+   ..|++.+++++. .++.++++|+.++     +++++++|.|+..
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l-----~~~~~~~D~i~se  112 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDV-----HLPFPKVDIIISE  112 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-----CCSSSCEEEEEEC
T ss_pred             cCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhc-----cCcccceeEEEEE
Confidence            6899999999999998877763 4589999964   455566666665 4799999999887     3357899999875


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  341 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~  341 (416)
                      .........     ...+.++....|+|||||.++
T Consensus       113 ~~~~~~~~e-----~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         113 WMGYFLLYE-----SMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CCBTTBSTT-----CCHHHHHHHHHHHEEEEEEEE
T ss_pred             ecceeeccc-----hhHHHHHHHHHhccCCCeEEE
Confidence            333221111     123578888999999999975

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.94  E-value=5e-09  Score=100.26  Aligned_cols=113  Identities=12%  Similarity=0.149  Sum_probs=79.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCC--CcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGI--TNGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l--~nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||+.||+|.+++.+|.. ....+++||++    ..+.++++.+++  .|++|+++|+.+.++.... ....||.|
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~-~~~~fD~I  221 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR-HHLTYDII  221 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH-TTCCEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHh-hcCCCCEE
Confidence            3689999999999999987765 34579999974    445555666776  4799999999887654321 35689999


Q ss_pred             EEECCCCCCCCcchhhhhh--hHHHHHHHHhhccCCcEEEEEeC
Q 014919          304 SIQCPNPDFNRPEHRWRMV--QRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       304 ~~~fpdpw~k~~h~krRl~--~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      ++. |..+.+.+....+..  +.++++.+.++|+|||.|++.|.
T Consensus       222 i~D-PP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         222 IID-PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             EEC-CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEc-ChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            885 333322222111221  35789999999999999999874

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.2e-09  Score=101.06  Aligned_cols=101  Identities=17%  Similarity=0.201  Sum_probs=73.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH---HHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH---CRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~---a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +.+|||||||+|.+++.+|++.+ .+++|+|.++.   +.+.+.+++. .++.++++|+.++     +.++.++|.|+..
T Consensus        36 ~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l-----~~~~~~~D~Ivse  109 (311)
T d2fyta1          36 DKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-----HLPVEKVDVIISE  109 (311)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-----CCSCSCEEEEEEC
T ss_pred             cCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHh-----cCccccceEEEEe
Confidence            68999999999999998888754 58999997543   3444445554 5799999999987     3356899999875


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      .........     ...+.++....+.|||||.++.
T Consensus       110 ~~~~~~~~e-----~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         110 WMGYFLLFE-----SMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             CCBTTBTTT-----CHHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeecccc-----cccHHHHHHHHhcCCCCcEEec
Confidence            433321111     1235778888999999998863

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.90  E-value=2.1e-09  Score=91.93  Aligned_cols=102  Identities=18%  Similarity=0.223  Sum_probs=73.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ++.+|||+|||+|.++++.+.+.. .+++++|....|    .++++..++.| ++++++|+..+++.    ..++||.|+
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~----~~~~fDiIf   88 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC----LTGRFDLVF   88 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH----BCSCEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccc----cccccceeE
Confidence            468999999999999999888755 499999975544    44455556654 99999999887532    367899998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHH--hhccCCcEEEEEeC
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSD  345 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~--r~LkpgG~l~l~tD  345 (416)
                      +.  .|+.+.       .....++.+.  ++|+|+|.+++.+.
T Consensus        89 ~D--PPy~~~-------~~~~~l~~i~~~~~L~~~g~iiiE~~  122 (152)
T d2esra1          89 LD--PPYAKE-------TIVATIEALAAKNLLSEQVMVVCETD  122 (152)
T ss_dssp             EC--CSSHHH-------HHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             ec--hhhccc-------hHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence            75  344211       1134555553  57999999998653

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.89  E-value=1.2e-09  Score=99.58  Aligned_cols=93  Identities=18%  Similarity=0.166  Sum_probs=69.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+.+|||||||+|.++..||+..  .+++++|....+.+.+++  ....|+.++.+|....++     ..++||.|++..
T Consensus        70 ~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~-----~~~pfD~Iiv~~  142 (224)
T d1vbfa_          70 KGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-----EEKPYDRVVVWA  142 (224)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-----GGCCEEEEEESS
T ss_pred             ccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcch-----hhhhHHHHHhhc
Confidence            47899999999999999999984  589999976655554433  356799999999876422     357799999875


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .-++              ..+.+.+.|||||+|++-
T Consensus       143 a~~~--------------ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         143 TAPT--------------LLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             BBSS--------------CCHHHHHTEEEEEEEEEE
T ss_pred             chhh--------------hhHHHHHhcCCCCEEEEE
Confidence            4332              123456789999999885

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=9e-09  Score=93.00  Aligned_cols=104  Identities=16%  Similarity=0.198  Sum_probs=76.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEch----HHHHHHHHHHhCCC-cEEEEEcChhhhhhhhhc-cCCCceeE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEL----VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVA-SYPGKLIL  302 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~----~~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~-~~~~s~D~  302 (416)
                      +..+|||||||+|..++.||+..+ +.+++++|+    ...|.+.++..|+. +|+++.+|+.+.+++... ...++||.
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~  135 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  135 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence            357899999999999999999865 689999996    44556666677875 599999999987654321 13467999


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      |++   |.|+      ........+.+..+.|+|||.+++
T Consensus       136 ifi---D~~~------~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         136 VFL---DHWK------DRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             EEE---CSCG------GGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             eee---cccc------cccccHHHHHHHhCccCCCcEEEE
Confidence            977   4442      111112346677889999998765

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.88  E-value=1.6e-09  Score=101.00  Aligned_cols=95  Identities=12%  Similarity=0.087  Sum_probs=75.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ++.+|||+|||+|.+++.+|++ +.++++++|++..|    .++++.++++| ++++++|+.++.      ..+.+|.|+
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~------~~~~~D~Ii  179 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP------GENIADRIL  179 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC------CCSCEEEEE
T ss_pred             CccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc------cCCCCCEEE
Confidence            4789999999999999999987 46799999976544    45566678876 999999998762      357899999


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ++.  |.  ..        ..++..+.+.|+|||.+++.
T Consensus       180 ~~~--p~--~~--------~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         180 MGY--VV--RT--------HEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             ECC--CS--SG--------GGGHHHHHHHEEEEEEEEEE
T ss_pred             ECC--CC--ch--------HHHHHHHHhhcCCCCEEEEE
Confidence            873  31  11        26788899999999998763

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.1e-08  Score=94.65  Aligned_cols=133  Identities=11%  Similarity=0.103  Sum_probs=87.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCc-EEEEEcChhhhh-hhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITN-GYFIATNATSTF-RSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~n-v~f~~~Da~~l~-~~~~~~~~~s~D~v  303 (416)
                      ...++||||||+|...+.||++.|+++++|+|++..|    .++++.+++.+ +.+.+.+....+ +..+....++||.|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            3568999999999999999999999999999986554    45555667764 888877654432 21222235689999


Q ss_pred             EEECCCCCCCCcc-------hhhh--------------h--------hhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHH
Q 014919          304 SIQCPNPDFNRPE-------HRWR--------------M--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMK  354 (416)
Q Consensus       304 ~~~fpdpw~k~~h-------~krR--------------l--------~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~  354 (416)
                      ++|  .|++....       .+.+              +        +..+++++..+.++..|.+.+..-..+..+.+.
T Consensus       141 vsN--PPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~  218 (250)
T d2h00a1         141 MCN--PPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLK  218 (250)
T ss_dssp             EEC--CCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHH
T ss_pred             Eec--CcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHH
Confidence            998  56654210       0000              0        123456677788888888765433333455677


Q ss_pred             HHHHhCCCCc
Q 014919          355 QQFLEYGKGK  364 (416)
Q Consensus       355 ~~~~~~~~~~  364 (416)
                      +.+++.++..
T Consensus       219 ~~L~~~g~~~  228 (250)
T d2h00a1         219 EELRIQGVPK  228 (250)
T ss_dssp             HHHHHTTCSE
T ss_pred             HHHHHcCCCe
Confidence            8888887653

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.83  E-value=1.9e-09  Score=98.13  Aligned_cols=96  Identities=15%  Similarity=0.290  Sum_probs=70.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHh------CCCCeEEEEchH----HHHHHHHH-----HhCCCcEEEEEcChhhhhhhhhc
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK------RKDLNFLGLELV----THCRDSLQ-----LSGITNGYFIATNATSTFRSIVA  294 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~------~p~~~~iGvD~~----~~a~~~a~-----~~~l~nv~f~~~Da~~l~~~~~~  294 (416)
                      .+.+|||||||+|.++..||+.      ++..+++++|..    ..|.++..     ..+..|+.++++|+.+..+    
T Consensus        80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~----  155 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP----  155 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG----
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc----
Confidence            3689999999999999999876      355689999963    34444332     2356799999999987522    


Q ss_pred             cCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          295 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       295 ~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                       ..+.||.|++...-+-              .-+.+.+.|||||++++-.
T Consensus       156 -~~~~fD~Iiv~~a~~~--------------~p~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         156 -PNAPYNAIHVGAAAPD--------------TPTELINQLASGGRLIVPV  190 (223)
T ss_dssp             -GGCSEEEEEECSCBSS--------------CCHHHHHTEEEEEEEEEEE
T ss_pred             -cccceeeEEEEeechh--------------chHHHHHhcCCCcEEEEEE
Confidence             3578999998764331              1134678999999998743

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.81  E-value=3.9e-09  Score=95.54  Aligned_cols=94  Identities=17%  Similarity=0.306  Sum_probs=73.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||||||+|..+..||+.. +.+++++|.    ...|.+++++.+..|+.++++|+....+     ..+.||.|++
T Consensus        78 ~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~-----~~~pfD~Iiv  151 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP-----PKAPYDVIIV  151 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-----GGCCEEEEEE
T ss_pred             ccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCc-----ccCcceeEEe
Confidence            47899999999999999999875 367999995    5667777778899999999999987522     3678999998


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ...-+..  +            ..+.+.|+|||++++-
T Consensus       152 ~~a~~~i--p------------~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         152 TAGAPKI--P------------EPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             CSBBSSC--C------------HHHHHTEEEEEEEEEE
T ss_pred             ecccccC--C------------HHHHHhcCCCCEEEEE
Confidence            7543321  1            2345689999999874

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=8.8e-10  Score=102.68  Aligned_cols=132  Identities=12%  Similarity=0.067  Sum_probs=81.9

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh----C-C-----------------------------
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----G-I-----------------------------  275 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~----~-l-----------------------------  275 (416)
                      .+.++||||||+|.+.+..+.... .+++|+|.+..+++.+++.    . .                             
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            467999999999988765565543 3899999877666554321    1 0                             


Q ss_pred             CcEEEEEcChhhhhh-hhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH-------
Q 014919          276 TNGYFIATNATSTFR-SIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-------  347 (416)
Q Consensus       276 ~nv~f~~~Da~~l~~-~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~-------  347 (416)
                      .......+|+..--. ...+..++++|+|++.|...|....+    -....++++++++|||||.|++.+...       
T Consensus       133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~----~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~  208 (263)
T d2g72a1         133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDL----ASFQRALDHITTLLRPGGHLLLIGALEESWYLAG  208 (263)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSH----HHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET
T ss_pred             hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCH----HHHHHHHHHHHHHcCCCCEEEEecccCCcccccC
Confidence            012344455543200 00112356899999887654421111    112478999999999999998853210       


Q ss_pred             --------HHHHHHHHHHHhCCCCcee
Q 014919          348 --------EVMLRMKQQFLEYGKGKLV  366 (416)
Q Consensus       348 --------~~~~~~~~~~~~~~~~~~~  366 (416)
                              --.+++.+.|++.|+....
T Consensus       209 ~~~~~~~~~t~e~v~~~l~~aGf~v~~  235 (263)
T d2g72a1         209 EARLTVVPVSEEEVREALVRSGYKVRD  235 (263)
T ss_dssp             TEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred             CcccccCCCCHHHHHHHHHHCCCeEEE
Confidence                    0236677888888876443

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.3e-09  Score=100.09  Aligned_cols=132  Identities=13%  Similarity=0.035  Sum_probs=79.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----hCCCc----------------------------
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITN----------------------------  277 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~~l~n----------------------------  277 (416)
                      .+.+|||||||+|.++..+|... ..+++|+|++..+++.+++    .+...                            
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            35789999999999988777664 3479999986665554432    22110                            


Q ss_pred             -E-EEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH--------
Q 014919          278 -G-YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE--------  347 (416)
Q Consensus       278 -v-~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~--------  347 (416)
                       + .....+...- ....+..+++||.|++.|.-.+....+    .....++++++++|||||.+++.+-..        
T Consensus       130 ~~~~~~~~~~~~~-~~~~~~~~~~fD~i~~~~~l~~~~~~~----~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~  204 (257)
T d2a14a1         130 AVKRVLKCDVHLG-NPLAPAVLPLADCVLTLLAMECACCSL----DAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGK  204 (257)
T ss_dssp             HEEEEEECCTTSS-STTTTCCCCCEEEEEEESCHHHHCSSH----HHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETT
T ss_pred             hhhcccccccccc-cccccccCCcccEEeehhhHHHhcccH----HHHHHHHHHHHhccCCCcEEEEEEecccccceecc
Confidence             0 0111111110 000123578899999886533211111    112478999999999999999864110        


Q ss_pred             -------HHHHHHHHHHHhCCCCceee
Q 014919          348 -------EVMLRMKQQFLEYGKGKLVL  367 (416)
Q Consensus       348 -------~~~~~~~~~~~~~~~~~~~~  367 (416)
                             --.+.+.+.|+++||....+
T Consensus       205 ~~~~~~~~~~~~~~~~l~~aGf~v~~~  231 (257)
T d2a14a1         205 REFSCVALEKGEVEQAVLDAGFDIEQL  231 (257)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             ccccccCCCHHHHHHHHHHCCCEEEEE
Confidence                   01466778899999875444

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.76  E-value=1.1e-08  Score=91.18  Aligned_cols=73  Identities=15%  Similarity=0.212  Sum_probs=58.9

Q ss_pred             CCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          227 HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       227 ~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ++-.+.+|||+|||+|.+++.++...+ .+++|+|++..|++.+++ +..++.|+++|+.++        +++||.|++|
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~-N~~~~~~~~~D~~~l--------~~~fD~Vi~N  114 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKR-NCGGVNFMVADVSEI--------SGKYDTWIMN  114 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHH-HCTTSEEEECCGGGC--------CCCEEEEEEC
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHH-ccccccEEEEehhhc--------CCcceEEEeC
Confidence            333578999999999999988877643 589999998888887755 457899999998765        5789999998


Q ss_pred             CCCCC
Q 014919          307 CPNPD  311 (416)
Q Consensus       307 fpdpw  311 (416)
                        .||
T Consensus       115 --PPf  117 (197)
T d1ne2a_         115 --PPF  117 (197)
T ss_dssp             --CCC
T ss_pred             --ccc
Confidence              455

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.76  E-value=4.1e-08  Score=93.55  Aligned_cols=127  Identities=13%  Similarity=0.103  Sum_probs=94.1

Q ss_pred             CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH------h---CCCcEEEEEcChhhhhhhhhccCCCc
Q 014919          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL------S---GITNGYFIATNATSTFRSIVASYPGK  299 (416)
Q Consensus       229 ~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~------~---~l~nv~f~~~Da~~l~~~~~~~~~~s  299 (416)
                      ++..+||.||.|.|..+..+.+..|..+++.||+....++.+++      .   .-++++++.+|+.+.+.+    .+..
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~----~~~~  151 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER----TEER  151 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH----CCCC
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh----cCCc
Confidence            35789999999999999999988788899999975444433322      1   235799999999998653    3678


Q ss_pred             eeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC-----cHHHHHHHHHHHHhC
Q 014919          300 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-----IEEVMLRMKQQFLEY  360 (416)
Q Consensus       300 ~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD-----~~~~~~~~~~~~~~~  360 (416)
                      +|.|++-.+|||... ....++...+|++.+++.|+|||.+.+.+.     .......+.+.+++.
T Consensus       152 yDvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~  216 (312)
T d1uira_         152 YDVVIIDLTDPVGED-NPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA  216 (312)
T ss_dssp             EEEEEEECCCCBSTT-CGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT
T ss_pred             ccEEEEeCCCccccc-chhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHh
Confidence            999999888987432 233457778999999999999999988642     223445555666654

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3.5e-08  Score=89.34  Aligned_cols=102  Identities=17%  Similarity=0.134  Sum_probs=80.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEch----HHHHHHHHHHhCCCc-EEEEEcChhhhhhhhhcc-CCCceeE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEL----VTHCRDSLQLSGITN-GYFIATNATSTFRSIVAS-YPGKLIL  302 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~----~~~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~-~~~s~D~  302 (416)
                      +..+|||||||+|..++.+|+..| +.+++.+|.    ...|++..++.++.+ ++++.+|+.+.+++.+.. .+++||.
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~  138 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV  138 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence            468999999999999999999876 789999995    455666677778764 999999998876554321 3568999


Q ss_pred             EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      |++.   .+      |.  .+...++.+.+.|+|||.+++
T Consensus       139 ifiD---~d------k~--~y~~~~~~~~~lL~~GGvii~  167 (219)
T d2avda1         139 AVVD---AD------KE--NCSAYYERCLQLLRPGGILAV  167 (219)
T ss_dssp             EEEC---SC------ST--THHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEe---CC------HH--HHHHHHHHHHHHhcCCcEEEE
Confidence            9884   32      11  135788999999999999988

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=4.3e-08  Score=86.98  Aligned_cols=116  Identities=9%  Similarity=0.099  Sum_probs=82.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--C-CCcEEEEEcChhhhhhhhh-ccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--G-ITNGYFIATNATSTFRSIV-ASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~-l~nv~f~~~Da~~l~~~~~-~~~~~s~D~v~~  305 (416)
                      .+..+||++||+|.++..+++++|+.+++|+|....|++.+++.  . -.++.+++++..++ ...+ ....++||.|.+
T Consensus        23 ~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~-~~~~~~~~~~~vdgIl~  101 (192)
T d1m6ya2          23 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREA-DFLLKTLGIEKVDGILM  101 (192)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGH-HHHHHHTTCSCEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhH-HHHHHHcCCCCcceeee
Confidence            46899999999999999999999999999999877766665542  1 25799999998876 2221 123578999987


Q ss_pred             ECCCCCCCCcchhhhh-hhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          306 QCPNPDFNRPEHRWRM-VQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl-~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      .+.-.-+.-....|.+ .....|....++|+|||.+.+.+-+
T Consensus       102 DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~  143 (192)
T d1m6ya2         102 DLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH  143 (192)
T ss_dssp             ECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred             ccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence            7532100000011111 1358899999999999999887644

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.70  E-value=2.3e-08  Score=93.44  Aligned_cols=124  Identities=11%  Similarity=0.127  Sum_probs=82.4

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ..+++|+|||+|..++.+|+ +|+++++|+|++..|+    ++++++++.| +.+..+|..+.+..    ..+.||.|+.
T Consensus       111 ~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~----~~~~fDlIVs  185 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE----KFASIEMILS  185 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG----GTTTCCEEEE
T ss_pred             ccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccccc----ccCcccEEEE
Confidence            57899999999999999885 6999999999866554    4555667765 77888887765321    2478999999


Q ss_pred             ECCCCCCCCc--------ch-hhhhhh----HHHH-HHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCC
Q 014919          306 QCPNPDFNRP--------EH-RWRMVQ----RSLV-EAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK  362 (416)
Q Consensus       306 ~fpdpw~k~~--------h~-krRl~~----~~~l-~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~  362 (416)
                      |  .|+.+..        |. +.-+.-    -.++ +-+.+.|+|||.+++..+. +..+.+.+.+.+.++
T Consensus       186 N--PPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~-~Q~~~v~~l~~~~g~  253 (271)
T d1nv8a_         186 N--PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE-DQVEELKKIVSDTVF  253 (271)
T ss_dssp             C--CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT-TCHHHHTTTSTTCEE
T ss_pred             c--ccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH-HHHHHHHHHHHhCCE
Confidence            8  4443221        10 100110    0122 2256789999999998764 345555555555543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.68  E-value=7.3e-08  Score=87.65  Aligned_cols=102  Identities=16%  Similarity=0.169  Sum_probs=81.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEch----HHHHHHHHHHhCCC-cEEEEEcChhhhhhhhhcc--CCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEL----VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVAS--YPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~----~~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~--~~~s~D  301 (416)
                      +..+||||||++|..++.||+..| +.+++.+|.    ...|++..++.|+. +++++.+|+.+.+++....  ..++||
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD  138 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  138 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence            468999999999999999999876 689999996    45566777777876 4999999999887654321  246899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                      .||+   |.|.  .      -++.+++.+.+.|+|||.+++
T Consensus       139 ~iFi---Da~k--~------~y~~~~e~~~~ll~~gGiii~  168 (227)
T d1susa1         139 FIFV---DADK--D------NYLNYHKRLIDLVKVGGVIGY  168 (227)
T ss_dssp             EEEE---CSCS--T------THHHHHHHHHHHBCTTCCEEE
T ss_pred             EEEe---ccch--h------hhHHHHHHHHhhcCCCcEEEE
Confidence            9987   5542  1      135889999999999999987

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.68  E-value=6.9e-08  Score=83.91  Aligned_cols=102  Identities=15%  Similarity=0.142  Sum_probs=66.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+.+|||+|||+|.++++.+.+  .++++++|.+..+    .++++..++.+ ++...++..++... .....+||.|++
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~~~-~~~~~~fD~If~  116 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEA-KAQGERFTVAFM  116 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHH-HHTTCCEEEEEE
T ss_pred             CCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhcccccc-cccCCccceeEE
Confidence            4689999999999999988876  4689999975544    44555667653 45555655432211 114578999987


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHH--HhhccCCcEEEEEeC
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAV--SDLLVHDGKVFLQSD  345 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i--~r~LkpgG~l~l~tD  345 (416)
                      +  .||.+. ..       ..+..+  ..+|+|||.+++.++
T Consensus       117 D--PPY~~~-~~-------~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         117 A--PPYAMD-LA-------ALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             C--CCTTSC-TT-------HHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             c--cccccC-HH-------HHHHHHHHcCCcCCCeEEEEEec
Confidence            5  344322 11       222222  357999999998654

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=5.5e-08  Score=85.49  Aligned_cols=132  Identities=14%  Similarity=0.167  Sum_probs=84.2

Q ss_pred             ceEeeeeccc-CCCCcccccccCccccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HH
Q 014919          195 SAVWEFLKGR-MLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DS  269 (416)
Q Consensus       195 Ga~le~l~gr-~lPg~~aL~~~~p~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~  269 (416)
                      |-.+....+. .+|..+...+.+   .+|....-  ++.++||++||+|.++++.+.+.. ..++.||.+..|.    ++
T Consensus        12 g~~l~~~~~~~~RPt~~~vre~l---fn~l~~~~--~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N   85 (183)
T d2fpoa1          12 GRKLPVPDSPGLRPTTDRVRETL---FNWLAPVI--VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKN   85 (183)
T ss_dssp             TCEEECCCC------CHHHHHHH---HHHHHHHH--TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHH
T ss_pred             CCEecCCCCCCcCcCcHHHHHHH---Hhhhhccc--chhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHH
Confidence            4455555543 555543333322   12222111  367899999999999999888754 4899999755444    44


Q ss_pred             HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHh--hccCCcEEEEEeC
Q 014919          270 LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSD  345 (416)
Q Consensus       270 a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r--~LkpgG~l~l~tD  345 (416)
                      ++..+..|++++++|+..++..    ....||.|++.  .||....       .+..++.+.+  +|+++|.+++.++
T Consensus        86 ~~~~~~~~~~ii~~d~~~~l~~----~~~~fDlIf~D--PPY~~~~-------~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1          86 LATLKAGNARVVNSNAMSFLAQ----KGTPHNIVFVD--PPFRRGL-------LEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             HHHTTCCSEEEECSCHHHHHSS----CCCCEEEEEEC--CSSSTTT-------HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             Hhhccccceeeeeecccccccc----cccccCEEEEc--Cccccch-------HHHHHHHHHHCCCCCCCeEEEEEec
Confidence            5556788999999999887532    35789999885  3443221       2355666654  6999999999764

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.66  E-value=6.2e-08  Score=91.90  Aligned_cols=110  Identities=11%  Similarity=0.106  Sum_probs=76.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCC--cEEEEEcChhhhhhhhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~--nv~f~~~Da~~l~~~~~~~~~~s~D~v  303 (416)
                      .+.+|||+.||+|.+++.+|..  .+++++||.+..|++    +++.+++.  +++|+++|+..++..... ....||.|
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~-~~~~fD~I  208 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREER-RGSTYDII  208 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH-HTCCBSEE
T ss_pred             CCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhh-cCCCCCEE
Confidence            4679999999999999998876  568999997665544    44556765  599999999987654321 35789999


Q ss_pred             EEECCCCCC-CC-cchhh--hhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          304 SIQCPNPDF-NR-PEHRW--RMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       304 ~~~fpdpw~-k~-~h~kr--Rl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ++.  .|.+ +. .+...  +-....+++.+.++|+|||.+++.|
T Consensus       209 ilD--PP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         209 LTD--PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             EEC--CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             EEC--CCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            885  2222 11 11111  1123567788899999999766654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=2.9e-08  Score=97.70  Aligned_cols=100  Identities=15%  Similarity=0.150  Sum_probs=64.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHh-------C--CCcEEE-EEcChhhh--hhhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLS-------G--ITNGYF-IATNATST--FRSIV  293 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~-------~--l~nv~f-~~~Da~~l--~~~~~  293 (416)
                      .+.++||||||+|..++.+|+.+|..+++|||++..+.+    ++++.       +  ..++.+ ..++....  .+..+
T Consensus       216 pgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~  295 (406)
T d1u2za_         216 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELI  295 (406)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHG
T ss_pred             CCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccccc
Confidence            478999999999999999999999889999997544433    33221       1  223333 33443322  11112


Q ss_pred             ccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919          294 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL  342 (416)
Q Consensus       294 ~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l  342 (416)
                          ...|+|+++.- .+  ...      ....|.++.+.|||||+|+.
T Consensus       296 ----~~adVV~inn~-~f--~~~------l~~~L~ei~r~LKPGGrIVs  331 (406)
T d1u2za_         296 ----PQCDVILVNNF-LF--DED------LNKKVEKILQTAKVGCKIIS  331 (406)
T ss_dssp             ----GGCSEEEECCT-TC--CHH------HHHHHHHHHTTCCTTCEEEE
T ss_pred             ----ccceEEEEecc-cC--chH------HHHHHHHHHHhcCCCcEEEE
Confidence                35778887521 11  111      13778999999999999875

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.61  E-value=1.2e-07  Score=84.60  Aligned_cols=119  Identities=15%  Similarity=0.114  Sum_probs=73.3

Q ss_pred             cCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----hCCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          226 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       226 f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~~l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      .+.-++..|||+|||+|.+++.++.+. ..+++|+|++..+++.+++    .+ .+..++++|+..+        ++.||
T Consensus        42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~-~~~~~~~~d~~~~--------~~~fD  111 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFK-GKFKVFIGDVSEF--------NSRVD  111 (201)
T ss_dssp             TTSSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGT-TSEEEEESCGGGC--------CCCCS
T ss_pred             cCCCCCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcC-CCceEEECchhhh--------CCcCc
Confidence            333357899999999999999887763 4689999987666555443    34 3588999998764        56799


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe-CcHHHHHHHHHHHHhCCCC
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t-D~~~~~~~~~~~~~~~~~~  363 (416)
                      .|+++  .||.....    .....++..   .+.+++.++... ........+......+++.
T Consensus       112 ~Vi~n--PP~~~~~~----~~d~~~l~~---~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~  165 (201)
T d1wy7a1         112 IVIMN--PPFGSQRK----HADRPFLLK---AFEISDVVYSIHLAKPEVRRFIEKFSWEHGFV  165 (201)
T ss_dssp             EEEEC--CCCSSSST----TTTHHHHHH---HHHHCSEEEEEEECCHHHHHHHHHHHHHTTEE
T ss_pred             EEEEc--Cccccccc----cccHHHHHH---HHhhcccchhcccchHHHHHHHHHHHhhcCce
Confidence            99987  45532211    122345443   344455554432 2222333344445566654

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.53  E-value=1.7e-07  Score=82.19  Aligned_cols=105  Identities=14%  Similarity=0.152  Sum_probs=74.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      ++.+|||+.||+|.++++.+.+.. ..++.||.+..+.    ++++..+.. |++++++|+..++..... ....||.|+
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~-~~~~fDlIf  118 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE-EKLQFDLVL  118 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcc-cCCCcceEE
Confidence            468999999999999999888753 4899999755444    444445554 799999999987654321 356899998


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHH--hhccCCcEEEEEeC
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSD  345 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~--r~LkpgG~l~l~tD  345 (416)
                      +.  .||. ...      ....++.+.  .+|+|+|.+++.++
T Consensus       119 lD--PPY~-~~~------~~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         119 LD--PPYA-KQE------IVSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             EC--CCGG-GCC------HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             ec--hhhh-hhH------HHHHHHHHHHCCCCCCCEEEEEEcC
Confidence            74  3432 111      135666665  46999999998764

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.52  E-value=1e-07  Score=87.53  Aligned_cols=96  Identities=15%  Similarity=0.150  Sum_probs=70.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      ...+|||||||+|.++..+++++|+.+++..|+-.. ++  .....++++++.+|..+-    +   + ..|.+++...-
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~--~~~~~~ri~~~~gd~~~~----~---p-~~D~~~l~~vL  149 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQV-IE--NAPPLSGIEHVGGDMFAS----V---P-QGDAMILKAVC  149 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH-HT--TCCCCTTEEEEECCTTTC----C---C-CEEEEEEESSG
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhh-hh--ccCCCCCeEEecCCcccc----c---c-cceEEEEehhh
Confidence            468999999999999999999999999999997332 22  123357899999997542    1   2 34888776322


Q ss_pred             C-CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          310 P-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       310 p-w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      . |+   ..    ....+|+.+++.|+|||++++.
T Consensus       150 h~~~---de----~~~~iL~~~~~aL~pgg~llI~  177 (244)
T d1fp1d2         150 HNWS---DE----KCIEFLSNCHKALSPNGKVIIV  177 (244)
T ss_dssp             GGSC---HH----HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhCC---HH----HHHHHHHHHHHHcCCCcEEEEE
Confidence            1 21   11    1237899999999999999885

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.50  E-value=3.8e-07  Score=85.16  Aligned_cols=122  Identities=11%  Similarity=0.081  Sum_probs=88.1

Q ss_pred             CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--------------hCCCcEEEEEcChhhhhhhhhc
Q 014919          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--------------SGITNGYFIATNATSTFRSIVA  294 (416)
Q Consensus       229 ~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--------------~~l~nv~f~~~Da~~l~~~~~~  294 (416)
                      ++...||-||+|.|..+..+.+ +|..+++.||+.....+.+++              ..-++++++.+|+..++.+   
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~---  146 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN---  146 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH---
T ss_pred             CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc---
Confidence            3578999999999999988876 566789999975544444332              1235799999999988642   


Q ss_pred             cCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhC
Q 014919          295 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  360 (416)
Q Consensus       295 ~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~  360 (416)
                        ++++|+|++..++|+..    -.++...+|++.+.+.|+|||.+.+.+.+    ...+..+.+.+++.
T Consensus       147 --~~~yDvIi~D~~~~~~~----~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~  210 (276)
T d1mjfa_         147 --NRGFDVIIADSTDPVGP----AKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV  210 (276)
T ss_dssp             --CCCEEEEEEECCCCC---------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH
T ss_pred             --cCCCCEEEEeCCCCCCC----cccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhh
Confidence              57899999988888522    13467789999999999999999987533    23344455555554

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.49  E-value=3.7e-07  Score=86.02  Aligned_cols=125  Identities=14%  Similarity=0.146  Sum_probs=88.2

Q ss_pred             CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH------h--CCCcEEEEEcChhhhhhhhhccCCCce
Q 014919          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL------S--GITNGYFIATNATSTFRSIVASYPGKL  300 (416)
Q Consensus       229 ~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~------~--~l~nv~f~~~Da~~l~~~~~~~~~~s~  300 (416)
                      ++..+||-||.|.|..+..+++..|..+++.||+.....+.+++      .  .-++++++.+|+...+.+    .++.+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~----~~~~y  163 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK----FKNEF  163 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG----CSSCE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhc----CCCCC
Confidence            35789999999999999999987778899999974443333221      1  235799999999998653    36789


Q ss_pred             eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhC
Q 014919          301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  360 (416)
Q Consensus       301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~  360 (416)
                      |.|++-.+||+...   -.++...+|++.+++.|+|||.+.+.+..    ...+..+.+.+.+.
T Consensus       164 DvIi~D~~dp~~~~---~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~v  224 (295)
T d1inla_         164 DVIIIDSTDPTAGQ---GGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV  224 (295)
T ss_dssp             EEEEEEC-------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCcCc---hhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhh
Confidence            99999988886322   12466789999999999999999998754    33344555555554

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.35  E-value=2.3e-06  Score=80.23  Aligned_cols=126  Identities=16%  Similarity=0.144  Sum_probs=95.2

Q ss_pred             CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--------hCCCcEEEEEcChhhhhhhhhccCCCce
Q 014919          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--------SGITNGYFIATNATSTFRSIVASYPGKL  300 (416)
Q Consensus       229 ~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--------~~l~nv~f~~~Da~~l~~~~~~~~~~s~  300 (416)
                      ++..+||=||-|.|..+..+.+..|..+++.||+....++.+++        ..-++++++.+|+...+.+.   .++++
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~---~~~~y  155 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA---AEGSY  155 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS---CTTCE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhc---cccCc
Confidence            35689999999999999999987777799999975444333322        12367999999999886431   35689


Q ss_pred             eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhCC
Q 014919          301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYG  361 (416)
Q Consensus       301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~~  361 (416)
                      |.|++..+||+.    .-.++...+|++.+++.|+|||.+.+.+..    .+.+..+.+.+.+..
T Consensus       156 DvIi~D~~dp~~----~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF  216 (290)
T d1xj5a_         156 DAVIVDSSDPIG----PAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIF  216 (290)
T ss_dssp             EEEEECCCCTTS----GGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHC
T ss_pred             cEEEEcCCCCCC----cchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhc
Confidence            999998888862    123577889999999999999999998643    455566666666653

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=1.8e-06  Score=82.90  Aligned_cols=122  Identities=18%  Similarity=0.220  Sum_probs=87.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      ....+||+-||.|.+++.||++.  .+++|+|.+    ..|.++++.++++|+.|+++|+.+.+... +.....+|.|++
T Consensus       212 ~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~-~~~~~~~d~vil  288 (358)
T d1uwva2         212 PEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ-PWAKNGFDKVLL  288 (358)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS-GGGTTCCSEEEE
T ss_pred             CCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhh-hhhhccCceEEe
Confidence            36789999999999999999874  589999974    44566667789999999999998754321 113467898876


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL  367 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~  367 (416)
                         ||- ...-       .+.++.+.+. +|.-.+|++.|...+++.+. .|.+.++.+..+
T Consensus       289 ---DPP-R~G~-------~~~~~~l~~~-~~~~ivYVSCnp~TlaRDl~-~l~~~gy~l~~i  337 (358)
T d1uwva2         289 ---DPA-RAGA-------AGVMQQIIKL-EPIRIVYVSCNPATLARDSE-ALLKAGYTIARL  337 (358)
T ss_dssp             ---CCC-TTCC-------HHHHHHHHHH-CCSEEEEEESCHHHHHHHHH-HHHHTTCEEEEE
T ss_pred             ---CCC-CccH-------HHHHHHHHHc-CCCEEEEEeCCHHHHHHHHH-HHHHCCCeEeEE
Confidence               552 2221       1456666554 78889999998888777655 455667765544

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.32  E-value=1.6e-06  Score=80.70  Aligned_cols=123  Identities=10%  Similarity=0.108  Sum_probs=93.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--------hCCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--------SGITNGYFIATNATSTFRSIVASYPGKLI  301 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--------~~l~nv~f~~~Da~~l~~~~~~~~~~s~D  301 (416)
                      +...||-||-|.|..+..+.+..|..+++.||+.....+.+++        ..-++++++.+|+...+..    .++++|
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~----~~~~yD  150 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK----SENQYD  150 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT----CCSCEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhh----cCCCCC
Confidence            5689999999999999999987777899999974443333221        1235799999999988653    367899


Q ss_pred             EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhC
Q 014919          302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  360 (416)
Q Consensus       302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~  360 (416)
                      +|++-.+||+-...    .+...+|++.+.++|+|||.+...+..    ...+..+.+.+++.
T Consensus       151 vIi~D~~~p~~~~~----~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~  209 (274)
T d1iy9a_         151 VIMVDSTEPVGPAV----NLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI  209 (274)
T ss_dssp             EEEESCSSCCSCCC----CCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCCcch----hhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhh
Confidence            99998888873222    366789999999999999999998643    34455566666664

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.32  E-value=1.3e-06  Score=82.77  Aligned_cols=124  Identities=14%  Similarity=0.097  Sum_probs=86.5

Q ss_pred             CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--------CCCcEEEEEcChhhhhhhhhccCCCce
Q 014919          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKL  300 (416)
Q Consensus       229 ~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--------~l~nv~f~~~Da~~l~~~~~~~~~~s~  300 (416)
                      ++..+||-||-|.|..+..+.+..|-.+++.||+.....+.+++.        .-++++++.+|+...+.+    ...++
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~----~~~~y  180 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN----HKNEF  180 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH----CTTCE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh----CCCCC
Confidence            357889999999999999999877778999999755544444321        125799999999998753    46789


Q ss_pred             eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhC
Q 014919          301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  360 (416)
Q Consensus       301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~  360 (416)
                      |+|++..+||...    -.++...+|++.+++.|+|||.+..++..    .+.+..+.+.+++.
T Consensus       181 DvII~D~~dp~~~----~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v  240 (312)
T d2b2ca1         181 DVIITDSSDPVGP----AESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI  240 (312)
T ss_dssp             EEEEECCC-----------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCCc----chhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhc
Confidence            9999988887522    23477789999999999999999998644    33455566666553

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=9.7e-07  Score=78.85  Aligned_cols=96  Identities=14%  Similarity=0.097  Sum_probs=75.5

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH---HHH-HHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH---CRD-SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~---a~~-~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ...++|||||.|.-++.+|-.+|+.+++.+|.+.+   .++ -+.+.+++|+++++..++++     . ...+||.|++-
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~-----~-~~~~fD~V~sR  139 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF-----P-SEPPFDGVISR  139 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS-----C-CCSCEEEEECS
T ss_pred             CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhh-----c-cccccceehhh
Confidence            46899999999999999999999999999996432   222 24467899999999999886     1 35689999764


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ---|            -+.+++.....++++|.+++--
T Consensus       140 A~~~------------~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         140 AFAS------------LNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             CSSS------------HHHHHHHHTTSEEEEEEEEEEE
T ss_pred             hhcC------------HHHHHHHHHHhcCCCcEEEEEC
Confidence            2222            1478899999999999988754

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.5e-06  Score=81.47  Aligned_cols=124  Identities=13%  Similarity=0.129  Sum_probs=86.4

Q ss_pred             CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--------hCCCcEEEEEcChhhhhhhhhccCCCce
Q 014919          229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--------SGITNGYFIATNATSTFRSIVASYPGKL  300 (416)
Q Consensus       229 ~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--------~~l~nv~f~~~Da~~l~~~~~~~~~~s~  300 (416)
                      ++..+||=||-|.|..+..+.+..+..+++.+|+.....+.+++        ..-++++++.+|+...+.+    .++++
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~----~~~~y  152 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ----NQDAF  152 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT----CSSCE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhc----CCCCC
Confidence            35789999999999999999887778899999974443333321        1236799999999998653    35789


Q ss_pred             eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhC
Q 014919          301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY  360 (416)
Q Consensus       301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~  360 (416)
                      |+|++-.++|....    ..+.+.+|++.+++.|+|||.+.+++..    ...+..+.+.+++.
T Consensus       153 DvIi~D~~~p~~~~----~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~  212 (285)
T d2o07a1         153 DVIITDSSDPMGPA----ESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL  212 (285)
T ss_dssp             EEEEEECC---------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCCcc----cccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhc
Confidence            99999888876322    2466779999999999999999987532    33445555566553

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.30  E-value=7e-07  Score=81.84  Aligned_cols=95  Identities=16%  Similarity=0.156  Sum_probs=68.6

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      ...|||||||+|.++..+++++|+.+++..|+-. .++.  ....++++|+.+|+.+-        ....|++++...-.
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~--~~~~~rv~~~~gD~f~~--------~p~aD~~~l~~vLH  149 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-VVEN--LSGSNNLTYVGGDMFTS--------IPNADAVLLKYILH  149 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHTT--CCCBTTEEEEECCTTTC--------CCCCSEEEEESCGG
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-HHHh--CcccCceEEEecCcccC--------CCCCcEEEEEeecc
Confidence            5789999999999999999999999999999732 2221  12346899999998542        12468887763321


Q ss_pred             -CCCCcchhhhhhhHHHHHHHHhhccCC---cEEEEE
Q 014919          311 -DFNRPEHRWRMVQRSLVEAVSDLLVHD---GKVFLQ  343 (416)
Q Consensus       311 -w~k~~h~krRl~~~~~l~~i~r~Lkpg---G~l~l~  343 (416)
                       |. +.      ....+|+.+++.|+||   |++.+.
T Consensus       150 dw~-d~------~~~~iL~~~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         150 NWT-DK------DCLRILKKCKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             GSC-HH------HHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             cCC-hH------HHHHHHHHHHHHcCcccCCcEEEEE
Confidence             21 10      1237899999999999   666664

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.24  E-value=5.2e-07  Score=82.57  Aligned_cols=95  Identities=13%  Similarity=0.163  Sum_probs=65.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC-CC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC-PN  309 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f-pd  309 (416)
                      ..+|||||||+|.++..+++++|+.++++.|+-.. ++  ......+++++.+|..+-    +|  ..  |.+++.. --
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~--~~~~~~r~~~~~~d~~~~----~P--~a--d~~~l~~vlh  150 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE--DAPSYPGVEHVGGDMFVS----IP--KA--DAVFMKWICH  150 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT--TCCCCTTEEEEECCTTTC----CC--CC--SCEECSSSST
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh--hcccCCceEEeccccccc----CC--Cc--ceEEEEEEee
Confidence            57899999999999999999999999999996221 11  112346799999998542    22  22  3333221 11


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      -|.   ..    ....+|+++++.|+|||++.+.
T Consensus       151 ~~~---d~----~~~~iL~~~~~al~pgg~~li~  177 (243)
T d1kyza2         151 DWS---DE----HCLKFLKNCYEALPDNGKVIVA  177 (243)
T ss_dssp             TSC---HH----HHHHHHHHHHHHCCSSSCEEEE
T ss_pred             cCC---HH----HHHHHHHHHHHhcCCCceEEEE
Confidence            221   11    1237899999999999998885

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.08  E-value=2.3e-05  Score=71.07  Aligned_cols=120  Identities=15%  Similarity=0.108  Sum_probs=85.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH---HHHH-HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH---CRDS-LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~---a~~~-a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ...++|||+|.|.-++.||-.+|+.+++-+|.+.+   .++. ..+.+++|+.++++.++++... . ...++||.|+.-
T Consensus        71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~-~-~~~~~~D~v~sR  148 (239)
T d1xdza_          71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-K-DVRESYDIVTAR  148 (239)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-T-TTTTCEEEEEEE
T ss_pred             CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhcccc-c-cccccceEEEEh
Confidence            57899999999999999999999999999996432   2222 3467999999999999886211 0 024689999876


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe--CcHHHHHHHHHHHHhCCCCc
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS--DIEEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t--D~~~~~~~~~~~~~~~~~~~  364 (416)
                      -.-+.            +.+++.....|++||.+++--  ++.+=.+...+.+...++..
T Consensus       149 Ava~l------------~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~  196 (239)
T d1xdza_         149 AVARL------------SVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGEL  196 (239)
T ss_dssp             CCSCH------------HHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEE
T ss_pred             hhhCH------------HHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEE
Confidence            32221            488999999999999988742  33333444455666666543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.03  E-value=7.1e-06  Score=74.52  Aligned_cols=72  Identities=14%  Similarity=0.115  Sum_probs=54.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      ++..|||||||+|.++..|++.  ..++++||+.....+.+++  .+.+|++++++|+..+     +.+......|+.|.
T Consensus        21 ~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~-----~~~~~~~~~vv~NL   93 (235)
T d1qama_          21 EHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQF-----KFPKNQSYKIFGNI   93 (235)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGC-----CCCSSCCCEEEEEC
T ss_pred             CCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhc-----cccccccceeeeee
Confidence            4789999999999999999987  4589999986655555443  2457999999999886     22333334577885


Q ss_pred             C
Q 014919          308 P  308 (416)
Q Consensus       308 p  308 (416)
                      |
T Consensus        94 P   94 (235)
T d1qama_          94 P   94 (235)
T ss_dssp             C
T ss_pred             h
Confidence            4

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.00  E-value=4.2e-06  Score=74.18  Aligned_cols=118  Identities=14%  Similarity=0.024  Sum_probs=78.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCC-CeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+.+|||.|||+|.++..+.++++. .+++|+|+.+.+.+     ...+..++++|....     + ....+|.+..+. 
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~-----~~~~~~~~~~~~~~~-----~-~~~~fd~ii~np-   86 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD-----LPPWAEGILADFLLW-----E-PGEAFDLILGNP-   86 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC-----CCTTEEEEESCGGGC-----C-CSSCEEEEEECC-
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh-----hcccceeeeeehhcc-----c-cccccceecccC-
Confidence            4679999999999999999877654 67999998654322     123467788887654     1 357899999883 


Q ss_pred             CCCCCCcch-----------------------hhhhhhHHHHHHHHhhccCCcEEEEEeCcHH----HHHHHHHHHHhC
Q 014919          309 NPDFNRPEH-----------------------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE----VMLRMKQQFLEY  360 (416)
Q Consensus       309 dpw~k~~h~-----------------------krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~----~~~~~~~~~~~~  360 (416)
                       ||....+.                       .+.-.+..|++...+.|+|||++.+.+....    +.+.+++.+.+.
T Consensus        87 -P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~  164 (223)
T d2ih2a1          87 -PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLARE  164 (223)
T ss_dssp             -CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHH
T ss_pred             -ccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhc
Confidence             33211000                       0011245788999999999999888754322    345556655554

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.93  E-value=5.1e-06  Score=73.08  Aligned_cols=103  Identities=15%  Similarity=0.134  Sum_probs=64.5

Q ss_pred             CCeEEEEeccccHHHHHHHHh--------CCCCeEEEEchHHHHHHHHHHh--------CC-------------------
Q 014919          231 QPLVVDIGSGNGLFLLGMARK--------RKDLNFLGLELVTHCRDSLQLS--------GI-------------------  275 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~--------~p~~~~iGvD~~~~a~~~a~~~--------~l-------------------  275 (416)
                      .-+|+++|||+|.-...||..        ..+.+++|.|++..++++|++.        +.                   
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~  104 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  104 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence            458999999999965555432        1245799999987777766421        00                   


Q ss_pred             --------CcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          276 --------TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       276 --------~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                              ..+++...+....   . +...+.+|+|++-+.--++...      .+.+.++.+++.|+|||.|++-
T Consensus       105 ~~~~~~~~~~v~~~~~~~~~~---~-~~~~~~fDvI~CRNVLiYf~~~------~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         105 VRVRQELANYVEFSSVNLLEK---Q-YNVPGPFDAIFCRNVMIYFDKT------TQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEECHHHHTTEEEEECCTTCS---S-CCCCCCEEEEEECSSGGGSCHH------HHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eehHHHHHHHHHHhhhhcccc---c-cCCCCCccEEEeehhHHhcCHH------HHHHHHHHHHHHhCCCcEEEEe
Confidence                    0123333333221   0 1134789999876543333221      2348899999999999999884

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.91  E-value=2.6e-05  Score=67.76  Aligned_cols=134  Identities=13%  Similarity=0.219  Sum_probs=79.2

Q ss_pred             ceEeeeecc-cCCCCcccccccCccccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----H
Q 014919          195 SAVWEFLKG-RMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----S  269 (416)
Q Consensus       195 Ga~le~l~g-r~lPg~~aL~~~~p~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~  269 (416)
                      |-.+....+ ..+|..+.+.+..   -+|.+..-  ++.++||+-||+|.++++.+.+. ...++.||....+.+    +
T Consensus        12 g~~l~~~~~~~~RPt~~~vreal---Fn~l~~~~--~~~~vLDlFaGsG~~glEalSRG-A~~v~fVE~~~~a~~~ik~N   85 (183)
T d2ifta1          12 GRKLPVLNSEGLRPTGDRVKETL---FNWLMPYI--HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKN   85 (183)
T ss_dssp             TCEEECC---------CHHHHHH---HHHHHHHH--TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHH
T ss_pred             CCEecCCCCCCcCcCcHHHHHHH---HHHhhhhc--ccceEeecccCccceeeeeeeec-ceeeEEeecccchhhhHhhH
Confidence            445555544 3555554443332   12222111  36789999999999999999885 448999997555543    3


Q ss_pred             HHHhCCC--cEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHh--hccCCcEEEEEeC
Q 014919          270 LQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSD  345 (416)
Q Consensus       270 a~~~~l~--nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r--~LkpgG~l~l~tD  345 (416)
                      ++..+..  +..+.+.|+...+....  ....||.|++   ||-+...      .....++.+..  +|+++|.+++.++
T Consensus        86 i~~l~~~~~~~~~~~~d~~~~l~~~~--~~~~fDlIFl---DPPY~~~------~~~~~l~~l~~~~~L~~~~liiiE~~  154 (183)
T d2ifta1          86 LQTLKCSSEQAEVINQSSLDFLKQPQ--NQPHFDVVFL---DPPFHFN------LAEQAISLLCENNWLKPNALIYVETE  154 (183)
T ss_dssp             HHHTTCCTTTEEEECSCHHHHTTSCC--SSCCEEEEEE---CCCSSSC------HHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             Hhhhcccccccccccccccccccccc--cCCcccEEEe---chhHhhh------hHHHHHHHHHHhCCcCCCcEEEEEec
Confidence            4445554  47788888877643211  3457999977   4433221      12356666654  7999999999764

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.90  E-value=5.3e-05  Score=65.88  Aligned_cols=129  Identities=12%  Similarity=0.065  Sum_probs=88.6

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhc-cCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~-~~~~s~D~v~~~fp  308 (416)
                      .+.+++|..||.|.++..+.++  +.+++|+|....|++.++....+++.+++.+..++ .+.++ ...+.+|.|++.+.
T Consensus        18 ~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~-~~~l~~~~~~~vdgIl~DLG   94 (182)
T d1wg8a2          18 PGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHL-KRHLAALGVERVDGILADLG   94 (182)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGH-HHHHHHTTCSCEEEEEEECS
T ss_pred             CCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHH-HHHHHHcCCCccCEEEEEcc
Confidence            4789999999999999999987  46999999988888877766667999999999887 43332 13467999987642


Q ss_pred             CCCCCCcchhhhhh--hHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCC
Q 014919          309 NPDFNRPEHRWRMV--QRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK  362 (416)
Q Consensus       309 dpw~k~~h~krRl~--~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~  362 (416)
                      -.-+. .+...|-+  ....|+.....|+|||.+.+.+-+..--+...+.+++..+
T Consensus        95 vSs~q-ld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~  149 (182)
T d1wg8a2          95 VSSFH-LDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGL  149 (182)
T ss_dssp             CCHHH-HHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCS
T ss_pred             CCHHH-hhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccc
Confidence            11000 00001111  2357899999999999999877543222234445555443

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.86  E-value=2.7e-05  Score=73.64  Aligned_cols=122  Identities=10%  Similarity=0.088  Sum_probs=79.0

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-----CCCCeEEEEchHHHHHHHH----HHhCCCcEEEEEcChhhhhhhhhccCCCce
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-----RKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKL  300 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-----~p~~~~iGvD~~~~a~~~a----~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~  300 (416)
                      ++..|||.+||+|.++..+.++     .++.+++|+|+...+.+.+    ...+ .+..+.++|....    .  ....|
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~-~~~~~~~~d~~~~----~--~~~~f  189 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-QKMTLLHQDGLAN----L--LVDPV  189 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-CCCEEEESCTTSC----C--CCCCE
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh-hhhhhhccccccc----c--ccccc
Confidence            3578999999999999988754     3566899999755544433    2333 3456677776543    1  35789


Q ss_pred             eEEEEECCCCCCCCcch------------hhhhhhHHHHHHHHhhccCCcEEEEEeCcH----HHHHHHHHHHHhC
Q 014919          301 ILVSIQCPNPDFNRPEH------------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEY  360 (416)
Q Consensus       301 D~v~~~fpdpw~k~~h~------------krRl~~~~~l~~i~r~LkpgG~l~l~tD~~----~~~~~~~~~~~~~  360 (416)
                      |.|..|  .|+......            .+.-.+..|++.+.+.|+|||++.+.+...    .....+++.+.++
T Consensus       190 D~vi~N--PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~  263 (328)
T d2f8la1         190 DVVISD--LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKN  263 (328)
T ss_dssp             EEEEEE--CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHH
T ss_pred             cccccC--CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhC
Confidence            999999  444211000            001123468999999999999987765432    2345566666554

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=0.00013  Score=67.63  Aligned_cols=111  Identities=11%  Similarity=0.219  Sum_probs=80.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..|||+++|.|.=+..||+...+..++++|.    +....+++++.|++|+.....|.... . ..  ..+.||.|.+
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~-~-~~--~~~~fd~IL~  177 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPS-Q-WC--GEQQFDRILL  177 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTH-H-HH--TTCCEEEEEE
T ss_pred             ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccc-h-hc--ccccccEEEE
Confidence            478999999999999999999888889999996    45566667788998887776665433 2 11  3578999988


Q ss_pred             ECCCC----CCCCcchhh--------hh--hhHHHHHHHHhhccCCcEEEEEe
Q 014919          306 QCPNP----DFNRPEHRW--------RM--VQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       306 ~fpdp----w~k~~h~kr--------Rl--~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      --|=.    |-+.+..++        ++  +|.++|+...+.|||||+++.+|
T Consensus       178 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT  230 (284)
T d1sqga2         178 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  230 (284)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             eccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence            63210    111111111        11  36789999999999999999886

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.67  E-value=0.00016  Score=68.11  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=78.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..|||++||.|.=+..+|.... ...++++|.+    ....+++++.+..|+.+...|...+ +    ..+..||.|.
T Consensus       116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~-~----~~~~~fD~IL  190 (313)
T d1ixka_         116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI-G----ELNVEFDKIL  190 (313)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG-G----GGCCCEEEEE
T ss_pred             ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccc-c----cccccccEEE
Confidence            468999999999999999988644 5689999963    3444556778999999999998776 2    2367899998


Q ss_pred             EECC---------CCCCCCcchhh---h--hhhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCP---------NPDFNRPEHRW---R--MVQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fp---------dpw~k~~h~kr---R--l~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +--|         +|..+......   +  -.|.++|....+.|||||+++.+|
T Consensus       191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT  244 (313)
T d1ixka_         191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  244 (313)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence            7532         11110011111   1  136788999999999999988876

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.67  E-value=2.4e-06  Score=78.19  Aligned_cols=73  Identities=16%  Similarity=0.098  Sum_probs=54.5

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+..|||||||+|..+..|++.  ..++++||+.....+.+++  ...+|++++++|+.++     +.+....+.|+.|.
T Consensus        29 ~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~-----~~~~~~~~~vv~NL  101 (245)
T d1yuba_          29 ETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQF-----QFPNKQRYKIVGNI  101 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTT-----TCCCSSEEEEEEEC
T ss_pred             CCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhhccchhhhhhhhhcc-----ccccceeeeEeeee
Confidence            4688999999999999999998  4589999975443332222  2346999999999887     32456677788885


Q ss_pred             CC
Q 014919          308 PN  309 (416)
Q Consensus       308 pd  309 (416)
                      |.
T Consensus       102 PY  103 (245)
T d1yuba_         102 PY  103 (245)
T ss_dssp             CS
T ss_pred             eh
Confidence            53

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.60  E-value=0.00022  Score=68.70  Aligned_cols=116  Identities=10%  Similarity=0.057  Sum_probs=84.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCC---------------cEEEEEcChhhhhhh
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGIT---------------NGYFIATNATSTFRS  291 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~---------------nv~f~~~Da~~l~~~  291 (416)
                      +.+|||..||+|..++.+|...+...++..|++..|.+.++    .++..               ++.+.+.|+..++.+
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~  125 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  125 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence            57899999999999999999878779999998776665543    34433               377888998877432


Q ss_pred             hhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE-eCcHHHHHHHH-HHHHhCCC
Q 014919          292 IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLRMK-QQFLEYGK  362 (416)
Q Consensus       292 ~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~-tD~~~~~~~~~-~~~~~~~~  362 (416)
                          ....||.|.+   ||+ ..+        ..||+...+.++.||.|.+. ||...+.-... ..+..++.
T Consensus       126 ----~~~~fDvIDi---DPf-Gs~--------~pfldsAi~a~~~~Gll~vTaTD~a~L~G~~~~~~~r~Yg~  182 (375)
T d2dula1         126 ----RHRYFHFIDL---DPF-GSP--------MEFLDTALRSAKRRGILGVTATDGAPLCGAHPRACLRKYLA  182 (375)
T ss_dssp             ----STTCEEEEEE---CCS-SCC--------HHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSS
T ss_pred             ----hcCcCCcccC---CCC-CCc--------HHHHHHHHHHhccCCEEEEEecCchhhcCCCcHHHHHHhCC
Confidence                3567999877   674 222        38999999999999999985 78665432222 23445443

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.53  E-value=6.2e-05  Score=67.94  Aligned_cols=103  Identities=16%  Similarity=0.080  Sum_probs=64.8

Q ss_pred             CCCeEEEEeccccHHHHHHHHh----CCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhh-hhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF-RSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~----~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~-~~~~~~~~~s~D~v~  304 (416)
                      ++.+|||||++.|..++.+|..    .++.+++|+|+....... .....+|++++++|..+.. -+.+  ....+|.|+
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~-~~~~~~~I~~i~gDs~~~~~~~~l--~~~~~dlIf  156 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-PASDMENITLHQGDCSDLTTFEHL--REMAHPLIF  156 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC-CGGGCTTEEEEECCSSCSGGGGGG--SSSCSSEEE
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh-hhccccceeeeecccccHHHHHHH--HhcCCCEEE
Confidence            3678999999999998877753    478899999973221111 1223578999999986531 1112  344678777


Q ss_pred             EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919          305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI  346 (416)
Q Consensus       305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~  346 (416)
                      +-   .    .|...-.. .. + .+...|++||.+++. |.
T Consensus       157 ID---~----~H~~~~v~-~~-~-~~~~lLk~GG~iIve-D~  187 (232)
T d2bm8a1         157 ID---N----AHANTFNI-MK-W-AVDHLLEEGDYFIIE-DM  187 (232)
T ss_dssp             EE---S----SCSSHHHH-HH-H-HHHHTCCTTCEEEEC-SC
T ss_pred             Ec---C----CcchHHHH-HH-H-HHhcccCcCCEEEEE-cC
Confidence            64   2    12221111 12 2 356899999999884 54

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=0.00022  Score=61.68  Aligned_cols=120  Identities=17%  Similarity=0.165  Sum_probs=77.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhh-----hhhccCCCceeEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFR-----SIVASYPGKLILV  303 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~-----~~~~~~~~s~D~v  303 (416)
                      ++..||||||+.|.++..+++. .+...++|+|+..       ...++++.++++|......     ...  ....+|+|
T Consensus        22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~-------~~~i~~~~~~~~d~~~~~~~~~~~~~~--~~~~~DlV   92 (180)
T d1ej0a_          22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-------MDPIVGVDFLQGDFRDELVMKALLERV--GDSKVQVV   92 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-------CCCCTTEEEEESCTTSHHHHHHHHHHH--TTCCEEEE
T ss_pred             CCCeEEEEeccCCcceEEEEeeccccceEEEeeccc-------ccccCCceEeecccccchhhhhhhhhc--cCcceeEE
Confidence            3689999999999999998876 4557899999743       1356789999999976321     112  35679999


Q ss_pred             EEEC-CCCCCCCc-chhhhh--hhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHh
Q 014919          304 SIQC-PNPDFNRP-EHRWRM--VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE  359 (416)
Q Consensus       304 ~~~f-pdpw~k~~-h~krRl--~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~  359 (416)
                      +.-- ||.. ... ....+.  +....+.-..++|++||.|+++.=.....+.++..+..
T Consensus        93 lSD~ap~~s-g~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~  151 (180)
T d1ej0a_          93 MSDMAPNMS-GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS  151 (180)
T ss_dssp             EECCCCCCC-SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred             Eecccchhc-ccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHh
Confidence            7643 2211 000 000111  12355778899999999999985222234445555554

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00038  Score=64.74  Aligned_cols=112  Identities=8%  Similarity=0.031  Sum_probs=74.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..|||++||.|.-+..+|.. .+...++++|++    ....+++++.|..|+.+...|...+.+ ..+ ..+.||.|+
T Consensus        94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~-~~~-~~~~fD~VL  171 (293)
T d2b9ea1          94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP-SDP-RYHEVHYIL  171 (293)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT-TCG-GGTTEEEEE
T ss_pred             ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcc-ccc-ccceeeEEe
Confidence            4788999999999999999876 456789999973    445566778899999999999987621 111 125799998


Q ss_pred             EECC---------CC---CCCCcch--hhhh--hhHHHHHHHHhhccCCcEEEEEe
Q 014919          305 IQCP---------NP---DFNRPEH--RWRM--VQRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       305 ~~fp---------dp---w~k~~h~--krRl--~~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      +.-|         +|   |......  ..++  .|...+.... .|+|||.|+.+|
T Consensus       172 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsT  226 (293)
T d2b9ea1         172 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYST  226 (293)
T ss_dssp             ECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEE
T ss_pred             ecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEee
Confidence            7532         11   1111110  0122  2455666666 479999988876

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00016  Score=65.87  Aligned_cols=57  Identities=16%  Similarity=0.060  Sum_probs=46.3

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATST  288 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l  288 (416)
                      .+..|||||||+|.++..|++.  ..++++||+.....+.+++.  ..+|+.++.+|+..+
T Consensus        21 ~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~   79 (252)
T d1qyra_          21 KGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTF   79 (252)
T ss_dssp             TTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGC
T ss_pred             CCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhh
Confidence            4688999999999999999987  45899999877666655442  236899999999875

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.05  E-value=0.00064  Score=66.33  Aligned_cols=123  Identities=17%  Similarity=0.177  Sum_probs=76.4

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCC-------------CCeEEEEchHHHHHH----HHHHhCC--CcEEEEEcChhhhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRK-------------DLNFLGLELVTHCRD----SLQLSGI--TNGYFIATNATSTFR  290 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p-------------~~~~iGvD~~~~a~~----~a~~~~l--~nv~f~~~Da~~l~~  290 (416)
                      ...+|+|-.||+|.+++.+.++..             +.+++|+|+...+.+    .+.-++.  .+..+.+.|....  
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~--  239 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK--  239 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS--
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh--
Confidence            367899999999999998877532             235999996443332    2223443  3455667776543  


Q ss_pred             hhhccCCCceeEEEEECCCCCCCCcch-----------hhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH-----HHHHH
Q 014919          291 SIVASYPGKLILVSIQCPNPDFNRPEH-----------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV-----MLRMK  354 (416)
Q Consensus       291 ~~~~~~~~s~D~v~~~fpdpw~k~~h~-----------krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~-----~~~~~  354 (416)
                         + ....||.|..|  .||-.....           +.+-..-.|+..+.+.|++||++.+.+....+     ...++
T Consensus       240 ---~-~~~~fD~Ii~N--PPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR  313 (425)
T d2okca1         240 ---E-PSTLVDVILAN--PPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIR  313 (425)
T ss_dssp             ---C-CSSCEEEEEEC--CCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHH
T ss_pred             ---h-cccccceEEec--CCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHH
Confidence               1 35789999998  344211100           00112347999999999999998887654322     33455


Q ss_pred             HHHHhC
Q 014919          355 QQFLEY  360 (416)
Q Consensus       355 ~~~~~~  360 (416)
                      +.+.+.
T Consensus       314 ~~Ll~~  319 (425)
T d2okca1         314 KRLLQD  319 (425)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555443

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0011  Score=61.16  Aligned_cols=70  Identities=14%  Similarity=0.171  Sum_probs=51.1

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----hC-CCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SG-ITNGYFIATNATSTFRSIVASYPGKLILVS  304 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~  304 (416)
                      .+..|||||||+|..+..|+++.  .++++||+.....+..++    .. ..|+.++.+|+...     +  ......|+
T Consensus        21 ~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~-----~--~~~~~~vV   91 (278)
T d1zq9a1          21 PTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT-----D--LPFFDTCV   91 (278)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS-----C--CCCCSEEE
T ss_pred             CCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh-----h--hhhhhhhh
Confidence            46899999999999999999984  489999975554443332    22 35899999999876     1  12345677


Q ss_pred             EECC
Q 014919          305 IQCP  308 (416)
Q Consensus       305 ~~fp  308 (416)
                      .|.|
T Consensus        92 ~NLP   95 (278)
T d1zq9a1          92 ANLP   95 (278)
T ss_dssp             EECC
T ss_pred             cchH
Confidence            8843

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.76  E-value=0.0045  Score=55.82  Aligned_cols=74  Identities=18%  Similarity=0.116  Sum_probs=55.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEch-------HHHHHHHHHHhC------CCcEEEEEcChhhhhhhhhccCC
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-------VTHCRDSLQLSG------ITNGYFIATNATSTFRSIVASYP  297 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~-------~~~a~~~a~~~~------l~nv~f~~~Da~~l~~~~~~~~~  297 (416)
                      .++|||.=||.|.-+..+|..  .++|+++|.       +..+++++....      ..|++++++|+.+++.+    ..
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~----~~  162 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD----IT  162 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT----CS
T ss_pred             CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhc----cC
Confidence            468999999999999999988  579999993       344555544322      34899999999887542    25


Q ss_pred             CceeEEEEECCCCCCC
Q 014919          298 GKLILVSIQCPNPDFN  313 (416)
Q Consensus       298 ~s~D~v~~~fpdpw~k  313 (416)
                      .++|+|++   ||.+.
T Consensus       163 ~~~DvIYl---DPMFp  175 (250)
T d2oyra1         163 PRPQVVYL---DPMFP  175 (250)
T ss_dssp             SCCSEEEE---CCCCC
T ss_pred             CCCCEEEE---CCCCc
Confidence            67999987   66553

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.54  E-value=0.00056  Score=61.72  Aligned_cols=106  Identities=14%  Similarity=0.077  Sum_probs=61.9

Q ss_pred             CCeEEEEeccccHHHHHHHHhCCCCeEEEEch-HHHHHHH--HHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-VTHCRDS--LQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~-~~~a~~~--a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      ...|+|+|||.|.++..+|.+.+...+.|+++ ......-  .+..+ -| +.+...+...      -.+++.+|.|.+-
T Consensus        67 ~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~-~ni~~~~~~~dv~------~l~~~~~D~vlcD  139 (257)
T d2p41a1          67 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYG-WNLVRLQSGVDVF------FIPPERCDTLLCD  139 (257)
T ss_dssp             CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTT-GGGEEEECSCCTT------TSCCCCCSEEEEC
T ss_pred             CCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccc-cccccchhhhhHH------hcCCCcCCEEEee
Confidence            56899999999999999998876667888875 1100000  00011 12 3444333211      1146789999875


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      ....-+...-...|.  -+.|+.+.++|+|||.|+++.-
T Consensus       140 m~ess~~~~vd~~Rt--l~vLela~~wLk~gg~FvvKVl  176 (257)
T d2p41a1         140 IGESSPNPTVEAGRT--LRVLNLVENWLSNNTQFCVKVL  176 (257)
T ss_dssp             CCCCCSSHHHHHHHH--HHHHHHHHHHCCTTCEEEEEES
T ss_pred             CCCCCCCchhhhhhH--HHHHHHHHHHcccCCEEEEEEC
Confidence            321100001111122  2678888999999999999843

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.48  E-value=0.015  Score=49.01  Aligned_cols=97  Identities=15%  Similarity=0.166  Sum_probs=64.0

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhcc-CCCceeEEEEECC
Q 014919          231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQCP  308 (416)
Q Consensus       231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~-~~~s~D~v~~~fp  308 (416)
                      +..||=+|||. |..++.+|+..-..+++++|.++.-++.+++.|.+.  ++...-.++.+..... ...-+|.++-.-.
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~--~i~~~~~~~~~~v~~~t~g~G~D~vid~~g  105 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATD--ILNYKNGHIEDQVMKLTNGKGVDRVIMAGG  105 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSE--EECGGGSCHHHHHHHHTTTSCEEEEEECSS
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccc--cccccchhHHHHHHHHhhccCcceEEEccC
Confidence            56677799997 888999999765568999998777677777777653  2222222221111111 2345998865432


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .+              ..++...+.|+|+|++.+.
T Consensus       106 ~~--------------~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2         106 GS--------------ETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             CT--------------THHHHHHHHEEEEEEEEEC
T ss_pred             CH--------------HHHHHHHHHHhcCCEEEEE
Confidence            22              4578888999999999884

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.021  Score=56.65  Aligned_cols=111  Identities=22%  Similarity=0.200  Sum_probs=65.8

Q ss_pred             CCeEEEEeccccHHHHHHHHhC----C--------------CCeEEEEchHHHHHHHHH----HhCCC-c----EEEEEc
Q 014919          231 QPLVVDIGSGNGLFLLGMARKR----K--------------DLNFLGLELVTHCRDSLQ----LSGIT-N----GYFIAT  283 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~----p--------------~~~~iGvD~~~~a~~~a~----~~~l~-n----v~f~~~  283 (416)
                      +.+|+|-.||+|.|++...+..    .              ...++|+|+...+.+.+.    -++.. +    -.+...
T Consensus       165 ~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~  244 (524)
T d2ar0a1         165 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG  244 (524)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred             chhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhhh
Confidence            5789999999999998876541    1              126899997544433322    22321 1    123333


Q ss_pred             ChhhhhhhhhccCCCceeEEEEECCCCCCCCcchh--------hhhhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919          284 NATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR--------WRMVQRSLVEAVSDLLVHDGKVFLQSDIE  347 (416)
Q Consensus       284 Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~k--------rRl~~~~~l~~i~r~LkpgG~l~l~tD~~  347 (416)
                      +....  +..  ....||+|..|  .||-......        ..-.+-.|++.+.+.|+|||++.+.+...
T Consensus       245 ~~l~~--d~~--~~~kfD~Ii~N--PPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~  310 (524)
T d2ar0a1         245 NTLGS--DGE--NLPKAHIVATN--PPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  310 (524)
T ss_dssp             CTTSH--HHH--TSCCEEEEEEC--CCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             hhhhh--ccc--ccccceeEEec--CCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence            33221  111  34679999998  4442211000        00113469999999999999988876543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.22  E-value=0.036  Score=47.56  Aligned_cols=112  Identities=11%  Similarity=0.022  Sum_probs=68.7

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEE-EEcChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYF-IATNATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f-~~~Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+..||-+|||. |..+..+|+.....+++++|.+..-++.+++.|.+.+.. ...|..+-+.+..  ....+|.++-..
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t--~g~g~D~vid~v  102 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALL--GEPEVDCAVDAV  102 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHH--SSSCEEEEEECC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHh--CCCCcEEEEECc
Confidence            368999999998 767888888887889999998877777777777542211 1122222112222  245688876432


Q ss_pred             CCCCCCCcchhh-hhhhHHHHHHHHhhccCCcEEEEE
Q 014919          308 PNPDFNRPEHRW-RMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       308 pdpw~k~~h~kr-Rl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .-+-....|... ..-.+..++...+.++|+|++.+.
T Consensus       103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2         103 GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             cccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            111000011100 001247899999999999999875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.95  E-value=0.029  Score=47.24  Aligned_cols=99  Identities=17%  Similarity=0.066  Sum_probs=64.0

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEE-EEEcChhhhhhhhhcc-CCCceeEEEEEC
Q 014919          231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGY-FIATNATSTFRSIVAS-YPGKLILVSIQC  307 (416)
Q Consensus       231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~-f~~~Da~~l~~~~~~~-~~~s~D~v~~~f  307 (416)
                      +..||=+|||. |.+++.+|+..-..+++++|..+.-++.+++.|.+.+- .-..|..+........ ....+|.|+-.-
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~v  108 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEAT  108 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECS
T ss_pred             CCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEeecC
Confidence            67889999985 78888999887545899999887777777777765321 1112222221111111 234589886432


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ..|              ..++...+.|+|||++.+.
T Consensus       109 G~~--------------~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         109 GDS--------------RALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             SCT--------------THHHHHHHHEEEEEEEEEC
T ss_pred             Cch--------------hHHHHHHHHhcCCCEEEEE
Confidence            211              4578889999999998764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.53  E-value=0.083  Score=44.02  Aligned_cols=98  Identities=17%  Similarity=0.162  Sum_probs=64.9

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+..||=+|||. |..+..+|+......++.+|..+.-++.+++.|...  ++..+-.+.....-...++.+|.++-.-.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~--~i~~~~~~~~~~i~~~t~gg~D~vid~~G  105 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATH--VINSKTQDPVAAIKEITDGGVNFALESTG  105 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSE--EEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeE--EEeCCCcCHHHHHHHHcCCCCcEEEEcCC
Confidence            367788899985 345677787777778889998776667777777654  33333333222111113567998865311


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                                    .+..++...+.|+|+|++.+.
T Consensus       106 --------------~~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2         106 --------------SPEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             --------------CHHHHHHHHHTEEEEEEEEEC
T ss_pred             --------------cHHHHHHHHhcccCceEEEEE
Confidence                          136788999999999999884

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.41  E-value=0.036  Score=51.53  Aligned_cols=59  Identities=14%  Similarity=-0.029  Sum_probs=44.7

Q ss_pred             CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH-hCCCcEEEEEcChhhh
Q 014919          230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL-SGITNGYFIATNATST  288 (416)
Q Consensus       230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~-~~l~nv~f~~~Da~~l  288 (416)
                      ++..|||||+|.|.++..|.+.....+++++|.........++ ..-.|+.++.+|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhhc
Confidence            4678999999999999999887433589999975554444433 2336799999999765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.28  E-value=0.098  Score=43.06  Aligned_cols=99  Identities=12%  Similarity=0.060  Sum_probs=62.5

Q ss_pred             CCCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChh---hhhhhhhccCCCceeEEEE
Q 014919          230 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNAT---STFRSIVASYPGKLILVSI  305 (416)
Q Consensus       230 ~~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~---~l~~~~~~~~~~s~D~v~~  305 (416)
                      .+..||=+||| .|.++..+|+.. +++++++|....-++.+++.+............   +.....-......+|.++-
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid  104 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID  104 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred             CCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeee
Confidence            36778889999 577777788775 579999998777677777777553322221111   1101000001346787754


Q ss_pred             ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      . ..             .+..++...+.|+|+|++.+.
T Consensus       105 ~-~g-------------~~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2         105 C-SG-------------NEKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             C-SC-------------CHHHHHHHHHHSCTTCEEEEC
T ss_pred             c-CC-------------ChHHHHHHHHHHhcCCceEEE
Confidence            3 21             136788889999999999885

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.14  Score=42.17  Aligned_cols=100  Identities=14%  Similarity=0.051  Sum_probs=63.9

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc-ChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~-Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+..||=+|||. |..+..+|+.....+++++|....-++.+++.|.+.+..... |..+.....-......+|.++-.-
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            367888899976 445666777765568999998877777777778764433222 211111100000134688876532


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ..              +..++...+.+++||++.+.
T Consensus       106 G~--------------~~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2         106 GA--------------EASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             CC--------------HHHHHHHHHHSCTTCEEEEC
T ss_pred             CC--------------chhHHHHHHHhcCCCEEEEE
Confidence            21              36788999999999999885

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.077  Score=44.08  Aligned_cols=96  Identities=20%  Similarity=0.190  Sum_probs=64.1

Q ss_pred             CCCeEEEEec--cccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEE-EEcChhhhhhhhhccCCCceeEEEEE
Q 014919          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYF-IATNATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGC--G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f-~~~Da~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      .+.+||=.|+  |.|..++.+|+.. ++++++++.++..++.+++.|.+.+-- -..|..+-+.+..  ....+|.++-.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t--~~~g~d~v~d~  104 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYV--GEKGIDIIIEM  104 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHH--CTTCEEEEEES
T ss_pred             CCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhh--ccCCceEEeec
Confidence            3678999997  5788888899876 679999987666666677777764321 0112222112222  35669988653


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .               -...++...++|+|+|++.+.
T Consensus       105 ~---------------g~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2         105 L---------------ANVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             C---------------HHHHHHHHHHHEEEEEEEEEC
T ss_pred             c---------------cHHHHHHHHhccCCCCEEEEE
Confidence            1               125678889999999998874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.53  E-value=0.019  Score=47.85  Aligned_cols=95  Identities=13%  Similarity=0.036  Sum_probs=60.9

Q ss_pred             CCCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc-ChhhhhhhhhccCCCceeEEEEEC
Q 014919          230 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSIQC  307 (416)
Q Consensus       230 ~~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~-Da~~l~~~~~~~~~~s~D~v~~~f  307 (416)
                      .+..||-+||| .|.++..+|+.. +++++++|.+..-++.+++.|.+.+  +.. +-.+... .   ..+.+|.++...
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~--i~~~~~~~~~~-~---~~~~~d~vi~~~   99 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHY--IATLEEGDWGE-K---YFDTFDLIVVCA   99 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEE--EEGGGTSCHHH-H---SCSCEEEEEECC
T ss_pred             CCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEE--eeccchHHHHH-h---hhcccceEEEEe
Confidence            36788889999 677788888765 6899999986655666677776532  221 1112211 1   246799886542


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ..+..            ..++...+.|+|+|++.+.
T Consensus       100 ~~~~~------------~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2         100 SSLTD------------IDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             SCSTT------------CCTTTGGGGEEEEEEEEEC
T ss_pred             cCCcc------------chHHHHHHHhhccceEEEe
Confidence            22210            1134567899999999885

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=93.03  E-value=0.13  Score=44.87  Aligned_cols=80  Identities=15%  Similarity=0.096  Sum_probs=51.5

Q ss_pred             EEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCc--------chhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHH
Q 014919          279 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP--------EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM  350 (416)
Q Consensus       279 ~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~--------h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~  350 (416)
                      ++.++|..+++.. +  +++++|+|+..  .|+.-..        +..---.....++++.|+|+|||.+++..+...+ 
T Consensus         6 ~i~~gDcle~l~~-l--pd~sVdliitd--PPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~~~-   79 (256)
T d1g60a_           6 KIHQMNCFDFLDQ-V--ENKSVQLAVID--PPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNC-   79 (256)
T ss_dssp             SEEECCHHHHHHH-S--CTTCEEEEEEC--CCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHH-
T ss_pred             EEEeccHHHHHhh-C--cCCCcCEEEEC--CCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCchhh-
Confidence            4689999998764 4  58999999874  3332111        1000001236788999999999999877665443 


Q ss_pred             HHHHHHHHhCCCCc
Q 014919          351 LRMKQQFLEYGKGK  364 (416)
Q Consensus       351 ~~~~~~~~~~~~~~  364 (416)
                      ..+...+.+.++..
T Consensus        80 ~~~~~~~~~~g~~~   93 (256)
T d1g60a_          80 AFICQYLVSKGMIF   93 (256)
T ss_dssp             HHHHHHHHHTTCEE
T ss_pred             hhhhhhhhccccee
Confidence            34556677777653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.31  E-value=0.13  Score=43.08  Aligned_cols=96  Identities=11%  Similarity=0.035  Sum_probs=65.8

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEE-EcC--hhhhhhhhhccCCCceeEEEEE
Q 014919          231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFI-ATN--ATSTFRSIVASYPGKLILVSIQ  306 (416)
Q Consensus       231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~-~~D--a~~l~~~~~~~~~~s~D~v~~~  306 (416)
                      +..||=+|||. |..++.+|+..-...++.+|.++.-++.+++.|.+.+.-. ..|  .... ....  ..+-+|.++-.
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~-~~~~--~~~G~d~vie~  105 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDV-ITEL--TAGGVDYSLDC  105 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHH-HHHH--HTSCBSEEEES
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhh-Hhhh--hcCCCcEEEEe
Confidence            67888899998 8889999998877789999987766677777776643211 111  1111 1111  24568888653


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCC-cEEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ  343 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~Lkpg-G~l~l~  343 (416)
                      -.              .+..++...+.|++| |++.+.
T Consensus       106 ~G--------------~~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2         106 AG--------------TAQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             SC--------------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             cc--------------cchHHHHHHHHhhcCCeEEEec
Confidence            11              137789999999996 999885

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.13  E-value=0.31  Score=38.16  Aligned_cols=100  Identities=10%  Similarity=0.032  Sum_probs=66.7

Q ss_pred             ccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchh
Q 014919          239 SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR  318 (416)
Q Consensus       239 CG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~k  318 (416)
                      ||.|..+..+++...+.+++.+|......+.....   ++.++.+|+.+- ..+-...-...+.+.+..+|.        
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~---~~~~i~Gd~~~~-~~L~~a~i~~A~~vi~~~~~d--------   73 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS---GANFVHGDPTRV-SDLEKANVRGARAVIVNLESD--------   73 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT---TCEEEESCTTSH-HHHHHTTCTTCSEEEECCSSH--------
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc---CccccccccCCH-HHHHHhhhhcCcEEEEeccch--------
Confidence            78899999999988888899999754444444333   578999998763 211111235677777764432        


Q ss_pred             hhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHH
Q 014919          319 WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRM  353 (416)
Q Consensus       319 rRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~  353 (416)
                         ....++-...|.|.|...++..++.+.+.+.+
T Consensus        74 ---~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l  105 (129)
T d2fy8a1          74 ---SETIHCILGIRKIDESVRIIAEAERYENIEQL  105 (129)
T ss_dssp             ---HHHHHHHHHHHHHCSSSCEEEECSSGGGHHHH
T ss_pred             ---hhhHHHHHHHHHHCCCceEEEEEcCHHHHHHH
Confidence               11244566678889999999888877765543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.64  E-value=0.3  Score=42.89  Aligned_cols=82  Identities=6%  Similarity=-0.003  Sum_probs=51.0

Q ss_pred             EEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhh-----hhHHHHHHHHhhccCCcEEEEEeCc------
Q 014919          278 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRM-----VQRSLVEAVSDLLVHDGKVFLQSDI------  346 (416)
Q Consensus       278 v~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl-----~~~~~l~~i~r~LkpgG~l~l~tD~------  346 (416)
                      =.|+.+|..+.+.. +  +++|+|+|+..  .|+..........     .....++++.|+|||+|.+++..+.      
T Consensus         5 ~~~~~~D~le~l~~-l--~d~SIDliitD--PPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~   79 (279)
T d1eg2a_           5 HVYDVCDCLDTLAK-L--PDDSVQLIICD--PPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEA   79 (279)
T ss_dssp             EEEEECCHHHHHHT-S--CTTCEEEEEEC--CCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCT
T ss_pred             ceEEechHHHHHhh-C--cCCCccEEEEC--CCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccc
Confidence            35788999998764 3  58999999874  3332111110000     1246788999999999999885432      


Q ss_pred             --HHHHHHHHHHHHhCCCCc
Q 014919          347 --EEVMLRMKQQFLEYGKGK  364 (416)
Q Consensus       347 --~~~~~~~~~~~~~~~~~~  364 (416)
                        ...+..+...+...++..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~   99 (279)
T d1eg2a_          80 GSGDLISIISHMRQNSKMLL   99 (279)
T ss_dssp             TBCCHHHHHHHHHHHCCCEE
T ss_pred             cccchhhHHHHHHhccCcee
Confidence              123444555666666653

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.85  E-value=0.88  Score=37.51  Aligned_cols=110  Identities=8%  Similarity=0.021  Sum_probs=65.0

Q ss_pred             eEEEEeccc-cHHHHHHHHhCCCCeEEEE-chH-HHHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          233 LVVDIGSGN-GLFLLGMARKRKDLNFLGL-ELV-THCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       233 ~vLDIGCG~-G~~~~~lA~~~p~~~~iGv-D~~-~~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      ++.=||||. |..-....+..|+.+++|+ |.. .++.+.+++.+.+. .+ ...|..+++.      +..+|.|++.-|
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~------~~~iD~v~I~tp   75 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTK-IHGSYESLLE------DPEIDALYVPLP   75 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCE-EESSHHHHHH------CTTCCEEEECCC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcccccccee-ecCcHHHhhh------ccccceeeeccc
Confidence            355689995 6555555567789999987 553 34444445556543 33 3567766642      457899988633


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE---eCcHHHHHHHHHHHHhCCCC
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ---SDIEEVMLRMKQQFLEYGKG  363 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~---tD~~~~~~~~~~~~~~~~~~  363 (416)
                      ..              .-++.+..+|+.|=-+++.   +.+.+-++.+.+..++.+..
T Consensus        76 ~~--------------~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~  119 (184)
T d1ydwa1          76 TS--------------LHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  119 (184)
T ss_dssp             GG--------------GHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             ch--------------hhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence            21              1134456667766555553   12334466677777776553

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.67  E-value=0.37  Score=39.56  Aligned_cols=96  Identities=9%  Similarity=0.095  Sum_probs=62.4

Q ss_pred             CCeEEEEeccccHH-HHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhcc-CCCceeEEEEECC
Q 014919          231 QPLVVDIGSGNGLF-LLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQCP  308 (416)
Q Consensus       231 ~~~vLDIGCG~G~~-~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~-~~~s~D~v~~~fp  308 (416)
                      +..||=+|||.-.. ++.+|+......++++|....-++.+++.+.+.  ++..+-... ...... ....+|.++-...
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~--~i~~~~~~~-~~~~~~~~~~g~d~vid~~g  109 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH--VVDARRDPV-KQVMELTRGRGVNVAMDFVG  109 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSE--EEETTSCHH-HHHHHHTTTCCEEEEEESSC
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccce--eecCcccHH-HHHHHhhCCCCceEEEEecC
Confidence            67888899986544 567787766678999998776666676666553  333322111 111111 2345888865422


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .              +..++...+.|+++|++.+.
T Consensus       110 ~--------------~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         110 S--------------QATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             C--------------HHHHHHGGGGEEEEEEEEEC
T ss_pred             c--------------chHHHHHHHHHhCCCEEEEE
Confidence            1              36788899999999999874

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.52  E-value=0.16  Score=41.73  Aligned_cols=98  Identities=12%  Similarity=0.184  Sum_probs=64.6

Q ss_pred             CCCeEEEEec--cccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhcc-CCCceeEEEEE
Q 014919          230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQ  306 (416)
Q Consensus       230 ~~~~vLDIGC--G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~-~~~s~D~v~~~  306 (416)
                      .+..||=+||  |.|..++.+++......++++|....-++.+++.|.+.  ++..+-.+........ ....+|.++-.
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~--~i~~~~~~~~~~~~~~~~~~~~d~vid~  104 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY--VINASMQDPLAEIRRITESKGVDAVIDL  104 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSE--EEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCce--eeccCCcCHHHHHHHHhhcccchhhhcc
Confidence            3678999997  36666777888777689999998776667777777653  2333333322211110 24568977643


Q ss_pred             CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      -.              .+..++...+.|+|+|++.+.
T Consensus       105 ~g--------------~~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2         105 NN--------------SEKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             CC--------------CHHHHTTGGGGEEEEEEEEEC
T ss_pred             cc--------------cchHHHhhhhhcccCCEEEEe
Confidence            11              136678889999999999875

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=88.47  E-value=0.36  Score=43.10  Aligned_cols=64  Identities=19%  Similarity=0.180  Sum_probs=43.4

Q ss_pred             cEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCC--------cchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919          277 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR--------PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD  345 (416)
Q Consensus       277 nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~--------~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD  345 (416)
                      +=.++++|..+++.. +  +++++|+|+.-  .|+...        .|...--.....+.+++|+|+|+|.+++..+
T Consensus        12 ~~~l~~GD~le~l~~-l--~~~sVdli~tD--PPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~   83 (320)
T d1booa_          12 NGSMYIGDSLELLES-F--PEESISLVMTS--PPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG   83 (320)
T ss_dssp             SEEEEESCHHHHGGG-S--CSSCEEEEEEC--CCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCEEEehhHHHHHhh-C--ccCCCCEEEEC--CCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccccc
Confidence            447899999988664 4  58999999885  343211        1111011124679999999999999998643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=87.14  E-value=1.6  Score=33.73  Aligned_cols=98  Identities=10%  Similarity=0.013  Sum_probs=59.4

Q ss_pred             ccccHHHHHHHHhC--CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcc
Q 014919          239 SGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE  316 (416)
Q Consensus       239 CG~G~~~~~lA~~~--p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h  316 (416)
                      ||.|.++..+|+..  -+..|+.+|......+.+...+   ...+.+|+.+. +-+-...-...|.+++..++.-     
T Consensus         6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~---~~~~~gd~~~~-~~l~~a~i~~a~~vi~~~~~~~-----   76 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYA---THAVIANATEE-NELLSLGIRNFEYVIVAIGANI-----   76 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTC---SEEEECCTTCT-THHHHHTGGGCSEEEECCCSCH-----
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhC---Ccceeeecccc-hhhhccCCccccEEEEEcCchH-----
Confidence            46678888877653  3678999998877777665443   34567888653 1110001245787777655431     


Q ss_pred             hhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHH
Q 014919          317 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVML  351 (416)
Q Consensus       317 ~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~  351 (416)
                            ....+-...+.+.|...++..+....+.+
T Consensus        77 ------~~~~~~~~~~~~~~~~~iiar~~~~~~~~  105 (134)
T d2hmva1          77 ------QASTLTTLLLKELDIPNIWVKAQNYYHHK  105 (134)
T ss_dssp             ------HHHHHHHHHHHHTTCSEEEEECCSHHHHH
T ss_pred             ------HhHHHHHHHHHHcCCCcEEeecccHhHHH
Confidence                  11334445555667778888887776533

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.01  E-value=1.5  Score=35.24  Aligned_cols=105  Identities=16%  Similarity=0.154  Sum_probs=62.2

Q ss_pred             eEEEEeccc-cHH-HHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919          233 LVVDIGSGN-GLF-LLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP  310 (416)
Q Consensus       233 ~vLDIGCG~-G~~-~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp  310 (416)
                      .|+=||||. |.. +..|.+..++.+++|+|.....++.+.+.+..+..  ..+....       .....|+|++.-| |
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~-------~~~~~dlIila~p-~   72 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEG--TTSIAKV-------EDFSPDFVMLSSP-V   72 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEE--ESCGGGG-------GGTCCSEEEECSC-H
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhh--hhhhhhh-------hccccccccccCC-c
Confidence            356689976 443 34555566778999999988777777776643221  1222221       1335688877533 1


Q ss_pred             CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc-HHHHHHHHHHH
Q 014919          311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQF  357 (416)
Q Consensus       311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~-~~~~~~~~~~~  357 (416)
                      .          .....++++.+.++++-.+.-.+-. ....+.+.+.+
T Consensus        73 ~----------~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~  110 (171)
T d2g5ca2          73 R----------TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL  110 (171)
T ss_dssp             H----------HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH
T ss_pred             h----------hhhhhhhhhhccccccccccccccccHHHHHHHHHhh
Confidence            0          1247788999999998776644332 23334444433

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.10  E-value=1.4  Score=35.42  Aligned_cols=95  Identities=15%  Similarity=0.136  Sum_probs=58.3

Q ss_pred             CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919          231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN  309 (416)
Q Consensus       231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd  309 (416)
                      +..||=+|||. |..+..+|+.. ..+++++|..+.-++.+++.|.+.+  +..+-.+..........+ .+.++.... 
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~--i~~~~~~~~~~~~~~~~g-~~~~i~~~~-  102 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLT--VNARQEDPVEAIQRDIGG-AHGVLVTAV-  102 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEE--EETTTSCHHHHHHHHHSS-EEEEEECCS-
T ss_pred             CCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCcccc--ccccchhHHHHHHHhhcC-Ccccccccc-
Confidence            56677799976 55667777776 5899999987766777777776532  332222221111110123 343333211 


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                                   .+..++...+.|+|+|++.+.
T Consensus       103 -------------~~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2         103 -------------SNSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             -------------CHHHHHHHHTTEEEEEEEEEC
T ss_pred             -------------cchHHHHHHHHhcCCcEEEEE
Confidence                         135678889999999998874

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.03  E-value=3.2  Score=31.92  Aligned_cols=105  Identities=10%  Similarity=0.034  Sum_probs=62.0

Q ss_pred             ccccHHHHHHHHhC--CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcc
Q 014919          239 SGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE  316 (416)
Q Consensus       239 CG~G~~~~~lA~~~--p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h  316 (416)
                      ||.|.++..+|+..  .+..++.+|..+...+++.+..  ++.++.+|+.+. .-+-...-...|.+....++.      
T Consensus         6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~--~~~vi~Gd~~~~-~~l~~~~i~~a~~vv~~t~~d------   76 (132)
T d1lssa_           6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI--DALVINGDCTKI-KTLEDAGIEDADMYIAVTGKE------   76 (132)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC--SSEEEESCTTSH-HHHHHTTTTTCSEEEECCSCH------
T ss_pred             ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh--hhhhccCcccch-hhhhhcChhhhhhhcccCCcH------
Confidence            56688988888753  3678999998665555554331  467899999764 111111235678777654432      


Q ss_pred             hhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCC
Q 014919          317 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK  362 (416)
Q Consensus       317 ~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~  362 (416)
                      .    . .-+...+.+.+.+.-.+.. +.+..+.    +.+++.|.
T Consensus        77 ~----~-N~~~~~~~k~~~~~~iI~~-~~~~~~~----~~l~~~G~  112 (132)
T d1lssa_          77 E----V-NLMSSLLAKSYGINKTIAR-ISEIEYK----DVFERLGV  112 (132)
T ss_dssp             H----H-HHHHHHHHHHTTCCCEEEE-CSSTTHH----HHHHHTTC
T ss_pred             H----H-HHHHHHHHHHcCCceEEEE-ecCHHHH----HHHHHCCC
Confidence            1    1 1345566777888755544 4444443    34556554

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=84.63  E-value=0.76  Score=37.39  Aligned_cols=93  Identities=14%  Similarity=0.195  Sum_probs=60.1

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+..||=+|||. |.+++.+|+.. .++++++|....-++.+++.|.+.+  +..+-.....    .....+|.++-.-.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~--i~~~~~~~~~----~~~~~~D~vid~~g  102 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEV--VNSRNADEMA----AHLKSFDFILNTVA  102 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEE--EETTCHHHHH----TTTTCEEEEEECCS
T ss_pred             CCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEE--EECchhhHHH----HhcCCCceeeeeee
Confidence            367777799975 77788888876 6788899965544556666776533  3322222111    12356998875433


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      .+              ..++...+.|+|+|++.+.
T Consensus       103 ~~--------------~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2         103 AP--------------HNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             SC--------------CCHHHHHTTEEEEEEEEEC
T ss_pred             cc--------------hhHHHHHHHHhcCCEEEEe
Confidence            33              2356778899999999885

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.56  E-value=0.87  Score=36.65  Aligned_cols=94  Identities=13%  Similarity=0.098  Sum_probs=56.9

Q ss_pred             CCeEEEEeccccHH-HHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEE-EcChhhhhhhhhccCCCceeEEEEECC
Q 014919          231 QPLVVDIGSGNGLF-LLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFI-ATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       231 ~~~vLDIGCG~G~~-~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~-~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      +.+||=.|||.-.+ .+.+|+. ...+++++|..+.-++.+++.|.+.+.-. ..|....+....   ++ +|.++.. .
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~---~~-~~~~v~~-~  101 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV---GG-VHAAVVT-A  101 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHH---SS-EEEEEES-S
T ss_pred             CCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhccccc---CC-CceEEee-c
Confidence            56777789987554 4555555 56789999987766677777776533211 112222112111   33 4444332 1


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                       +            ....++...+.|+|+|++.+.
T Consensus       102 -~------------~~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2         102 -V------------SKPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             -C------------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             -C------------CHHHHHHHHHHhccCCceEec
Confidence             1            136788999999999999884

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=83.42  E-value=0.67  Score=43.18  Aligned_cols=111  Identities=13%  Similarity=0.119  Sum_probs=61.5

Q ss_pred             CeEEEEeccccHHHHHHHHh----------------CCCCeEEEEchH---HHHHHH-HH-HhCCCcEEEEEcChhhhhh
Q 014919          232 PLVVDIGSGNGLFLLGMARK----------------RKDLNFLGLELV---THCRDS-LQ-LSGITNGYFIATNATSTFR  290 (416)
Q Consensus       232 ~~vLDIGCG~G~~~~~lA~~----------------~p~~~~iGvD~~---~~a~~~-a~-~~~l~nv~f~~~Da~~l~~  290 (416)
                      -+|.|+||.+|..++.+...                .|+.+++--|+-   =+++-+ .. .....+-.|+.+=...+..
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~  132 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence            46899999999987533221                245566666630   011100 00 0111112233333333334


Q ss_pred             hhhccCCCceeEEEEECCCCCCCC-c----------chh-------hhhh-------hHHHHHHHHhhccCCcEEEEEe
Q 014919          291 SIVASYPGKLILVSIQCPNPDFNR-P----------EHR-------WRMV-------QRSLVEAVSDLLVHDGKVFLQS  344 (416)
Q Consensus       291 ~~~~~~~~s~D~v~~~fpdpw~k~-~----------h~k-------rRl~-------~~~~l~~i~r~LkpgG~l~l~t  344 (416)
                      ..|  +++|++.++..+.-.|..+ +          |..       ....       -..||+.=++-|+|||++++..
T Consensus       133 rLf--P~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~  209 (359)
T d1m6ex_         133 RLF--PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             CCS--CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hcC--CCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence            456  5899999999888888532 0          100       0001       1367888888999999999853

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=81.76  E-value=1.3  Score=39.09  Aligned_cols=110  Identities=13%  Similarity=0.048  Sum_probs=63.1

Q ss_pred             CCeEEEEeccccHHHHHHHHhC----CC------------------------------------CeEEEEchHHHHH---
Q 014919          231 QPLVVDIGSGNGLFLLGMARKR----KD------------------------------------LNFLGLELVTHCR---  267 (416)
Q Consensus       231 ~~~vLDIGCG~G~~~~~lA~~~----p~------------------------------------~~~iGvD~~~~a~---  267 (416)
                      ...++|=-||+|.++++.|...    |+                                    ..++|.|+...++   
T Consensus        51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A  130 (249)
T d1o9ga_          51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA  130 (249)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence            4569999999999999987631    11                                    1234555432222   


Q ss_pred             ----HHHHHhCCC-cEEEEEcChhhhhhh-hhccCCCceeEEEEECCCCCCCCcchh----hhhhhHHHHHHHHhhccCC
Q 014919          268 ----DSLQLSGIT-NGYFIATNATSTFRS-IVASYPGKLILVSIQCPNPDFNRPEHR----WRMVQRSLVEAVSDLLVHD  337 (416)
Q Consensus       268 ----~~a~~~~l~-nv~f~~~Da~~l~~~-~~~~~~~s~D~v~~~fpdpw~k~~h~k----rRl~~~~~l~~i~r~Lkpg  337 (416)
                          ++++..|+. -+++.++|+.+..+. .+. .+....+|.+|  .||=..-...    .+. ...+...+.++|...
T Consensus       131 ~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~-~~~~~GlIVtN--PPYGERl~~~~~~~~~~-~~~~~~~l~~~~p~~  206 (249)
T d1o9ga_         131 RRLRERLTAEGGALPCAIRTADVFDPRALSAVL-AGSAPDVVLTD--LPYGERTHWEGQVPGQP-VAGLLRSLASALPAH  206 (249)
T ss_dssp             HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH-TTCCCSEEEEE--CCGGGSSSSSSCCCHHH-HHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHcCCCceeeeeecchhccCcchhcc-CCCCCCEEEeC--CCccccccccccchHHH-HHHHHHHHHccCCCC
Confidence                234455665 489999998664211 011 24556889888  5552211101    112 257788888888544


Q ss_pred             cEEEEEeC
Q 014919          338 GKVFLQSD  345 (416)
Q Consensus       338 G~l~l~tD  345 (416)
                      .. ++.|+
T Consensus       207 s~-~~it~  213 (249)
T d1o9ga_         207 AV-IAVTD  213 (249)
T ss_dssp             CE-EEEEE
T ss_pred             cE-EEEeC
Confidence            44 44454

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=80.95  E-value=1  Score=36.79  Aligned_cols=95  Identities=14%  Similarity=0.011  Sum_probs=60.8

Q ss_pred             CCeEEEEecc--ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhcc-CCCceeEEEEEC
Q 014919          231 QPLVVDIGSG--NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVSIQC  307 (416)
Q Consensus       231 ~~~vLDIGCG--~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~-~~~s~D~v~~~f  307 (416)
                      +..||=.|+|  .|..++.+|+.. ++++++++.++.-++.+++.|.+.+  +..+-.++.+..... ....+|.++-. 
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~lGa~~v--i~~~~~d~~~~v~~~t~g~g~d~v~d~-  104 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGAWQV--INYREEDLVERLKEITGGKKVRVVYDS-  104 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSEE--EETTTSCHHHHHHHHTTTCCEEEEEEC-
T ss_pred             CCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhcCCeEE--EECCCCCHHHHHHHHhCCCCeEEEEeC-
Confidence            5677777555  688889999875 6899999987776777777786533  332222222211111 24568876543 


Q ss_pred             CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919          308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ  343 (416)
Q Consensus       308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~  343 (416)
                      ..+              +.+....+.|+|+|++.+.
T Consensus       105 ~g~--------------~~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2         105 VGR--------------DTWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             SCG--------------GGHHHHHHTEEEEEEEEEC
T ss_pred             ccH--------------HHHHHHHHHHhcCCeeeec
Confidence            211              3467888999999998764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=80.20  E-value=1.9  Score=35.54  Aligned_cols=98  Identities=13%  Similarity=0.026  Sum_probs=66.5

Q ss_pred             CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919          230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP  308 (416)
Q Consensus       230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp  308 (416)
                      .+.+|+=||+|. |..++..|... .++++.+|.....++..+.....++.+...+-..+ .+.+    ...|.|.----
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l-~~~~----~~aDivI~aal  104 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEI-ETAV----AEADLLIGAVL  104 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHH-HHHH----HTCSEEEECCC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhH-HHhh----ccCcEEEEeee
Confidence            468899999996 67788888876 68999999877777766655556788887777665 4333    24688754322


Q ss_pred             CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEE
Q 014919          309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF  341 (416)
Q Consensus       309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~  341 (416)
                        ||.++-+  .++.    ++..+.+|||..+.
T Consensus       105 --ipG~~aP--~lIt----~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         105 --VPGRRAP--ILVP----ASLVEQMRTGSVIV  129 (168)
T ss_dssp             --CTTSSCC--CCBC----HHHHTTSCTTCEEE
T ss_pred             --cCCcccC--eeec----HHHHhhcCCCcEEE
Confidence              2323222  2444    45567899999876