Citrus Sinensis ID: 014934
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 415 | 2.2.26 [Sep-21-2011] | |||||||
| Q8L3Z8 | 483 | Protein FIZZY-RELATED 2 O | yes | no | 0.975 | 0.838 | 0.778 | 0.0 | |
| Q8VZS9 | 475 | Protein FIZZY-RELATED 1 O | no | no | 0.959 | 0.837 | 0.764 | 1e-178 | |
| Q8LPL5 | 481 | Protein FIZZY-RELATED 3 O | no | no | 0.872 | 0.752 | 0.608 | 1e-124 | |
| Q9UM11 | 496 | Fizzy-related protein hom | yes | no | 0.881 | 0.737 | 0.549 | 1e-116 | |
| Q9R1K5 | 493 | Fizzy-related protein hom | yes | no | 0.891 | 0.750 | 0.545 | 1e-115 | |
| Q54KM3 | 754 | Anaphase-promoting comple | yes | no | 0.655 | 0.360 | 0.540 | 4e-92 | |
| O13286 | 556 | WD repeat-containing prot | yes | no | 0.713 | 0.532 | 0.508 | 1e-87 | |
| O94423 | 421 | Meiotic fizzy-related pro | no | no | 0.874 | 0.862 | 0.453 | 4e-87 | |
| Q54MZ3 | 499 | Anaphase-promoting comple | no | no | 0.725 | 0.603 | 0.491 | 5e-80 | |
| Q62623 | 499 | Cell division cycle prote | yes | no | 0.831 | 0.691 | 0.415 | 2e-76 |
| >sp|Q8L3Z8|FZR2_ARATH Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana GN=FZR2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/428 (77%), Positives = 361/428 (84%), Gaps = 23/428 (5%)
Query: 2 DDPTESPQL---------NLPPTMSLQPLTPPSDHISRMINANHHQSPSRA-----IYSD 47
+DPT S + NL P M+ P+ I+R+INAN QSPS + IYSD
Sbjct: 4 EDPTASNVITNSNSSSMRNLSPAMN-TPVVSLESRINRLINANQSQSPSPSSLSRSIYSD 62
Query: 48 RFIPSRSSSNFDLFNISQPSPNSPAVTDSHKDDNSGTYTALLRAALFGPETPEKKDVLGP 107
RFIPSRS SNF LF++S PSP+ K+D +G+Y LLRAA+FGPETPEK+D+ G
Sbjct: 63 RFIPSRSGSNFALFDLS-PSPSKDG-----KEDGAGSYATLLRAAMFGPETPEKRDITGF 116
Query: 108 PSGRNIFRFKSETRRSLHSLSPFGFDDDVASGVSHS-PVKAPRKVPRSPYKILDAPALQD 166
S RNIFRFK+ET RSL+S SPFG DDD + GVSHS PVKAPRKVPRSPYK+LDAPALQD
Sbjct: 117 SSSRNIFRFKTETHRSLNSFSPFGVDDD-SPGVSHSGPVKAPRKVPRSPYKVLDAPALQD 175
Query: 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG 226
DFYLNLVDWS+ NVLAVGLGNCVYLWNACSSKVTKLCDLG +DSVCSVGWA R THLAVG
Sbjct: 176 DFYLNLVDWSAQNVLAVGLGNCVYLWNACSSKVTKLCDLGAEDSVCSVGWALRGTHLAVG 235
Query: 227 TSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK 286
TS GKVQIWDASRCKR RTMEGHRLRVGALAW SS+LSSGSRDKSILQRDIR QED VSK
Sbjct: 236 TSTGKVQIWDASRCKRTRTMEGHRLRVGALAWGSSVLSSGSRDKSILQRDIRCQEDHVSK 295
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY EHTAAVKAIAWSPH+H
Sbjct: 296 LAGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYSEHTAAVKAIAWSPHVH 355
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406
GLLASGGGTADRCIRFWNTTTNTHLS +DT SQVCNL WSKNVNELVSTHGYSQNQIIVW
Sbjct: 356 GLLASGGGTADRCIRFWNTTTNTHLSSIDTCSQVCNLAWSKNVNELVSTHGYSQNQIIVW 415
Query: 407 RYPTMSKV 414
+YPTMSK+
Sbjct: 416 KYPTMSKI 423
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Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). Necessary and sufficient for endoreduplication and correct cell expansion. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZS9|FZR1_ARATH Protein FIZZY-RELATED 1 OS=Arabidopsis thaliana GN=FZR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 625 bits (1611), Expect = e-178, Method: Compositional matrix adjust.
Identities = 312/408 (76%), Positives = 351/408 (86%), Gaps = 10/408 (2%)
Query: 9 QLNLPPTMSLQPLTPPSDHISRMINANHHQSPSRAIYSDRFIPSRSSSNFDLFNISQPSP 68
QLNLPP+M+ +P I+R+I++NH+ SPS+ IYSDRFIPSRS SNF LF+++ SP
Sbjct: 16 QLNLPPSMN-RPTVSLESRINRLIDSNHYHSPSKPIYSDRFIPSRSGSNFALFDLASSSP 74
Query: 69 NSPAVTDSHKDDNSGTYTALLRAALFGPETPEKKDVLG--PPSGRNIFRFKSETRRSLHS 126
N K+D +G+Y +LL+ ALFGP TPEK DV+ PSG NIFRFK+ET+RSL+
Sbjct: 75 NK----KDGKEDGAGSYASLLKTALFGPVTPEKSDVVNGFSPSG-NIFRFKTETQRSLNL 129
Query: 127 LSPFGFDDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLG 186
PF D DV SGVS SPVK+PRK+ RSPYK+LDAPALQDDFYLNLVDWS+ NVLAVGLG
Sbjct: 130 YPPF--DSDVVSGVSPSPVKSPRKILRSPYKVLDAPALQDDFYLNLVDWSAQNVLAVGLG 187
Query: 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246
NCVYLWNACSSKVTKLCDLG+D++VCSVGWA R THLA+GTS G VQIWD RCK +RTM
Sbjct: 188 NCVYLWNACSSKVTKLCDLGVDETVCSVGWALRGTHLAIGTSSGTVQIWDVLRCKNIRTM 247
Query: 247 EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306
EGHRLRVGALAWSSS+LSSGSRDKSILQRDIR QED VSKL GHKSE+CGLKWS DNREL
Sbjct: 248 EGHRLRVGALAWSSSVLSSGSRDKSILQRDIRTQEDHVSKLKGHKSEICGLKWSSDNREL 307
Query: 307 ASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366
ASGGNDN+LFVWNQHSTQPVL++CEH AAVKAIAWSPH GLLASGGGTADRCIRFWNTT
Sbjct: 308 ASGGNDNKLFVWNQHSTQPVLRFCEHAAAVKAIAWSPHHFGLLASGGGTADRCIRFWNTT 367
Query: 367 TNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
TNTHL+C+DT SQVCNLVWSKNVNELVSTHGYSQNQIIVW+YPTMSK+
Sbjct: 368 TNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIVWKYPTMSKL 415
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Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPL5|FZR3_ARATH Protein FIZZY-RELATED 3 OS=Arabidopsis thaliana GN=FZR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/383 (60%), Positives = 282/383 (73%), Gaps = 21/383 (5%)
Query: 46 SDRFIPSRSSSNFDLFNISQPSPNSPAVTDSHKDDNSGTYTALLRAALFGPETPEKKDVL 105
SDRFIP RSSS F++ P +P K+ + Y+ LL++ LFG + +L
Sbjct: 46 SDRFIPCRSSSRLHAFDLQDKEPTTPV-----KEGGNEAYSRLLKSELFGSDFASP--LL 98
Query: 106 GPPSGR-----------NIFRFKSETRRSLHSLSPFGF---DDDVASGVSHSPVKAPRKV 151
P G+ N+ RFK++ S S +D+ S S P K PRKV
Sbjct: 99 SPAGGQGSASSPMSPCTNMLRFKTDRSNSSPSSPFSPSILGNDNGHSSDSSPPPKPPRKV 158
Query: 152 PRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSV 211
P++P+K+LDAP+LQDDFYLN+VDWSS NVLAVGLG CVYLW A +SKVTKLCDLG +DSV
Sbjct: 159 PKTPHKVLDAPSLQDDFYLNVVDWSSQNVLAVGLGTCVYLWTASNSKVTKLCDLGPNDSV 218
Query: 212 CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKS 271
CSV W +++++GTSHG+VQ+WD ++CKRVRTM GH+ R G LAW+S +LSSGSRD++
Sbjct: 219 CSVQWTREGSYISIGTSHGQVQVWDGTQCKRVRTMGGHQTRTGVLAWNSRILSSGSRDRN 278
Query: 272 ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE 331
ILQ DIR Q DFVSKL GHKSEVCGLKWS+D+RELASGGNDN+L VWN HS QP+LK E
Sbjct: 279 ILQHDIRVQSDFVSKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVWNNHSQQPILKLTE 338
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNE 391
HTAAVKAI WSPH LLASGGGTADRCIRFWNTT L+ +DTGSQVCNL WSKNVNE
Sbjct: 339 HTAAVKAITWSPHQSSLLASGGGTADRCIRFWNTTNGNQLNSIDTGSQVCNLAWSKNVNE 398
Query: 392 LVSTHGYSQNQIIVWRYPTMSKV 414
+VSTHGYSQNQI++W+YP+MSKV
Sbjct: 399 IVSTHGYSQNQIMLWKYPSMSKV 421
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Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9UM11|FZR_HUMAN Fizzy-related protein homolog OS=Homo sapiens GN=FZR1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/397 (54%), Positives = 277/397 (69%), Gaps = 31/397 (7%)
Query: 45 YSDRFIPSRS----SSNFDLFNISQPSPNS-----PAVTDSHKDDNSGTYTALLRAALFG 95
+ DRFIPSR+ S NF N ++ SP+ A +D+ KD + Y+ALL+ L G
Sbjct: 44 HGDRFIPSRAGANWSVNFHRINENEKSPSQNRKAKDATSDNGKDGLA--YSALLKNELLG 101
Query: 96 --------PETPEKKDVLGPPSGRNIFRFKSETRRSL----HSLSPFGFD--DDVASGVS 141
P+T +++ P + +F + T+RS + +SP+ + + +
Sbjct: 102 AGIEKVQDPQTEDRRLQPSTPEKKGLFTYSLSTKRSSPDDGNDVSPYSLSPVSNKSQKLL 161
Query: 142 HSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTK 201
SP K RK+ + P+K+LDAP LQDDFYLNLVDWSS NVL+VGLG CVYLW+AC+S+VT+
Sbjct: 162 RSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCVYLWSACTSQVTR 221
Query: 202 LCDLGID-DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS 260
LCDL ++ DSV SVGW+ R +AVGT G VQIWDA+ K++ +EGH RVGALAW++
Sbjct: 222 LCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGKKLSMLEGHTARVGALAWNA 281
Query: 261 SLLSSGSRDKSILQRDIRA---QEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317
LSSGSRD+ ILQRDIR Q + +L GH+ EVCGLKWS D++ LASGGNDN+L V
Sbjct: 282 EQLSSGSRDRMILQRDIRTPPLQSE--RRLQGHRQEVCGLKWSTDHQLLASGGNDNKLLV 339
Query: 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG 377
WN S PV +Y EH AAVKAIAWSPH HGLLASGGGTADRCIRFWNT T L C+DTG
Sbjct: 340 WNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLTGQPLQCIDTG 399
Query: 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
SQVCNL WSK+ NELVSTHGYSQNQI+VW+YP++++V
Sbjct: 400 SQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQV 436
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Key regulator of ligase activity of the anaphase promoting complex/cyclosome (APC/C), which confers substrate specificity upon the complex. Associates with the APC/C in late mitosis, in replacement of CDC20, and activates the APC/C during anaphase and telophase. The APC/C remains active in degrading substrates to ensure that positive regulators of the cell cycle do not accumulate prematurely. At the G1/S transition FZR1 is phosphorylated, leading to its dissociation from the APC/C. Following DNA damage, it is required for the G2 DNA damage checkpoint: its dephosphorylation and reassociation with the APC/C leads to the ubiquitination of PLK1, preventing entry into mitosis. Homo sapiens (taxid: 9606) |
| >sp|Q9R1K5|FZR_MOUSE Fizzy-related protein homolog OS=Mus musculus GN=Fzr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 220/403 (54%), Positives = 281/403 (69%), Gaps = 33/403 (8%)
Query: 39 SPSRAIYSDRFIPSRS----SSNFDLFNISQPSPNS-----PAVTDSHKDDNSGTYTALL 89
SPS+ + DRFIPSR+ S NF N ++ SP+ A +D+ KD + Y+ALL
Sbjct: 40 SPSK--HGDRFIPSRAGANWSVNFHRINENEKSPSQNRKAKDATSDNGKDGLA--YSALL 95
Query: 90 RAALFG--------PETPEKKDVLGPPSGRNIFRFKSETRRSL----HSLSPFGFD--DD 135
+ L G P+T +++ P + +F + ++RS + +SP+ +
Sbjct: 96 KNELLGAGIEKVQDPQTEDRRLQPSTPEHKGLFTYSLSSKRSSPDDGNDVSPYSLSPVSN 155
Query: 136 VASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNAC 195
+ + SP K RK+ + P+K+LDAP LQDDFYLNLVDWSS NVL+VGLG CVYLW+AC
Sbjct: 156 KSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCVYLWSAC 215
Query: 196 SSKVTKLCDLGID-DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVG 254
+S+VT+LCDL ++ DSV SVGW+ R +AVGT G VQIWDA+ K++ +EGH RVG
Sbjct: 216 TSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGKKLSMLEGHTARVG 275
Query: 255 ALAWSSSLLSSGSRDKSILQRDIRA---QEDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311
ALAW++ LSSGSRD+ ILQRDIR Q + +L GH+ EVCGLKWS D++ LASGGN
Sbjct: 276 ALAWNADQLSSGSRDRMILQRDIRTPPLQSE--RRLQGHRQEVCGLKWSTDHQLLASGGN 333
Query: 312 DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371
DN+L VWN S PV +Y EH AAVKAIAWSPH HGLLASGGGTADRCIRFWNT T L
Sbjct: 334 DNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLTGQPL 393
Query: 372 SCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
C+DTGSQVCNL WSK+ NELVSTHGYSQNQI+VW+YP++++V
Sbjct: 394 QCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQV 436
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Key regulator of ligase activity of the anaphase promoting complex/cyclosome (APC/C), which confers substrate specificity upon the complex. Associates with the APC/C in late mitosis, in replacement of CDC20, and activates the APC/C during anaphase and telophase. The APC/C remains active in degrading substrates to ensure that positive regulators of the cell cycle do not accumulate prematurely. At the G1/S transition FZR1 is phosphorylated, leading to its dissociation from the APC/C. Following DNA damage, it is required for the G2 DNA damage checkpoint: its dephosphorylation and reassociation with the APC/C leads to the ubiquitination of PLK1, preventing entry into mitosis. Mus musculus (taxid: 10090) |
| >sp|Q54KM3|CDH1_DICDI Anaphase-promoting complex subunit cdh1 OS=Dictyostelium discoideum GN=cdh1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (868), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 165/305 (54%), Positives = 208/305 (68%), Gaps = 33/305 (10%)
Query: 143 SPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKL 202
SP K RK+ ++P KILDAP ++DDFYLNL+DWSSHN+LAVGL VYLWNA +S+V+KL
Sbjct: 389 SPRKPQRKISKTPIKILDAPMIKDDFYLNLIDWSSHNILAVGLDTSVYLWNATTSQVSKL 448
Query: 203 CDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSS 261
C++ V SVGW R HLA+G + G V IWD ++ K++R ++GH RV ALAW++
Sbjct: 449 CEMESGQPVSSVGWIQRGGIHLAIGGTDGVVSIWDVNKKKKIRELQGHNTRVNALAWNNH 508
Query: 262 LLSSGSRDKSILQRDIR-AQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320
+LSSG +DK IL D+R ++ ++L GH+ E+CGLKWS D ++LASGGNDN L VW+
Sbjct: 509 ILSSGGKDKVILHHDVRDCSNNYTNRLVGHRHEICGLKWSPDGQQLASGGNDNLLNVWDH 568
Query: 321 HST-------------------------------QPVLKYCEHTAAVKAIAWSPHLHGLL 349
T +P+ ++ H AAVKAIAWSPH GLL
Sbjct: 569 SMTQQPQQQHQPPPPPPSSNTSSISQQQQQQNTSKPLYQFKFHYAAVKAIAWSPHQRGLL 628
Query: 350 ASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409
ASGGGT D+CIRFWNTTT + +DTGSQVCNL WSKN+NELVSTHGYSQNQI VW YP
Sbjct: 629 ASGGGTHDKCIRFWNTTTGQSIQSIDTGSQVCNLAWSKNINELVSTHGYSQNQITVWNYP 688
Query: 410 TMSKV 414
TM+ V
Sbjct: 689 TMTPV 693
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Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. Dictyostelium discoideum (taxid: 44689) |
| >sp|O13286|SRW1_SCHPO WD repeat-containing protein srw1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srw1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 323 bits (829), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 153/301 (50%), Positives = 209/301 (69%), Gaps = 5/301 (1%)
Query: 115 RFKSETRRSLHSLSPF-GFDDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLV 173
+++ R+++SLSP D+ +S S ++ R++P PY++LDAP L DFYLNL+
Sbjct: 201 QYQDNPNRTIYSLSPVRSITKDL---ISASRLEG-RELPSIPYRVLDAPGLAGDFYLNLL 256
Query: 174 DWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQ 233
DW N+LAV L + VYLW+ SS+VT + + D+V S+ W R THLAVGT +G V+
Sbjct: 257 DWGQCNMLAVALASRVYLWSGISSEVTVMHNFYPTDTVTSLRWVQRGTHLAVGTHNGSVE 316
Query: 234 IWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSE 293
IWDA+ CK+ RTM GH RVGAL+W+ +LSSG RD IL RD+RA E + L+ H+ E
Sbjct: 317 IWDAATCKKTRTMSGHTERVGALSWNDHVLSSGGRDNHILHRDVRAPEHYFRVLTAHRQE 376
Query: 294 VCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353
VCGL+W+ + LASGGNDN L VW++ +P+ + H AAVKAI WSPH G+LASGG
Sbjct: 377 VCGLEWNSNENLLASGGNDNALMVWDKFEEKPLYSFHNHIAAVKAITWSPHQRGILASGG 436
Query: 354 GTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413
GTADR I+ WNT + L +DTGSQVCNL+WSK NE +STHG+ +N++ +W YP++S+
Sbjct: 437 GTADRTIKLWNTQRGSMLHNIDTGSQVCNLLWSKQTNEFISTHGFMENEVALWNYPSVSR 496
Query: 414 V 414
V
Sbjct: 497 V 497
|
Has a role in cell differentiation and cell cycling by negatively regulating cig2 and cdc12-associated cdc2. Down-regulates the level of cdc13, particularly in a nitrogen deprived environment. Regulator of cell cycle G1 phase progression. Prevents onset of mitosis during the pre-Start G1 period. Required for degradation of cdc13 mitotic cyclin B during G1 arrest but not during mitotic exit. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O94423|MFR1_SCHPO Meiotic fizzy-related protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mfr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (824), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 170/375 (45%), Positives = 229/375 (61%), Gaps = 12/375 (3%)
Query: 47 DRFIPSRSSSNFDLFNISQPSPNSPAVTDSH--KDDNSGT----YTALLRAALFGPETPE 100
DRFIP R+ SN FN S S ++ + SGT + LL LFG +
Sbjct: 3 DRFIPIRNVSN--EFNFSFQSFKECVLSHGSNLRRKTSGTIQRQFMELLSMELFGSQASR 60
Query: 101 KKDVLGPPSGRNIFRFKSET-RRSLHSLSPFGFDDDVASGVSHSPVKAPRKVPRSPYKIL 159
+ R I + +T R +SLSP + + P K R P++PYKIL
Sbjct: 61 SRAFYYGEDKRKIEKKMLDTPDRKSYSLSPI---SPQSQDMLRQPQKPKRAFPKTPYKIL 117
Query: 160 DAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR 219
DAP L++DFYLNL+DW NVLAVGL + +YLW+A S KV +L D G + V SV W +
Sbjct: 118 DAPYLKNDFYLNLLDWGQSNVLAVGLASSIYLWSAASGKVVQLHDFGATNHVTSVLWTGK 177
Query: 220 NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRA 279
T LAVGT G + IWD K VR+++GH RV ALAW+ + L+SG +D+ IL D+RA
Sbjct: 178 GTQLAVGTDSGVIYIWDIESTKSVRSLKGHSERVAALAWNDNTLTSGGKDEVILHHDLRA 237
Query: 280 QEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAI 339
+ H+ E+CGL+W +LASGGNDN LFVW+ S++P+ K+ EHTAAVKAI
Sbjct: 238 PGCCAEMMKVHEQEICGLQWDRSLGQLASGGNDNNLFVWDYRSSRPLHKFEEHTAAVKAI 297
Query: 340 AWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS 399
WSPH G+LASGGGT DRC+ NT T + +DTGSQVCN+ WSK NE+V+THG++
Sbjct: 298 GWSPHQRGILASGGGTIDRCLTIHNTLTGRLQNKLDTGSQVCNMAWSKTSNEIVTTHGFA 357
Query: 400 QNQIIVWRYPTMSKV 414
+NQ+ +W+YP++ +
Sbjct: 358 KNQVSLWKYPSLKNI 372
|
Meiosis-specific activator of the anaphase promoting complex/cyclosome (APC/C). Involved in cdc13 degradation. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54MZ3|CDC20_DICDI Anaphase-promoting complex subunit cdc20 OS=Dictyostelium discoideum GN=cdc20 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (763), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 202/311 (64%), Gaps = 10/311 (3%)
Query: 113 IFRFKSE-----TRRSLHSLSPFGFDDDVASG-VSHSPVKAPRKVPRSPYKILDAPALQD 166
I FKS+ S +SL + V S S K R++P+ P +ILDAP + D
Sbjct: 121 ILSFKSKAPVGNVSSSTNSLRVLYSQNQVGSTPTDQSLKKQFRQIPQQPERILDAPDIVD 180
Query: 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAV 225
D+YLNL+DWSS NV+A+ LG VYLWNA +S++ +L + DD + S+ W +LAV
Sbjct: 181 DYYLNLLDWSSQNVIAIPLGQTVYLWNATTSEIQRLFQVEQQDDYITSLQWTKDGNYLAV 240
Query: 226 GTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVS 285
GT+ +Q+WD + K+VR + GH RVGALAW+ +LSSGS D +I D+R Q VS
Sbjct: 241 GTNSCTIQLWDVAHTKKVRELRGHAGRVGALAWNDYILSSGSSDTNIFNHDVRVQNHHVS 300
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ---PVLKYCEHTAAVKAIAWS 342
LSGH EVCGLKWS+D +LASGGNDN + +W+ +S P + +HTAAV+A+AW
Sbjct: 301 TLSGHSQEVCGLKWSHDGGQLASGGNDNIINIWDINSENFETPAHTFEQHTAAVRALAWC 360
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P LLA+GGG ADR IRFWNT T L+ +DT SQVC++ WS ELVS+HGYSQNQ
Sbjct: 361 PFQPNLLATGGGAADRTIRFWNTITGVCLNTVDTMSQVCSIQWSTTYRELVSSHGYSQNQ 420
Query: 403 IIVWRYPTMSK 413
+ VW+YP+M K
Sbjct: 421 LCVWKYPSMVK 431
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q62623|CDC20_RAT Cell division cycle protein 20 homolog OS=Rattus norvegicus GN=Cdc20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 159/383 (41%), Positives = 220/383 (57%), Gaps = 38/383 (9%)
Query: 47 DRFIPSRSSSNFDLFNISQPSPNSPAVTDSHKDDNSGTYTALLRAALFGPETPEKKDVLG 106
DR+IP RS+S ++ + N P ++ GT P E +
Sbjct: 77 DRYIPQRSASQMEVASFLLSKENQP--------EDGGT-----------PTKKEHQKAWA 117
Query: 107 PPSGRNIFRFKSETRRSLH-----SLSPFGFDDDVASGVSH-----SPVKAPRKVPRSPY 156
RN+ F E + L +P G+ + + S S KA R +P P
Sbjct: 118 ----RNLNGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKACRYIPSLPD 173
Query: 157 KILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGI-DDSVCSVG 215
+ILDAP +++D+YLNLVDWSS NVLAV L N VYLWNA S + +L + D + SV
Sbjct: 174 RILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQMEQPGDYISSVA 233
Query: 216 WANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQR 275
W +LAVGTS+ +VQ+WD + KR+R M H RV +L+W+S +LSSGSR I
Sbjct: 234 WIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLSWNSYILSSGSRSGHIHHH 293
Query: 276 DIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW----NQHSTQPVLKYCE 331
D+R E V+ LSGH EVCGL+W+ D R LASGGNDN + VW + P+ + +
Sbjct: 294 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWVPLQTFTQ 353
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNE 391
H AVKA+AW P +LA+GGGT+DR IR WN + LS +D SQVC+++WS + E
Sbjct: 354 HQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPHYKE 413
Query: 392 LVSTHGYSQNQIIVWRYPTMSKV 414
L+S HG++QNQ+++W+YPTM+KV
Sbjct: 414 LISGHGFAQNQLVIWKYPTMAKV 436
|
Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation (By similarity). Interacts with NEK2. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 415 | ||||||
| 225734419 | 484 | putative fizzy-like protein [Gossypium h | 0.983 | 0.842 | 0.813 | 0.0 | |
| 255537225 | 545 | WD-repeat protein, putative [Ricinus com | 0.968 | 0.737 | 0.819 | 0.0 | |
| 224071678 | 492 | predicted protein [Populus trichocarpa] | 0.997 | 0.841 | 0.793 | 0.0 | |
| 297803828 | 476 | WD-40 repeat family protein [Arabidopsis | 0.975 | 0.850 | 0.792 | 0.0 | |
| 225426730 | 497 | PREDICTED: protein FIZZY-RELATED 2-like | 0.985 | 0.822 | 0.776 | 0.0 | |
| 224058623 | 488 | predicted protein [Populus trichocarpa] | 0.951 | 0.809 | 0.821 | 0.0 | |
| 449452504 | 524 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.956 | 0.757 | 0.812 | 0.0 | |
| 449530095 | 503 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.963 | 0.795 | 0.813 | 0.0 | |
| 4558462 | 475 | cell cycle switch protein [Medicago sati | 0.906 | 0.791 | 0.818 | 0.0 | |
| 356565305 | 465 | PREDICTED: protein FIZZY-RELATED 2-like | 0.949 | 0.847 | 0.8 | 0.0 |
| >gi|225734419|gb|ACO25189.1| putative fizzy-like protein [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/430 (81%), Positives = 380/430 (88%), Gaps = 22/430 (5%)
Query: 1 MDDPT-----------ESPQLNLPPTMS-----LQPLTPPSDHISRMINANHHQSPSRAI 44
MDDPT E+ +LNLP MS L+ L + HI+R+IN+N++ SPSR I
Sbjct: 1 MDDPTTVRNQRNQSAPETTRLNLPARMSDSSVYLENLPSRTMHINRLINSNYNSSPSRTI 60
Query: 45 YSDRFIPSRSSSNFDLFNISQPSPNSPAVTDSHKDDNSGTYTALLRAALFGPETPEKKDV 104
YSDRFIPSRS SNF LF+IS NSP + K+D SGTY +LLRAALFGP+TP+KKD
Sbjct: 61 YSDRFIPSRSGSNFALFDIS----NSPTSAEG-KEDGSGTYNSLLRAALFGPDTPDKKDS 115
Query: 105 LGPPSGRNIFRFKSETRRSLHSLSPFGFDDDVASGVSHSPVKAPRKVPRSPYKILDAPAL 164
LG P+ RNIFR+K+ET+RSLHSLSPFG D+ V G+ HSPVKAPRKVPRSPYK+LDAPAL
Sbjct: 116 LGSPACRNIFRYKTETKRSLHSLSPFGLDESVP-GIIHSPVKAPRKVPRSPYKVLDAPAL 174
Query: 165 QDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA 224
QDDFYLNLVDWSS+NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWA R THLA
Sbjct: 175 QDDFYLNLVDWSSNNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHLA 234
Query: 225 VGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFV 284
VGTS+GKVQIWDASRC+R+RTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQ+DF
Sbjct: 235 VGTSNGKVQIWDASRCRRIRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQDDFA 294
Query: 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPH 344
SKLSGHKSEVCGLKWSYDNRELASGGNDN+LFVWNQHSTQPVLKYC+HTAAVKAIAWSPH
Sbjct: 295 SKLSGHKSEVCGLKWSYDNRELASGGNDNKLFVWNQHSTQPVLKYCDHTAAVKAIAWSPH 354
Query: 345 LHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQII 404
LHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQII
Sbjct: 355 LHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQII 414
Query: 405 VWRYPTMSKV 414
VWRYPTMSK+
Sbjct: 415 VWRYPTMSKL 424
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537225|ref|XP_002509679.1| WD-repeat protein, putative [Ricinus communis] gi|223549578|gb|EEF51066.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/431 (81%), Positives = 376/431 (87%), Gaps = 29/431 (6%)
Query: 9 QLNLPPTM-----SLQPLTPPSDHISRMINANHHQSPSRAIYSDRFIPSRSSSNFDLFNI 63
QLN+P TM +L+ LT SDH++RMIN++H+ SPSR IYSDRFIPSRSSSNF LFNI
Sbjct: 59 QLNVPKTMPRPLLNLETLTS-SDHVTRMINSHHYISPSRMIYSDRFIPSRSSSNFALFNI 117
Query: 64 S-----------------QPSPNSPAVTD---SHKDDNSGTYTALLRAALFGPETPEKKD 103
S + NSPA D K+D+S Y ALLR ALFGP TP+K++
Sbjct: 118 SFSSSSSSSSSPSPPPPSSAAGNSPAAADCGGGGKEDSSSAYAALLRIALFGPNTPDKRN 177
Query: 104 VLGPPSGRNIFRFKSETRRSLHSLSPFGFDDDVASGVSHSPVKAPRKVPRSPYKILDAPA 163
P GRNIFRFKSETR+S+HSLSPFGFD++ GVSHSPVK PRKVPRSPYK+LDAPA
Sbjct: 178 --SPSPGRNIFRFKSETRQSMHSLSPFGFDEE-RPGVSHSPVKTPRKVPRSPYKVLDAPA 234
Query: 164 LQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHL 223
LQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWA R THL
Sbjct: 235 LQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHL 294
Query: 224 AVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDF 283
AVGTS+GKVQIWDASRCKRVRTMEGHRLR+GALAWSSSLLSSGSRDKSILQRDIRAQEDF
Sbjct: 295 AVGTSNGKVQIWDASRCKRVRTMEGHRLRIGALAWSSSLLSSGSRDKSILQRDIRAQEDF 354
Query: 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343
VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP
Sbjct: 355 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 414
Query: 344 HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQI 403
HLHGLLASGGGTADRCIRFWNTTTN+HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQI
Sbjct: 415 HLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQI 474
Query: 404 IVWRYPTMSKV 414
IVWRYPTMSK+
Sbjct: 475 IVWRYPTMSKL 485
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224071678|ref|XP_002303555.1| predicted protein [Populus trichocarpa] gi|222840987|gb|EEE78534.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/432 (79%), Positives = 374/432 (86%), Gaps = 18/432 (4%)
Query: 1 MDDPTESP----QLNLPPT--------MSLQPLTPP---SDHISRMINANHHQSPSRAIY 45
M DPT SP QLN+ + ++L+ L P S+H++R+IN+NH+ SPSR IY
Sbjct: 1 MADPTMSPPNQSQLNVAASTTQRRQHHLNLESLAPSPSSSEHVNRLINSNHYISPSRPIY 60
Query: 46 SDRFIPSRSSSNFDLFNISQPSPNSPAVT---DSHKDDNSGTYTALLRAALFGPETPEKK 102
SDRFIP RSSSNF LFNIS PSP++ A + D K+DN Y ALLR ALFGP+TP+KK
Sbjct: 61 SDRFIPCRSSSNFALFNISLPSPSATAGSSPGDGGKEDNPNAYAALLRNALFGPQTPDKK 120
Query: 103 DVLGPPSGRNIFRFKSETRRSLHSLSPFGFDDDVASGVSHSPVKAPRKVPRSPYKILDAP 162
D +GRNIFR+K+ETR+S+HSLSPFGFD GVS+ +KAPRKV RSPYK+LDAP
Sbjct: 121 DWGTGAAGRNIFRYKTETRQSMHSLSPFGFDGLSGPGVSNVAIKAPRKVSRSPYKVLDAP 180
Query: 163 ALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTH 222
AL DDFYLNLVDWSSHNVLAVGLG CVYLWNACSSKVTKLCDLG DD VCSVGWA+R TH
Sbjct: 181 ALHDDFYLNLVDWSSHNVLAVGLGTCVYLWNACSSKVTKLCDLGNDDGVCSVGWAHRGTH 240
Query: 223 LAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQED 282
LAVGTS+GKVQIWDASRCKR+R MEGHRLRVGALAWSSS+LSSGSRDKSILQRDIRAQED
Sbjct: 241 LAVGTSNGKVQIWDASRCKRIRIMEGHRLRVGALAWSSSMLSSGSRDKSILQRDIRAQED 300
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS
Sbjct: 301 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 360
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
PHLHGLLASGGGTADRCIRFWNTTTN+HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ
Sbjct: 361 PHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 420
Query: 403 IIVWRYPTMSKV 414
IIVWRYPTMSK+
Sbjct: 421 IIVWRYPTMSKL 432
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297803828|ref|XP_002869798.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297315634|gb|EFH46057.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/414 (79%), Positives = 356/414 (85%), Gaps = 9/414 (2%)
Query: 1 MDDPTESPQLNLPPTMSLQPLTPPSDHISRMINANHHQSPSRAIYSDRFIPSRSSSNFDL 60
+ + S NL P M+ P+ I+R+INAN QSPSR+IYSDRFIPSRS SNF L
Sbjct: 12 ITNSNSSSHRNLSPAMN-TPVVSLESRINRLINANQSQSPSRSIYSDRFIPSRSGSNFAL 70
Query: 61 FNISQPSPNSPAVTDSHKDDNSGTYTALLRAALFGPETPEKKDVLGPPSGRNIFRFKSET 120
F++S PSP+ K+D +G+Y LLRAA+FGPETPEK+D+ G S RNIFRFK+ET
Sbjct: 71 FDLS-PSPSKDG-----KEDGAGSYATLLRAAMFGPETPEKRDITGFSSSRNIFRFKTET 124
Query: 121 RRSLHSLSPFGFDDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNV 180
RSL+S SPFG DD + GV HSPVKAPRKV RSPYK+LDAPALQDDFYLNLVDWS+ NV
Sbjct: 125 HRSLNSFSPFGVDD--SPGVCHSPVKAPRKVQRSPYKVLDAPALQDDFYLNLVDWSAQNV 182
Query: 181 LAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240
LAVGLGNCVYLWNACSSKVTKLCDLG +DSVCSVGWA R THLAVGTS GKVQIWDASRC
Sbjct: 183 LAVGLGNCVYLWNACSSKVTKLCDLGAEDSVCSVGWALRGTHLAVGTSTGKVQIWDASRC 242
Query: 241 KRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS 300
KR RTMEGHRLRVGALAW SS+LSSGSRDKSILQRDIR QED VSKL+GHKSEVCGLKWS
Sbjct: 243 KRTRTMEGHRLRVGALAWGSSVLSSGSRDKSILQRDIRCQEDHVSKLTGHKSEVCGLKWS 302
Query: 301 YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360
YDNRELASGGNDNRLFVWNQHSTQPVLKY EHTAAVKAIAWSPH+HGLLASGGGTADRCI
Sbjct: 303 YDNRELASGGNDNRLFVWNQHSTQPVLKYSEHTAAVKAIAWSPHVHGLLASGGGTADRCI 362
Query: 361 RFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
RFWNTTTNTHLS +DT SQVCNL WSKNVNELVSTHGYSQNQIIVW+YPTMSK+
Sbjct: 363 RFWNTTTNTHLSSIDTCSQVCNLAWSKNVNELVSTHGYSQNQIIVWKYPTMSKI 416
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426730|ref|XP_002275649.1| PREDICTED: protein FIZZY-RELATED 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/442 (77%), Positives = 372/442 (84%), Gaps = 33/442 (7%)
Query: 1 MDDPT-----------ESPQLNLPPTMSLQPLT----PPSDHISRMINANHHQSPSRAIY 45
MDDPT S LNLP TMS PL+ PS HI RMI+ + SPSR IY
Sbjct: 1 MDDPTTPSTTNQSALRSSSGLNLPSTMSKTPLSLEPVTPSTHIERMISVGYQPSPSRTIY 60
Query: 46 SDRFIPSRSSSNFDLFNISQPSPNSPAVTDSHKDDNSGTYTALLRAALFGPE-------T 98
SDRFIPSR+ SNF LF+IS P NSPA ++D SG Y LLR ALFGP+ T
Sbjct: 61 SDRFIPSRTGSNFALFDIS-PLANSPA---EGREDGSGAYATLLRTALFGPDAGVCSPGT 116
Query: 99 PEK------KDVLGPPSGRNIFRFKSETRRSLHSLSPFGFDDDVASGVSHSPVKAPRKVP 152
P+K K+ PS RNIFR+K+ETR+S+HSLSPFGF+D + GVSH PVKA RKVP
Sbjct: 117 PDKLMRLDGKNSSVYPSSRNIFRYKTETRQSMHSLSPFGFEDALP-GVSHGPVKAARKVP 175
Query: 153 RSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVC 212
RSPYK+LDAPALQDDFYLNLVDWS+HNVLAVGLGNCVYLWNACSSKVTKLCDLG+D SVC
Sbjct: 176 RSPYKVLDAPALQDDFYLNLVDWSAHNVLAVGLGNCVYLWNACSSKVTKLCDLGMDVSVC 235
Query: 213 SVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSI 272
SVGWA R THLAVGTS+GK+QIWDASRCKRVRTMEGHRLR+GALAWSSS+LSSGSRDK+I
Sbjct: 236 SVGWAQRGTHLAVGTSNGKLQIWDASRCKRVRTMEGHRLRIGALAWSSSMLSSGSRDKTI 295
Query: 273 LQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH 332
LQRDIRAQ+DFV+KL+GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH
Sbjct: 296 LQRDIRAQDDFVNKLAGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH 355
Query: 333 TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNEL 392
TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN+HLSCMDTGSQVCNLVWSKNVNEL
Sbjct: 356 TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNEL 415
Query: 393 VSTHGYSQNQIIVWRYPTMSKV 414
VSTHGYSQNQIIVWRYPTMSK+
Sbjct: 416 VSTHGYSQNQIIVWRYPTMSKL 437
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224058623|ref|XP_002299571.1| predicted protein [Populus trichocarpa] gi|222846829|gb|EEE84376.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/398 (82%), Positives = 356/398 (89%), Gaps = 3/398 (0%)
Query: 20 PLTPPSDHISRMINANHHQSPSRAIYSDRFIPSRSSSNFDLFNISQPSPNSPAVTD---S 76
P S H++R+IN+NH+ SPSR IYSDRFIP RSSSNF LFNIS P P++ A
Sbjct: 31 PSPSSSKHVNRLINSNHYISPSRPIYSDRFIPCRSSSNFALFNISFPQPSATAGISPGCG 90
Query: 77 HKDDNSGTYTALLRAALFGPETPEKKDVLGPPSGRNIFRFKSETRRSLHSLSPFGFDDDV 136
K+DN Y ALLR ALFGP+TP+KKD +G+NIFR+K ETR+SLHSLSPFGFDD
Sbjct: 91 GKEDNPSAYAALLRNALFGPQTPDKKDWGAGAAGQNIFRYKMETRQSLHSLSPFGFDDMS 150
Query: 137 ASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACS 196
GVS+ +K PRKV RSPYK+LDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACS
Sbjct: 151 DLGVSNVAIKTPRKVSRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACS 210
Query: 197 SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGAL 256
SKVTKLCDLG DD VCSVGWA+R THLA+GTS+GKVQIWDASRCKR+RTMEGHRLRVGAL
Sbjct: 211 SKVTKLCDLGNDDGVCSVGWAHRGTHLAIGTSNGKVQIWDASRCKRIRTMEGHRLRVGAL 270
Query: 257 AWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316
AWSSS+LSSGSRDKSILQRDIRA+EDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF
Sbjct: 271 AWSSSMLSSGSRDKSILQRDIRAREDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 330
Query: 317 VWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT 376
VWNQHS+QPVLKYC+HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN+HLSC+DT
Sbjct: 331 VWNQHSSQPVLKYCDHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCIDT 390
Query: 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
GSQVCNLVWSKNVNELVSTHGYSQNQII+WRYPTMSK+
Sbjct: 391 GSQVCNLVWSKNVNELVSTHGYSQNQIILWRYPTMSKL 428
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452504|ref|XP_004143999.1| PREDICTED: LOW QUALITY PROTEIN: protein FIZZY-RELATED 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/421 (81%), Positives = 362/421 (85%), Gaps = 24/421 (5%)
Query: 9 QLNLPPTMS-----LQPLTPPSDHISRMINANHHQSPSRAIYSDRFIPSRSSSNFDLFNI 63
QLNLP +MS L+ LTP S I RMIN NHH SPSRAIYSDRFIPSRS SNF LF+I
Sbjct: 53 QLNLPSSMSRASHSLETLTP-SRQIDRMININHHLSPSRAIYSDRFIPSRSGSNFALFDI 111
Query: 64 SQPSPNSPAVTDSHKD---DNSGTYTALLRAALFGPE-------TPEKKDVLGPPSGRNI 113
S V++SH D D S Y LLR ALFGP+ TPEK+ NI
Sbjct: 112 S-------PVSNSHSDGREDTSTAYATLLRTALFGPDSGVIPPATPEKRSSPMCLPNHNI 164
Query: 114 FRFKSETRRSLHSLSPFGFDDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLV 173
FR+K+ETRRS+HSLSPFGFD A G++ SPVK PRKVPRSPYK+LDAPALQDDFYLNLV
Sbjct: 165 FRYKTETRRSMHSLSPFGFDA-AAPGLNPSPVKTPRKVPRSPYKVLDAPALQDDFYLNLV 223
Query: 174 DWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQ 233
DWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWA R THLAVGTS+GKVQ
Sbjct: 224 DWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAVGTSNGKVQ 283
Query: 234 IWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSE 293
IWDASRCKRVRTMEGHRLR+GALAWSSSLLSSGSRDKSILQRDIRAQ+DFV+KLSGHKSE
Sbjct: 284 IWDASRCKRVRTMEGHRLRIGALAWSSSLLSSGSRDKSILQRDIRAQDDFVTKLSGHKSE 343
Query: 294 VCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353
VCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK+ EHTAAVKAIAWSPHLHGLLASGG
Sbjct: 344 VCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKFYEHTAAVKAIAWSPHLHGLLASGG 403
Query: 354 GTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413
GTADRCIRFWNTTTNTHLSCMDTGSQVCNL WSKNVNELVSTHG+SQNQIIVWRYPTMSK
Sbjct: 404 GTADRCIRFWNTTTNTHLSCMDTGSQVCNLAWSKNVNELVSTHGFSQNQIIVWRYPTMSK 463
Query: 414 V 414
+
Sbjct: 464 L 464
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449530095|ref|XP_004172032.1| PREDICTED: LOW QUALITY PROTEIN: protein FIZZY-RELATED 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/418 (81%), Positives = 362/418 (86%), Gaps = 18/418 (4%)
Query: 9 QLNLPPTMS-----LQPLTPPSDHISRMINANHHQSPSRAIYSDRFIPSRSSSNFDLFNI 63
QLNLP +MS L+ LTP S I RMIN NHH SPSRAIYSDRFIPSRS SNF LF+I
Sbjct: 32 QLNLPSSMSRASHSLETLTP-SRQIDRMININHHLSPSRAIYSDRFIPSRSGSNFALFDI 90
Query: 64 SQPSPNSPAVTDSHKDDNSGTYTALLRAALFGPE-------TPEKKDVLGPPSGRNIFRF 116
S P S + +D ++D S Y LLR ALFGP+ TPEK+ NIFR+
Sbjct: 91 S---PVSTSHSDG-REDTSTAYATLLRTALFGPDSGVIPPATPEKRSSPMCLPNHNIFRY 146
Query: 117 KSETRRSLHSLSPFGFDDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWS 176
K+ETRRS+HSLSPFGFD A G++ SPVK PRKVPRSPYK+LDAPALQDDFYLNLVDWS
Sbjct: 147 KTETRRSMHSLSPFGFDA-AAPGLNPSPVKTPRKVPRSPYKVLDAPALQDDFYLNLVDWS 205
Query: 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWD 236
SHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWA R THLAVGTS+GKVQIWD
Sbjct: 206 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAVGTSNGKVQIWD 265
Query: 237 ASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCG 296
ASRCKRVRTMEGHRLR+GALAWSSSLLSSGSRDKSILQRDIRAQ+DFV+KLSGHKSEVCG
Sbjct: 266 ASRCKRVRTMEGHRLRIGALAWSSSLLSSGSRDKSILQRDIRAQDDFVTKLSGHKSEVCG 325
Query: 297 LKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTA 356
LKWSYDNRELASGGNDNRLFVWNQHSTQPVLK+ EHTAAVKAIAWSPHLHGLLASGGGTA
Sbjct: 326 LKWSYDNRELASGGNDNRLFVWNQHSTQPVLKFYEHTAAVKAIAWSPHLHGLLASGGGTA 385
Query: 357 DRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
DRCI FWNTTTNTHLSCMDTGSQVCNL WSKNVNELVSTHG+SQNQIIVWRYPTMSK+
Sbjct: 386 DRCIXFWNTTTNTHLSCMDTGSQVCNLAWSKNVNELVSTHGFSQNQIIVWRYPTMSKL 443
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4558462|gb|AAD22612.1| cell cycle switch protein [Medicago sativa subsp. x varia] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/397 (81%), Positives = 352/397 (88%), Gaps = 21/397 (5%)
Query: 27 HISRMINANHHQSPSRAIYSDRFIPSRSSSNFDLFNISQPSPNSPAVTDSHKDDNSGTYT 86
H+SRMIN+NH+ SPSR IYSDRFIPSRS+S F LF+I+ P+ +DD+S YT
Sbjct: 31 HVSRMINSNHYTSPSRTIYSDRFIPSRSASKFALFDINTPTEG--------RDDSSSAYT 82
Query: 87 ALLRAALFGPE-----TPEKKDVLGPPS----GRNIFRFKSETRRSLHSLSPFGFDDDVA 137
LLR ALFGP+ TPEK D PS RNIFR+K+ETR+S+HSLSPF DDD
Sbjct: 83 TLLRTALFGPDVAGPVTPEKTD---SPSMTLPNRNIFRYKTETRQSMHSLSPF-MDDDFV 138
Query: 138 SGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSS 197
GV+HSPVKAPRKVPRSPYK+LDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSS
Sbjct: 139 PGVNHSPVKAPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSS 198
Query: 198 KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALA 257
KVTKLCDLG+DD VCSVGWA R THLAVGT++GKVQIWDA+RCK++R+MEGHRLRVGALA
Sbjct: 199 KVTKLCDLGVDDCVCSVGWAQRGTHLAVGTNNGKVQIWDAARCKKIRSMEGHRLRVGALA 258
Query: 258 WSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317
WSSSLLSSG RDK+I QRDIR QEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN+LFV
Sbjct: 259 WSSSLLSSGGRDKNIYQRDIRTQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNKLFV 318
Query: 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG 377
WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN+HLSCMDTG
Sbjct: 319 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTG 378
Query: 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK+
Sbjct: 379 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKL 415
|
Source: Medicago sativa subsp. x varia Species: Medicago sativa Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565305|ref|XP_003550882.1| PREDICTED: protein FIZZY-RELATED 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/415 (80%), Positives = 357/415 (86%), Gaps = 21/415 (5%)
Query: 7 SPQLNLPPTMSLQPLTPPSDHISRMINANHHQSPSRAIYSDRFIPSRSSSNFDLFNISQP 66
S LN+PP S L H+ RMIN+NH+ SPSR IYSDRFIPSRS+S F LFNI+ P
Sbjct: 5 SGHLNIPPAASAATLR----HVDRMINSNHYTSPSRTIYSDRFIPSRSASKFALFNIASP 60
Query: 67 SPNSPAVTDSHKDDNSGTYTALLRAALFGPE-----TPEKKD--VLGPPSGRNIFRFKSE 119
+DD+S YT LLR ALFGP+ TPEK + PS RNIFR+K+E
Sbjct: 61 PEG--------RDDSSSAYTTLLRTALFGPDFAPPPTPEKTASPAMTLPS-RNIFRYKTE 111
Query: 120 TRRSLHSLSPFGFDDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHN 179
TR+S+HSLSPF +D V GV H PVKAPRKVPRSP+K+LDAPALQDDFYLNLVDWSSHN
Sbjct: 112 TRQSMHSLSPFMCEDSVP-GVVHGPVKAPRKVPRSPFKVLDAPALQDDFYLNLVDWSSHN 170
Query: 180 VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR 239
VLAVGLGNCVYLWNACSSKVTKLCDLGIDD VCSVGWA R THLAVGTS+GKVQIWDASR
Sbjct: 171 VLAVGLGNCVYLWNACSSKVTKLCDLGIDDLVCSVGWAQRGTHLAVGTSNGKVQIWDASR 230
Query: 240 CKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKW 299
CK++R++EGHRLRVGALAWSSSLLSSG RDK+I QRDIRAQEDFVSKLSGHKSEVCGLKW
Sbjct: 231 CKKIRSLEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRAQEDFVSKLSGHKSEVCGLKW 290
Query: 300 SYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC 359
SYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC
Sbjct: 291 SYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC 350
Query: 360 IRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
IRFWNTTTN+HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK+
Sbjct: 351 IRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKL 405
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 415 | ||||||
| TAIR|locus:2127263 | 483 | FZR2 "AT4G22910" [Arabidopsis | 0.963 | 0.828 | 0.770 | 1e-169 | |
| TAIR|locus:2137030 | 475 | CCS52A2 "AT4G11920" [Arabidops | 0.959 | 0.837 | 0.735 | 1.2e-163 | |
| TAIR|locus:2159078 | 481 | FZR3 "AT5G13840" [Arabidopsis | 0.954 | 0.823 | 0.561 | 1.5e-120 | |
| ZFIN|ZDB-GENE-040426-712 | 495 | fzr1 "fizzy/cell division cycl | 0.942 | 0.789 | 0.510 | 3e-101 | |
| UNIPROTKB|Q9UM11 | 496 | FZR1 "Fizzy-related protein ho | 0.932 | 0.780 | 0.504 | 4.4e-100 | |
| UNIPROTKB|Q32L05 | 493 | FZR1 "Uncharacterized protein" | 0.932 | 0.784 | 0.504 | 5.6e-100 | |
| UNIPROTKB|Q5H7B9 | 493 | FZR1 "Uncharacterized protein" | 0.932 | 0.784 | 0.504 | 5.6e-100 | |
| UNIPROTKB|E2R4Z3 | 496 | FZR1 "Uncharacterized protein" | 0.932 | 0.780 | 0.504 | 5.6e-100 | |
| MGI|MGI:1926790 | 493 | Fzr1 "fizzy/cell division cycl | 0.932 | 0.784 | 0.502 | 1.5e-99 | |
| FB|FBgn0262699 | 478 | rap "retina aberrant in patter | 0.893 | 0.776 | 0.511 | 1e-98 |
| TAIR|locus:2127263 FZR2 "AT4G22910" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1650 (585.9 bits), Expect = 1.0e-169, P = 1.0e-169
Identities = 319/414 (77%), Positives = 344/414 (83%)
Query: 7 SPQLNLPPTMSLQPLTPPSDHISRMINANHHQSPS-----RAIYSDRFIPSRSSSNFDLF 61
S NL P M+ P+ I+R+INAN QSPS R+IYSDRFIPSRS SNF LF
Sbjct: 18 SSMRNLSPAMNT-PVVSLESRINRLINANQSQSPSPSSLSRSIYSDRFIPSRSGSNFALF 76
Query: 62 NISQPSPNSPAVTDSHKDDNSGTYTALLRAALFGPETPEKKDVLGPPSGRNIFRFKSETR 121
++S PSP+ K+D +G+Y LLRAA+FGPETPEK+D+ G S RNIFRFK+ET
Sbjct: 77 DLS-PSPSKDG-----KEDGAGSYATLLRAAMFGPETPEKRDITGFSSSRNIFRFKTETH 130
Query: 122 RSLHSLSPFGFDDDVASGVSHS-PVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNV 180
RSL+S SPFG DDD + GVSHS PVKAPRKVPRSPYK+LDAPALQDDFYLNLVDWS+ NV
Sbjct: 131 RSLNSFSPFGVDDD-SPGVSHSGPVKAPRKVPRSPYKVLDAPALQDDFYLNLVDWSAQNV 189
Query: 181 LAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240
LAVGLGNCVYLWNACSSKVTKLCDLG +DSVCSVGWA R THLAVGTS GKVQIWDASRC
Sbjct: 190 LAVGLGNCVYLWNACSSKVTKLCDLGAEDSVCSVGWALRGTHLAVGTSTGKVQIWDASRC 249
Query: 241 KRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS 300
KR RTMEGHRLRV RDKSILQRDIR QED VSKL+GHKSEVCGLKWS
Sbjct: 250 KRTRTMEGHRLRVGALAWGSSVLSSGSRDKSILQRDIRCQEDHVSKLAGHKSEVCGLKWS 309
Query: 301 YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360
YDNRELASGGNDNRLFVWNQHSTQPVLKY EHTAAVKAIAWSPH+HGLLASGGGTADRCI
Sbjct: 310 YDNRELASGGNDNRLFVWNQHSTQPVLKYSEHTAAVKAIAWSPHVHGLLASGGGTADRCI 369
Query: 361 RFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
RFWNTTTNTHLS +DT SQVCNL WSKNVNELVSTHGYSQNQIIVW+YPTMSK+
Sbjct: 370 RFWNTTTNTHLSSIDTCSQVCNLAWSKNVNELVSTHGYSQNQIIVWKYPTMSKI 423
|
|
| TAIR|locus:2137030 CCS52A2 "AT4G11920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1593 (565.8 bits), Expect = 1.2e-163, P = 1.2e-163
Identities = 300/408 (73%), Positives = 338/408 (82%)
Query: 9 QLNLPPTMSLQPLTPPSDHISRMINANHHQSPSRAIYSDRFIPSRSSSNFDLFNISQPSP 68
QLNLPP+M+ +P I+R+I++NH+ SPS+ IYSDRFIPSRS SNF LF+++ SP
Sbjct: 16 QLNLPPSMN-RPTVSLESRINRLIDSNHYHSPSKPIYSDRFIPSRSGSNFALFDLASSSP 74
Query: 69 NSPAVTDSHKDDNSGTYTALLRAALFGPETPEKKDVLG--PPSGRNIFRFKSETRRSLHS 126
N D K+D +G+Y +LL+ ALFGP TPEK DV+ PSG NIFRFK+ET+RSL+
Sbjct: 75 NKK---DG-KEDGAGSYASLLKTALFGPVTPEKSDVVNGFSPSG-NIFRFKTETQRSLNL 129
Query: 127 LSPFGFDDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLG 186
PF D DV SGVS SPVK+PRK+ RSPYK+LDAPALQDDFYLNLVDWS+ NVLAVGLG
Sbjct: 130 YPPF--DSDVVSGVSPSPVKSPRKILRSPYKVLDAPALQDDFYLNLVDWSAQNVLAVGLG 187
Query: 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246
NCVYLWNACSSKVTKLCDLG+D++VCSVGWA R THLA+GTS G VQIWD RCK +RTM
Sbjct: 188 NCVYLWNACSSKVTKLCDLGVDETVCSVGWALRGTHLAIGTSSGTVQIWDVLRCKNIRTM 247
Query: 247 EGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306
EGHRLRV RDKSILQRDIR QED VSKL GHKSE+CGLKWS DNREL
Sbjct: 248 EGHRLRVGALAWSSSVLSSGSRDKSILQRDIRTQEDHVSKLKGHKSEICGLKWSSDNREL 307
Query: 307 ASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366
ASGGNDN+LFVWNQHSTQPVL++CEH AAVKAIAWSPH GLLASGGGTADRCIRFWNTT
Sbjct: 308 ASGGNDNKLFVWNQHSTQPVLRFCEHAAAVKAIAWSPHHFGLLASGGGTADRCIRFWNTT 367
Query: 367 TNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
TNTHL+C+DT SQVCNLVWSKNVNELVSTHGYSQNQIIVW+YPTMSK+
Sbjct: 368 TNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIVWKYPTMSKL 415
|
|
| TAIR|locus:2159078 FZR3 "AT5G13840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1186 (422.6 bits), Expect = 1.5e-120, P = 1.5e-120
Identities = 236/420 (56%), Positives = 288/420 (68%)
Query: 10 LNLPPTMSLQPLTPPSDHISRMINANHHQSPSRAIYSDRFIPSRSSSNFDLFNISQPSPN 69
LNLP M+ L + S + SPS++ SDRFIP RSSS F++ P
Sbjct: 11 LNLPAGMNQTSLRLET-FSSSFRGISSLSSPSKSTCSDRFIPCRSSSRLHAFDLQDKEPT 69
Query: 70 SPAVTDSHKDDNSGTYTALLRAALFGPETPEKKDVLGPPSGR-----------NIFRFKS 118
+P K+ + Y+ LL++ LFG + +L P G+ N+ RFK+
Sbjct: 70 TPV-----KEGGNEAYSRLLKSELFGSDFASP--LLSPAGGQGSASSPMSPCTNMLRFKT 122
Query: 119 ETRRSLHSLSPFG----FDDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVD 174
+ S S SPF +D+ S S P K PRKVP++P+K+LDAP+LQDDFYLN+VD
Sbjct: 123 DRSNSSPS-SPFSPSILGNDNGHSSDSSPPPKPPRKVPKTPHKVLDAPSLQDDFYLNVVD 181
Query: 175 WSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQI 234
WSS NVLAVGLG CVYLW A +SKVTKLCDLG +DSVCSV W +++++GTSHG+VQ+
Sbjct: 182 WSSQNVLAVGLGTCVYLWTASNSKVTKLCDLGPNDSVCSVQWTREGSYISIGTSHGQVQV 241
Query: 235 WDASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEV 294
WD ++CKRVRTM GH+ R RD++ILQ DIR Q DFVSKL GHKSEV
Sbjct: 242 WDGTQCKRVRTMGGHQTRTGVLAWNSRILSSGSRDRNILQHDIRVQSDFVSKLVGHKSEV 301
Query: 295 CGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGG 354
CGLKWS+D+RELASGGNDN+L VWN HS QP+LK EHTAAVKAI WSPH LLASGGG
Sbjct: 302 CGLKWSHDDRELASGGNDNQLLVWNNHSQQPILKLTEHTAAVKAITWSPHQSSLLASGGG 361
Query: 355 TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
TADRCIRFWNTT L+ +DTGSQVCNL WSKNVNE+VSTHGYSQNQI++W+YP+MSKV
Sbjct: 362 TADRCIRFWNTTNGNQLNSIDTGSQVCNLAWSKNVNEIVSTHGYSQNQIMLWKYPSMSKV 421
|
|
| ZFIN|ZDB-GENE-040426-712 fzr1 "fizzy/cell division cycle 20 related 1 (Drosophila)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
Identities = 215/421 (51%), Positives = 269/421 (63%)
Query: 11 NLPPTMSLQPLTPPSDHISRMINANHHQSPSRA--IYSDRFIPSRSSSNFDLFNISQPSP 68
+L PT PL+ PS H R I PSRA +S F R + N + SQ
Sbjct: 31 HLTPTPE-SPLSSPSKHGDRFI-------PSRAGANWSINF--HRINENEK--SPSQNKK 78
Query: 69 NSPAVTDSHKDDNSGTYTALLRAALFG--------PETPEKKDVLGPPSGRNIFRFKSET 120
A +DS K D Y+ALL+ L G P+T +++ P R++F +
Sbjct: 79 TKDATSDSGKADGLA-YSALLKNELLGAGIEKVLDPQTEDRRLQPSTPERRSLFSYSLSA 137
Query: 121 RRSL---HSLSPFGFD--DDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDW 175
+RS +S+SP+ + + SP K RK+ + P+K+LDAP LQDDFYLNLVDW
Sbjct: 138 KRSTPDDNSVSPYSLSPVSSKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDW 197
Query: 176 SSHNVLAVGLGNCVYLWNACSSKVTKLCDLGID-DSVCSVGWANRNTHLAVGTSHGKVQI 234
SS NVL+VGLG CVYLW+AC+S+VT+LCDL ++ DSV SVGW+ R +AVGT G VQI
Sbjct: 198 SSLNVLSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQI 257
Query: 235 WDASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQE-DFVSKLSGHKSE 293
WDA+ K++ +EGH RV RD+ ILQRDIR +L GH+ E
Sbjct: 258 WDATAGKKLFALEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQE 317
Query: 294 VCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353
VCGLKWS D++ LASGGNDN+L VWN S P+ +Y EH AAVKAIAWSPH HGLLASGG
Sbjct: 318 VCGLKWSTDHQLLASGGNDNKLLVWNHSSVLPMQQYTEHLAAVKAIAWSPHQHGLLASGG 377
Query: 354 GTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413
GTADRCIRFWNT T L C+DTGSQVCNL WSK+ NELVSTHGYSQNQI+VW+YP++++
Sbjct: 378 GTADRCIRFWNTLTAQPLQCIDTGSQVCNLAWSKHTNELVSTHGYSQNQILVWKYPSLTQ 437
Query: 414 V 414
V
Sbjct: 438 V 438
|
|
| UNIPROTKB|Q9UM11 FZR1 "Fizzy-related protein homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
Identities = 211/418 (50%), Positives = 268/418 (64%)
Query: 15 TMSLQPLTPPSDHISRMINANHHQSPSRA--IYSDRFIPSRSSSNFDLFNISQPSPNSPA 72
T + P++ PS H R I PSRA +S F R + N + SQ A
Sbjct: 32 TPASSPVSSPSKHGDRFI-------PSRAGANWSVNF--HRINENEK--SPSQNRKAKDA 80
Query: 73 VTDSHKDDNSGTYTALLRAALFG--------PETPEKKDVLGPPSGRNIFRFKSETRRSL 124
+D+ KD + Y+ALL+ L G P+T +++ P + +F + T+RS
Sbjct: 81 TSDNGKDGLA--YSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEKKGLFTYSLSTKRSS 138
Query: 125 ----HSLSPFGFD--DDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSH 178
+ +SP+ + + + SP K RK+ + P+K+LDAP LQDDFYLNLVDWSS
Sbjct: 139 PDDGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSL 198
Query: 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGID-DSVCSVGWANRNTHLAVGTSHGKVQIWDA 237
NVL+VGLG CVYLW+AC+S+VT+LCDL ++ DSV SVGW+ R +AVGT G VQIWDA
Sbjct: 199 NVLSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDA 258
Query: 238 SRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQE-DFVSKLSGHKSEVCG 296
+ K++ +EGH RV RD+ ILQRDIR +L GH+ EVCG
Sbjct: 259 AAGKKLSMLEGHTARVGALAWNAEQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCG 318
Query: 297 LKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTA 356
LKWS D++ LASGGNDN+L VWN S PV +Y EH AAVKAIAWSPH HGLLASGGGTA
Sbjct: 319 LKWSTDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTA 378
Query: 357 DRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
DRCIRFWNT T L C+DTGSQVCNL WSK+ NELVSTHGYSQNQI+VW+YP++++V
Sbjct: 379 DRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQV 436
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| UNIPROTKB|Q32L05 FZR1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
Identities = 211/418 (50%), Positives = 268/418 (64%)
Query: 15 TMSLQPLTPPSDHISRMINANHHQSPSRA--IYSDRFIPSRSSSNFDLFNISQPSPNSPA 72
T + P++ PS H R I PSRA +S F R + N + SQ A
Sbjct: 32 TPANSPVSSPSKHGDRFI-------PSRAGANWSVNF--HRINENEK--SPSQNRKAKDA 80
Query: 73 VTDSHKDDNSGTYTALLRAALFG--------PETPEKKDVLGPPSGRNIFRFKSETRRSL 124
+D+ KD + Y+ALL+ L G P+T +++ P + +F + T+RS
Sbjct: 81 TSDNGKDGLA--YSALLKNELLGAGIEKVQDPQTEDRRLQPSTPERKGLFTYSLSTKRSS 138
Query: 125 ----HSLSPFGFD--DDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSH 178
+ +SP+ + + + SP K RK+ + P+K+LDAP LQDDFYLNLVDWSS
Sbjct: 139 PDDGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSL 198
Query: 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGID-DSVCSVGWANRNTHLAVGTSHGKVQIWDA 237
NVL+VGLG CVYLW+AC+S+VT+LCDL ++ DSV SVGW+ R +AVGT G VQIWDA
Sbjct: 199 NVLSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDA 258
Query: 238 SRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQE-DFVSKLSGHKSEVCG 296
+ K++ +EGH RV RD+ ILQRDIR +L GH+ EVCG
Sbjct: 259 AAGKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCG 318
Query: 297 LKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTA 356
LKWS D++ LASGGNDN+L VWN S PV +Y EH AAVKAIAWSPH HGLLASGGGTA
Sbjct: 319 LKWSTDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTA 378
Query: 357 DRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
DRCIRFWNT T L C+DTGSQVCNL WSK+ NELVSTHGYSQNQI+VW+YP++++V
Sbjct: 379 DRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQV 436
|
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| UNIPROTKB|Q5H7B9 FZR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
Identities = 211/418 (50%), Positives = 268/418 (64%)
Query: 15 TMSLQPLTPPSDHISRMINANHHQSPSRA--IYSDRFIPSRSSSNFDLFNISQPSPNSPA 72
T + P++ PS H R I PSRA +S F R + N + SQ A
Sbjct: 32 TPANSPVSSPSKHGDRFI-------PSRAGANWSVNF--HRINENEK--SPSQNRKAKDA 80
Query: 73 VTDSHKDDNSGTYTALLRAALFG--------PETPEKKDVLGPPSGRNIFRFKSETRRSL 124
+D+ KD + Y+ALL+ L G P+T +++ P + +F + T+RS
Sbjct: 81 TSDNGKDGLA--YSALLKNELLGAGIEKVQDPQTEDRRLQPSTPERKGLFTYSLSTKRSS 138
Query: 125 ----HSLSPFGFD--DDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSH 178
+ +SP+ + + + SP K RK+ + P+K+LDAP LQDDFYLNLVDWSS
Sbjct: 139 PDDGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSL 198
Query: 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGID-DSVCSVGWANRNTHLAVGTSHGKVQIWDA 237
NVL+VGLG CVYLW+AC+S+VT+LCDL ++ DSV SVGW+ R +AVGT G VQIWDA
Sbjct: 199 NVLSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDA 258
Query: 238 SRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQE-DFVSKLSGHKSEVCG 296
+ K++ +EGH RV RD+ ILQRDIR +L GH+ EVCG
Sbjct: 259 AAGKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCG 318
Query: 297 LKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTA 356
LKWS D++ LASGGNDN+L VWN S PV +Y EH AAVKAIAWSPH HGLLASGGGTA
Sbjct: 319 LKWSTDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTA 378
Query: 357 DRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
DRCIRFWNT T L C+DTGSQVCNL WSK+ NELVSTHGYSQNQI+VW+YP++++V
Sbjct: 379 DRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQV 436
|
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| UNIPROTKB|E2R4Z3 FZR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
Identities = 211/418 (50%), Positives = 268/418 (64%)
Query: 15 TMSLQPLTPPSDHISRMINANHHQSPSRA--IYSDRFIPSRSSSNFDLFNISQPSPNSPA 72
T + P++ PS H R I PSRA +S F R + N + SQ A
Sbjct: 32 TPANSPVSSPSKHGDRFI-------PSRAGANWSVNF--HRINENEK--SPSQNRKAKDA 80
Query: 73 VTDSHKDDNSGTYTALLRAALFG--------PETPEKKDVLGPPSGRNIFRFKSETRRSL 124
+D+ KD + Y+ALL+ L G P+T +++ P + +F + T+RS
Sbjct: 81 TSDNGKDGLA--YSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEKKGLFTYSLSTKRSS 138
Query: 125 ----HSLSPFGFD--DDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSH 178
+ +SP+ + + + SP K RK+ + P+K+LDAP LQDDFYLNLVDWSS
Sbjct: 139 PDDGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSL 198
Query: 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGID-DSVCSVGWANRNTHLAVGTSHGKVQIWDA 237
NVL+VGLG CVYLW+AC+S+VT+LCDL ++ DSV SVGW+ R +AVGT G VQIWDA
Sbjct: 199 NVLSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDA 258
Query: 238 SRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQE-DFVSKLSGHKSEVCG 296
+ K++ +EGH RV RD+ ILQRDIR +L GH+ EVCG
Sbjct: 259 AAGKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCG 318
Query: 297 LKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTA 356
LKWS D++ LASGGNDN+L VWN S PV +Y EH AAVKAIAWSPH HGLLASGGGTA
Sbjct: 319 LKWSTDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTA 378
Query: 357 DRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
DRCIRFWNT T L C+DTGSQVCNL WSK+ NELVSTHGYSQNQI+VW+YP++++V
Sbjct: 379 DRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQV 436
|
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| MGI|MGI:1926790 Fzr1 "fizzy/cell division cycle 20 related 1 (Drosophila)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
Identities = 210/418 (50%), Positives = 268/418 (64%)
Query: 15 TMSLQPLTPPSDHISRMINANHHQSPSRA--IYSDRFIPSRSSSNFDLFNISQPSPNSPA 72
T + P++ PS H R I PSRA +S F R + N + SQ A
Sbjct: 32 TPANSPVSSPSKHGDRFI-------PSRAGANWSVNF--HRINENEK--SPSQNRKAKDA 80
Query: 73 VTDSHKDDNSGTYTALLRAALFG--------PETPEKKDVLGPPSGRNIFRFKSETRRSL 124
+D+ KD + Y+ALL+ L G P+T +++ P + +F + ++RS
Sbjct: 81 TSDNGKDGLA--YSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEHKGLFTYSLSSKRSS 138
Query: 125 ----HSLSPFGFD--DDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSH 178
+ +SP+ + + + SP K RK+ + P+K+LDAP LQDDFYLNLVDWSS
Sbjct: 139 PDDGNDVSPYSLSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSL 198
Query: 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGID-DSVCSVGWANRNTHLAVGTSHGKVQIWDA 237
NVL+VGLG CVYLW+AC+S+VT+LCDL ++ DSV SVGW+ R +AVGT G VQIWDA
Sbjct: 199 NVLSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDA 258
Query: 238 SRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQE-DFVSKLSGHKSEVCG 296
+ K++ +EGH RV RD+ ILQRDIR +L GH+ EVCG
Sbjct: 259 AAGKKLSMLEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCG 318
Query: 297 LKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTA 356
LKWS D++ LASGGNDN+L VWN S PV +Y EH AAVKAIAWSPH HGLLASGGGTA
Sbjct: 319 LKWSTDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTA 378
Query: 357 DRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
DRCIRFWNT T L C+DTGSQVCNL WSK+ NELVSTHGYSQNQI+VW+YP++++V
Sbjct: 379 DRCIRFWNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQV 436
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| FB|FBgn0262699 rap "retina aberrant in pattern" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
Identities = 198/387 (51%), Positives = 254/387 (65%)
Query: 40 PSRAIYSDRFIPSRSSSNFDLFNISQPSPNSPAVTDSHKDDNSGTYTALLRAALFGPETP 99
P RA Y++ + + +S N N Q S ++ +D S Y+ LL+ L G
Sbjct: 39 PCRA-YNN-WQTNFASINKSNDNSPQTSKKQRDCGETARD--SLAYSCLLKNELLGSAID 94
Query: 100 EKK--------DVLGPPSGRNIFRFKSETRRSLHSLSPFGFDDDVASG--VSHSPVKAPR 149
+ K + P + R++F+++S T++ + P+ A + SP KA R
Sbjct: 95 DVKTAGEERNENAYTPAAKRSLFKYQSPTKQDYNGECPYSLSPVSAKSQKLLRSPRKATR 154
Query: 150 KVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGID- 208
K+ R P+K+LDAP LQDDFYLNLVDWSS NVLAVGLG+CVYLW+AC+S+VT+LCDL D
Sbjct: 155 KISRIPFKVLDAPELQDDFYLNLVDWSSQNVLAVGLGSCVYLWSACTSQVTRLCDLSPDA 214
Query: 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXR 268
++V SV W R +AVGT HG V +WD + K++ + GH RV R
Sbjct: 215 NTVTSVSWNERGNTVAVGTHHGYVTVWDVAANKQINKLNGHSARVGALAWNSDILSSGSR 274
Query: 269 DKSILQRDIRA-QEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
D+ I+QRD R Q +L+GH+ EVCGLKWS DN+ LASGGNDNRL+VWNQHS PV
Sbjct: 275 DRWIIQRDTRTPQLQSERRLAGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNQHSVNPVQ 334
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSK 387
Y EH AAVKAIAWSPH HGLLASGGGTADRCIRFWNT T + C+DTGSQVCNL WSK
Sbjct: 335 SYTEHMAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSK 394
Query: 388 NVNELVSTHGYSQNQIIVWRYPTMSKV 414
+ +ELVSTHGYSQNQI+VW+YP++++V
Sbjct: 395 HSSELVSTHGYSQNQILVWKYPSLTQV 421
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8L3Z8 | FZR2_ARATH | No assigned EC number | 0.7780 | 0.9759 | 0.8385 | yes | no |
| Q8VZS9 | FZR1_ARATH | No assigned EC number | 0.7647 | 0.9590 | 0.8378 | no | no |
| Q9R1K5 | FZR_MOUSE | No assigned EC number | 0.5459 | 0.8915 | 0.7505 | yes | no |
| Q9UM11 | FZR_HUMAN | No assigned EC number | 0.5491 | 0.8819 | 0.7379 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.III.2532.1 | hypothetical protein (458 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.IX.47.1 | hypothetical protein (385 aa) | • | 0.495 | |||||||
 | eugene3.00150723 | hypothetical protein (401 aa) | • | 0.491 | |||||||
 | gw1.II.4112.1 | hypothetical protein (413 aa) | • | 0.489 | |||||||
 | gw1.VI.132.1 | hypothetical protein (322 aa) | • | 0.487 | |||||||
 | gw1.40.503.1 | hypothetical protein (448 aa) | • | 0.487 | |||||||
 | estExt_fgenesh4_pg.C_400304 | hypothetical protein (446 aa) | • | 0.486 | |||||||
 | eugene3.00030383 | hypothetical protein (239 aa) | • | 0.477 | |||||||
 | gw1.IX.2532.1 | hypothetical protein (331 aa) | • | 0.472 | |||||||
 | gw1.57.252.1 | hypothetical protein (307 aa) | • | 0.470 | |||||||
 | gw1.I.4095.1 | hypothetical protein (331 aa) | • | 0.469 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 415 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-25 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-19 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-19 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-05 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 16/242 (6%)
Query: 173 VDWSSHN--VLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTS- 228
V S+ + + + LW+ + L G V SV + + + + +S
Sbjct: 57 VAASADGTYLASGSSDKTIRLWD--LETGECVRTLTGHTSYVSSVAF-SPDGRILSSSSR 113
Query: 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWSSS--LLSSGSRDKSILQRDIRAQEDFVSK 286
+++WD K + T+ GH V ++A+S ++S S+D +I D+R + V+
Sbjct: 114 DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVAT 172
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH EV + +S D +L S +D + +W+ + + + H V ++A+SP
Sbjct: 173 LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-G 231
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405
LLASG D IR W+ T + + + V +L WS + L S G + I +
Sbjct: 232 YLLASGS--EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS--GSADGTIRI 287
Query: 406 WR 407
W
Sbjct: 288 WD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 1e-21
Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 15/204 (7%)
Query: 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSG 266
V V ++ LA G+ G +++WD + +RT++GH V +A S + L+SG
Sbjct: 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASG 69
Query: 267 SRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV 326
S DK+I D+ E V L+GH S V + +S D R L+S D + VW+ + + +
Sbjct: 70 SSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL 128
Query: 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG----SQVCN 382
HT V ++A+SP +AS D I+ W+ T C+ T +V +
Sbjct: 129 TTLRGHTDWVNSVAFSPD-GTFVASSS--QDGTIKLWDLRT---GKCVATLTGHTGEVNS 182
Query: 383 LVWSKNVNELVSTHGYSQNQIIVW 406
+ +S + +L+S S I +W
Sbjct: 183 VAFSPDGEKLLS--SSSDGTIKLW 204
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.5 bits (223), Expect = 1e-19
Identities = 67/254 (26%), Positives = 114/254 (44%), Gaps = 13/254 (5%)
Query: 169 YLNLVDWSSHN---VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV 225
+ + +S L + LW+ + K G D V S+ ++ L
Sbjct: 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST-LAGHTDPVSSLAFSPDGGLLIA 215
Query: 226 GTSH-GKVQIWDASRCKRVR-TMEGHR-LRVGALAWSSSLLSSGSRDKSILQRDIRAQED 282
S G +++WD S K +R T+ GH V + + SLL+SGS D +I D+R+
Sbjct: 216 SGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN--QHSTQPVLKYCEHTAAVKAIA 340
+ LSGH S V + +S D + LASG +D + +W+ L H V +++
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335
Query: 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400
+SP L++ GG+ D IR W+ T L ++ S V ++ +S + V + G +
Sbjct: 336 FSPDGSLLVS--GGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP--DGRVVSSGSTD 391
Query: 401 NQIIVWRYPTMSKV 414
+ +W T S +
Sbjct: 392 GTVRLWDLSTGSLL 405
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-19
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS 300
RT++GH V +A+S LL++GS D +I D+ + + L GH V + S
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDL-ETGELLRTLKGHTGPVRDVAAS 60
Query: 301 YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360
D LASG +D + +W+ + + V HT+ V ++A+SP +L+S D+ I
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSS--RDKTI 117
Query: 361 RFWNTTTNTHLSCMDT-GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
+ W+ T L+ + V ++ +S + V++ I +W T V
Sbjct: 118 KVWDVETGKCLTTLRGHTDWVNSVAFSPD-GTFVAS-SSQDGTIKLWDLRTGKCV 170
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.3 bits (168), Expect = 8e-13
Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 10/216 (4%)
Query: 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH 229
++ + + + LW+ SS G SV SV ++ LA G+S
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305
Query: 230 GKVQIWDAS--RCKRVRTMEGHRLRVGALAWSSS---LLSSGSRDKSILQRDIRAQEDFV 284
G V++WD + T++GH V +L++S L+S GS D +I D+R
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR--TGKP 363
Query: 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPH 344
K S V + +S D R ++SG D + +W+ + + HT+ V ++ +SP
Sbjct: 364 LKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP- 422
Query: 345 LHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV 380
LASG +D IR W+ T+ +V
Sbjct: 423 DGKSLASGS--SDNTIRLWDLKTSLKSVSFSPDGKV 456
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.7 bits (161), Expect = 6e-12
Identities = 67/261 (25%), Positives = 117/261 (44%), Gaps = 17/261 (6%)
Query: 165 QDDFYLNLVDWSSHNVLAVGLGNCVYLWNA-CSSKVTKLCDLGIDDSVCSVGWANRNTH- 222
+D +L+ + LW+ K+ K + D SV + ++ + +
Sbjct: 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS 124
Query: 223 --LAVGTSHGKVQIWD-ASRCKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRD 276
LA + G V++WD ++ K +RT+EGH V +LA+S L S S D +I D
Sbjct: 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWD 184
Query: 277 IRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWNQHSTQPVLKYCEHTAA 335
+R +S L+GH V L +S D +ASG +D + +W+ + + + +
Sbjct: 185 LR-TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243
Query: 336 VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--SQVCNLVWSKNVNELV 393
++SP LLASG +D IR W+ +++ L +G S V ++ +S + L
Sbjct: 244 SVVSSFSPD-GSLLASGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA 300
Query: 394 STHGYSQNQIIVWRYPTMSKV 414
S G S + +W T +
Sbjct: 301 S--GSSDGTVRLWDLETGKLL 319
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.2 bits (121), Expect = 5e-07
Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 5/164 (3%)
Query: 248 GHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELA 307
G L +L S S + + + L GH+ + + +S D L
Sbjct: 22 GPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLL 81
Query: 308 SGGNDNRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
SG +D + +W+ + + ++K H ++V +A S + + D ++ W+
Sbjct: 82 SGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDL 141
Query: 366 TTNTHLSCMDTGSQ--VCNLVWSKNVNELVSTHGYSQNQIIVWR 407
+T L G V +L +S + L S I +W
Sbjct: 142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD-GTIKLWD 184
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-05
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319
+ L GH V + +S D LASG +D + VW+
Sbjct: 4 LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-05
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319
+ L GH V + +S D + LASG +D + +W+
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 221 THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDI 277
+ +A G VQ+WD +R + V M+ H RV ++ +SS +LL+SGS D S+ I
Sbjct: 546 SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605
Query: 278 RAQEDFVSKLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAV 336
+ + K+ +C +++ ++ R LA G D++++ ++ + P L C
Sbjct: 606 NQGVSIGTIKT--KANICCVQFPSESGRSLAFGSADHKVYYYDLRN--PKLPLCTMIGHS 661
Query: 337 KAIAW 341
K +++
Sbjct: 662 KTVSY 666
|
Length = 793 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.001
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364
+ + HT V ++A+SP LLASG D +R W+
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPD-GNLLASGS--DDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.0 bits (81), Expect = 0.003
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364
S + + HT V ++A+SP LASG D I+ W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPD-GKYLASGS--DDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 415 | |||
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.98 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.98 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.98 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.94 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.94 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.93 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.93 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.92 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.92 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.91 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.91 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.91 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.9 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.9 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.9 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.9 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.9 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.89 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.89 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.89 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.88 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.88 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.88 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.88 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.87 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.86 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.86 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.86 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.86 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.85 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.85 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.85 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.85 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.84 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.84 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.84 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.83 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.83 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.82 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.82 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.81 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.79 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.79 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.77 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.77 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.77 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.76 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.76 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.76 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.76 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.75 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.75 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.75 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.74 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.73 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.72 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.72 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.72 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.72 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.71 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.71 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.71 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.7 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.68 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.66 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.66 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.66 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.65 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.64 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.64 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.64 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.63 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.63 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.61 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.61 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.6 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.6 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.6 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.6 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.58 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.57 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.57 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.56 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.56 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.55 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.55 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.54 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.54 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.52 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.52 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.52 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.52 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.51 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.49 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.47 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.47 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.47 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.46 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.45 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.44 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.42 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.4 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.39 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.38 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.38 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.38 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.35 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.34 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.34 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.33 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.33 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.32 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.31 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.31 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.3 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.29 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.28 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.27 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.26 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.25 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.21 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.19 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.19 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.17 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.17 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.14 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.14 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.1 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.07 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.07 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.05 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.05 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.03 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.02 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.01 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.01 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.01 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.0 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.99 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.98 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.92 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.89 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.89 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.87 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.87 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.86 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.86 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.84 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.84 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.82 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.82 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.81 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.81 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.78 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.77 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.76 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.75 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.75 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.73 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.68 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.67 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.61 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.6 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.6 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.59 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.58 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.57 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.56 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.54 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.54 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.53 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.53 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.53 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.51 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.5 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.49 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.47 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.42 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.41 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.37 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.35 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.34 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.33 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.32 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.26 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.25 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.25 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.24 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.21 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.19 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.14 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.13 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.13 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.12 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.11 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.08 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.07 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.06 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.05 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.03 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.99 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.99 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.96 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.9 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.87 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.87 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.87 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.85 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.82 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.81 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.8 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.8 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.73 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.68 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.68 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.67 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.63 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.62 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.61 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.61 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.59 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.57 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.57 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.52 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.5 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.43 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.43 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.39 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.35 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.33 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.32 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.28 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.27 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.25 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.2 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.07 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 97.05 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.04 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.04 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.99 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.98 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.94 | |
| PRK10115 | 686 | protease 2; Provisional | 96.87 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.87 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.86 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.85 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.82 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.79 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.7 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.62 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.58 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.51 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.5 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.5 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.48 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.44 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.39 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.34 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.27 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.18 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.13 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.11 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.07 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.03 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.02 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.92 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.78 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.78 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.76 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.73 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.69 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.64 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.5 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.4 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.38 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.29 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 95.13 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.08 | |
| PRK10115 | 686 | protease 2; Provisional | 94.97 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.94 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 94.67 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.56 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.29 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.28 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 94.27 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 94.26 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 94.11 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 93.98 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.9 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 93.85 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 93.8 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 93.66 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.52 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 93.26 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 93.22 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 93.12 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 93.11 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 93.02 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 92.79 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 92.76 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 92.69 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.54 | |
| PLN02153 | 341 | epithiospecifier protein | 92.24 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 92.24 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 92.09 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.92 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 91.85 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 91.83 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 91.79 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 91.4 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 91.37 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 91.09 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 91.09 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 90.87 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 90.71 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 90.49 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 90.31 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.07 | |
| PLN02193 | 470 | nitrile-specifier protein | 89.57 | |
| PLN02153 | 341 | epithiospecifier protein | 89.5 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 89.48 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 89.19 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 89.15 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 88.95 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 88.91 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 88.84 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 88.77 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 88.49 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 88.3 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 87.48 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 87.33 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 86.9 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 85.97 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 85.84 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 85.77 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 85.76 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 85.57 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 85.53 | |
| PLN02193 | 470 | nitrile-specifier protein | 84.4 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 83.37 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 83.36 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 83.08 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 82.96 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 82.87 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 82.71 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 82.29 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 82.25 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 81.63 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 80.92 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 80.91 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 80.9 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 80.58 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 80.25 |
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-60 Score=456.99 Aligned_cols=372 Identities=52% Similarity=0.915 Sum_probs=312.6
Q ss_pred CCCCCCCcccCCCCCC-Cccc-ccccCCCCCCCCccC--CCCCCChHHHHHHHHHHhCCCCC--CCcc-CCCCC-CCCCc
Q 014934 41 SRAIYSDRFIPSRSSS-NFDL-FNISQPSPNSPAVTD--SHKDDNSGTYTALLRAALFGPET--PEKK-DVLGP-PSGRN 112 (415)
Q Consensus 41 ~~~~~~drfip~r~~~-~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~-~~~~~ 112 (415)
....++|||||.|... ++.. |.... ....+.+.. ++..+....|..++++|+|+... ++.. ...+. +...+
T Consensus 41 ~~~~~~~rf~P~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 119 (484)
T KOG0305|consen 41 PSSKVGDRFIPSRLSSEEFNRNFKYIG-SFSRPNKRSALDTGRESSSLAASLLRSELFKSNKITSEQSLRALPDEPNRDR 119 (484)
T ss_pred cccccCCccCCcccchhhccccccccc-cccccccccccccccccchhhhhhhhhhhhccCccchhhhhhhccCCccccc
Confidence 4556999999999995 4433 32211 111111110 11224566777899999998651 0000 11122 22379
Q ss_pred ceeecCCCcCC-CCCCCCccc--CCCCCCCcCCCCCCCCCCCCCCCceeccCCCCCCCcceeEeecCCCcEEEEEcCCeE
Q 014934 113 IFRFKSETRRS-LHSLSPFGF--DDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCV 189 (415)
Q Consensus 113 l~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~k~~r~i~~~p~~~ld~~~l~~~~~i~~l~ws~~~~la~~~d~~V 189 (415)
+|.|+..++.+ .....|... ..+........|++..|+++..|+++||+|.+.+|||+|.++|+..++||+|++..|
T Consensus 120 i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~r~~~r~~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~v 199 (484)
T KOG0305|consen 120 ILTYKSKAPRPRSRTQEPDSVYPSAESSIRLLSSPRKLKRKIPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSV 199 (484)
T ss_pred eeEecccCCCCccccccccccccccccccccccccccccCcccCChhhhccCCcccccHhhhHhhcccCCeEEEEecceE
Confidence 99999987663 222223211 011111233457899999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecC-CCccEEEEEeeCCEEEEEeC
Q 014934 190 YLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG-HRLRVGALAWSSSLLSSGSR 268 (415)
Q Consensus 190 ~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~~~~~~l~sgs~ 268 (415)
|+|+..++++..++.++ .+.|++|.|+++|.+||+|..+|.|.|||..+.+.++.+.+ |..+|.+++|+...+.+|+.
T Consensus 200 ylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr 278 (484)
T KOG0305|consen 200 YLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSR 278 (484)
T ss_pred EEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecC
Confidence 99999999999999876 78999999999999999999999999999999999999998 99999999999999999999
Q ss_pred CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcE
Q 014934 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGL 348 (415)
Q Consensus 269 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 348 (415)
|+.|.++|++..+.....+.+|.++||+++|++|+++||+|++|+.+.|||.....+.+++..|.++|++++|||....|
T Consensus 279 ~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~l 358 (484)
T KOG0305|consen 279 DGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGL 358 (484)
T ss_pred CCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCc
Confidence 99999999999887666688999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 349 LASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 349 lasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
||+|||+.|++|+|||+.+|+.+..++++++||+|.|++..++|+++||+.++.|.||+|++++++
T Consensus 359 LAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~ 424 (484)
T KOG0305|consen 359 LATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV 424 (484)
T ss_pred eEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee
Confidence 999999999999999999999999999999999999999999999999999999999999998765
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=283.83 Aligned_cols=238 Identities=27% Similarity=0.519 Sum_probs=210.6
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee-
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV- 243 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~- 243 (415)
+..|-|+.|+| +..|++| .|.++++||+.+......+. +|...|.||+|+|||+.||+|+.||+|++||.++++++
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g 193 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG 193 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc
Confidence 44688999999 7788888 46899999999999888887 99999999999999999999999999999999988755
Q ss_pred EEecCCCccEEEEEeeC-------CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 244 RTMEGHRLRVGALAWSS-------SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~~-------~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
+.+.+|...|++++|.| ++|++++.||.|+|||+..+. ++..+.+|...|+|++|--+| +|++|+.|++|+
T Consensus 194 ~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIk 271 (480)
T KOG0271|consen 194 RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIK 271 (480)
T ss_pred ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcCCc-eEEecCCCceEE
Confidence 67899999999999973 689999999999999998876 688899999999999997544 888999999999
Q ss_pred EEECCCC-------------------------------------------------------------------------
Q 014934 317 VWNQHST------------------------------------------------------------------------- 323 (415)
Q Consensus 317 iwd~~~~------------------------------------------------------------------------- 323 (415)
+|+...|
T Consensus 272 vw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW 351 (480)
T KOG0271|consen 272 VWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLW 351 (480)
T ss_pred EEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEe
Confidence 9986431
Q ss_pred ------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEE
Q 014934 324 ------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 324 ------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~ 396 (415)
+++.++.+|+.-|+.+.|+|+++ ++|+++ .|+.|++||.++|+.+..+. |-..|+.++|+.|.+.|++
T Consensus 352 ~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaS--FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS-- 426 (480)
T KOG0271|consen 352 NPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASAS--FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS-- 426 (480)
T ss_pred cccccccchhhhhchhhheeeEEECCCcc-EEEEee--cccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE--
Confidence 23334567899999999999997 888887 99999999999999999997 7789999999999999999
Q ss_pred ecCCCcEEEEECCCCc
Q 014934 397 GYSQNQIIVWRYPTMS 412 (415)
Q Consensus 397 g~~dg~I~vw~~~s~~ 412 (415)
|+.|.+|+||++.+.+
T Consensus 427 ~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTKK 442 (480)
T ss_pred cCCCceEEEEEeeeee
Confidence 8899999999998743
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=282.90 Aligned_cols=236 Identities=25% Similarity=0.482 Sum_probs=212.9
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC-----CCCeEEEEECCCcEEEEECCC
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-----RNTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-----~g~~la~g~~dg~V~iwd~~~ 239 (415)
.-+|-|++|+| +..||.| .+|+|.+||..+|+..-...-+|...|++++|.| ..++||+++.||.|+|||+..
T Consensus 157 ~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~ 236 (480)
T KOG0271|consen 157 KNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL 236 (480)
T ss_pred ccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC
Confidence 45799999999 8888888 5899999999999876555449999999999976 567999999999999999999
Q ss_pred CeeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCC-------------------------------------
Q 014934 240 CKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQE------------------------------------- 281 (415)
Q Consensus 240 ~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~------------------------------------- 281 (415)
+.++..+.+|..+|+|+.|- ..++++|+.|++|++|+...+.
T Consensus 237 ~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 237 GTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred ceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 99999999999999999999 4799999999999999865321
Q ss_pred -----------------------------------------ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 282 -----------------------------------------DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 282 -----------------------------------------~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
+++..+.+|...|..+.||||++++|+++-|+.|++||.
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence 112235689999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecC
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
++|+.+..|.+|-++|..++|+.|.+ ||++|+ .|.++++|++++.+....+. |..+|.++.|+|||..+++ |+.
T Consensus 397 ~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~S--kDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~s--ggk 471 (480)
T KOG0271|consen 397 RTGKFLASFRGHVAAVYQVAWSADSR-LLVSGS--KDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVAS--GGK 471 (480)
T ss_pred CCcchhhhhhhccceeEEEEeccCcc-EEEEcC--CCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeec--CCC
Confidence 99999999999999999999999986 999988 99999999999999988887 8899999999999999998 889
Q ss_pred CCcEEEEE
Q 014934 400 QNQIIVWR 407 (415)
Q Consensus 400 dg~I~vw~ 407 (415)
|..+++|.
T Consensus 472 dkv~~lw~ 479 (480)
T KOG0271|consen 472 DKVLRLWR 479 (480)
T ss_pred ceEEEeec
Confidence 99999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=284.54 Aligned_cols=235 Identities=21% Similarity=0.330 Sum_probs=217.6
Q ss_pred CcceeEeecCCC----cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 167 DFYLNLVDWSSH----NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 167 ~~~i~~l~ws~~----~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.-.+.++.|+|. ++..++.||+|++|+..+...+..++ +|...|..|+|+|+|++|++++.|.+-++||+.++..
T Consensus 217 ~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E 295 (459)
T KOG0272|consen 217 TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE 295 (459)
T ss_pred ccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh-cchhhheeeeecCCCceeeecccccchhhcccccchh
Confidence 346889999994 34444579999999999887776665 8999999999999999999999999999999999999
Q ss_pred eEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
+...+||...|.+++|+ |.++++|+.|..-+|||+|++. ++..+.+|..+|.++.|+|+|.+||||+.|++++|||+
T Consensus 296 lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 296 LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL 374 (459)
T ss_pred hHhhcccccccceeEecCCCceeeccCccchhheeecccCc-EEEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence 98899999999999998 6899999999999999999998 68899999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecC
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
+..+.+..+.+|..-|+.|.|+|...++|++++ .|+++++|...+..+++.+. |.+.|.++.+++++..+++ ++.
T Consensus 375 R~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas--yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t--~s~ 450 (459)
T KOG0272|consen 375 RMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS--YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIAT--SSF 450 (459)
T ss_pred cccccceecccccchhhheEecccCCeEEEEcc--cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEE--ecc
Confidence 999999999999999999999997777999998 99999999999999999886 7889999999999999999 678
Q ss_pred CCcEEEEE
Q 014934 400 QNQIIVWR 407 (415)
Q Consensus 400 dg~I~vw~ 407 (415)
|++|++|.
T Consensus 451 DRT~KLW~ 458 (459)
T KOG0272|consen 451 DRTIKLWR 458 (459)
T ss_pred Cceeeecc
Confidence 99999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=279.39 Aligned_cols=250 Identities=22% Similarity=0.352 Sum_probs=226.2
Q ss_pred eccCCCCCCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCC--CCeEEEEECCCcEE
Q 014934 158 ILDAPALQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR--NTHLAVGTSHGKVQ 233 (415)
Q Consensus 158 ~ld~~~l~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~--g~~la~g~~dg~V~ 233 (415)
.|....+.++-.+..+.|+. +..|++| .+|.+++|+..+......+. +|.+.|.++.|+|. +..||+|+.||+|+
T Consensus 166 ~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 166 ELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVK 244 (459)
T ss_pred hhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCcee
Confidence 34556677788899999998 7777777 59999999999998777776 99999999999996 66899999999999
Q ss_pred EEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 234 IWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 234 iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
+|++.+...+..+.+|..+|..++|+ |++|.+++.|.+-++||++++.. +....||..+|.+++|+|||.++++||.
T Consensus 245 lw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGSL~~tGGl 323 (459)
T KOG0272|consen 245 LWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGSLAATGGL 323 (459)
T ss_pred eeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCCceeeccCc
Confidence 99999999999999999999999999 68999999999999999999884 5667899999999999999999999999
Q ss_pred CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECC-CC
Q 014934 312 DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSK-NV 389 (415)
Q Consensus 312 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~-~~ 389 (415)
|..-+|||+++++++..+.+|...|.+++|+|+| +.+|+|+ .|++++|||++....+..+. |.+-|+.+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs--~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGS--SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEecccccceeeEeECCCc-eEEeecC--CCCcEEEeeecccccceecccccchhhheEecccCC
Confidence 9999999999999999999999999999999998 4899988 89999999999999988886 677899999999 66
Q ss_pred CeEEEEEecCCCcEEEEECCCCccc
Q 014934 390 NELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 390 ~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
.+|++ ++-|++++||.-++...+
T Consensus 401 ~fL~T--asyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 401 YFLVT--ASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred eEEEE--cccCcceeeecCCCcccc
Confidence 77777 567999999999887654
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=284.37 Aligned_cols=236 Identities=20% Similarity=0.384 Sum_probs=213.7
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCC-------------------------------eEEeEecCCCCCeEEEE
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK-------------------------------VTKLCDLGIDDSVCSVG 215 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~-------------------------------~~~~~~~~~~~~V~~v~ 215 (415)
.++|.++++ ..+||.| .|..|++|.+...+ ..+. ..+|.++|.++.
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~-L~GH~GPVyg~s 458 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT-LYGHSGPVYGCS 458 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE-eecCCCceeeee
Confidence 388999999 6788888 47899999986311 1111 238999999999
Q ss_pred EcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCC
Q 014934 216 WANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSE 293 (415)
Q Consensus 216 ~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 293 (415)
|+|+.++|++++.|++|++|.+.+..++..+++|..+|+++.|+ |.+|++++.|++.++|...... +.+.+.+|-..
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-PlRifaghlsD 537 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAGHLSD 537 (707)
T ss_pred ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-chhhhcccccc
Confidence 99999999999999999999999999999999999999999999 5799999999999999998865 78899999999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE
Q 014934 294 VCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC 373 (415)
Q Consensus 294 V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~ 373 (415)
|.|++|+|+..++|+|+.|.+|++||+.+|..+..|.+|.++|.+++|||+|+ .|++|+ .|+.|++||+.+|..+..
T Consensus 538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr-~LaSg~--ed~~I~iWDl~~~~~v~~ 614 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR-YLASGD--EDGLIKIWDLANGSLVKQ 614 (707)
T ss_pred cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc-eEeecc--cCCcEEEEEcCCCcchhh
Confidence 99999999999999999999999999999999999999999999999999998 788887 999999999999988776
Q ss_pred ee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 374 MD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 374 ~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+. |.+.|+++.|+.+|..||+ |+.|++|++||+..-
T Consensus 615 l~~Ht~ti~SlsFS~dg~vLas--gg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 615 LKGHTGTIYSLSFSRDGNVLAS--GGADNSVRLWDLTKV 651 (707)
T ss_pred hhcccCceeEEEEecCCCEEEe--cCCCCeEEEEEchhh
Confidence 64 7788999999999999999 788999999998653
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=244.06 Aligned_cols=246 Identities=20% Similarity=0.349 Sum_probs=217.9
Q ss_pred eeccCCCCCCCcceeEeecCC-C-cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEE
Q 014934 157 KILDAPALQDDFYLNLVDWSS-H-NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQI 234 (415)
Q Consensus 157 ~~ld~~~l~~~~~i~~l~ws~-~-~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~i 234 (415)
++|.-+.- .|.+++|++ . .++.++.||.+.|||..+......+.+ ....|..++|+|.|+++|+|+-|+...|
T Consensus 49 r~LkGH~~----Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLN----KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred EEeccccc----ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCCCeEEecCcCceeEE
Confidence 55554332 478999999 4 455555799999999999887777764 3678999999999999999999999999
Q ss_pred EECCCC------eeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEE
Q 014934 235 WDASRC------KRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNREL 306 (415)
Q Consensus 235 wd~~~~------~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 306 (415)
|++.+. +..+.+.+|.+.+.|+.|- ...|++++.|.++.+||++++. ....+.+|.+.|.+|.++| +++.|
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ-QTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce-EEEEecCCcccEEEEecCCCCCCeE
Confidence 999754 4567789999999999997 6899999999999999999998 5888999999999999999 99999
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC---CCEEEE
Q 014934 307 ASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG---SQVCNL 383 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~---~~V~~l 383 (415)
++|+-|+..+|||++.+..++.|.+|...|++++|.|+|. -+++|+ .|++.++||++..+.+..+.+. ..|+++
T Consensus 203 vSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGS--DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGS--DDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred EecccccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecC--CCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 9999999999999999999999999999999999999996 778877 9999999999999998888754 568999
Q ss_pred EECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 384 VWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 384 ~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+||..|++|++ |+.|..+.|||.=..+.
T Consensus 280 ~FS~SGRlLfa--gy~d~~c~vWDtlk~e~ 307 (343)
T KOG0286|consen 280 AFSKSGRLLFA--GYDDFTCNVWDTLKGER 307 (343)
T ss_pred EEcccccEEEe--eecCCceeEeeccccce
Confidence 99999999999 89999999999765543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=261.01 Aligned_cols=242 Identities=22% Similarity=0.393 Sum_probs=219.0
Q ss_pred CCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 165 QDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 165 ~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.+.-.|++++|+. +.+||+| .+|.++||+...+. ...+. .|.++|.++.|+.+|.+|++++.||++.+||..++..
T Consensus 233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~tl~-~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-ISTLG-QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CccCCcceEEecCCCCeEEEeecCcEEEEEecCchh-hhhhh-ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 3345699999998 8999999 58999999975544 44443 7899999999999999999999999999999999999
Q ss_pred eEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 243 VRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
...+..|..+-..+.|- ...|++++.|+.|+++-+.... ++.++.+|.++|.+|.|+|.|.+|++++.|++++||+..
T Consensus 311 ~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG 389 (524)
T ss_pred EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCC-cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecC
Confidence 99999999988889997 6899999999999999998876 688899999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCC--------cEEEEEcCCCCCeEEEEECCCCcEEEEe-eCCCCEEEEEECCCCCeE
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLH--------GLLASGGGTADRCIRFWNTTTNTHLSCM-DTGSQVCNLVWSKNVNEL 392 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~--------~llasggg~~d~~I~iwd~~t~~~~~~~-~~~~~V~~l~~s~~~~~l 392 (415)
.......+..|...|..+.|+|.|. ..+++++ .|++|++||+..|.++..+ +|..+|.+++|+|+|+++
T Consensus 390 ~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas--~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 390 QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS--FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee--cCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEE
Confidence 9999999999999999999999874 3566666 8999999999999999998 689999999999999999
Q ss_pred EEEEecCCCcEEEEECCCCcc
Q 014934 393 VSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 393 ~s~~g~~dg~I~vw~~~s~~~ 413 (415)
++ |+.||.|++|+.++.+-
T Consensus 468 As--Gs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 468 AS--GSLDGCVHIWSTKTGKL 486 (524)
T ss_pred Ee--cCCCCeeEeccccchhe
Confidence 99 99999999999998653
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=244.77 Aligned_cols=238 Identities=21% Similarity=0.326 Sum_probs=206.2
Q ss_pred eeEeecCC---CcEEEEEcCCeEEEEECCC-----CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 170 LNLVDWSS---HNVLAVGLGNCVYLWNACS-----SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 170 i~~l~ws~---~~~la~~~d~~V~iwd~~~-----~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
|..++..+ +.++.++.|..+.+|++.. |...+.+. +|.-.|..+..++||++.++++.||++++||+.+++
T Consensus 18 Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~ 96 (315)
T KOG0279|consen 18 VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE 96 (315)
T ss_pred EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEeccccceEEEEEecCCc
Confidence 44555444 3445555789999998754 55667776 899999999999999999999999999999999999
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEE
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFV 317 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd--g~~lasg~~dg~I~i 317 (415)
..+.|.+|...|.+++++ ...+++|++|++|++|++-........-..+..-|.|+.|+|+ ..+|++++.|++|++
T Consensus 97 ~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKv 176 (315)
T KOG0279|consen 97 STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKV 176 (315)
T ss_pred EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEE
Confidence 999999999999999999 4799999999999999998765322222233788999999997 789999999999999
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEe
Q 014934 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g 397 (415)
||+++.+....+.+|++.++.++++|||. +.++|| .||.+.+||+..++.++.+++...|.+++|+|+...|+.+.
T Consensus 177 Wnl~~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGg--kdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at- 252 (315)
T KOG0279|consen 177 WNLRNCQLRTTFIGHSGYVNTVTVSPDGS-LCASGG--KDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT- 252 (315)
T ss_pred EccCCcchhhccccccccEEEEEECCCCC-EEecCC--CCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-
Confidence 99999999999999999999999999998 899987 99999999999999999999999999999999999888843
Q ss_pred cCCCcEEEEECCCCccc
Q 014934 398 YSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 398 ~~dg~I~vw~~~s~~~l 414 (415)
+..|+|||..+...+
T Consensus 253 --~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 253 --ATSIKIWDLESKAVV 267 (315)
T ss_pred --CCceEEEeccchhhh
Confidence 446999999886543
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=242.60 Aligned_cols=232 Identities=23% Similarity=0.431 Sum_probs=198.1
Q ss_pred ceeEeecCC-Cc-EEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~-~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.|+-++.++ ++ .|.++.|+.+++||+.+++..+.+. +|...|.+++|++|.+.+++|+.|.+|.+|++.........
T Consensus 65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~ 143 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIH 143 (315)
T ss_pred EecceEEccCCceEEeccccceEEEEEecCCcEEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEe
Confidence 466667777 44 5555579999999999998888876 99999999999999999999999999999998755443333
Q ss_pred cC-CCccEEEEEeeCC----EEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 247 EG-HRLRVGALAWSSS----LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 247 ~~-h~~~V~~l~~~~~----~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
.. +..-|.|+.|+|+ +|++++.|+++++||+++.+ ....+.+|.+.++.+++||||.++++|+.||.+.+||++
T Consensus 144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN 222 (315)
T ss_pred cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-hhhccccccccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence 32 3789999999964 89999999999999999887 678888999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC----------CCCEEEEEECCCCCe
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT----------GSQVCNLVWSKNVNE 391 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~----------~~~V~~l~~s~~~~~ 391 (415)
.++.+..+ +|...|.+++|+|+.- .|+.+ .+..|+|||+.++.++..+.. .-.-.+++|+++|..
T Consensus 223 ~~k~lysl-~a~~~v~sl~fspnry-wL~~a---t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~t 297 (315)
T KOG0279|consen 223 EGKNLYSL-EAFDIVNSLCFSPNRY-WLCAA---TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQT 297 (315)
T ss_pred CCceeEec-cCCCeEeeEEecCCce-eEeec---cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcE
Confidence 99998887 7899999999999864 44444 467799999999988776641 122457999999999
Q ss_pred EEEEEecCCCcEEEEECC
Q 014934 392 LVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~ 409 (415)
|++ |+.||.|++|.+.
T Consensus 298 Lf~--g~td~~irv~qv~ 313 (315)
T KOG0279|consen 298 LFA--GYTDNVIRVWQVA 313 (315)
T ss_pred EEe--eecCCcEEEEEee
Confidence 999 9999999999874
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=236.94 Aligned_cols=242 Identities=21% Similarity=0.332 Sum_probs=206.5
Q ss_pred CcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
|.-||.+...| +..||++....|++||+.+++...+..+ +|+..|++|.|..+|+.+++|+.||+++|||++...+.+
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR 119 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR 119 (311)
T ss_pred ccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch
Confidence 34589999999 8899999999999999999876444333 888999999999999999999999999999999977777
Q ss_pred EecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 245 TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
.++ |..+|+++..++ ..|++|..+|.|++||++........+......|.++...|||.+|+.+.+-|.+++|++.+
T Consensus 120 ~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 120 NYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred hcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 676 779999999996 58999999999999999987533333344557899999999999999999999999999865
Q ss_pred C------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEEEEee-CCCCEEEEEECCCCCeEEE
Q 014934 323 T------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMD-TGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 323 ~------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~~~~~-~~~~V~~l~~s~~~~~l~s 394 (415)
. +++.+++.|++.+..+.+||+++ +||+++ .|.+++||++.+. +....++ +...+..++||.+|++|++
T Consensus 199 ~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~s--sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 199 HQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCS--SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred CCccccceEhhheecccceEEEEEECCCCc-EEEeec--CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEe
Confidence 4 56788899999999999999998 666665 7999999999987 3323333 4457999999999999999
Q ss_pred EEecCCCcEEEEECCCCccc
Q 014934 395 THGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s~~~l 414 (415)
|++|+..++|+++..+++
T Consensus 276 --assd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 276 --ASSDHTARLWDLSAGKEV 293 (311)
T ss_pred --cCCCCceeecccccCcee
Confidence 889999999999998864
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=258.80 Aligned_cols=238 Identities=21% Similarity=0.445 Sum_probs=215.3
Q ss_pred CCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 166 DDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 166 ~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
.|..|.++.|++ +.++++| .+|.|++|+..-..+. .+.-.|...|++++|+|+...+++++.||+|+|||....+..
T Consensus 137 HDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee 215 (464)
T KOG0284|consen 137 HDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK-IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE 215 (464)
T ss_pred hcccceeEEEccCCCEEEEcCCCceEEecccchhhhH-HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh
Confidence 466799999999 7777777 4689999998665543 333355689999999999999999999999999999998888
Q ss_pred EEecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 244 RTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
+.+.+|.-.|.+++|+| .++++|+.|..|++||.+++. ++..+.+|+..|.++.|+|++++|++++.|..++++|++
T Consensus 216 ~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~-cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 216 RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS-CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc-hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehh
Confidence 89999999999999996 699999999999999999998 688999999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEecC
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
+.+.++.+++|+..|++++|+|-.+.||++|| .||.|.+|.+...+++..+. |...|++++|+|-|..|++ |+.
T Consensus 295 ~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg--~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~t--gsn 370 (464)
T KOG0284|consen 295 TMKELFTYRGHKKDVTSLTWHPLNESLFTSGG--SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILAT--GSN 370 (464)
T ss_pred HhHHHHHhhcchhhheeeccccccccceeecc--CCCceEEEeccccccccCCCcccccceeeeeccccceeEee--cCC
Confidence 99999999999999999999999999999998 89999999998777777665 6788999999999999988 899
Q ss_pred CCcEEEEECC
Q 014934 400 QNQIIVWRYP 409 (415)
Q Consensus 400 dg~I~vw~~~ 409 (415)
|.++++|.-.
T Consensus 371 d~t~rfw~r~ 380 (464)
T KOG0284|consen 371 DRTVRFWTRN 380 (464)
T ss_pred CcceeeeccC
Confidence 9999999743
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=246.89 Aligned_cols=242 Identities=22% Similarity=0.344 Sum_probs=218.5
Q ss_pred CcceeEeecCCCcEEEEE--cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC-Ceee
Q 014934 167 DFYLNLVDWSSHNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-CKRV 243 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~-~~~~ 243 (415)
...|..+-++|...+.+. .|.+|++||..++++.+.+. +|.+.|.+|+|+..|++||+++.|-.+++||..+ .+++
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ 186 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR-GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCI 186 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh-ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHH
Confidence 456788888995544444 48999999999999977776 9999999999999999999999998899999987 5788
Q ss_pred EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
+.+.+|...|.+++|- +++++++++|.+|+.|++.++. ++.++.+|..-|..++.+.||.++|++++|.+|++|-+.
T Consensus 187 ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~ 265 (406)
T KOG0295|consen 187 KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA 265 (406)
T ss_pred HHhcCcccceeeEEEEecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEec
Confidence 8899999999999997 6999999999999999999998 789999999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCC--------------CcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEEC
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHL--------------HGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWS 386 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~--------------~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s 386 (415)
++++...+.+|+.+|.+++|.|.. ..++++++ .|++|++||+.+|.++.++. |.+.|+.++|+
T Consensus 266 t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S--rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~ 343 (406)
T KOG0295|consen 266 TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS--RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS 343 (406)
T ss_pred cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec--ccceEEEEeccCCeEEEEEecccceeeeeEEc
Confidence 999989999999999999998742 23677776 99999999999999999886 78899999999
Q ss_pred CCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 387 KNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 387 ~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
|.|++|++ ..+|++|++||+.+++++
T Consensus 344 p~Gkyi~S--caDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 344 PGGKYILS--CADDKTLRVWDLKNLQCM 369 (406)
T ss_pred CCCeEEEE--EecCCcEEEEEeccceee
Confidence 99999999 568999999999998876
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=259.37 Aligned_cols=241 Identities=21% Similarity=0.359 Sum_probs=213.6
Q ss_pred CcceeEeecCC-CcEEEEEcC--CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 167 DFYLNLVDWSS-HNVLAVGLG--NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d--~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
+..|..+.|+. +++||.|+. |.+-+|+.++...+...+ +|...+++++++|||+++|+|+.||.|+|||...+-|+
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence 34578888988 999999976 599999999877655554 89999999999999999999999999999999999999
Q ss_pred EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEecc-ccCCeEEEEEeCCCCEEEEEeCCC-cEEEEE
Q 014934 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSG-HKSEVCGLKWSYDNRELASGGNDN-RLFVWN 319 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~lasg~~dg-~I~iwd 319 (415)
.++..|+..|+.+.|. ++.+++.+-||+|+.||+..... .+++.. ......|++..|.|.++..|+.|. .|+||+
T Consensus 386 vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS 464 (893)
T ss_pred EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence 9999999999999998 89999999999999999987763 455543 334567899999999999999886 599999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEEEEeeCCCCEEEEEECCCCCeEEEEEec
Q 014934 320 QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMDTGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 320 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
+.+|+.+-.+.+|.++|.+++|+|++. +|++++ .|++||+||+-.. ..+.++...+.|..+.|.|+|++|++ ..
T Consensus 465 ~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~S--WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaV--aT 539 (893)
T KOG0291|consen 465 VQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGS--WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAV--AT 539 (893)
T ss_pred eecCeeeehhcCCCCcceeeEEccccC-eEEecc--ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEE--EE
Confidence 999999999999999999999999998 999988 9999999998654 45677788899999999999999999 56
Q ss_pred CCCcEEEEECCCCccc
Q 014934 399 SQNQIIVWRYPTMSKV 414 (415)
Q Consensus 399 ~dg~I~vw~~~s~~~l 414 (415)
.||+|.+||...+.++
T Consensus 540 ldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 540 LDGQITFFDIKEAVQV 555 (893)
T ss_pred ecceEEEEEhhhceee
Confidence 8999999999887664
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-31 Score=231.96 Aligned_cols=232 Identities=20% Similarity=0.362 Sum_probs=206.1
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCC------CeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSS------KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~------~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~ 239 (415)
.+|...+|+| ++++|+| .|+...||++.+. .+.+.+. +|++.+.|+.|-. ..+|++|+.|.+..+||+++
T Consensus 98 ~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~-gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 98 SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA-GHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET 175 (343)
T ss_pred eeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeec-CccceeEEEEEcC-CCceEecCCCceEEEEEccc
Confidence 4688889999 8999988 6899999998854 2233333 8999999999987 45688999999999999999
Q ss_pred CeeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 240 CKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 240 ~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
++.+..|.+|.+.|.++++.| +.+++|+-|+..++||+|.+. .++.+.+|...|++++|.|+|.-|++|+.|++.+
T Consensus 176 g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP~G~afatGSDD~tcR 254 (343)
T KOG0286|consen 176 GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFPSGDAFATGSDDATCR 254 (343)
T ss_pred ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-eeEeecccccccceEEEccCCCeeeecCCCceeE
Confidence 999999999999999999974 899999999999999999996 7999999999999999999999999999999999
Q ss_pred EEECCCCceeEEecc--CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEE
Q 014934 317 VWNQHSTQPVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 317 iwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~ 393 (415)
+||++..+.+..|.. -..+|++++|+..|+ ||.+|. .|..+.+||.-.++.+..+. |+..|.++..+|||.-++
T Consensus 255 lyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy--~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~ 331 (343)
T KOG0286|consen 255 LYDLRADQELAVYSHDSIICGITSVAFSKSGR-LLFAGY--DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVA 331 (343)
T ss_pred EEeecCCcEEeeeccCcccCCceeEEEccccc-EEEeee--cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEE
Confidence 999999988888853 346799999999998 555554 79999999999999888775 789999999999999888
Q ss_pred EEEecCCCcEEEEE
Q 014934 394 STHGYSQNQIIVWR 407 (415)
Q Consensus 394 s~~g~~dg~I~vw~ 407 (415)
+ |+.|..|+||.
T Consensus 332 T--gSWDs~lriW~ 343 (343)
T KOG0286|consen 332 T--GSWDSTLRIWA 343 (343)
T ss_pred e--cchhHheeecC
Confidence 8 89999999994
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.9e-31 Score=237.19 Aligned_cols=236 Identities=22% Similarity=0.384 Sum_probs=215.0
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
-+|.|+++.| +.++++| .|++|.|||+.+|++...+. +|-..|..|++++...||++++.|+.|+.||++..+.++.
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~ 230 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRH 230 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHH
Confidence 3799999999 7788888 58999999999999877775 8999999999999999999999999999999999999999
Q ss_pred ecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+.+|-..|.|++.+| +.|++|++|.++++||+|+.. .+..+.+|..+|..+.+.|-...+++|+.|++|++||++.+
T Consensus 231 YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 231 YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAG 309 (460)
T ss_pred hccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccC
Confidence 999999999999995 799999999999999999988 58999999999999999998889999999999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCc
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
+....+..|...|.+++.+|.. +++|+++ ...|+-|++..|..++.+. +..-|..+....|+ ++++ |+++|.
T Consensus 310 kt~~tlt~hkksvral~lhP~e-~~fASas---~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~--G~dng~ 382 (460)
T KOG0285|consen 310 KTMITLTHHKKSVRALCLHPKE-NLFASAS---PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS--GGDNGS 382 (460)
T ss_pred ceeEeeecccceeeEEecCCch-hhhhccC---CccceeccCCccchhhccccccceeeeeeeccCc-eEEE--cCCceE
Confidence 9999999999999999999986 4888886 5679999999999888865 45667888888877 4566 889999
Q ss_pred EEEEECCCCc
Q 014934 403 IIVWRYPTMS 412 (415)
Q Consensus 403 I~vw~~~s~~ 412 (415)
|.+||+.++-
T Consensus 383 ~~fwdwksg~ 392 (460)
T KOG0285|consen 383 IMFWDWKSGH 392 (460)
T ss_pred EEEEecCcCc
Confidence 9999998864
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-30 Score=256.63 Aligned_cols=240 Identities=24% Similarity=0.402 Sum_probs=208.1
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCC--eEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC-CCCe
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK--VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA-SRCK 241 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~--~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~-~~~~ 241 (415)
...+.++++++ ++.++.+ .++.+++|+..+.+ ..... .+|...|.+++|+|+|+++++|+.|++|+|||+ ..+.
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 34688899999 7777777 68999999997766 44444 389999999999999999999999999999999 5568
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd 319 (415)
.++++.+|...|++++|+ ++++++|+.|++|++||+++++ +...+.+|.+.|.+++|++++++|++++.|+.|+|||
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 999999999999999999 5799999999999999999976 7899999999999999999999999999999999999
Q ss_pred CCCCc--eeEEeccCCCc--EEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCC---CEEEEEECCCCCe
Q 014934 320 QHSTQ--PVLKYCEHTAA--VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGS---QVCNLVWSKNVNE 391 (415)
Q Consensus 320 ~~~~~--~~~~~~~h~~~--V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~---~V~~l~~s~~~~~ 391 (415)
+.++. ++..+..+... +..++|+|++.++++.. .|+.+++||+..+..+..+. +.. .+.+...++.+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 317 LETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred CCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence 99998 56777776666 99999999999666644 79999999999998888776 323 2344556788999
Q ss_pred EEEEEecCCCcEEEEECCCCcc
Q 014934 392 LVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+++ |+.|+.|++|++.++..
T Consensus 394 i~s--g~~d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 394 IYS--GSEDGSVYVWDSSSGGI 413 (456)
T ss_pred EEE--EeCCceEEEEeCCccch
Confidence 998 89999999999998654
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-32 Score=248.43 Aligned_cols=250 Identities=22% Similarity=0.384 Sum_probs=212.2
Q ss_pred ceeccCCCCCCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEE
Q 014934 156 YKILDAPALQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQ 233 (415)
Q Consensus 156 ~~~ld~~~l~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~ 233 (415)
.+...+...+....|+.|.|.| ++-|.+| ..|.+.+|+..+-....+. ..|.+.|+++.|+++|.++++|..+|.|+
T Consensus 85 tKf~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtil-QaHDs~Vr~m~ws~~g~wmiSgD~gG~iK 163 (464)
T KOG0284|consen 85 TKFVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETIL-QAHDSPVRTMKWSHNGTWMISGDKGGMIK 163 (464)
T ss_pred cceEeccccccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHh-hhhcccceeEEEccCCCEEEEcCCCceEE
Confidence 3444444445566799999999 5655555 5699999998443332222 28999999999999999999999999999
Q ss_pred EEECCCCeeeEEecC-CCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe
Q 014934 234 IWDASRCKRVRTMEG-HRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG 310 (415)
Q Consensus 234 iwd~~~~~~~~~l~~-h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~ 310 (415)
+|+..-.. +..+.+ |...|.+++|++ ..|++++.||+|+|||.+... ....+.+|...|.++.|+|...++|+|+
T Consensus 164 yWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k-ee~vL~GHgwdVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 164 YWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK-EERVLRGHGWDVKSVDWHPTKGLIASGS 241 (464)
T ss_pred ecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc-hhheeccCCCCcceeccCCccceeEEcc
Confidence 99987544 444444 559999999994 689999999999999999877 4667899999999999999999999999
Q ss_pred CCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCC
Q 014934 311 NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNV 389 (415)
Q Consensus 311 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~ 389 (415)
.|+.|++||.+++.++.++.+|+..|.++.|+|+++ +|++++ .|..++++|+++.+.+..+. |...|.++.|+|-.
T Consensus 242 kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N-~Llt~s--kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 242 KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN-WLLTGS--KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC-eeEEcc--CCceEEEEehhHhHHHHHhhcchhhheeecccccc
Confidence 999999999999999999999999999999999995 777776 99999999999888888887 78899999999988
Q ss_pred CeEEEEEecCCCcEEEEECCCCc
Q 014934 390 NELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 390 ~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
.-|+++ |+.||.|..|.+...+
T Consensus 319 ~~lfts-gg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 319 ESLFTS-GGSDGSVVHWVVGLEE 340 (464)
T ss_pred ccceee-ccCCCceEEEeccccc
Confidence 877776 7799999999988443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=246.21 Aligned_cols=241 Identities=18% Similarity=0.322 Sum_probs=190.4
Q ss_pred eeEeecCCCcEEEEEcCCeEEEEECCCC----------CeEE---eEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEE
Q 014934 170 LNLVDWSSHNVLAVGLGNCVYLWNACSS----------KVTK---LCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIW 235 (415)
Q Consensus 170 i~~l~ws~~~~la~~~d~~V~iwd~~~~----------~~~~---~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iw 235 (415)
+....|...+++++..+..+..|+...+ +... .+ .+|.+.|++++|+| ++++||+|+.||+|+||
T Consensus 25 ~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIW 103 (493)
T PTZ00421 25 PSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGW 103 (493)
T ss_pred cccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence 4445566556666555555555654333 2111 22 27899999999999 88999999999999999
Q ss_pred ECCCC-------eeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCE
Q 014934 236 DASRC-------KRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305 (415)
Q Consensus 236 d~~~~-------~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 305 (415)
|+.++ +.+..+.+|...|.+++|++ ++|++|+.|++|++||++++. ....+.+|...|.+++|+|+|.+
T Consensus 104 di~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~l 182 (493)
T PTZ00421 104 GIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGSL 182 (493)
T ss_pred ecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-EEEEEcCCCCceEEEEEECCCCE
Confidence 99764 35678899999999999984 589999999999999999876 57778899999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeccCCCc-EEEEEEcCCCCcEEEEEc-CCCCCeEEEEECCCCc-EEEEee--CCCCE
Q 014934 306 LASGGNDNRLFVWNQHSTQPVLKYCEHTAA-VKAIAWSPHLHGLLASGG-GTADRCIRFWNTTTNT-HLSCMD--TGSQV 380 (415)
Q Consensus 306 lasg~~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~sp~~~~llasgg-g~~d~~I~iwd~~t~~-~~~~~~--~~~~V 380 (415)
|++|+.|+.|+|||+++++.+..+.+|.+. +..+.|.+++..++++|. ++.|+.|++||+++.. .+.... ....+
T Consensus 183 Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~ 262 (493)
T PTZ00421 183 LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSAL 262 (493)
T ss_pred EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCce
Confidence 999999999999999999999999888765 457889998875665542 2358999999998754 343333 34556
Q ss_pred EEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 381 ~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
....|+++++.|+++ |..|+.|++|++.+.+.
T Consensus 263 ~~~~~d~d~~~L~lg-gkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 263 FIPFFDEDTNLLYIG-SKGEGNIRCFELMNERL 294 (493)
T ss_pred EEEEEcCCCCEEEEE-EeCCCeEEEEEeeCCce
Confidence 677899999998884 44599999999987653
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=226.15 Aligned_cols=238 Identities=28% Similarity=0.437 Sum_probs=208.2
Q ss_pred cceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
-.|++++|++ +++|+++. ++.|++|+..+++...... .|...+..+.|++++++|++++.+|.|.+||+.+++.+..
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 88 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT 88 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE
Confidence 3589999999 57777775 8999999999887666654 6778899999999999999999999999999998888888
Q ss_pred ecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+..|...+.++.|++ .++++++.|+.|.+||+++.. ....+..|...|.+++|+|++.++++++.|+.|++||++++
T Consensus 89 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 167 (289)
T cd00200 89 LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167 (289)
T ss_pred EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc
Confidence 889999999999995 678888789999999998765 56677789999999999999999999988999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe-eCCCCEEEEEECCCCCeEEEEEecCCCc
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
+.+..+..|...|.+++|+|++..+++ ++ .|+.|++||+.+++.+..+ .+...+.++.|++++..+++ +..++.
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~ 242 (289)
T cd00200 168 KCVATLTGHTGEVNSVAFSPDGEKLLS-SS--SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS--GSEDGT 242 (289)
T ss_pred ccceeEecCccccceEEECCCcCEEEE-ec--CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE--EcCCCc
Confidence 999999899999999999999874555 43 5999999999999988888 56779999999999877777 667999
Q ss_pred EEEEECCCCc
Q 014934 403 IIVWRYPTMS 412 (415)
Q Consensus 403 I~vw~~~s~~ 412 (415)
|++|++.+.+
T Consensus 243 i~i~~~~~~~ 252 (289)
T cd00200 243 IRVWDLRTGE 252 (289)
T ss_pred EEEEEcCCce
Confidence 9999998654
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=224.44 Aligned_cols=235 Identities=28% Similarity=0.474 Sum_probs=198.5
Q ss_pred ceeEeecCC---CcEEEEEcCCeEEEEECCCC-CeEEeEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCCeee
Q 014934 169 YLNLVDWSS---HNVLAVGLGNCVYLWNACSS-KVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 169 ~i~~l~ws~---~~~la~~~d~~V~iwd~~~~-~~~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
.+--++|++ +.+++++.||+++|||.... ..+..++ +|..+|.++.|++ ++..+++++-||+|++|+....+.+
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv 140 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV 140 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcce
Confidence 366889998 34566668999999995433 3344444 8999999999998 5677888899999999999999999
Q ss_pred EEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEE
Q 014934 244 RTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWN 319 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd 319 (415)
.++.+|...|...+|+ ++.+++++.|+++++||++...+.+ .+..|..+|.++.|+. +.+.|+||+.|+.|++||
T Consensus 141 ~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD 219 (311)
T KOG0277|consen 141 QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD 219 (311)
T ss_pred EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee-EEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence 9999999999999999 5899999999999999999987544 4889999999999997 778899999999999999
Q ss_pred CCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-EEEEee-CCCCEEEEEECCCCCeEEEEE
Q 014934 320 QHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCMD-TGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 320 ~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-~~~~~~-~~~~V~~l~~s~~~~~l~s~~ 396 (415)
+++- .++..+.+|.-+|..++|+|....+||+++ .|-+++|||...+. ++..++ |...|+++.|++...-.++.
T Consensus 220 ir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSas--YDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs- 296 (311)
T KOG0277|consen 220 IRNLRTPLFELNGHGLAVRKVKFSPHHASLLASAS--YDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAS- 296 (311)
T ss_pred hhhccccceeecCCceEEEEEecCcchhhHhhhcc--ccceEEecccccchhhhhhhhccceEEeccccccccCceeee-
Confidence 9875 678899999999999999999999999998 99999999998554 344444 45669999999975444444
Q ss_pred ecCCCcEEEEEC
Q 014934 397 GYSQNQIIVWRY 408 (415)
Q Consensus 397 g~~dg~I~vw~~ 408 (415)
.+-|+.++||+-
T Consensus 297 ~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 297 TGWDELLYVWNP 308 (311)
T ss_pred cccccceeeecc
Confidence 347999999984
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=240.08 Aligned_cols=230 Identities=21% Similarity=0.386 Sum_probs=204.5
Q ss_pred ceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecC
Q 014934 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG 248 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~ 248 (415)
.|.|+.+..+.++....|++|+|||..+-.+.+.+. +|++.|.|+.|. .+.|++|+.|.+|++||.++++++.++-+
T Consensus 199 gVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlih 275 (499)
T KOG0281|consen 199 GVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIH 275 (499)
T ss_pred ceEEEEecchhhhcccccCceEEeccccHHHHHhhh-cCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhh
Confidence 477999987777777789999999999988887776 999999999985 55999999999999999999999999999
Q ss_pred CCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCc--cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Q 014934 249 HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQED--FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV 326 (415)
Q Consensus 249 h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~ 326 (415)
|...|..+.|+.+++++++.|.+|.+||+..... +.+.+.||...|+.+.|+ .+++++++.|.+|++|++.+++.+
T Consensus 276 HceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efv 353 (499)
T KOG0281|consen 276 HCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFV 353 (499)
T ss_pred hcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeee
Confidence 9999999999999999999999999999987752 345678999999999996 569999999999999999999999
Q ss_pred EEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEE
Q 014934 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (415)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~v 405 (415)
.++.+|+..|.|+.+. + .++++|+ .|.+|++||+..|.++..++ |..-|.++.|. .+.+++ |.-||+|+|
T Consensus 354 Rtl~gHkRGIAClQYr--~-rlvVSGS--SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVS--GaYDGkikv 424 (499)
T KOG0281|consen 354 RTLNGHKRGIACLQYR--D-RLVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVS--GAYDGKIKV 424 (499)
T ss_pred hhhhcccccceehhcc--C-eEEEecC--CCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeee--ccccceEEE
Confidence 9999999999888765 3 3888887 99999999999999999887 55668889985 567888 888999999
Q ss_pred EECCCCc
Q 014934 406 WRYPTMS 412 (415)
Q Consensus 406 w~~~s~~ 412 (415)
||+....
T Consensus 425 Wdl~aal 431 (499)
T KOG0281|consen 425 WDLQAAL 431 (499)
T ss_pred Eeccccc
Confidence 9998754
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=232.95 Aligned_cols=234 Identities=24% Similarity=0.446 Sum_probs=210.4
Q ss_pred cceeEeecCC-CcEEEE-EcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAV-GLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~-~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
-.|..+.|+. +++|++ +.|+++.+||..++.+.+.+.+ |..+-..|.|-.+ ..+++++.||.|+++.+....++.+
T Consensus 277 gPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~-~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t 354 (524)
T KOG0273|consen 277 GPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF-HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKT 354 (524)
T ss_pred CceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee-ccCCccceEEecC-ceEeecCCCceEEEEEecCCCccee
Confidence 3588999999 555555 5799999999999999988874 4555578899754 4588889999999999999999999
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCC---------CEEEEEeCCCc
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN---------RELASGGNDNR 314 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg---------~~lasg~~dg~ 314 (415)
+.+|.+.|.+|.|+ +.+|++++.|++++||...... ..+.+.+|..+|..+.|+|+| ..+|+++.|++
T Consensus 355 ~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst 433 (524)
T KOG0273|consen 355 FIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST 433 (524)
T ss_pred eecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence 99999999999999 6899999999999999987766 678899999999999999964 47999999999
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 315 LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 315 I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
|++||+..+.+++.|..|+.+|.+++|+|+|+ ++|+|+ .||.|.+|++++++.+++......|..++|+.+|..|.+
T Consensus 434 V~lwdv~~gv~i~~f~kH~~pVysvafS~~g~-ylAsGs--~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~ 510 (524)
T KOG0273|consen 434 VKLWDVESGVPIHTLMKHQEPVYSVAFSPNGR-YLASGS--LDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGA 510 (524)
T ss_pred EEEEEccCCceeEeeccCCCceEEEEecCCCc-EEEecC--CCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEE
Confidence 99999999999999999999999999999998 788877 999999999999999999998888999999999999988
Q ss_pred EEecCCCcEEEEECC
Q 014934 395 THGYSQNQIIVWRYP 409 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~ 409 (415)
..+|+.+++-|+.
T Consensus 511 --~~sd~~vcvldlr 523 (524)
T KOG0273|consen 511 --CASDGSVCVLDLR 523 (524)
T ss_pred --EecCCCceEEEec
Confidence 6789999998874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-30 Score=251.77 Aligned_cols=195 Identities=25% Similarity=0.406 Sum_probs=182.4
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
-.|....|+| .++|..+ .|.+|++|.+.+......+. +|..+|..|.|+|.|-++|+|+.|++.++|........+.
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence 3578899999 6666666 57999999999998888887 9999999999999999999999999999999999999999
Q ss_pred ecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+.+|.+.|.|+.|+| +++++||.|.++++||+.++. .++.+.||.++|.+|+|||+|++||+|+.||.|.|||+.++
T Consensus 531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred hcccccccceEEECCcccccccCCCCceEEEEEcCCCc-EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 999999999999995 799999999999999999998 68999999999999999999999999999999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t 367 (415)
+.+..+.+|++.|.++.|+.+|. +||+|| .|.+|++||+..
T Consensus 610 ~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg--~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 610 SLVKQLKGHTGTIYSLSFSRDGN-VLASGG--ADNSVRLWDLTK 650 (707)
T ss_pred cchhhhhcccCceeEEEEecCCC-EEEecC--CCCeEEEEEchh
Confidence 99999999999999999999997 888887 799999999864
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=244.17 Aligned_cols=239 Identities=18% Similarity=0.326 Sum_probs=217.9
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.|-+++++| .-++.++ ..|.|.|||.++...++.++. ..-+|.+..|-+..+++++|+.|..|+||+..+++.+..+
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F 93 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF 93 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccceEEEecCCceEEEEecccceeeEEe
Confidence 477999999 5555555 689999999999988888874 3578999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCC
Q 014934 247 EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 247 ~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~ 323 (415)
+.|...|.+++.+| -+++++|.|-+|++||.+..-.+.+++.+|..-|.+++|+| |.+.||+++-|++|+||.+.+.
T Consensus 94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC
Confidence 99999999999996 58999999999999999998888899999999999999999 7789999999999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCCC-cEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCC
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLH-GLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQN 401 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~-~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg 401 (415)
.+..++++|...|+++.+-+.|. -.|++|+ .|.+|+|||..+..|+++++ |...|..+.|+|.-..+++ |++||
T Consensus 174 ~~nfTl~gHekGVN~Vdyy~~gdkpylIsga--DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis--gsEDG 249 (794)
T KOG0276|consen 174 HPNFTLEGHEKGVNCVDYYTGGDKPYLISGA--DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS--GSEDG 249 (794)
T ss_pred CCceeeeccccCcceEEeccCCCcceEEecC--CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE--ecCCc
Confidence 99999999999999999988763 3666766 89999999999999999998 6678999999999999999 99999
Q ss_pred cEEEEECCCCc
Q 014934 402 QIIVWRYPTMS 412 (415)
Q Consensus 402 ~I~vw~~~s~~ 412 (415)
+++||+-.+.+
T Consensus 250 TvriWhs~Ty~ 260 (794)
T KOG0276|consen 250 TVRIWNSKTYK 260 (794)
T ss_pred cEEEecCccee
Confidence 99999987754
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=245.34 Aligned_cols=242 Identities=25% Similarity=0.372 Sum_probs=208.6
Q ss_pred CCCcceeEeecCC-CcEEEEE-cCCeEEEEEC-CCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 165 QDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNA-CSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 165 ~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~-~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
.....|+.++|+| +.+++.+ .|.+|+|||+ ..+..++.+. +|...|++++|+|+|+++++|+.|++|+|||+++++
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence 4567899999999 6677776 5789999999 5557777776 999999999999999999999999999999999999
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc-cEEEeccccCC--eEEEEEeCCCCEEEEEeCCCcEE
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED-FVSKLSGHKSE--VCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~--V~~l~~spdg~~lasg~~dg~I~ 316 (415)
+++.+.+|...|++++|+ +++|++++.|+.|++||+.++.. +...+.++... ++.++|+|++.+|+++..|+.++
T Consensus 280 ~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 280 CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 999999999999999998 68999999999999999998873 24556666555 99999999999999999999999
Q ss_pred EEECCCCceeEEeccCCCcE---EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-C-CCCEEEEEECCCCCe
Q 014934 317 VWNQHSTQPVLKYCEHTAAV---KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-T-GSQVCNLVWSKNVNE 391 (415)
Q Consensus 317 iwd~~~~~~~~~~~~h~~~V---~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~-~~~V~~l~~s~~~~~ 391 (415)
+||+..+..+..+.+|...+ .+...++.+. ++.+|+ .|+.|++||+.++..+..+. + ...+..+.|++..++
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~--~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~ 436 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGS--EDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENL 436 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCC-eEEEEe--CCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCe
Confidence 99999999999999988754 3334466666 666666 89999999999988888776 4 577899999999999
Q ss_pred EEEEEecCCCcEEEEECCC
Q 014934 392 LVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s 410 (415)
+++.....|+.|++|.++-
T Consensus 437 ~~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 437 IASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred eeecCcCCCceEEEecCCC
Confidence 9995434789999999763
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=219.35 Aligned_cols=238 Identities=21% Similarity=0.352 Sum_probs=201.8
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
-.|+.+.|+| +.++|+| .|..|.+|+............+|.+.|..+.|.+|++.|++++.|.+|+.||++++++++.
T Consensus 48 geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk 127 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK 127 (338)
T ss_pred ceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh
Confidence 3488999999 7777777 6899999996554332222238999999999999999999999999999999999999999
Q ss_pred ecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 246 MEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 246 l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
+++|..-|+.+... +.++.+|+.||++++||+|... .++++. .+.+++++.|..++..+.+|+-|+.|++||++.
T Consensus 128 ~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~ 205 (338)
T KOG0265|consen 128 HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK 205 (338)
T ss_pred hccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhccc-cceeEEEEEecccccceeeccccCceeeecccc
Confidence 99999999999865 5789999999999999999877 344443 456899999999999999999999999999999
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC----cEEEEeeC-----CCCEEEEEECCCCCeEE
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN----THLSCMDT-----GSQVCNLVWSKNVNELV 393 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~----~~~~~~~~-----~~~V~~l~~s~~~~~l~ 393 (415)
...++.+.+|...|+.+..+|+|..++. -+ .|.++++||++-- .++..+.. +.....++|+|+++.+.
T Consensus 206 ~d~~~~lsGh~DtIt~lsls~~gs~lls-ns--Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ 282 (338)
T KOG0265|consen 206 NDGLYTLSGHADTITGLSLSRYGSFLLS-NS--MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT 282 (338)
T ss_pred CcceEEeecccCceeeEEeccCCCcccc-cc--ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccc
Confidence 9999999999999999999999985555 33 8999999999752 33554432 23366789999999998
Q ss_pred EEEecCCCcEEEEECCCCc
Q 014934 394 STHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s~~ 412 (415)
+ |+.|..+++||..+..
T Consensus 283 a--gs~dr~vyvwd~~~r~ 299 (338)
T KOG0265|consen 283 A--GSADRFVYVWDTTSRR 299 (338)
T ss_pred c--ccccceEEEeeccccc
Confidence 8 8999999999987744
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-28 Score=211.66 Aligned_cols=232 Identities=25% Similarity=0.378 Sum_probs=194.9
Q ss_pred ceeEeecCCC--cEEEEE-cCCeEEEEECCCCC---eEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC--C
Q 014934 169 YLNLVDWSSH--NVLAVG-LGNCVYLWNACSSK---VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR--C 240 (415)
Q Consensus 169 ~i~~l~ws~~--~~la~~-~d~~V~iwd~~~~~---~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~--~ 240 (415)
.+..++|+|+ .+||++ .|..|+||+...+. +...+.-+|...|.+|+|+|.|++||+|+.|.++.||.-.. .
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF 95 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce
Confidence 4778999995 478877 47899999988432 33333337899999999999999999999999999998654 4
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC--ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
+++.+++||...|.|++|+ +++|+++++|+.|-||.+.... .+...++.|.+.|..+.|+|...+|++++.|++|+
T Consensus 96 ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk 175 (312)
T KOG0645|consen 96 ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIK 175 (312)
T ss_pred eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEE
Confidence 7899999999999999998 7999999999999999998544 45778999999999999999999999999999999
Q ss_pred EEECC---CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEE
Q 014934 317 VWNQH---STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 317 iwd~~---~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~ 393 (415)
+|+-. ...+++++.+|...|.+++|++.|. -|++++ .|++++||-..+.- ...+..+++.+.|. ...|+
T Consensus 176 ~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~s--dD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~Ia 247 (312)
T KOG0645|consen 176 VYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCS--DDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVIA 247 (312)
T ss_pred EEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEec--CCcceEeeeeccCc---chhcccceEeeeec--ccceE
Confidence 99876 3468899999999999999999996 666666 89999999876331 11256789999999 34566
Q ss_pred EEEecCCCcEEEEECCC
Q 014934 394 STHGYSQNQIIVWRYPT 410 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s 410 (415)
+ ++.|+.|++|.-..
T Consensus 248 S--~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 248 S--GGGDDAIRLFKESD 262 (312)
T ss_pred e--ccCCCEEEEEEecC
Confidence 6 66799999998653
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-27 Score=220.06 Aligned_cols=232 Identities=27% Similarity=0.464 Sum_probs=202.8
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.+..+.|++ ++.|+++ .++.|++|+..+++....+. .|...|.++.|++++.++++++.+|.|.+||+.+++.+..+
T Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred ceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe
Confidence 467889999 5456555 58999999999877666665 67779999999999999988888999999999999988889
Q ss_pred cCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 247 EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 247 ~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
..|...|.+++|++ .++++++.|+.|++||++... ....+..|...|.++.|+|+++.|++++.|+.|++||++.++
T Consensus 132 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 99999999999995 677777779999999998766 466777888899999999999999999999999999999999
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcE
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I 403 (415)
.+..+..|...+.+++|+|++. ++++++ .|+.|++||+.+++.+..+. +...|.++.|+++++.|++ ++.|+.|
T Consensus 211 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i 285 (289)
T cd00200 211 CLGTLRGHENGVNSVAFSPDGY-LLASGS--EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS--GSADGTI 285 (289)
T ss_pred eecchhhcCCceEEEEEcCCCc-EEEEEc--CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE--ecCCCeE
Confidence 9988888999999999999954 777765 79999999999988887776 5568999999999999998 7789999
Q ss_pred EEEE
Q 014934 404 IVWR 407 (415)
Q Consensus 404 ~vw~ 407 (415)
++|+
T Consensus 286 ~iw~ 289 (289)
T cd00200 286 RIWD 289 (289)
T ss_pred EecC
Confidence 9996
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=238.84 Aligned_cols=236 Identities=23% Similarity=0.398 Sum_probs=203.4
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
..+++++++| +.++|+| .|++|+|||..++-+...+. .|+..|+.+.|+..|+.+++.+-||+|+.||+...+..++
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRT 429 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRT 429 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeee
Confidence 3589999999 7888888 57999999999999988887 8999999999999999999999999999999999999999
Q ss_pred ecCC-CccEEEEEee--CCEEEEEeCCC-cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 246 MEGH-RLRVGALAWS--SSLLSSGSRDK-SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 246 l~~h-~~~V~~l~~~--~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
+... .....|++.+ +.+++.|+.|. .|.+|++.++. .+..+.||.++|.+++|+|++..||+|+.|++|++||+-
T Consensus 430 ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 430 FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 8753 3345677776 78888888887 59999999997 788999999999999999999999999999999999986
Q ss_pred CCc-eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC---------------------CCC
Q 014934 322 STQ-PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---------------------GSQ 379 (415)
Q Consensus 322 ~~~-~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~---------------------~~~ 379 (415)
... .+.++ .+...|.+++|+|+|+.+.++. .||.|.|||...+..+..++. +..
T Consensus 509 ~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaT---ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~ 584 (893)
T KOG0291|consen 509 SSSGTVETL-EIRSDVLAVSFRPDGKELAVAT---LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT 584 (893)
T ss_pred ccCceeeeE-eeccceeEEEEcCCCCeEEEEE---ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc
Confidence 553 33344 6778899999999999666554 799999999998776655431 235
Q ss_pred EEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 380 V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
.+.+++++||..+++ |+..+.|++|++++.
T Consensus 585 Ftti~ySaDG~~IlA--gG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 585 FTTICYSADGKCILA--GGESNSICIYDVPEG 614 (893)
T ss_pred eEEEEEcCCCCEEEe--cCCcccEEEEECchh
Confidence 789999999999999 889999999999875
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=255.38 Aligned_cols=233 Identities=19% Similarity=0.354 Sum_probs=199.3
Q ss_pred cceeEeecCC--CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCCeee
Q 014934 168 FYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 168 ~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
..+.+++|++ +.+|+++ .|+.|++||+.+++....+. +|.+.|++++|+| ++.+|++|+.||.|++||+.++..+
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 3577899987 4566666 68999999999988776665 8899999999997 7899999999999999999999888
Q ss_pred EEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 244 RTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
..+..+ ..|.++.|. +.+|++|+.||.|++||++........+.+|...|.++.|. ++.+|++++.|+.|+|||+
T Consensus 612 ~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 612 GTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred EEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence 888754 679999995 57999999999999999998764567788999999999997 7889999999999999999
Q ss_pred CC------CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--------------CCCCE
Q 014934 321 HS------TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--------------TGSQV 380 (415)
Q Consensus 321 ~~------~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--------------~~~~V 380 (415)
.. ..++..+.+|...+..++|+|++. +|++|+ .|+.|++|+......+..+. +...|
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs--~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V 766 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGS--ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI 766 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEe--CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE
Confidence 74 357888999999999999999986 788877 89999999987665432221 23458
Q ss_pred EEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 381 CNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 381 ~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
.+++|++++..|++ |+.+|.|+||++
T Consensus 767 ~~v~ws~~~~~lva--~~~dG~I~i~~~ 792 (793)
T PLN00181 767 SSVCWRGQSSTLVA--ANSTGNIKILEM 792 (793)
T ss_pred EEEEEcCCCCeEEE--ecCCCcEEEEec
Confidence 99999999999999 788999999986
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=211.02 Aligned_cols=236 Identities=20% Similarity=0.334 Sum_probs=205.4
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.|+.+.|+- +..|++|.|.+|++||...+.+++.+. +|..+|..++.+.|...+++|+.|..|.+||+.+++.++.+
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec
Confidence 488889987 456777899999999999999999997 89999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC-ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
.+|.+.|+.+.|+ ...+++|+.|.++++||.|+.. ++++.+......|.++..+ +..+++|+.||+++.||++.|
T Consensus 98 rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G 175 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKG 175 (307)
T ss_pred ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecc
Confidence 9999999999999 4799999999999999999764 4677777788889999886 668999999999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCC--EEEEEECCCCCeEEEEEecCC
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQ--VCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~--V~~l~~s~~~~~l~s~~g~~d 400 (415)
+...-+- ..+|+++.|+++++..|+++ .|++|++.|-.+|+.+..+. |.+. -...+++.....+++ |++|
T Consensus 176 ~l~sDy~--g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~s--gSED 248 (307)
T KOG0316|consen 176 TLSSDYF--GHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS--GSED 248 (307)
T ss_pred eeehhhc--CCcceeEEecCCCCEEEEee---ccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEe--ccCC
Confidence 8766554 45799999999999777755 79999999999999998876 3333 344667777777777 8999
Q ss_pred CcEEEEECCCCccc
Q 014934 401 NQIIVWRYPTMSKV 414 (415)
Q Consensus 401 g~I~vw~~~s~~~l 414 (415)
|.+.+||+....++
T Consensus 249 G~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 249 GKVYFWDLVDETQI 262 (307)
T ss_pred ceEEEEEeccceee
Confidence 99999999776543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=240.75 Aligned_cols=251 Identities=22% Similarity=0.300 Sum_probs=213.8
Q ss_pred CCCCCCCCCCceeccCCCCCCCcceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeE
Q 014934 146 KAPRKVPRSPYKILDAPALQDDFYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHL 223 (415)
Q Consensus 146 k~~r~i~~~p~~~ld~~~l~~~~~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~l 223 (415)
+..++|......++|... |.| .+.||++. .+.+++|+..+..+. ++. +|++.|.++....+|.+|
T Consensus 314 ~i~k~ivG~ndEI~Dm~~-----------lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~-GH~e~vlSL~~~~~g~ll 380 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKF-----------LGPEESHLAVATNSPELRLYTLPTSYCQ-IIP-GHTEAVLSLDVWSSGDLL 380 (775)
T ss_pred EEehhhcCCchhheeeee-----------cCCccceEEEEeCCCceEEEecCCCceE-EEe-CchhheeeeeecccCcEE
Confidence 334556666666666543 455 57788885 579999999888876 443 999999999977788999
Q ss_pred EEEECCCcEEEEECCCC----eeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCC--c--cEE----Eec
Q 014934 224 AVGTSHGKVQIWDASRC----KRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQE--D--FVS----KLS 288 (415)
Q Consensus 224 a~g~~dg~V~iwd~~~~----~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~--~--~~~----~~~ 288 (415)
++|+.|.+|++|.++.+ .++....+|...|++++++ ..+|+++|.|++|++|++...+ . ... ...
T Consensus 381 at~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 381 ATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred EEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence 99999999999987433 3455667999999999998 4799999999999999998722 1 111 335
Q ss_pred cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC
Q 014934 289 GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (415)
Q Consensus 289 ~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~ 368 (415)
.|...|++++++|+..++|||+.|.+.+||++.....+..+.+|+..|.++.|+|..+ ++++++ .|++|+||.+.+.
T Consensus 461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~S--gD~TvKIW~is~f 537 (775)
T KOG0319|consen 461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ-LLATCS--GDKTVKIWSISTF 537 (775)
T ss_pred hhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccc-eeEecc--CCceEEEEEeccc
Confidence 7999999999999999999999999999999999999999999999999999999976 888888 6999999999999
Q ss_pred cEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 369 THLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 369 ~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
.+++++. |.+.|..+.|-.+|..|++ ++.||-|++|++.+.+.+
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~qliS--~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQLIS--AGADGLIKLWNIKTNECE 582 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEEEe--ccCCCcEEEEeccchhhh
Confidence 9999998 7889999999999999999 779999999999987654
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-28 Score=208.30 Aligned_cols=221 Identities=18% Similarity=0.308 Sum_probs=188.5
Q ss_pred EEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe--eeEEecCCCccEEEEEee
Q 014934 182 AVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--RVRTMEGHRLRVGALAWS 259 (415)
Q Consensus 182 a~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~~~ 259 (415)
.+|.|.+|++|.+.+|.+.+.+. ...+.|..+++.|+++.||+++.. .|++||+.+++ ++.++.+|...|+++.|.
T Consensus 15 sA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~ 92 (311)
T KOG0315|consen 15 SAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQ 92 (311)
T ss_pred eccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEe
Confidence 33468999999999999999886 446789999999999999998765 69999998765 688999999999999998
Q ss_pred --CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCcE
Q 014934 260 --SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAV 336 (415)
Q Consensus 260 --~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~-~h~~~V 336 (415)
++.+++|+.||+++|||+|... ......|..+|+++..+|+...|++|.++|.|+|||+.+..+...+. +....|
T Consensus 93 ~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i 170 (311)
T KOG0315|consen 93 CDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSI 170 (311)
T ss_pred ecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcce
Confidence 8999999999999999999965 34445678999999999999999999999999999999876655553 345689
Q ss_pred EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE------EEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL------SCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~------~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.++...|+|..+.+.. ..|..++|++.+++.. ..+. |...+..+.+||++++|++ .++|.+++||+.+
T Consensus 171 ~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat--~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT--CSSDKTVKIWNTD 245 (311)
T ss_pred eeEEEcCCCcEEEEec---CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe--ecCCceEEEEecC
Confidence 9999999998555543 6899999999875432 2333 6678999999999999999 5689999999999
Q ss_pred CC
Q 014934 410 TM 411 (415)
Q Consensus 410 s~ 411 (415)
.+
T Consensus 246 ~~ 247 (311)
T KOG0315|consen 246 DF 247 (311)
T ss_pred Cc
Confidence 87
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=222.57 Aligned_cols=232 Identities=19% Similarity=0.355 Sum_probs=206.6
Q ss_pred eeEeecCC-CcEEEEEc-CCeEEEEECCCC-CeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 170 LNLVDWSS-HNVLAVGL-GNCVYLWNACSS-KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~-d~~V~iwd~~~~-~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
+..+.++. +.+|+.++ |-.+.+||..+. ++.+.. .+|.-.|.+++|-|.|.++++++.|.+|+.|++.++-++.++
T Consensus 153 v~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~ 231 (406)
T KOG0295|consen 153 VFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF 231 (406)
T ss_pred eeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEec
Confidence 77888888 78888875 445999998773 333333 388899999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC---------------CCEEEEE
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD---------------NRELASG 309 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd---------------g~~lasg 309 (415)
.+|..-|..+..+ +.++++++.|.++++|-+.++. +...+..|+.+|.+++|-|. +++++++
T Consensus 232 ~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 232 PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ-CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch-hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence 9999999999988 6799999999999999999886 56778899999999999763 3589999
Q ss_pred eCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCC
Q 014934 310 GNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKN 388 (415)
Q Consensus 310 ~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~ 388 (415)
+.|++|++||+.++.++.++.+|...|..++|+|.|++|+.++ .|+++++||++++++...+. +...|+++.|..+
T Consensus 311 SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca---DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~ 387 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA---DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKT 387 (406)
T ss_pred cccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe---cCCcEEEEEeccceeeeccCCCcceeEEEecCCC
Confidence 9999999999999999999999999999999999999666555 79999999999999998887 6678999999999
Q ss_pred CCeEEEEEecCCCcEEEEEC
Q 014934 389 VNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~ 408 (415)
..++++ |+-|-.+++|..
T Consensus 388 ~p~VvT--GsVdqt~KvwEc 405 (406)
T KOG0295|consen 388 APYVVT--GSVDQTVKVWEC 405 (406)
T ss_pred CceEEe--ccccceeeeeec
Confidence 998888 889999999974
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=206.76 Aligned_cols=231 Identities=24% Similarity=0.444 Sum_probs=193.1
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC---Ce
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR---CK 241 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~---~~ 241 (415)
-.|..++|+| +++||++ .|.++.||.-..++...+-.+ +|...|.|++|+++|.+||+++.|..|-||.+.. .+
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred heeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence 4689999999 8899998 589999999877765444333 9999999999999999999999999999999974 35
Q ss_pred eeEEecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCC--ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 014934 242 RVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~i 317 (415)
++..++.|...|..+.|+| .+|++++.|.+|++|+-.... .++.++.+|...|.+++|++.|..|+++++|++|+|
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence 7888999999999999998 899999999999999876322 467889999999999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc------EEEEe--eCCCCEEEEEECCC-
Q 014934 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT------HLSCM--DTGSQVCNLVWSKN- 388 (415)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~------~~~~~--~~~~~V~~l~~s~~- 388 (415)
|-..+.-+ ..|..++..++|. + .++++++ .|+.|++|.-..+- .+... .|+..|++++|.|.
T Consensus 222 w~~~~~~~----~~~sr~~Y~v~W~-~--~~IaS~g--gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~ 292 (312)
T KOG0645|consen 222 WRLYTDLS----GMHSRALYDVPWD-N--GVIASGG--GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV 292 (312)
T ss_pred eeeccCcc----hhcccceEeeeec-c--cceEecc--CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC
Confidence 99763321 1478899999999 3 4899988 69999999776431 11111 26678999999995
Q ss_pred CCeEEEEEecCCCcEEEEECC
Q 014934 389 VNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.+.|++ |++||.|++|.+.
T Consensus 293 ~~~L~s--~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLAS--GGDDGIVNFWELE 311 (312)
T ss_pred CCceee--cCCCceEEEEEec
Confidence 566776 7899999999875
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=239.82 Aligned_cols=236 Identities=26% Similarity=0.429 Sum_probs=201.8
Q ss_pred ceeEee-cCCCcEEEEEc-CCeEEEEECCCCCeEEeEe---cCCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCCCee
Q 014934 169 YLNLVD-WSSHNVLAVGL-GNCVYLWNACSSKVTKLCD---LGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 169 ~i~~l~-ws~~~~la~~~-d~~V~iwd~~~~~~~~~~~---~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.|.+++ |+.+.+|++++ |++|++|.++.+.....+. .+|+..|.+|+++..+ .+|++++.|+++++|++...+.
T Consensus 367 ~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~ 446 (775)
T KOG0319|consen 367 AVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE 446 (775)
T ss_pred heeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccc
Confidence 466677 88887888885 8999999884443222211 2899999999998755 6999999999999999975221
Q ss_pred -----eE----EecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 243 -----VR----TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 243 -----~~----~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
+. +...|...|+|++.++ .++++||.|++.++|++.... ....+.+|...|.++.|+|..+.+||++.
T Consensus 447 ~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg 525 (775)
T KOG0319|consen 447 TAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-LLGVLSGHTRGVWCVSFSKNDQLLATCSG 525 (775)
T ss_pred ccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-EEEEeeCCccceEEEEeccccceeEeccC
Confidence 11 2346999999999984 699999999999999999655 78899999999999999999999999999
Q ss_pred CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCC
Q 014934 312 DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVN 390 (415)
Q Consensus 312 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~ 390 (415)
|++|+||.+.+..++.+|++|..+|..+.|-.+|..|+. ++ .||.|++||+.+++|+.+++ |...|++++-++...
T Consensus 526 D~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS-~~--adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 526 DKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLIS-AG--ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLD 602 (775)
T ss_pred CceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEe-cc--CCCcEEEEeccchhhhhhhhhccceeEEEeecCccc
Confidence 999999999999999999999999999999999985554 44 69999999999999999998 788999999999999
Q ss_pred eEEEEEecCCCcEEEEECCC
Q 014934 391 ELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 391 ~l~s~~g~~dg~I~vw~~~s 410 (415)
.+++ |+.||.|.+|.=.+
T Consensus 603 ~~~t--gg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 603 MFVT--GGGDGRIIFWKDVT 620 (775)
T ss_pred eeEe--cCCCeEEEEeecCc
Confidence 8888 88999999998554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-27 Score=212.01 Aligned_cols=233 Identities=24% Similarity=0.406 Sum_probs=201.5
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.+.+++.+| .+++|+| .|..-++|+..+++....+. +|.+.|+++.|+.+|.+||+|..+|.|+||+..++.....+
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~ 144 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL 144 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec-CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe
Confidence 366788888 6777777 46789999999999766665 99999999999999999999999999999999999888777
Q ss_pred cCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 247 EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 247 ~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
..-...+.-|.|+| .+|+.|+.||.+.+|.+.+.. ..+.+.+|..++++=.|.|+|+.+++|..||+|++||.++++
T Consensus 145 ~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 145 DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred ecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc
Confidence 65566777888884 799999999999999999875 578899999999999999999999999999999999998765
Q ss_pred eeEEe---------------------------------------------------------------------------
Q 014934 325 PVLKY--------------------------------------------------------------------------- 329 (415)
Q Consensus 325 ~~~~~--------------------------------------------------------------------------- 329 (415)
+++++
T Consensus 224 p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~ 303 (399)
T KOG0296|consen 224 PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAAC 303 (399)
T ss_pred eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhc
Confidence 44433
Q ss_pred --------------------ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCC
Q 014934 330 --------------------CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKN 388 (415)
Q Consensus 330 --------------------~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~ 388 (415)
-.|..+|..+.|-+ ..+|++++ .+|.|+.||.++|+++..+. |...|..++++|+
T Consensus 304 G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c---~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~ 379 (399)
T KOG0296|consen 304 GSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTAC---ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ 379 (399)
T ss_pred ccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeec---cCceEEeeeccccceEEEEecCchheeEEEEcCC
Confidence 13666788888988 56677665 69999999999999998886 6678999999999
Q ss_pred CCeEEEEEecCCCcEEEEECC
Q 014934 389 VNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.+.+++ ++.|++.+||+++
T Consensus 380 ~~~vvT--~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 380 KRLVVT--VSDDNTALVFEVP 398 (399)
T ss_pred CcEEEE--ecCCCeEEEEecC
Confidence 999999 6789999999986
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=248.02 Aligned_cols=238 Identities=18% Similarity=0.360 Sum_probs=195.0
Q ss_pred CCcceeEeecCC-CcEEEEE-cCCeEEEEECCCC----Ce--EEeEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEE
Q 014934 166 DDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSS----KV--TKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWD 236 (415)
Q Consensus 166 ~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~----~~--~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd 236 (415)
....|.+++|++ +++||+| .|+.|+||+..+. .. .....+.+...|.+++|++ ++.+||+|+.||.|+|||
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 355699999999 7777666 5899999997542 11 1112223457899999987 578999999999999999
Q ss_pred CCCCeeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEe-CCCCEEEEEeCC
Q 014934 237 ASRCKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS-YDNRELASGGND 312 (415)
Q Consensus 237 ~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~lasg~~d 312 (415)
+.+++.+..+.+|...|.+++|+ +.+|++|+.||+|++||++.+. .+..+..+ ..|+++.|+ ++|.+||+|+.|
T Consensus 562 ~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~-~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 562 VARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTK-ANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecC-CCeEEEEEeCCCCCEEEEEeCC
Confidence 99999999999999999999997 3689999999999999999876 45566544 679999995 579999999999
Q ss_pred CcEEEEECCCCc-eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC------cEEEEee-CCCCEEEEE
Q 014934 313 NRLFVWNQHSTQ-PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN------THLSCMD-TGSQVCNLV 384 (415)
Q Consensus 313 g~I~iwd~~~~~-~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~------~~~~~~~-~~~~V~~l~ 384 (415)
|.|++||+++.+ ++..+.+|...|.++.|. ++. .+++++ .|+.|++||+..+ ..+..+. +...+..+.
T Consensus 640 g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s--~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSS--TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred CeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEE--CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999998765 577788999999999997 444 666666 7999999999753 4555654 566788999
Q ss_pred ECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 385 WSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 385 ~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
|++++.+|++ |+.|+.|++|+....
T Consensus 716 ~s~~~~~las--gs~D~~v~iw~~~~~ 740 (793)
T PLN00181 716 LSVSDGYIAT--GSETNEVFVYHKAFP 740 (793)
T ss_pred EcCCCCEEEE--EeCCCEEEEEECCCC
Confidence 9999999998 889999999997543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=208.51 Aligned_cols=238 Identities=20% Similarity=0.367 Sum_probs=198.8
Q ss_pred eEeecCC--CcEEEEE--------cCCeEEEEECC-CCCeEEeEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECC
Q 014934 171 NLVDWSS--HNVLAVG--------LGNCVYLWNAC-SSKVTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 171 ~~l~ws~--~~~la~~--------~d~~V~iwd~~-~~~~~~~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~ 238 (415)
..+.||| .+.||++ ..|.++|.+.. .+.+.....+.-.+.+..|+|++. .+.+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 4778998 5555543 24789999996 445555555566889999999985 4688889999999999964
Q ss_pred C-CeeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCC
Q 014934 239 R-CKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDN 313 (415)
Q Consensus 239 ~-~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg 313 (415)
. .+++..++.|...|.++.|+ ...+++++.|++|++||...+. .+.++.+|..-|...+|+| .+++|++++.|+
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 3 46888999999999999999 4678888999999999998877 5888999999999999999 788999999999
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-EEEEee-CCCCEEEEEECCCCCe
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCMD-TGSQVCNLVWSKNVNE 391 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-~~~~~~-~~~~V~~l~~s~~~~~ 391 (415)
.+++||++..-....+..|...+.++.|+...++++++|+ .|+.|+.||++.-+ ++.++. |+-.|..+.|||...-
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~--vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG--VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC--CCceEEEEehhhccccceeecCCceEEEEEecCcchhh
Confidence 9999999875444558899999999999999999999998 99999999998743 455554 6677999999998776
Q ss_pred EEEEEecCCCcEEEEECCCCc
Q 014934 392 LVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s~~ 412 (415)
|+++ .+-|-+++|||+....
T Consensus 249 lLaS-asYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 249 LLAS-ASYDMTVRIWDPERQD 268 (311)
T ss_pred Hhhh-ccccceEEecccccch
Confidence 6655 4578999999997543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=220.19 Aligned_cols=241 Identities=22% Similarity=0.358 Sum_probs=194.6
Q ss_pred CcceeEeecCC-C-cEEEEEcCCeEEEEECCCCCeEEeEec--CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 167 DFYLNLVDWSS-H-NVLAVGLGNCVYLWNACSSKVTKLCDL--GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 167 ~~~i~~l~ws~-~-~~la~~~d~~V~iwd~~~~~~~~~~~~--~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.-+|+|+.|+| + .++.+|.|++|++||-.+++.+..+.- .|.+.|.+++|+||++.+++++.|.+++|||+.+.++
T Consensus 190 skFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 190 SKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred ccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence 34799999999 4 455666899999999999998877752 6899999999999999999999999999999876544
Q ss_pred eEE-------------------------------------------ecCCCccEEEEEee--CCEEEEEeCCCcEEEEEC
Q 014934 243 VRT-------------------------------------------MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDI 277 (415)
Q Consensus 243 ~~~-------------------------------------------l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~ 277 (415)
+++ +.+|...|+++..+ +.+|++|+.||.|.-||.
T Consensus 270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~ 349 (603)
T KOG0318|consen 270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS 349 (603)
T ss_pred EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence 333 23788999999998 579999999999999998
Q ss_pred CCCCcc----------E--------------------EE-----------------------------------------
Q 014934 278 RAQEDF----------V--------------------SK----------------------------------------- 286 (415)
Q Consensus 278 ~~~~~~----------~--------------------~~----------------------------------------- 286 (415)
..+... + ..
T Consensus 350 ~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv 429 (603)
T KOG0318|consen 350 GSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIV 429 (603)
T ss_pred CCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEE
Confidence 654310 0 00
Q ss_pred -eccc--------cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCcEEEEEEcCCCCcEEEEEcCC
Q 014934 287 -LSGH--------KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ--PVLKYCEHTAAVKAIAWSPHLHGLLASGGGT 355 (415)
Q Consensus 287 -~~~h--------~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~sp~~~~llasggg~ 355 (415)
+..+ .-...+++++|++..+|+|+.|+.|+||.+.... .......|.++|++++++|++. +||++.
T Consensus 430 ~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~-yla~~D-- 506 (603)
T KOG0318|consen 430 LLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA-YLAAGD-- 506 (603)
T ss_pred EEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCc-EEEEec--
Confidence 0001 1124578899999999999999999999998754 3345568999999999999998 666665
Q ss_pred CCCeEEEEECCCCcEEE-Eee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 356 ADRCIRFWNTTTNTHLS-CMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 356 ~d~~I~iwd~~t~~~~~-~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
..+.+.+||+.+.+... ... |.+.|.+++|+|+...+++ |+-|..|.||++....
T Consensus 507 a~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vAT--GSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 507 ASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVAT--GSLDTNVIIYSVKKPA 563 (603)
T ss_pred cCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEe--ccccceEEEEEccChh
Confidence 79999999999987622 122 7789999999999999988 8999999999997643
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=230.36 Aligned_cols=229 Identities=20% Similarity=0.316 Sum_probs=204.0
Q ss_pred eeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC-CeeeEEe
Q 014934 170 LNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-CKRVRTM 246 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~-~~~~~~l 246 (415)
|....|-. .+++++|+ |..|++|+..+++.+..++ .|.+.|.|++.+|.-.++++++.|-+|++||.+. ..+.+++
T Consensus 58 vRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~Fe-AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf 136 (794)
T KOG0276|consen 58 VRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFE-AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF 136 (794)
T ss_pred hhhheeeeccceEEEecCCceEEEEecccceeeEEee-ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE
Confidence 33444444 67788886 5799999999999998887 8999999999999999999999999999999875 4788999
Q ss_pred cCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC--CCCEEEEEeCCCcEEEEECC
Q 014934 247 EGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY--DNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 247 ~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~lasg~~dg~I~iwd~~ 321 (415)
++|...|.+++|+| +.+++++-|++|++|.+.+.. +..++.+|...|+|+.+-+ |..+|++|+.|..|+|||..
T Consensus 137 eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 137 EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecc
Confidence 99999999999994 799999999999999999887 6889999999999999987 45699999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCC
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
+..+++++++|...|..+.|+|.-. ++++|+ +||++|||+..|-++..++. ....|++++-.+.++.++. |+++
T Consensus 216 tk~CV~TLeGHt~Nvs~v~fhp~lp-iiisgs--EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~v--G~De 290 (794)
T KOG0276|consen 216 TKSCVQTLEGHTNNVSFVFFHPELP-IIISGS--EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAV--GFDE 290 (794)
T ss_pred hHHHHHHhhcccccceEEEecCCCc-EEEEec--CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEE--eccC
Confidence 9999999999999999999999977 888887 99999999999988877776 4578999999999888888 8877
Q ss_pred CcEEE
Q 014934 401 NQIIV 405 (415)
Q Consensus 401 g~I~v 405 (415)
|.|.|
T Consensus 291 g~i~v 295 (794)
T KOG0276|consen 291 GSVTV 295 (794)
T ss_pred CcEEE
Confidence 76543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=230.05 Aligned_cols=237 Identities=25% Similarity=0.427 Sum_probs=209.1
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
..+++++.|++ +..||+| .+|.|.|||..+.+..+.+...|...|-+++|. +..+.+|+.+|.|..+|+...+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 56899999999 8999999 579999999999888887775589999999998 7789999999999999998876554
Q ss_pred E-ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEe--CCCcEEEE
Q 014934 245 T-MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGG--NDNRLFVW 318 (415)
Q Consensus 245 ~-l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~--~dg~I~iw 318 (415)
. +.+|...|..+.|+ +.+|++|+.|+.+.|||..... +...+..|...|.+++|+| ...+||+|+ .|+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 4 88999999999999 6899999999999999997665 6788889999999999999 677899865 69999999
Q ss_pred ECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEe
Q 014934 319 NQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 319 d~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g 397 (415)
|..+++.+..+ .-...|..|.|++..+.++++. |..+..|.||+..+.+.+..+. |...|..++++|||..+++ |
T Consensus 374 n~~~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sth-G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t--~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSV-DTGSQVCSLIWSKKYKELLSTH-GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT--G 449 (484)
T ss_pred EcCCCcEeccc-ccCCceeeEEEcCCCCEEEEec-CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE--e
Confidence 99999998887 4567899999999988676666 6678899999999988877775 7788999999999999999 7
Q ss_pred cCCCcEEEEECCC
Q 014934 398 YSQNQIIVWRYPT 410 (415)
Q Consensus 398 ~~dg~I~vw~~~s 410 (415)
..|.+|++|++-.
T Consensus 450 a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 450 AADETLRFWNLFD 462 (484)
T ss_pred cccCcEEeccccC
Confidence 7899999999754
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=237.47 Aligned_cols=238 Identities=20% Similarity=0.301 Sum_probs=209.8
Q ss_pred CcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
+..+.+..|+.+.+++...+..|.+|+..++..+..--.+|.+.|.++++...+.+|++|+.|.++++||+.++++..++
T Consensus 208 ~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l 287 (537)
T KOG0274|consen 208 DHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL 287 (537)
T ss_pred cchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe
Confidence 44577888886777777778999999999999888733499999999999988899999999999999999999999999
Q ss_pred cCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Q 014934 247 EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV 326 (415)
Q Consensus 247 ~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~ 326 (415)
.+|...|.++...+..+++|+.|.+|++|++.++. .+..+.+|...|.++..+ +.++++|+.|+.|.|||+.+++++
T Consensus 288 ~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl 364 (537)
T KOG0274|consen 288 QGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCL 364 (537)
T ss_pred cCCCceEEEEEccCceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceee
Confidence 99999999999999999999999999999999887 688888899999999997 889999999999999999999999
Q ss_pred EEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEE
Q 014934 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (415)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~v 405 (415)
..+.+|..+|.++.+... ..+.+|+ .|+.|++||+.+. +++..+.++..+. -.....++.|++ +..|++|++
T Consensus 365 ~sl~gH~~~V~sl~~~~~--~~~~Sgs--~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs--~~aD~~Ik~ 437 (537)
T KOG0274|consen 365 KSLSGHTGRVYSLIVDSE--NRLLSGS--LDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVS--SSADGTIKL 437 (537)
T ss_pred eeecCCcceEEEEEecCc--ceEEeee--eccceEeecCCchhhhhhhhcCCcccc-cccccccceeEe--ccccccEEE
Confidence 999999999999988875 4777777 9999999999999 8888887554433 333446778888 788999999
Q ss_pred EECCCCccc
Q 014934 406 WRYPTMSKV 414 (415)
Q Consensus 406 w~~~s~~~l 414 (415)
||..+++.+
T Consensus 438 WD~~~~~~~ 446 (537)
T KOG0274|consen 438 WDAEEGECL 446 (537)
T ss_pred eecccCcee
Confidence 999887653
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=228.14 Aligned_cols=232 Identities=19% Similarity=0.370 Sum_probs=197.6
Q ss_pred ceeEeecCC--CcEEEEE-cCCeEEEEECCC-CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 169 YLNLVDWSS--HNVLAVG-LGNCVYLWNACS-SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~-~d~~V~iwd~~~-~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
.|+++.|.| +.+|+.+ .|+.|+||++.+ +++++.+. +|..+|.+++|+++|..+++++.|+.|++||+++|+++.
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~ 294 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS 294 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh-cchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE
Confidence 488999999 5555554 799999999887 77888776 999999999999999999999999999999999999999
Q ss_pred EecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 245 TMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
.+. -...++|+.|++ +.+++|+.|+.|+.||+|+++ .++.+..|-+.|..+.|-++|+++++.+.|+.++||+.+
T Consensus 295 ~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~ 372 (503)
T KOG0282|consen 295 RFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENR 372 (503)
T ss_pred EEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcC
Confidence 887 456789999983 799999999999999999998 788888999999999999999999999999999999976
Q ss_pred CCcee----------------------------------------------EEeccCCC--cEEEEEEcCCCCcEEEEEc
Q 014934 322 STQPV----------------------------------------------LKYCEHTA--AVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 322 ~~~~~----------------------------------------------~~~~~h~~--~V~~l~~sp~~~~llasgg 353 (415)
...++ ..|++|.. .-..+.|||||. +|++|.
T Consensus 373 ~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~-~l~SGd 451 (503)
T KOG0282|consen 373 IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR-TLCSGD 451 (503)
T ss_pred CCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC-eEEeec
Confidence 42111 11245543 346689999998 778877
Q ss_pred CCCCCeEEEEECCCCcEEEEeeCC-CCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 354 GTADRCIRFWNTTTNTHLSCMDTG-SQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 354 g~~d~~I~iwd~~t~~~~~~~~~~-~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
.||.+.+||.++-+.+..+..+ ..+..+.|+|...--+++ ++-+|.|++|+
T Consensus 452 --sdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat-~~w~G~Ikiwd 503 (503)
T KOG0282|consen 452 --SDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVAT-CGWDGLIKIWD 503 (503)
T ss_pred --CCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEe-cccCceeEecC
Confidence 8999999999999999888855 778899999987655555 56899999996
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=215.32 Aligned_cols=232 Identities=20% Similarity=0.313 Sum_probs=209.5
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.+..+++|+ ..++.++.|+.|+.||+...++++.+. +|-..|.|++.+|.-+.|++|+.|.+++|||+++...+..+
T Consensus 195 ~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh-GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 195 TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH-GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred eeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhc-cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe
Confidence 467888998 456666688999999999999988886 99999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
.+|..+|..+.+. ...+++|+.|++|++||++.+. ....+..|+..|.+++.+|....||+++.|+ |+-|++..+.
T Consensus 274 ~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk-t~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~ 351 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK-TMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGE 351 (460)
T ss_pred cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc-eeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccc
Confidence 9999999999998 5789999999999999999998 5778889999999999999999999999987 8999999999
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee---------CCCCEEEEEECCCCCeEEEE
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---------TGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~---------~~~~V~~l~~s~~~~~l~s~ 395 (415)
.++.+.+|++.|.+++...++ ++++|+ ..|.|.+||.++|...+... ....|.+.+|...|..|++
T Consensus 352 f~~nlsgh~~iintl~~nsD~--v~~~G~--dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit- 426 (460)
T KOG0285|consen 352 FLQNLSGHNAIINTLSVNSDG--VLVSGG--DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLIT- 426 (460)
T ss_pred hhhccccccceeeeeeeccCc--eEEEcC--CceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEe-
Confidence 999999999999999998875 788887 89999999999987766553 3456899999999999999
Q ss_pred EecCCCcEEEEECC
Q 014934 396 HGYSQNQIIVWRYP 409 (415)
Q Consensus 396 ~g~~dg~I~vw~~~ 409 (415)
|..|.+|++|+-.
T Consensus 427 -~eadKtIk~~keD 439 (460)
T KOG0285|consen 427 -GEADKTIKMYKED 439 (460)
T ss_pred -ccCCcceEEEecc
Confidence 7789999999853
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=236.29 Aligned_cols=237 Identities=18% Similarity=0.314 Sum_probs=208.3
Q ss_pred eeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 170 LNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 170 i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
+-.++|+| .-++.++ ..|.|.+||..-+.++..+. +|.++|..|+|+|++.++++|+.|-.|++|+..+.+++-++.
T Consensus 12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd-eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~ 90 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL 90 (1202)
T ss_pred ccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh-ccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc
Confidence 55788999 5566666 57999999999998888886 899999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC---
Q 014934 248 GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS--- 322 (415)
Q Consensus 248 ~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~--- 322 (415)
+|-..|..+.|+. -.++++|.|.+|+||+..++. ++..+.||...|.|..|+|...++++++-|.+|+|||+..
T Consensus 91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred cccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhc
Confidence 9999999999995 589999999999999999987 7999999999999999999999999999999999999742
Q ss_pred -----C---------------------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE---E
Q 014934 323 -----T---------------------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS---C 373 (415)
Q Consensus 323 -----~---------------------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~---~ 373 (415)
+ -..+.+++|...|+.++|+|.-. +++||+ .|+.|++|.+..-+... +
T Consensus 170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~--DDRqVKlWrmnetKaWEvDtc 246 (1202)
T KOG0292|consen 170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGA--DDRQVKLWRMNETKAWEVDTC 246 (1202)
T ss_pred cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecC--CcceeeEEEeccccceeehhh
Confidence 0 01245679999999999999877 899987 99999999987654321 1
Q ss_pred eeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 374 MDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 374 ~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
..|-+.|.++.|+|..+.+++ .++|+.|+|||+...+.
T Consensus 247 rgH~nnVssvlfhp~q~lIlS--nsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 247 RGHYNNVSSVLFHPHQDLILS--NSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred hcccCCcceEEecCccceeEe--cCCCccEEEEecccccc
Confidence 236788999999999999998 67999999999986543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-28 Score=219.33 Aligned_cols=227 Identities=19% Similarity=0.381 Sum_probs=194.0
Q ss_pred ceeEeecCCCcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe---eeE
Q 014934 169 YLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK---RVR 244 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~---~~~ 244 (415)
.|-|+++... +|+.| +|.+|++||.+++++...+. +|.+.|..+.|+ ..++++++.|.++.+||+.... +.+
T Consensus 239 SVLCLqyd~r-viisGSSDsTvrvWDv~tge~l~tli-hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rr 314 (499)
T KOG0281|consen 239 SVLCLQYDER-VIVSGSSDSTVRVWDVNTGEPLNTLI-HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRR 314 (499)
T ss_pred cEEeeeccce-EEEecCCCceEEEEeccCCchhhHHh-hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHH
Confidence 4778888755 55555 78999999999999988874 899999999997 4589999999999999997654 335
Q ss_pred EecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 245 TMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
.+.||.+.|+.+.|+.+++++++.|++|++|++.+.+ ++.++.+|+..|.|+.+ .|+++++|+.|++|++||+..|.
T Consensus 315 VLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~e-fvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~ 391 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCE-FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA 391 (499)
T ss_pred HHhhhhhheeeeccccceEEEecCCceEEEEecccee-eehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccH
Confidence 5679999999999999999999999999999999987 79999999999999987 48999999999999999999999
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE---------E-EeeCCCCEEEEEECCCCCeEEE
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL---------S-CMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~---------~-~~~~~~~V~~l~~s~~~~~l~s 394 (415)
++..+++|..-|.++.|... -+++|+ .||.|++||+.++... . ...+.+.|..++|. ...+++
T Consensus 392 cLRvLeGHEeLvRciRFd~k---rIVSGa--YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvs 464 (499)
T KOG0281|consen 392 CLRVLEGHEELVRCIRFDNK---RIVSGA--YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIIS 464 (499)
T ss_pred HHHHHhchHHhhhheeecCc---eeeecc--ccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEe
Confidence 99999999999999999853 677776 9999999999876432 1 22366789999995 455776
Q ss_pred EEecCCCcEEEEECCCC
Q 014934 395 THGYSQNQIIVWRYPTM 411 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s~ 411 (415)
.+.|.+|.|||+-.+
T Consensus 465 --ssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 465 --SSHDDTILIWDFLNG 479 (499)
T ss_pred --ccCCCeEEEEEcCCC
Confidence 456789999998654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=225.91 Aligned_cols=221 Identities=12% Similarity=0.213 Sum_probs=171.6
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCCCe--------eeEEecCCCccEEEE
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASRCK--------RVRTMEGHRLRVGAL 256 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~~~--------~~~~l~~h~~~V~~l 256 (415)
.+.|++|+.........+. +|.+.|.+++|+|+ +.+||+|+.||.|+|||+.++. .+..+.+|...|.++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~-gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sV 131 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLK-GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII 131 (568)
T ss_pred eeEEEeeecCCCceEEEEc-CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEE
Confidence 4678999887665555554 89999999999996 7899999999999999997542 345678999999999
Q ss_pred EeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC
Q 014934 257 AWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHT 333 (415)
Q Consensus 257 ~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~ 333 (415)
+|++ .+|++++.|++|++||++++.. ...+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+.++.+|.
T Consensus 132 af~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 132 DWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 9995 3568999999999999998873 44444 56789999999999999999999999999999999999999998
Q ss_pred CcEEEE-----EEcCCCCcEEEEEcC-CCCCeEEEEECCC-CcEEEEeeCCC--CEEEEEE-CCCCCeEEEEEecCCCcE
Q 014934 334 AAVKAI-----AWSPHLHGLLASGGG-TADRCIRFWNTTT-NTHLSCMDTGS--QVCNLVW-SKNVNELVSTHGYSQNQI 403 (415)
Q Consensus 334 ~~V~~l-----~~sp~~~~llasggg-~~d~~I~iwd~~t-~~~~~~~~~~~--~V~~l~~-s~~~~~l~s~~g~~dg~I 403 (415)
+.+... .|++++..++++|.. ..++.|+|||+++ ++++..+.... .+....| .+++..+++ |..|+.|
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls--GkGD~tI 287 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI--GKGDGNC 287 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE--EECCCeE
Confidence 765432 345787755555530 1125899999995 66666655333 2222334 445777777 7789999
Q ss_pred EEEECCCC
Q 014934 404 IVWRYPTM 411 (415)
Q Consensus 404 ~vw~~~s~ 411 (415)
++|++...
T Consensus 288 r~~e~~~~ 295 (568)
T PTZ00420 288 RYYQHSLG 295 (568)
T ss_pred EEEEccCC
Confidence 99999654
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-27 Score=219.04 Aligned_cols=235 Identities=24% Similarity=0.346 Sum_probs=204.4
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.|..++||| ..-+|+.+.-.|.||+..+....+.+. ...+.|.+++|-.||++||+|...|.|+|||+.+...++.+
T Consensus 28 ~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~ 106 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL 106 (487)
T ss_pred cceeEecCCCCCCceEEecccEEEEEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH
Confidence 588999999 456777778899999998887766553 55689999999999999999999999999998877788899
Q ss_pred cCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEECCC
Q 014934 247 EGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 247 ~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~lasg~~dg~I~iwd~~~ 322 (415)
.+|+.+|..+.|+ +..|++|+.|+.+++||+.+.. ....+.+|+..|.|.+|+|. +.+++||+.||.|++||++.
T Consensus 107 ~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 107 YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 9999999999998 4689999999999999999887 46688999999999999995 45789999999999999998
Q ss_pred C-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-EEEEee-CCCCEEEEEECCCCCeEEEEEecC
Q 014934 323 T-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCMD-TGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 323 ~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
. ..+.++ .|..+|-.+.+-|.|. +++++| ...|++||+.+|. .+.... |...|+|+.+..++..|++ |+-
T Consensus 186 ~~~~v~el-nhg~pVe~vl~lpsgs-~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS--~sL 258 (487)
T KOG0310|consen 186 LTSRVVEL-NHGCPVESVLALPSGS-LIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLS--GSL 258 (487)
T ss_pred CCceeEEe-cCCCceeeEEEcCCCC-EEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEee--ccc
Confidence 7 667777 7999999999999987 888876 5889999999654 444444 7888999999999999999 889
Q ss_pred CCcEEEEECCCCc
Q 014934 400 QNQIIVWRYPTMS 412 (415)
Q Consensus 400 dg~I~vw~~~s~~ 412 (415)
|+.+++|++.+.+
T Consensus 259 D~~VKVfd~t~~K 271 (487)
T KOG0310|consen 259 DRHVKVFDTTNYK 271 (487)
T ss_pred ccceEEEEccceE
Confidence 9999999977654
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=215.41 Aligned_cols=231 Identities=22% Similarity=0.269 Sum_probs=197.4
Q ss_pred eeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 170 LNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
+.+++|-. +.+||+|. .|.|+|+|..+..+.+.+. .|..+|..+.|+|. +..|++|+.|+.+++||+.+......+
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l 149 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL 149 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe
Confidence 55778877 88888884 5899999976655556555 89999999999995 567888899999999999998877789
Q ss_pred cCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 247 EGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 247 ~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
.+|...|.|.+|+ ++++++||.||.|++||++.....+.. ..|..+|..+.+-|.|.++|+++. +.|+|||+.+|
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e-lnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G 227 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE-LNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTG 227 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE-ecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCC
Confidence 9999999999998 469999999999999999988634444 458999999999999999999876 56999999855
Q ss_pred -ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCc
Q 014934 324 -QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 324 -~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
+.+..+..|...|+|+++..++..| .++| .|+.+++||+.+-+.+..+...++|.+++.+|+++.++. |.++|.
T Consensus 228 ~qll~~~~~H~KtVTcL~l~s~~~rL-lS~s--LD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~vi--GmsnGl 302 (487)
T KOG0310|consen 228 GQLLTSMFNHNKTVTCLRLASDSTRL-LSGS--LDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVI--GMSNGL 302 (487)
T ss_pred ceehhhhhcccceEEEEEeecCCceE-eecc--cccceEEEEccceEEEEeeecccceeeEEecCCCceEEE--ecccce
Confidence 5555665699999999999988744 5555 899999999999999999999999999999999999999 888988
Q ss_pred EEEEEC
Q 014934 403 IIVWRY 408 (415)
Q Consensus 403 I~vw~~ 408 (415)
+.+=+.
T Consensus 303 v~~rr~ 308 (487)
T KOG0310|consen 303 VSIRRR 308 (487)
T ss_pred eeeehh
Confidence 776543
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=213.82 Aligned_cols=240 Identities=20% Similarity=0.382 Sum_probs=194.5
Q ss_pred CcceeEeecCC--CcEEEEEc-CCeEEEEECCCCCeEEe---------EecCCCCCeEEEEEcCCC-CeEEEEECCCcEE
Q 014934 167 DFYLNLVDWSS--HNVLAVGL-GNCVYLWNACSSKVTKL---------CDLGIDDSVCSVGWANRN-THLAVGTSHGKVQ 233 (415)
Q Consensus 167 ~~~i~~l~ws~--~~~la~~~-d~~V~iwd~~~~~~~~~---------~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~ 233 (415)
+-.||.+.+-| .++||+.. ++.|+|||.....-... ...+|.+.-++++|++.. -+|++|+.|+.|.
T Consensus 124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~ 203 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC 203 (422)
T ss_pred CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEE
Confidence 34566677777 45777764 57899999865321110 112787778899999854 4789999999999
Q ss_pred EEECCCCe-------eeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCC-CCccEEEeccccCCeEEEEEeC-
Q 014934 234 IWDASRCK-------RVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRA-QEDFVSKLSGHKSEVCGLKWSY- 301 (415)
Q Consensus 234 iwd~~~~~-------~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~sp- 301 (415)
+||+.... ....+.+|...|..++|+ ..+|++++.|+.+.|||+|+ ..++.+...+|.++|.|++|+|
T Consensus 204 lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~ 283 (422)
T KOG0264|consen 204 LWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPF 283 (422)
T ss_pred EEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCC
Confidence 99996432 345678999999999998 47999999999999999996 3345677889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE---------
Q 014934 302 DNRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL--------- 371 (415)
Q Consensus 302 dg~~lasg~~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~--------- 371 (415)
++..||+|+.|++|.+||+++- ++++++.+|...|..|.|+|+...+||++| .|+.+.+||+..-...
T Consensus 284 ~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg--~D~rl~vWDls~ig~eq~~eda~dg 361 (422)
T KOG0264|consen 284 NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG--TDRRLNVWDLSRIGEEQSPEDAEDG 361 (422)
T ss_pred CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc--cCCcEEEEeccccccccChhhhccC
Confidence 6678899999999999999975 678999999999999999999999999998 9999999999742111
Q ss_pred -----EEe-eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 372 -----SCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 372 -----~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
... .|...|..+.|+|+..+++++ ...||.+.||++.
T Consensus 362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~S-vaeDN~LqIW~~s 404 (422)
T KOG0264|consen 362 PPELLFIHGGHTAKVSDFSWNPNEPWTIAS-VAEDNILQIWQMA 404 (422)
T ss_pred CcceeEEecCcccccccccCCCCCCeEEEE-ecCCceEEEeecc
Confidence 111 255779999999999998887 5689999999986
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-26 Score=225.68 Aligned_cols=238 Identities=20% Similarity=0.303 Sum_probs=206.7
Q ss_pred CCcceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 166 DDFYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 166 ~~~~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
.|-.|..++|+| +.++++|. |-.|++|+..+.++...+. +|-+.|..+.|++.-.++++++.|-+|+||+.++.+++
T Consensus 50 HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~-GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~i 128 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL-GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCI 128 (1202)
T ss_pred cCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc-cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceE
Confidence 355799999999 66777765 4689999999988876664 99999999999999999999999999999999999999
Q ss_pred EEecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCC----------------------------ccEEEeccccCC
Q 014934 244 RTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE----------------------------DFVSKLSGHKSE 293 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~----------------------------~~~~~~~~h~~~ 293 (415)
..+.||...|.|..|+| +.++++|-|.+|++||+..-. -..+.+.||...
T Consensus 129 avltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG 208 (1202)
T KOG0292|consen 129 AVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG 208 (1202)
T ss_pred EEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc
Confidence 99999999999999996 799999999999999985311 123457899999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEECCCCce--eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE
Q 014934 294 VCGLKWSYDNRELASGGNDNRLFVWNQHSTQP--VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371 (415)
Q Consensus 294 V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~ 371 (415)
|+-++|+|.-.+|++|+.|..|++|.+...+. +-+..+|...|.++-|+|.+. ++.|.| +|++|++||+...+.+
T Consensus 209 VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSns--EDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 209 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNS--EDKSIRVWDMTKRTSV 285 (1202)
T ss_pred cceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecC--CCccEEEEecccccce
Confidence 99999999999999999999999999876543 446679999999999999987 777776 8999999999999999
Q ss_pred EEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 372 SCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 372 ~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+++. .....+.++-+|..+.++++ .|+-+.||+++.
T Consensus 286 ~tfrrendRFW~laahP~lNLfAAg---HDsGm~VFkleR 322 (1202)
T KOG0292|consen 286 QTFRRENDRFWILAAHPELNLFAAG---HDSGMIVFKLER 322 (1202)
T ss_pred eeeeccCCeEEEEEecCCcceeeee---cCCceEEEEEcc
Confidence 9986 45678999999999999884 366778888763
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=195.02 Aligned_cols=238 Identities=18% Similarity=0.227 Sum_probs=197.7
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC--CCcEEEEECCCCeee
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS--HGKVQIWDASRCKRV 243 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~--dg~V~iwd~~~~~~~ 243 (415)
-.+++++|++ +..|+++ .|..+.|||..+++..+.+. .+.-.|..++|......++.++. |.+|+..++.+.+.+
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 3589999999 6666665 57799999999999988886 44557888899887777776666 789999999999999
Q ss_pred EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
+.+.||...|..|+.+ ++.+++++.|++|++||+|..+ +...+.....+| .+|+|+|-++|++...+.|++||++
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~R 170 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLR 170 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-CceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEec
Confidence 9999999999999999 4899999999999999999776 344444333334 6899999999999988899999998
Q ss_pred CC--ceeEEec---cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC----CCEEEEEECCCCCeE
Q 014934 322 ST--QPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG----SQVCNLVWSKNVNEL 392 (415)
Q Consensus 322 ~~--~~~~~~~---~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~----~~V~~l~~s~~~~~l 392 (415)
.- .|..++. +.....+.+.|+|+|+.+|++. ..+.+++.|.-+|..+..+... .--....|+||++++
T Consensus 171 s~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 171 SFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred ccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEE
Confidence 64 4555543 3466789999999999999877 5899999999999988887632 123578999999999
Q ss_pred EEEEecCCCcEEEEECCCCccc
Q 014934 393 VSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 393 ~s~~g~~dg~I~vw~~~s~~~l 414 (415)
++ |+.||.|.+|++.++.++
T Consensus 248 l~--gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 248 LS--GSDDGTIHVWNLETGKKV 267 (311)
T ss_pred EE--ecCCCcEEEEEcCCCcEe
Confidence 99 889999999999998875
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-25 Score=208.31 Aligned_cols=238 Identities=20% Similarity=0.398 Sum_probs=196.3
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECC----CcEEEEECCC
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSH----GKVQIWDASR 239 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~d----g~V~iwd~~~ 239 (415)
...++...++| +.++|.| ..|+|+||+....+.+...++ .-.++|..++|+.++++|++.+.. |.+.+|| +
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--S 136 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--S 136 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--C
Confidence 34578889999 7778877 358999999877554333333 336899999999999988776542 4466676 5
Q ss_pred CeeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 240 CKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 240 ~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
+..+..+.+|...|.+++|. |-.+++|+.|++|.+|+=.-.+ ....+..|..-|.++.|+|||.+||+.+.||+|.
T Consensus 137 G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFK-Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 137 GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFK-FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCee-eeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 66788999999999999997 5789999999999999854333 5566778999999999999999999999999999
Q ss_pred EEECCCCceeEEec---cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee------------------
Q 014934 317 VWNQHSTQPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD------------------ 375 (415)
Q Consensus 317 iwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~------------------ 375 (415)
+||-.+++.+..+. +|++.|.+|+|+||+..++.++ .|.+++|||+.+.+++.++.
T Consensus 216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S---aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~ 292 (603)
T KOG0318|consen 216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS---ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH 292 (603)
T ss_pred EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec---CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence 99999999999998 8999999999999998665555 69999999998776544321
Q ss_pred --------------------------CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 376 --------------------------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 376 --------------------------~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
|...|+++..++++.+|++ |+.||.|.-|+..++.
T Consensus 293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S--gsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS--GSYDGHINSWDSGSGT 353 (603)
T ss_pred EEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe--eccCceEEEEecCCcc
Confidence 3345889999999999999 8899999999998775
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=222.77 Aligned_cols=247 Identities=20% Similarity=0.316 Sum_probs=208.6
Q ss_pred CCCceeccCCCCCCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC
Q 014934 153 RSPYKILDAPALQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG 230 (415)
Q Consensus 153 ~~p~~~ld~~~l~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg 230 (415)
......+-.+...+.-.|.++++.. +++|..| .|.++++||..+|++...+. +|.+.|.++... +.++++|+.|.
T Consensus 235 ~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~ 311 (537)
T KOG0274|consen 235 LNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ-GHTSSVRCLTID--PFLLVSGSRDN 311 (537)
T ss_pred cccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec-CCCceEEEEEcc--CceEeeccCCc
Confidence 3333333333333444577888876 6666666 59999999999999999997 899999998764 55788899999
Q ss_pred cEEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe
Q 014934 231 KVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG 310 (415)
Q Consensus 231 ~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~ 310 (415)
+|++|++.++.++..+.+|.+.|.++..++.++++|+.|++|++||+.+.+ ++..+.+|...|.++.+.+. ..+++|+
T Consensus 312 tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~-~~~~Sgs 389 (537)
T KOG0274|consen 312 TVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGRVYSLIVDSE-NRLLSGS 389 (537)
T ss_pred eEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhce-eeeeecCCcceEEEEEecCc-ceEEeee
Confidence 999999999999999999999999999999999999999999999999776 89999999999999988755 8999999
Q ss_pred CCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC--CCEEEEEECC
Q 014934 311 NDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--SQVCNLVWSK 387 (415)
Q Consensus 311 ~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~--~~V~~l~~s~ 387 (415)
.|+.|++||+++. +++..+.+|.+-|..+.+.. + +|++++ .|+.|++||..+++++..+.+. ..|..+++.
T Consensus 390 ~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~--~-~Lvs~~--aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~- 463 (537)
T KOG0274|consen 390 LDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRD--N-FLVSSS--ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG- 463 (537)
T ss_pred eccceEeecCCchhhhhhhhcCCccccccccccc--c-eeEecc--ccccEEEeecccCceeeeeccCCcccEEEeecC-
Confidence 9999999999999 99999999999997776653 3 777776 8999999999999999999864 667777776
Q ss_pred CCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 388 NVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 388 ~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
...+++ ++.|+.+.+||+++++.
T Consensus 464 -~~~il~--s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 464 -KEEILC--SSDDGSVKLWDLRSGTL 486 (537)
T ss_pred -cceEEE--EecCCeeEEEecccCch
Confidence 345555 56899999999998864
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=205.63 Aligned_cols=243 Identities=17% Similarity=0.289 Sum_probs=211.6
Q ss_pred CCCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEec-------CCCCCeEEEEEcCCCCeEEEEECCCcEEE
Q 014934 164 LQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-------GIDDSVCSVGWANRNTHLAVGTSHGKVQI 234 (415)
Q Consensus 164 l~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~-------~~~~~V~~v~~sp~g~~la~g~~dg~V~i 234 (415)
+....++.|..||| +++|+.| .||.|.+||..+|++.+-+.. -+.+.|.|+.|+.|...||+|+.||.|++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 34455788999999 8888888 489999999999987654432 34689999999999999999999999999
Q ss_pred EECCCCeeeEEec-CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 235 WDASRCKRVRTME-GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 235 wd~~~~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
|.+.+|.+++.+. .|...|+|+.|+ +..+++++.|.++++.-+.+++ ++..+.+|...|+...|.+||..+++++.
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcCccccccceEEcCCCCeEEEecC
Confidence 9999999999997 899999999998 6789999999999999999987 68899999999999999999999999999
Q ss_pred CCcEEEEECCCCceeEEecc--CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee----CCCCEEEEEE
Q 014934 312 DNRLFVWNQHSTQPVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD----TGSQVCNLVW 385 (415)
Q Consensus 312 dg~I~iwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~----~~~~V~~l~~ 385 (415)
||+|+||+.++.+++.+|+. ...+|..+..-|.+..-++.+. ..++|.|.++. |+.+..+. .++...+.+.
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN--RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc--CCCeEEEEecc-ceEEeeeccCCccCCceEEEEe
Confidence 99999999999999988874 5567889988888776677666 78999999986 77777775 3455667889
Q ss_pred CCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 386 SKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 386 s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+|.|.++.+ -++|+.++.+.+.+++
T Consensus 446 SpkGewiYc--igED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 446 SPKGEWIYC--IGEDGVLYCFSVLSGK 470 (508)
T ss_pred cCCCcEEEE--EccCcEEEEEEeecCc
Confidence 999999988 5699999999998764
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=189.90 Aligned_cols=235 Identities=15% Similarity=0.268 Sum_probs=201.7
Q ss_pred ceeEeecCC--CcEEEE-EcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSS--HNVLAV-GLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~-~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
.+.-+.|+| .+++++ +.|.+|++||...+++..... ....-.-+.|+|+|.++++|..|..|.+.|.++.+.+..
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh
Confidence 355677887 444544 468899999999999887775 344556789999999999999999999999998877766
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
.+ ..-.+..++|+ +++++.....|.|.|.....-+ ++..+++|.....|++|+|+|++||+|+.|-.+.+||+..-
T Consensus 144 ~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk-pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL 221 (313)
T KOG1407|consen 144 EQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK-PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL 221 (313)
T ss_pred hc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccc-cccccccCCcceEEEEECCCCceEeeccccceeeccChhHh
Confidence 55 45568888887 5777777778999999887665 68899999999999999999999999999999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCC---
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ--- 400 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~d--- 400 (415)
-++..+..+.-+|..|.|+-+|+ +||+++ +|..|-|-++++|..+..+.+.++...++|+|....|+.+....|
T Consensus 222 iC~R~isRldwpVRTlSFS~dg~-~lASaS--EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~ 298 (313)
T KOG1407|consen 222 ICERCISRLDWPVRTLSFSHDGR-MLASAS--EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDS 298 (313)
T ss_pred hhheeeccccCceEEEEeccCcc-eeeccC--ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCcc
Confidence 89999999999999999999997 889887 999999999999999999999999999999999999988644333
Q ss_pred ----CcEEEEECCC
Q 014934 401 ----NQIIVWRYPT 410 (415)
Q Consensus 401 ----g~I~vw~~~s 410 (415)
|.+++|-+++
T Consensus 299 ~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 299 NREAGTVKIFGLSN 312 (313)
T ss_pred ccccceeEEecCCC
Confidence 4788887664
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=202.24 Aligned_cols=234 Identities=23% Similarity=0.416 Sum_probs=196.1
Q ss_pred eeEeecCC-----CcEEEEEcCCeEEEEECCCCCeE----EeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC--
Q 014934 170 LNLVDWSS-----HNVLAVGLGNCVYLWNACSSKVT----KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS-- 238 (415)
Q Consensus 170 i~~l~ws~-----~~~la~~~d~~V~iwd~~~~~~~----~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~-- 238 (415)
|..++|-. ..++.++.|.++++|..+.++.. ..+. +|...|-+|...++|..+++|+.|.+|.||+..
T Consensus 147 ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~-GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~ 225 (423)
T KOG0313|consen 147 IKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCR-GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD 225 (423)
T ss_pred eeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhc-ccccceeEEEecCCCCeEEeecccceeeecccCCC
Confidence 55566643 23666678999999988776542 2232 899999999999999999999999999999931
Q ss_pred -----------------------CCeeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCe
Q 014934 239 -----------------------RCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV 294 (415)
Q Consensus 239 -----------------------~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 294 (415)
+..++.++.+|.++|.++.|. ...+++++.|.+|+.||+.++. ....+.+ ...+
T Consensus 226 ~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~-~~~~~~~-~ksl 303 (423)
T KOG0313|consen 226 EEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGG-LKSTLTT-NKSL 303 (423)
T ss_pred ccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeeccc-ceeeeec-Ccce
Confidence 123566788999999999999 5899999999999999999987 3444443 4679
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCC---ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-E
Q 014934 295 CGLKWSYDNRELASGGNDNRLFVWNQHST---QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-H 370 (415)
Q Consensus 295 ~~l~~spdg~~lasg~~dg~I~iwd~~~~---~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-~ 370 (415)
.++..+|..++||+|+.|..|++||.+++ -..++|.+|++.|.++.|+|...++|++++ .|+++++||+++.+ +
T Consensus 304 ~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S--~D~t~klWDvRS~k~p 381 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS--YDNTVKLWDVRSTKAP 381 (423)
T ss_pred eEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe--cCCeEEEEEeccCCCc
Confidence 99999999999999999999999999876 346788899999999999999999999998 99999999999877 7
Q ss_pred EEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 371 LSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 371 ~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+..+. |...|.++.|...+ .+++ |+.|++|+|+.....
T Consensus 382 lydI~~h~DKvl~vdW~~~~-~IvS--GGaD~~l~i~~~~~~ 420 (423)
T KOG0313|consen 382 LYDIAGHNDKVLSVDWNEGG-LIVS--GGADNKLRIFKGSPI 420 (423)
T ss_pred ceeeccCCceEEEEeccCCc-eEEe--ccCcceEEEeccccc
Confidence 88776 77889999998653 5677 889999999987643
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-25 Score=195.19 Aligned_cols=230 Identities=23% Similarity=0.356 Sum_probs=195.1
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
.|.-+.|.. ..++.+|.|.+|+.||+++|+..+... +|.+.|.++.-+.-| .++.+|+.||+++|||+++...+++
T Consensus 92 AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 92 AVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred eeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc
Confidence 467788887 446666789999999999999988887 889999999855555 4677888999999999998888887
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+. ..-.++++.|+ +..+.+|+-|+.|++||++... ....+.||...|++|..+|+|.++.+-+-|+++++||++-.
T Consensus 171 ~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d-~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 171 FE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND-GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred cc-cceeEEEEEecccccceeeccccCceeeeccccCc-ceEEeecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence 76 45679999998 6899999999999999999887 68999999999999999999999999999999999998753
Q ss_pred ----ceeEEeccCCC----cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEE
Q 014934 324 ----QPVLKYCEHTA----AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 324 ----~~~~~~~~h~~----~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s 394 (415)
+++..+.+|.. ....++|+|++. .+.+|+ .|+.+++||......+..+. |...|.+++|+|....|.+
T Consensus 249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags--~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils 325 (338)
T KOG0265|consen 249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGS--ADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILS 325 (338)
T ss_pred CCCCceEEEeecchhhhhhhcceeeccCCCC-cccccc--ccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEE
Confidence 45777777653 346789999987 444444 89999999999988888776 6678999999999999999
Q ss_pred EEecCCCcEEEE
Q 014934 395 THGYSQNQIIVW 406 (415)
Q Consensus 395 ~~g~~dg~I~vw 406 (415)
+++|.+|.+=
T Consensus 326 --~~sdk~i~lg 335 (338)
T KOG0265|consen 326 --CSSDKTIYLG 335 (338)
T ss_pred --eccCceeEee
Confidence 6789888763
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-26 Score=201.39 Aligned_cols=204 Identities=21% Similarity=0.347 Sum_probs=177.2
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC------------------CeeeEEecCCCccEEEEEeeC--CEEEE
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR------------------CKRVRTMEGHRLRVGALAWSS--SLLSS 265 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~------------------~~~~~~l~~h~~~V~~l~~~~--~~l~s 265 (415)
.|...+.+.+|++||.++|+|+.|..|+|.|++. .-.++++..|...|+++.|+| .+|++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 7889999999999999999999999999999851 135778889999999999996 79999
Q ss_pred EeCCCcEEEEECCCCCcc-EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEe---ccCCCcEEEEEE
Q 014934 266 GSRDKSILQRDIRAQEDF-VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY---CEHTAAVKAIAW 341 (415)
Q Consensus 266 gs~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~---~~h~~~V~~l~~ 341 (415)
|++|++|+++|+...... ..+......+|.++.|+|.|.+|+.|..-..+++||+++.++...- ..|+++|+++.+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 999999999999765411 1112223468999999999999999999999999999998876554 369999999999
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee---CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~---~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
++.++ ++++++ .||.|++||--+++|+.++. .++.||+..|..+|+++++ .+.|..+++|.+.++..+
T Consensus 270 s~t~~-lYvTaS--kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs--SG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 270 SSTGS-LYVTAS--KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS--SGKDSTVKLWEISTGRML 340 (430)
T ss_pred cCCcc-EEEEec--cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee--cCCcceeeeeeecCCceE
Confidence 99997 999988 99999999999999998885 4688999999999999999 668999999999987654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=216.13 Aligned_cols=201 Identities=22% Similarity=0.417 Sum_probs=174.7
Q ss_pred CCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCC-CeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC
Q 014934 206 GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASR-CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE 281 (415)
Q Consensus 206 ~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~-~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~ 281 (415)
+|+..|+++.|.| .+.+|++|+.|+.|+||++.. +++++++.+|..+|.+++|+ +..|++++.|+.|++||++++.
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~ 291 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ 291 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce
Confidence 8999999999999 899999999999999999976 88999999999999999999 7899999999999999999998
Q ss_pred ccEEEeccccCCeEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeE
Q 014934 282 DFVSKLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (415)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~spdg-~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I 360 (415)
+...+. -...+.++.|+||+ +.|++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+.++.+. .|+.+
T Consensus 292 -~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS---Ddks~ 366 (503)
T KOG0282|consen 292 -VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS---DDKSV 366 (503)
T ss_pred -EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec---cCccE
Confidence 444444 34578999999998 8899999999999999999999999999999999999999999666655 79999
Q ss_pred EEEECCCCcEEEE--------------------------------ee-----------------CCCCEEEEEECCCCCe
Q 014934 361 RFWNTTTNTHLSC--------------------------------MD-----------------TGSQVCNLVWSKNVNE 391 (415)
Q Consensus 361 ~iwd~~t~~~~~~--------------------------------~~-----------------~~~~V~~l~~s~~~~~ 391 (415)
+||+...+-.++. +. ..+.-+.+.|||||.+
T Consensus 367 riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~ 446 (503)
T KOG0282|consen 367 RIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT 446 (503)
T ss_pred EEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCe
Confidence 9999875432111 00 1134578999999999
Q ss_pred EEEEEecCCCcEEEEECCCCcc
Q 014934 392 LVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
|++ |..||.+.+||+.+-+.
T Consensus 447 l~S--GdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 447 LCS--GDSDGKVNFWDWKTTKL 466 (503)
T ss_pred EEe--ecCCccEEEeechhhhh
Confidence 999 99999999999987543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-25 Score=218.89 Aligned_cols=234 Identities=16% Similarity=0.303 Sum_probs=191.1
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCC----------------------------e-----------------
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK----------------------------V----------------- 199 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~----------------------------~----------------- 199 (415)
+-.|.++.||+ +.+||+| .|+.|+||.+...+ .
T Consensus 267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 33599999999 9999998 47899999875500 0
Q ss_pred E-------------EeEe-cCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC---CE
Q 014934 200 T-------------KLCD-LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---SL 262 (415)
Q Consensus 200 ~-------------~~~~-~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~---~~ 262 (415)
. .++. .+|.+.|..+.|+.+ ++|++++.|.+|+||++...+++..|. |...|+|++|+| ++
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDry 424 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRY 424 (712)
T ss_pred cccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCc
Confidence 0 0001 178899999999965 578899999999999999999999998 999999999995 89
Q ss_pred EEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec---------cCC
Q 014934 263 LSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC---------EHT 333 (415)
Q Consensus 263 l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~---------~h~ 333 (415)
|++|+-||.|+||++...+ +..+..-..-|++++|.|||+..+.|+.+|.+++|+....+....+. .|.
T Consensus 425 FiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK 502 (712)
T ss_pred EeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence 9999999999999998765 34444445789999999999999999999999999998876655442 133
Q ss_pred CcEEEEEEcCCCCc-EEEEEcCCCCCeEEEEECCCCcEEEEee----CCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 334 AAVKAIAWSPHLHG-LLASGGGTADRCIRFWNTTTNTHLSCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 334 ~~V~~l~~sp~~~~-llasggg~~d~~I~iwd~~t~~~~~~~~----~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
.|+++.|.|.... +|++. .|..|||+|.++.+++..++ ..++ ....|+.||++|++ +++|..|+||++
T Consensus 503 -rITG~Q~~p~~~~~vLVTS---nDSrIRI~d~~~~~lv~KfKG~~n~~SQ-~~Asfs~Dgk~IVs--~seDs~VYiW~~ 575 (712)
T KOG0283|consen 503 -RITGLQFFPGDPDEVLVTS---NDSRIRIYDGRDKDLVHKFKGFRNTSSQ-ISASFSSDGKHIVS--ASEDSWVYIWKN 575 (712)
T ss_pred -eeeeeEecCCCCCeEEEec---CCCceEEEeccchhhhhhhcccccCCcc-eeeeEccCCCEEEE--eecCceEEEEeC
Confidence 7999999987654 77766 69999999998888877775 2344 45789999999999 679999999998
Q ss_pred CCC
Q 014934 409 PTM 411 (415)
Q Consensus 409 ~s~ 411 (415)
++.
T Consensus 576 ~~~ 578 (712)
T KOG0283|consen 576 DSF 578 (712)
T ss_pred CCC
Confidence 653
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-24 Score=211.59 Aligned_cols=218 Identities=18% Similarity=0.232 Sum_probs=173.0
Q ss_pred cceeEeecCC--CcEEEEE-cCCeEEEEECCCCC-------eEEeEecCCCCCeEEEEEcCCC-CeEEEEECCCcEEEEE
Q 014934 168 FYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSK-------VTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWD 236 (415)
Q Consensus 168 ~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~-------~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd 236 (415)
-.|++++|+| +++|+++ .|+.|++||+.++. ....+. +|...|.+++|+|++ ++|++|+.||.|+|||
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 4699999998 4566666 68999999997653 223333 789999999999985 6999999999999999
Q ss_pred CCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCC-eEEEEEeCCCCEEEEEe---
Q 014934 237 ASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSE-VCGLKWSYDNRELASGG--- 310 (415)
Q Consensus 237 ~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~-V~~l~~spdg~~lasg~--- 310 (415)
+.+++.+..+.+|...|.+++|+ +.+|++|+.|+.|++||++++. .+..+.+|... +..+.|.+++..|++++
T Consensus 155 l~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~ 233 (493)
T PTZ00421 155 VERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKSQRCLWAKRKDLIITLGCSK 233 (493)
T ss_pred CCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcceEEEEcCCCCeEEEEecCC
Confidence 99999999999999999999998 5799999999999999999887 56777888764 45678999888887754
Q ss_pred -CCCcEEEEECCCCc-eeEEeccC-CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--CCCCEEEEEE
Q 014934 311 -NDNRLFVWNQHSTQ-PVLKYCEH-TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVW 385 (415)
Q Consensus 311 -~dg~I~iwd~~~~~-~~~~~~~h-~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--~~~~V~~l~~ 385 (415)
.|+.|++||+++.. ++.....+ ...+....|++++..+++.+. .|+.|++||+.+++.+.... ...++.+++|
T Consensus 234 s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk--gDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~ 311 (493)
T PTZ00421 234 SQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK--GEGNIRCFELMNERLTFCSSYSSVEPHKGLCM 311 (493)
T ss_pred CCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEe--CCCeEEEEEeeCCceEEEeeccCCCCCcceEe
Confidence 47899999998754 44444333 345666788999885555443 49999999999998876654 3446778888
Q ss_pred CCCC
Q 014934 386 SKNV 389 (415)
Q Consensus 386 s~~~ 389 (415)
.|.-
T Consensus 312 ~pk~ 315 (493)
T PTZ00421 312 MPKW 315 (493)
T ss_pred cccc
Confidence 8753
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=201.71 Aligned_cols=233 Identities=18% Similarity=0.264 Sum_probs=199.6
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.+..++..+ ..++..|.|..+.++|..+++++.++. +|...|+.+.++++...+++++.|-.|+||...........
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 366777777 455555577899999999999988887 99999999999999999999999999999999888888888
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS-GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
..|.++|+.+..+ +++|++++.||++.+.|++++........ ...-.+++.+|+|||.+|++|..|+.|+|||+.++
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 8999999999988 68999999999999999999874332222 23356899999999999999999999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEecCCC
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQN 401 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg 401 (415)
..+..|.+|.++|++|+|+.+|- .|+++. .|+.|++||++..+.+.++. ....|..+.|.+.|.+|+. ++.+
T Consensus 380 ~~~a~Fpght~~vk~i~FsENGY-~Lat~a--dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~--~g~~- 453 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISFSENGY-WLATAA--DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI--AGSD- 453 (506)
T ss_pred cccccCCCCCCceeEEEeccCce-EEEEEe--cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEe--ecce-
Confidence 99999999999999999999985 556655 79999999999988877775 3446999999999999999 5454
Q ss_pred cEEEEECC
Q 014934 402 QIIVWRYP 409 (415)
Q Consensus 402 ~I~vw~~~ 409 (415)
|+||.+.
T Consensus 454 -l~Vy~~~ 460 (506)
T KOG0289|consen 454 -LQVYICK 460 (506)
T ss_pred -eEEEEEe
Confidence 5555554
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=203.40 Aligned_cols=239 Identities=19% Similarity=0.354 Sum_probs=197.5
Q ss_pred CcceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
...|..+.||| ..+|++|.+..+.+||+.+|.....+..++...+.+++|.|||..+++|+.|+.+..||+.. ..+.
T Consensus 269 ~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~ 347 (519)
T KOG0293|consen 269 SQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILG 347 (519)
T ss_pred cCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhh
Confidence 34588899999 45667778889999999999998888766678999999999999999999999999999864 3344
Q ss_pred EecCC-CccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 245 TMEGH-RLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 245 ~l~~h-~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
..++- ...|.+++.. +.++++.+.|..|++++.++... .. +....++|++++.|.|++++++--.+..|++||++
T Consensus 348 ~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d-r~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 348 NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD-RG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh-hc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 44432 2568888876 78999999999999999987653 22 33345789999999999999999999999999999
Q ss_pred CCceeEEeccCCCc--EEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEec
Q 014934 322 STQPVLKYCEHTAA--VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 322 ~~~~~~~~~~h~~~--V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
..+.+.++.+|+.. +..-+|--....++++|+ +|+.|+||+..+|+++..+. |...|.+++|+|...+++++ ++
T Consensus 426 e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS--ED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~AS-as 502 (519)
T KOG0293|consen 426 ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS--EDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFAS-AS 502 (519)
T ss_pred hhhHHHHhhcccccceEEEeccCCCCcceEEecC--CCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhc-cC
Confidence 99999999999865 334456555556888887 99999999999999999987 55679999999998877665 67
Q ss_pred CCCcEEEEECCCC
Q 014934 399 SQNQIIVWRYPTM 411 (415)
Q Consensus 399 ~dg~I~vw~~~s~ 411 (415)
+||+|+||.....
T Consensus 503 DDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 503 DDGTIRIWGPSDN 515 (519)
T ss_pred CCCeEEEecCCcc
Confidence 9999999987654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=191.91 Aligned_cols=236 Identities=22% Similarity=0.397 Sum_probs=185.8
Q ss_pred eccCCCCCCCcceeEeecCC--CcEEEEE-cCCeEEEEECCC-CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEE
Q 014934 158 ILDAPALQDDFYLNLVDWSS--HNVLAVG-LGNCVYLWNACS-SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQ 233 (415)
Q Consensus 158 ~ld~~~l~~~~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~-~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~ 233 (415)
.++.+.-.+| .|.+|+||| .+++++| -|++|++|+++. |.........|.++|.+++|+.||..+++|+.|+.++
T Consensus 19 d~ev~~pP~D-sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k 97 (347)
T KOG0647|consen 19 DYEVPNPPED-SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK 97 (347)
T ss_pred ceecCCCccc-chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceE
Confidence 3333333334 588999999 6677555 699999999987 4444433347889999999999999999999999999
Q ss_pred EEECCCCeeeEEecCCCccEEEEEeeC----CEEEEEeCCCcEEEEECCCCCccEEE-----------------------
Q 014934 234 IWDASRCKRVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQEDFVSK----------------------- 286 (415)
Q Consensus 234 iwd~~~~~~~~~l~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~----------------------- 286 (415)
+||+.++ .+..+..|.++|.++.|-+ ..|++||.|++|+.||.|.... +..
T Consensus 98 ~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-v~t~~LPeRvYa~Dv~~pm~vVata~ 175 (347)
T KOG0647|consen 98 LWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-VATLQLPERVYAADVLYPMAVVATAE 175 (347)
T ss_pred EEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe-eeeeeccceeeehhccCceeEEEecC
Confidence 9999998 4567778999999999973 4789999999999999997652 111
Q ss_pred -------e-------ccc----cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC--ceeEEeccCC---------CcEE
Q 014934 287 -------L-------SGH----KSEVCGLKWSYDNRELASGGNDNRLFVWNQHST--QPVLKYCEHT---------AAVK 337 (415)
Q Consensus 287 -------~-------~~h----~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~--~~~~~~~~h~---------~~V~ 337 (415)
+ +.+ +-.+.|++..+|....|.|+-+|++.|..+..+ +.-..|+.|. .+|+
T Consensus 176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN 255 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence 1 111 224788888888888899999999999998876 4445666665 2578
Q ss_pred EEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecC
Q 014934 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 338 ~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
+|+|+|. +..|++.| .||++.+||-.....+.... +..+|++..|+.+|.+++.+.|++
T Consensus 256 si~FhP~-hgtlvTaG--sDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 256 SIAFHPV-HGTLVTAG--SDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ceEeecc-cceEEEec--CCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 8999995 45777776 69999999998877777754 678899999999999999877764
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=188.71 Aligned_cols=231 Identities=22% Similarity=0.392 Sum_probs=184.1
Q ss_pred cCCCcEEEEEcCCeEEEEECCCCCe-EEeEec-CCCCCeEEEEEcC--CCCeEEEEECCCcEEEEECCCCe--eeEEecC
Q 014934 175 WSSHNVLAVGLGNCVYLWNACSSKV-TKLCDL-GIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRCK--RVRTMEG 248 (415)
Q Consensus 175 ws~~~~la~~~d~~V~iwd~~~~~~-~~~~~~-~~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~~~~--~~~~l~~ 248 (415)
+...++.++++|+.|+|+....+.. ..+.++ +|.++|.-++|.. -|.+||+++.||.|.||.-++++ .......
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~ 100 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA 100 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh
Confidence 3344555556899999999877653 333333 9999999999976 79999999999999999988774 3445568
Q ss_pred CCccEEEEEeeC----CEEEEEeCCCcEEEEECCCCC--ccEEEeccccCCeEEEEEeCC---C-----------CEEEE
Q 014934 249 HRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKSEVCGLKWSYD---N-----------RELAS 308 (415)
Q Consensus 249 h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spd---g-----------~~las 308 (415)
|...|++++|.| -.|++++.||.|.+.+.+... ........|...|++++|.|- | +.|++
T Consensus 101 h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS 180 (299)
T KOG1332|consen 101 HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS 180 (299)
T ss_pred hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeec
Confidence 999999999984 489999999999999988662 223556789999999999985 4 56999
Q ss_pred EeCCCcEEEEECCCC--ceeEEeccCCCcEEEEEEcCCC---CcEEEEEcCCCCCeEEEEECCCC--cEEEEe--eCCCC
Q 014934 309 GGNDNRLFVWNQHST--QPVLKYCEHTAAVKAIAWSPHL---HGLLASGGGTADRCIRFWNTTTN--THLSCM--DTGSQ 379 (415)
Q Consensus 309 g~~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~sp~~---~~llasggg~~d~~I~iwd~~t~--~~~~~~--~~~~~ 379 (415)
|+.|+.|+||+..++ ....++++|...|+.++|+|.- +..+|+++ +||.+.||-.... +-..++ .....
T Consensus 181 gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~e~e~wk~tll~~f~~~ 258 (299)
T KOG1332|consen 181 GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDEEYEPWKKTLLEEFPDV 258 (299)
T ss_pred cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecCccCcccccccccCCcc
Confidence 999999999999876 3345688999999999999974 34688888 9999999987632 111111 13567
Q ss_pred EEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 380 V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+..+.||..|+.|++ ++.|+.|.+|+-.
T Consensus 259 ~w~vSWS~sGn~LaV--s~GdNkvtlwke~ 286 (299)
T KOG1332|consen 259 VWRVSWSLSGNILAV--SGGDNKVTLWKEN 286 (299)
T ss_pred eEEEEEeccccEEEE--ecCCcEEEEEEeC
Confidence 999999999999999 5679999999854
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=187.07 Aligned_cols=199 Identities=21% Similarity=0.288 Sum_probs=181.2
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (415)
.+.+.|..+.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.. +..|++|+.|+.|.+||+.+++ .
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk-v 93 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK-V 93 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe-e
Confidence 668999999999999999999999999999999999999999999999998876 6799999999999999999998 6
Q ss_pred EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC--ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEE
Q 014934 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST--QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIR 361 (415)
Q Consensus 284 ~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~ 361 (415)
.+.+.+|.++|+.++|+.+...+++|+-|..+++||.++. +|++.+......|.++....+ .+++|+ .||++|
T Consensus 94 ~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h---eIvaGS--~DGtvR 168 (307)
T KOG0316|consen 94 DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH---EIVAGS--VDGTVR 168 (307)
T ss_pred eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc---EEEeec--cCCcEE
Confidence 8999999999999999999999999999999999998764 789999889999999998854 666665 999999
Q ss_pred EEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 362 FWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 362 iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.||++.|...... .+.+|+++.|+++++.+++ |..|+.|++.|-.+++-
T Consensus 169 tydiR~G~l~sDy-~g~pit~vs~s~d~nc~La--~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 169 TYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLA--SSLDSTLRLLDKETGKL 217 (307)
T ss_pred EEEeecceeehhh-cCCcceeEEecCCCCEEEE--eeccceeeecccchhHH
Confidence 9999999865433 6789999999999999998 78899999999888764
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=218.72 Aligned_cols=240 Identities=24% Similarity=0.402 Sum_probs=196.7
Q ss_pred CCcceeEeecCC-CcEEEEEc---CCeEEEEECCCC--------C--eEEeEec-CCCCCeEEEEEcCCCCeEEEEECCC
Q 014934 166 DDFYLNLVDWSS-HNVLAVGL---GNCVYLWNACSS--------K--VTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHG 230 (415)
Q Consensus 166 ~~~~i~~l~ws~-~~~la~~~---d~~V~iwd~~~~--------~--~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg 230 (415)
++..|-+++.+| +..+|+|. |+.+.||+.+.- . ...++.. .|.+.|+|+.|+|||++||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 344588999999 55566653 677889987431 0 1122222 7899999999999999999999999
Q ss_pred cEEEEECCC------------------CeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccc
Q 014934 231 KVQIWDASR------------------CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGH 290 (415)
Q Consensus 231 ~V~iwd~~~------------------~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h 290 (415)
.|.||+... .+.+..+.+|...|..++|+ +.+|++++.|++|.+||.++. ..+..+.+|
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeecc
Confidence 999998762 24677889999999999999 579999999999999999999 579999999
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC-----------------------------------------------
Q 014934 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHST----------------------------------------------- 323 (415)
Q Consensus 291 ~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~----------------------------------------------- 323 (415)
...|-++.|.|-|++||+-+.|++|+||++.+.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 999999999999999999999999999996431
Q ss_pred -----ceeEEeccCCCcEEEEEEcCC--------C-------Cc-EEEEEcCCCCCeEEEEECCCCcEEEEee--CCCCE
Q 014934 324 -----QPVLKYCEHTAAVKAIAWSPH--------L-------HG-LLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQV 380 (415)
Q Consensus 324 -----~~~~~~~~h~~~V~~l~~sp~--------~-------~~-llasggg~~d~~I~iwd~~t~~~~~~~~--~~~~V 380 (415)
+.-..|-+|.+++.+++|+|. | .+ ++|+|+ .|++|.||++...+++..+. ....|
T Consensus 251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS--qDrSlSVW~T~~~RPl~vi~~lf~~SI 328 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS--QDRSLSVWNTALPRPLFVIHNLFNKSI 328 (942)
T ss_pred ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec--CCccEEEEecCCCCchhhhhhhhcCce
Confidence 111224579999999999982 1 11 566666 99999999998888877765 46789
Q ss_pred EEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 381 ~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
..++|+|||..|++ .+.||+|.+..++.
T Consensus 329 ~DmsWspdG~~Lfa--cS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 329 VDMSWSPDGFSLFA--CSLDGTVALIHFEE 356 (942)
T ss_pred eeeeEcCCCCeEEE--EecCCeEEEEEcch
Confidence 99999999999999 56899999999875
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-25 Score=218.41 Aligned_cols=197 Identities=20% Similarity=0.343 Sum_probs=163.2
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC----------------------------------------------
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR---------------------------------------------- 239 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~---------------------------------------------- 239 (415)
.|.+.|.++.|++||+|||+|+.||.|+||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6889999999999999999999999999997643
Q ss_pred --------------CeeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CC
Q 014934 240 --------------CKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DN 303 (415)
Q Consensus 240 --------------~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg 303 (415)
.++++.+.||.+.|.+|.|+ .++|++++.|++|++|++.... ++..+ .|..-|+|++|+| |.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~-CL~~F-~HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKE-CLKVF-SHNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcc-eeeEE-ecCCeeEEEEecccCC
Confidence 11233445899999999999 7899999999999999999776 56665 5999999999999 88
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--------
Q 014934 304 RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-------- 375 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-------- 375 (415)
++|++|+-|++|+||++...+.+.-. .-..-|++++|+|+|++.++ |+.+|.+++|++...+......
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avI---Gt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVI---GTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEE---EEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999999999999888776555 44478999999999986666 4599999999999877665443
Q ss_pred -CCCCEEEEEECCCCC-eEEEEEecCCCcEEEEECCC
Q 014934 376 -TGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 376 -~~~~V~~l~~s~~~~-~l~s~~g~~dg~I~vw~~~s 410 (415)
.+..|++++|.|... .++++ +.|..|+|+|...
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVT--SnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVT--SNDSRIRIYDGRD 533 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEe--cCCCceEEEeccc
Confidence 123799999997654 34442 4799999999844
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-24 Score=194.79 Aligned_cols=238 Identities=21% Similarity=0.364 Sum_probs=194.9
Q ss_pred CcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCC---CeEEEEECCCcEEEEECCCCeee
Q 014934 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN---THLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g---~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
|-.|..+.-.+.-+|..+.||.+++|+.. |+...... +|.+.|.+++|.-.. ..|++++.|.++++|..+.+..+
T Consensus 105 dDWVSsv~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~ 182 (423)
T KOG0313|consen 105 DDWVSSVKGASKWILTGSYDGTSRIWDLK-GKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK 182 (423)
T ss_pred hhhhhhhcccCceEEEeecCCeeEEEecC-CceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence 33677777777778888899999999975 56556655 999999999996533 36999999999999998766432
Q ss_pred ----EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCC------------------------CccEEEeccccCC
Q 014934 244 ----RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQ------------------------EDFVSKLSGHKSE 293 (415)
Q Consensus 244 ----~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~------------------------~~~~~~~~~h~~~ 293 (415)
..-.||...|-++... +..+++|+.|.+|.+|+.... ..++..+.+|..+
T Consensus 183 ~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~ 262 (423)
T KOG0313|consen 183 VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEP 262 (423)
T ss_pred hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccc
Confidence 3334999999999987 689999999999999993221 0246678899999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc--E-
Q 014934 294 VCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT--H- 370 (415)
Q Consensus 294 V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~--~- 370 (415)
|.++.|++ ...+.+++.|.+|+.||+.++..+.++. -...+.++..+|..+ ||++|+ .|+.|++||.+++. .
T Consensus 263 Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~-Ll~~gs--sdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 263 VSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSK-LLASGS--SDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred eeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccc-eeeecC--CCCceeecCCCCCCCcee
Confidence 99999997 7789999999999999999999888874 456789999999765 888887 89999999998864 2
Q ss_pred -EEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 371 -LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 371 -~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
...+.|.+.|.++.|+|...+++++ |+.||++++||+.+-+
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S-~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVS-GSYDNTVKLWDVRSTK 379 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEE-EecCCeEEEEEeccCC
Confidence 2233577899999999998877765 7889999999998865
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=212.18 Aligned_cols=227 Identities=21% Similarity=0.284 Sum_probs=195.8
Q ss_pred CcEEEEEc-CCeEEEEECCCCCe-EEeEecC----CCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe---cC
Q 014934 178 HNVLAVGL-GNCVYLWNACSSKV-TKLCDLG----IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM---EG 248 (415)
Q Consensus 178 ~~~la~~~-d~~V~iwd~~~~~~-~~~~~~~----~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l---~~ 248 (415)
.|++++.. +..++.|+...... ...+... ....+++|+.++.|++.++|+..|.|.+|++++|-....+ ..
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 47888875 46899999987654 2222211 2368999999999999999999999999999999888888 48
Q ss_pred CCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Q 014934 249 HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV 326 (415)
Q Consensus 249 h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~ 326 (415)
|.++|++++.+ +..+++++.+|.+.+||..... +...+. -...+.++..+.....+|.+..|-.|.++|..+.+.+
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv 569 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV 569 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCCcc-eeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh
Confidence 99999999998 5789999999999999998776 444444 3457888889988899999999999999999999999
Q ss_pred EEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEE
Q 014934 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (415)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw 406 (415)
..|.+|.+.|++++|||+|++++.++ .|++|++||+.++.++..+....+..++.|+|+|.+|+++|- ..+-|++|
T Consensus 570 R~f~gh~nritd~~FS~DgrWlisas---mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hv-d~~gIylW 645 (910)
T KOG1539|consen 570 REFWGHGNRITDMTFSPDGRWLISAS---MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHV-DQNGIYLW 645 (910)
T ss_pred HHhhccccceeeeEeCCCCcEEEEee---cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEe-cCceEEEE
Confidence 99999999999999999999777765 799999999999999999999999999999999999999985 45789999
Q ss_pred ECCC
Q 014934 407 RYPT 410 (415)
Q Consensus 407 ~~~s 410 (415)
-=.+
T Consensus 646 sNks 649 (910)
T KOG1539|consen 646 SNKS 649 (910)
T ss_pred Echh
Confidence 7544
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-25 Score=218.38 Aligned_cols=239 Identities=17% Similarity=0.322 Sum_probs=196.2
Q ss_pred ceeEeecCC--CcEEEEEc-CCeEEEEECCC---CCeEEeEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCCe
Q 014934 169 YLNLVDWSS--HNVLAVGL-GNCVYLWNACS---SKVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~-d~~V~iwd~~~---~~~~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
.++-|.|+. .++||++. .|.|.+||+.. .+....+. .|...|.++.|++ ...+|++|+.||.|++||++..+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 355678987 78888884 68999999977 33333443 8999999999998 45799999999999999999998
Q ss_pred eeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 014934 242 RVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iw 318 (415)
-..++.+....|.++.|+ +++|+++...|.+.+||+|....+...+.+|.++|.++.|+|++.+|||||.|+.|+||
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 888999999999999999 47999999999999999999998889999999999999999999999999999999999
Q ss_pred ECCCCce--eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE-EEEee-CCCCEEEEEECCCCCeEEE
Q 014934 319 NQHSTQP--VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH-LSCMD-TGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 319 d~~~~~~--~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~-~~~~~-~~~~V~~l~~s~~~~~l~s 394 (415)
|..+.+. +.++ ...++|..|+|-|...+.||+++--.|-.|+|||++..-. ...+. |...++.++|......++-
T Consensus 248 d~t~~~~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~ 326 (839)
T KOG0269|consen 248 DMTDSRAKPKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLW 326 (839)
T ss_pred eccCCCccceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeE
Confidence 9986543 4444 3457899999999999999988644689999999986543 33443 6677888999774444333
Q ss_pred EEecCCCcEEEEECCC
Q 014934 395 THGYSQNQIIVWRYPT 410 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s 410 (415)
+ ++.|+.|..-.+.+
T Consensus 327 s-~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 327 S-CSKDGTVLQHLFKN 341 (839)
T ss_pred e-ecCccHHHHhhhhc
Confidence 3 67888876554443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=209.46 Aligned_cols=238 Identities=18% Similarity=0.272 Sum_probs=207.2
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
.|..+++|. ..++++|.++.|+||+..+.++.+.+. .+.+.+..|.|.++++++|...|.+.+||+.+...+.+..
T Consensus 375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~ 451 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR 451 (888)
T ss_pred heeEEEeecCceeeeecCCCcEEEEEccCcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh
Confidence 488999999 556666678999999999999998886 3489999999999999999999999999999999999999
Q ss_pred CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC-------ccEE----EeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 248 GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE-------DFVS----KLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 248 ~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-------~~~~----~~~~h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
+|.+.|+.++.. +..+++||.|.+|++||..-.. +.+. ..-.-...|.|+++||||++||++--|++
T Consensus 452 AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 452 AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCe
Confidence 999999999997 5789999999999999975211 1010 11123467999999999999999999999
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEE
Q 014934 315 LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 315 I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~ 393 (415)
|+||-+.+-+....+-+|.-+|.++..+|++. ++++|+ .|+.|++|-+.-|.|-..+- |...|.++.|.|....+.
T Consensus 532 VkVyflDtlKFflsLYGHkLPV~smDIS~DSk-livTgS--ADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FF 608 (888)
T KOG0306|consen 532 VKVYFLDTLKFFLSLYGHKLPVLSMDISPDSK-LIVTGS--ADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFF 608 (888)
T ss_pred EEEEEecceeeeeeecccccceeEEeccCCcC-eEEecc--CCCceEEeccccchhhhhhhcccCceeEEEEcccceeEE
Confidence 99999999999999999999999999999987 888988 89999999999999987764 778999999999888777
Q ss_pred EEEecCCCcEEEEECCCCccc
Q 014934 394 STHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s~~~l 414 (415)
+ .+.|+.|+-||-...+.+
T Consensus 609 t--~gKD~kvKqWDg~kFe~i 627 (888)
T KOG0306|consen 609 T--CGKDGKVKQWDGEKFEEI 627 (888)
T ss_pred E--ecCcceEEeechhhhhhh
Confidence 7 569999999998776654
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=200.15 Aligned_cols=230 Identities=21% Similarity=0.348 Sum_probs=197.5
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.|+.+++.+ ..+||.+.|+.+++|+....+....+. +|.+.|+++.|......+++|+.|.+|++||+....+.+++
T Consensus 221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLs-GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLS-GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred CcceeeecCCCceEEeecCCCceeeeeccchhhhhhhc-ccccceeeehhhccccceeeccccchhhhhhhhhhheeccc
Confidence 478889987 467888899999999999999888887 79999999999987777999999999999999998888776
Q ss_pred cCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Q 014934 247 EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV 326 (415)
Q Consensus 247 ~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~ 326 (415)
. ....+.+|..++..+++|-.|+.|++||+++.. +......+. .|+++..+++|..|.+++.|..+.+.|+++....
T Consensus 300 l-~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~-~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~ 376 (459)
T KOG0288|consen 300 L-PGSQCNDIVCSISDVISGHFDKKVRFWDIRSAD-KTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIR 376 (459)
T ss_pred c-ccccccceEecceeeeecccccceEEEeccCCc-eeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEE
Confidence 6 345677888888899999999999999999987 455555554 8999999999999999999999999999999887
Q ss_pred EEeccC----CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC---CCCEEEEEECCCCCeEEEEEecC
Q 014934 327 LKYCEH----TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 327 ~~~~~h----~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~---~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
+.+... ....+.+.|||++. ++++|+ .||.|+||++.++++...+.. ...|+++.|+|.|..|++ .+.
T Consensus 377 ~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS--~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Lls--adk 451 (459)
T KOG0288|consen 377 QTFSAEGFKCASDWTRVVFSPDGS-YVAAGS--ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLS--ADK 451 (459)
T ss_pred EEeeccccccccccceeEECCCCc-eeeecc--CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhc--ccC
Confidence 777532 23478899999998 555555 899999999999998877752 236999999999999999 668
Q ss_pred CCcEEEEE
Q 014934 400 QNQIIVWR 407 (415)
Q Consensus 400 dg~I~vw~ 407 (415)
++.+.+|.
T Consensus 452 ~~~v~lW~ 459 (459)
T KOG0288|consen 452 QKAVTLWT 459 (459)
T ss_pred CcceEecC
Confidence 89999993
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-22 Score=172.78 Aligned_cols=250 Identities=19% Similarity=0.335 Sum_probs=197.0
Q ss_pred CCCCceeccCCCCCCCcceeEeecCC-CcEEEEEc-CCeEEEEEC--CCCCe----EEeEecCCCCCeEEEEEcCC----
Q 014934 152 PRSPYKILDAPALQDDFYLNLVDWSS-HNVLAVGL-GNCVYLWNA--CSSKV----TKLCDLGIDDSVCSVGWANR---- 219 (415)
Q Consensus 152 ~~~p~~~ld~~~l~~~~~i~~l~ws~-~~~la~~~-d~~V~iwd~--~~~~~----~~~~~~~~~~~V~~v~~sp~---- 219 (415)
++.|-.++-...-...-.|.|.+|+| +.+||+|+ |..|++... ++.+. +++. -|.+.|..++|-.+
T Consensus 74 ~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~n--mhdgtirdl~fld~~~s~ 151 (350)
T KOG0641|consen 74 AKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFN--MHDGTIRDLAFLDDPESG 151 (350)
T ss_pred ccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeee--ecCCceeeeEEecCCCcC
Confidence 34444444444444455788999999 99999995 677877544 33322 2222 57899999999753
Q ss_pred CCeEEEEE-CCCcEEEEECCCCeeeEEecCCCccEEEE-EeeCCEEEEEeCCCcEEEEECCCCCccEEEecc--c-----
Q 014934 220 NTHLAVGT-SHGKVQIWDASRCKRVRTMEGHRLRVGAL-AWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSG--H----- 290 (415)
Q Consensus 220 g~~la~g~-~dg~V~iwd~~~~~~~~~l~~h~~~V~~l-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h----- 290 (415)
|..|++++ .|..|.+-|..+++....+.+|.+-|.++ .|++-.+++|+.|.+|++||++-.. ++..+.. |
T Consensus 152 ~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~gle 230 (350)
T KOG0641|consen 152 GAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLE 230 (350)
T ss_pred ceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcc
Confidence 45677654 36678888999999999999999999887 6899999999999999999999876 4554431 2
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-
Q 014934 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT- 369 (415)
Q Consensus 291 ~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~- 369 (415)
...|.+++..|.|++|++|-.|....+||++.+++++.|..|.+.|.++.|+|... .+.+++ .|..|++-|+...-
T Consensus 231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~-yllt~s--yd~~ikltdlqgdla 307 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH-YLLTCS--YDMKIKLTDLQGDLA 307 (350)
T ss_pred cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce-EEEEec--ccceEEEeecccchh
Confidence 25699999999999999999999999999999999999999999999999999877 455555 89999999987421
Q ss_pred ----EEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 370 ----HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 370 ----~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.+..-+|...+..+.|+|+.--+++ .+.|.+..+|-++
T Consensus 308 ~el~~~vv~ehkdk~i~~rwh~~d~sfis--ssadkt~tlwa~~ 349 (350)
T KOG0641|consen 308 HELPIMVVAEHKDKAIQCRWHPQDFSFIS--SSADKTATLWALN 349 (350)
T ss_pred hcCceEEEEeccCceEEEEecCccceeee--ccCcceEEEeccC
Confidence 1222247888999999999988888 5679999999875
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-25 Score=203.01 Aligned_cols=248 Identities=20% Similarity=0.298 Sum_probs=204.6
Q ss_pred CCCCCCceeccCCCCCCCcceeEeecCCC-cEEEEE-cCCeEEEEECCCCCe--EEeEecCCCCCeEEEEEcCCCCeEEE
Q 014934 150 KVPRSPYKILDAPALQDDFYLNLVDWSSH-NVLAVG-LGNCVYLWNACSSKV--TKLCDLGIDDSVCSVGWANRNTHLAV 225 (415)
Q Consensus 150 ~i~~~p~~~ld~~~l~~~~~i~~l~ws~~-~~la~~-~d~~V~iwd~~~~~~--~~~~~~~~~~~V~~v~~sp~g~~la~ 225 (415)
.+|..-..++|++.- .++.+.|-++ ..|+.| .|..|++|+...++. ...+. +..+.|+++.|.++++++++
T Consensus 162 ~lpS~~~~~ld~h~g----ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iA 236 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEG----EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIA 236 (459)
T ss_pred ccchhhhhhhhcccc----ccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEe
Confidence 345555567777653 4788899884 666665 688999999987773 33332 56788999999999999999
Q ss_pred EECCCcEEEEECCCCeeeEEecCCCccEEEEEee-C-CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCC
Q 014934 226 GTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS-S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303 (415)
Q Consensus 226 g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~-~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 303 (415)
.+.|+.+++|++...+...++.+|+..|+++.|. . ..+++|+.|.+|++||+.... +...+. ....+..|..+ +
T Consensus 237 as~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l-~~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVL-PGSQCNDIVCS--I 312 (459)
T ss_pred ecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eecccc-ccccccceEec--c
Confidence 9999999999999999999999999999999997 3 349999999999999998865 343333 22345555555 5
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-----CCC
Q 014934 304 RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-----TGS 378 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-----~~~ 378 (415)
..+++|..|++|+.||+++..+......+. .|+++..++++..+++++ .|.++.+.|+++.+..+.+. ..+
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss---RDdtl~viDlRt~eI~~~~sA~g~k~as 388 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS---RDDTLKVIDLRTKEIRQTFSAEGFKCAS 388 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec---CCCceeeeecccccEEEEeecccccccc
Confidence 678999999999999999999999886665 999999999999888774 79999999999988877764 456
Q ss_pred CEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 379 QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 379 ~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
..+.+.|||++.|+++ |+.||.|+||++.+++
T Consensus 389 DwtrvvfSpd~~YvaA--GS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAA--GSADGSVYIWSVFTGK 420 (459)
T ss_pred ccceeEECCCCceeee--ccCCCcEEEEEccCce
Confidence 7899999999999999 9999999999998765
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-24 Score=200.11 Aligned_cols=192 Identities=26% Similarity=0.503 Sum_probs=166.7
Q ss_pred EeecCC---CcEEEEEcCCeEEEEECCCCCe-------EEeEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECC--
Q 014934 172 LVDWSS---HNVLAVGLGNCVYLWNACSSKV-------TKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDAS-- 238 (415)
Q Consensus 172 ~l~ws~---~~~la~~~d~~V~iwd~~~~~~-------~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~-- 238 (415)
.|.|++ +.+|+++.|+.|.+||+..... ...+. +|.+.|..++|++ +...+++++.|+.+.|||++
T Consensus 182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~ 260 (422)
T KOG0264|consen 182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN 260 (422)
T ss_pred ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEee-cCCcceehhhccccchhhheeecCCCeEEEEEcCCC
Confidence 488998 5667777889999999875432 22232 8999999999999 55789999999999999999
Q ss_pred CCeeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC-CCEEEEEeCCCc
Q 014934 239 RCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD-NRELASGGNDNR 314 (415)
Q Consensus 239 ~~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~lasg~~dg~ 314 (415)
+.+......+|.+.|.|++|++ .+|++||.|++|.+||+|+...+++.+.+|..+|.++.|+|+ ...||+++.|+.
T Consensus 261 ~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 261 TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc
Confidence 5667778889999999999994 799999999999999999999899999999999999999995 567899999999
Q ss_pred EEEEECCCC--------------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 315 LFVWNQHST--------------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 315 I~iwd~~~~--------------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
+.|||+..- ++++.-.+|++.|..+.|+|...++++|.. .|+.+.||.+.
T Consensus 341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva--eDN~LqIW~~s 404 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA--EDNILQIWQMA 404 (422)
T ss_pred EEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec--CCceEEEeecc
Confidence 999998631 345666799999999999999999999998 99999999986
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-25 Score=198.39 Aligned_cols=203 Identities=18% Similarity=0.313 Sum_probs=174.8
Q ss_pred EeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec--------CCCccEEEEEee--CCEEEEEeCCC
Q 014934 201 KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME--------GHRLRVGALAWS--SSLLSSGSRDK 270 (415)
Q Consensus 201 ~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~--------~h~~~V~~l~~~--~~~l~sgs~dg 270 (415)
+.+.++..+.+-|..|+|||++|++|+.||.|.+|+..+|+....++ .+..+|.|+.|+ ...|++|+.||
T Consensus 206 r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 206 RSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred hheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 44556778889999999999999999999999999999987665543 467899999998 57999999999
Q ss_pred cEEEEECCCCCccEEEec-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEE
Q 014934 271 SILQRDIRAQEDFVSKLS-GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 349 (415)
Q Consensus 271 ~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 349 (415)
.|++|.++++. +++.+. +|...|+++.|+.|+..+++++.|.+++|.-+++|+++..|.+|...|+...|.++|++++
T Consensus 286 kIKvWri~tG~-ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii 364 (508)
T KOG0275|consen 286 KIKVWRIETGQ-CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII 364 (508)
T ss_pred cEEEEEEecch-HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEE
Confidence 99999999998 455555 9999999999999999999999999999999999999999999999999999999999666
Q ss_pred EEEcCCCCCeEEEEECCCCcEEEEee---CCCCEEEEEECCCCC-eEEEEEecCCCcEEEEECC
Q 014934 350 ASGGGTADRCIRFWNTTTNTHLSCMD---TGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 350 asggg~~d~~I~iwd~~t~~~~~~~~---~~~~V~~l~~s~~~~-~l~s~~g~~dg~I~vw~~~ 409 (415)
.++ .||+|++|+..+++|+.+++ +...|.++..-|.+. .+++ ....++|.|.++.
T Consensus 365 saS---sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV--CNrsntv~imn~q 423 (508)
T KOG0275|consen 365 SAS---SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV--CNRSNTVYIMNMQ 423 (508)
T ss_pred Eec---CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE--EcCCCeEEEEecc
Confidence 655 69999999999999999887 445688887777553 4455 3466788887764
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=178.43 Aligned_cols=237 Identities=15% Similarity=0.246 Sum_probs=196.0
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
+..++-+.++. +.+|..+ -|..+.+|-..+|+..-.+. +|.+.|.|+...-+.+++++|+.|.+++|||+++|+++.
T Consensus 10 ERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la 88 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA 88 (327)
T ss_pred ccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec-CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE
Confidence 44577888887 6665555 68899999998999888887 999999999999999999999999999999999999999
Q ss_pred EecCCCccEEEEEee--CCEEEEEeC-----CCcEEEEECCCC------CccEEEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 245 TMEGHRLRVGALAWS--SSLLSSGSR-----DKSILQRDIRAQ------EDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~--~~~l~sgs~-----dg~I~iwd~~~~------~~~~~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
.++ ...+|..+.|+ +++++.... .+.|.++|++.. +.+...+..+...++.+-|.|-++.|++|..
T Consensus 89 ~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe 167 (327)
T KOG0643|consen 89 TWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE 167 (327)
T ss_pred Eee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC
Confidence 888 56779999998 455555443 357999999842 2356777888899999999999999999999
Q ss_pred CCcEEEEECCCCc-eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee---------------
Q 014934 312 DNRLFVWNQHSTQ-PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--------------- 375 (415)
Q Consensus 312 dg~I~iwd~~~~~-~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--------------- 375 (415)
||.|.+||+++++ .+...+.|...|+.+.++++.. .+++++ .|.+-++||+.+-++++++.
T Consensus 168 ~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s--~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d 244 (327)
T KOG0643|consen 168 DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGS--KDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLD 244 (327)
T ss_pred CCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecc--cCccceeeeccceeeEEEeeecccccceecccccc
Confidence 9999999999985 4555578999999999999987 666666 89999999998755444321
Q ss_pred -----------------------------------------CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 376 -----------------------------------------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 376 -----------------------------------------~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
|-++|++++|+|+|+-.++ |++||.|++.-+.+
T Consensus 245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsS--GGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSS--GGEDGYVRLHHFDS 318 (327)
T ss_pred eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccccc--CCCCceEEEEEecc
Confidence 2256789999999998888 88999999887653
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=197.34 Aligned_cols=235 Identities=18% Similarity=0.315 Sum_probs=185.4
Q ss_pred eeEeecCCCc--EEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC---------
Q 014934 170 LNLVDWSSHN--VLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA--------- 237 (415)
Q Consensus 170 i~~l~ws~~~--~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~--------- 237 (415)
|.|++=+|+. .+|+| .||.|+|||+...++...+. .|.+.|..|++.. ..+++++.|.+|+.|-+
T Consensus 69 V~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~til 145 (433)
T KOG0268|consen 69 VSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTIL 145 (433)
T ss_pred cchhhcCcchhhhhhccccCceEEEEehhhhhhhheee-cccCceeeEEecc--cceEEecCCcceeeeeccCCcceeee
Confidence 6788888833 44444 69999999999988888887 8889999999986 55677777877777753
Q ss_pred -----------------------------CCCeeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEE
Q 014934 238 -----------------------------SRCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVS 285 (415)
Q Consensus 238 -----------------------------~~~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~ 285 (415)
....++..+.-....|.++.|++ .+|++|+.|+.|.+||+|.... ++
T Consensus 146 g~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P-l~ 224 (433)
T KOG0268|consen 146 GKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP-LK 224 (433)
T ss_pred ccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc-cc
Confidence 22223344444445677777774 6899999999999999999874 33
Q ss_pred EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE
Q 014934 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 286 ~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd 364 (415)
.+. -...-+.|+|+|.+-.|++|++|..++.||++.- +++..+.+|..+|.+++|+|.|. -+++|+ .|++|+||.
T Consensus 225 KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~-Efvsgs--yDksIRIf~ 300 (433)
T KOG0268|consen 225 KVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ-EFVSGS--YDKSIRIFP 300 (433)
T ss_pred eee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc-hhcccc--ccceEEEee
Confidence 322 2345678999998888999999999999999874 67888889999999999999998 566666 999999999
Q ss_pred CCCCcEEEEeeC--CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 365 TTTNTHLSCMDT--GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 365 ~~t~~~~~~~~~--~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+..+.....+.+ -..|.++.||.|.+++++ |++|+.|++|+....+++
T Consensus 301 ~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~S--GSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 301 VNHGHSRDIYHTKRMQHVFCVKYSMDSKYIIS--GSDDGNVRLWKAKASEKL 350 (433)
T ss_pred cCCCcchhhhhHhhhheeeEEEEeccccEEEe--cCCCcceeeeecchhhhc
Confidence 998865444433 356999999999999999 999999999998765543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=187.20 Aligned_cols=217 Identities=19% Similarity=0.285 Sum_probs=186.8
Q ss_pred cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe-eeEEecCCCccEEEEEee--CC
Q 014934 185 LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-RVRTMEGHRLRVGALAWS--SS 261 (415)
Q Consensus 185 ~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~-~~~~l~~h~~~V~~l~~~--~~ 261 (415)
.|-+-++||+-+|.....+ .|.-.|.+++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+.|. .+
T Consensus 79 adftakvw~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~ 156 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK 156 (334)
T ss_pred ccchhhhhhhhhhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc
Confidence 4668999999999876665 688899999999999999999999999999998754 556788999999999998 57
Q ss_pred EEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEE
Q 014934 262 LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW 341 (415)
Q Consensus 262 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 341 (415)
.+++.+.|++|++||.+++.. ++.+. ...+|.++..+++|++|.++. .+.|..||..+-.++..++ -...|.+..+
T Consensus 157 ~iLSSadd~tVRLWD~rTgt~-v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~nV~SASL 232 (334)
T KOG0278|consen 157 CILSSADDKTVRLWDHRTGTE-VQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCNVESASL 232 (334)
T ss_pred eEEeeccCCceEEEEeccCcE-EEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc-Cccccccccc
Confidence 888889999999999999984 55544 456899999999999876654 4679999999998888774 4567899999
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe--eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~--~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+|+. .++++|| +|..++.||..+|+.+..+ .|.++|.++.|+|+|...++ |+.||+|++|.....+
T Consensus 233 ~P~k-~~fVaGg--ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAs--GSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 233 HPKK-EFFVAGG--EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYAS--GSEDGTIRLWQTTPGK 300 (334)
T ss_pred cCCC-ceEEecC--cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeec--cCCCceEEEEEecCCC
Confidence 9997 5888887 9999999999999998875 37789999999999998888 9999999999986543
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=195.88 Aligned_cols=220 Identities=18% Similarity=0.299 Sum_probs=188.8
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC--------
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS-------- 238 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~-------- 238 (415)
.++++.-+| +.+|++| -.+.||+|.+.+|.+..++. .|-..|+|+.|+-||.+|++|+.||.|.+|++.
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~ 161 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND 161 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC
Confidence 478888888 8888888 68999999999999988885 889999999999999999999999999999873
Q ss_pred -CCeeeEEecCCCccEEEEEee----CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC
Q 014934 239 -RCKRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN 313 (415)
Q Consensus 239 -~~~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg 313 (415)
+-+.++.+..|.-+|+++... ...|+++|.|.+|++||+..+. .+..+ .....+.+++.+|-++.+..|+.+|
T Consensus 162 ~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti-~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 162 HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTI-TFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-eeEEE-ecCCcceeEEEcccccEEEecCCcc
Confidence 346778899999999999987 2589999999999999999886 34333 3457899999999999999999999
Q ss_pred cEEEEECCCC----------------ceeEEeccCCC--cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 314 RLFVWNQHST----------------QPVLKYCEHTA--AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 314 ~I~iwd~~~~----------------~~~~~~~~h~~--~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
.|.+.++... ..+..+.+|.+ +|+|++.+-||. +|++|+ .||.++|||+.+.++++++.
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd--~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGD--EDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeC--CCCCEEEEecchHHHHHHHh
Confidence 9999887532 23456678988 999999999997 999987 99999999999999999887
Q ss_pred -CCCCEEEEEECCCCCeEEE
Q 014934 376 -TGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 376 -~~~~V~~l~~s~~~~~l~s 394 (415)
..++|+.+.+.|-.+..+.
T Consensus 317 ~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hhccccceeEeeccccceec
Confidence 6789999999776544443
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=211.15 Aligned_cols=237 Identities=19% Similarity=0.347 Sum_probs=187.3
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCCCCeEE--eEecCC----CCCeEEEEEcC-CCCeEEEEECCCcEEEEECCC--
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTK--LCDLGI----DDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASR-- 239 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~--~~~~~~----~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~-- 239 (415)
.+.|.-.+ .+-|+++....+.||.+....... ....+. .-.+..|.|.. +.++||+++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~ 121 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI 121 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence 45566666 344555545556666554432211 111111 12356688885 568999999999999999977
Q ss_pred -CeeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCc
Q 014934 240 -CKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNR 314 (415)
Q Consensus 240 -~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~ 314 (415)
.+.+..|..|...+.++.|+ +++|++|++||+|++||+|... ....+.+....|..++|+| .+..|+++...|.
T Consensus 122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~ 200 (839)
T KOG0269|consen 122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY 200 (839)
T ss_pred cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-ccccccccchhhhceeeccCCCceEEEecCCce
Confidence 56777889999999999998 7999999999999999999887 4667777888999999998 6788999999999
Q ss_pred EEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc--EEEEeeCCCCEEEEEECCCCCe
Q 014934 315 LFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT--HLSCMDTGSQVCNLVWSKNVNE 391 (415)
Q Consensus 315 I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~--~~~~~~~~~~V~~l~~s~~~~~ 391 (415)
|.+||++.. ++..++..|.+.|.++.|+|++ .+||+|| .|+.|+|||+.+++ .+.++.+..+|..+.|-|...+
T Consensus 201 lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGG--RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 201 LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGG--RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred EEEeeccCchhHHHHhhcccCceEEEeecCCC-ceeeecC--CCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 999999865 6677888999999999999965 5999997 99999999998654 5778889999999999998776
Q ss_pred EE-EEEecCCCcEEEEECCC
Q 014934 392 LV-STHGYSQNQIIVWRYPT 410 (415)
Q Consensus 392 l~-s~~g~~dg~I~vw~~~s 410 (415)
.+ +++-..|-.|+|||+..
T Consensus 278 hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred hhhhhhccccceEEEEeecc
Confidence 54 43334578999999853
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=194.01 Aligned_cols=235 Identities=22% Similarity=0.352 Sum_probs=200.2
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeE-EeEe----------------cCCCCCeEEEEEcCCCCeEEEEECC
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVT-KLCD----------------LGIDDSVCSVGWANRNTHLAVGTSH 229 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~-~~~~----------------~~~~~~V~~v~~sp~g~~la~g~~d 229 (415)
.+.++..++ ...+.++.+++|.-|++.+++.. .+.. ..|...+.+++.++||++||+|+.|
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d 223 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRD 223 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCC
Confidence 477888888 35666667899999999887643 1111 1567789999999999999999999
Q ss_pred CcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEE
Q 014934 230 GKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELA 307 (415)
Q Consensus 230 g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 307 (415)
..|+||+.++.+.+..+.+|.+.|.+++|- .+.|++++.|+.|++|++.... .+.++.+|...|.+|....-++.+-
T Consensus 224 ~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vetlyGHqd~v~~IdaL~reR~vt 302 (479)
T KOG0299|consen 224 RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YVETLYGHQDGVLGIDALSRERCVT 302 (479)
T ss_pred ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HHHHHhCCccceeeechhcccceEE
Confidence 999999999999999999999999999998 5899999999999999999887 6888999999999999888888877
Q ss_pred EEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--C---------
Q 014934 308 SGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--T--------- 376 (415)
Q Consensus 308 sg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--~--------- 376 (415)
+|+.|.++++|++.... ...|.+|.+.+-|++|-.+. -+++|+ .+|.|.+|++.+.+++.... |
T Consensus 303 VGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In~~--HfvsGS--dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~ 377 (479)
T KOG0299|consen 303 VGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFINDE--HFVSGS--DNGSIALWSLLKKKPLFTSRLAHGVIPELDPV 377 (479)
T ss_pred eccccceeEEEeccccc-eeeeeCCCCCeeeEEEeccc--ceeecc--CCceEEEeeecccCceeEeeccccccCCcccc
Confidence 88899999999995443 34566899999999999775 466766 89999999999988877653 2
Q ss_pred --CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 377 --GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 377 --~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
...|++++..+..+.+++ |+.+|.|++|.+..+
T Consensus 378 ~~~~Witsla~i~~sdL~as--GS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLAS--GSWSGCVRLWKIEDG 412 (479)
T ss_pred ccccceeeeEecccCceEEe--cCCCCceEEEEecCC
Confidence 126899999999999988 888999999999876
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-24 Score=205.73 Aligned_cols=228 Identities=21% Similarity=0.324 Sum_probs=196.0
Q ss_pred Cc-EEEEEcCCeEEEEECCCCCe------EEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC--eeeEEecC
Q 014934 178 HN-VLAVGLGNCVYLWNACSSKV------TKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC--KRVRTMEG 248 (415)
Q Consensus 178 ~~-~la~~~d~~V~iwd~~~~~~------~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~--~~~~~l~~ 248 (415)
++ ++.+|.|+.|++|+.....- ...++ .|.+.|..+....+|+.|++++.|-+|++|+...+ -++.++..
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~ 115 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT 115 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhc
Confidence 55 55666899999999765332 22222 67899999999999999999999999999999877 57888899
Q ss_pred CCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCc---------cEEEec-cccCCeEEEEEeCCCCEEEEEeCCCcE
Q 014934 249 HRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQED---------FVSKLS-GHKSEVCGLKWSYDNRELASGGNDNRL 315 (415)
Q Consensus 249 h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~---------~~~~~~-~h~~~V~~l~~spdg~~lasg~~dg~I 315 (415)
|...|.|++.- ...+++||-|+.|.+||+.++.. ....+. ++...|.+++.++.|..|++|+..+.|
T Consensus 116 H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~l 195 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDL 195 (735)
T ss_pred ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccce
Confidence 99999999993 57899999999999999997631 122233 788999999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEE
Q 014934 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s 394 (415)
++||.++++.+.++.+|+..|+++..+++|..+|.++ .||+|++||+...+++.++. |...|+++..+++-..+.+
T Consensus 196 r~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s---SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 196 RLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS---SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS 272 (735)
T ss_pred EEeccccccceeeeeccccceEEEEEcCCCCeEeecC---CCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe
Confidence 9999999999999999999999999999998666644 69999999999999998876 6667999999999999999
Q ss_pred EEecCCCcEEEEECCCC
Q 014934 395 THGYSQNQIIVWRYPTM 411 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s~ 411 (415)
|+.|+.|..=|+.+.
T Consensus 273 --G~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 273 --GGRDGNIYRTDLRNP 287 (735)
T ss_pred --cCCCCcEEecccCCc
Confidence 899999998888764
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=196.93 Aligned_cols=242 Identities=21% Similarity=0.374 Sum_probs=190.3
Q ss_pred CcceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEe-----------cCCCCCeEEEEEcCCC-CeEEEEECCCcE
Q 014934 167 DFYLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCD-----------LGIDDSVCSVGWANRN-THLAVGTSHGKV 232 (415)
Q Consensus 167 ~~~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~-----------~~~~~~V~~v~~sp~g-~~la~g~~dg~V 232 (415)
.-.++++.|++ +.+|+++.....+|+|-...++.+.+. .+|...++|.+|+|+. ..+++++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 33588999999 557777777889999987666655442 2788899999999965 578999999999
Q ss_pred EEEECCCCee-eEEec-----CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC--ccEEEeccccC--CeEEEEEe
Q 014934 233 QIWDASRCKR-VRTME-----GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKS--EVCGLKWS 300 (415)
Q Consensus 233 ~iwd~~~~~~-~~~l~-----~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~--~V~~l~~s 300 (415)
+|||+...+. ...++ +..-.++.++|+ +..|++|+.||.|.+||.+... .....-.+|.. .|+||+||
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 9999976542 22222 344578899999 5789999999999999986543 12334457776 99999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-ceeEEeccC--CCcEEEEEEcCCCCcEEEEEc----CCCCCeEEEEECCCCcEEEE
Q 014934 301 YDNRELASGGNDNRLFVWNQHST-QPVLKYCEH--TAAVKAIAWSPHLHGLLASGG----GTADRCIRFWNTTTNTHLSC 373 (415)
Q Consensus 301 pdg~~lasg~~dg~I~iwd~~~~-~~~~~~~~h--~~~V~~l~~sp~~~~llasgg----g~~d~~I~iwd~~t~~~~~~ 373 (415)
+||++|++-+.|+.++|||+++. +++....+- ..+-+.++|+|+.+ |+++|. |...+.+.|||..+-+.++.
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred cccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEE
Confidence 99999999999999999999875 455555442 33457899999987 777764 23467899999999999999
Q ss_pred ee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 374 MD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 374 ~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+. ....|..+.|+|.-+.|.+ |..||.++||==++.
T Consensus 453 i~i~~aSvv~~~WhpkLNQi~~--gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 453 IDISTASVVRCLWHPKLNQIFA--GSGDGTAHVYYDPNE 489 (641)
T ss_pred ecCCCceEEEEeecchhhheee--ecCCCceEEEECccc
Confidence 87 4677999999999999998 677999998865543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-22 Score=203.49 Aligned_cols=183 Identities=19% Similarity=0.331 Sum_probs=150.6
Q ss_pred EECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCC-------ccEEEeccccCCeE
Q 014934 226 GTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQE-------DFVSKLSGHKSEVC 295 (415)
Q Consensus 226 g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~-------~~~~~~~~h~~~V~ 295 (415)
|+.+|.|++|+......+..+.+|.+.|.+++|++ ++|++|+.||+|++||+.... .++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 56788999999988788889999999999999984 699999999999999998642 13446788999999
Q ss_pred EEEEeCCCCE-EEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 296 GLKWSYDNRE-LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 296 ~l~~spdg~~-lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
+++|+|++.. ||+|+.|+.|+|||+++++.+..+. |...|.+++|+|+|. +|++++ .|+.|+|||+++++.+..+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~-lLat~s--~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN-LLSGTC--VGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC-EEEEEe--cCCEEEEEECCCCcEEEEE
Confidence 9999998875 5789999999999999998887774 667899999999998 666665 7999999999999998877
Q ss_pred e-CCCCE-----EEEEECCCCCeEEEEEecCC---CcEEEEECCCCcc
Q 014934 375 D-TGSQV-----CNLVWSKNVNELVSTHGYSQ---NQIIVWRYPTMSK 413 (415)
Q Consensus 375 ~-~~~~V-----~~l~~s~~~~~l~s~~g~~d---g~I~vw~~~s~~~ 413 (415)
. |...+ ....|++++.+|+++ |.++ ++|+|||+..+.+
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTt-G~d~~~~R~VkLWDlr~~~~ 252 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILST-GFSKNNMREMKLWDLKNTTS 252 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEE-EcCCCCccEEEEEECCCCCC
Confidence 6 33332 223456898988885 4433 4799999986543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-25 Score=214.60 Aligned_cols=224 Identities=26% Similarity=0.438 Sum_probs=195.1
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
+++++..-. .++++.|. +..+-+|.+..-.....+. +|..+|.||.|+++..+|+.|+.+|+|++||++..+.++++
T Consensus 30 av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL 108 (825)
T KOG0267|consen 30 AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL 108 (825)
T ss_pred hhceeeeeccceeeccCCCceeeccccccCCchhheee-ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh
Confidence 455555422 56666664 5567799876554444443 89999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 247 EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 247 ~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
.+|...+..+.|+| .++++|+.|+.+++||++... +.+.+.+|...|..+.|+|+|+++++|+.|+.++|||+..|+
T Consensus 109 tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk 187 (825)
T KOG0267|consen 109 TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK 187 (825)
T ss_pred hccccCcceeeeccceEEeccccccccceehhhhccC-ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc
Confidence 99999999999995 788999999999999999776 688999999999999999999999999999999999999999
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-CCCEEEEEECCCCCeEEEEEecC
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~-~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
.+..|..|...|..+.|+|.. .|+++|| .|++++|||+++-+.+...+. -..|.++.|++++..+++ |..
T Consensus 188 ~~~ef~~~e~~v~sle~hp~e-~Lla~Gs--~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~--G~q 258 (825)
T KOG0267|consen 188 LSKEFKSHEGKVQSLEFHPLE-VLLAPGS--SDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLS--GEQ 258 (825)
T ss_pred cccccccccccccccccCchh-hhhccCC--CCceeeeeccceeEEeeccCCccCCceeeeecCCceeeec--Cch
Confidence 999999999999999999985 5888887 999999999999888877663 467999999999998887 643
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-23 Score=201.18 Aligned_cols=235 Identities=20% Similarity=0.326 Sum_probs=205.3
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC-----C-
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-----C- 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~-----~- 240 (415)
|+-+..|-| +++++.|. .|.+.+||+.+........ .|.+.+.+++.+||++.+++|+.|.+|++||..- +
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 778888888 66677774 6899999999999888887 8999999999999999999999999999999631 1
Q ss_pred -eeeEEec-----CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC
Q 014934 241 -KRVRTME-----GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND 312 (415)
Q Consensus 241 -~~~~~l~-----~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d 312 (415)
+.+..+. .-...|.|+.++ +.+|+++--|.++++|-+.+.. ....+.||.-+|.|+..+||+++++||+.|
T Consensus 493 ~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-FflsLYGHkLPV~smDIS~DSklivTgSAD 571 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-FFLSLYGHKLPVLSMDISPDSKLIVTGSAD 571 (888)
T ss_pred cceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-eeeeecccccceeEEeccCCcCeEEeccCC
Confidence 1111111 135679999999 5899999999999999998886 677889999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCe
Q 014934 313 NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNE 391 (415)
Q Consensus 313 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~ 391 (415)
..|+||-+.=|.+-..+-+|...|.++.|.|..+ ++.++| .|+.|+-||-..-++++.++ |...|++++.+|+|.+
T Consensus 572 KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~-~FFt~g--KD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~ 648 (888)
T KOG0306|consen 572 KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH-LFFTCG--KDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSF 648 (888)
T ss_pred CceEEeccccchhhhhhhcccCceeEEEEcccce-eEEEec--CcceEEeechhhhhhheeeccchheeeeeEEcCCCCe
Confidence 9999999999999999999999999999999765 666776 89999999999999998887 7789999999999999
Q ss_pred EEEEEecCCCcEEEEECCC
Q 014934 392 LVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s 410 (415)
+++ ++.|..|++|.-..
T Consensus 649 vvs--~shD~sIRlwE~td 665 (888)
T KOG0306|consen 649 VVS--SSHDKSIRLWERTD 665 (888)
T ss_pred EEe--ccCCceeEeeeccC
Confidence 999 77899999998654
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=189.27 Aligned_cols=231 Identities=20% Similarity=0.361 Sum_probs=195.4
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
-+-+++.|+ +.+||+|. |..|.||+..+.+.++.+. +|.+.|.+++|-.....|.+++.|+.|++|+++....+.++
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl 282 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL 282 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc-ccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH
Confidence 367888888 88999984 6788999999999888876 99999999999988889999999999999999999999999
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
.+|+..|.+|... ...+.+|+.|+++++|++.... ...+.+|.+.+.|++|- +...|++|+.||.|.+|++...+
T Consensus 283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred hCCccceeeechhcccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccC
Confidence 9999999999876 5677778899999999995443 56678899999999997 56689999999999999999999
Q ss_pred eeEEec-cC-----------CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC----cEEEEeeCCCCEEEEEECCC
Q 014934 325 PVLKYC-EH-----------TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN----THLSCMDTGSQVCNLVWSKN 388 (415)
Q Consensus 325 ~~~~~~-~h-----------~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~----~~~~~~~~~~~V~~l~~s~~ 388 (415)
+++... .| ...|++|+..|... |+++|+ .+|+|++|-+..| .++..+...+.|++++|+++
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS--~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~s 436 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGS--WSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNS 436 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCc-eEEecC--CCCceEEEEecCCccccceeeecccccEEEEEEEccC
Confidence 887764 12 22789999999865 999988 8999999999887 45666667788999999999
Q ss_pred CCeEEEEEecCCCcEEEEE
Q 014934 389 VNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~ 407 (415)
|+.++++.| ....+--|.
T Consensus 437 gk~ivagiG-kEhRlGRW~ 454 (479)
T KOG0299|consen 437 GKRIVAGIG-KEHRLGRWW 454 (479)
T ss_pred CCEEEEecc-cccccceee
Confidence 998888654 333443443
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=184.71 Aligned_cols=233 Identities=21% Similarity=0.324 Sum_probs=200.1
Q ss_pred eeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC------CC--
Q 014934 170 LNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA------SR-- 239 (415)
Q Consensus 170 i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~------~~-- 239 (415)
|..++-.. ..++.++ .|.+.+||.++++.+...+. +|.+.|.+|+|++.+.++++++.|++..||.. ..
T Consensus 151 iW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~ 229 (481)
T KOG0300|consen 151 IWHVAADSTQPICGTASADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNN 229 (481)
T ss_pred eeeehhhcCCcceeecccccceeEEeeccccceeeec-ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCC
Confidence 44444444 5566665 57899999999999988887 99999999999999999999999999999951 00
Q ss_pred --------------------------------CeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEE
Q 014934 240 --------------------------------CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVS 285 (415)
Q Consensus 240 --------------------------------~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~ 285 (415)
.-++..+.+|.+.|.+..|- +..+++++.|++..+||+++++ ++.
T Consensus 230 a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-~v~ 308 (481)
T KOG0300|consen 230 APSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE-VVN 308 (481)
T ss_pred CCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc-eec
Confidence 01344567899999999996 7899999999999999999998 789
Q ss_pred EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE
Q 014934 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 286 ~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd 364 (415)
.+.+|..+.+.++-+|..+++++.+.|-+.++||.+.. ..+..|++|+..|+++.|.-+.+ +++|+ .|.+|++||
T Consensus 309 ~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgS--DDrTvKvWd 384 (481)
T KOG0300|consen 309 ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGS--DDRTVKVWD 384 (481)
T ss_pred cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecC--CCceEEEee
Confidence 99999999999999999999999999999999999854 55778999999999999998864 56665 899999999
Q ss_pred CCCC-cEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 365 TTTN-THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 365 ~~t~-~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+++. .++.++.+.+++..++.+..+..++. --++.+|++||+.-
T Consensus 385 LrNMRsplATIRtdS~~NRvavs~g~~iIAi--PhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 385 LRNMRSPLATIRTDSPANRVAVSKGHPIIAI--PHDNRQVRLFDLNG 429 (481)
T ss_pred eccccCcceeeecCCccceeEeecCCceEEe--ccCCceEEEEecCC
Confidence 9875 57889999999999999999998888 45678999999864
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=176.47 Aligned_cols=238 Identities=22% Similarity=0.343 Sum_probs=201.8
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
.+..|+|+. +..||.| .|+++.+|++...+....... +|.+.|-.++|+| ....+++++.|.+|++||+.+++++.
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~ 101 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA 101 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE
Confidence 377899998 7788887 589999999987754333322 7888999999998 56799999999999999999999998
Q ss_pred EecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 245 TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
......+.+. +.|+ +.+++.+++|..|...|.++.. +..-.....++.-++|+-++.+|+.-...|.|.|.....
T Consensus 102 ~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~--~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps 178 (313)
T KOG1407|consen 102 RIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYK--IVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS 178 (313)
T ss_pred EeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccc--eeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccc
Confidence 8876656565 4555 6899999999999999999876 222333556788899998888888777789999999999
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCC
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQN 401 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg 401 (415)
-++++.++.|.....||.|+|+|+ .+|+|+ .|..+.+||+..--++..+. ..-+|..+.|+.+|++|++ |++|.
T Consensus 179 Lkpv~si~AH~snCicI~f~p~Gr-yfA~Gs--ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS--aSEDh 253 (313)
T KOG1407|consen 179 LKPVQSIKAHPSNCICIEFDPDGR-YFATGS--ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS--ASEDH 253 (313)
T ss_pred cccccccccCCcceEEEEECCCCc-eEeecc--ccceeeccChhHhhhheeeccccCceEEEEeccCcceeec--cCccc
Confidence 999999999999999999999998 777877 89999999999888888885 6788999999999999999 88999
Q ss_pred cEEEEECCCCccc
Q 014934 402 QIIVWRYPTMSKV 414 (415)
Q Consensus 402 ~I~vw~~~s~~~l 414 (415)
-|-|=+++++.++
T Consensus 254 ~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 254 FIDIAEVETGDRV 266 (313)
T ss_pred eEEeEecccCCeE
Confidence 9998888888764
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-23 Score=193.40 Aligned_cols=261 Identities=16% Similarity=0.257 Sum_probs=192.7
Q ss_pred CCCCCCCCCceeccCCCCCCCcceeEeecCC-C-cEEEEEcCCeEEEEECCCCCe----EEeEecCCCCCeEEEEEcCCC
Q 014934 147 APRKVPRSPYKILDAPALQDDFYLNLVDWSS-H-NVLAVGLGNCVYLWNACSSKV----TKLCDLGIDDSVCSVGWANRN 220 (415)
Q Consensus 147 ~~r~i~~~p~~~ld~~~l~~~~~i~~l~ws~-~-~~la~~~d~~V~iwd~~~~~~----~~~~~~~~~~~V~~v~~sp~g 220 (415)
....||...+-.|... .-.|..+++.| + +++..+.|..|++||...-.. .+.+.......|.++.|++.|
T Consensus 151 ~~~~IP~shEi~l~hg----tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg 226 (641)
T KOG0772|consen 151 IIKLIPGSHEIQLKHG----TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG 226 (641)
T ss_pred hhhcCCccceEeccCC----ceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC
Confidence 3556777776665432 33588899988 4 455555799999999875321 222222335689999999999
Q ss_pred CeEEEEECCCcEEEEECCCCeeeEEe------------cCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEE
Q 014934 221 THLAVGTSHGKVQIWDASRCKRVRTM------------EGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVS 285 (415)
Q Consensus 221 ~~la~g~~dg~V~iwd~~~~~~~~~l------------~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~ 285 (415)
..|++.+.....+|+|-.-...+... +||...++|.+|+| +.|++++.||++++||+........
T Consensus 227 ~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 227 DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 99988888889999997544333322 48999999999995 6899999999999999987664444
Q ss_pred Eec-----cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC--ceeEEe-ccCCC--cEEEEEEcCCCCcEEEEEcCC
Q 014934 286 KLS-----GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST--QPVLKY-CEHTA--AVKAIAWSPHLHGLLASGGGT 355 (415)
Q Consensus 286 ~~~-----~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~--~~~~~~-~~h~~--~V~~l~~sp~~~~llasggg~ 355 (415)
.+. +..-.++.++|++||++||+|+.||.|.+|+..+. .+...+ ..|.. .|++|.|+++|++|+ +-|
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll-SRg-- 383 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL-SRG-- 383 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh-hcc--
Confidence 433 33457899999999999999999999999997543 233332 46877 899999999998555 444
Q ss_pred CCCeEEEEECCCCc-EEEEee---CCCCEEEEEECCCCCeEEEEEe----cCCCcEEEEECCCCccc
Q 014934 356 ADRCIRFWNTTTNT-HLSCMD---TGSQVCNLVWSKNVNELVSTHG----YSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 356 ~d~~I~iwd~~t~~-~~~~~~---~~~~V~~l~~s~~~~~l~s~~g----~~dg~I~vw~~~s~~~l 414 (415)
.|+++++||++..+ ++.... +...-+.++|||+.+.|++.+. ...|.+.+||-.+++.+
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence 79999999998754 343322 3455678999999999998321 12467999988776543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-23 Score=191.21 Aligned_cols=231 Identities=20% Similarity=0.382 Sum_probs=187.0
Q ss_pred CcEEEEEc-CCeEEEEECCCCC-eEEeE-------------------ecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEE
Q 014934 178 HNVLAVGL-GNCVYLWNACSSK-VTKLC-------------------DLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIW 235 (415)
Q Consensus 178 ~~~la~~~-d~~V~iwd~~~~~-~~~~~-------------------~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iw 235 (415)
+|++|+|. +..|.|||+.--. +...+ ..+|++.|.++.|+.. .+.||+|+.|.+|.+|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 68999994 8899999985311 11111 1157888999999875 4689999999999999
Q ss_pred ECCCCeeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC-CCEEEEEeC
Q 014934 236 DASRCKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD-NRELASGGN 311 (415)
Q Consensus 236 d~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~lasg~~ 311 (415)
|+.++++..++..|...|.++.|+ +.+|++|+.|+++.+.|.|.....-..+ ...+.|-.++|.|. ...++++..
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEecC
Confidence 999999999999999999999999 6899999999999999999654322233 24578999999985 456788889
Q ss_pred CCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC---CCCEEEEEECC
Q 014934 312 DNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSK 387 (415)
Q Consensus 312 dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~---~~~V~~l~~s~ 387 (415)
||+|+-+|+++. +++.++..|.+.|.+|++++...+++++++ .|+.+++|++..........+ -+..++.++.|
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s--~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS--TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDP 428 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc--ccceEEEEeecCCCCcccccccccccceeecccCC
Confidence 999999999976 999999999999999999999999999987 899999999975443222211 23477888899
Q ss_pred CCCeEEEEEecCCCcEEEEECCCCc
Q 014934 388 NVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 388 ~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+-..+++. |+..+.++|||+-+..
T Consensus 429 ~~a~~la~-GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 429 DVAFTLAF-GGEKAVLRVWDIFTNS 452 (463)
T ss_pred CcceEEEe-cCccceEEEeecccCh
Confidence 88777665 6677899999997654
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.5e-24 Score=183.50 Aligned_cols=238 Identities=18% Similarity=0.278 Sum_probs=213.6
Q ss_pred cceeEeecCC----CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 168 FYLNLVDWSS----HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 168 ~~i~~l~ws~----~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
..|..++||| +.+|..+ .|+.-.+-+-++|..+-.+. +|.+.|.+.....+..+.|+++.|=+.++||.-++..
T Consensus 15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaaadftakvw~a~tgde 93 (334)
T KOG0278|consen 15 RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE 93 (334)
T ss_pred cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeee-ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh
Confidence 3466777877 3444444 58888899999999999997 9999999999999999999999999999999999999
Q ss_pred eEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
+..+. |..-|.+++|+ .++|++|+.++.++++|+...+.+...+.+|.+.|..+-|....+.|++...|+.|++||.
T Consensus 94 lhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 94 LHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred hhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence 99887 88999999998 5899999999999999999988788889999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCC
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
+++..++++ .....|+++..+++|+ ++.++ ..+.|.+||..+-..++.++....|.+...+|+...+++ |+.|
T Consensus 173 rTgt~v~sL-~~~s~VtSlEvs~dG~-ilTia---~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVa--Gged 245 (334)
T KOG0278|consen 173 RTGTEVQSL-EFNSPVTSLEVSQDGR-ILTIA---YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVA--GGED 245 (334)
T ss_pred ccCcEEEEE-ecCCCCcceeeccCCC-EEEEe---cCceeEEeccccccceeeccCccccccccccCCCceEEe--cCcc
Confidence 999999998 4567899999999998 55554 468999999999999999999999999999999988888 8999
Q ss_pred CcEEEEECCCCccc
Q 014934 401 NQIIVWRYPTMSKV 414 (415)
Q Consensus 401 g~I~vw~~~s~~~l 414 (415)
..++.|||.+++++
T Consensus 246 ~~~~kfDy~TgeEi 259 (334)
T KOG0278|consen 246 FKVYKFDYNTGEEI 259 (334)
T ss_pred eEEEEEeccCCcee
Confidence 99999999998765
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-23 Score=200.80 Aligned_cols=228 Identities=20% Similarity=0.325 Sum_probs=189.1
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeE------------------------------------ecCCCCCeEEEEEcCCCC
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLC------------------------------------DLGIDDSVCSVGWANRNT 221 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~------------------------------------~~~~~~~V~~v~~sp~g~ 221 (415)
+-++++++|++|++|++..+.-..++ ..+....+.+++.+|+|+
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 45777789999999998762111110 012345799999999999
Q ss_pred eEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee-----CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEE
Q 014934 222 HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS-----SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCG 296 (415)
Q Consensus 222 ~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~-----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 296 (415)
+||+|..-|.++|||+...+....++.|...|.|+.++ ..+|+++++|+.|.++|+...-.++.++.+|...|++
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs 552 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS 552 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence 99999999999999999999899999999999999998 2689999999999999997665556666666666665
Q ss_pred EEE-------------------------------------------------eCCCCEEEEEeCCCcEEEEECCCCceeE
Q 014934 297 LKW-------------------------------------------------SYDNRELASGGNDNRLFVWNQHSTQPVL 327 (415)
Q Consensus 297 l~~-------------------------------------------------spdg~~lasg~~dg~I~iwd~~~~~~~~ 327 (415)
++| .|..+++++++.|..|+|||+.+++...
T Consensus 553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k 632 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK 632 (1080)
T ss_pred EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence 554 4445688999999999999999999999
Q ss_pred Eecc---CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcE
Q 014934 328 KYCE---HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (415)
Q Consensus 328 ~~~~---h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I 403 (415)
.|++ |.+....+...|.|-++..++ .|+++.|+|..+|+++.... |...|+++.|.+|-+.|++. +.||.|
T Consensus 633 ~FKgs~~~eG~lIKv~lDPSgiY~atSc---sdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISv--sgDgCI 707 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDPSGIYLATSC---SDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISV--SGDGCI 707 (1080)
T ss_pred eecccccCCCceEEEEECCCccEEEEee---cCCceEEEEeccchhhhhhcCcchheeeeeecccchhheee--cCCceE
Confidence 8874 677888899999998666666 59999999999999987764 66779999999999999995 569999
Q ss_pred EEEECCC
Q 014934 404 IVWRYPT 410 (415)
Q Consensus 404 ~vw~~~s 410 (415)
.||+++.
T Consensus 708 FvW~lp~ 714 (1080)
T KOG1408|consen 708 FVWKLPL 714 (1080)
T ss_pred EEEECch
Confidence 9999985
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-21 Score=165.81 Aligned_cols=239 Identities=20% Similarity=0.276 Sum_probs=191.5
Q ss_pred CCCCcceeEeecCC-CcEEEEEcC-CeEEEEEC------CCCC-----e-EEeE--ecCCCCCeEEEEEcCCCCeEEEEE
Q 014934 164 LQDDFYLNLVDWSS-HNVLAVGLG-NCVYLWNA------CSSK-----V-TKLC--DLGIDDSVCSVGWANRNTHLAVGT 227 (415)
Q Consensus 164 l~~~~~i~~l~ws~-~~~la~~~d-~~V~iwd~------~~~~-----~-~~~~--~~~~~~~V~~v~~sp~g~~la~g~ 227 (415)
+.|...|..++|+| +.+.|+|++ .+.+|.-. ..+. . ..++ ...|.+.|.|++|+|+|.+||+|+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 45666799999999 889999975 45555422 1111 0 1111 226789999999999999999999
Q ss_pred CCCcEEEEECCCCe-----eeEEecCCCccEEEEEee------CCEEEEEe-CCCcEEEEECCCCCccEEEeccccCCeE
Q 014934 228 SHGKVQIWDASRCK-----RVRTMEGHRLRVGALAWS------SSLLSSGS-RDKSILQRDIRAQEDFVSKLSGHKSEVC 295 (415)
Q Consensus 228 ~dg~V~iwd~~~~~-----~~~~l~~h~~~V~~l~~~------~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 295 (415)
.|.+|++.-..... .-..+..|.+.|..++|- +.+|++++ .|..|++-|...+. ..+.+.+|.+.|.
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~sghtghil 187 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHALSGHTGHIL 187 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceeecCCcccEE
Confidence 99999997664322 223567799999999995 35666654 57788888998887 5788999999998
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEecc-------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC
Q 014934 296 GLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE-------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (415)
Q Consensus 296 ~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~ 368 (415)
++- +=+|-+|++|+.|.+|+.||++-..++..+.. ...+|.+++..|.|+ ||++|. .|....+||++.+
T Consensus 188 aly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~--~dssc~lydirg~ 263 (350)
T KOG0641|consen 188 ALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGH--ADSSCMLYDIRGG 263 (350)
T ss_pred EEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeecc--CCCceEEEEeeCC
Confidence 873 33688999999999999999998888777642 236799999999997 999987 8999999999999
Q ss_pred cEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 369 THLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 369 ~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
..++.+. |...|.++.|+|...+|++ ++-|..|++-|+.
T Consensus 264 r~iq~f~phsadir~vrfsp~a~yllt--~syd~~ikltdlq 303 (350)
T KOG0641|consen 264 RMIQRFHPHSADIRCVRFSPGAHYLLT--CSYDMKIKLTDLQ 303 (350)
T ss_pred ceeeeeCCCccceeEEEeCCCceEEEE--ecccceEEEeecc
Confidence 9999986 6788999999999999999 7789999998875
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-23 Score=183.61 Aligned_cols=236 Identities=18% Similarity=0.295 Sum_probs=193.1
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
.|++++|+| ..+|+.| .|++|+++|.......+.+.. .....|.++.|+|.|.+|++|+...++++||+.+.++...
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 489999999 7788877 589999999876544333322 4467899999999999999999999999999999887665
Q ss_pred e---cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEe-cccc-CCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 014934 246 M---EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKL-SGHK-SEVCGLKWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 246 l---~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~h~-~~V~~l~~spdg~~lasg~~dg~I~iw 318 (415)
- ..|.+.|+++.++ +++.++|+.||.|++||=-+.. ++..+ .+|. .+||+..|..+|+++++.|.|..+++|
T Consensus 254 anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r-Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR-CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLW 332 (430)
T ss_pred cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH-HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeee
Confidence 4 3689999999998 6899999999999999987776 44443 4564 579999999999999999999999999
Q ss_pred ECCCCceeEEeccCC--C---cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE--EeeCCCCEEEEEECCCCCe
Q 014934 319 NQHSTQPVLKYCEHT--A---AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS--CMDTGSQVCNLVWSKNVNE 391 (415)
Q Consensus 319 d~~~~~~~~~~~~h~--~---~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~--~~~~~~~V~~l~~s~~~~~ 391 (415)
.+.+++++..+.+-. + .-+...|+....++|.--. ..+.+.-||.+++..+. .+.|.+.+..+.-||.+..
T Consensus 333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE--as~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE--ASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPA 410 (430)
T ss_pred eecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc--ccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCc
Confidence 999999999987531 1 1234567766666666543 57889999999987654 4568899999999999999
Q ss_pred EEEEEecCCCcEEEEECC
Q 014934 392 LVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~ 409 (415)
+++ ++.|-.+++|--.
T Consensus 411 FmT--csdD~raRFWyrr 426 (430)
T KOG0640|consen 411 FMT--CSDDFRARFWYRR 426 (430)
T ss_pred eee--ecccceeeeeeec
Confidence 998 7789999999643
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-22 Score=173.55 Aligned_cols=201 Identities=17% Similarity=0.285 Sum_probs=177.3
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (415)
+|+.+++-|.++.+|.+|.+++.|.++.+|-..+|+.+.++.+|.+.|+|++.+ ...+++|+.|.++++||+.+++.
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~- 86 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ- 86 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE-
Confidence 899999999999999999999999999999999999999999999999999876 68999999999999999999983
Q ss_pred EEEeccccCCeEEEEEeCCCCEEEEEeC-----CCcEEEEECC-------CCceeEEeccCCCcEEEEEEcCCCCcEEEE
Q 014934 284 VSKLSGHKSEVCGLKWSYDNRELASGGN-----DNRLFVWNQH-------STQPVLKYCEHTAAVKAIAWSPHLHGLLAS 351 (415)
Q Consensus 284 ~~~~~~h~~~V~~l~~spdg~~lasg~~-----dg~I~iwd~~-------~~~~~~~~~~h~~~V~~l~~sp~~~~llas 351 (415)
+..++ ...+|..+.|+++|++++.... .+.|.++|++ +.+++.++..+...++.+.|.|-+. .+++
T Consensus 87 la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~-~ii~ 164 (327)
T KOG0643|consen 87 LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE-TIIA 164 (327)
T ss_pred EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC-EEEE
Confidence 55554 4578999999999999877643 4679999998 4567888888999999999999998 5555
Q ss_pred EcCCCCCeEEEEECCCCcEEEEe--eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 352 GGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 352 ggg~~d~~I~iwd~~t~~~~~~~--~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
|. +||.|.+||+++|+.+..- .|.+.|+.++++++..++++ |+.|.+-++||+.+++.
T Consensus 165 Gh--e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT--~s~Dttakl~D~~tl~v 224 (327)
T KOG0643|consen 165 GH--EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT--GSKDTTAKLVDVRTLEV 224 (327)
T ss_pred ec--CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEe--cccCccceeeeccceee
Confidence 65 8999999999998665443 27789999999999999999 88999999999998764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-22 Score=197.78 Aligned_cols=235 Identities=18% Similarity=0.286 Sum_probs=192.8
Q ss_pred ceeEeecCC-CcEEEE-EcCCeEEEEECCCC-CeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSS-HNVLAV-GLGNCVYLWNACSS-KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~-~~d~~V~iwd~~~~-~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
..+.|+|.+ +.+|.+ +.|+.|++|+.... +....+. .+...|.+++. .+.+|++|+.+++|.+|.+..++.-..
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~i 91 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID-ISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTI 91 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh-ccCceeEEEee--cccceEEeeccceEEEeeCCCCCccce
Confidence 367888988 555554 57899999997665 3333332 25567777665 455999999999999999988876666
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+....-++.+++++ +.+++.||.|-.|++.++.... ....+.+|.++|.+|.|+|.+++||+.+.||.|+|||+.++
T Consensus 92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence 66667788899998 5799999999999999998877 47788999999999999999999999999999999999998
Q ss_pred ceeEEecc--------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee---CCCCEEEEEECCCCCeE
Q 014934 324 QPVLKYCE--------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---TGSQVCNLVWSKNVNEL 392 (415)
Q Consensus 324 ~~~~~~~~--------h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~---~~~~V~~l~~s~~~~~l 392 (415)
.....+.+ ....+..++|+|++..+++.+ .|++|++|+..+......+. +.+.++.++|+|+|.||
T Consensus 171 ~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 171 ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred hhhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 77666543 134567899999987787777 59999999999998877764 33459999999999999
Q ss_pred EEEEecCCCcEEEEECCCCc
Q 014934 393 VSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 393 ~s~~g~~dg~I~vw~~~s~~ 412 (415)
++ ++.+|+|.|||+.+++
T Consensus 248 AA--s~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 248 AA--STLDGQILVWNVDTHE 265 (933)
T ss_pred ee--eccCCcEEEEecccch
Confidence 99 8899999999998643
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=175.88 Aligned_cols=231 Identities=15% Similarity=0.212 Sum_probs=184.7
Q ss_pred ceeEeecCCCcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCC--eEEEEECCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT--HLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~--~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
.|++++.+. .++|.| .|.+|+|||+........+. .|.+.|+++.|.+.-. +|++|+.||.|.+|+.....++.+
T Consensus 45 sitavAVs~-~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s 122 (362)
T KOG0294|consen 45 SITALAVSG-PYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS 122 (362)
T ss_pred ceeEEEecc-eeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee
Confidence 588888774 445555 68999999998877666654 7899999999998765 899999999999999999999999
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+++|.+.|+.++.+ +.+.++.+.|+.++.||+-.+..-...-..+ .-..+.|+|.|.+|+.++.++ |-||.+.+.
T Consensus 123 lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A 199 (362)
T KOG0294|consen 123 LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGRNK-IDIYQLDNA 199 (362)
T ss_pred ecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEeccE-EEEEecccH
Confidence 99999999999998 4788899999999999998776322221223 344499999999999988764 999999888
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEE--CCCCCeEEEEEecCC
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVW--SKNVNELVSTHGYSQ 400 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~--s~~~~~l~s~~g~~d 400 (415)
+....+.. ...+.++.|-.. ..|++|+ .|+.|++||...+.++..+. |...|-.+.+ .|++.+|++ .++|
T Consensus 200 ~v~~~i~~-~~r~l~~~~l~~--~~L~vG~--d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT--aSSD 272 (362)
T KOG0294|consen 200 SVFREIEN-PKRILCATFLDG--SELLVGG--DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVT--ASSD 272 (362)
T ss_pred hHhhhhhc-cccceeeeecCC--ceEEEec--CCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEE--eccC
Confidence 76665533 355667766644 3566665 79999999999988887775 7788988874 456777777 6789
Q ss_pred CcEEEEECCCC
Q 014934 401 NQIIVWRYPTM 411 (415)
Q Consensus 401 g~I~vw~~~s~ 411 (415)
|.|+|||+..-
T Consensus 273 G~I~vWd~~~~ 283 (362)
T KOG0294|consen 273 GFIKVWDIDME 283 (362)
T ss_pred ceEEEEEcccc
Confidence 99999998754
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-21 Score=173.06 Aligned_cols=232 Identities=15% Similarity=0.258 Sum_probs=189.0
Q ss_pred eeEeecC--CCcEEEEEc--CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 170 LNLVDWS--SHNVLAVGL--GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 170 i~~l~ws--~~~~la~~~--d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
+.++.|- +..++.++. |.+|+..++.+.+.++.+. +|...|.+++.+|-+..+++++.|++|++||++..++...
T Consensus 59 ~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~ 137 (311)
T KOG1446|consen 59 VDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL 137 (311)
T ss_pred ccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE
Confidence 4444543 356666664 7899999999999999987 9999999999999999999999999999999998888877
Q ss_pred ecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCC-ccEEEec---cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 246 MEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQE-DFVSKLS---GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 246 l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~---~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
+.....+|.+..-.|-+++++...+.|++||+|... .+...+. +-..+...|.|+|||++|+.+...+.+++.|.-
T Consensus 138 l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 138 LNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF 217 (311)
T ss_pred EecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc
Confidence 765555565554446788888877799999999763 2333333 346789999999999999999999999999999
Q ss_pred CCceeEEeccCCCcE---EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC--CCCEEEEEECCCCCeEEEEE
Q 014934 322 STQPVLKYCEHTAAV---KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--GSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V---~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~--~~~V~~l~~s~~~~~l~s~~ 396 (415)
+|.....+.++...- ...+|.|+++ ++.+|+ .||+|.+|++++|..+..+.. ...+.++.|+|....+++
T Consensus 218 ~G~~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs--~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~s-- 292 (311)
T KOG1446|consen 218 DGTVKSTFSGYPNAGNLPLSATFTPDSK-FVLSGS--DDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVS-- 292 (311)
T ss_pred CCcEeeeEeeccCCCCcceeEEECCCCc-EEEEec--CCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeee--
Confidence 999999998776543 5788999998 555554 799999999999999988874 678999999999888877
Q ss_pred ecCCCcEEEEECC
Q 014934 397 GYSQNQIIVWRYP 409 (415)
Q Consensus 397 g~~dg~I~vw~~~ 409 (415)
+ +..+.+|=..
T Consensus 293 a--~s~l~fw~p~ 303 (311)
T KOG1446|consen 293 A--SSNLVFWLPD 303 (311)
T ss_pred c--CceEEEEecc
Confidence 3 4478888654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=190.33 Aligned_cols=238 Identities=18% Similarity=0.307 Sum_probs=195.3
Q ss_pred eeEeecCCCcEEEEE---cCCeEEEEECCC--CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 170 LNLVDWSSHNVLAVG---LGNCVYLWNACS--SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 170 i~~l~ws~~~~la~~---~d~~V~iwd~~~--~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
++.+.|+..++|+++ .|..|.+|.-.. +++..+-. ...+.-.||+......++++|+..|.|+|||++...+.+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeec-cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 678899996655554 356788886433 23333322 223355566665566899999999999999999777888
Q ss_pred EecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec-cccCCeEEEEEeCCCCE-EEEEeCCCcEEEEEC
Q 014934 245 TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS-GHKSEVCGLKWSYDNRE-LASGGNDNRLFVWNQ 320 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~-lasg~~dg~I~iwd~ 320 (415)
.+++|...|+++.++ ..+|++++..|.|.+..+.++.. ...+. +..+.|.-+.++|..+. |.+++.+|.|.+||+
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 899999999999998 68999999999999999988764 23333 33566779999997776 456899999999999
Q ss_pred CCCceeEEec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecC
Q 014934 321 HSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 321 ~~~~~~~~~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
....+++.+. .|.++...|+|+|.+..||++-| .|+.|.+||+...+...++....+...++|+++|.+|++ |.+
T Consensus 195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG--~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~a--G~s 270 (673)
T KOG4378|consen 195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG--YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCA--GNS 270 (673)
T ss_pred cCCCcccchhhhccCCcCcceecCCccceEEEec--ccceEEEeecccccccceeeecCCcceeeecCCceEEEe--ecC
Confidence 9888887664 69999999999999999999998 999999999999888888888899999999999999999 899
Q ss_pred CCcEEEEECCCCcc
Q 014934 400 QNQIIVWRYPTMSK 413 (415)
Q Consensus 400 dg~I~vw~~~s~~~ 413 (415)
.|.|..||+...++
T Consensus 271 ~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 271 KGELIAYDMRSTKA 284 (673)
T ss_pred CceEEEEecccCCC
Confidence 99999999987664
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-22 Score=183.34 Aligned_cols=258 Identities=16% Similarity=0.257 Sum_probs=205.5
Q ss_pred CCCCCCCCCCCCceeccCCCCCCCcceeEeecCC-CcEEEEEc-CCeEEEEECCCCCe---EEeEecCCCCCeEEEEEcC
Q 014934 144 PVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKV---TKLCDLGIDDSVCSVGWAN 218 (415)
Q Consensus 144 ~~k~~r~i~~~p~~~ld~~~l~~~~~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~---~~~~~~~~~~~V~~v~~sp 218 (415)
-....+++|....++|.... + .|.-+.||+ +.+||+++ |.+..||.+..... ...+. +|..+|..+.|||
T Consensus 205 h~c~~~qip~qt~qil~~ht--d--EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSP 279 (519)
T KOG0293|consen 205 HFCGRLQIPSQTWQILQDHT--D--EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSP 279 (519)
T ss_pred cccCcccCCchhhhhHhhCC--C--cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECC
Confidence 34556788888888887643 3 377899999 89999985 78899998755433 33333 8999999999999
Q ss_pred CCCeEEEEECCCcEEEEECCCCeeeEEec-CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccc-cCCe
Q 014934 219 RNTHLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGH-KSEV 294 (415)
Q Consensus 219 ~g~~la~g~~dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V 294 (415)
|.++|++|+.+..+.+||+.++.....+. +|...+.+.+|. +..+++|+.|++|..||+.... ....++- ...|
T Consensus 280 DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v 357 (519)
T KOG0293|consen 280 DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKV 357 (519)
T ss_pred CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhccccccccee
Confidence 99999999999999999999999888775 356789999998 4689999999999999998654 3344433 2569
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 295 CGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 295 ~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
.+++.++||+++++.+.|..|++++..+....... ....+|+++..+.++++.|+.- .+..|++||+...+.+..+
T Consensus 358 ~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL---~~qei~LWDl~e~~lv~kY 433 (519)
T KOG0293|consen 358 HDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNL---QDQEIHLWDLEENKLVRKY 433 (519)
T ss_pred EEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEc---ccCeeEEeecchhhHHHHh
Confidence 99999999999999999999999999876655444 3456899999999999777765 6999999999977766665
Q ss_pred eC---CCCEEEEEECCCC-CeEEEEEecCCCcEEEEECCCCccc
Q 014934 375 DT---GSQVCNLVWSKNV-NELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 375 ~~---~~~V~~l~~s~~~-~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
.. +..+..-+|.-.. .++++ |++|++|+||+-.+++.+
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaS--GSED~kvyIWhr~sgkll 475 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIAS--GSEDSKVYIWHRISGKLL 475 (519)
T ss_pred hcccccceEEEeccCCCCcceEEe--cCCCceEEEEEccCCcee
Confidence 42 3446666776654 56666 999999999999887654
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-22 Score=181.04 Aligned_cols=234 Identities=26% Similarity=0.491 Sum_probs=175.3
Q ss_pred eeEeecCC--CcEEEEE--cCCeEEEEECCC--------------CCeEEeEec-CCCCCeEEEEEcCCC-CeEEEEECC
Q 014934 170 LNLVDWSS--HNVLAVG--LGNCVYLWNACS--------------SKVTKLCDL-GIDDSVCSVGWANRN-THLAVGTSH 229 (415)
Q Consensus 170 i~~l~ws~--~~~la~~--~d~~V~iwd~~~--------------~~~~~~~~~-~~~~~V~~v~~sp~g-~~la~g~~d 229 (415)
+|-+.-++ +..|+++ ..|.|+||++.. .+...++.+ +|...=++++|||-. ..|++|..-
T Consensus 154 ~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~ 233 (440)
T KOG0302|consen 154 INRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCV 233 (440)
T ss_pred cceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccc
Confidence 44444433 4455555 358999999742 111222333 677888999999932 358888888
Q ss_pred CcEEEEECCCCeee---EEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCc-cEEEeccccCCeEEEEEeCC
Q 014934 230 GKVQIWDASRCKRV---RTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQED-FVSKLSGHKSEVCGLKWSYD 302 (415)
Q Consensus 230 g~V~iwd~~~~~~~---~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spd 302 (415)
+.|++|...++.-. ..+.+|...|-.|+|+| ..|++||.||+|+|||+|.+.+ .....++|.+.|+-|.|+..
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~ 313 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRR 313 (440)
T ss_pred cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCC
Confidence 89999999886422 34567999999999984 7999999999999999998732 23344789999999999998
Q ss_pred CCEEEEEeCCCcEEEEECCC---CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE---------
Q 014934 303 NRELASGGNDNRLFVWNQHS---TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH--------- 370 (415)
Q Consensus 303 g~~lasg~~dg~I~iwd~~~---~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~--------- 370 (415)
..+||+|+.||+++|||+++ ++++..|+-|.++|++|.|+|.....++++| .|..|.+||+....-
T Consensus 314 ~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg--~D~QitiWDlsvE~D~ee~~~~a~ 391 (440)
T KOG0302|consen 314 EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG--EDNQITIWDLSVEADEEEIDQEAA 391 (440)
T ss_pred cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc--CCCcEEEEEeeccCChhhhccccc
Confidence 88999999999999999975 5789999999999999999999888888887 899999999964221
Q ss_pred ---------EEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 371 ---------LSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 371 ---------~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
+--+. ....|-.+.|+++-.-++++++ .|| +.||.
T Consensus 392 ~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa-~dG-fnVfk 436 (440)
T KOG0302|consen 392 EGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA-IDG-FNVFK 436 (440)
T ss_pred cchhcCCceeEEEecchhHhhhheeccCCCCeEEEec-ccc-eeEEE
Confidence 11111 2345778999998665555433 343 55664
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-22 Score=191.89 Aligned_cols=221 Identities=21% Similarity=0.335 Sum_probs=188.8
Q ss_pred eecCC---CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCC
Q 014934 173 VDWSS---HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 173 l~ws~---~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h 249 (415)
+++-+ +.++..+.|.+|.+|...+......+. +|...|+|+....++. +++|+.|.++++|-.. ++...+.+|
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH 139 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGH 139 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCchhhhh-ccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCc
Confidence 55554 345666679999999999988877775 9999999999988888 9999999999999764 556669999
Q ss_pred CccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 014934 250 RLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 250 ~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~ 328 (415)
+..|++++.- .+.+++|+.|++|++|.- ...+.++.+|..-|.++++-+++ .|+++++||.|+.|++ ++..+.+
T Consensus 140 ~asVWAv~~l~e~~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~ 214 (745)
T KOG0301|consen 140 TASVWAVASLPENTYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLE 214 (745)
T ss_pred chheeeeeecCCCcEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeee
Confidence 9999999876 479999999999999975 33678899999999999999754 6889999999999999 7889999
Q ss_pred eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCC-CEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 329 YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS-QVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 329 ~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~-~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
+.+|+..|.++.....+. +++++| +|++++||+.. ++.+.+.+.. .|+++.+-++|..+ + |++||.|+||.
T Consensus 215 ~~ghtn~vYsis~~~~~~-~Ivs~g--EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIv-v--g~SDG~VrVfT 286 (745)
T KOG0301|consen 215 MHGHTNFVYSISMALSDG-LIVSTG--EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIV-V--GGSDGRVRVFT 286 (745)
T ss_pred eeccceEEEEEEecCCCC-eEEEec--CCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEE-E--eccCceEEEEE
Confidence 999999999999666554 788887 99999999987 8888888765 79999999999854 4 67899999998
Q ss_pred CCC
Q 014934 408 YPT 410 (415)
Q Consensus 408 ~~s 410 (415)
...
T Consensus 287 ~~k 289 (745)
T KOG0301|consen 287 VDK 289 (745)
T ss_pred ecc
Confidence 763
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-20 Score=177.06 Aligned_cols=236 Identities=12% Similarity=0.078 Sum_probs=177.7
Q ss_pred eeEeecCC-CcEE-EEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCCcEEEEECCCCeeeEE
Q 014934 170 LNLVDWSS-HNVL-AVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 170 i~~l~ws~-~~~l-a~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg~V~iwd~~~~~~~~~ 245 (415)
+..++|++ +..+ +++ .++.|++||..+++....+.. ...+..++|+|+|+.++++ ..++.|.+||+.+.+.+..
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS--GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC--CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 34688998 5544 444 468999999999887665542 2346788999999977665 4589999999999887777
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCC-cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEE-eCCCcEEEEECC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDK-SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASG-GNDNRLFVWNQH 321 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg-~~dg~I~iwd~~ 321 (415)
+.. ...+.+++|+ +.++++++.++ .+.+||.++... ..... ....+.+++|+|++++|+++ ..++.|++||+.
T Consensus 111 ~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~ 187 (300)
T TIGR03866 111 IPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA 187 (300)
T ss_pred eeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC
Confidence 763 3346778887 57888887765 467789887652 33222 23356789999999988654 568999999999
Q ss_pred CCceeEEeccCC-----C--cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 322 STQPVLKYCEHT-----A--AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 322 ~~~~~~~~~~h~-----~--~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
+++.+..+..+. . ....++|+|+++.++++.+ .++.|.+||+.+++.+..+.++..+.++.|+|+|++|++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 188 TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG--PANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred cceeeeeeeecccccccccCCccceEECCCCCEEEEEcC--CCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEE
Confidence 988776654321 1 2356899999997666654 467899999999998877767778999999999999987
Q ss_pred EEecCCCcEEEEECCCCcc
Q 014934 395 THGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s~~~ 413 (415)
+ +..+|.|.+||+.+++.
T Consensus 266 ~-~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 266 T-NGVSNDVSVIDVAALKV 283 (300)
T ss_pred E-cCCCCeEEEEECCCCcE
Confidence 4 34689999999998764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=190.27 Aligned_cols=245 Identities=20% Similarity=0.267 Sum_probs=199.2
Q ss_pred CCCCCcceeEeecCC-CcEEEEEcCCeEEEEECCCCC---eEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC
Q 014934 163 ALQDDFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSK---VTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA 237 (415)
Q Consensus 163 ~l~~~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~---~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~ 237 (415)
.|.....|..+..|. ...+.+|..++|+|||+.... .+..+.. .....|.++.+.|||+.|++|+.-.+|.|||+
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 344555677788887 788888889999999986532 1222221 34678999999999999999999999999999
Q ss_pred CCCee--eEEecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC
Q 014934 238 SRCKR--VRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN 313 (415)
Q Consensus 238 ~~~~~--~~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg 313 (415)
..... ...+......+.+++.++ +..+++..||.|.|||+++.. .+..+++|...+.||.+++||..|-+|+-|+
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 76543 233333344566677774 788999999999999999887 7899999999999999999999999999999
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEE
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~ 393 (415)
+|+.||+++++.+++. .....|.++.+||.+.++++ |.+.+.+.+-.+...+..+.-.|.+-|.++.|.+.|++++
T Consensus 574 tvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlav---GMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAV---GMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred ceeehhhhhhhhhhhh-hhhhhheecccCCCccceee---ecccCcEEEEecCCccceeecccccEEEEEEecccCceee
Confidence 9999999999877665 45678999999999997766 4488999998887666655556889999999999999999
Q ss_pred EEEecCCCcEEEEECCCCccc
Q 014934 394 STHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s~~~l 414 (415)
++ +.|+-+-.|..+-+..|
T Consensus 650 St--GkDnlLnawrtPyGasi 668 (705)
T KOG0639|consen 650 ST--GKDNLLNAWRTPYGASI 668 (705)
T ss_pred ec--CchhhhhhccCccccce
Confidence 95 58999999999876654
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=176.36 Aligned_cols=201 Identities=20% Similarity=0.281 Sum_probs=178.3
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (415)
.|.+.|.+|+.+|+.+++|+|+.|....||++.++.....+.+|...|+++.|+ +.+|++|+.+|.|.+|+..++..
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~- 140 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE- 140 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce-
Confidence 799999999999999999999999999999999999999999999999999998 78999999999999999998873
Q ss_pred EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 284 ~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
...+...-..|.=|.|+|-+..|+.|+.||.|.+|.+.++...+.+.+|+.++++=.|.|+|+ .++++. .|++|++|
T Consensus 141 ~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK-r~~tgy--~dgti~~W 217 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK-RILTGY--DDGTIIVW 217 (399)
T ss_pred EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc-eEEEEe--cCceEEEE
Confidence 455555556788899999999999999999999999999888899999999999999999998 555554 79999999
Q ss_pred ECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 364 NTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 364 d~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
|..+++++..+. .+....++.++..+..++. |..++.+++-+-.+++
T Consensus 218 n~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~--g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 218 NPKTGQPLHKITQAEGLELPCISLNLAGSTLTK--GNSEGVACGVNNGSGK 266 (399)
T ss_pred ecCCCceeEEecccccCcCCccccccccceeEe--ccCCccEEEEccccce
Confidence 999999998886 3456778888888888877 7788888877766654
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-22 Score=175.31 Aligned_cols=202 Identities=21% Similarity=0.338 Sum_probs=167.8
Q ss_pred CCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCCe----------eeEE-----ecCCCccEEEEEeeC---CEEEEE
Q 014934 206 GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCK----------RVRT-----MEGHRLRVGALAWSS---SLLSSG 266 (415)
Q Consensus 206 ~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~~----------~~~~-----l~~h~~~V~~l~~~~---~~l~sg 266 (415)
.|.+.|.++.+.+ .|+++++|+.||.|.+||++... .+.. -.+|.-.|..+.|-| ..+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 6789999999987 68999999999999999997532 1111 136888999999974 799999
Q ss_pred eCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC---CCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcC
Q 014934 267 SRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD---NRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343 (415)
Q Consensus 267 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd---g~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp 343 (415)
+.|.++++||..+.+. ...+ ...+.|.+-+|+|- .-++|+|..|-+|++-|+.+|...+.+.+|...|.++.|+|
T Consensus 121 SFDhtlKVWDtnTlQ~-a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQE-AVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred cccceEEEeeccccee-eEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999988763 3233 34567888888883 45788899999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCCCeEEEEECCCC-cEEEEee---------------CCCCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 344 HLHGLLASGGGTADRCIRFWNTTTN-THLSCMD---------------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 344 ~~~~llasggg~~d~~I~iwd~~t~-~~~~~~~---------------~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
...++|++|+ .||.|++||++.. -++..++ +.+.|.+++|+.++.++++ .+.|..+++|+
T Consensus 199 ~~e~vLatgs--aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~--~gtd~r~r~wn 274 (397)
T KOG4283|consen 199 SSEWVLATGS--ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS--CGTDDRIRVWN 274 (397)
T ss_pred CceeEEEecC--CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh--ccCccceEEee
Confidence 9999999998 9999999999864 3333332 4467999999999999999 45788999999
Q ss_pred CCCCcc
Q 014934 408 YPTMSK 413 (415)
Q Consensus 408 ~~s~~~ 413 (415)
..+++.
T Consensus 275 ~~~G~n 280 (397)
T KOG4283|consen 275 MESGRN 280 (397)
T ss_pred cccCcc
Confidence 988753
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-22 Score=188.68 Aligned_cols=247 Identities=18% Similarity=0.264 Sum_probs=203.5
Q ss_pred CCCCceeccCCCCCCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecC-CCCCeEEEEEcCCCCeEEEEEC
Q 014934 152 PRSPYKILDAPALQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLG-IDDSVCSVGWANRNTHLAVGTS 228 (415)
Q Consensus 152 ~~~p~~~ld~~~l~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~-~~~~V~~v~~sp~g~~la~g~~ 228 (415)
.+.|.--||. +..+-||..+...+ ++.|.+| ...+|.|||+.........++. ..-.+.+++.+||.+..++++.
T Consensus 452 ~k~PvsqLdc--l~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs 529 (705)
T KOG0639|consen 452 NKSPVSQLDC--LNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS 529 (705)
T ss_pred CCCccccccc--cCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc
Confidence 3455555554 45566788877777 6666665 5579999999876543333332 2346788999999999999999
Q ss_pred CCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEE
Q 014934 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306 (415)
Q Consensus 229 dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 306 (415)
||.|.|||+.+...++.|.+|...+.||..+ +..|.+|+-|.+|+.||++.+.++.. ......|.+|..+|.+.+|
T Consensus 530 dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq--hdF~SQIfSLg~cP~~dWl 607 (705)
T KOG0639|consen 530 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ--HDFSSQIFSLGYCPTGDWL 607 (705)
T ss_pred CCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh--hhhhhhheecccCCCccce
Confidence 9999999999999999999999999999998 78999999999999999998874322 2345789999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEEC
Q 014934 307 ASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWS 386 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s 386 (415)
|+|-.++.+.|-..... ..+.+..|..-|.++.|.+.|++++.+| .|..+..|.+.-|..+...+..+.|.++..|
T Consensus 608 avGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStG---kDnlLnawrtPyGasiFqskE~SsVlsCDIS 683 (705)
T KOG0639|consen 608 AVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTG---KDNLLNAWRTPYGASIFQSKESSSVLSCDIS 683 (705)
T ss_pred eeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecC---chhhhhhccCccccceeeccccCcceeeeec
Confidence 99999999988886544 3456667999999999999999665555 7999999999999999888899999999999
Q ss_pred CCCCeEEEEEecCCCcEEEEEC
Q 014934 387 KNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 387 ~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
.|.+++++ |+.|..-.||.+
T Consensus 684 ~ddkyIVT--GSGdkkATVYeV 703 (705)
T KOG0639|consen 684 FDDKYIVT--GSGDKKATVYEV 703 (705)
T ss_pred cCceEEEe--cCCCcceEEEEE
Confidence 99999999 777878888764
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=208.32 Aligned_cols=243 Identities=22% Similarity=0.385 Sum_probs=193.8
Q ss_pred CCCcceeEeecCC-C----cEEEEE-cCCeEEEEECCC---CC---eEEeEecCCCCCeEEEEEcCCC-CeEEEEECCCc
Q 014934 165 QDDFYLNLVDWSS-H----NVLAVG-LGNCVYLWNACS---SK---VTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGK 231 (415)
Q Consensus 165 ~~~~~i~~l~ws~-~----~~la~~-~d~~V~iwd~~~---~~---~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~dg~ 231 (415)
..+...+.++|++ + .+||.| .||.|.+||... +. ++..+. .|++.|..+.|++.. +.||+|+.+|.
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADDGE 140 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCCCc
Confidence 4455677899988 2 368887 479999999865 22 222222 789999999999965 59999999999
Q ss_pred EEEEECCCCeeeEEec--CCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEecccc--CCeEEEEEeCCC-
Q 014934 232 VQIWDASRCKRVRTME--GHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK--SEVCGLKWSYDN- 303 (415)
Q Consensus 232 V~iwd~~~~~~~~~l~--~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~--~~V~~l~~spdg- 303 (415)
|.|||+...+.-.++. .....|.+++|+ .++|++++.+|.+.|||+|..+ .+..+..|. ..+..|+|+|+.
T Consensus 141 I~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred EEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-cccccccCCCccceeeeeeCCCCc
Confidence 9999998754333331 246789999999 5899999999999999999886 444454443 357899999976
Q ss_pred CEEEEEeCCC---cEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-CC
Q 014934 304 RELASGGNDN---RLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GS 378 (415)
Q Consensus 304 ~~lasg~~dg---~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~-~~ 378 (415)
..|+++++|. .|.+||++.. .++..+++|+.+|.++.|++.+..+|+++| .|+.|.+||.++|+.+..+.. ++
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg--kD~~ii~wN~~tgEvl~~~p~~~n 297 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG--KDNRIICWNPNTGEVLGELPAQGN 297 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc--CCCCeeEecCCCceEeeecCCCCc
Confidence 4566666654 5999999864 678888999999999999999977888887 999999999999999999974 67
Q ss_pred CEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 379 QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 379 ~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
.+..+.|+|...-++++ .+-||.|.|+.+.+..
T Consensus 298 W~fdv~w~pr~P~~~A~-asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAA-ASFDGKISIYSLQGTD 330 (1049)
T ss_pred ceeeeeecCCCcchhhh-heeccceeeeeeecCC
Confidence 79999999998855554 5789999999987654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=182.16 Aligned_cols=221 Identities=18% Similarity=0.261 Sum_probs=182.7
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEE
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLL 263 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l 263 (415)
...|.+|.+......... .--.+.|.+++-+|+|.+|+.|+..|.+++|.+.+|..+..+.+|-..|+|+.|+ +.+|
T Consensus 60 rp~l~vw~i~k~~~~~q~-~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 60 RPLLHVWEILKKDQVVQY-IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred CccccccccCchhhhhhh-cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence 357899988665443322 1335889999999999999999999999999999999999999999999999998 6899
Q ss_pred EEEeCCCcEEEEECCC--------CCccEEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEECCCCceeEEeccCC
Q 014934 264 SSGSRDKSILQRDIRA--------QEDFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHSTQPVLKYCEHT 333 (415)
Q Consensus 264 ~sgs~dg~I~iwd~~~--------~~~~~~~~~~h~~~V~~l~~spd--g~~lasg~~dg~I~iwd~~~~~~~~~~~~h~ 333 (415)
++|+.||.|.+|++.. ...+.+.+..|.-.|+.+...+. ..+|++++.|.++++||+..+..+.++ ...
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-~fp 217 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-TFP 217 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-ecC
Confidence 9999999999998642 22467889999999999998764 467999999999999999999988887 456
Q ss_pred CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc----------------EEEEe-eCC--CCEEEEEECCCCCeEEE
Q 014934 334 AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT----------------HLSCM-DTG--SQVCNLVWSKNVNELVS 394 (415)
Q Consensus 334 ~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~----------------~~~~~-~~~--~~V~~l~~s~~~~~l~s 394 (415)
..+.+++..|.++.+++ |+.+|.|.+.++..-. .+..+ .+. +.|++++.+-||..|++
T Consensus 218 ~si~av~lDpae~~~yi---Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYI---GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred CcceeEEEcccccEEEe---cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 78999999999885555 4489999998875422 11222 133 48999999999999999
Q ss_pred EEecCCCcEEEEECCCCcc
Q 014934 395 THGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s~~~ 413 (415)
|+.||+++|||+.+.+.
T Consensus 295 --Gd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 295 --GDEDGKVCVWDIYSKQC 311 (476)
T ss_pred --eCCCCCEEEEecchHHH
Confidence 99999999999987553
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-21 Score=169.84 Aligned_cols=233 Identities=14% Similarity=0.223 Sum_probs=183.5
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
+|..|.|+| +.+|+++.||.+++|+....+....+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++... .+
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~i 90 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QI 90 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-ee
Confidence 588999998 67888889999999999888655544 6789999999986 567899999999999999987654 45
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
..|...|.||... .+.+++|+.|++|++||.|... ....+.. ...|.++.. .|+.|++|+.|..|.+||+++..
T Consensus 91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-ccccccc-CceEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence 5699999999999 5899999999999999999744 2333332 337877765 47899999999999999999875
Q ss_pred eeEEec--cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE----EEEee----------CCCCEEEEEECCC
Q 014934 325 PVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH----LSCMD----------TGSQVCNLVWSKN 388 (415)
Q Consensus 325 ~~~~~~--~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~----~~~~~----------~~~~V~~l~~s~~ 388 (415)
...+.. .-+..+.+|++-|.+...+++. -||.|.+=.+...+. ...++ -..+|.+++|+|-
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sS---ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSS---IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEe---ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 444322 3445689999999887666654 799988776665421 11222 1246899999999
Q ss_pred CCeEEEEEecCCCcEEEEECCCCccc
Q 014934 389 VNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
...|++ |++||.|.+||..+.+++
T Consensus 244 ~~tfaT--gGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 244 HGTFAT--GGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred cceEEe--cCCCceEEEccCcchhhh
Confidence 999999 889999999999876654
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=190.37 Aligned_cols=226 Identities=22% Similarity=0.311 Sum_probs=187.5
Q ss_pred CcEEEEEcCCeEEEEECCCCC--eEEeEecCCCCCeEEEEE-cCCCCeEEEEECCCcEEEEECCCCe--eeEE-------
Q 014934 178 HNVLAVGLGNCVYLWNACSSK--VTKLCDLGIDDSVCSVGW-ANRNTHLAVGTSHGKVQIWDASRCK--RVRT------- 245 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~--~~~~~~~~~~~~V~~v~~-sp~g~~la~g~~dg~V~iwd~~~~~--~~~~------- 245 (415)
..+|.++.|.+|++|+...+. ++..+. .|.+.|.|+++ .++...+|+|+-|+.|.|||+.++. .+..
T Consensus 86 ~tlIS~SsDtTVK~W~~~~~~~~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 86 KTLISASSDTTVKVWNAHKDNTFCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred CceEEecCCceEEEeecccCcchhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence 467888899999999998874 334443 79999999999 7788999999999999999998762 2222
Q ss_pred -ec-CCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 246 -ME-GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 246 -l~-~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
+. ++...|.+++.++ ..+++|+..+.|++||.++..+ +..+.||...|..+..++||+.+++++.||+|++||+.
T Consensus 165 sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG 243 (735)
T ss_pred cCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence 22 7888999999995 4999999999999999999984 77888999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEEEEeeCCCCEEEEEECCCCCeEEEEEecCC
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
..+++.++..|...|+++..+|.-. .+.+|+ .|+.|..=|+++. ++....+...+|..+..+.+.+-+-+ +..|
T Consensus 244 qQrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~--rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~Wv--tTtd 318 (735)
T KOG0308|consen 244 QQRCLATYIVHKEGVWALQSSPSFT-HVYSGG--RDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWV--TTTD 318 (735)
T ss_pred ccceeeeEEeccCceEEEeeCCCcc-eEEecC--CCCcEEecccCCchhheEeecCCCchhhhhhccccCCcee--eecc
Confidence 9999999999999999999998876 555565 8999999999984 44444556777888777755544333 3468
Q ss_pred CcEEEEECCC
Q 014934 401 NQIIVWRYPT 410 (415)
Q Consensus 401 g~I~vw~~~s 410 (415)
+.|.-|..+-
T Consensus 319 s~I~rW~~~~ 328 (735)
T KOG0308|consen 319 SSIKRWKLEP 328 (735)
T ss_pred ccceecCCcc
Confidence 8899887653
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-20 Score=174.47 Aligned_cols=233 Identities=19% Similarity=0.289 Sum_probs=192.3
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEec---CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDL---GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~---~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
.+....|+| .+++.....+.+++|+.+++.+.+...+ .....|.|++|.++|+ +++|..+|.|.||+..+.+..
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~ 280 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRIS 280 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEE
Confidence 466788999 6788888889999999999887665543 3357899999999998 678999999999999988888
Q ss_pred EEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCC---------------------------------------cc
Q 014934 244 RTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQE---------------------------------------DF 283 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~---------------------------------------~~ 283 (415)
+....|.+.|.+++.- ...|++|+.|+.|..||-.-.. ..
T Consensus 281 k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f 360 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF 360 (626)
T ss_pred eEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence 7777999999999987 5677779999999999832111 01
Q ss_pred EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 284 ~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
.....+|..+..+++.+|+.++|++++.|+.+++|+ ..+++... .-..++.++.|+|.| .+|.|. ..|...+.
T Consensus 361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg--~va~Gt--~~G~w~V~ 433 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG--VVAVGT--ATGRWFVL 433 (626)
T ss_pred eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc--eEEEee--ccceEEEE
Confidence 122457888999999999999999999999999999 44555543 345678999999998 566654 89999999
Q ss_pred ECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 364 NTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 364 d~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
|.++...+.......++..+.|+|+|.+|+. |+.|+.|+||.+...
T Consensus 434 d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv--gs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 434 DTETQDLVTIHTDNEQLSVVRYSPDGAFLAV--GSHDNHIYIYRVSAN 479 (626)
T ss_pred ecccceeEEEEecCCceEEEEEcCCCCEEEE--ecCCCeEEEEEECCC
Confidence 9999777766656899999999999999999 899999999998754
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=177.53 Aligned_cols=199 Identities=24% Similarity=0.405 Sum_probs=162.9
Q ss_pred CCCCCeEEEEEcCCC--CeEEEEECCCcEEEEECCC----------------CeeeEEecCCCccEEEEEeeC---CEEE
Q 014934 206 GIDDSVCSVGWANRN--THLAVGTSHGKVQIWDASR----------------CKRVRTMEGHRLRVGALAWSS---SLLS 264 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g--~~la~g~~dg~V~iwd~~~----------------~~~~~~l~~h~~~V~~l~~~~---~~l~ 264 (415)
.|.+.+.-+.-++-| .+.|+-+..|.|+|||+.. .+++.++.+|...-.+|+|++ ..|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 666777777777654 4566667889999999742 356778889999999999996 5688
Q ss_pred EEeCCCcEEEEECCCCCcc--EEEeccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEECCCC---ceeEEeccCCCcEEE
Q 014934 265 SGSRDKSILQRDIRAQEDF--VSKLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHST---QPVLKYCEHTAAVKA 338 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~spd-g~~lasg~~dg~I~iwd~~~~---~~~~~~~~h~~~V~~ 338 (415)
+|..-+.|++|...++.-. ...+.+|...|..|+|||. ...||+|+-||.|+|||++.+ .++. .+.|.+.|+.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNV 307 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNV 307 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceee
Confidence 9988999999998876521 2345689999999999994 568999999999999999987 3343 3789999999
Q ss_pred EEEcCCCCcEEEEEcCCCCCeEEEEECCC---CcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 339 IAWSPHLHGLLASGGGTADRCIRFWNTTT---NTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 339 l~~sp~~~~llasggg~~d~~I~iwd~~t---~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
|.|+..-. +||+|+ .||+++|||+++ ++++..++ |..+|+++.|+|...-.+.+ ++.|++|.+||+.
T Consensus 308 ISWnr~~~-lLasG~--DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaa-sg~D~QitiWDls 378 (440)
T KOG0302|consen 308 ISWNRREP-LLASGG--DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAA-SGEDNQITIWDLS 378 (440)
T ss_pred EEccCCcc-eeeecC--CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEe-ccCCCcEEEEEee
Confidence 99999877 999998 999999999986 56677776 78999999999987655554 5689999999985
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=200.37 Aligned_cols=197 Identities=26% Similarity=0.432 Sum_probs=167.1
Q ss_pred CCCeEEEEEcCCCCeEEEEE--CCCcEEEEECCC------------CeeeEEecCCCccEEEEEee--CCEEEEEeCCCc
Q 014934 208 DDSVCSVGWANRNTHLAVGT--SHGKVQIWDASR------------CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKS 271 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~--~dg~V~iwd~~~------------~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~ 271 (415)
...|.+|..+|+|..+|+|+ .||.++||+.+. .+.+.++..|.+.|.|+.|+ +.+|++|+.|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 56799999999999999999 899999998642 34566777899999999998 689999999999
Q ss_pred EEEEECCC------C-----C------ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCC
Q 014934 272 ILQRDIRA------Q-----E------DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTA 334 (415)
Q Consensus 272 I~iwd~~~------~-----~------~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~ 334 (415)
|.+|+... . . +.+..+.+|...|..++|+|++.+||+++.|++|.|||.++.+.+..+++|..
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s 172 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS 172 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc
Confidence 99999772 0 0 24667889999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-------CCCCEEEEEECCCCCeEEEEEecCCC--cEEE
Q 014934 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-------TGSQVCNLVWSKNVNELVSTHGYSQN--QIIV 405 (415)
Q Consensus 335 ~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-------~~~~V~~l~~s~~~~~l~s~~g~~dg--~I~v 405 (415)
.|..+.|.|-|+ +||+-+ .|++|+||++.+-...+.+. .......+.|||||.+|++.++...+ ++.|
T Consensus 173 ~VKGvs~DP~Gk-y~ASqs--dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 173 LVKGVSWDPIGK-YFASQS--DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred cccceEECCccC-eeeeec--CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 999999999998 666665 79999999988766666664 23458899999999999998764432 4555
Q ss_pred EE
Q 014934 406 WR 407 (415)
Q Consensus 406 w~ 407 (415)
.+
T Consensus 250 ie 251 (942)
T KOG0973|consen 250 IE 251 (942)
T ss_pred Ee
Confidence 43
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-21 Score=178.93 Aligned_cols=229 Identities=21% Similarity=0.376 Sum_probs=177.4
Q ss_pred CcEEEEEc--CC----eEEEEECCCCCeEEeEecCCCCCeEEEEEcC-------CCCeEEEEECCCcEEEEECCCCe---
Q 014934 178 HNVLAVGL--GN----CVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-------RNTHLAVGTSHGKVQIWDASRCK--- 241 (415)
Q Consensus 178 ~~~la~~~--d~----~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-------~g~~la~g~~dg~V~iwd~~~~~--- 241 (415)
.++|+++. ++ .||+|+-....+..-..+--.....|++|.. .|+++|+|+.+..|.|||+.-..
T Consensus 137 DnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~ 216 (463)
T KOG0270|consen 137 DNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVL 216 (463)
T ss_pred CcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccc
Confidence 67777773 22 4788876543322111111134557888853 36799999999999999974211
Q ss_pred ------------------eeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEe
Q 014934 242 ------------------RVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS 300 (415)
Q Consensus 242 ------------------~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 300 (415)
.-....+|+..|.+|+|+ .++|++||.|.+|++||+.+++ +...+..|...|.++.|+
T Consensus 217 P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~-p~~s~~~~~k~Vq~l~wh 295 (463)
T KOG0270|consen 217 PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK-PKSSITHHGKKVQTLEWH 295 (463)
T ss_pred cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC-cceehhhcCCceeEEEec
Confidence 001123699999999998 4899999999999999999998 677888899999999999
Q ss_pred C-CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEEEEee-CC
Q 014934 301 Y-DNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMD-TG 377 (415)
Q Consensus 301 p-dg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~~~~~-~~ 377 (415)
| ....|++|+.|++|.+.|.+........-.-.+.|-.++|.|.....+.++. .||+++-+|++.. +++.++. |.
T Consensus 296 ~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t--ddG~v~~~D~R~~~~~vwt~~AHd 373 (463)
T KOG0270|consen 296 PYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST--DDGTVYYFDIRNPGKPVWTLKAHD 373 (463)
T ss_pred CCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec--CCceEEeeecCCCCCceeEEEecc
Confidence 8 5678999999999999999953332222234578999999999987777765 8999999999874 8888886 78
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
..|.+++++..-..++++ ++.|+.+++|++.-
T Consensus 374 ~~ISgl~~n~~~p~~l~t-~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 374 DEISGLSVNIQTPGLLST-ASTDKVVKLWKFDV 405 (463)
T ss_pred CCcceEEecCCCCcceee-ccccceEEEEeecC
Confidence 899999999998888877 77899999999864
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=188.71 Aligned_cols=232 Identities=20% Similarity=0.325 Sum_probs=190.1
Q ss_pred eeEeecCCCc-EEEEEcCCeEEEEECCCCCeEEeEec-CCCCCeEE-EEEcC-CCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 170 LNLVDWSSHN-VLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCS-VGWAN-RNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 170 i~~l~ws~~~-~la~~~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~-v~~sp-~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
+..++..++. ++.++.|+++++|+-..++......+ +|.+.|.+ +++.+ ++-.|++|+.|+.|.+|...+..++.+
T Consensus 17 Vr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~ 96 (745)
T KOG0301|consen 17 VRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYT 96 (745)
T ss_pred hheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhh
Confidence 3445555544 45555689999999888776664433 56666666 88875 555799999999999999999999999
Q ss_pred ecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 246 MEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 246 l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
+.+|...|.+++.. ...+++||.|.++++|-+.. +...+.+|...|++++.-|++ .++||+.|..|++|.- ++
T Consensus 97 LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~ 170 (745)
T KOG0301|consen 97 LKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GT 170 (745)
T ss_pred hhccccceeeeecCCcCceEecccccceEEecchh---hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cc
Confidence 99999999999965 45699999999999998754 445689999999999999987 8899999999999986 77
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe-eCCCCEEEEEECCCCCeEEEEEecCCCcE
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I 403 (415)
.+.+|.+|+..|+++++-++++ ++ +++ .||.|++|++ +|+++.+. .|.+.|+++....++..+++ .++|+++
T Consensus 171 ~l~tf~gHtD~VRgL~vl~~~~-fl-Scs--NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs--~gEDrtl 243 (745)
T KOG0301|consen 171 LLKTFSGHTDCVRGLAVLDDSH-FL-SCS--NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS--TGEDRTL 243 (745)
T ss_pred hhhhhccchhheeeeEEecCCC-eE-eec--CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE--ecCCceE
Confidence 8899999999999999999865 44 444 7999999999 66666655 47788999998888888888 4699999
Q ss_pred EEEECCCCccc
Q 014934 404 IVWRYPTMSKV 414 (415)
Q Consensus 404 ~vw~~~s~~~l 414 (415)
+||+.....|.
T Consensus 244 riW~~~e~~q~ 254 (745)
T KOG0301|consen 244 RIWKKDECVQV 254 (745)
T ss_pred EEeecCceEEE
Confidence 99998755543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=174.27 Aligned_cols=234 Identities=14% Similarity=0.205 Sum_probs=190.4
Q ss_pred cceeEeecCC-C-cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-H-NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~-~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
..|+.+.+++ . .++.++.|..|++|............ .|.++|+.+..+|.|.||++++.||...+.|++++..+..
T Consensus 262 kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~-~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~ 340 (506)
T KOG0289|consen 262 KKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSR-PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTV 340 (506)
T ss_pred eEEEEEEeccchhheeecCCcceEEeeccccccCccccc-cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEE
Confidence 3478888998 3 34444468899999987776555544 7899999999999999999999999999999999988776
Q ss_pred ecC--CCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 246 MEG--HRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 246 l~~--h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
... ..-.+++.+|+| -+|.+|..||.|++||+..+. .+..+.+|.++|..++|+.+|-+||++++|+.|++||++
T Consensus 341 vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 341 VSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred EeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence 653 334589999994 688899999999999999988 588899999999999999999999999999999999999
Q ss_pred CCceeEEecc-CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC--CcEEEEee-CCCCEEEEEECCCCCeEEEEEe
Q 014934 322 STQPVLKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT--NTHLSCMD-TGSQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 322 ~~~~~~~~~~-h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t--~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g 397 (415)
.-+...++.- ....|.++.|.+.|.+|.+. | .|=.|++++-.+ ..++..+. +.+..+++.|..+.+++++ +
T Consensus 420 Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g--~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s--~ 494 (506)
T KOG0289|consen 420 KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-G--SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLAS--T 494 (506)
T ss_pred hhcccceeeccccccceeEEEcCCCCeEEee-c--ceeEEEEEecccccceeeehhhhcccccceeeecccceEEee--c
Confidence 8877777653 23479999999999866554 3 577777776443 33444443 4558899999999999999 7
Q ss_pred cCCCcEEEEEC
Q 014934 398 YSQNQIIVWRY 408 (415)
Q Consensus 398 ~~dg~I~vw~~ 408 (415)
+.|..++++.+
T Consensus 495 smd~~l~~~a~ 505 (506)
T KOG0289|consen 495 SMDAILRLYAL 505 (506)
T ss_pred cchhheEEeec
Confidence 78888888765
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-20 Score=166.08 Aligned_cols=226 Identities=18% Similarity=0.279 Sum_probs=184.4
Q ss_pred CcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
+-.+.+.+|.+ ..++..+.|++|+.+|+.++....+. .|...|.||..++....+++|+.|++|++||......+..
T Consensus 54 ~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig--th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~ 131 (323)
T KOG1036|consen 54 GAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG--THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT 131 (323)
T ss_pred CCceeeeeccCCceEEEeccCceEEEEEecCCcceeec--cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccc
Confidence 33466677777 55666668999999999999877666 6889999999999888999999999999999987555555
Q ss_pred ecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEE-eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC-
Q 014934 246 MEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK-LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST- 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~- 323 (415)
+. ....|.++...++.|++|+.|..+.+||+|+.....+. -..-+-.+.++++-|++.-+|+++-||+|.+=.+...
T Consensus 132 ~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~ 210 (323)
T KOG1036|consen 132 FD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSE 210 (323)
T ss_pred cc-cCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCch
Confidence 54 34589999999999999999999999999987754322 2234567999999999888999999999988666554
Q ss_pred ---ceeEEeccCC---------CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-CCCEEEEEECCCCC
Q 014934 324 ---QPVLKYCEHT---------AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVCNLVWSKNVN 390 (415)
Q Consensus 324 ---~~~~~~~~h~---------~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~-~~~V~~l~~s~~~~ 390 (415)
+.-..|+.|. .+|++|+|+|- ...|+||| .||.|.+||+.+.+.+..+.. ...|..++|+.+|.
T Consensus 211 ~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~-~~tfaTgG--sDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~ 287 (323)
T KOG1036|consen 211 EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI-HGTFATGG--SDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGS 287 (323)
T ss_pred HHhhhceeEEeeecccCCceEEEEeceeEeccc-cceEEecC--CCceEEEccCcchhhhhhccCCCCceEEEEeccCCC
Confidence 3344566664 37899999998 45899998 899999999999998888764 46799999999999
Q ss_pred eEEEEEec
Q 014934 391 ELVSTHGY 398 (415)
Q Consensus 391 ~l~s~~g~ 398 (415)
.||.++.+
T Consensus 288 ~LAia~sy 295 (323)
T KOG1036|consen 288 LLAIASSY 295 (323)
T ss_pred eEEEEech
Confidence 99986443
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-20 Score=178.44 Aligned_cols=236 Identities=20% Similarity=0.315 Sum_probs=192.5
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCe-EEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKV-TKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~-~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
.|.+++++. .+.||++ .+|.|.||++..+=. ..++..+....|-+++|+ +|..|.+.+.+|.|.-||+.+.+.+..
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~ 105 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYN 105 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEE
Confidence 378999998 7889999 689999999988643 333443557889999999 555677788999999999999999999
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc-EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF-VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
+....+.|++++.+ ...++.|+.||.++.+++..+.-. ...+...++.|.+++|+|++..||.|+.||.|++||...
T Consensus 106 ~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 106 IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence 99999999999999 479999999997777777655411 223334568899999999999999999999999999999
Q ss_pred CceeEEec-------c-CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEE
Q 014934 323 TQPVLKYC-------E-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 323 ~~~~~~~~-------~-h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~ 393 (415)
+..++... . ...-|+++.|-.++ .+++|. .-|+|.+||...|.+++.+. +...|.+++..++++.++
T Consensus 186 ~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgD--S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 186 GQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGD--SAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred CceEEEeeecccccccCCceEEEEEEEeecC--cEEEec--CCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence 98776221 1 23347788887664 788876 78999999999999998876 778999999999999999
Q ss_pred EEEecCCCcEEEEECCCC
Q 014934 394 STHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s~ 411 (415)
+ ++.|++|.-|...+.
T Consensus 262 s--aGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 262 S--AGVDPKIIQYSLTTN 277 (691)
T ss_pred E--ccCCCceEEEEecCC
Confidence 8 668999888876654
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-22 Score=197.19 Aligned_cols=215 Identities=21% Similarity=0.389 Sum_probs=190.4
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEE
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLL 263 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l 263 (415)
...+++|+.+.. ..|...|.++..-..++.+++|+.|-.+-+|.+.....+..+.+|..+|-++.|+ ..+|
T Consensus 13 ~t~Lr~~~~~~~-------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Ll 85 (825)
T KOG0267|consen 13 ATKLRVWDTREF-------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLL 85 (825)
T ss_pred eeccccccchhh-------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhh
Confidence 445667765321 1567788888887778899999999999999998888888899999999999999 4688
Q ss_pred EEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcC
Q 014934 264 SSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343 (415)
Q Consensus 264 ~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp 343 (415)
+.|+.+|+|++||+.... .++++.+|...++++.|+|-+.++|+|+.|..+++||.+..-+.+.+.+|...|..++|+|
T Consensus 86 aagsasgtiK~wDleeAk-~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP 164 (825)
T KOG0267|consen 86 AAGSASGTIKVWDLEEAK-IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP 164 (825)
T ss_pred cccccCCceeeeehhhhh-hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC
Confidence 999999999999999876 6889999999999999999999999999999999999998889999999999999999999
Q ss_pred CCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 344 HLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 344 ~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+|+ ++++++ +|..++|||...|+.+..+. |...+..+.|+|..-.++. |+.|+.+++||+++.+-
T Consensus 165 ~Gr-~v~~g~--ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~--Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 165 DGR-WVASGG--EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP--GSSDRTVRFWDLETFEV 230 (825)
T ss_pred CCc-eeeccC--CcceeeeecccccccccccccccccccccccCchhhhhcc--CCCCceeeeeccceeEE
Confidence 998 777776 79999999999999999998 7788999999999877777 89999999999987553
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=175.73 Aligned_cols=238 Identities=16% Similarity=0.289 Sum_probs=196.7
Q ss_pred CCcceeEeecCC-Cc-EEEEE-cCCeEEEEECCCCCeEEeEec-CC-CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC
Q 014934 166 DDFYLNLVDWSS-HN-VLAVG-LGNCVYLWNACSSKVTKLCDL-GI-DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 166 ~~~~i~~l~ws~-~~-~la~~-~d~~V~iwd~~~~~~~~~~~~-~~-~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~ 240 (415)
..|.|.+..|.| +. .++++ .....|.||+.+.++.++-.. ++ ...+.....++++++||+.+..|.|.|....++
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh
Confidence 367788999999 44 44444 456799999999988777654 22 346788899999999999999999999999999
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCe--EEEEEeCCCCEEEEEeCCCcEE
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV--CGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V--~~l~~spdg~~lasg~~dg~I~ 316 (415)
+.+.+++ -.+.|..++|+ +..|++++.+|.|++||++... +++.+.. .+.| ++++.++++.+||+|+..|.|.
T Consensus 336 eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~-~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 336 ELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS-CLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVN 412 (514)
T ss_pred hhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc-eEEEEee-cCccceeeeeecCCCceEEeccCcceEE
Confidence 9998887 57889999998 6788888899999999999985 5666553 3334 4566779999999999999999
Q ss_pred EEECCC------CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC----CCCEEEEEEC
Q 014934 317 VWNQHS------TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT----GSQVCNLVWS 386 (415)
Q Consensus 317 iwd~~~------~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~----~~~V~~l~~s 386 (415)
|||..+ .+|+..+..-..+|+.+.|+++.. +||.++...+..+|+-.+.+......+.. -+.|++++|+
T Consensus 413 IYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS 491 (514)
T ss_pred EeccchhhccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec
Confidence 999653 478888888888999999999987 77766655788999999998877766653 3569999999
Q ss_pred CCCCeEEEEEecCCCcEEEEECC
Q 014934 387 KNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 387 ~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
|.+.+|+. |..+|++.+|++.
T Consensus 492 P~sG~lAv--GNe~grv~l~kL~ 512 (514)
T KOG2055|consen 492 PNSGYLAV--GNEAGRVHLFKLH 512 (514)
T ss_pred CCCceEEe--ecCCCceeeEeec
Confidence 99999999 8999999999874
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-21 Score=170.26 Aligned_cols=207 Identities=17% Similarity=0.340 Sum_probs=177.8
Q ss_pred EEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEE-
Q 014934 200 TKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRD- 276 (415)
Q Consensus 200 ~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd- 276 (415)
.+.+. +|.+.|..|+-......+.+++.|-+.+||.+++++++..+.+|.+.|++++|+ +.++++++.|++..||.
T Consensus 141 vre~~-GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 141 VRELE-GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred hhhhc-ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 34443 899999999988777799999999999999999999999999999999999998 57899999999999997
Q ss_pred -----CCCCC---------------------------------ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 014934 277 -----IRAQE---------------------------------DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 277 -----~~~~~---------------------------------~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iw 318 (415)
+.... .++..+.+|...|.+..|-..|+.+++++.|.+..+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 21100 1455678999999999999999999999999999999
Q ss_pred ECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-EEEEee-CCCCEEEEEECCCCCeEEEEE
Q 014934 319 NQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCMD-TGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 319 d~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-~~~~~~-~~~~V~~l~~s~~~~~l~s~~ 396 (415)
|+++++++..+.+|....+.++-+|.++ |+++++ .|.+.++||++..- .+..+. |...|+++.|..+.+ +++
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQr-LVvTsS--rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVS-- 373 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQR-LVVTSS--RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVS-- 373 (481)
T ss_pred eeccCceeccccCcchhccccccCCcce-EEEEec--cCceeEeccchhhcceeeeecccccceeEEEEecCCc-eee--
Confidence 9999999999999999999999999987 888887 89999999998432 233333 567899999998876 566
Q ss_pred ecCCCcEEEEECCCCcc
Q 014934 397 GYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 397 g~~dg~I~vw~~~s~~~ 413 (415)
|++|.+|+|||+..|..
T Consensus 374 gSDDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRS 390 (481)
T ss_pred cCCCceEEEeeeccccC
Confidence 88999999999999864
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-19 Score=167.25 Aligned_cols=226 Identities=11% Similarity=0.088 Sum_probs=169.5
Q ss_pred cEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeE-EEEECCCcEEEEECCCCeeeEEecCCCccEEEE
Q 014934 179 NVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDASRCKRVRTMEGHRLRVGAL 256 (415)
Q Consensus 179 ~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~l-a~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l 256 (415)
++++++ .++.|++||..+++....+. .+ ..+.+++|+|+|+.+ +++..++.|++||..+++.+..+..+.. +..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP-VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE-CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 344444 68999999999998877775 23 447889999999876 5667789999999999888777765443 4667
Q ss_pred Eee--CCEEE-EEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC-cEEEEECCCCceeEEeccC
Q 014934 257 AWS--SSLLS-SGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN-RLFVWNQHSTQPVLKYCEH 332 (415)
Q Consensus 257 ~~~--~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg-~I~iwd~~~~~~~~~~~~h 332 (415)
+|+ ++.++ +++.|+.|++||+++.. .+..+. +...+.+++|+|+|++++++..++ .+.+||..+++.+..+. .
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~ 155 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-V 155 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-c
Confidence 787 45554 45678999999998765 344443 234578899999999999988765 57788998887665543 3
Q ss_pred CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC--------CCEEEEEECCCCCeEEEEEecCCCcEE
Q 014934 333 TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--------SQVCNLVWSKNVNELVSTHGYSQNQII 404 (415)
Q Consensus 333 ~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~--------~~V~~l~~s~~~~~l~s~~g~~dg~I~ 404 (415)
...+..++|+|++..+++++. .++.|++||+.+++.+..+... .....+.|+++++.++++. ..++.|.
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~-~~~~~i~ 232 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL-GPANRVA 232 (300)
T ss_pred CCCccEEEECCCCCEEEEEcC--CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc-CCCCeEE
Confidence 345678999999987767654 6899999999999887766421 1245789999999876643 3567899
Q ss_pred EEECCCCcc
Q 014934 405 VWRYPTMSK 413 (415)
Q Consensus 405 vw~~~s~~~ 413 (415)
+||..+++.
T Consensus 233 v~d~~~~~~ 241 (300)
T TIGR03866 233 VVDAKTYEV 241 (300)
T ss_pred EEECCCCcE
Confidence 999987653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-19 Score=161.08 Aligned_cols=235 Identities=20% Similarity=0.349 Sum_probs=177.4
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCC--e--EEeEecCCCCCeEEEEEcC--CCCeEEEEECCCcEEEEECC--
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK--V--TKLCDLGIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDAS-- 238 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~--~--~~~~~~~~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~-- 238 (415)
.|+++.|.. ++-+|++ +|++|+|||..... . ..... .|.+.|..|.|.+ -|+.+|+++.|++|.||.-.
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~ 93 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEK 93 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecCCceeeeeeccc
Confidence 478888988 6666665 78999999964432 2 22222 6789999999975 48999999999999999752
Q ss_pred -------CCeeeEEecCCCccEEEEEeeC----CEEEEEeCCCcEEEEECCCCCc-----cEEEec-------cccCCeE
Q 014934 239 -------RCKRVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQED-----FVSKLS-------GHKSEVC 295 (415)
Q Consensus 239 -------~~~~~~~l~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~-----~~~~~~-------~h~~~V~ 295 (415)
......++......|+++.|.| -.|++++.||.++||+.-.... +.+.+. .+.....
T Consensus 94 ~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~ 173 (361)
T KOG2445|consen 94 SEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCF 173 (361)
T ss_pred ccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcce
Confidence 1234556677788999999984 5799999999999998765431 111222 4677889
Q ss_pred EEEEeC---CCCEEEEEeCC-----CcEEEEECCCC----ceeEEeccCCCcEEEEEEcCCCC---cEEEEEcCCCCCeE
Q 014934 296 GLKWSY---DNRELASGGND-----NRLFVWNQHST----QPVLKYCEHTAAVKAIAWSPHLH---GLLASGGGTADRCI 360 (415)
Q Consensus 296 ~l~~sp---dg~~lasg~~d-----g~I~iwd~~~~----~~~~~~~~h~~~V~~l~~sp~~~---~llasggg~~d~~I 360 (415)
|+.|+| ...+||+|+.+ +.++||..... ..+.++.+|..+|++|+|.|.-. ++||++. .|| |
T Consensus 174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~--kDg-v 250 (361)
T KOG2445|consen 174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT--KDG-V 250 (361)
T ss_pred EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee--cCc-E
Confidence 999997 45678888876 57899986543 34556678999999999999732 4788876 799 9
Q ss_pred EEEECCCC--------------------cEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 361 RFWNTTTN--------------------THLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 361 ~iwd~~t~--------------------~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+||++... +.+..++ |.++|..+.|+-.|..|.+ .++||.|++|+..
T Consensus 251 ~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS--tGdDG~VRLWkan 318 (361)
T KOG2445|consen 251 RIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS--TGDDGCVRLWKAN 318 (361)
T ss_pred EEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee--cCCCceeeehhhh
Confidence 99999731 1122232 6789999999999999988 4689999999853
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=173.85 Aligned_cols=238 Identities=18% Similarity=0.263 Sum_probs=182.6
Q ss_pred ceeEeecCC--C-cEEEEEc-CCeEEEEECCCCC----eEEeEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCC
Q 014934 169 YLNLVDWSS--H-NVLAVGL-GNCVYLWNACSSK----VTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 169 ~i~~l~ws~--~-~~la~~~-d~~V~iwd~~~~~----~~~~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~ 239 (415)
.|.+++|+| + +++|+|. .|.|-+||..+.+ -+.++. .|...|.++.|+|. -..+.+.+.||+|++-|++.
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~ 266 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG 266 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence 489999999 3 6788884 5899999995322 123332 78999999999995 46888899999999999987
Q ss_pred Ce--eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC-CCEEEEEeCCCc
Q 014934 240 CK--RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD-NRELASGGNDNR 314 (415)
Q Consensus 240 ~~--~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~lasg~~dg~ 314 (415)
.. .+..+..-...+..+.++ ...++.|..=|...+||.|+.......+.-|+..|++++++|. ..+||+++.|++
T Consensus 267 ~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T 346 (498)
T KOG4328|consen 267 NISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT 346 (498)
T ss_pred hhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc
Confidence 54 333333344556666676 3566677777799999999988667778889999999999994 457899999999
Q ss_pred EEEEECCCC---c-eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC----CCCcEEEEeeCCCC------E
Q 014934 315 LFVWNQHST---Q-PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT----TTNTHLSCMDTGSQ------V 380 (415)
Q Consensus 315 I~iwd~~~~---~-~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~----~t~~~~~~~~~~~~------V 380 (415)
++|||++.- . ++.....|...|.+..|||.+..|+.++ .|..|+|||. ....++..|.|... .
T Consensus 347 ~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~---~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~ 423 (498)
T KOG4328|consen 347 AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC---QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTP 423 (498)
T ss_pred eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec---cCCceEEeecccccccCCccceeeccCcccccccc
Confidence 999999753 2 3344448999999999999998766555 7999999998 44555666665432 4
Q ss_pred EEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 381 ~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
....|.|+..++++ |..-..|-|+|-..++
T Consensus 424 fKA~W~P~~~li~v--g~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 424 FKAAWDPDYNLIVV--GRYPRPIDVFDGNGGQ 453 (498)
T ss_pred hhheeCCCccEEEE--eccCcceeEEcCCCCE
Confidence 56899999999988 6666679999876554
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=162.99 Aligned_cols=196 Identities=20% Similarity=0.279 Sum_probs=167.3
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC----CEEEEEeCCCcEEEEECCCCC
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQE 281 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~ 281 (415)
.|.+.+++|+.+ |.++|+|+.|-+|+|||+.+.+.+..+-.|.+.|+++.|.+ ..|++|+.||.|.+|+...-.
T Consensus 41 aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~ 118 (362)
T KOG0294|consen 41 AHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE 118 (362)
T ss_pred ccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE
Confidence 688999999984 89999999999999999999999999999999999999984 379999999999999998875
Q ss_pred ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEE
Q 014934 282 DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIR 361 (415)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~ 361 (415)
.+..+++|.+.|+.++.+|.|++-++.+.|+.+++||+-.|+.-..+.-. ....-+.|+|.|.++++.+ ...|-
T Consensus 119 -~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~----~~~i~ 192 (362)
T KOG0294|consen 119 -LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSG----RNKID 192 (362)
T ss_pred -EeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEe----ccEEE
Confidence 78999999999999999999999999999999999999988765555322 2234499999999666655 57899
Q ss_pred EEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 362 FWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 362 iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+|.+.+......+.....+.++.|.. +.+|++ |.+|+.|.+||..+..
T Consensus 193 i~q~d~A~v~~~i~~~~r~l~~~~l~-~~~L~v--G~d~~~i~~~D~ds~~ 240 (362)
T KOG0294|consen 193 IYQLDNASVFREIENPKRILCATFLD-GSELLV--GGDNEWISLKDTDSDT 240 (362)
T ss_pred EEecccHhHhhhhhccccceeeeecC-CceEEE--ecCCceEEEeccCCCc
Confidence 99999988887776666677777765 456777 7899999999998744
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-19 Score=175.12 Aligned_cols=242 Identities=19% Similarity=0.276 Sum_probs=189.5
Q ss_pred CCcceeEeecCC---CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 166 DDFYLNLVDWSS---HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 166 ~~~~i~~l~ws~---~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.++ |+.+.--+ +.++.+..+|.+.|||+.+++.+..+. ++.+.|+++.=+|-=..+|+|..+|+|.|++++.++.
T Consensus 159 ~~~-Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~-~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki 236 (910)
T KOG1539|consen 159 GDF-ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ-EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI 236 (910)
T ss_pred CCc-eeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEec-ccccceeEeccCCcceEEEEeccCceEEEEEcccCcE
Confidence 344 66664333 566666789999999999999998887 6779999999999989999999999999999999999
Q ss_pred eEEecCCCccEEEEEee--C-CEEEEEeCCCcEEEEECCCCCccEEEecc------------------------------
Q 014934 243 VRTMEGHRLRVGALAWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSG------------------------------ 289 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------------------------------ 289 (415)
+.+++-..++|+.++|. | .++++|+..|.+.+||++...........
T Consensus 237 l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 237 LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV 316 (910)
T ss_pred EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence 99999446999999998 4 57888888899999998653310000001
Q ss_pred --------------------------------------------------------------------------------
Q 014934 290 -------------------------------------------------------------------------------- 289 (415)
Q Consensus 290 -------------------------------------------------------------------------------- 289 (415)
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence
Q ss_pred --------------------------------------------cc------CCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 014934 290 --------------------------------------------HK------SEVCGLKWSYDNRELASGGNDNRLFVWN 319 (415)
Q Consensus 290 --------------------------------------------h~------~~V~~l~~spdg~~lasg~~dg~I~iwd 319 (415)
+. ..+.+++.++.|++.+.|...|.|-+|+
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 11 3455666677777777777777788888
Q ss_pred CCCCceeEEe---ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE-----------------------
Q 014934 320 QHSTQPVLKY---CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC----------------------- 373 (415)
Q Consensus 320 ~~~~~~~~~~---~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~----------------------- 373 (415)
+.+|.....| ..|..+|++++..--++ ++++++ .+|.+++||..+...+..
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~--~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAG--ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred cccCeeecccccCccccCceeEEEecCCCc-eEEEcc--CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 7777766667 47999999999987776 677766 899999999986542211
Q ss_pred ------------------e-eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 374 ------------------M-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 374 ------------------~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+ .|+..|+.++|||||++|++ .+.|++|++||++++..+
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlis--asmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLIS--ASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEE--eecCCcEEEEeccCccee
Confidence 1 15678999999999999999 678999999999998754
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=160.64 Aligned_cols=235 Identities=23% Similarity=0.363 Sum_probs=184.5
Q ss_pred CCCcceeEeecCC--CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCC---CCeEEEEECCCcEEEEECC
Q 014934 165 QDDFYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR---NTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 165 ~~~~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~---g~~la~g~~dg~V~iwd~~ 238 (415)
...|.|..+.|-| ..++..+ .|.++++||..+.+....+. .++.|.+-+|+|- ..++|+|+.+-.|++-|+.
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 4567899999999 4455555 69999999999988776664 4588999999984 4588999999999999999
Q ss_pred CCeeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEE--------------eccccCCeEEEEEeC
Q 014934 239 RCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSK--------------LSGHKSEVCGLKWSY 301 (415)
Q Consensus 239 ~~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~--------------~~~h~~~V~~l~~sp 301 (415)
+|..-+++.+|...|.++.|++ -.|++|+.||.|++||+|....+... -..|.+.|.+++|+.
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 9999999999999999999995 47999999999999999865323322 235778899999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeE-Eec--cCCC----cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 302 DNRELASGGNDNRLFVWNQHSTQPVL-KYC--EHTA----AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 302 dg~~lasg~~dg~I~iwd~~~~~~~~-~~~--~h~~----~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
++.++++++.|.++++|+..+|+... .+- .|+. ++. +. +-+.. +++--- .++.+.++++-.|..+..+
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~-vfv~~p--~~~~lall~~~sgs~ir~l 331 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSD-VFVLFP--NDGSLALLNLLEGSFVRRL 331 (397)
T ss_pred cchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccc-eEEEEe--cCCeEEEEEccCceEEEee
Confidence 99999999999999999998875321 110 1221 111 22 22222 222222 5689999999999988888
Q ss_pred e-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 375 D-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 375 ~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
. +...|.+..+-++-+...+ |..|+.|..|-.
T Consensus 332 ~~h~k~i~c~~~~~~fq~~~t--g~~d~ni~~w~p 364 (397)
T KOG4283|consen 332 STHLKRINCAAYRPDFEQCFT--GDMNGNIYMWSP 364 (397)
T ss_pred ecccceeeEEeecCchhhhhc--cccCCccccccc
Confidence 7 4566888999999999998 899999999976
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-21 Score=173.79 Aligned_cols=199 Identities=20% Similarity=0.368 Sum_probs=179.1
Q ss_pred CCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccE
Q 014934 206 GIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFV 284 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 284 (415)
+|.+.|.|++=+|.. ..+|+|+.||.|+|||+.+..++.++..|.+.|..|++....+++++.|++|+.|-+... +.
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~--p~ 141 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP--PL 141 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCC--cc
Confidence 899999999999977 789999999999999999999999999999999999999899999999999999998774 45
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE
Q 014934 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 285 ~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd 364 (415)
+.+.+ ...+.++.-+..+..+||||. .|.|||..-..|+..+..-...|.++.|+|....+|++++ .|+.|.+||
T Consensus 142 ~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~--sDrsIvLyD 216 (433)
T KOG0268|consen 142 HTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA--SDRSIVLYD 216 (433)
T ss_pred eeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--cCCceEEEe
Confidence 66654 456888888888889999986 4999999999999999888889999999999999999997 899999999
Q ss_pred CCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 365 TTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 365 ~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
++++.+++.+-.+..-+.++|+|.+..+++ |.+|..++.||+..++.
T Consensus 217 ~R~~~Pl~KVi~~mRTN~IswnPeafnF~~--a~ED~nlY~~DmR~l~~ 263 (433)
T KOG0268|consen 217 LRQASPLKKVILTMRTNTICWNPEAFNFVA--ANEDHNLYTYDMRNLSR 263 (433)
T ss_pred cccCCccceeeeeccccceecCccccceee--ccccccceehhhhhhcc
Confidence 999999999988888899999997766666 88999999999987764
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.7e-20 Score=163.39 Aligned_cols=237 Identities=14% Similarity=0.218 Sum_probs=182.2
Q ss_pred eeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 170 LNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 170 i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
.+|+.|++ +.+||+| .+|.|.|||..|-.+.+.+. .|..+|++++||++|+.|++++.|..|.+||+..+.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 56899999 9999999 58999999999988877776 899999999999999999999999999999999999888877
Q ss_pred CCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccc---cCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 248 GHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGH---KSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 248 ~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h---~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
...+|+...|+| +.+++.-.+..-.+.++..+.+.+...... ...-.+..|.+.|+++++|...|.+.++|..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 678899999995 455555555556666665543211111110 1112233688999999999999999999999
Q ss_pred CCceeEEeccCC-CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-------cEE--EEee---CCCCEEEEEECCC
Q 014934 322 STQPVLKYCEHT-AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-------THL--SCMD---TGSQVCNLVWSKN 388 (415)
Q Consensus 322 ~~~~~~~~~~h~-~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-------~~~--~~~~---~~~~V~~l~~s~~ 388 (415)
+.+++..++-.. ..|+.+.++-.|+.++.-. .|+.||.|+++.- +.- +.+. ...+=.+++|+.+
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNt---sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINT---SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEec---CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 999988887555 7899999999998665543 7999999998731 111 1111 2334457899999
Q ss_pred CCeEEEEEecCCCcEEEEECCCCc
Q 014934 389 VNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
|.++++++ .....++||.-..+.
T Consensus 261 geYv~a~s-~~aHaLYIWE~~~Gs 283 (405)
T KOG1273|consen 261 GEYVCAGS-ARAHALYIWEKSIGS 283 (405)
T ss_pred ccEEEecc-ccceeEEEEecCCcc
Confidence 99999864 567789999976654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=161.40 Aligned_cols=202 Identities=21% Similarity=0.324 Sum_probs=154.2
Q ss_pred CCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCC-Ceee-EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCC
Q 014934 206 GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASR-CKRV-RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQ 280 (415)
Q Consensus 206 ~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~-~~~~-~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~ 280 (415)
...+.|.+|+||| ...+++.|+.||+|++|+++. +..+ +....|.++|.+++|+ +..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 5578999999999 556777899999999999976 3333 3455799999999998 689999999999999999998
Q ss_pred CccEEEeccccCCeEEEEEeCCCC--EEEEEeCCCcEEEEECCCCceeEEecc---------------------------
Q 014934 281 EDFVSKLSGHKSEVCGLKWSYDNR--ELASGGNDNRLFVWNQHSTQPVLKYCE--------------------------- 331 (415)
Q Consensus 281 ~~~~~~~~~h~~~V~~l~~spdg~--~lasg~~dg~I~iwd~~~~~~~~~~~~--------------------------- 331 (415)
+ +..+..|..+|.++.|-+... .|++|+.|.+|+.||.+...++.++.-
T Consensus 105 Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 105 Q--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred C--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 5 677889999999999987665 899999999999999998766555421
Q ss_pred ----------C----CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE--EEee-CC---------CCEEEEEE
Q 014934 332 ----------H----TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL--SCMD-TG---------SQVCNLVW 385 (415)
Q Consensus 332 ----------h----~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~--~~~~-~~---------~~V~~l~~ 385 (415)
+ +-.+++|+..+++... +.|+ .+|.+-+..+..+... ..++ |. ..|.+++|
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~-alGs--iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQDKDGF-ALGS--IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEecCCce-Eeee--ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 1 1134666666666533 4444 6777777777665221 1121 11 23778999
Q ss_pred CCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 386 s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+|....|++ .++||++.+||-..-.+|
T Consensus 260 hP~hgtlvT--aGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 260 HPVHGTLVT--AGSDGTFSFWDKDARTKL 286 (347)
T ss_pred ecccceEEE--ecCCceEEEecchhhhhh
Confidence 999999998 568999999997665544
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=164.19 Aligned_cols=243 Identities=20% Similarity=0.339 Sum_probs=189.0
Q ss_pred CCcceeEeecCC------CcEEEEE---cC-CeEEEEE-CCCCCeEEeEec--CCCCCeEEEEEcC-CCCeEEEEECCCc
Q 014934 166 DDFYLNLVDWSS------HNVLAVG---LG-NCVYLWN-ACSSKVTKLCDL--GIDDSVCSVGWAN-RNTHLAVGTSHGK 231 (415)
Q Consensus 166 ~~~~i~~l~ws~------~~~la~~---~d-~~V~iwd-~~~~~~~~~~~~--~~~~~V~~v~~sp-~g~~la~g~~dg~ 231 (415)
++..|+-+.|.+ ..+||+- .+ |...+.- .++|++-..+.+ +|++.|..++|+| +...||+|+.|.+
T Consensus 26 ddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~ 105 (472)
T KOG0303|consen 26 DDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTK 105 (472)
T ss_pred cceeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCce
Confidence 455577777765 2455553 22 2222222 234444332222 8999999999999 5678999999999
Q ss_pred EEEEECCCC-------eeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC
Q 014934 232 VQIWDASRC-------KRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY 301 (415)
Q Consensus 232 V~iwd~~~~-------~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp 301 (415)
|.||++..+ +.+..+.+|+.+|.-++|++ +.|++++.|.+|.+||+.+++. +..+. |...|.++.|+.
T Consensus 106 v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea-li~l~-hpd~i~S~sfn~ 183 (472)
T KOG0303|consen 106 VMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA-LITLD-HPDMVYSMSFNR 183 (472)
T ss_pred EEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce-eeecC-CCCeEEEEEecc
Confidence 999998543 45677889999999999994 8999999999999999999985 44455 999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCc-EEEEEEcCCCCcEEEEEc-CCCCCeEEEEECCC---CcEEEEeeC
Q 014934 302 DNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAA-VKAIAWSPHLHGLLASGG-GTADRCIRFWNTTT---NTHLSCMDT 376 (415)
Q Consensus 302 dg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~sp~~~~llasgg-g~~d~~I~iwd~~t---~~~~~~~~~ 376 (415)
||.+|++.+.|.+|+|||.++++.+..-.+|.+. -..+.|-.++. ++.+|- ...++.+-+||... .-.+.++++
T Consensus 184 dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt 262 (472)
T KOG0303|consen 184 DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDT 262 (472)
T ss_pred CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEecc
Confidence 9999999999999999999999999988788754 34566777776 666552 23578999998765 345677889
Q ss_pred CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 377 ~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
.+.|.---|.++...+..+ |-.|+.|+.|.+..-.
T Consensus 263 SnGvl~PFyD~dt~ivYl~-GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 263 SNGVLLPFYDPDTSIVYLC-GKGDSSIRYFEITNEP 297 (472)
T ss_pred CCceEEeeecCCCCEEEEE-ecCCcceEEEEecCCC
Confidence 9999988999998887766 8889999999987543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=162.19 Aligned_cols=156 Identities=21% Similarity=0.321 Sum_probs=120.1
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC------------------------------------eeeEEec--
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC------------------------------------KRVRTME-- 247 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~------------------------------------~~~~~l~-- 247 (415)
+|.+.|++++|+.||++||+++.|+.|+||+++.. ..+..+.
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 89999999999999999999999999999997531 1111110
Q ss_pred ---------------------CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCC
Q 014934 248 ---------------------GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR 304 (415)
Q Consensus 248 ---------------------~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 304 (415)
.|+..+-.+-.. +.+|++++.|..|.+||++ ++ .+..+......-...+.||+|+
T Consensus 164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~n~~aavSP~GR 241 (420)
T KOG2096|consen 164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSSNYDAAVSPDGR 241 (420)
T ss_pred ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc-eeeeeccccccccceeeCCCCc
Confidence 011122222111 3589999999999999998 43 5667776666677788999999
Q ss_pred EEEEEeCCCcEEEEECC---CC-----ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 305 ELASGGNDNRLFVWNQH---ST-----QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 305 ~lasg~~dg~I~iwd~~---~~-----~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
++|+++---.|+||.+- .| ..+..+++|+++|..++|+++.. -+++.+ .||.+++||+.
T Consensus 242 Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvS--kDG~wriwdtd 308 (420)
T KOG2096|consen 242 FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVS--KDGKWRIWDTD 308 (420)
T ss_pred EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEe--cCCcEEEeecc
Confidence 99999998999999962 22 34678889999999999999987 455555 89999999985
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-20 Score=162.88 Aligned_cols=203 Identities=21% Similarity=0.374 Sum_probs=165.5
Q ss_pred EecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC---eeeEEecCCCccEEEEEee----CCEEEEEeCCCcEEEE
Q 014934 203 CDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---KRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQR 275 (415)
Q Consensus 203 ~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~---~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~iw 275 (415)
+...|.+.|..+...--|++||+++.|++|+|+.++.. +.+.++.+|.++|..++|- +.+|++++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34478888998888888999999999999999999754 5678899999999999996 6899999999999999
Q ss_pred ECCCCC-ccEEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEECCCC---ceeEEeccCCCcEEEEEEcCC---CC
Q 014934 276 DIRAQE-DFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHST---QPVLKYCEHTAAVKAIAWSPH---LH 346 (415)
Q Consensus 276 d~~~~~-~~~~~~~~h~~~V~~l~~spd--g~~lasg~~dg~I~iwd~~~~---~~~~~~~~h~~~V~~l~~sp~---~~ 346 (415)
.-.++. ........|...|++++|.|. |-.||+++.||.|.|.+.++. ........|.-.|++++|.|. |.
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 987764 123456689999999999985 567999999999999998754 122234579999999999997 31
Q ss_pred ----------cEEEEEcCCCCCeEEEEECCCCcEE--EEe-eCCCCEEEEEECCCC----CeEEEEEecCCCcEEEEECC
Q 014934 347 ----------GLLASGGGTADRCIRFWNTTTNTHL--SCM-DTGSQVCNLVWSKNV----NELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 347 ----------~llasggg~~d~~I~iwd~~t~~~~--~~~-~~~~~V~~l~~s~~~----~~l~s~~g~~dg~I~vw~~~ 409 (415)
+-|++|| .|..|+||+...+.-+ ..+ .|...|..++|.|.- ..|++ ++.||++.||...
T Consensus 166 ~~~~~~~~~~krlvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS--~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS--CSQDGTVIIWTKD 241 (299)
T ss_pred ccccCcccccceeeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE--ecCCCcEEEEEec
Confidence 3488887 8999999999887422 223 367889999999975 45666 7899999999865
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=176.36 Aligned_cols=231 Identities=21% Similarity=0.305 Sum_probs=175.9
Q ss_pred CcEEEEE-cCCeEEEEECCCCCeE-----EeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE--ecCC
Q 014934 178 HNVLAVG-LGNCVYLWNACSSKVT-----KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT--MEGH 249 (415)
Q Consensus 178 ~~~la~~-~d~~V~iwd~~~~~~~-----~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~--l~~h 249 (415)
..+||++ .+|.|.++|....... ....+.|...|..+.|.|....|++++.|.++++||+++.+++.. +.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 5789999 4689999998664332 111237889999999999667899999999999999999988877 8899
Q ss_pred CccEEEEEee---CCEEEEEeCCCcEEEEECCCCCc--------------------------cEEEeccccCCeEE---E
Q 014934 250 RLRVGALAWS---SSLLSSGSRDKSILQRDIRAQED--------------------------FVSKLSGHKSEVCG---L 297 (415)
Q Consensus 250 ~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~--------------------------~~~~~~~h~~~V~~---l 297 (415)
...|.+++|. +..|++|++||.|.|||++.... -......+...|.+ +
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 9999999997 58999999999999999985430 01122344445555 5
Q ss_pred EEeCCCCEEEEEeC-CCcEEEEECCCCceeE--------EeccC---CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 298 KWSYDNRELASGGN-DNRLFVWNQHSTQPVL--------KYCEH---TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 298 ~~spdg~~lasg~~-dg~I~iwd~~~~~~~~--------~~~~h---~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
.+..|...||+++. |+.|+|||++...... .+..| ...+.++.....|.+|+|++ .|+.|++||+
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC---tD~sIy~ynm 300 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC---TDNSIYFYNM 300 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe---cCCcEEEEec
Confidence 56678999999887 9999999998753322 22223 34577888888889999999 5999999999
Q ss_pred CCCc--EEEEeeC---CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 366 TTNT--HLSCMDT---GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 366 ~t~~--~~~~~~~---~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.+-. ++..+.+ ...-..-..+|++.+|++ |+.|...++|.+.+.+.
T Consensus 301 ~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S--gSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 301 RSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS--GSSDEQAYIWVVSSPEA 351 (720)
T ss_pred cccCcCchhhccCcccceeeeeeecCCCCceEec--cCCCcceeeeeecCccC
Confidence 8643 2233221 233344567999999999 88999999999987653
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-19 Score=176.98 Aligned_cols=220 Identities=18% Similarity=0.282 Sum_probs=180.7
Q ss_pred CcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.-.+.+++-..+.+++++.+++|.+|....++...++. ..+-++.+++++.+|+++|.|+.|-.|++.++.+......+
T Consensus 56 g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~-Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l 134 (933)
T KOG1274|consen 56 GELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILA-RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL 134 (933)
T ss_pred CceeEEEeecccceEEeeccceEEEeeCCCCCccceee-eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee
Confidence 33466676666777887889999999998887654443 44578999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEecc-------c-cCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSG-------H-KSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-------h-~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
.+|.++|.++.++ +++|++.+.||.|++||+..+. +...+.+ - ...++.++|+|+|..||..+.|+.|.
T Consensus 135 rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vk 213 (933)
T KOG1274|consen 135 RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVK 213 (933)
T ss_pred cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEE
Confidence 9999999999999 5899999999999999999775 2333221 1 34567799999999999999999999
Q ss_pred EEECCCCceeEEecc--CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 317 VWNQHSTQPVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 317 iwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
+|+..++.....+.. +...+..+.|+|.|.+| |+++ .||.|.|||+.+.+. ......||+++|.|+.+.+-.
T Consensus 214 vy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi-AAs~--~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 214 VYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI-AAST--LDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred EEccCCceeheeecccccccceEEEEEcCCCcEE-eeec--cCCcEEEEecccchh---ccccceeEEEecCCCCCeeEE
Confidence 999999988877753 44559999999999854 5544 899999999998332 234678999999999887655
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-18 Score=163.43 Aligned_cols=230 Identities=21% Similarity=0.341 Sum_probs=181.0
Q ss_pred cceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC------
Q 014934 168 FYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC------ 240 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~------ 240 (415)
-+|.|+.|.+ ++++..-++|.|.||+..+.+..+... .|.+.|.+++...+|.+|- |+.|..|..||-.-.
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~e 324 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETE 324 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee-cCccceEEecccccccccccc
Confidence 5799999999 677777789999999998888887776 8999999999999998666 999999999983100
Q ss_pred -----eeeE-----------------------------EecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccE
Q 014934 241 -----KRVR-----------------------------TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFV 284 (415)
Q Consensus 241 -----~~~~-----------------------------~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~ 284 (415)
..++ ...+|......++.++ +.+++++.|+.+++|+ ..+ +.
T Consensus 325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-~~ 401 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-LE 401 (626)
T ss_pred CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc-ee
Confidence 0011 1124666666777663 6899999999999999 222 22
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE
Q 014934 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 285 ~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd 364 (415)
- -.-...++.++.|+|.| .+|.|...|...|.|.++...+..-.. +..+.+++|+|+|. +||.|+ .|+.|++|-
T Consensus 402 w-t~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs--~d~~iyiy~ 475 (626)
T KOG2106|consen 402 W-TKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGA-FLAVGS--HDNHIYIYR 475 (626)
T ss_pred E-EEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCC-EEEEec--CCCeEEEEE
Confidence 1 22234688999999999 999999999999999999766655545 88999999999998 777776 999999999
Q ss_pred CCCCcE-EEEee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 365 TTTNTH-LSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 365 ~~t~~~-~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+..... ...+. ++++|+.+.|++|+++|.+ .+-|-.|..| .++.
T Consensus 476 Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~--~S~d~eiLyW-~~~~ 522 (626)
T KOG2106|consen 476 VSANGRKYSRVGKCSGSPITHLDWSSDSQFLVS--NSGDYEILYW-KPSE 522 (626)
T ss_pred ECCCCcEEEEeeeecCceeEEeeecCCCceEEe--ccCceEEEEE-cccc
Confidence 876443 33332 5689999999999999999 5568899999 4443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.8e-19 Score=156.05 Aligned_cols=239 Identities=18% Similarity=0.340 Sum_probs=183.6
Q ss_pred CCCCCCcceeEeecCCC------cEEEEEcCCeEEEEECCC--CCeEEeEe------cCCCCCeEEEEEcC-CCCeEEEE
Q 014934 162 PALQDDFYLNLVDWSSH------NVLAVGLGNCVYLWNACS--SKVTKLCD------LGIDDSVCSVGWAN-RNTHLAVG 226 (415)
Q Consensus 162 ~~l~~~~~i~~l~ws~~------~~la~~~d~~V~iwd~~~--~~~~~~~~------~~~~~~V~~v~~sp-~g~~la~g 226 (415)
+.+...|.++.+-|.|. .+||+ .+..+++|.+.. +++..... ..+..+++++.|+. +.++|.+.
T Consensus 91 a~fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS 169 (364)
T KOG0290|consen 91 ANFDHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS 169 (364)
T ss_pred CCCCCCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEee
Confidence 33556678889999983 24444 477999999874 22211111 14467899999997 67899999
Q ss_pred ECCCcEEEEECCCCe---eeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccc--cCCeEEEE
Q 014934 227 TSHGKVQIWDASRCK---RVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGH--KSEVCGLK 298 (415)
Q Consensus 227 ~~dg~V~iwd~~~~~---~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~l~ 298 (415)
+-|-+..|||++++. ....+-.|...|..++|.. +.|++.+.||.++++|+|..++....+... ..+...|+
T Consensus 170 SiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLs 249 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLS 249 (364)
T ss_pred cccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeec
Confidence 999999999999863 3556778999999999983 799999999999999999988654444432 45778899
Q ss_pred EeC-CCCEEEEEe-CCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc------
Q 014934 299 WSY-DNRELASGG-NDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT------ 369 (415)
Q Consensus 299 ~sp-dg~~lasg~-~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~------ 369 (415)
|++ |-+++|+-. +.+.|.|.|++.. .++.++++|++.|++|+|.|+....++++| .|..+.+||+.+.-
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG--DD~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG--DDCQALIWDLQQMPRENGED 327 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC--CcceEEEEecccccccCCCC
Confidence 997 567888744 4567999999864 788999999999999999999999999998 89999999997632
Q ss_pred EEEEeeCCCCEEEEEECC-CCCeEEEEEecCCCcEEEE
Q 014934 370 HLSCMDTGSQVCNLVWSK-NVNELVSTHGYSQNQIIVW 406 (415)
Q Consensus 370 ~~~~~~~~~~V~~l~~s~-~~~~l~s~~g~~dg~I~vw 406 (415)
++..+..+..|..+.|++ ...+++.+. ++++.+-
T Consensus 328 Pilay~a~~EVNqi~Ws~~~~Dwiai~~---~kkleiL 362 (364)
T KOG0290|consen 328 PILAYTAGGEVNQIQWSSSQPDWIAICF---GKKLEIL 362 (364)
T ss_pred chhhhhccceeeeeeecccCCCEEEEEe---cCeeeEE
Confidence 233334678899999995 566777743 3455554
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=173.37 Aligned_cols=118 Identities=18% Similarity=0.374 Sum_probs=102.1
Q ss_pred CeEEEEEeC-CCCEEEEEeCCCcEEEEECCCC-------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE
Q 014934 293 EVCGLKWSY-DNRELASGGNDNRLFVWNQHST-------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 293 ~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd 364 (415)
.|+.+.|.| |...||+++.||.|++|.+..+ .+...+..|...|+.+.|+|-...+|++++ .|.+|++||
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as--yd~Ti~lWD 706 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS--YDSTIELWD 706 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh--ccceeeeee
Confidence 366778888 6778999999999999998653 456677889999999999998888999988 999999999
Q ss_pred CCCCcEEEEe-eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 365 TTTNTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 365 ~~t~~~~~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+.+++....+ .|..+|.+++|||+|+.+++ -..||+|+||+-.+.++-
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~At--VcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIAT--VCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceee--eecCceEEEeCCCCCCCc
Confidence 9999876665 47899999999999999999 568999999998887653
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-18 Score=154.46 Aligned_cols=226 Identities=23% Similarity=0.371 Sum_probs=172.8
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEec----CCCCCeEEEEEcCC----CCeEEEEECCCcEEEEECCCCeeeEEecCC
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDL----GIDDSVCSVGWANR----NTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~----~~~~~V~~v~~sp~----g~~la~g~~dg~V~iwd~~~~~~~~~l~~h 249 (415)
..++|+..++.+.+|+....-..++++. ++.+....++|+-+ ..++|+|+.-|.|+|.|+.++++...+.+|
T Consensus 55 ~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~gh 134 (385)
T KOG1034|consen 55 PQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGH 134 (385)
T ss_pred CceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceecc
Confidence 3577777888999998765443333322 46778888999864 348999999999999999999999999999
Q ss_pred CccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEe---ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 250 RLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKL---SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 250 ~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
...|+.+.++ +++++++|.|..|++|++++.. ++..+ .+|..+|.++.|+++|.+|+++|.|..|++|++...
T Consensus 135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~-Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV-CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred CccchhhhcCCCCCcEEEEecCCceEEEEeccCCe-EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 9999999998 4799999999999999999987 45544 589999999999999999999999999999999721
Q ss_pred c---------------------------eeE-EeccCC------------------------------------------
Q 014934 324 Q---------------------------PVL-KYCEHT------------------------------------------ 333 (415)
Q Consensus 324 ~---------------------------~~~-~~~~h~------------------------------------------ 333 (415)
+ +.. +-.-|.
T Consensus 214 ~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es 293 (385)
T KOG1034|consen 214 EFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPES 293 (385)
T ss_pred HHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCcc
Confidence 0 000 000011
Q ss_pred ------------CcEEE--EEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE--Ee---eCCCCEEEEEECCCCCeEEE
Q 014934 334 ------------AAVKA--IAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS--CM---DTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 334 ------------~~V~~--l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~--~~---~~~~~V~~l~~s~~~~~l~s 394 (415)
..|+- .+|.|.++ .||.|+ +.|.|.+||+...++.. ++ ..+..|...+|+.|+..|+.
T Consensus 294 ~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gn--q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~ 370 (385)
T KOG1034|consen 294 ATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGN--QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVL 370 (385)
T ss_pred ceeeeeEeccCccceEEEEEeecHHHH-HHhhcc--CCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEE
Confidence 11222 23445554 566665 89999999998766521 11 24577999999999999998
Q ss_pred EEecCCCcEEEEECC
Q 014934 395 THGYSQNQIIVWRYP 409 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~ 409 (415)
-.+|+.|.-||.-
T Consensus 371 --vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 371 --VCDDGTVWRWDRV 383 (385)
T ss_pred --EeCCCcEEEEEee
Confidence 5689999999853
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-19 Score=171.76 Aligned_cols=236 Identities=17% Similarity=0.309 Sum_probs=178.8
Q ss_pred EeecCC-CcEEEE-EcCCeEEEEECCCCC----eEEeEecCCCCCeEEEEEcCC-----------CCeEEEEECCCcEEE
Q 014934 172 LVDWSS-HNVLAV-GLGNCVYLWNACSSK----VTKLCDLGIDDSVCSVGWANR-----------NTHLAVGTSHGKVQI 234 (415)
Q Consensus 172 ~l~ws~-~~~la~-~~d~~V~iwd~~~~~----~~~~~~~~~~~~V~~v~~sp~-----------g~~la~g~~dg~V~i 234 (415)
.+.|++ ...|.+ -.|..+||||+.+-+ +...+ -|...|.+|.--|- ...+.+++.||+|++
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~l--yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSML--YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeee--eccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 566887 444444 468899999998743 22222 57788888776551 124889999999999
Q ss_pred EECCCCeeeEE-----e--------------------------------cCCCccEEEEEee--CCEEEEEeCCCcEEEE
Q 014934 235 WDASRCKRVRT-----M--------------------------------EGHRLRVGALAWS--SSLLSSGSRDKSILQR 275 (415)
Q Consensus 235 wd~~~~~~~~~-----l--------------------------------~~h~~~V~~l~~~--~~~l~sgs~dg~I~iw 275 (415)
||+..+..-.+ + -+....+.+++.+ +.+|++|.+-|+|++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 99864211000 0 0123457888887 5799999999999999
Q ss_pred ECCCCCccEEEeccccCCeEEEEEeC---CCCEEEEEeCCCcEEEEECCC-CceeEEeccCCCcEEEEEEcCCC--C---
Q 014934 276 DIRAQEDFVSKLSGHKSEVCGLKWSY---DNRELASGGNDNRLFVWNQHS-TQPVLKYCEHTAAVKAIAWSPHL--H--- 346 (415)
Q Consensus 276 d~~~~~~~~~~~~~h~~~V~~l~~sp---dg~~lasg~~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~sp~~--~--- 346 (415)
|+..-+ ....+.+|..+|.||.++- ..++||+++.|..|+|||+.. ..+++++.+|...|+++.|.-.| .
T Consensus 487 ~Lq~l~-~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 487 DLQELE-YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred Eehhhh-hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 998876 5677889999999999984 457899999999999999853 45667777777777777665433 1
Q ss_pred -------------------------------------------cEEEEEcCCCCCeEEEEECCCCcEEEEee----CCCC
Q 014934 347 -------------------------------------------GLLASGGGTADRCIRFWNTTTNTHLSCMD----TGSQ 379 (415)
Q Consensus 347 -------------------------------------------~llasggg~~d~~I~iwd~~t~~~~~~~~----~~~~ 379 (415)
.++++++ .|+.|+|||+.+|+..+.++ +.+.
T Consensus 566 scGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c--QDrnirif~i~sgKq~k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 566 SCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC--QDRNIRIFDIESGKQVKSFKGSRDHEGD 643 (1080)
T ss_pred eccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe--cccceEEEeccccceeeeecccccCCCc
Confidence 1344444 89999999999999999886 4466
Q ss_pred EEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 380 V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
...+...|.|.||++ .++|.+|.++||-+++.|
T Consensus 644 lIKv~lDPSgiY~at--Scsdktl~~~Df~sgEcv 676 (1080)
T KOG1408|consen 644 LIKVILDPSGIYLAT--SCSDKTLCFVDFVSGECV 676 (1080)
T ss_pred eEEEEECCCccEEEE--eecCCceEEEEeccchhh
Confidence 888999999999999 678999999999998765
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.5e-19 Score=156.03 Aligned_cols=195 Identities=25% Similarity=0.347 Sum_probs=162.5
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCe-EEeEec----CCCCCeEEEEEcC--CCCeEEEEECCCcEEEEECCCC
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKV-TKLCDL----GIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~-~~~~~~----~~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~~~ 240 (415)
.++|+-|.| +.-+++-.++.|.+|++..+.. ...+.. ++....++-+|+| +|+.+++ ..|++++.||+++.
T Consensus 125 ~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTM 203 (370)
T ss_pred ceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccch
Confidence 689999999 6677777799999999987754 222211 3456788899998 7788876 57889999999988
Q ss_pred eeeEEec-CCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC-CCEEEEEeCCCcE
Q 014934 241 KRVRTME-GHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD-NRELASGGNDNRL 315 (415)
Q Consensus 241 ~~~~~l~-~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~lasg~~dg~I 315 (415)
++...++ .|...|..+.|+| .+|++|+.||.|++||.|..+.++..+.+|...|.++.|+|. .+++++|+.|..|
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCcee
Confidence 7666554 7889999999996 589999999999999999998889999999999999999994 5677899999999
Q ss_pred EEEECCCC-----------------------------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 316 FVWNQHST-----------------------------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 316 ~iwd~~~~-----------------------------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
.+|...+- ..+.++..|...|.+++|+....+++|+-+ .||.+.|=++.
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS--YDGRviIs~V~ 361 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS--YDGRVIISSVP 361 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec--cCceEEeecCC
Confidence 99976320 124567889999999999999999999998 99999886664
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-19 Score=168.00 Aligned_cols=219 Identities=16% Similarity=0.253 Sum_probs=179.5
Q ss_pred CCCcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 165 QDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 165 ~~~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
...++|+|..++ -.++++|.+++|+|||++...+.+.+. +|.+.|++|.+.....+||+++..|.|.|..+.++....
T Consensus 80 d~~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~lk-dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt 157 (673)
T KOG4378|consen 80 DNAFCVACASQS-LYEISGGQSGCVKIWDLRAKLIHRFLK-DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT 157 (673)
T ss_pred chHHHHhhhhcc-eeeeccCcCceeeehhhHHHHHhhhcc-CCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc
Confidence 356788888877 344555578999999999666666655 899999999999999999999999999999999988777
Q ss_pred EecCC-CccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEE
Q 014934 245 TMEGH-RLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWN 319 (415)
Q Consensus 245 ~l~~h-~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd 319 (415)
.|... ...|.-+.+++ .+|.+++.+|.|.+||+............|..+..+|+|+| +..+|++.|.|.+|.+||
T Consensus 158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 77644 34455788883 68889999999999999988876777789999999999999 556788999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-EEEEee-CCCCEEEEEECCCC
Q 014934 320 QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCMD-TGSQVCNLVWSKNV 389 (415)
Q Consensus 320 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-~~~~~~-~~~~V~~l~~s~~~ 389 (415)
....+....+ ....+...++|.++|. +|+.|. ..|.|..||++.-+ ++..+. |...|++++|-+.-
T Consensus 238 ~~s~~s~~~l-~y~~Plstvaf~~~G~-~L~aG~--s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 238 IRSQASTDRL-TYSHPLSTVAFSECGT-YLCAGN--SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccccccccee-eecCCcceeeecCCce-EEEeec--CCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9987776666 4566889999999997 555554 89999999998754 444443 67779999998764
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-19 Score=164.04 Aligned_cols=199 Identities=22% Similarity=0.288 Sum_probs=165.7
Q ss_pred CCCCeEEEEEcCCC--CeEEEEECCCcEEEEECCCC----eeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEEC
Q 014934 207 IDDSVCSVGWANRN--THLAVGTSHGKVQIWDASRC----KRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDI 277 (415)
Q Consensus 207 ~~~~V~~v~~sp~g--~~la~g~~dg~V~iwd~~~~----~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~ 277 (415)
+.+.|++++|+|.. +.+|+|...|.|-+||+.+. ..+..+..|.++|.+|.|+| ..+++.|.||+|++-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 46899999999954 58999999999999999532 34556788999999999984 68999999999999999
Q ss_pred CCCCc-cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-eEEeccCCCcEEEEEEcCCCCcEEEEEcCC
Q 014934 278 RAQED-FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP-VLKYCEHTAAVKAIAWSPHLHGLLASGGGT 355 (415)
Q Consensus 278 ~~~~~-~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~sp~~~~llasggg~ 355 (415)
....- .+.........++++.|+.+...++.|++=|.+.+||++++.. ...+.-|...|..++++|...++++++|
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s-- 342 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS-- 342 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc--
Confidence 87641 1222333455688899998888888888888999999998754 6667779999999999999999999998
Q ss_pred CCCeEEEEECCCC--c---EEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 356 ADRCIRFWNTTTN--T---HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 356 ~d~~I~iwd~~t~--~---~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.|++.+|||++.- + .+..+.|...|.++.|||.+-.|+++ +.|+.|+|||..
T Consensus 343 ~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT--~~D~~IRv~dss 399 (498)
T KOG4328|consen 343 LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTT--CQDNEIRVFDSS 399 (498)
T ss_pred cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEee--ccCCceEEeecc
Confidence 9999999999852 2 36677888999999999998888885 478999999984
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-18 Score=151.38 Aligned_cols=220 Identities=19% Similarity=0.329 Sum_probs=170.7
Q ss_pred eEEEEECCCCC---------eEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee-eEEec-----CCCcc
Q 014934 188 CVYLWNACSSK---------VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR-VRTME-----GHRLR 252 (415)
Q Consensus 188 ~V~iwd~~~~~---------~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~-~~~l~-----~h~~~ 252 (415)
.+.||.+.... ++..+...+-+.|.||.|.|++..+|+-. |..|.+|++..+.. +..+. +|...
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ 172 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHS 172 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccce
Confidence 57899875421 22222223456899999999999998755 78899999987765 33332 35667
Q ss_pred EEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCE-EEEEeCCCcEEEEECCC-CceeE
Q 014934 253 VGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWNQHS-TQPVL 327 (415)
Q Consensus 253 V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~-lasg~~dg~I~iwd~~~-~~~~~ 327 (415)
.++-+|+| ..-+....|+++..||+|+..+....-.+|.+.|..+.|+|+.++ ||+|+.||.|+|||.+. ..+++
T Consensus 173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence 78888985 233444578999999999988766777799999999999998764 78899999999999985 46899
Q ss_pred EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-----------------------------EEEEee-CC
Q 014934 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-----------------------------HLSCMD-TG 377 (415)
Q Consensus 328 ~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-----------------------------~~~~~~-~~ 377 (415)
.+.+|...|.++.|+|.-..|+.+|| .|..|.+|....-. .+.+++ |.
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~--SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGG--SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecC--CCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence 99999999999999999888999987 89999999764210 122232 66
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
..|++++||.-..+++++- +-||.+.|=+++..
T Consensus 331 DSVY~~aWSsadPWiFASL-SYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASL-SYDGRVIISSVPRF 363 (370)
T ss_pred cceEEEeeccCCCeeEEEe-ccCceEEeecCChh
Confidence 7899999999999988864 56899998887653
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-17 Score=147.62 Aligned_cols=243 Identities=16% Similarity=0.291 Sum_probs=184.4
Q ss_pred CcceeEeecCC----CcEEEEEc-----CCeEEEE--ECCCCCeEEeEecCCCCCeEEEEEcCCC-----CeEEEEECCC
Q 014934 167 DFYLNLVDWSS----HNVLAVGL-----GNCVYLW--NACSSKVTKLCDLGIDDSVCSVGWANRN-----THLAVGTSHG 230 (415)
Q Consensus 167 ~~~i~~l~ws~----~~~la~~~-----d~~V~iw--d~~~~~~~~~~~~~~~~~V~~v~~sp~g-----~~la~g~~dg 230 (415)
.+.+..++|+. ...||+|+ .+.|.|. +..+++.+..-.++|.-+++.+-|.|+. ++||+. +-
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D 121 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SD 121 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cC
Confidence 45678899993 66888884 2556654 4556677766667899999999999975 356653 33
Q ss_pred cEEEEECCCCe----eeEEe-----cCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCC--ccEEEeccccCCeEE
Q 014934 231 KVQIWDASRCK----RVRTM-----EGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKSEVCG 296 (415)
Q Consensus 231 ~V~iwd~~~~~----~~~~l-----~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~ 296 (415)
.+++|.+...+ +...+ ..+.+++++..|+ ++++.+.+-|.+..|||++.+. .....+.+|..+|..
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~D 201 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYD 201 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeE
Confidence 79999986321 11112 2467899999998 7999999999999999999863 245678899999999
Q ss_pred EEEeCCC-CEEEEEeCCCcEEEEECCCCceeEE-ecc--CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEE
Q 014934 297 LKWSYDN-RELASGGNDNRLFVWNQHSTQPVLK-YCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THL 371 (415)
Q Consensus 297 l~~spdg-~~lasg~~dg~I~iwd~~~~~~~~~-~~~--h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~ 371 (415)
++|...+ +.||+.|.||.|++||++..+--.. ++. ...+...++|++...+++|+-. .....|.|.|++.. ..+
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~-~dS~~V~iLDiR~P~tpv 280 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA-MDSNKVVILDIRVPCTPV 280 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhh-cCCceEEEEEecCCCcce
Confidence 9999854 5789999999999999987643222 222 2467889999999999998875 24567999999864 445
Q ss_pred EEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 372 SCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 372 ~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
..+. |.+.|.+++|.|....-+++ +++|.+..+||++++-+
T Consensus 281 a~L~~H~a~VNgIaWaPhS~~hict-aGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 281 ARLRNHQASVNGIAWAPHSSSHICT-AGDDCQALIWDLQQMPR 322 (364)
T ss_pred ehhhcCcccccceEecCCCCceeee-cCCcceEEEEecccccc
Confidence 5554 88999999999987655555 56899999999988743
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-17 Score=159.97 Aligned_cols=235 Identities=20% Similarity=0.281 Sum_probs=186.5
Q ss_pred CCCcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 165 QDDFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 165 ~~~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
..+-.+..++|.+ ++++.++.+|.|.-||+.+++.....+ ...+.|.+++.+|.+..+++|+.||.+.+++...++..
T Consensus 67 ~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~ 145 (691)
T KOG2048|consen 67 PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT 145 (691)
T ss_pred CCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE
Confidence 4466799999997 889999999999999999999888776 55789999999999999999999998888887776543
Q ss_pred --EEecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEE----ecc----ccCCeEEEEEeCCCCEEEEEeC
Q 014934 244 --RTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSK----LSG----HKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 244 --~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~----~~~----h~~~V~~l~~spdg~~lasg~~ 311 (415)
+.+....++|.+++|++ ..+++|+.||.|++||...+.. ++. +.+ ...-|+++.+-.+ ..||+|..
T Consensus 146 ~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS 223 (691)
T KOG2048|consen 146 YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDS 223 (691)
T ss_pred EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeec-CcEEEecC
Confidence 34455679999999995 5689999999999999998874 221 111 2223677777644 47899999
Q ss_pred CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE-----EeeCCCCEEEEEEC
Q 014934 312 DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS-----CMDTGSQVCNLVWS 386 (415)
Q Consensus 312 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~-----~~~~~~~V~~l~~s 386 (415)
-|.|.+||...+..++.+..|.+.|.+++..+++..++.+| .|+.|.-+...+.+.-. ...|...|.+++..
T Consensus 224 ~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG---vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~ 300 (691)
T KOG2048|consen 224 AGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG---VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVI 300 (691)
T ss_pred CceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc---CCCceEEEEecCCccceeeeccccCCcccceeeeee
Confidence 99999999999999999999999999999999987555554 79998888877764311 11266778888888
Q ss_pred CCCCeEEEEEecCCCcEEEEECC
Q 014934 387 KNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 387 ~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
++ .|++ |+.|..+.+-...
T Consensus 301 ~~--~l~s--gG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 301 EN--ALIS--GGRDFTLAICSSR 319 (691)
T ss_pred cc--eEEe--cceeeEEEEcccc
Confidence 77 5666 7788777765443
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=165.23 Aligned_cols=249 Identities=17% Similarity=0.297 Sum_probs=188.2
Q ss_pred CCCceeccCCCCCCCcceeEeecCC--CcEEEEE-cCCeEEEEECCCCCeE-----EeEecCCCCCeEEEEEcCCC--Ce
Q 014934 153 RSPYKILDAPALQDDFYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSKVT-----KLCDLGIDDSVCSVGWANRN--TH 222 (415)
Q Consensus 153 ~~p~~~ld~~~l~~~~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~-----~~~~~~~~~~V~~v~~sp~g--~~ 222 (415)
..|..+++.+. .+.|+.++| .++|++| .+|.|.+||+..+... ......|.++|+.+.|..+. .-
T Consensus 233 ~~Pe~~~~~~s-----~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~ 307 (555)
T KOG1587|consen 233 NTPELVLESPS-----EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTE 307 (555)
T ss_pred CCceEEEecCC-----ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCc
Confidence 56666666643 488999999 6777777 4799999999876541 22223788999999998754 44
Q ss_pred EEEEECCCcEEEEECCCCee-eE-----Eec------CCCccEEEEEee---CCEEEEEeCCCcEEEEECC---CCC---
Q 014934 223 LAVGTSHGKVQIWDASRCKR-VR-----TME------GHRLRVGALAWS---SSLLSSGSRDKSILQRDIR---AQE--- 281 (415)
Q Consensus 223 la~g~~dg~V~iwd~~~~~~-~~-----~l~------~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~---~~~--- 281 (415)
+++++.||.|..|+++.-.. +. ... .-...+++++|. +..++.|+.+|.|..-+-. ...
T Consensus 308 f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~ 387 (555)
T KOG1587|consen 308 FFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVS 387 (555)
T ss_pred eEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccc
Confidence 99999999999998764321 11 111 123467888887 6899999999999873322 222
Q ss_pred -ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC-CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCe
Q 014934 282 -DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH-STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC 359 (415)
Q Consensus 282 -~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~-~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~ 359 (415)
+....+..|.+.|.++.++|-+..++..+.|..|+||... ...++..+..+...|++++|||....+++++. .||.
T Consensus 388 ~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d--~~G~ 465 (555)
T KOG1587|consen 388 YKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD--GDGN 465 (555)
T ss_pred ccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc--CCCc
Confidence 1233556788999999999977665554449999999988 77899999888889999999999998999987 7999
Q ss_pred EEEEECCCC--cEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 360 IRFWNTTTN--THLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 360 I~iwd~~t~--~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
|.+||+... .++.+.. .....+.+.|++.|+.|++ |...|.+.+|+++.
T Consensus 466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lav--Gd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAV--GDANGTTHILKLSE 517 (555)
T ss_pred eehhhhhccccCCcccccccccccceeecCCCCcEEEE--ecCCCcEEEEEcCc
Confidence 999999754 3344443 3445667889999999999 99999999999963
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.2e-18 Score=152.30 Aligned_cols=188 Identities=20% Similarity=0.327 Sum_probs=156.3
Q ss_pred CeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee----CCEEEEEeCCCcEEEEECCCCCcc-EEEecccc-CCe
Q 014934 221 THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQEDF-VSKLSGHK-SEV 294 (415)
Q Consensus 221 ~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~h~-~~V 294 (415)
..+|++...|.|++||..+++.+..++++...+..+.|. ++.+.+|+.||+|++||+|...+. ...+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 579999999999999999999999999999999999986 589999999999999999987643 33344454 466
Q ss_pred EEEEEeCCCCEEEEEe----CCCcEEEEECCCCce-eEEe-ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC
Q 014934 295 CGLKWSYDNRELASGG----NDNRLFVWNQHSTQP-VLKY-CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (415)
Q Consensus 295 ~~l~~spdg~~lasg~----~dg~I~iwd~~~~~~-~~~~-~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~ 368 (415)
.+++.+-.++++++|. .|-.|.+||++..+. +..+ +.|...|++|.|+|....+|++|+ .||.|.+||+...
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS--vDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS--VDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec--ccceEEeeecCCC
Confidence 7777777888898875 366799999998765 5444 479999999999999999999998 9999999999754
Q ss_pred ----cEEEEeeCCCCEEEEEECCCC--CeEEEEEecCCCcEEEEECCCCcc
Q 014934 369 ----THLSCMDTGSQVCNLVWSKNV--NELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 369 ----~~~~~~~~~~~V~~l~~s~~~--~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.++..+.+++.|..+.|..++ +....+ ..+.+.+|+++.+..
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT---H~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT---HMETFAIYELEDGSE 246 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEE---ccCceeEEEccCCCh
Confidence 356677889999999999988 655554 467899999987754
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=151.82 Aligned_cols=187 Identities=16% Similarity=0.282 Sum_probs=141.9
Q ss_pred cEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC--CCCeEEEEECCCcEEEEECCCCeeeEE--ecCCC-cc
Q 014934 179 NVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRCKRVRT--MEGHR-LR 252 (415)
Q Consensus 179 ~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~~~~~~~~--l~~h~-~~ 252 (415)
+.+|++ +.+.|++||..+++..+.+. ++...+..+.|.. .+..+.+|+.||+|++||++....+.. +..+. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK-GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec-CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 456777 57999999999999888887 7788888999987 457889999999999999987655443 34454 46
Q ss_pred EEEEEee--CCEEEEEe----CCCcEEEEECCCCCccE-EEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCc
Q 014934 253 VGALAWS--SSLLSSGS----RDKSILQRDIRAQEDFV-SKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 253 V~~l~~~--~~~l~sgs----~dg~I~iwd~~~~~~~~-~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~~ 324 (415)
..+++-+ .+++++|. .|-.+.+||+|...+.+ .....|...|++++|+| +.++|++|+.||.|.|||++...
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 7777775 56777775 35679999999988644 44568999999999999 67899999999999999997542
Q ss_pred ---eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC
Q 014934 325 ---PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (415)
Q Consensus 325 ---~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~ 368 (415)
.+...-.|...|..+.|...+-.-+.+-. ......+|+++.+
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clT--H~Etf~~~ele~~ 244 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLT--HMETFAIYELEDG 244 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEE--ccCceeEEEccCC
Confidence 22233367777888888877622233332 5778888887654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-16 Score=142.64 Aligned_cols=229 Identities=15% Similarity=0.240 Sum_probs=178.1
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCC--cEEEEECCCCeeeEE
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHG--KVQIWDASRCKRVRT 245 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg--~V~iwd~~~~~~~~~ 245 (415)
++.+.|+. ..+|++|....-++|+...-.. .... .....|..+-|+ ..++|..+.+. .+++++.+....+..
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k--~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGYKIFSCSPFEK--CFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred eeeeeeccceeEEEccCCCceeEEecCchHH--hhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEEE
Confidence 55666887 6789999888888888765433 1111 112234444444 45666665543 489999988777766
Q ss_pred ecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEec---cccCCeEEEEEeCCCCEEEEE--eCCCcEEEEEC
Q 014934 246 MEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS---GHKSEVCGLKWSYDNRELASG--GNDNRLFVWNQ 320 (415)
Q Consensus 246 l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~spdg~~lasg--~~dg~I~iwd~ 320 (415)
+. ....|.++.++.+.|+++-.+. |+|||++... .++++. .+...++++++++.+.+||-- ...|.|.|||+
T Consensus 84 ~~-fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 84 IF-FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMK-LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred Ee-cCCceEEEEEccceEEEEEccc-EEEEecccce-eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 65 5677999999988888876665 9999999987 455544 466678888888888899873 34689999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCe-EEEEECCCCcEEEEeeCC---CCEEEEEECCCCCeEEEEE
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC-IRFWNTTTNTHLSCMDTG---SQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~-I~iwd~~t~~~~~~~~~~---~~V~~l~~s~~~~~l~s~~ 396 (415)
.+-+++..+..|.+.+.+++|+++|. +||+++ +.|+ |||+.+.+|+.+.++.-+ ..|++++|++++++|++
T Consensus 161 ~nl~~v~~I~aH~~~lAalafs~~G~-llATAS--eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~-- 235 (391)
T KOG2110|consen 161 INLQPVNTINAHKGPLAALAFSPDGT-LLATAS--EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA-- 235 (391)
T ss_pred ccceeeeEEEecCCceeEEEECCCCC-EEEEec--cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE--
Confidence 99999999999999999999999997 999987 5554 899999999999999755 46889999999999988
Q ss_pred ecCCCcEEEEECCC
Q 014934 397 GYSQNQIIVWRYPT 410 (415)
Q Consensus 397 g~~dg~I~vw~~~s 410 (415)
.++.++|+||++..
T Consensus 236 sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 236 SSNTETVHIFKLEK 249 (391)
T ss_pred ecCCCeEEEEEecc
Confidence 45778999999865
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-17 Score=150.63 Aligned_cols=237 Identities=24% Similarity=0.339 Sum_probs=173.5
Q ss_pred ceeEeecCC--CcEEEEE-cCCeEEEEECCCCC-------eEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC
Q 014934 169 YLNLVDWSS--HNVLAVG-LGNCVYLWNACSSK-------VTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA 237 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~-------~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~ 237 (415)
.+..+++.. .+.||+| .|..|+||.+..+. +..+-.+ .|...|++|.|+|+|..||+|+.+|.|.+|-.
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~ 94 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQ 94 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEe
Confidence 456677766 3366666 68899999875432 1111122 78899999999999999999999999999976
Q ss_pred C--------C--------CeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEE
Q 014934 238 S--------R--------CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKW 299 (415)
Q Consensus 238 ~--------~--------~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 299 (415)
. + ......+.+|...|..++|. +.++++|+.|..+++||+..+. ....+..|...|..++|
T Consensus 95 ~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-l~~~~~dh~~yvqgvaw 173 (434)
T KOG1009|consen 95 GDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-LLAILDDHEHYVQGVAW 173 (434)
T ss_pred cCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-eEeeccccccccceeec
Confidence 5 2 23456677899999999998 5799999999999999999987 67888899999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCce------------------------------------------------------
Q 014934 300 SYDNRELASGGNDNRLFVWNQHSTQP------------------------------------------------------ 325 (415)
Q Consensus 300 spdg~~lasg~~dg~I~iwd~~~~~~------------------------------------------------------ 325 (415)
.|-++++++-+.|...+++.+...+.
T Consensus 174 Dpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~ 253 (434)
T KOG1009|consen 174 DPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFK 253 (434)
T ss_pred chhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceee
Confidence 99988888888877666665533211
Q ss_pred ---------------------eEEeccCCCcEEEEEEcCCC-----------------CcEEEEEcCCCCCeEEEEECCC
Q 014934 326 ---------------------VLKYCEHTAAVKAIAWSPHL-----------------HGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 326 ---------------------~~~~~~h~~~V~~l~~sp~~-----------------~~llasggg~~d~~I~iwd~~t 367 (415)
...+.....++.++.|+|-- +.++|.+ ....+.|||.++
T Consensus 254 ~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA---t~~svyvydtq~ 330 (434)
T KOG1009|consen 254 VGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA---TKNSVYVYDTQT 330 (434)
T ss_pred eCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe---ecceEEEecccc
Confidence 11111122233444444310 1123333 356789999998
Q ss_pred CcEEEEee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 368 NTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 368 ~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
-.++..+. |-+.++.++|+.+|..|+. .+.||-..+--++..
T Consensus 331 ~~P~~~v~nihy~~iTDiaws~dg~~l~v--SS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 331 LEPLAVVDNIHYSAITDIAWSDDGSVLLV--SSTDGFCSLVTFEPW 374 (434)
T ss_pred ccceEEEeeeeeeeecceeecCCCcEEEE--eccCCceEEEEEcch
Confidence 88887776 5688999999999999999 567887776665543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=156.75 Aligned_cols=246 Identities=19% Similarity=0.342 Sum_probs=190.9
Q ss_pred CCCCCCCcceeEeecCC-C-cEEEEEcCCeEEEEECCCC--CeEEeEec---C-CCCCeEEEEEcCCCCeEEEEECCCcE
Q 014934 161 APALQDDFYLNLVDWSS-H-NVLAVGLGNCVYLWNACSS--KVTKLCDL---G-IDDSVCSVGWANRNTHLAVGTSHGKV 232 (415)
Q Consensus 161 ~~~l~~~~~i~~l~ws~-~-~~la~~~d~~V~iwd~~~~--~~~~~~~~---~-~~~~V~~v~~sp~g~~la~g~~dg~V 232 (415)
+-.+..+-.|+++.|+| + .+|+++.|+++.+|...+. -......+ + ......+.-|+|+++.+++-+..|..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 33345666899999999 4 6888889999999987654 33333333 2 24568899999999999999999999
Q ss_pred EEEECCCC---eeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC--------------------------
Q 014934 233 QIWDASRC---KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE-------------------------- 281 (415)
Q Consensus 233 ~iwd~~~~---~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-------------------------- 281 (415)
++|-.+.. .....+.||...|.+++|+ +++|++.+.|.+-+++---..+
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 99984332 3444567999999999999 6899999888776554211000
Q ss_pred --------------------------------------------------------------------------------
Q 014934 282 -------------------------------------------------------------------------------- 281 (415)
Q Consensus 282 -------------------------------------------------------------------------------- 281 (415)
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence
Q ss_pred ---------------ccEEEeccccCCeEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCceeEEeccCCCcEEEEEE
Q 014934 282 ---------------DFVSKLSGHKSEVCGLKWSYDNRELASGGNDN-----RLFVWNQHSTQPVLKYCEHTAAVKAIAW 341 (415)
Q Consensus 282 ---------------~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg-----~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 341 (415)
..++++.||..+|.+++.+|+|+++|+++... .|++|+..+...++.+.+|.-.|+.++|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 01122568999999999999999999988654 5999999999888899999999999999
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECCCCcE----EEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTTTNTH----LSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~t~~~----~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+|++++||+.+ .|+++.+|....... ....+ |..-|..+.|+|++.++++ ++.|.+|+||..+..
T Consensus 581 Spdg~~LLsvs---RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaT--aSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 581 SPDGRYLLSVS---RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFAT--ASRDKKVKVWEEPDL 650 (764)
T ss_pred CCCCcEEEEee---cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEE--ecCCceEEEEeccCc
Confidence 99999776665 799999999854321 11122 5556899999999999998 788999999999876
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-15 Score=146.60 Aligned_cols=239 Identities=30% Similarity=0.475 Sum_probs=189.2
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCC-eEEeEecCCCCCeEEEEE-cCCCC-eEEEEEC-CCcEEEEECCC-
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK-VTKLCDLGIDDSVCSVGW-ANRNT-HLAVGTS-HGKVQIWDASR- 239 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~-~~~~~~~~~~~~V~~v~~-sp~g~-~la~g~~-dg~V~iwd~~~- 239 (415)
...+..+.+.+ +..++.+ .++.+.+|+...+. ....+...+...+..+.+ .+++. .++..+. |+.+.+||...
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 144 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP 144 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC
Confidence 34577888887 5555555 58999999998886 444443223246777777 88887 5555444 99999999998
Q ss_pred CeeeEEecCCCccEEEEEeeC--CEEEEEeC-CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCC-EEEEEeCCCcE
Q 014934 240 CKRVRTMEGHRLRVGALAWSS--SLLSSGSR-DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR-ELASGGNDNRL 315 (415)
Q Consensus 240 ~~~~~~l~~h~~~V~~l~~~~--~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~lasg~~dg~I 315 (415)
......+..|...|..++|.+ ..+++++. |+.+++|++.... .+..+.+|...|.+++|+|++. .+++++.|+.|
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 223 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEEecCCCcE
Confidence 788888999999999999984 56788875 9999999999854 5777888999999999999998 55556999999
Q ss_pred EEEECCCCceeE-EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE-EEEe-eCCCCEEEEEECCCCCeE
Q 014934 316 FVWNQHSTQPVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH-LSCM-DTGSQVCNLVWSKNVNEL 392 (415)
Q Consensus 316 ~iwd~~~~~~~~-~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~-~~~~-~~~~~V~~l~~s~~~~~l 392 (415)
.+||...+..+. .+..|...+ ...|+|++. ++++++ .|+.+++|++..... +..+ .+...|.++.|.|++..+
T Consensus 224 ~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 224 RLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS-LLASGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred EEEECCCCcEEeeecCCCCcce-eEeECCCCC-EEEEec--CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 999998887777 688888876 448999984 666665 899999999987664 4444 456889999999998888
Q ss_pred EEEEecCCCcEEEEECCCCc
Q 014934 393 VSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 393 ~s~~g~~dg~I~vw~~~s~~ 412 (415)
++ ++.|+.+.+|+..+..
T Consensus 300 ~~--~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 300 AS--GSSDGTVRLWDLETGK 317 (466)
T ss_pred EE--eeCCCcEEEEEcCCCc
Confidence 88 5566889999887654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-17 Score=145.74 Aligned_cols=191 Identities=17% Similarity=0.234 Sum_probs=150.6
Q ss_pred eEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec
Q 014934 211 VCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS 288 (415)
Q Consensus 211 V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 288 (415)
..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+ ++.|+++|+|..|.+||+..+. +++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence 7899999999999999999999999999999889999999999999999 7899999999999999999998 555554
Q ss_pred cccCCeEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceeEEecc--C----CCcEEEEEEcCCCCcEEEEEcCCCCCeEE
Q 014934 289 GHKSEVCGLKWSYDNRE-LASGGNDNRLFVWNQHSTQPVLKYCE--H----TAAVKAIAWSPHLHGLLASGGGTADRCIR 361 (415)
Q Consensus 289 ~h~~~V~~l~~spdg~~-lasg~~dg~I~iwd~~~~~~~~~~~~--h----~~~V~~l~~sp~~~~llasggg~~d~~I~ 361 (415)
...+|....|+|..+. +++.--+..-.+-++..+ .+++-. . .....+..|.+.|+++++ |+..|.+.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIit---GtsKGkll 178 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIIT---GTSKGKLL 178 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEE---ecCcceEE
Confidence 5689999999994433 333323333444455442 222211 1 111123368888986665 44799999
Q ss_pred EEECCCCcEEEEeeC--CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 362 FWNTTTNTHLSCMDT--GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 362 iwd~~t~~~~~~~~~--~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
++|..+-+++..+.. -..|..+.++..|+.|+. ..+|..|+.|+...
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~lii--NtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLII--NTSDRVIRTYEISD 227 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEE--ecCCceEEEEehhh
Confidence 999999999988763 367999999999999999 78899999999874
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-18 Score=177.41 Aligned_cols=199 Identities=22% Similarity=0.395 Sum_probs=167.5
Q ss_pred ceeEeecCC--CcEEEEEc-CCeEEEEECCCCCeEEeE-ecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCCCeee
Q 014934 169 YLNLVDWSS--HNVLAVGL-GNCVYLWNACSSKVTKLC-DLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~-d~~V~iwd~~~~~~~~~~-~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
.|..++|++ +++||.|. +|.|.|||+..-+.-... .....+.|.+++|+.. ...||+|+.+|.+.|||++..+.+
T Consensus 118 ~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi 197 (1049)
T KOG0307|consen 118 PVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI 197 (1049)
T ss_pred ceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc
Confidence 477899999 67999994 689999999875433222 2234678999999974 468899999999999999998888
Q ss_pred EEecCCCc--cEEEEEeeC---CEEEEEeCCC---cEEEEECCCCCccEEEeccccCCeEEEEEeCCC-CEEEEEeCCCc
Q 014934 244 RTMEGHRL--RVGALAWSS---SLLSSGSRDK---SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN-RELASGGNDNR 314 (415)
Q Consensus 244 ~~l~~h~~--~V~~l~~~~---~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~lasg~~dg~ 314 (415)
..+..|.+ .+..++|++ ..|++++.|. .|.+||+|....+++.+.+|...|.++.|++.+ .+|++++.|++
T Consensus 198 i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ 277 (1049)
T KOG0307|consen 198 IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR 277 (1049)
T ss_pred cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC
Confidence 88876655 478899996 3566665553 599999999888889999999999999999955 88999999999
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc
Q 014934 315 LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (415)
Q Consensus 315 I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~ 369 (415)
|.+|+.++++.+..+......+..+.|+|....++++.+ .||.|.|+.+..+.
T Consensus 278 ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~as--fdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 278 IICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAAS--FDGKISIYSLQGTD 330 (1049)
T ss_pred eeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhhe--eccceeeeeeecCC
Confidence 999999999999999888889999999999998999887 99999999997654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=161.94 Aligned_cols=229 Identities=21% Similarity=0.343 Sum_probs=170.5
Q ss_pred cEEEEE---cCCeEEEEECCCC-CeEE-eE-ecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCC-------eeeE
Q 014934 179 NVLAVG---LGNCVYLWNACSS-KVTK-LC-DLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRC-------KRVR 244 (415)
Q Consensus 179 ~~la~~---~d~~V~iwd~~~~-~~~~-~~-~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~-------~~~~ 244 (415)
..+|+- .+|.|-||++... ++.. .+ .+-....|+.+.|.| |...||+++.||.|+||.+..+ ....
T Consensus 592 ~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~ 671 (1012)
T KOG1445|consen 592 KRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEK 671 (1012)
T ss_pred ceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcce
Confidence 445553 4689999998652 2211 00 112357899999999 7789999999999999998654 3445
Q ss_pred EecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 245 TMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
.+..|...|+.+.|++ +.|++++.|-+|.+||+++.. ....+.+|...|.+++|||||+.+|+.+.||+|+||+.+
T Consensus 672 ~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 672 ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPR 750 (1012)
T ss_pred eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCC
Confidence 6788999999999995 899999999999999999987 467889999999999999999999999999999999988
Q ss_pred CC-ceeEEeccCC-CcEEEEEEcCCCCcEEEEEcC-CCCCeEEEEECCCC--cEEEE--eeCCCCEEEEEECCCCCeEEE
Q 014934 322 ST-QPVLKYCEHT-AAVKAIAWSPHLHGLLASGGG-TADRCIRFWNTTTN--THLSC--MDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 322 ~~-~~~~~~~~h~-~~V~~l~~sp~~~~llasggg-~~d~~I~iwd~~t~--~~~~~--~~~~~~V~~l~~s~~~~~l~s 394 (415)
++ ++++.-.+.. ..-..|.|.-+|+.++++|-. ...+.|.+||..+- ..+.. ++..-++.--.+.+|...|+.
T Consensus 751 s~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfl 830 (1012)
T KOG1445|consen 751 SREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFL 830 (1012)
T ss_pred CCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEE
Confidence 76 3444433221 233467888899977777621 12466889988753 33333 333333444456777777766
Q ss_pred EEecCCCcEEEEECC
Q 014934 395 THGYSQNQIIVWRYP 409 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~ 409 (415)
+ |-.|..|.+|.+-
T Consensus 831 t-GKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 831 T-GKGDRFVNMYEVI 844 (1012)
T ss_pred e-cCCCceEEEEEec
Confidence 5 7778899988863
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-17 Score=157.36 Aligned_cols=238 Identities=19% Similarity=0.313 Sum_probs=166.9
Q ss_pred ceeEeecCCC--cEEEEEcCCeEEEEECCCCCeEEe-EecCCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCCCe---
Q 014934 169 YLNLVDWSSH--NVLAVGLGNCVYLWNACSSKVTKL-CDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCK--- 241 (415)
Q Consensus 169 ~i~~l~ws~~--~~la~~~d~~V~iwd~~~~~~~~~-~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~~~--- 241 (415)
.|--+.|-|+ .+|.++.|.++++||+.++++... ..++|...|.+++|.+.. ..|++|+.||.|.|||+.-..
T Consensus 102 AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 102 AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred eeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence 4666788883 344445788999999999988766 224999999999999955 689999999999999985321
Q ss_pred ------------------------eeEEecCCC----ccEEEEEee-CCEEEEEeC-CCcEEEEECCCCCcc-------E
Q 014934 242 ------------------------RVRTMEGHR----LRVGALAWS-SSLLSSGSR-DKSILQRDIRAQEDF-------V 284 (415)
Q Consensus 242 ------------------------~~~~l~~h~----~~V~~l~~~-~~~l~sgs~-dg~I~iwd~~~~~~~-------~ 284 (415)
.++.-..+. +.|+.+.|- ...|++++. |+.|++||++..... .
T Consensus 182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~ 261 (720)
T KOG0321|consen 182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS 261 (720)
T ss_pred HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence 001111222 235566665 578888877 999999999975421 1
Q ss_pred EEeccc---cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC--ceeEEeccCCCc--EEEEEEcCCCCcEEEEEcCCCC
Q 014934 285 SKLSGH---KSEVCGLKWSYDNRELASGGNDNRLFVWNQHST--QPVLKYCEHTAA--VKAIAWSPHLHGLLASGGGTAD 357 (415)
Q Consensus 285 ~~~~~h---~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~--~~~~~~~~h~~~--V~~l~~sp~~~~llasggg~~d 357 (415)
..+..| ...+.+|.....|.+|.+.+.|+.|+.||+.+- .++..+.++... -..-..+|++. .+++|+ .|
T Consensus 262 ~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~-~l~SgS--sd 338 (720)
T KOG0321|consen 262 DKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC-SLLSGS--SD 338 (720)
T ss_pred cCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc-eEeccC--CC
Confidence 122233 345778888888898888888999999999764 455555554322 12235688887 555554 89
Q ss_pred CeEEEEECCCCcEEEE--eeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 358 RCIRFWNTTTNTHLSC--MDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 358 ~~I~iwd~~t~~~~~~--~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
...++|.+.+.+.--. ..|.-.|+.++|.|....=+++ .++|..++||++..
T Consensus 339 ~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T-cSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 339 EQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT-CSDDFRVKIWRLSN 392 (720)
T ss_pred cceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee-eccCcceEEEeccC
Confidence 9999999987654322 2356679999998865433333 37899999999854
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-16 Score=142.93 Aligned_cols=236 Identities=21% Similarity=0.345 Sum_probs=176.5
Q ss_pred eeEeecCC-C-cEEEEEcCCeEEEEECCCC------------CeEEeEecCCCCCeEEEEEc-------CCCCeEEEEEC
Q 014934 170 LNLVDWSS-H-NVLAVGLGNCVYLWNACSS------------KVTKLCDLGIDDSVCSVGWA-------NRNTHLAVGTS 228 (415)
Q Consensus 170 i~~l~ws~-~-~~la~~~d~~V~iwd~~~~------------~~~~~~~~~~~~~V~~v~~s-------p~g~~la~g~~ 228 (415)
+....|+| + -+|+-..|+.+.+|++-.. +....+.......|...+|- |+..++|+.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 44667999 4 4566667899999987421 01112222345678888885 56789999999
Q ss_pred CCcEEEEECCCCeeeEEecC--CCcc---EEEEEee--CCEEEEEeCCCcEEEEEC-CCCCcc-EEE-----eccccCCe
Q 014934 229 HGKVQIWDASRCKRVRTMEG--HRLR---VGALAWS--SSLLSSGSRDKSILQRDI-RAQEDF-VSK-----LSGHKSEV 294 (415)
Q Consensus 229 dg~V~iwd~~~~~~~~~l~~--h~~~---V~~l~~~--~~~l~sgs~dg~I~iwd~-~~~~~~-~~~-----~~~h~~~V 294 (415)
+.-|++||.-+++....+.+ |... ..+++|+ +..|++| ..+.|+++|+ |.+..+ +.. ..+..+-|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999988777763 4433 4578888 4677665 6778999999 444321 111 22346678
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEEE
Q 014934 295 CGLKWSY-DNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLS 372 (415)
Q Consensus 295 ~~l~~sp-dg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~~ 372 (415)
.+++|+| +.+.+|.|+....+-||.-..+.+++.+-+|.+.|+.+.|+++|+.|+. |. ..|..|..||++.- .++.
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfs-Ga-Rk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFS-GA-RKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecc-cc-cCCCeEEEEeehhccchhh
Confidence 9999999 5558999999999999999999999999999999999999999995555 43 37889999999863 4444
Q ss_pred Eee----CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 373 CMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 373 ~~~----~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
.+. ...+-.-....|+++.|++ |+.||.|++||...
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~Las--G~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILAS--GDTDGSVRVWDLKD 328 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeec--cCCCccEEEEecCC
Confidence 443 1234444677899999999 88999999999987
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-15 Score=144.26 Aligned_cols=240 Identities=29% Similarity=0.474 Sum_probs=187.2
Q ss_pred cceeEeecCC-CcEEEEEc--CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCC-eEEEEECCCcEEEEECCCCeee
Q 014934 168 FYLNLVDWSS-HNVLAVGL--GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~~--d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~-~la~g~~dg~V~iwd~~~~~~~ 243 (415)
..+..++|++ +..++.+. ++.+++|+...+....... +|...|.+++|+|++. .+++++.|+.|++||...+..+
T Consensus 156 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~ 234 (466)
T COG2319 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234 (466)
T ss_pred ccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEE
Confidence 3577899999 55666664 8999999999877777765 6889999999999998 5555589999999999888877
Q ss_pred E-EecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 244 R-TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 244 ~-~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
. .+.+|...+ ...|. +..+++++.|+.+++||++........+.+|...|.++.|+|++..+++++.|+.+.+||.
T Consensus 235 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 235 RSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred eeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEc
Confidence 7 688888774 33565 4688899999999999999776434444678899999999999999999999999999999
Q ss_pred CCCceeEEec--cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEec
Q 014934 321 HSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 321 ~~~~~~~~~~--~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
.+........ .|...+..+.|.+++..++..+. .|+.+.+|++..............+..+.+.+ . ....+.+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~ 389 (466)
T COG2319 314 ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS--DDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-GRVVSSGS 389 (466)
T ss_pred CCCceEEEeeecccCCceEEEEECCCCCEEEEeec--CCCcEEeeecCCCceeEEecCCceEEEEEECC-C-CCEEEEec
Confidence 8887766665 78888999999433233444433 67999999999887444444444488999999 6 55443357
Q ss_pred CCCcEEEEECCCCcc
Q 014934 399 SQNQIIVWRYPTMSK 413 (415)
Q Consensus 399 ~dg~I~vw~~~s~~~ 413 (415)
.++.+.+|+......
T Consensus 390 ~~~~~~~~~~~~~~~ 404 (466)
T COG2319 390 TDGTVRLWDLSTGSL 404 (466)
T ss_pred CCCceEEEecccCee
Confidence 889999999987543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-17 Score=150.03 Aligned_cols=164 Identities=23% Similarity=0.410 Sum_probs=139.8
Q ss_pred EEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCC------ccEEEeccccCCeEEEEEeCC-CCEEEEEeCCC
Q 014934 244 RTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQE------DFVSKLSGHKSEVCGLKWSYD-NRELASGGNDN 313 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~spd-g~~lasg~~dg 313 (415)
-.+.+|.++|..++|+| +.|++||.|.+|.+|++..+. .++..+.+|...|--++|+|. .+.|++++.|+
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34569999999999984 789999999999999986543 457788999999999999994 56789999999
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--CCCCEEEEEECCCCCe
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNE 391 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~ 391 (415)
+|.|||+.+++.+.++. |..-|.++.|+-+|. +|++.. .|+.|||||.++++.+.+-. .+..-..+.|-.+|.
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs-~l~Ttc--kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS-LLCTTC--KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCc-eeeeec--ccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 99999999999999986 999999999999998 666655 89999999999999988763 355667788999998
Q ss_pred EEEEEec---CCCcEEEEECCCCcc
Q 014934 392 LVSTHGY---SQNQIIVWRYPTMSK 413 (415)
Q Consensus 392 l~s~~g~---~dg~I~vw~~~s~~~ 413 (415)
++++ |+ ++.++.+||-..+++
T Consensus 230 i~tT-Gfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 230 IFTT-GFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred eeee-ccccccccceeccCcccccC
Confidence 4443 65 478999999887764
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-16 Score=139.77 Aligned_cols=204 Identities=16% Similarity=0.302 Sum_probs=155.0
Q ss_pred eEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC----CeeeEEecCCCccEEEEEee----CCEEEEEeCCCcEE
Q 014934 202 LCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR----CKRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSIL 273 (415)
Q Consensus 202 ~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~----~~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~ 273 (415)
.+..+|.+-|.++.|.+-|+++|+|+.|++|.|||... ..+-...+.|.+.|..+.|- |+.+++++.|+++.
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 34448889999999999999999999999999999643 35666778999999999997 68999999999999
Q ss_pred EEECCCCC--------ccEEEeccccCCeEEEEEeC--CCCEEEEEeCCCcEEEEECCCC------ceeEEec-------
Q 014934 274 QRDIRAQE--------DFVSKLSGHKSEVCGLKWSY--DNRELASGGNDNRLFVWNQHST------QPVLKYC------- 330 (415)
Q Consensus 274 iwd~~~~~--------~~~~~~~~h~~~V~~l~~sp--dg~~lasg~~dg~I~iwd~~~~------~~~~~~~------- 330 (415)
||.-.... ....++......|..++|.| -|-.||+++.||.|+||+.-.. ...+++.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 99752111 12345566778899999998 5778999999999999997543 2223332
Q ss_pred cCCCcEEEEEEcCCC--CcEEEEEcCCCC-----CeEEEEECCCCc-EEEEe----eCCCCEEEEEECCCC----CeEEE
Q 014934 331 EHTAAVKAIAWSPHL--HGLLASGGGTAD-----RCIRFWNTTTNT-HLSCM----DTGSQVCNLVWSKNV----NELVS 394 (415)
Q Consensus 331 ~h~~~V~~l~~sp~~--~~llasggg~~d-----~~I~iwd~~t~~-~~~~~----~~~~~V~~l~~s~~~----~~l~s 394 (415)
.+.....|+.|+|.. ..+||.|+ .+ +.++||....+. ....+ ++..+|..++|.|+- ..|++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs--~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGS--DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccCcceEEeeccccccCceEEEEc--ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 356678899999753 34778775 22 378888765433 22222 378899999999972 34555
Q ss_pred EEecCCCcEEEEECCC
Q 014934 395 THGYSQNQIIVWRYPT 410 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s 410 (415)
+..|| |+||++..
T Consensus 245 --A~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 245 --ATKDG-VRIFKVKV 257 (361)
T ss_pred --eecCc-EEEEEEee
Confidence 67899 99999874
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=150.14 Aligned_cols=197 Identities=17% Similarity=0.276 Sum_probs=165.5
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECC--CCeeeEEecCCCccEEEEEee--CC-EEEEEeCCCcEEEEECCCCCc
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDAS--RCKRVRTMEGHRLRVGALAWS--SS-LLSSGSRDKSILQRDIRAQED 282 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~--~~~~~~~l~~h~~~V~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~ 282 (415)
.+.|++|.|+|....|++|+.||.++||.+. +...+..+.--..+|.+..|. +. .++++++-..++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 5789999999999999999999999999885 344666666566788888887 45 899999999999999987651
Q ss_pred -cEEEecccc-CCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeE
Q 014934 283 -FVSKLSGHK-SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (415)
Q Consensus 283 -~~~~~~~h~-~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I 360 (415)
.+..+.++. ..+.....+|++++||..|..|.|++....+++.+..+ .-.+.|..++|+.+++.|+++|+ +|.|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~-KieG~v~~~~fsSdsk~l~~~~~---~GeV 368 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF-KIEGVVSDFTFSSDSKELLASGG---TGEV 368 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee-eeccEEeeEEEecCCcEEEEEcC---CceE
Confidence 123334444 35777889999999999999999999999999998888 45788999999999998888885 8999
Q ss_pred EEEECCCCcEEEEeeCCCCE--EEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 361 RFWNTTTNTHLSCMDTGSQV--CNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 361 ~iwd~~t~~~~~~~~~~~~V--~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
.+||++...+++.+...+.| ++++.++++.+|++ |+..|.|-|||..+
T Consensus 369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~--GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLAT--GSDSGIVNIYDGNS 418 (514)
T ss_pred EEEecCCcceEEEEeecCccceeeeeecCCCceEEe--ccCcceEEEeccch
Confidence 99999999999888755555 45777899999999 99999999999765
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.3e-17 Score=145.49 Aligned_cols=215 Identities=22% Similarity=0.390 Sum_probs=164.3
Q ss_pred CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCC---CeEEEEEcCCCCeEEEEECCCcEEEEEC-CCCeeeE---Ee--
Q 014934 178 HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDD---SVCSVGWANRNTHLAVGTSHGKVQIWDA-SRCKRVR---TM-- 246 (415)
Q Consensus 178 ~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~---~V~~v~~sp~g~~la~g~~dg~V~iwd~-~~~~~~~---~l-- 246 (415)
.+++|++ .+.-|++||+-+|+....+.. .|-+ ...+++|+|||.+|++|. ...|+++|+ +.++.-. ++
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhc
Confidence 4566666 578899999999998766643 3433 356899999999998765 568999999 4443221 11
Q ss_pred --cCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEEC
Q 014934 247 --EGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-DNRLFVWNQ 320 (415)
Q Consensus 247 --~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-dg~I~iwd~ 320 (415)
.+..+-+.+++|+| ..+++|+....+-||.-..+. ++..+.+|.+.|+.|+|.++|+.|.+|.. |..|..||+
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-ceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence 13367789999995 689999999988888877766 67888899999999999999999999874 778999999
Q ss_pred CC-CceeEEeccCCC-cEEEEEE--cCCCCcEEEEEcCCCCCeEEEEECCC-CcEEEEee-CCCCEEEEEECCCCCeEEE
Q 014934 321 HS-TQPVLKYCEHTA-AVKAIAW--SPHLHGLLASGGGTADRCIRFWNTTT-NTHLSCMD-TGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 321 ~~-~~~~~~~~~h~~-~V~~l~~--sp~~~~llasggg~~d~~I~iwd~~t-~~~~~~~~-~~~~V~~l~~s~~~~~l~s 394 (415)
+. ..++..+..|.. .-..|.| .|.++ +|++|+ .||.|++||+.+ |..+..+. +...|..++++|--..+++
T Consensus 281 R~~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~--tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilat 357 (406)
T KOG2919|consen 281 RYSRDPVYALERHVGDTNQRILFDLDPKGE-ILASGD--TDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILAT 357 (406)
T ss_pred hhccchhhhhhhhccCccceEEEecCCCCc-eeeccC--CCccEEEEecCCCCCcccccccccccccceecCcccceeee
Confidence 86 467777777765 3334444 57776 888887 899999999998 66444443 5667889999999777777
Q ss_pred EEe
Q 014934 395 THG 397 (415)
Q Consensus 395 ~~g 397 (415)
++|
T Consensus 358 ssG 360 (406)
T KOG2919|consen 358 SSG 360 (406)
T ss_pred ccC
Confidence 543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=153.48 Aligned_cols=229 Identities=19% Similarity=0.315 Sum_probs=168.1
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCC--eEEEEECCC--------------
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT--HLAVGTSHG-------------- 230 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~--~la~g~~dg-------------- 230 (415)
.+.+|...+ +.+||.|+ ||+|+||.+.+|.+++.+.++ +.|.||+|+|.+. .||++....
T Consensus 402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d--~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~ 479 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD--SEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEV 479 (733)
T ss_pred eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec--ceeEEEEecCCCCceeEEEEecCceEEeCccccchhhh
Confidence 478888888 88999985 689999999999998888653 6889999988664 444433222
Q ss_pred ------------------cEEEEECC--------------CCeeeEEe--------------------------------
Q 014934 231 ------------------KVQIWDAS--------------RCKRVRTM-------------------------------- 246 (415)
Q Consensus 231 ------------------~V~iwd~~--------------~~~~~~~l-------------------------------- 246 (415)
.|..|.-. ..+.+..+
T Consensus 480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ 559 (733)
T KOG0650|consen 480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ 559 (733)
T ss_pred cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc
Confidence 12233211 00111111
Q ss_pred ---cCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 247 ---EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 247 ---~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
....+.|.++.|+| .+|++++. ..|++||+.... .+..+......|.+++.+|.|..|+.|+.|+.++.||+.
T Consensus 560 ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqe-lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 560 SPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQE-LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred CchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHH-HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcc
Confidence 11235677888885 46666654 569999998755 566666677789999999999999999999999999987
Q ss_pred C-CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC------CCc---EEEEee-C----CCCEEEEEEC
Q 014934 322 S-TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT------TNT---HLSCMD-T----GSQVCNLVWS 386 (415)
Q Consensus 322 ~-~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~------t~~---~~~~~~-~----~~~V~~l~~s 386 (415)
- .++.+++..|..+|++++|++.-. |+++|+ .|+++.|+.-. ... ++..+. | .-.|..+.|+
T Consensus 638 lsskPyk~lr~H~~avr~Va~H~ryP-Lfas~s--dDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH 714 (733)
T KOG0650|consen 638 LSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGS--DDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH 714 (733)
T ss_pred cCcchhHHhhhhhhhhhhhhhccccc-eeeeec--CCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc
Confidence 4 478888889999999999999866 999987 88999988532 122 222332 2 2347888999
Q ss_pred CCCCeEEEEEecCCCcEEEE
Q 014934 387 KNVNELVSTHGYSQNQIIVW 406 (415)
Q Consensus 387 ~~~~~l~s~~g~~dg~I~vw 406 (415)
|...+|++ .+.||.|++|
T Consensus 715 P~qpWLfs--AGAd~tirlf 732 (733)
T KOG0650|consen 715 PRQPWLFS--AGADGTIRLF 732 (733)
T ss_pred CCCceEEe--cCCCceEEee
Confidence 99999999 5579999998
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-16 Score=134.74 Aligned_cols=195 Identities=17% Similarity=0.274 Sum_probs=151.7
Q ss_pred CeEEEEEcCCCCeEEEEECCCcEEEEECCC---------C-eeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCC
Q 014934 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASR---------C-KRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRA 279 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~~dg~V~iwd~~~---------~-~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~ 279 (415)
.|.+-+|+|.+++|++|..+|.|.+..+.. + ..+....+|.++|..++|...+|++|+. |.|+-|..+.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E 90 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNE 90 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehh
Confidence 466678999999999999999999998853 2 2445567999999999999988988875 9999998775
Q ss_pred CCccEE-------Eeccc-----cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCc
Q 014934 280 QEDFVS-------KLSGH-----KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHG 347 (415)
Q Consensus 280 ~~~~~~-------~~~~h-----~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 347 (415)
..+... ...-| --+|+++...|..+-++.++.|+.++-||+++|+...++++|+..|.+++--....
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~- 169 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG- 169 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc-
Confidence 432110 01111 23689999999888888888999999999999999999999999999998844433
Q ss_pred EEEEEcCCCCCeEEEEECCCCcEEEEeeC-----------CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 348 LLASGGGTADRCIRFWNTTTNTHLSCMDT-----------GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 348 llasggg~~d~~I~iwd~~t~~~~~~~~~-----------~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
-+.+|+ +||++|+||++++++++.++. +..|- +..-+..+|++ |. ...+.+|.+++++.
T Consensus 170 qilsG~--EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig--ala~~edWlvC--Gg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 170 QILSGA--EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG--ALAVNEDWLVC--GG-GPKLSLWHLRSSES 239 (325)
T ss_pred ceeecC--CCccEEEEeccccceeEEeccccChhhcCcccCceeE--EEeccCceEEe--cC-CCceeEEeccCCCc
Confidence 445555 999999999999999988852 12233 34456678888 43 35899999998864
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.9e-17 Score=154.08 Aligned_cols=202 Identities=20% Similarity=0.333 Sum_probs=165.8
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC--------CeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEE
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR--------CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQR 275 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~--------~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iw 275 (415)
.|.+.|+.+.|.+....|++|+.||.+.+|+++. .+++.++.+|.++|.|++.. ++.+++|+.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 5778999999999999999999999999999932 35778899999999999997 6899999999999999
Q ss_pred ECCCC---------CccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce---------------------
Q 014934 276 DIRAQ---------EDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP--------------------- 325 (415)
Q Consensus 276 d~~~~---------~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~--------------------- 325 (415)
++... ......+.||...|+.+++|+....|++++.||++++|+.....+
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~ 451 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR 451 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch
Confidence 66521 123456789999999999999999999999999999999754332
Q ss_pred -----------------------eEEecc-------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 326 -----------------------VLKYCE-------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 326 -----------------------~~~~~~-------h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
+..+.. -...+..+.++|.+. +..++. .|+.|+++|..+++.+....
T Consensus 452 ~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~h--ed~~Ir~~dn~~~~~l~s~~ 528 (577)
T KOG0642|consen 452 PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAH--EDRSIRFFDNKTGKILHSMV 528 (577)
T ss_pred hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecc--cCCceecccccccccchhee
Confidence 000000 012456778888886 666665 89999999999999887664
Q ss_pred -CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 376 -TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 376 -~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+...++++++.|+|-+|++ |..|+.+.+|+.....
T Consensus 529 a~~~svtslai~~ng~~l~s--~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 529 AHKDSVTSLAIDPNGPYLMS--GSHDGSVRLWKLDVKT 564 (577)
T ss_pred eccceecceeecCCCceEEe--ecCCceeehhhccchh
Confidence 7788999999999999999 8899999999986543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=148.67 Aligned_cols=233 Identities=16% Similarity=0.282 Sum_probs=179.0
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC-------
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC------- 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~------- 240 (415)
+|+-++|-| +.-|..+.++.+++||...|.....+. +|.+.|.||+|+.||+++|+|+.|..|.+|..+-.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH 92 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH 92 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence 688899999 777888889999999999999988887 99999999999999999999999999999985421
Q ss_pred -eeeEEec-----------------------------CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc-EEEe
Q 014934 241 -KRVRTME-----------------------------GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF-VSKL 287 (415)
Q Consensus 241 -~~~~~l~-----------------------------~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~-~~~~ 287 (415)
..+..+. ....+|.+.+|. |.+|+.|-.||+|.+.+-...++. +...
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rp 172 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERP 172 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCC
Confidence 1111111 123467777887 678999999999999865443321 2222
Q ss_pred ccccCCeEEEEEeCCC-----CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEE
Q 014934 288 SGHKSEVCGLKWSYDN-----RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (415)
Q Consensus 288 ~~h~~~V~~l~~spdg-----~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~i 362 (415)
.+...+|.+++|+|.. ..+++.....++..|.+. |+.+-+-..-.-...|+.+.++|.++|+-| .|+.+++
T Consensus 173 gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG---sdk~L~~ 248 (1081)
T KOG1538|consen 173 GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG---SDKQLSL 248 (1081)
T ss_pred CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc---CCCceEE
Confidence 3567899999999853 467888888888887764 444433233344567899999999777744 6999999
Q ss_pred EECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 363 WNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 363 wd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
|- +.|-.+.++. ..+.|+.++..|+++.++. |..||+|..|++-
T Consensus 249 fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~--GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 249 FT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVV--GCQDGTIACYNLI 293 (1081)
T ss_pred Ee-ecCeEEeeccccceeEEEEEEccCCceEEE--EEccCeeehhhhH
Confidence 85 5677777765 5678999999999999999 8899999998864
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.4e-16 Score=154.33 Aligned_cols=219 Identities=20% Similarity=0.318 Sum_probs=165.9
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCCee--eEEe----cCCCccEEEEEee
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKR--VRTM----EGHRLRVGALAWS 259 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~~~--~~~l----~~h~~~V~~l~~~ 259 (415)
+.+++|++......... +.....|+|++|+| +..+||.|+.+|.|.+||+..+.. ...+ ..|..+|..+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEE-EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 36999999887322222 24578999999999 567899999999999999987654 2222 3589999999997
Q ss_pred ----CCEEEEEeCCCcEEEEECCCCCccEEEe----c-------cccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCC
Q 014934 260 ----SSLLSSGSRDKSILQRDIRAQEDFVSKL----S-------GHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 260 ----~~~l~sgs~dg~I~iwd~~~~~~~~~~~----~-------~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~ 323 (415)
+.-|++++.||.|..|+++.-..+.... . .-...+++++|.+ +...|++|+.+|.|+.=+-...
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 3569999999999999987644221111 0 1123578899987 6678999999999887443322
Q ss_pred --------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC-CCcEEEEee-CCCCEEEEEECCCCCeEE
Q 014934 324 --------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT-TNTHLSCMD-TGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 324 --------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~-t~~~~~~~~-~~~~V~~l~~s~~~~~l~ 393 (415)
+.+..+..|.+.|.++.++|.+..++.++| |-+++||... ...++..++ ....|++++|||....++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeec---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 223456678999999999999998888886 9999999987 555665555 445699999999987776
Q ss_pred EEEecCCCcEEEEECCC
Q 014934 394 STHGYSQNQIIVWRYPT 410 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s 410 (415)
++ +..||.|.+||+..
T Consensus 458 ~~-~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 458 AT-VDGDGNLDIWDLLQ 473 (555)
T ss_pred EE-EcCCCceehhhhhc
Confidence 65 67899999999853
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=155.50 Aligned_cols=200 Identities=22% Similarity=0.391 Sum_probs=159.8
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCC-----cEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECC
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHG-----KVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIR 278 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg-----~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~ 278 (415)
+|.-.|++++.+|+|+++|+++... .|+||+..+...+..+.+|+-.|+.|+|+ +.+|++.++|+++.+|...
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~ 602 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ 602 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeee
Confidence 7889999999999999999997753 59999999999999999999999999999 5899999999999999885
Q ss_pred CCCcc---EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC--ceeEE--eccCCCcEEEEEEcCCCC----c
Q 014934 279 AQEDF---VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST--QPVLK--YCEHTAAVKAIAWSPHLH----G 347 (415)
Q Consensus 279 ~~~~~---~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~--~~~~~--~~~h~~~V~~l~~sp~~~----~ 347 (415)
..... ....+.|..-|.+..|+|++.+|||++.|.+|+||..... +.+.. ...+..+|++++|.|-.. .
T Consensus 603 ~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~ 682 (764)
T KOG1063|consen 603 EDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGD 682 (764)
T ss_pred cccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccc
Confidence 54322 2236789999999999999999999999999999998876 44433 235788999999988543 3
Q ss_pred EEEEEcCCCCCeEEEEECCCCcE-------E------EEeeCCCCEEEEEECCC--------CC--eEEEEEecCCCcEE
Q 014934 348 LLASGGGTADRCIRFWNTTTNTH-------L------SCMDTGSQVCNLVWSKN--------VN--ELVSTHGYSQNQII 404 (415)
Q Consensus 348 llasggg~~d~~I~iwd~~t~~~-------~------~~~~~~~~V~~l~~s~~--------~~--~l~s~~g~~dg~I~ 404 (415)
+++.|- +.|.|.+|....-.. . ..+.+.+.|..+.|.|. .. .|++ |++|..++
T Consensus 683 ~vavGl--e~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~--~g~D~~vr 758 (764)
T KOG1063|consen 683 VVAVGL--EKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAV--GGDDESVR 758 (764)
T ss_pred eEEEEe--cccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEee--ecccceeE
Confidence 667665 899999999651111 0 11123466899999975 23 3455 78999999
Q ss_pred EEECC
Q 014934 405 VWRYP 409 (415)
Q Consensus 405 vw~~~ 409 (415)
++++.
T Consensus 759 i~nv~ 763 (764)
T KOG1063|consen 759 IFNVD 763 (764)
T ss_pred Eeecc
Confidence 99874
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=137.13 Aligned_cols=247 Identities=17% Similarity=0.239 Sum_probs=184.1
Q ss_pred CCCCceeccCCCCCCCcceeEeecCCCcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC
Q 014934 152 PRSPYKILDAPALQDDFYLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG 230 (415)
Q Consensus 152 ~~~p~~~ld~~~l~~~~~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg 230 (415)
|-.|+-+|. | +.-.++++.|-.+..|..| ..|.|++|++.+......+...+...|+.+...|+ ..|.+-+.|+
T Consensus 3 pPdP~fvLR-p---~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 3 PPDPFFVLR-P---HSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCeeEec-c---ccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCc
Confidence 345666665 2 2335778888874445555 57999999999998877777666788999998887 4567778899
Q ss_pred cEEEEECCCCeeeEE---------------------------ec--------------------------CCCccEEEEE
Q 014934 231 KVQIWDASRCKRVRT---------------------------ME--------------------------GHRLRVGALA 257 (415)
Q Consensus 231 ~V~iwd~~~~~~~~~---------------------------l~--------------------------~h~~~V~~l~ 257 (415)
.+.+|++.-+..+.. +. +..+.+.|..
T Consensus 78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 999998754211100 00 1123455555
Q ss_pred ee---C--CEEEEEeCCCcEEEEECCCCCc---------cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 258 WS---S--SLLSSGSRDKSILQRDIRAQED---------FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 258 ~~---~--~~l~sgs~dg~I~iwd~~~~~~---------~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
|. + -+|++|-.+|.+.+||+..+.. .......|.++|.++.+.+.-..=++|+.+..+.+|++...
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 53 1 2678889999999999988632 23344579999999999876666678888889999998643
Q ss_pred --ce--eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEec
Q 014934 324 --QP--VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 324 --~~--~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
.. -..+.-..-.|..+..-||++ ++|++| .|+.||+|+.++..++..+. |...|.+++|+|+...+++ ++
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAG--WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAa--as 312 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAG--WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAA--AS 312 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCc-EEeecc--cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhh--cc
Confidence 21 112223445688999999987 999998 99999999999999998886 7788999999999988888 78
Q ss_pred CCCcEEEEEC
Q 014934 399 SQNQIIVWRY 408 (415)
Q Consensus 399 ~dg~I~vw~~ 408 (415)
.|++|.+|++
T Consensus 313 kD~rISLWkL 322 (323)
T KOG0322|consen 313 KDARISLWKL 322 (323)
T ss_pred CCceEEeeec
Confidence 9999999986
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-14 Score=139.94 Aligned_cols=235 Identities=11% Similarity=0.066 Sum_probs=160.1
Q ss_pred eeEeecCC-CcEEEEE--cCCeEEEEECC-CCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC-CCcEEEEECCCCe---
Q 014934 170 LNLVDWSS-HNVLAVG--LGNCVYLWNAC-SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRCK--- 241 (415)
Q Consensus 170 i~~l~ws~-~~~la~~--~d~~V~iwd~~-~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~-dg~V~iwd~~~~~--- 241 (415)
...+.++| ++.|+++ .++.|.+|++. ++++...-.....+....++|+|+|++|++++. ++.|.+|++.+..
T Consensus 37 ~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~ 116 (330)
T PRK11028 37 VQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV 116 (330)
T ss_pred CccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC
Confidence 34567888 6666665 35789999986 344433332233456789999999998888764 8899999996432
Q ss_pred -eeEEecCCCccEEEEEee--CCEE-EEEeCCCcEEEEECCCCCccE------EEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 242 -RVRTMEGHRLRVGALAWS--SSLL-SSGSRDKSILQRDIRAQEDFV------SKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 242 -~~~~l~~h~~~V~~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~------~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
.+..+. +.....+++++ ++++ ++...++.|.+||+....... .... .......+.|+|+|++|+++..
T Consensus 117 ~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 117 APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEec
Confidence 233333 22345667777 3566 455567999999998643211 0111 2344678999999999988776
Q ss_pred -CCcEEEEECCC--C--ceeEEeccC------CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc----EEEEeeC
Q 014934 312 -DNRLFVWNQHS--T--QPVLKYCEH------TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT----HLSCMDT 376 (415)
Q Consensus 312 -dg~I~iwd~~~--~--~~~~~~~~h------~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~----~~~~~~~ 376 (415)
++.|.+||+.. + +.+..+..+ ......+.++|++++++++.. .++.|.+|++.... .+..+..
T Consensus 195 ~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~--~~~~I~v~~i~~~~~~~~~~~~~~~ 272 (330)
T PRK11028 195 LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR--TASLISVFSVSEDGSVLSFEGHQPT 272 (330)
T ss_pred CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC--CCCeEEEEEEeCCCCeEEEeEEEec
Confidence 89999999973 2 223333221 122346899999998887754 58899999985432 3444445
Q ss_pred CCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 377 ~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+.....+.|+|+|++|+++. ..++.|.+|++.
T Consensus 273 ~~~p~~~~~~~dg~~l~va~-~~~~~v~v~~~~ 304 (330)
T PRK11028 273 ETQPRGFNIDHSGKYLIAAG-QKSHHISVYEID 304 (330)
T ss_pred cccCCceEECCCCCEEEEEE-ccCCcEEEEEEc
Confidence 55667899999999999863 458899999875
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-15 Score=147.94 Aligned_cols=198 Identities=18% Similarity=0.300 Sum_probs=158.4
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC----CEEEEEeCCCcEEEEECCCC-
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQ- 280 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~- 280 (415)
+|++.|.+|...|.|.+||+|+.||+|+||.+.++.+++++. ..+.|.||+|++ .+|+++-.. .+.+.+..-+
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~ 475 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGD 475 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEeCccccc
Confidence 899999999999999999999999999999999999999987 456899999994 244444333 2444332111
Q ss_pred -----------------------------------CccEEEeccccCCeEEEEEeCCCCEEEEEeCC---CcEEEEECCC
Q 014934 281 -----------------------------------EDFVSKLSGHKSEVCGLKWSYDNRELASGGND---NRLFVWNQHS 322 (415)
Q Consensus 281 -----------------------------------~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d---g~I~iwd~~~ 322 (415)
+.-+.....|...|..+.|+..|.|||+..-+ ..|.|+++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 11123344678899999999999999996654 4699999987
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCC-CEEEEEECCCCCeEEEEEecCCC
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS-QVCNLVWSKNVNELVSTHGYSQN 401 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~-~V~~l~~s~~~~~l~s~~g~~dg 401 (415)
.+...-|....+.|.++.|+|...+++++. ...|+|||+..+..+..+.++. .|..++.+|.|..|+. |+.|+
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~--gs~d~ 629 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL--GSYDK 629 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEe----ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE--ecCCC
Confidence 766666666778899999999999888765 6899999999988877776654 5888999999999999 88999
Q ss_pred cEEEEECCCC
Q 014934 402 QIIVWRYPTM 411 (415)
Q Consensus 402 ~I~vw~~~s~ 411 (415)
.++.+|+.-.
T Consensus 630 k~~WfDldls 639 (733)
T KOG0650|consen 630 KMCWFDLDLS 639 (733)
T ss_pred eeEEEEcccC
Confidence 9999998644
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-17 Score=162.59 Aligned_cols=235 Identities=18% Similarity=0.285 Sum_probs=185.8
Q ss_pred eeEeecCC-CcEEEEEcC-CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 170 LNLVDWSS-HNVLAVGLG-NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d-~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
|.|+.+.. +..|..|+| ..|+||..+++.+...+. +|.+.|+.++.+.+..++|+++.|..|++|-+.++..+..+.
T Consensus 193 Vyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr 271 (1113)
T KOG0644|consen 193 VYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR 271 (1113)
T ss_pred eeeeeeccccceEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh
Confidence 67888887 777777765 679999999999888887 999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEeeCCEEEEEeCCCcEEEEECCC-CCccE------------EEe----------------ccccCCeEEEE
Q 014934 248 GHRLRVGALAWSSSLLSSGSRDKSILQRDIRA-QEDFV------------SKL----------------SGHKSEVCGLK 298 (415)
Q Consensus 248 ~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~-~~~~~------------~~~----------------~~h~~~V~~l~ 298 (415)
+|.+.|++++|+|.. +.+.||++++||.+- ....+ ..+ .....++-.++
T Consensus 272 ghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~ 349 (1113)
T KOG0644|consen 272 GHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA 349 (1113)
T ss_pred ccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh
Confidence 999999999999855 788999999999881 11000 000 00011222333
Q ss_pred EeCCCCEEEE-----------EeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 299 WSYDNRELAS-----------GGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 299 ~spdg~~las-----------g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t 367 (415)
|...+-.+++ +-.+-.+++|++.++..++.+.+|...+..+.++|.+..+..++| .||.+.|||+-.
T Consensus 350 ~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag--~dgst~iwdi~e 427 (1113)
T KOG0644|consen 350 WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG--YDGSTIIWDIWE 427 (1113)
T ss_pred hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhcc--CCCceEeeeccc
Confidence 4333333333 334556889999999999999999999999999999998888887 999999999999
Q ss_pred CcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 368 NTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 368 ~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
|.+++... .+..+....||++|..++. ...-|+++|...-..
T Consensus 428 g~pik~y~~gh~kl~d~kFSqdgts~~l--sd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 428 GIPIKHYFIGHGKLVDGKFSQDGTSIAL--SDDHGQLYILGTGQS 470 (1113)
T ss_pred CCcceeeecccceeeccccCCCCceEec--CCCCCceEEeccCCC
Confidence 98877665 4567888899999999888 556788888876443
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9e-15 Score=127.40 Aligned_cols=224 Identities=16% Similarity=0.220 Sum_probs=163.0
Q ss_pred EeecCC-CcEEEEE-cCCeEEEEECCC---------CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC
Q 014934 172 LVDWSS-HNVLAVG-LGNCVYLWNACS---------SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 172 ~l~ws~-~~~la~~-~d~~V~iwd~~~---------~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~ 240 (415)
.-+|+| .++|++| .+|.|.+..+.+ ++...+..-.|.++|..++|. ..+|++|+ ||.|+-|.-...
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~ 91 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEE 91 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhh
Confidence 346888 7778777 579999998753 222222323789999999998 45666655 599999976432
Q ss_pred ee------eEEe--cCC-----CccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCE
Q 014934 241 KR------VRTM--EGH-----RLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305 (415)
Q Consensus 241 ~~------~~~l--~~h-----~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 305 (415)
.. +-.+ ..| -..|++|...| +-++.++.|+.++.||++++. ....+.+|...|.++.--.....
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeecccCcc
Confidence 11 1001 112 23577777763 556666699999999999997 78899999999999998556668
Q ss_pred EEEEeCCCcEEEEECCCCceeEEecc---------CC-CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 306 LASGGNDNRLFVWNQHSTQPVLKYCE---------HT-AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 306 lasg~~dg~I~iwd~~~~~~~~~~~~---------h~-~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
+++|++||+++|||.++++.+..++. |. ..|-+++-+.+ -+++|+ ...+.+|+++..++...+.
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg---Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG---GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC---CCceeEEeccCCCceEEEe
Confidence 89999999999999999998887753 22 23566666644 566665 5789999999999999998
Q ss_pred CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 376 TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 376 ~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
....|..+.|..+- +++ ++..+.+.-|.+.
T Consensus 245 ipa~v~~v~F~~d~--vl~--~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 245 IPARVHLVDFVDDC--VLI--GGEGNHVQSYTLN 274 (325)
T ss_pred cccceeEeeeecce--EEE--eccccceeeeeec
Confidence 88889888886543 444 4455677777654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-16 Score=148.91 Aligned_cols=203 Identities=20% Similarity=0.337 Sum_probs=159.5
Q ss_pred cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEe
Q 014934 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAW 258 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~ 258 (415)
.++.++.||.+.|.+ ..+++.+... .|.+.+.|-.|+|||.-|++++.||.|++|.- +|....++-....+|.|++|
T Consensus 77 ~~~i~s~DGkf~il~-k~~rVE~sv~-AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN-KSARVERSIS-AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred eEEEEcCCceEEEec-ccchhhhhhh-hhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEE
Confidence 356666899999987 4566666665 78999999999999999999999999999984 45444455556778999999
Q ss_pred eC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCc
Q 014934 259 SS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAA 335 (415)
Q Consensus 259 ~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~ 335 (415)
.| +.+++.+ +.+.|=-+.... .+..+++|.+-|.++.|++..+++++||.|-+.+|||. -|..++.-..|..+
T Consensus 154 ~p~S~~vl~c~g--~h~~IKpL~~n~-k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 154 APNSNSIVFCQG--GHISIKPLAANS-KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYA 229 (737)
T ss_pred CCCCCceEEecC--CeEEEeeccccc-ceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccc
Confidence 84 4555543 556666666555 46678899999999999999999999999999999997 46677777789999
Q ss_pred EEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEE
Q 014934 336 VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (415)
Q Consensus 336 V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~v 405 (415)
|++++|.|+ .+++.++ -.++|+=.. .-+.|.+++||+||..++. |...|.+.+
T Consensus 230 ITSva~npd--~~~~v~S---~nt~R~~~p----------~~GSifnlsWS~DGTQ~a~--gt~~G~v~~ 282 (737)
T KOG1524|consen 230 ITSVAFNPE--KDYLLWS---YNTARFSSP----------RVGSIFNLSWSADGTQATC--GTSTGQLIV 282 (737)
T ss_pred eeeeeeccc--cceeeee---eeeeeecCC----------CccceEEEEEcCCCceeec--cccCceEEE
Confidence 999999999 3666664 456662222 2357889999999999988 666776654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-16 Score=148.94 Aligned_cols=204 Identities=19% Similarity=0.323 Sum_probs=160.3
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe-cCCCccEEEEEee----CCEEEEEeCCCcEEEEECCC-
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM-EGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRA- 279 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l-~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~- 279 (415)
+|.+.|.|++|+.+|.+|++|+.|-.+.|||.-..+.+..+ .+|.+.|.++.|- ..++++|..|..|+++|+..
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 89999999999999999999999999999999888877766 5899999999997 46899999999999999985
Q ss_pred --------CCccEEEeccccCCeEEEEEeCCC-CEEEEEeCCCcEEEEECCCCce----------eEEeccCCCcEEEEE
Q 014934 280 --------QEDFVSKLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQP----------VLKYCEHTAAVKAIA 340 (415)
Q Consensus 280 --------~~~~~~~~~~h~~~V~~l~~spdg-~~lasg~~dg~I~iwd~~~~~~----------~~~~~~h~~~V~~l~ 340 (415)
.......+..|...|..|+-.|++ ..|.+++.||+|+-+|++.... +..+...--..+++.
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lt 207 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLT 207 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeee
Confidence 223445567888899999999988 7899999999999999986421 111112223468899
Q ss_pred EcCCCCcEEEEEcCCCCCeEEEEECCC--------Cc----------EEEEee--C-----C------CCEEEEEECCCC
Q 014934 341 WSPHLHGLLASGGGTADRCIRFWNTTT--------NT----------HLSCMD--T-----G------SQVCNLVWSKNV 389 (415)
Q Consensus 341 ~sp~~~~llasggg~~d~~I~iwd~~t--------~~----------~~~~~~--~-----~------~~V~~l~~s~~~ 389 (415)
.+|...++|+.|+ .|-..++||.+. +. +++.+. + + .-++-+.|+|+|
T Consensus 208 isp~rp~~laVGg--sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNG 285 (758)
T KOG1310|consen 208 ISPSRPYYLAVGG--SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNG 285 (758)
T ss_pred ecCCCCceEEecC--CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCC
Confidence 9999999999997 899999999431 11 122221 0 0 114568999999
Q ss_pred CeEEEEEecCCCcEEEEECCCCcc
Q 014934 390 NELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 390 ~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.+|++.- ....|+++++...+.
T Consensus 286 tElLvs~--~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 286 TELLVSW--GGEHVYLFDVNEDKS 307 (758)
T ss_pred cEEEEee--CCeEEEEEeecCCCC
Confidence 9999854 445899999876653
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.1e-15 Score=134.23 Aligned_cols=222 Identities=22% Similarity=0.334 Sum_probs=152.9
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCC----
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASR---- 239 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~---- 239 (415)
+..+..++|++ -..+|++ .|..|++|+..+... ..++......|+|++|-|. ++.|++|+..| |.||....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p-t~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-TKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC-ceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34577899999 3444444 789999999877433 3333344678999999995 46889988876 88998642
Q ss_pred CeeeE----------EecCCCccEEEEEee--CCEEEEEe-CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEE
Q 014934 240 CKRVR----------TMEGHRLRVGALAWS--SSLLSSGS-RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306 (415)
Q Consensus 240 ~~~~~----------~l~~h~~~V~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 306 (415)
++.++ ...+| ..|++|.|+ +..+++++ .|..|.|||+.++...... ....+.+.-+.|||||.+|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCCEE
Confidence 12111 22345 689999998 46777776 4678999999988742222 2334678899999999999
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC----Cc--------EE---
Q 014934 307 ASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT----NT--------HL--- 371 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t----~~--------~~--- 371 (415)
..+.-|+..++|......-......-.+.|...+|+|.|+.||.+.+| .-++|.+.- +. .+
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg----sp~lysl~f~~~~~~~~~~~~~k~~lli 329 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG----SPRLYSLTFDGEDSVFLRPQSIKRVLLI 329 (445)
T ss_pred EEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC----CceEEEEeecCCCccccCcccceeeeee
Confidence 999999999999654332222222344589999999999999888762 233333321 10 00
Q ss_pred EEe-----e-----CCCCEEEEEECCCCCeEEEEE
Q 014934 372 SCM-----D-----TGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 372 ~~~-----~-----~~~~V~~l~~s~~~~~l~s~~ 396 (415)
..+ . ..+.+.+++|.|.|.+|++..
T Consensus 330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred ccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 011 1 246678999999999999954
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=147.10 Aligned_cols=205 Identities=17% Similarity=0.219 Sum_probs=161.0
Q ss_pred CcceeEeecCC--CcEEEEEcCCeEEEEECCC------CCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC
Q 014934 167 DFYLNLVDWSS--HNVLAVGLGNCVYLWNACS------SKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA 237 (415)
Q Consensus 167 ~~~i~~l~ws~--~~~la~~~d~~V~iwd~~~------~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~ 237 (415)
.-++..+.+++ ..++.+..++.+.+|+++. ..+..++.+ +|.++|.|++..+++.++.+|+.||+|+.|++
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence 34677888888 4455555789999999932 234445554 89999999999999999999999999999965
Q ss_pred CC------C----eeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccE---------------------
Q 014934 238 SR------C----KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFV--------------------- 284 (415)
Q Consensus 238 ~~------~----~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~--------------------- 284 (415)
.. . .....+.||...|+.++++ ...|++++.||+++.|+......+.
T Consensus 374 p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a 453 (577)
T KOG0642|consen 374 PPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPA 453 (577)
T ss_pred CCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhH
Confidence 31 1 2345677999999999998 5789999999999999875433100
Q ss_pred ----------------------EEec--c-----ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCc
Q 014934 285 ----------------------SKLS--G-----HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAA 335 (415)
Q Consensus 285 ----------------------~~~~--~-----h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~ 335 (415)
..+. + -...+.-+.++|.+.+.+++..|+.|+++|..++++++....|...
T Consensus 454 ~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~s 533 (577)
T KOG0642|consen 454 HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDS 533 (577)
T ss_pred hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccce
Confidence 0000 0 0123566788899999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 336 VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 336 V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
|+++++.|+|. .|++++ .|+.+++|.+....++...
T Consensus 534 vtslai~~ng~-~l~s~s--~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 534 VTSLAIDPNGP-YLMSGS--HDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred ecceeecCCCc-eEEeec--CCceeehhhccchheeecc
Confidence 99999999998 555655 8999999999877666544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.7e-14 Score=126.86 Aligned_cols=231 Identities=18% Similarity=0.247 Sum_probs=170.1
Q ss_pred EeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEE-EECC------CcEEEEECCCCeee
Q 014934 172 LVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV-GTSH------GKVQIWDASRCKRV 243 (415)
Q Consensus 172 ~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~-g~~d------g~V~iwd~~~~~~~ 243 (415)
.++|+. ...++++.+...+||+.+--+.....+. +.+.+.-+..--..++||. |+.+ ..|.|||=...+++
T Consensus 10 svs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~-~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i 88 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQF-IDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCI 88 (346)
T ss_pred EEEEccCCceEEEEecCceEEEecCchhhhhhhcc-ccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEE
Confidence 388888 7789999999999999865222111111 1112222222223444443 4333 46999997777888
Q ss_pred EEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecc--ccCCeEEEEEeCCCCEEEE-EeCCCcEEEEEC
Q 014934 244 RTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSG--HKSEVCGLKWSYDNRELAS-GGNDNRLFVWNQ 320 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~las-g~~dg~I~iwd~ 320 (415)
.++. ...+|.++.+.++.|++.- .+.|++|.....-+.++.+.. ....+|+++-+.+..+||. |-.-|.|.|-|+
T Consensus 89 ~el~-f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 89 IELS-FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred EEEE-eccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence 8877 6788999999988888774 567999999855445555442 2345777776666667776 556799999999
Q ss_pred CCCce--eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCe-EEEEECCCCcEEEEeeCC---CCEEEEEECCCCCeEEE
Q 014934 321 HSTQP--VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC-IRFWNTTTNTHLSCMDTG---SQVCNLVWSKNVNELVS 394 (415)
Q Consensus 321 ~~~~~--~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~-I~iwd~~t~~~~~~~~~~---~~V~~l~~s~~~~~l~s 394 (415)
...+. -..+..|...|.+++.+-+|. ++|+++ ..|+ |||||..+|+.++++..+ ..|++++|||+..+|++
T Consensus 167 ~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaS--tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 167 ASTKPNAPSIINAHDSDIACVALNLQGT-LVATAS--TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred hhcCcCCceEEEcccCceeEEEEcCCcc-EEEEec--cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence 87654 467779999999999999997 999987 5554 899999999999999754 56999999999999999
Q ss_pred EEecCCCcEEEEECCC
Q 014934 395 THGYSQNQIIVWRYPT 410 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s 410 (415)
.++.|+|+|+.+..
T Consensus 244 --sSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 244 --SSDKGTLHIFSLRD 257 (346)
T ss_pred --EcCCCeEEEEEeec
Confidence 67899999998864
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-15 Score=132.78 Aligned_cols=181 Identities=21% Similarity=0.266 Sum_probs=140.1
Q ss_pred CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC---CC-----eeeEEecC
Q 014934 178 HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS---RC-----KRVRTMEG 248 (415)
Q Consensus 178 ~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~---~~-----~~~~~l~~ 248 (415)
..+|+++ .|..|.||++. |+....+. .....-+..+.+|+|+++|+++..-.|++|.+- .| +.+-.+++
T Consensus 199 ~k~imsas~dt~i~lw~lk-Gq~L~~id-tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 199 AKYIMSASLDTKICLWDLK-GQLLQSID-TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred ceEEEEecCCCcEEEEecC-Cceeeeec-cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 4566665 68899999998 77766665 233455677899999999999999999999872 22 34456789
Q ss_pred CCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCC------ccEE----EeccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 249 HRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE------DFVS----KLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 249 h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~------~~~~----~~~~h~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
|+..|..++|++ ..+++.+.||++++||+.-.- ..+. .+..-.++-+.|+++|+|+.||.+.. ..|.
T Consensus 277 H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~ 355 (420)
T KOG2096|consen 277 HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLK 355 (420)
T ss_pred chhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceE
Confidence 999999999994 799999999999999986321 1111 12223445568999999999988654 4699
Q ss_pred EEECCCCceeEEec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 317 VWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 317 iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
+|..++++..-.++ .|...|.+|+|+++|+ .++++| |+.++++.-
T Consensus 356 ~~~se~g~~~~~~e~~h~~~Is~is~~~~g~-~~atcG---dr~vrv~~n 401 (420)
T KOG2096|consen 356 VFASEDGKDYPELEDIHSTTISSISYSSDGK-YIATCG---DRYVRVIRN 401 (420)
T ss_pred EEEcccCccchhHHHhhcCceeeEEecCCCc-EEeeec---ceeeeeecC
Confidence 99999988776665 5999999999999998 677775 899998763
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-15 Score=149.56 Aligned_cols=226 Identities=21% Similarity=0.341 Sum_probs=167.0
Q ss_pred cEEEEEcCCeEEEEECCCC--CeEEeEe----c-----CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 179 NVLAVGLGNCVYLWNACSS--KVTKLCD----L-----GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~--~~~~~~~----~-----~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
-+|+++.||.|+||+-.-. +..++.. + +..+.=.-+.|-....+|.+++.-..|+|||.....++..+.
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP 1204 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP 1204 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc
Confidence 4666678999999974322 2122211 0 112222556788766666666667899999999888777765
Q ss_pred -CCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCc--cEEEeccccCC--eEEEEEeCCCCE-EEEEeCCCcEEEE
Q 014934 248 -GHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQED--FVSKLSGHKSE--VCGLKWSYDNRE-LASGGNDNRLFVW 318 (415)
Q Consensus 248 -~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~~--V~~l~~spdg~~-lasg~~dg~I~iw 318 (415)
+....|+++.-+ ++++++|..||.|++||.|.... .+.....|... |..+.+.+.|-- |++|+.||.|++|
T Consensus 1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE
Confidence 345567887765 68999999999999999997653 56778888877 999999986654 9999999999999
Q ss_pred ECCCCce--eEEeccCC---CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--------CCCCEEEEEE
Q 014934 319 NQHSTQP--VLKYCEHT---AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--------TGSQVCNLVW 385 (415)
Q Consensus 319 d~~~~~~--~~~~~~h~---~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--------~~~~V~~l~~ 385 (415)
|++.... ...+..|- +.++++..+++.. ++|+|+ . +.|+||++. |+.+..+. ....+.+++|
T Consensus 1285 DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs--~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1285 DLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGS--A-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred ecccCcccccceeeeccccCccceeeeeccCCC-eeeecC--c-ceEEEEecC-hhhhcccccCcccccCcCCCcceeee
Confidence 9987422 12222332 3599999999987 999986 4 999999986 44444443 1245789999
Q ss_pred CCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 386 SKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 386 s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+|..-.|++ |+.|+.|.||..+..
T Consensus 1360 HP~~~llAa--G~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1360 HPHRLLLAA--GSADSTVSIYSCEKP 1383 (1387)
T ss_pred cchhHhhhh--ccCCceEEEeecCCc
Confidence 999988888 899999999998754
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=140.59 Aligned_cols=185 Identities=24% Similarity=0.394 Sum_probs=149.2
Q ss_pred CCCeEEEEEcCCCC-eEEEEECCCcEEEEECCCC---------eeeEEecCCCccEEEEEeeC--CEEEEEeCCCcEEEE
Q 014934 208 DDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRC---------KRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQR 275 (415)
Q Consensus 208 ~~~V~~v~~sp~g~-~la~g~~dg~V~iwd~~~~---------~~~~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iw 275 (415)
..+|.++.|.++.. .||+|+.|..|+||-+..+ +.+..+..|...|+++.|++ ++|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 57899999998766 9999999999999987542 23456778999999999994 699999999999999
Q ss_pred ECC--------C-----CC--ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEE
Q 014934 276 DIR--------A-----QE--DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIA 340 (415)
Q Consensus 276 d~~--------~-----~~--~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 340 (415)
-.. + .+ .....+.+|..+|..++|+|+++++++|+.|+.+++||+..|+.+..+.+|...|..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 765 2 11 13456678999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--------------------C----CCCEEEEEECCCCCeEEEE
Q 014934 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--------------------T----GSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 341 ~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--------------------~----~~~V~~l~~s~~~~~l~s~ 395 (415)
|.|.+.++ ++-+ .|+..+.+.+...+.++.+. + .+....++|+|+|..|++-
T Consensus 173 wDpl~qyv-~s~s--~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 173 WDPLNQYV-ASKS--SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred cchhhhhh-hhhc--cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence 99998744 4443 57777777766544333221 0 1224568999999999873
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-14 Score=134.82 Aligned_cols=225 Identities=12% Similarity=0.124 Sum_probs=151.4
Q ss_pred EEEEcCCeEEEEECCC-CCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCC-Cee--eEEecCCCccEEE
Q 014934 181 LAVGLGNCVYLWNACS-SKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASR-CKR--VRTMEGHRLRVGA 255 (415)
Q Consensus 181 la~~~d~~V~iwd~~~-~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~-~~~--~~~l~~h~~~V~~ 255 (415)
++.+.++.|++|++.+ +++..+..+...+....++++|++++|++++ .++.|.+|++.. ++. +.... ..+....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceE
Confidence 3334678999999964 4443333334456788899999999987765 478899999963 332 22222 2334667
Q ss_pred EEee--CCEEEEEe-CCCcEEEEECCCCCc---cEEEeccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeE-
Q 014934 256 LAWS--SSLLSSGS-RDKSILQRDIRAQED---FVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHSTQPVL- 327 (415)
Q Consensus 256 l~~~--~~~l~sgs-~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg~~lasg~-~dg~I~iwd~~~~~~~~- 327 (415)
++++ +++|++++ .++.|.+||+..... .+..+. +.....+++++|+++++++++ .++.|.+||+.+...+.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 8888 45666665 488999999974321 122222 334567789999999886544 66999999997633221
Q ss_pred ------EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC--Cc--EEEEeeC-------CCCEEEEEECCCCC
Q 014934 328 ------KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT--NT--HLSCMDT-------GSQVCNLVWSKNVN 390 (415)
Q Consensus 328 ------~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t--~~--~~~~~~~-------~~~V~~l~~s~~~~ 390 (415)
.. ........++|+|++++++++.. .++.|.+|++.. ++ .+..+.. ......+.++|+++
T Consensus 164 ~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~--~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 164 QEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNE--LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred cCCCceec-CCCCCCceEEECCCCCEEEEEec--CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 11 12344678999999998877765 589999999973 33 3333321 11234688999999
Q ss_pred eEEEEEecCCCcEEEEECCCC
Q 014934 391 ELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 391 ~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+|+++ ...++.|.+|++.+.
T Consensus 241 ~lyv~-~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 241 HLYAC-DRTASLISVFSVSED 260 (330)
T ss_pred EEEEe-cCCCCeEEEEEEeCC
Confidence 99985 345789999998543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.5e-15 Score=132.18 Aligned_cols=200 Identities=18% Similarity=0.232 Sum_probs=161.8
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC---eeeEEecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCC-
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---KRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE- 281 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~---~~~~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~- 281 (415)
..+|+|.+|++|+..+|++..+..|.||..... +..++++.|...|++++|++ +.|++|+.|+.-++|....+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 478999999999999999999999999998654 57788999999999999994 789999999999999985543
Q ss_pred -ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee----EEeccCCCcEEEEEEcCCCCcEEEEEcCCC
Q 014934 282 -DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV----LKYCEHTAAVKAIAWSPHLHGLLASGGGTA 356 (415)
Q Consensus 282 -~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~----~~~~~h~~~V~~l~~sp~~~~llasggg~~ 356 (415)
.+...+..+....+++.|+|.++.||+|+.-..|.||-.+...-- +.-+.+...|.++.|+|++- ||++|+ .
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs--~ 166 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGS--T 166 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecccc--c
Confidence 233455678889999999999999999999999999988654322 12235778899999999864 777776 8
Q ss_pred CCeEEEEECC-----C-------------CcEEEEe-eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 357 DRCIRFWNTT-----T-------------NTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 357 d~~I~iwd~~-----t-------------~~~~~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
|+..|+|..- . |+++.+. ..++.|..+.|+|+|..|+- -+.|..+.+=|.....
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~law--v~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAW--VGHDSTVSFVDAAGPS 239 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeE--ecCCCceEEeecCCCc
Confidence 9999999652 1 2233334 35678999999999999998 4578899888876543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-14 Score=143.44 Aligned_cols=205 Identities=16% Similarity=0.089 Sum_probs=141.1
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC---CcEEEEECCCCee--eEEecCCCccEEEEEee--
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASRCKR--VRTMEGHRLRVGALAWS-- 259 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d---g~V~iwd~~~~~~--~~~l~~h~~~V~~l~~~-- 259 (415)
..|++||........+. .+...+.+..|+|||++|+.++.+ ..|.+||+.+++. +..+.+| ...++|+
T Consensus 184 ~~i~i~d~dg~~~~~lt--~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 184 YEVRVADYDGFNQFIVN--RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred EEEEEECCCCCCceEec--cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 58999998776643332 566789999999999999987654 3699999988753 3334444 3467888
Q ss_pred CCEEEEE-eCCCcEEEE--ECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCCC-ceeEEeccCCC
Q 014934 260 SSLLSSG-SRDKSILQR--DIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHST-QPVLKYCEHTA 334 (415)
Q Consensus 260 ~~~l~sg-s~dg~I~iw--d~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~-~dg~I~iwd~~~~-~~~~~~~~h~~ 334 (415)
++.|+.+ +.+|.+.+| |+..+. ...+..+...+....|+|||+.|+.++ .++...||++... .....+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~ 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC
Confidence 4566655 468875555 665544 455666777888999999999877655 5677777776432 222333 4443
Q ss_pred cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 335 ~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
..++|+|+|+.+++++ .++ +.+||+.+++....... .....+.|+|+|+.|+. ++.++.+.+|.+
T Consensus 336 --~~~~~SpDG~~ia~~~---~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~--~s~~g~~~~l~~ 400 (429)
T PRK01742 336 --YSAQISADGKTLVMIN---GDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIY--SSTQGLGKVLQL 400 (429)
T ss_pred --CCccCCCCCCEEEEEc---CCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEE--EEcCCCceEEEE
Confidence 4578999999665554 344 66699999876533222 23456889999999998 446777777765
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6e-14 Score=143.38 Aligned_cols=236 Identities=18% Similarity=0.232 Sum_probs=173.3
Q ss_pred eeEeecCC-CcEEEEEcC-CeEEEEECCCCCeEEeEecC--CCCCeEEEEEcC--CCCeEEEEECCCcEEEEECC-----
Q 014934 170 LNLVDWSS-HNVLAVGLG-NCVYLWNACSSKVTKLCDLG--IDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDAS----- 238 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d-~~V~iwd~~~~~~~~~~~~~--~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~----- 238 (415)
-..+.++| ...++++.| ..|.+||.+.++...-+..+ ....|+.+.+-. |..++++|+.||.|+||+--
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~ 1146 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK 1146 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC
Confidence 34567788 667777764 68999999999887766542 256799999875 45689999999999999742
Q ss_pred CCeeeEEecC-------CCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEe-CCCCEEEE
Q 014934 239 RCKRVRTMEG-------HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS-YDNRELAS 308 (415)
Q Consensus 239 ~~~~~~~l~~-------h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las 308 (415)
+.+.+....+ ..+.-.-++|. ...|++++.-+.|+|||......+.....+...-|+++.-+ +.|+.+|+
T Consensus 1147 ~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~A 1226 (1387)
T KOG1517|consen 1147 KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAA 1226 (1387)
T ss_pred CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEE
Confidence 2234433321 11122345676 45666666789999999987764333444555567777654 35799999
Q ss_pred EeCCCcEEEEECCCC---ceeEEeccCCCc--EEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE--EEee----CC
Q 014934 309 GGNDNRLFVWNQHST---QPVLKYCEHTAA--VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL--SCMD----TG 377 (415)
Q Consensus 309 g~~dg~I~iwd~~~~---~~~~~~~~h~~~--V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~--~~~~----~~ 377 (415)
|..||.|++||.+.. ..+..++.|+.. |..+.+.+.|-.-|++|+ .||.|++||++..... ..+. .+
T Consensus 1227 GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1227 GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec--cCCeEEEEecccCcccccceeeeccccC
Confidence 999999999998865 356777889888 999999998876677777 8999999999974221 1222 35
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+.++++..+++...+++ |+. +.|+||++..
T Consensus 1305 s~lTal~VH~hapiiAs--Gs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIAS--GSA-QLIKIYSLSG 1334 (1387)
T ss_pred ccceeeeeccCCCeeee--cCc-ceEEEEecCh
Confidence 67999999999999998 665 8999999864
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=136.50 Aligned_cols=198 Identities=16% Similarity=0.279 Sum_probs=150.3
Q ss_pred CCcceeEeecCCC--cEEE-EEcCCeEEEEECCCCCeEEeEec--CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC
Q 014934 166 DDFYLNLVDWSSH--NVLA-VGLGNCVYLWNACSSKVTKLCDL--GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 166 ~~~~i~~l~ws~~--~~la-~~~d~~V~iwd~~~~~~~~~~~~--~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~ 240 (415)
.+..||.+.+.|. ++|. ++.|..|++||+++..++.++-- +|.+.|.++.|+.+|.+|++|+.|-.+++|++...
T Consensus 134 hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 134 HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 3456899999993 3444 44689999999999998887743 78999999999999999999999999999998631
Q ss_pred e------e-------------------eE---EecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCc----------
Q 014934 241 K------R-------------------VR---TMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQED---------- 282 (415)
Q Consensus 241 ~------~-------------------~~---~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~---------- 282 (415)
+ + .. +-.-|...|-|+.|-++++++-+-++.|..|.....++
T Consensus 214 ~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es 293 (385)
T KOG1034|consen 214 EFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPES 293 (385)
T ss_pred HHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCcc
Confidence 1 0 00 11247888999999999999999999999998732111
Q ss_pred ---cEEEeccccCCeEEEEE--eCCCCEEEEEeCCCcEEEEECCCCcee--EEec--cCCCcEEEEEEcCCCCcEEEEEc
Q 014934 283 ---FVSKLSGHKSEVCGLKW--SYDNRELASGGNDNRLFVWNQHSTQPV--LKYC--EHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 283 ---~~~~~~~h~~~V~~l~~--spdg~~lasg~~dg~I~iwd~~~~~~~--~~~~--~h~~~V~~l~~sp~~~~llasgg 353 (415)
.+..+.-....|.-+.| .|-++.||.|...|.|++||++...+. .++. .....|...+|+.++..|++.+
T Consensus 294 ~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc- 372 (385)
T KOG1034|consen 294 ATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC- 372 (385)
T ss_pred ceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEe-
Confidence 12223333445555554 567889999999999999999987653 1221 2346789999999999777776
Q ss_pred CCCCCeEEEEECC
Q 014934 354 GTADRCIRFWNTT 366 (415)
Q Consensus 354 g~~d~~I~iwd~~ 366 (415)
.|++|.-||..
T Consensus 373 --dd~~Vwrwdrv 383 (385)
T KOG1034|consen 373 --DDGTVWRWDRV 383 (385)
T ss_pred --CCCcEEEEEee
Confidence 59999999864
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-15 Score=142.63 Aligned_cols=206 Identities=20% Similarity=0.269 Sum_probs=157.4
Q ss_pred CCCcceeEeecCC-CcEEEEEcC-CeEEEEECCCCCeEEeEecCCCCCeEEEEEcC--CCCeEEEEECCCcEEEEECCCC
Q 014934 165 QDDFYLNLVDWSS-HNVLAVGLG-NCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 165 ~~~~~i~~l~ws~-~~~la~~~d-~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~~~ 240 (415)
...-+|||++|+. +.+|+.|+| -.+.|||.-..+....+..+|...|.++.|-| +...+++|..|..|+++|+...
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 3456899999999 899999976 57999999988988888889999999999999 4568999999999999999742
Q ss_pred ----------eeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEe---------ccccCCeEEEE
Q 014934 241 ----------KRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKL---------SGHKSEVCGLK 298 (415)
Q Consensus 241 ----------~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~---------~~h~~~V~~l~ 298 (415)
...+.+..|..+|..|+-. |+.+.+++.||+|+.+|+|....+.... ...--+..++.
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lt 207 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLT 207 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeee
Confidence 2334455688888888876 5899999999999999999754222111 11223567889
Q ss_pred EeC-CCCEEEEEeCCCcEEEEECCC--------C----------ceeEEec-cCC-----------CcEEEEEEcCCCCc
Q 014934 299 WSY-DNRELASGGNDNRLFVWNQHS--------T----------QPVLKYC-EHT-----------AAVKAIAWSPHLHG 347 (415)
Q Consensus 299 ~sp-dg~~lasg~~dg~I~iwd~~~--------~----------~~~~~~~-~h~-----------~~V~~l~~sp~~~~ 347 (415)
++| +..+||+|+.|--.++||.+. + .++..|. +|. ..++-++|+|+|..
T Consensus 208 isp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtE 287 (758)
T KOG1310|consen 208 ISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTE 287 (758)
T ss_pred ecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcE
Confidence 998 456799999999999999432 1 1222221 121 12466899999999
Q ss_pred EEEEEcCCCCCeEEEEECCCCcEEEE
Q 014934 348 LLASGGGTADRCIRFWNTTTNTHLSC 373 (415)
Q Consensus 348 llasggg~~d~~I~iwd~~t~~~~~~ 373 (415)
||++-+ ...|+++|+..++....
T Consensus 288 lLvs~~---gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 288 LLVSWG---GEHVYLFDVNEDKSPTP 310 (758)
T ss_pred EEEeeC---CeEEEEEeecCCCCcee
Confidence 999986 56899999988765443
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-14 Score=137.56 Aligned_cols=206 Identities=15% Similarity=0.240 Sum_probs=153.3
Q ss_pred CcEEEEEcCCeEEEEECCCCCeE----EeEecCCCCCeEEEEE-----cCCCCeEEEEECCCcEEEEECCCCeeeEEec-
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVT----KLCDLGIDDSVCSVGW-----ANRNTHLAVGTSHGKVQIWDASRCKRVRTME- 247 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~----~~~~~~~~~~V~~v~~-----sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~- 247 (415)
+..|+...+..+|+|+...+... ....+. ....+|-+| .++|--|++|-..|.|++.|....+..+.+.
T Consensus 135 gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~-gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne 213 (636)
T KOG2394|consen 135 GDRLCFNVGRELYVYSYRGAADLSKPIDKREYK-GTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNE 213 (636)
T ss_pred CCEEEEecCCeEEEEEccCcchhccchhhhccc-CCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhh
Confidence 67788888889999988743211 111111 223344444 3567788999999999999986633222121
Q ss_pred ---CCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCC---------------------------ccEEEeccccCCe
Q 014934 248 ---GHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQE---------------------------DFVSKLSGHKSEV 294 (415)
Q Consensus 248 ---~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~---------------------------~~~~~~~~h~~~V 294 (415)
-....|+|+.|- +..++.+-.+|.+++||..... .++..+.-....|
T Consensus 214 ~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~i 293 (636)
T KOG2394|consen 214 ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSI 293 (636)
T ss_pred cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccc
Confidence 134789999997 4788889999999999864210 1122222234578
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 295 CGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 295 ~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
..++|+|||++||+.+.||.++|||..+.+.+-.++..-+...|++|+|||+ ++++|| +|..|.||.+..++.+..=
T Consensus 294 n~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGK-yIvtGG--EDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 294 NEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGK-YIVTGG--EDDLVTVWSFEERRVVARG 370 (636)
T ss_pred cceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCcc-EEEecC--CcceEEEEEeccceEEEec
Confidence 8999999999999999999999999999888877777788999999999998 778887 9999999999998887654
Q ss_pred e-CCCCEEEEEECC
Q 014934 375 D-TGSQVCNLVWSK 387 (415)
Q Consensus 375 ~-~~~~V~~l~~s~ 387 (415)
+ |.+.|..++|.|
T Consensus 371 qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 371 QGHKSWVSVVAFDP 384 (636)
T ss_pred cccccceeeEeecc
Confidence 3 788999999983
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-14 Score=125.23 Aligned_cols=138 Identities=15% Similarity=0.336 Sum_probs=104.0
Q ss_pred cEEEEECCCCCccEEEec-cccCCeEEEEEeCCCCEEEEE--eCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCc
Q 014934 271 SILQRDIRAQEDFVSKLS-GHKSEVCGLKWSYDNRELASG--GNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHG 347 (415)
Q Consensus 271 ~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~lasg--~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 347 (415)
...+|.++........+. ...++|.+++|+|+|+.||+. ..++.|.+||++ ++.+..+. ...+..+.|+|+|+.
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~ 114 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRF 114 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCE
Confidence 345555544433344443 234579999999999998764 456799999996 66777763 567789999999997
Q ss_pred EEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEec----CCCcEEEEECCCCcc
Q 014934 348 LLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY----SQNQIIVWRYPTMSK 413 (415)
Q Consensus 348 llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~----~dg~I~vw~~~s~~~ 413 (415)
++++|-|...|.|.+||+.+.+.+...++.. +..++|+|+|++|+++... .|+.++||++. +++
T Consensus 115 l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~ 182 (194)
T PF08662_consen 115 LVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRL 182 (194)
T ss_pred EEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeE
Confidence 7766645567889999999999988876654 7889999999999997432 48999999995 443
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-13 Score=134.52 Aligned_cols=217 Identities=13% Similarity=0.132 Sum_probs=154.4
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC---CCcEEEEECCCCeeeEEecCCCccEEEEEee--CCE
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS---HGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSL 262 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~---dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~ 262 (415)
.|++||........+. .+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+ ++.
T Consensus 183 ~l~~~d~dg~~~~~lt--~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQDGANVRYLT--DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCCCCCcEEEe--cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 7999998776665544 56678999999999999988764 467999999887653 445566677788898 444
Q ss_pred E-EEEeCCCc--EEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-C--CcEEEEECCCCceeEEeccCCCcE
Q 014934 263 L-SSGSRDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-D--NRLFVWNQHSTQPVLKYCEHTAAV 336 (415)
Q Consensus 263 l-~sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-d--g~I~iwd~~~~~~~~~~~~h~~~V 336 (415)
| ++.+.++. |++||+.++. ...+..+........|+|||+.|+..+. + ..|++||+.+++. ..+..+...+
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~ 336 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRY 336 (435)
T ss_pred EEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcc
Confidence 4 56666665 7778888765 4556666666778999999999887764 2 3689999876654 3444445567
Q ss_pred EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCC----CcEEEEECCCC
Q 014934 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ----NQIIVWRYPTM 411 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~d----g~I~vw~~~s~ 411 (415)
....|+|+|+.++.+.....+..|.+||+.++.. ..+..+..+....|+|||+.|+.++.... ..|.++++...
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 7789999999777765321235788999866543 34444445778999999999887533221 36778887653
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-12 Score=119.77 Aligned_cols=195 Identities=17% Similarity=0.182 Sum_probs=152.4
Q ss_pred CCCCcceeEeecCCCcEEEEEcC--CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 164 LQDDFYLNLVDWSSHNVLAVGLG--NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 164 l~~~~~i~~l~ws~~~~la~~~d--~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
...+.+|.-+-|+..-+..++.+ ..+++++.+.+..+..+. ....|.+|.++ .++|+++-.+ .|.|||+++.+
T Consensus 43 ~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~Mk 117 (391)
T KOG2110|consen 43 DTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMK 117 (391)
T ss_pred cCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEc--cceEEEEEcc-cEEEEecccce
Confidence 34566777777887766666654 469999988777665554 35689999986 4577777665 49999999999
Q ss_pred eeEEecC---CCccEEEEEeeC--CEEEEE--eCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 242 RVRTMEG---HRLRVGALAWSS--SLLSSG--SRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 242 ~~~~l~~---h~~~V~~l~~~~--~~l~sg--s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
.+.++.. +...+.++..+. .+|+-- ...|.|.+||..+-. .+..+..|++++.+|+|+++|.+||+++..|+
T Consensus 118 lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~-~v~~I~aH~~~lAalafs~~G~llATASeKGT 196 (391)
T KOG2110|consen 118 LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ-PVNTINAHKGPLAALAFSPDGTLLATASEKGT 196 (391)
T ss_pred eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce-eeeEEEecCCceeEEEECCCCCEEEEeccCce
Confidence 8888763 455677777773 466543 346899999998876 67888999999999999999999999999996
Q ss_pred -EEEEECCCCceeEEeccCC--CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 315 -LFVWNQHSTQPVLKYCEHT--AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 315 -I~iwd~~~~~~~~~~~~h~--~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t 367 (415)
|+||.+.+|+.+.+|+--. ..|.+|+|+|++..|.+++ ..++|++|.+..
T Consensus 197 VIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS---~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 197 VIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS---NTETVHIFKLEK 249 (391)
T ss_pred EEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec---CCCeEEEEEecc
Confidence 7899999999999997433 4578999999998444444 689999998863
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-14 Score=126.59 Aligned_cols=223 Identities=17% Similarity=0.270 Sum_probs=169.9
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEEEEECCCCC-eEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC-CCC--e
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSK-VTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA-SRC--K 241 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~-~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~-~~~--~ 241 (415)
.|+|.+|++ ...+|++. ...|.||.....+ ......+ .|...|++|+|+|..+.|++|+.|..-++|.. ..+ +
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wk 91 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWK 91 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeec
Confidence 488999999 67788885 4589999887776 2222222 78899999999999999999999999999998 333 4
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc---EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF---VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
+...+..+...++++.|+ .+.|++|+..+.|.+|-.+..+.- .+.-+.+...|.++.|+|++-+||+|+.|+.++
T Consensus 92 ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~r 171 (361)
T KOG1523|consen 92 PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCR 171 (361)
T ss_pred cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCccee
Confidence 455566789999999999 489999999999999988766532 223346778899999999999999999999999
Q ss_pred EEECC-----C-------------CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-EEEEee-C
Q 014934 317 VWNQH-----S-------------TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCMD-T 376 (415)
Q Consensus 317 iwd~~-----~-------------~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-~~~~~~-~ 376 (415)
||..- . |+.+.++....+.|..+.|+|.|..|.-.+ .|..+.+-|..... .+..+. .
T Consensus 172 VfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~---Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 172 VFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG---HDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred EEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec---CCCceEEeecCCCchhccchhhc
Confidence 99741 1 123444445667899999999998555544 79999999987654 334433 2
Q ss_pred CCCEEEEEECCCCCeEEE
Q 014934 377 GSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 377 ~~~V~~l~~s~~~~~l~s 394 (415)
.-+..++.|-.+...+++
T Consensus 249 ~lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 249 QLPLLSVSWISENSVVAA 266 (361)
T ss_pred cCCceeeEeecCCceeec
Confidence 245667777666655544
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.6e-14 Score=129.99 Aligned_cols=211 Identities=15% Similarity=0.210 Sum_probs=169.2
Q ss_pred cCCCcEEEEEcCCeEEEEECCCCC-----eEEeEecCCCCCeEEEEEcCCC-CeEEEEECC--CcEEEEECCCCeeeEEe
Q 014934 175 WSSHNVLAVGLGNCVYLWNACSSK-----VTKLCDLGIDDSVCSVGWANRN-THLAVGTSH--GKVQIWDASRCKRVRTM 246 (415)
Q Consensus 175 ws~~~~la~~~d~~V~iwd~~~~~-----~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~d--g~V~iwd~~~~~~~~~l 246 (415)
...+.++++-.+|.+.+|....+. ...+. ....+..+.-++.. ..+|+|+.. ..+.|||+++.+.+-.-
T Consensus 113 ~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la---~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~a 189 (412)
T KOG3881|consen 113 LADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA---TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSA 189 (412)
T ss_pred hcCCEEEEEecCCcEEEEeccCCccccccceeee---cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeec
Confidence 334556666678999999988443 33332 23677778777754 456668888 78999999988555433
Q ss_pred cCC---------CccEEEEEee----CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC
Q 014934 247 EGH---------RLRVGALAWS----SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN 313 (415)
Q Consensus 247 ~~h---------~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg 313 (415)
+.- .-.++++.|- +..|++++.-+.+++||.+.+..++..+.--..+|+++...|+++++++|..-+
T Consensus 190 KNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g 269 (412)
T KOG3881|consen 190 KNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKG 269 (412)
T ss_pred cCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccc
Confidence 211 1234455564 368999999999999999999888988888888999999999999999999999
Q ss_pred cEEEEECCCCceeEE-eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCe
Q 014934 314 RLFVWNQHSTQPVLK-YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNE 391 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~-~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~ 391 (415)
.+..||++.++.+.. +.+-.+.|.+|..+|..+ +++++| .|+.+||+|+.+.+++..+..++.++++.+.++-+.
T Consensus 270 ~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~G--LDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~n~ 345 (412)
T KOG3881|consen 270 QLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCG--LDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDVNI 345 (412)
T ss_pred hhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeec--cceeEEEeecccchhhhhhhhhccccEEEecCCccc
Confidence 999999999988766 888999999999999876 888887 999999999999998888888899999988776443
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-15 Score=141.60 Aligned_cols=228 Identities=19% Similarity=0.314 Sum_probs=187.6
Q ss_pred CcceeEeecCC-Cc-EEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~-~~-~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
+|.-..++++. +. +|+.|..|.|..+|..++++...+. -...|.++.|-.+.+++|++ ....+.|||- .|..++
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElH 204 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELH 204 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEe
Confidence 34455677776 55 4555567999999999998876664 45789999999999999986 5568999995 467778
Q ss_pred EecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 245 TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
.++.| ..|..+.|-| -+|++++..|.+..-|+..+. .+..+..-.+.+..++-+|-...+-+|...|+|.+|....
T Consensus 205 Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 205 CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred ehhhc-CchhhhcccchhheeeecccCCceEEEeechhh-hhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 88765 4588899986 467788899999999999987 5667777778899999999999999999999999999999
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCc
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
.+++.++-.|.++|.+|++.+.|. ++++.| .|+.++|||+++-..+.++.+......+++|..|. |+. |. ...
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~-YMaTtG--~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-LA~--~~-G~~ 355 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGR-YMATTG--LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-LAL--SY-GDH 355 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCc-EEeecc--cccceeEeeeccccccceeecCCCccccccccccc-eee--ec-CCe
Confidence 999999999999999999999998 555555 89999999999998888888888889999998885 444 22 237
Q ss_pred EEEEE
Q 014934 403 IIVWR 407 (415)
Q Consensus 403 I~vw~ 407 (415)
+.||.
T Consensus 356 v~iw~ 360 (545)
T KOG1272|consen 356 VQIWK 360 (545)
T ss_pred eeeeh
Confidence 88886
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-13 Score=137.45 Aligned_cols=234 Identities=20% Similarity=0.259 Sum_probs=172.5
Q ss_pred eecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCC---CeEEEEECCCcEEEEECCCCeeeEEecC
Q 014934 173 VDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN---THLAVGTSHGKVQIWDASRCKRVRTMEG 248 (415)
Q Consensus 173 l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g---~~la~g~~dg~V~iwd~~~~~~~~~l~~ 248 (415)
-.||+ +..+.+..+..|.||...+++++..+. +|...++++.+.|.. .++.+++.+|.|++||...+..++++..
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGECITSLE-DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHhhhhhcc-cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 34666 677888889999999999999988776 889999999998854 4778999999999999988887777653
Q ss_pred CCccEEEEEe--------------eC--C--------------------------------------------EEEEEeC
Q 014934 249 HRLRVGALAW--------------SS--S--------------------------------------------LLSSGSR 268 (415)
Q Consensus 249 h~~~V~~l~~--------------~~--~--------------------------------------------~l~sgs~ 268 (415)
+.. +.++.+ .. . .+.....
T Consensus 101 ~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~ 179 (792)
T KOG1963|consen 101 NLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH 179 (792)
T ss_pred CCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE
Confidence 211 111111 00 0 1111122
Q ss_pred CCcEEEEECCCCCccEE---EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC----CceeEEeccCCCcEEEEEE
Q 014934 269 DKSILQRDIRAQEDFVS---KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS----TQPVLKYCEHTAAVKAIAW 341 (415)
Q Consensus 269 dg~I~iwd~~~~~~~~~---~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~----~~~~~~~~~h~~~V~~l~~ 341 (415)
+..+.+|++........ .-..|...+++.++||.++++|+|..||+|.+|.--. ......+.-|...|.+++|
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f 259 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF 259 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEE
Confidence 33355666554331110 1124666689999999999999999999999997433 1234556679999999999
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+++|. .|.+|| ..+.+.+|.+.+++...--.-++.|..+.++||+...+.. ..|++|.+-..++|+.
T Consensus 260 S~~G~-~LlSGG--~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~--~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 260 SSDGA-YLLSGG--REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLV--LEDNQIHLIKASDLEI 326 (792)
T ss_pred ecCCc-eEeecc--cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEE--ecCceEEEEeccchhh
Confidence 99998 555665 8999999999999843333478999999999999988874 4699999999988753
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.6e-13 Score=133.36 Aligned_cols=216 Identities=13% Similarity=0.131 Sum_probs=149.4
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC---CcEEEEECCCCeeeEEecCCCccEEEEEee--CCE
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSL 262 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d---g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~ 262 (415)
.|++||........+. .+...+.+..|+|||+.|+.++.. ..|.+||+.+++... +..+.+...+..|+ ++.
T Consensus 185 ~l~i~D~~g~~~~~lt--~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 185 ALQVADSDGYNPQTIL--RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEECCCCCCceEee--cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 6999998766655544 456789999999999999988743 369999998776433 33344455678888 444
Q ss_pred E-EEEeCCC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-CC--cEEEEECCCCceeEEeccCCCcE
Q 014934 263 L-SSGSRDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-DN--RLFVWNQHSTQPVLKYCEHTAAV 336 (415)
Q Consensus 263 l-~sgs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-dg--~I~iwd~~~~~~~~~~~~h~~~V 336 (415)
| ++.+.+| .|++||+.++. ...+..+.......+|+|||+.|+.++. +| .|+++|+.+++.. .+..+....
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~ 338 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYN 338 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCc
Confidence 4 4556666 59999998775 4455556555678899999999887764 34 4788888776543 333333445
Q ss_pred EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEec-CCCcEEEEECCC
Q 014934 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY-SQNQIIVWRYPT 410 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~-~dg~I~vw~~~s 410 (415)
..++|+|+|+.++++........|.+||+.+++.. .+..+.......|+|+|+.|+.+... ..+.|.+++...
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 57899999997777653112236999999888765 44344345678999999998875321 234677887754
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-14 Score=136.07 Aligned_cols=216 Identities=15% Similarity=0.312 Sum_probs=163.2
Q ss_pred eEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC-------CCCeEEEEECCCcEEEEECCCCee
Q 014934 171 NLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-------RNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 171 ~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-------~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.|++|+. ..++.++.|..+.+|+..+.+.............+.+-.-+ ....|++++.||.+.|.+ +.++.
T Consensus 18 c~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~rV 96 (737)
T KOG1524|consen 18 CCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-KSARV 96 (737)
T ss_pred EeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-ccchh
Confidence 4889988 67777777887777765554444444333333333332222 124788999999999987 45677
Q ss_pred eEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
-+.+..|.+.+.+-.|+ |.-|++++.||.|++|.-...- ..++......|.|++|.|+.+-++-+. .+.+.|=.+
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML--RStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL 173 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML--RSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPL 173 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH--HHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeec
Confidence 77888999999999999 5789999999999999865432 334444567899999999888776654 356777777
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEE
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~ 393 (415)
.....+.+.+.|.+-|.++.|++... ++++|| +|-..++||.....+...-.+..+|++++|.|+..+++
T Consensus 174 ~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgG--ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v 243 (737)
T KOG1524|consen 174 AANSKIIRWRAHDGLVLSLSWSTQSN-IIASGG--EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLL 243 (737)
T ss_pred ccccceeEEeccCcEEEEeecCcccc-ceeecC--CceeEEeecccCcccccCChhccceeeeeeccccceee
Confidence 77777788899999999999999876 999998 99999999987666666666889999999999944444
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.9e-13 Score=131.53 Aligned_cols=214 Identities=13% Similarity=0.074 Sum_probs=146.6
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC---CCcEEEEECCCCeeeEEecCCCccEEEEEee--CCE
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS---HGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSL 262 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~---dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~ 262 (415)
.|++||........+. .+...+.+.+|+|||+.||..+. +..|.+||+.+++... +....+.+..+.|+ ++.
T Consensus 180 ~l~~~d~dg~~~~~lt--~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCCEEee--cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence 7999998877665554 34578999999999999987643 3469999998775332 22233334567888 455
Q ss_pred EEE-EeCCC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC-C--cEEEEECCCCceeEEeccCCCcE
Q 014934 263 LSS-GSRDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N--RLFVWNQHSTQPVLKYCEHTAAV 336 (415)
Q Consensus 263 l~s-gs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d-g--~I~iwd~~~~~~~~~~~~h~~~V 336 (415)
|+. .+.+| .|++||+.++. ...+..+...+....|+|||+.|+..+.+ + .|+++|+.+++. ..+..+....
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~ 333 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQN 333 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCc
Confidence 554 45555 48999998765 34455555678889999999998877654 3 566668776654 3444444556
Q ss_pred EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCC---cEEEEECCC
Q 014934 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN---QIIVWRYPT 410 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg---~I~vw~~~s 410 (415)
....|+|+|+.++.++.......|.+||+.+++.. .+..........|+|||+.|+.+. .++ .+.++++..
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s--~~~~~~~l~~~~~~G 407 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSS--SQGMGSVLNLVSTDG 407 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEE--cCCCceEEEEEECCC
Confidence 67899999997776654222356899999988754 333333345688999999998853 333 477777653
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=127.66 Aligned_cols=159 Identities=14% Similarity=0.253 Sum_probs=130.1
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC------CCeeeEEec-CCCccEEEEEee--CCEEEEEeCCCcEEEEE
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS------RCKRVRTME-GHRLRVGALAWS--SSLLSSGSRDKSILQRD 276 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~------~~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd 276 (415)
+|.+.|.++.|+.++++||+|+.|..+++|++. +.+++..+. .|...|.|++|+ ..++++|+++++|...|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 789999999999999999999999999999985 345665554 356899999999 57899999999999999
Q ss_pred CCCCCccEEEec--cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-e--eEEeccCCCcEEEEEEcCCCCcEEEE
Q 014934 277 IRAQEDFVSKLS--GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-P--VLKYCEHTAAVKAIAWSPHLHGLLAS 351 (415)
Q Consensus 277 ~~~~~~~~~~~~--~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~-~--~~~~~~h~~~V~~l~~sp~~~~llas 351 (415)
+.+.+. +..+. ...+.|..+..+|..+.|++.+.++.|.+||.+... + +............+-|+|....||++
T Consensus 134 iEt~qs-i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 134 IETKQS-IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred ccccee-eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 998873 33322 234589999999999999999999999999998654 2 22233445667889999999989998
Q ss_pred EcCCCCCeEEEEECCC
Q 014934 352 GGGTADRCIRFWNTTT 367 (415)
Q Consensus 352 ggg~~d~~I~iwd~~t 367 (415)
.+ ..+-+-+||.+.
T Consensus 213 ~~--~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 213 NS--ETGGPNVFDRRM 226 (609)
T ss_pred cc--ccCCCCceeecc
Confidence 87 778889999863
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-13 Score=125.02 Aligned_cols=235 Identities=17% Similarity=0.206 Sum_probs=171.5
Q ss_pred CcceeEeecCC-CcEEEEEcC-CeEEEEECCC------CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC
Q 014934 167 DFYLNLVDWSS-HNVLAVGLG-NCVYLWNACS------SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d-~~V~iwd~~~------~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~ 238 (415)
.-+||.+.|+. +.+|+.|.| -.+.+|++.. .+.+.+....|...|.|++|.....+|.+|..+|+|.+.|++
T Consensus 56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE 135 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE 135 (609)
T ss_pred ccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecc
Confidence 34799999998 889998865 5899999753 355566655677999999999999999999999999999999
Q ss_pred CCeeeEEec--CCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccE--EEeccccCCeEEEEEeCC-CCEEEEEeC
Q 014934 239 RCKRVRTME--GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFV--SKLSGHKSEVCGLKWSYD-NRELASGGN 311 (415)
Q Consensus 239 ~~~~~~~l~--~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~h~~~V~~l~~spd-g~~lasg~~ 311 (415)
+.+.+..+. ...+.|..+..+| ++|++.+.+|.|.+||++...... ..+.........+.|+|. ..+|++.+.
T Consensus 136 t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~ 215 (609)
T KOG4227|consen 136 TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSE 215 (609)
T ss_pred cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccc
Confidence 988777665 2345899998884 899999999999999999765322 223334556778888884 466778888
Q ss_pred CCcEEEEECCCCc--------------------------------------------------eeEEeccCC-------C
Q 014934 312 DNRLFVWNQHSTQ--------------------------------------------------PVLKYCEHT-------A 334 (415)
Q Consensus 312 dg~I~iwd~~~~~--------------------------------------------------~~~~~~~h~-------~ 334 (415)
.+-+.+||.+... ++.++ .|. .
T Consensus 216 ~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~ 294 (609)
T KOG4227|consen 216 TGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIK 294 (609)
T ss_pred cCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec-cCCCCcceeee
Confidence 8888899875310 11111 122 1
Q ss_pred cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC----------c-------------EEEEe-eCCCCEEEEEECCCCC
Q 014934 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN----------T-------------HLSCM-DTGSQVCNLVWSKNVN 390 (415)
Q Consensus 335 ~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~----------~-------------~~~~~-~~~~~V~~l~~s~~~~ 390 (415)
.+++++|.-+ +-+++|+ .+-.|++|.+... . .+..+ .|.+-+..+.|+++..
T Consensus 295 T~KS~~F~~D--~~v~tGS--D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~ 370 (609)
T KOG4227|consen 295 TIKSMTFIDD--YTVATGS--DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN 370 (609)
T ss_pred eeeeeeeecc--eeeeccC--cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcc
Confidence 3455666644 3577766 8889999988531 1 11112 2567788899999998
Q ss_pred eEEEEEecCCCcEEEEEC
Q 014934 391 ELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 391 ~l~s~~g~~dg~I~vw~~ 408 (415)
.|++ .+-.+.|+||.-
T Consensus 371 ~l~S--SGVE~~~KlWS~ 386 (609)
T KOG4227|consen 371 LLVS--SGVENSFKLWSD 386 (609)
T ss_pred eEec--cchhhheecccc
Confidence 8887 456789999963
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-13 Score=135.26 Aligned_cols=237 Identities=18% Similarity=0.249 Sum_probs=163.5
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCC--C-C-eEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACS--S-K-VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~--~-~-~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~ 240 (415)
.|.++|.++|| ++++|++ .||.|.+|.--. + . ...++. -|.+.|++++|+++|.+|.+|+..|.+.+|.+.++
T Consensus 205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH-WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH-WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE-ecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 44478999999 8899988 589999997544 1 1 122222 57789999999999999999999999999999998
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec-----------cccCCeEEEEEeCCCCEEE
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS-----------GHKSEVCGLKWSYDNRELA 307 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----------~h~~~V~~l~~spdg~~la 307 (415)
+ ..-+..-.+.|..+.++ +++.+....|..|.+....+... ...+. ...+-.+.++++|.-+.++
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~-k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI-KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh-hhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 8 45566678899999998 57788888899998887643321 11111 1122345566666555555
Q ss_pred EEeCCCcEEEEECCCCceeEE-----------------------------------------------------------
Q 014934 308 SGGNDNRLFVWNQHSTQPVLK----------------------------------------------------------- 328 (415)
Q Consensus 308 sg~~dg~I~iwd~~~~~~~~~----------------------------------------------------------- 328 (415)
-.+..|.|.+||+-+.+.+.+
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 556666666666533111110
Q ss_pred ---------eccCCCcEEEEEEcCCCCc-EEEEEcCCCCCeEEEEECCCCcEEE---------Ee--eCCCCEEEEEECC
Q 014934 329 ---------YCEHTAAVKAIAWSPHLHG-LLASGGGTADRCIRFWNTTTNTHLS---------CM--DTGSQVCNLVWSK 387 (415)
Q Consensus 329 ---------~~~h~~~V~~l~~sp~~~~-llasggg~~d~~I~iwd~~t~~~~~---------~~--~~~~~V~~l~~s~ 387 (415)
...|...+.+.++.+-.+. ..++++ .||.++||-+...+.+. .+ -+..++.+++|+.
T Consensus 442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~--~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS--VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred ceeEEEEEEecCCCceeEEEEEecCcccceeEEec--cCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 1246666666665544333 666766 89999999884332111 11 1578899999999
Q ss_pred CCCeEEEEEecCCCcEEEEECCCC
Q 014934 388 NVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 388 ~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
||..|++ | .++.|.+||+.+.
T Consensus 520 dGslla~--s-~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 520 DGSLLAV--S-FDDTITIWDYDTK 540 (792)
T ss_pred CCcEEEE--e-cCCEEEEecCCCh
Confidence 9988877 4 4679999999884
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-14 Score=131.77 Aligned_cols=192 Identities=19% Similarity=0.228 Sum_probs=148.3
Q ss_pred EEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec-
Q 014934 212 CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS- 288 (415)
Q Consensus 212 ~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~- 288 (415)
.+++|+.+|..|++|+.||.+|||+..+...+.....|.+.|.+|.|+ +.+|++-+.| ...||+++++.. +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 889999999999999999999999988777777778899999999999 5799999999 899999999853 33222
Q ss_pred -cccCCeEEEEEeCCC-----CEEEEEeCCCcEEEEECCCCce-----eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCC
Q 014934 289 -GHKSEVCGLKWSYDN-----RELASGGNDNRLFVWNQHSTQP-----VLKYCEHTAAVKAIAWSPHLHGLLASGGGTAD 357 (415)
Q Consensus 289 -~h~~~V~~l~~spdg-----~~lasg~~dg~I~iwd~~~~~~-----~~~~~~h~~~V~~l~~sp~~~~llasggg~~d 357 (415)
.-......+.|+.|+ .+++....-+.|..||+...+. ..+...-...|.+++.+++|+ ++|.|+ .|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT--~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLALGT--MD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEEEec--cC
Confidence 223346667788776 3334444456677777643221 122222345799999999998 777765 89
Q ss_pred CeEEEEECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 358 RCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 358 ~~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
|.|-|++..+.++++.+. |...|+.+.|+|+.++++++ +.++.+.|..++-
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv--Ss~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV--SSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc--ccCCceeEEEEee
Confidence 999999999999888776 77889999999999999984 4677777776654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=137.16 Aligned_cols=208 Identities=15% Similarity=0.120 Sum_probs=143.2
Q ss_pred ceeEeecCC-CcEEEEEc-C---CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEE--ECCCC
Q 014934 169 YLNLVDWSS-HNVLAVGL-G---NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIW--DASRC 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d---~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iw--d~~~~ 240 (415)
.+..+.|+| ++.|+... + ..|++||+.+++...+..+ .+...+++|+|||+.|+++. .+|.+.|| |+.++
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~ 282 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF--RGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG 282 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC--CCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC
Confidence 466789999 66676653 2 3699999998876555432 23445789999999988875 68876665 55555
Q ss_pred eeeEEecCCCccEEEEEeeC--CEEE-EEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 014934 241 KRVRTMEGHRLRVGALAWSS--SLLS-SGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~~--~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~i 317 (415)
+ ...+..+...+....|++ ..|+ ++..+|...+|++.........+ .+.. ....|+|||++|+.++.++ +.+
T Consensus 283 ~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~ 357 (429)
T PRK01742 283 T-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVK 357 (429)
T ss_pred C-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEE
Confidence 4 455666777788899984 4444 55567888888775433223333 3433 4578999999999887765 667
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC--CCCcEEEEee-CCCCEEEEEECCC
Q 014934 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT--TTNTHLSCMD-TGSQVCNLVWSKN 388 (415)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~--~t~~~~~~~~-~~~~V~~l~~s~~ 388 (415)
||+.+++.......+ ....+.|+|+|+.++.++ .++.+.+|.+ .+|..+..+. +...+...+|+|-
T Consensus 358 ~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s---~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 358 QDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSS---TQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EECCCCCeEEecCCC--CCCCceECCCCCEEEEEE---cCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 999888654332222 335688999998555554 4777777775 3577777775 4566888999985
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-14 Score=135.62 Aligned_cols=163 Identities=21% Similarity=0.309 Sum_probs=125.6
Q ss_pred EEEEE-cCCeEEEEECCCCCeEEeEec---CCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCC--------------C
Q 014934 180 VLAVG-LGNCVYLWNACSSKVTKLCDL---GIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASR--------------C 240 (415)
Q Consensus 180 ~la~~-~d~~V~iwd~~~~~~~~~~~~---~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~--------------~ 240 (415)
-|.+| .-|.|++.+....++.+++.. -....|+|+.|-|.+ ..++++..+|.+.+||..- +
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 34455 458888888776555444432 124789999999954 4667778899999997521 1
Q ss_pred eeeEE--------------ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCC
Q 014934 241 KRVRT--------------MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR 304 (415)
Q Consensus 241 ~~~~~--------------l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 304 (415)
..... +.-..+.|...+|+ +.+|++.+.||.++|+|..+.+ ++..++..-+...|++|||||+
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDGK 345 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCcc
Confidence 11111 11123466777777 5899999999999999998876 5666666777899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcC
Q 014934 305 ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343 (415)
Q Consensus 305 ~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp 343 (415)
+|++|++|..|.||.+...+.+..-++|+..|..|+|.|
T Consensus 346 yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999999999999999984
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-12 Score=123.21 Aligned_cols=238 Identities=14% Similarity=0.135 Sum_probs=157.8
Q ss_pred EeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCeeeEEecC
Q 014934 172 LVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVRTMEG 248 (415)
Q Consensus 172 ~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~~~~l~~ 248 (415)
.+.+++ ++++.++ .|+.|.++|+.+.+++..+..+ ....++++++||++++++. ..+.|.++|.++.+.++.+..
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 456777 5555444 6899999999999998888654 5679999999999999876 588999999999998887753
Q ss_pred C-------CccEEEEEee--CC-EEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEE-eCCCcEEE
Q 014934 249 H-------RLRVGALAWS--SS-LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASG-GNDNRLFV 317 (415)
Q Consensus 249 h-------~~~V~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg-~~dg~I~i 317 (415)
. ..++.++..+ .. ++++--..+.|.+.|......................|+|++++|+++ ..++.|-+
T Consensus 119 ~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~v 198 (369)
T PF02239_consen 119 GGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAV 198 (369)
T ss_dssp -EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEE
T ss_pred ccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEE
Confidence 2 3467777655 23 444555558898889877654333333345567789999999987664 55678888
Q ss_pred EECCCCceeEEe-------------------------------------------------------ccCCCcEEEEEEc
Q 014934 318 WNQHSTQPVLKY-------------------------------------------------------CEHTAAVKAIAWS 342 (415)
Q Consensus 318 wd~~~~~~~~~~-------------------------------------------------------~~h~~~V~~l~~s 342 (415)
+|.++++.+..+ ...... .-+..+
T Consensus 199 iD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~th 277 (369)
T PF02239_consen 199 IDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTH 277 (369)
T ss_dssp EETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--
T ss_pred EeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecC
Confidence 998775433221 111112 346678
Q ss_pred CCCCcEEEE---EcCCCCCeEEEEECCCCcEEEEeeCC--CCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 343 PHLHGLLAS---GGGTADRCIRFWNTTTNTHLSCMDTG--SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 343 p~~~~llas---ggg~~d~~I~iwd~~t~~~~~~~~~~--~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
|+++++.+. +. ..+.|.++|..+.+.+..+..+ ..+..+.|+++|+++..+....++.|.|||..+++.+
T Consensus 278 P~s~~vwvd~~~~~--~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 278 PDSRYVWVDTFLNP--DADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp TT-SEEEEE-TT-S--SHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred CCCccEEeeccCCC--CCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 999988887 33 5789999999999888887643 3499999999999998876656669999999998753
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-13 Score=132.73 Aligned_cols=191 Identities=18% Similarity=0.325 Sum_probs=146.3
Q ss_pred CeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc-----
Q 014934 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED----- 282 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~----- 282 (415)
.|..++|-|||..|+.+..+ .+.+||...|..+.++++|...|.|++|+ |..+++|+.|+.|.+|...-...
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH 92 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH 92 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence 79999999999988886544 79999999999999999999999999998 79999999999999998653220
Q ss_pred --cEEE---------------------------ec--cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec-
Q 014934 283 --FVSK---------------------------LS--GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC- 330 (415)
Q Consensus 283 --~~~~---------------------------~~--~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~- 330 (415)
.++- .. .....|++.+|..||++||.|-.||+|.|-+. ++++...++
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~R 171 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIER 171 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeC
Confidence 0000 00 11235788899999999999999999999864 444433443
Q ss_pred --cCCCcEEEEEEcCCCC----cEEEEEcCCCCCeEEEEECCCCcEEE-EeeCCCCEEEEEECCCCCeEEEEEecCCCcE
Q 014934 331 --EHTAAVKAIAWSPHLH----GLLASGGGTADRCIRFWNTTTNTHLS-CMDTGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (415)
Q Consensus 331 --~h~~~V~~l~~sp~~~----~llasggg~~d~~I~iwd~~t~~~~~-~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I 403 (415)
+.+.+|.+++|+|... .+++... ...++.++.+. |+.+. .-.-+-..+++.+.++|.+++. |++|+.+
T Consensus 172 pgg~Nspiwsi~~~p~sg~G~~di~aV~D--W~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~Li--GGsdk~L 246 (1081)
T KOG1538|consen 172 PGGSNSPIWSICWNPSSGEGRNDILAVAD--WGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILL--GGSDKQL 246 (1081)
T ss_pred CCCCCCCceEEEecCCCCCCccceEEEEe--ccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEE--ccCCCce
Confidence 4788999999999743 2455554 56677777664 44443 2234556788999999999999 8899999
Q ss_pred EEEE
Q 014934 404 IVWR 407 (415)
Q Consensus 404 ~vw~ 407 (415)
++|-
T Consensus 247 ~~fT 250 (1081)
T KOG1538|consen 247 SLFT 250 (1081)
T ss_pred EEEe
Confidence 8875
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-15 Score=140.04 Aligned_cols=215 Identities=17% Similarity=0.241 Sum_probs=173.1
Q ss_pred EeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCC
Q 014934 172 LVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR 250 (415)
Q Consensus 172 ~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~ 250 (415)
.+.|-- .+++|++...-+||||-..-++.++- ....|..+.|-|---+|++++..|.+..-|+.+|+.+..+....
T Consensus 175 Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk---~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~ 251 (545)
T KOG1272|consen 175 DVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLK---RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA 251 (545)
T ss_pred hhhhhcchHHHHhhhhceEEEecCCCcEEeehh---hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC
Confidence 344433 67899999999999997665554443 34789999999999999999999999999999999999998888
Q ss_pred ccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 014934 251 LRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 251 ~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~ 328 (415)
+++..|+-+| ..+-+|...|+|.+|.....+ ++..+..|.++|.+|++.++|+++||.|.|..|+|||++....+++
T Consensus 252 G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske-PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t 330 (545)
T KOG1272|consen 252 GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE-PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHT 330 (545)
T ss_pred CccchhhcCCccceEEEcCCCceEEecCCCCcc-hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccce
Confidence 9999999985 578899999999999998887 5667788999999999999999999999999999999999877776
Q ss_pred eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE-CCCCc-----EEEEeeCCCCEEEEEECCCCCeEEEEE
Q 014934 329 YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN-TTTNT-----HLSCMDTGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 329 ~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd-~~t~~-----~~~~~~~~~~V~~l~~s~~~~~l~s~~ 396 (415)
+.. ......+++|.. .+||.+ ....+.||. ...+. +.-....+.+|..+.|.|-...|-.+|
T Consensus 331 ~~t-p~~a~~ls~Sqk--glLA~~---~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 331 YRT-PHPASNLSLSQK--GLLALS---YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred eec-CCCccccccccc--cceeee---cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 654 445677888855 477766 457899994 22211 111112456899999999988887744
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.7e-15 Score=146.96 Aligned_cols=201 Identities=19% Similarity=0.297 Sum_probs=155.7
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (415)
+|...|.|+.|...|.++++|+.|..|+||.+++..++..+.||.+.|+.++.+ .-.+++++.|..|++|.+..+. +
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~-p 266 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA-P 266 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc-h
Confidence 888999999999999999999999999999999999999999999999999998 4578899999999999999987 6
Q ss_pred EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC--------------ceeEEe--c--------c------CC
Q 014934 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST--------------QPVLKY--C--------E------HT 333 (415)
Q Consensus 284 ~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~--------------~~~~~~--~--------~------h~ 333 (415)
+..+.+|.+.|++++|+|-. +.+.||++++||.+-. ..+..+ . + ..
T Consensus 267 vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n 342 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARN 342 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccccc
Confidence 88999999999999999954 7789999999998710 000000 0 0 00
Q ss_pred CcEEEEEEcCCCCcEEEEEcC---------CCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcE
Q 014934 334 AAVKAIAWSPHLHGLLASGGG---------TADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (415)
Q Consensus 334 ~~V~~l~~sp~~~~llasggg---------~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I 403 (415)
...-.++|.... .+++++.+ -.+..+++|++.+|..++... +...+..+.++|-+..++-+.| -||..
T Consensus 343 ~e~~~l~~~~~~-lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag-~dgst 420 (1113)
T KOG0644|consen 343 HEFEQLAWRSNL-LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG-YDGST 420 (1113)
T ss_pred chhhHhhhhccc-eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhcc-CCCce
Confidence 011122332221 12222221 146678999999998877665 5677899999999888877644 68999
Q ss_pred EEEECCCCcc
Q 014934 404 IVWRYPTMSK 413 (415)
Q Consensus 404 ~vw~~~s~~~ 413 (415)
.|||+-.+.+
T Consensus 421 ~iwdi~eg~p 430 (1113)
T KOG0644|consen 421 IIWDIWEGIP 430 (1113)
T ss_pred EeeecccCCc
Confidence 9999876543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.2e-14 Score=129.78 Aligned_cols=191 Identities=16% Similarity=0.164 Sum_probs=138.2
Q ss_pred eEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecC
Q 014934 171 NLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG 248 (415)
Q Consensus 171 ~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~ 248 (415)
-+++++. +..|+++ .||++++|+..+....... ..|...|.++.|+|||++|++-+.| ..+||+..++-.+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 4788888 5788877 6899999996655443322 3788999999999999999999999 899999999966655542
Q ss_pred --CCccEEEEEee--C---C--EEEEEeCCCcEEEEECCCCCc----cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcE
Q 014934 249 --HRLRVGALAWS--S---S--LLSSGSRDKSILQRDIRAQED----FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRL 315 (415)
Q Consensus 249 --h~~~V~~l~~~--~---~--~l~sgs~dg~I~iwd~~~~~~----~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I 315 (415)
-......+.|. + . +++.-..-+.|..||+..... ...+...-...|.+++.+++|+++|.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 22334445554 2 1 222333445666666543221 111222223469999999999999999999999
Q ss_pred EEEECCCCceeEEec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 316 FVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
.|++..+.+.++-.. .|...|+.+.|+|+.+++..+. .|..+.+..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svS---s~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVS---SDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccc---cCCceeEEEEe
Confidence 999999888776554 6999999999999988666544 46777766554
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.6e-14 Score=123.41 Aligned_cols=155 Identities=25% Similarity=0.386 Sum_probs=122.5
Q ss_pred CCCeEEEEEcC-CCC--eEEEEECCCcEEEEECCCCeee----------EEecCCCccEEEEEeeC--CEEEEEeCCCcE
Q 014934 208 DDSVCSVGWAN-RNT--HLAVGTSHGKVQIWDASRCKRV----------RTMEGHRLRVGALAWSS--SLLSSGSRDKSI 272 (415)
Q Consensus 208 ~~~V~~v~~sp-~g~--~la~g~~dg~V~iwd~~~~~~~----------~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I 272 (415)
.+.+.|..|.. +++ +|++|..+|.|.+||+.++..+ .....|..+|.++.+.+ +.=++|+.+..+
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl 229 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL 229 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence 46788887654 333 6778889999999999987333 33346899999999973 444677777888
Q ss_pred EEEECCCCCccE---EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEE
Q 014934 273 LQRDIRAQEDFV---SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 349 (415)
Q Consensus 273 ~iwd~~~~~~~~---~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 349 (415)
..|.+....... ....-..-.|..+.+-||++.||++|.|++|+||+.++..++..++-|.+.|.+++|+|+.. ++
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-lm 308 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-LM 308 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-hh
Confidence 888876542111 11122234688899999999999999999999999999999999999999999999999965 88
Q ss_pred EEEcCCCCCeEEEEEC
Q 014934 350 ASGGGTADRCIRFWNT 365 (415)
Q Consensus 350 asggg~~d~~I~iwd~ 365 (415)
|+++ .|..|.+|++
T Consensus 309 Aaas--kD~rISLWkL 322 (323)
T KOG0322|consen 309 AAAS--KDARISLWKL 322 (323)
T ss_pred hhcc--CCceEEeeec
Confidence 8887 9999999986
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-12 Score=133.95 Aligned_cols=257 Identities=18% Similarity=0.190 Sum_probs=174.1
Q ss_pred CCceeccCCCCCCCcceeEeecCC--CcEEEEE-cCCeEEEEECCCCC-----eEEeEec-CCCCCeEEEEEcCCCCeEE
Q 014934 154 SPYKILDAPALQDDFYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSK-----VTKLCDL-GIDDSVCSVGWANRNTHLA 224 (415)
Q Consensus 154 ~p~~~ld~~~l~~~~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~-----~~~~~~~-~~~~~V~~v~~sp~g~~la 224 (415)
.|..++=|+-....-.++.++-++ +.++++| .||+|++|+...-. ....+.. .....+.++...+.|+.+|
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 344455554444445566777776 3677776 57999999986421 1122222 2467899999999999999
Q ss_pred EEECCCcEEEEECCCC-------eeeEEecCC-CccEE-EEEee---C-CEEEEEeCCCcEEEEECCCCCccE-EEeccc
Q 014934 225 VGTSHGKVQIWDASRC-------KRVRTMEGH-RLRVG-ALAWS---S-SLLSSGSRDKSILQRDIRAQEDFV-SKLSGH 290 (415)
Q Consensus 225 ~g~~dg~V~iwd~~~~-------~~~~~l~~h-~~~V~-~l~~~---~-~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~h 290 (415)
+|+.||.|++.++... .+.+....+ .+.+. .-++. . ..|+.+...+.|..||++...... .+....
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 9999999999998652 122222222 23333 33343 2 378888999999999999875321 122233
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCcEEEEEEcCCCC--cEEEEEcCCCCCeEEEEECCC
Q 014934 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLH--GLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 291 ~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~--~llasggg~~d~~I~iwd~~t 367 (415)
.+.|++++.+|.+++++.|...|.+.+||++=+.++..+. ++...+..+..+|-.+ ...++++-+..+.|.+|++.+
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence 4679999999999999999999999999999888887664 4567888888887654 455555433678899999999
Q ss_pred CcEEEEeeCCCC------------------E--EEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 368 NTHLSCMDTGSQ------------------V--CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 368 ~~~~~~~~~~~~------------------V--~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
|.+...+-.... + ....+..-+..+++ |++|..|+.||...-+
T Consensus 1275 g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt--ggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1275 GLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT--GGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred CcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee--cCCccceeeccCCCcc
Confidence 976655532211 1 11222223344555 7789999999987643
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-12 Score=127.54 Aligned_cols=216 Identities=13% Similarity=0.046 Sum_probs=139.7
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC---CcEEEEECCCCeeeEEecCCCccEEEEEeeC--C
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASRCKRVRTMEGHRLRVGALAWSS--S 261 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d---g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~ 261 (415)
..|+++|........+. .+...+.+.+|+|||+.|+..+.. ..|.+||+.+++... +....+.+.+.+|++ +
T Consensus 176 ~~L~~~D~dG~~~~~l~--~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADGQNAQSAL--SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCCCCceEec--cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 46888887554444443 456789999999999999887653 359999998876543 333345566888984 4
Q ss_pred EE-EEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-CCcEEEE--ECCCCceeEEeccCCCcEE
Q 014934 262 LL-SSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-DNRLFVW--NQHSTQPVLKYCEHTAAVK 337 (415)
Q Consensus 262 ~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-dg~I~iw--d~~~~~~~~~~~~h~~~V~ 337 (415)
.| ++.+.+|...+|.+.........+..+...+....|+|||+.|+..++ ++...|| ++.+++. ..+..+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcC
Confidence 55 466778876666543222224555556556677899999999887654 3554555 5555543 22222233345
Q ss_pred EEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCC--cEEEEEC
Q 014934 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN--QIIVWRY 408 (415)
Q Consensus 338 ~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg--~I~vw~~ 408 (415)
..+|+|+|++++.++....+..|.+||+.+++... +..........|+|+|+.|+.+. ...| .+.+.+.
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~-~~~g~~~l~~~~~ 402 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYAT-QQGGRSVLAAVSS 402 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEE-ecCCCEEEEEEEC
Confidence 68999999977666531112379999999887543 33333456789999999998863 2333 3555454
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-12 Score=115.05 Aligned_cols=157 Identities=18% Similarity=0.322 Sum_probs=111.0
Q ss_pred EEEEEcCCCCeEEEEEC----------CCcEEEEECCC-CeeeEEecC-CCccEEEEEeeC--CEEE--EEeCCCcEEEE
Q 014934 212 CSVGWANRNTHLAVGTS----------HGKVQIWDASR-CKRVRTMEG-HRLRVGALAWSS--SLLS--SGSRDKSILQR 275 (415)
Q Consensus 212 ~~v~~sp~g~~la~g~~----------dg~V~iwd~~~-~~~~~~l~~-h~~~V~~l~~~~--~~l~--sgs~dg~I~iw 275 (415)
..+.|+++|++|++-.. -|...||.++. ...+..+.- ..++|.+++|+| +.|+ .|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 56789999987776543 13456666532 233444432 345799999994 4543 35567899999
Q ss_pred ECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC---CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEE
Q 014934 276 DIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND---NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 276 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 352 (415)
|++. . .+..+ +...+..+.|+|+|++||+|+.+ |.|.+||.++.+.+.+++ |. .+..++|+|+|++++++.
T Consensus 89 d~~~-~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 89 DVKG-K-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATAT 162 (194)
T ss_pred cCcc-c-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEE
Confidence 9972 2 34444 35678899999999999998754 569999999888887763 33 478999999999777665
Q ss_pred cC---CCCCeEEEEECCCCcEEEEee
Q 014934 353 GG---TADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 353 gg---~~d~~I~iwd~~t~~~~~~~~ 375 (415)
.- ..|..++||+.. |+.+....
T Consensus 163 t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred eccceeccccEEEEEec-CeEeEecc
Confidence 30 138899999984 77666543
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.3e-12 Score=113.36 Aligned_cols=173 Identities=14% Similarity=0.238 Sum_probs=130.2
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC-CCeeeEEecCC--CccEEEEEee-C-C
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS-RCKRVRTMEGH--RLRVGALAWS-S-S 261 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~-~~~~~~~l~~h--~~~V~~l~~~-~-~ 261 (415)
++|.|||-...+.+..+ ....+|.+|.+.++ +|++.. .+.|.||... +.+.++.+..- ...+.+++-. . .
T Consensus 75 NkviIWDD~k~~~i~el--~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIEL--SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEecccCcEEEEE--EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 36999995555555444 45689999999755 566654 4589999987 45556555432 2334444443 2 3
Q ss_pred EEEE-EeCCCcEEEEECCCCCc-cEEEeccccCCeEEEEEeCCCCEEEEEeCCCc-EEEEECCCCceeEEecc--CCCcE
Q 014934 262 LLSS-GSRDKSILQRDIRAQED-FVSKLSGHKSEVCGLKWSYDNRELASGGNDNR-LFVWNQHSTQPVLKYCE--HTAAV 336 (415)
Q Consensus 262 ~l~s-gs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~-I~iwd~~~~~~~~~~~~--h~~~V 336 (415)
+|+. |-.-|.|.+-|+..... ....+.+|...|.|++.+-+|.++||++..|+ |+|||..+++.++++.. ..+.|
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 4443 45669999999987653 24678899999999999999999999999997 89999999999999863 45679
Q ss_pred EEEEEcCCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~~I~iwd~~t 367 (415)
.+++|+|+.. +||.++ ..|+|+||.++.
T Consensus 230 y~iaFSp~~s-~LavsS--dKgTlHiF~l~~ 257 (346)
T KOG2111|consen 230 YCIAFSPNSS-WLAVSS--DKGTLHIFSLRD 257 (346)
T ss_pred EEEEeCCCcc-EEEEEc--CCCeEEEEEeec
Confidence 9999999998 555555 799999998865
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-12 Score=119.10 Aligned_cols=183 Identities=22% Similarity=0.348 Sum_probs=138.7
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec-CCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCc-
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQED- 282 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~- 282 (415)
+..+..++|++.-..+|++..|-.|++||-.. ++...++ ..+..|+|++|.| ..|+.|++.| |.+|.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 35688899999878899999999999999776 5555554 2456799999984 6888888777 89997653221
Q ss_pred ------------cEEEeccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEE
Q 014934 283 ------------FVSKLSGHKSEVCGLKWSYDNRELASGGN-DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 349 (415)
Q Consensus 283 ------------~~~~~~~h~~~V~~l~~spdg~~lasg~~-dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 349 (415)
.+....+| ..|++|+|++||..|++++- |..|.|||..++..+.-....-+.+.-+.|+|++.+++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 11222344 67999999999999999874 56899999998866544434557788999999999888
Q ss_pred EEEcCCCCCeEEEEECC-CCcEEEEeeCCCCEEEEEECCCCCeEEEEE
Q 014934 350 ASGGGTADRCIRFWNTT-TNTHLSCMDTGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 350 asggg~~d~~I~iwd~~-t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 396 (415)
++. -|+..++|+.. +-....-+-....|...+|+|+|++|+.+.
T Consensus 255 aAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 255 AAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred Eec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE
Confidence 866 69999999654 333333333445899999999999988753
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.9e-12 Score=125.17 Aligned_cols=212 Identities=13% Similarity=0.117 Sum_probs=141.7
Q ss_pred ceeEeecCC-CcEEEEEc----CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCC--cEEEEECCCC
Q 014934 169 YLNLVDWSS-HNVLAVGL----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHG--KVQIWDASRC 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~----d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg--~V~iwd~~~~ 240 (415)
.+....||| ++.|+... +..|++|++.+++...+..+ .+.+..+.|+|||+.|+.. ..+| .|.+||+.++
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg 277 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 277 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 467889999 66776542 34799999999887665532 3445678999999988865 3455 4888999887
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEeC-CCc--EEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC---
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGSR-DKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND--- 312 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs~-dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d--- 312 (415)
+... +..+...+....|+ ++.|+..+. ++. |+++|+..+. ...+..+........|+|||++|+..+.+
T Consensus 278 ~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~ 354 (429)
T PRK03629 278 QIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ 354 (429)
T ss_pred CEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEEccCCC
Confidence 6544 44445567888998 456665554 444 5555666554 33444344456678999999999886543
Q ss_pred CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCC
Q 014934 313 NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKN 388 (415)
Q Consensus 313 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~ 388 (415)
..|++||+.+++.. .+... .......|+|+|+.++.++.......+.++++. |.....+. +...+...+|+|-
T Consensus 355 ~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 355 QHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred ceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCCC
Confidence 35889999887643 34322 233567899999977776641112347788884 44445454 4567888889873
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.6e-12 Score=125.20 Aligned_cols=211 Identities=12% Similarity=0.117 Sum_probs=142.1
Q ss_pred ceeEeecCC-CcEEEEEc----CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCC--cEEEEECCCC
Q 014934 169 YLNLVDWSS-HNVLAVGL----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHG--KVQIWDASRC 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~----d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg--~V~iwd~~~~ 240 (415)
.+....|+| ++.|+... ...|++|++.+++...+.. ..+...++.|+|||+.|+.. +.+| .|.+||+.++
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~--~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g 282 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS--FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR 282 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc--CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC
Confidence 356788999 66676653 2469999999888765543 34456688999999987654 4555 5999999887
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEe-CCCc--EEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC--
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGS-RDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN-- 313 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg-- 313 (415)
+. ..+..+.......+|+ ++.|+.++ .+|. |+++|+..+. ...+..+......++|+|||++|+..+.++
T Consensus 283 ~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~ 359 (433)
T PRK04922 283 QL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS--AERLTFQGNYNARASVSPDGKKIAMVHGSGGQ 359 (433)
T ss_pred Ce-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEECCCCc
Confidence 64 4455565556678888 45666555 4554 7777776654 233322333455789999999998765443
Q ss_pred -cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECC
Q 014934 314 -RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSK 387 (415)
Q Consensus 314 -~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~ 387 (415)
.|.+||+.+++.. .+. +........|+|+|+.++.+........|.++++..+ ....+. +...+...+|+|
T Consensus 360 ~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 360 YRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred eeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEcccCCCCCCCCccCC
Confidence 6999999887654 443 3334556799999997777664222456888888544 444443 345677778876
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-11 Score=120.47 Aligned_cols=215 Identities=13% Similarity=0.121 Sum_probs=146.1
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC---CcEEEEECCCCeeeEEecCCCccEEEEEeeC--C
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASRCKRVRTMEGHRLRVGALAWSS--S 261 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d---g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~ 261 (415)
..|+++|........+. .+...+.+.+|+|||++|+.+... ..|.+||+.+++... +..+...+.+++|++ +
T Consensus 170 ~~l~~~d~~g~~~~~l~--~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGANPQTIT--RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCCCEEee--cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 36899998766655554 455678999999999999988754 479999998875443 333555667788983 4
Q ss_pred EE-EEEeCCC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC-C--cEEEEECCCCceeEEeccCCCc
Q 014934 262 LL-SSGSRDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N--RLFVWNQHSTQPVLKYCEHTAA 335 (415)
Q Consensus 262 ~l-~sgs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d-g--~I~iwd~~~~~~~~~~~~h~~~ 335 (415)
.| ++.+.++ .|++||+.++. ...+..+........|+|||+.|+..+.. + .|+++|+.+++. ..+..+...
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~ 323 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGY 323 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCC
Confidence 45 4555554 58889988765 34455555555678999999998876543 2 688899887654 344455666
Q ss_pred EEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCC--cEEEEECC
Q 014934 336 VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN--QIIVWRYP 409 (415)
Q Consensus 336 V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg--~I~vw~~~ 409 (415)
+..++|+|+++.++.+..+.....|.+||+.++... .+..........|+|+|+.|+.+.. .++ .+.+.+..
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~-~~~~~~l~~~~~~ 397 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATT-RGGRGVLGLVSTD 397 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEe-CCCcEEEEEEECC
Confidence 788899999987766653111237899999886543 3332333456789999999888532 222 45555543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=119.51 Aligned_cols=232 Identities=14% Similarity=0.231 Sum_probs=159.3
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-----ECC-----CcEEEEECC
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-----TSH-----GKVQIWDAS 238 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-----~~d-----g~V~iwd~~ 238 (415)
++..++++ ++++|.+.++.|.|++..++...... ... .+.++.|+|.|.+|.+= ..+ -.+++|+++
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~--~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCV--ELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEe--ccc-eeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 56777888 89999999999999999888733322 222 89999999999988762 112 347799887
Q ss_pred CCeeeEEec----------------------------------------CCCccEEEEEeeC----CEEEE-----EeCC
Q 014934 239 RCKRVRTME----------------------------------------GHRLRVGALAWSS----SLLSS-----GSRD 269 (415)
Q Consensus 239 ~~~~~~~l~----------------------------------------~h~~~V~~l~~~~----~~l~s-----gs~d 269 (415)
++.....+. -|...|+.+.+++ ..+++ ++.-
T Consensus 114 t~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaP 193 (566)
T KOG2315|consen 114 TGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAP 193 (566)
T ss_pred cceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCC
Confidence 632211110 1334555555552 12221 2223
Q ss_pred CcEEEEECCC--------------------------------------------------------CCccEEEeccccCC
Q 014934 270 KSILQRDIRA--------------------------------------------------------QEDFVSKLSGHKSE 293 (415)
Q Consensus 270 g~I~iwd~~~--------------------------------------------------------~~~~~~~~~~h~~~ 293 (415)
+.+++|.... +...... ..-.++
T Consensus 194 a~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~-L~k~GP 272 (566)
T KOG2315|consen 194 ASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP-LLKEGP 272 (566)
T ss_pred cEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe-cCCCCC
Confidence 3444444320 0000111 113578
Q ss_pred eEEEEEeCCCCEEEEE--eCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE
Q 014934 294 VCGLKWSYDNRELASG--GNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371 (415)
Q Consensus 294 V~~l~~spdg~~lasg--~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~ 371 (415)
|.++.|+|+++.|+++ -.--.+.|||++ +.+++.+ ..++=+++-|+|.|+.++++|=|...|.|-|||+.+.+++
T Consensus 273 Vhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 273 VHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred ceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 9999999999988774 455689999985 5566665 4566788999999998888887888999999999998888
Q ss_pred EEeeCCCCEEEEEECCCCCeEEEEEec----CCCcEEEEECC
Q 014934 372 SCMDTGSQVCNLVWSKNVNELVSTHGY----SQNQIIVWRYP 409 (415)
Q Consensus 372 ~~~~~~~~V~~l~~s~~~~~l~s~~g~----~dg~I~vw~~~ 409 (415)
..++.... +-+.|+|||+++++++.. -||.++||+|.
T Consensus 350 ~~~~a~~t-t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 350 AKFKAANT-TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cccccCCc-eEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 88764433 448999999999997543 38999999985
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-11 Score=122.50 Aligned_cols=212 Identities=10% Similarity=0.068 Sum_probs=144.8
Q ss_pred ceeEeecCC-CcEEEEEc----CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEE-EECCCc--EEEEECCCC
Q 014934 169 YLNLVDWSS-HNVLAVGL----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV-GTSHGK--VQIWDASRC 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~----d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~-g~~dg~--V~iwd~~~~ 240 (415)
.+....|+| ++.|+... +..|++||+.+++...+. .+.+.+.+..|+|||+.|+. .+.+|. |.+||+.++
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~ 280 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG--NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG 280 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee--cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC
Confidence 467889999 66666653 358999999998876554 34567788999999998764 445555 777788876
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEe-CCC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC---
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGS-RDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND--- 312 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d--- 312 (415)
+. ..+..+........|+ ++.|+..+ .+| .|+++|+..+. ...+..+...+....|+|||+.|+....+
T Consensus 281 ~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~--~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~ 357 (435)
T PRK05137 281 TT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN--PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQ 357 (435)
T ss_pred ce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC--eEEeecCCCcccCeEECCCCCEEEEEEcCCCc
Confidence 54 4465566667778888 45666555 343 58888887654 33444345567778999999999886643
Q ss_pred CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCC-CC--CeEEEEECCCCcEEEEeeCCCCEEEEEECCC
Q 014934 313 NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGT-AD--RCIRFWNTTTNTHLSCMDTGSQVCNLVWSKN 388 (415)
Q Consensus 313 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~-~d--~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~ 388 (415)
..|.+||+..+.. ..+. ....+....|+|+|+.++.+.... .. ..|.++|+..+.. ..+.....+...+|+|-
T Consensus 358 ~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 358 FSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPGDASDPAWSPL 433 (435)
T ss_pred eEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCCCccCcccCCC
Confidence 3688999865543 3332 233567889999999777665310 11 3688889876654 44444555777888764
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-11 Score=123.38 Aligned_cols=211 Identities=15% Similarity=0.140 Sum_probs=138.8
Q ss_pred eeEeecCC-CcEEEEEcC----CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEE-EECCCcEEEEEC--CCCe
Q 014934 170 LNLVDWSS-HNVLAVGLG----NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV-GTSHGKVQIWDA--SRCK 241 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d----~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~-g~~dg~V~iwd~--~~~~ 241 (415)
+...+|+| ++.|++... ..|++||+.+++...+.. ..+.+.+..|+|||+.|+. .+.+|...||.+ ..+
T Consensus 198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~- 274 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN--FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS- 274 (427)
T ss_pred cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec--CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC-
Confidence 55778999 677776642 369999999998766543 3356678999999998875 567887777754 433
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEEe-CCCcEEEEEC--CCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC---
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSGS-RDKSILQRDI--RAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN--- 313 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~I~iwd~--~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg--- 313 (415)
....+..+........|+ ++.|+..+ .+|...+|.+ ..+. ...+..+.......+|+|||++|+..+.++
T Consensus 275 ~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~ 352 (427)
T PRK02889 275 GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA--AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAF 352 (427)
T ss_pred CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc--eEEEecCCCCcCceEECCCCCEEEEEEccCCcE
Confidence 345565566666777898 45565444 4566666654 4433 222222233345688999999999877654
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCC
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKN 388 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~ 388 (415)
.|++||+.+++.. .+..+ .......|+|+++.++.+........+.+.++ +|.....+. ....+...+|+|-
T Consensus 353 ~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 353 KLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 6999999887654 33322 34467899999998877764111234666676 455555554 3456777888874
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=119.27 Aligned_cols=183 Identities=16% Similarity=0.338 Sum_probs=148.6
Q ss_pred EEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEe------ccccC--
Q 014934 223 LAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKL------SGHKS-- 292 (415)
Q Consensus 223 la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~------~~h~~-- 292 (415)
|.+++....|.-++++.|+.+..+....+.++++..+ ..+|++|+.+|.|-.||.|.... +..+ ..|.+
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPGGD 226 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh-heeeecccccCCCcccc
Confidence 3444445578888999999998888888899999998 47889999999999999998763 2222 22333
Q ss_pred ---CeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC--CcEEEEEEcCCC-CcEEEEEcCCCCCeEEEEECC
Q 014934 293 ---EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHT--AAVKAIAWSPHL-HGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 293 ---~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~--~~V~~l~~sp~~-~~llasggg~~d~~I~iwd~~ 366 (415)
.|++++|+.+|-.+++|..+|.|.|||+++.+++..- .|. -+|..+.|.+.+ ...+++. ....++|||-.
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~S~---Dk~~~kiWd~~ 302 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQNKVVSM---DKRILKIWDEC 302 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCceEEec---chHHhhhcccc
Confidence 3999999999999999999999999999999988654 444 578899997762 3366666 47889999999
Q ss_pred CCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 367 TNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 367 t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+|+....+.....+..+++-|++-.+++ +..+..+..|=+|++-
T Consensus 303 ~Gk~~asiEpt~~lND~C~~p~sGm~f~--Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 303 TGKPMASIEPTSDLNDFCFVPGSGMFFT--ANESSKMHTYYIPSLG 346 (703)
T ss_pred cCCceeeccccCCcCceeeecCCceEEE--ecCCCcceeEEccccC
Confidence 9999999988888999999999988888 6678888888887764
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-11 Score=117.92 Aligned_cols=185 Identities=15% Similarity=0.260 Sum_probs=153.2
Q ss_pred CcEEEEE-cCCeEEEEECCCCCeEEeEec--CCCCCeEEEEEc------C--------------CCCeEEEEECCCcEEE
Q 014934 178 HNVLAVG-LGNCVYLWNACSSKVTKLCDL--GIDDSVCSVGWA------N--------------RNTHLAVGTSHGKVQI 234 (415)
Q Consensus 178 ~~~la~~-~d~~V~iwd~~~~~~~~~~~~--~~~~~V~~v~~s------p--------------~g~~la~g~~dg~V~i 234 (415)
..++|.. .||.++||+...+++...+.. .-.+..++..|. | +-..++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 4456665 689999999999887666543 124455555552 1 2346888999999999
Q ss_pred EECCCCeeeEEec--CCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe
Q 014934 235 WDASRCKRVRTME--GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG 310 (415)
Q Consensus 235 wd~~~~~~~~~l~--~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~ 310 (415)
|++..++....+. .|.+.|.++.|+. ..|.+++.|+.+..|+..... ....+.+....+.+++.+|||..|++++
T Consensus 85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLVSSLCISPDGKILLTAS 163 (541)
T ss_pred EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-eeeeeccCCCccceEEEcCCCCEEEecc
Confidence 9999998887776 6999999999984 689999999999999998876 5778888888999999999999999986
Q ss_pred CCCcEEEEECCCCceeEEeccCCCcEEEEEEcCC-----CCcEEEEEcCCCCCeEEEEECCC
Q 014934 311 NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPH-----LHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 311 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~-----~~~llasggg~~d~~I~iwd~~t 367 (415)
++|++||+++++.+..|.+|.+.|.++.|--. |.++|.+.. .+..|.+|-+..
T Consensus 164 --~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~--~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA--AERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc--cccceeEEEEEc
Confidence 58999999999999999999999999999877 777888876 678888887654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.2e-11 Score=117.75 Aligned_cols=215 Identities=13% Similarity=0.113 Sum_probs=143.7
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC---CcEEEEECCCCeeeEEecCCCccEEEEEee--CCE
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSL 262 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d---g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~ 262 (415)
.|+++|...+....+. .+...+.+..|+|||++|+..+.+ ..|.+||+.+++... +....+.+....|+ ++.
T Consensus 180 ~l~~~d~~g~~~~~l~--~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAVTLL--QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCceEEe--cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence 4888888776655544 456788999999999999877644 358899998876433 33334445568888 355
Q ss_pred EE-EEeCCC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-C--CcEEEEECCCCceeEEeccCCCcE
Q 014934 263 LS-SGSRDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-D--NRLFVWNQHSTQPVLKYCEHTAAV 336 (415)
Q Consensus 263 l~-sgs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-d--g~I~iwd~~~~~~~~~~~~h~~~V 336 (415)
|+ +.+.+| .|+++|+.++. ...+..+........|+|||+.|+..+. + ..|+++|+.+++.. .+.......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~ 333 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYN 333 (430)
T ss_pred EEEEEccCCCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence 54 555555 58888998765 3445556666777899999998876654 2 36888898877643 222222333
Q ss_pred EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCC--CcEEEEECCC
Q 014934 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ--NQIIVWRYPT 410 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~d--g~I~vw~~~s 410 (415)
....|+|+++.++.+........|.+||+.+++... +..........|+|+|+.++.+.. .+ ..|.+++...
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~-~~g~~~l~~~~~~g 407 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATR-QQGRGVLMLVSING 407 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEe-cCCceEEEEEECCC
Confidence 457899999977776641112358899999887533 322223335689999999987532 33 3567777654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.3e-11 Score=117.98 Aligned_cols=215 Identities=15% Similarity=0.137 Sum_probs=140.7
Q ss_pred EeecCC-Cc---EEEEEc-C--CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC-CC----cEEEEECCC
Q 014934 172 LVDWSS-HN---VLAVGL-G--NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HG----KVQIWDASR 239 (415)
Q Consensus 172 ~l~ws~-~~---~la~~~-d--~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~-dg----~V~iwd~~~ 239 (415)
.-.|+| +. ++.++. + ..|++.++.+++..++..+ .+.....+|+|||+.||.... +| .+.+|++..
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~--~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL--QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--CCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence 457999 43 222442 2 4799999999887766643 345667899999998887653 23 345577664
Q ss_pred C---eeeEEecCCCccEEEEEee--CCEEEEEe-CCCc--EEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 240 C---KRVRTMEGHRLRVGALAWS--SSLLSSGS-RDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 240 ~---~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
+ +.......+.......+|+ ++.|+..+ .+|. |+++++.........+..+...+....|+|||+.|+..+.
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEc
Confidence 2 3333333333344667888 45555444 5665 4444554322223445455567788999999999987654
Q ss_pred C---CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCC
Q 014934 312 D---NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKN 388 (415)
Q Consensus 312 d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~ 388 (415)
+ ..|++||+.+++.. .+......+....|+|+|+.++.+........|.+||+.+++..........+...+|+|.
T Consensus 347 ~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 347 IKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred CCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence 3 46999999888654 3433344567899999999887766422356799999998876655555566777888875
Q ss_pred C
Q 014934 389 V 389 (415)
Q Consensus 389 ~ 389 (415)
.
T Consensus 426 ~ 426 (428)
T PRK01029 426 P 426 (428)
T ss_pred C
Confidence 4
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=118.69 Aligned_cols=218 Identities=17% Similarity=0.225 Sum_probs=165.6
Q ss_pred eecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCCcEEEEECCCCeeeEEecCCC
Q 014934 173 VDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRCKRVRTMEGHR 250 (415)
Q Consensus 173 l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg~V~iwd~~~~~~~~~l~~h~ 250 (415)
..||| ++++|+..+-.+.|-|..+-++.+++.. -+.|.-+.|..|..+++.+ ..++.|++|++...+-...+....
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 46888 9999999999999999988887776643 3678889999988766554 678899999999988888888888
Q ss_pred ccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCc---EEEEECCCCc
Q 014934 251 LRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR---LFVWNQHSTQ 324 (415)
Q Consensus 251 ~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~---I~iwd~~~~~ 324 (415)
..+..+.|+| ++|.+...|-.|.+|.+.+... ..+.-.+..+.+++|+|||++.|.++.-.. +.|..-....
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~--~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG--YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEecccee--EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 9999999994 6788889999999999988763 333334556799999999999988775322 2222222334
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEE
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQII 404 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~ 404 (415)
.+..+...+-..+.+.|+|+|..+. +||..-.-.+..++.+-.+..+.|+|.+++|++ |+.|+.++
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~la------------Vwd~~Leykv~aYe~~lG~k~v~wsP~~qflav--GsyD~~lr 235 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLA------------VWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAV--GSYDQMLR 235 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEE------------EecchhhheeeeeeeccceeEEEeccccceEEe--eccchhhh
Confidence 5556666677788999999986333 444333333334455677888999999999999 88999988
Q ss_pred EEEC
Q 014934 405 VWRY 408 (415)
Q Consensus 405 vw~~ 408 (415)
|-+-
T Consensus 236 vlnh 239 (447)
T KOG4497|consen 236 VLNH 239 (447)
T ss_pred hhce
Confidence 7654
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.5e-11 Score=110.93 Aligned_cols=232 Identities=9% Similarity=0.117 Sum_probs=163.5
Q ss_pred eeEeecCC---CcEEEEE-cCCeEEEEECCCCCeEEeE-----ecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC
Q 014934 170 LNLVDWSS---HNVLAVG-LGNCVYLWNACSSKVTKLC-----DLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 170 i~~l~ws~---~~~la~~-~d~~V~iwd~~~~~~~~~~-----~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~ 240 (415)
+..+.|.. .+++... .+..+.........+.... .......|..++.. ...|++|..+|.+++|..+.+
T Consensus 58 is~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~ 135 (412)
T KOG3881|consen 58 ISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSG 135 (412)
T ss_pred hhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEeccCC
Confidence 44555543 2344444 4555666655554443332 01223455555443 335777899999999998743
Q ss_pred e----eeEEecCCCccEEEEEee---CCEEEEEeCC--CcEEEEECCCCCccEEEecc-------c--cCCeEEEEEeCC
Q 014934 241 K----RVRTMEGHRLRVGALAWS---SSLLSSGSRD--KSILQRDIRAQEDFVSKLSG-------H--KSEVCGLKWSYD 302 (415)
Q Consensus 241 ~----~~~~l~~h~~~V~~l~~~---~~~l~sgs~d--g~I~iwd~~~~~~~~~~~~~-------h--~~~V~~l~~spd 302 (415)
. .+..+..+ ..+..|.-. +.++++|+.. ..+.+||+....+ +..-+. - .-.++++.|-+.
T Consensus 136 d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q-iw~aKNvpnD~L~LrVPvW~tdi~Fl~g 213 (412)
T KOG3881|consen 136 DLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ-IWSAKNVPNDRLGLRVPVWITDIRFLEG 213 (412)
T ss_pred ccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeeccccee-eeeccCCCCccccceeeeeeccceecCC
Confidence 2 22233322 234444433 6789999999 8899999987742 222111 1 123677888887
Q ss_pred --CCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE-ee-CC
Q 014934 303 --NRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC-MD-TG 377 (415)
Q Consensus 303 --g~~lasg~~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~-~~-~~ 377 (415)
...||+++.-+.|++||.+.+ +|+.+|.--..++.++...|.++.++ +|. .-+.+..||+++++.+.+ ++ ..
T Consensus 214 ~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy-~gn--~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 214 SPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY-TGN--TKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred CCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE-Eec--ccchhheecccCceeeccccCCcc
Confidence 889999999999999999866 68889888889999999999998544 444 789999999999998877 43 45
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+.|.++..+|.+++|++ ++-|..|+|+|+.+
T Consensus 291 Gsirsih~hp~~~~las--~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLAS--CGLDRYVRIHDIKT 321 (412)
T ss_pred CCcceEEEcCCCceEEe--eccceeEEEeeccc
Confidence 78999999999999999 67899999999998
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-10 Score=113.80 Aligned_cols=213 Identities=13% Similarity=0.077 Sum_probs=139.5
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC-C--cEEEEECCCCeeeEEecCCCccEEEEEee--CCE
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-G--KVQIWDASRCKRVRTMEGHRLRVGALAWS--SSL 262 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d-g--~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~ 262 (415)
.|+++|........+. .....+.+..|+|||++|+..+.+ + .|.+||+.+++... +....+.....+|+ ++.
T Consensus 199 ~l~i~d~dG~~~~~l~--~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNEQMLL--RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCceEee--cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE
Confidence 6888887766554443 446788999999999999887543 3 58888988776432 22223334467888 354
Q ss_pred E-EEEeCCCc--EEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-C--CcEEEEECCCCceeEEeccCCCcE
Q 014934 263 L-SSGSRDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-D--NRLFVWNQHSTQPVLKYCEHTAAV 336 (415)
Q Consensus 263 l-~sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-d--g~I~iwd~~~~~~~~~~~~h~~~V 336 (415)
| ++.+.+|. |+++|+.++. ...+..+.......+|+|||+.|+..+. + ..|+++|+.+++... +..+....
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~ 352 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQN 352 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCC
Confidence 4 45666775 7788887765 4455555566778899999998877553 2 358888888776432 32222233
Q ss_pred EEEEEcCCCCcEEEEEcCCCCC--eEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCC--cEEEEECCC
Q 014934 337 KAIAWSPHLHGLLASGGGTADR--CIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN--QIIVWRYPT 410 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~--~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg--~I~vw~~~s 410 (415)
...+|+|+|+.++.+.. .++ .|.++|+.+++... +..........|+|+|+.|+.+. ..++ .|.+++...
T Consensus 353 ~~~~~SpDG~~l~~~~~--~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~-~~~g~~~l~~~~~~G 426 (448)
T PRK04792 353 LGGSITPDGRSMIMVNR--TNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYST-TYQGKQVLAAVSIDG 426 (448)
T ss_pred cCeeECCCCCEEEEEEe--cCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEE-ecCCceEEEEEECCC
Confidence 45799999997777654 333 56678888886533 32222223458999999988753 3344 467777643
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-12 Score=122.22 Aligned_cols=238 Identities=21% Similarity=0.274 Sum_probs=174.7
Q ss_pred cceeEeecCC-CcEEEEEcC-CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCC--CCeEEEEECCCcEEEEECCCCee-
Q 014934 168 FYLNLVDWSS-HNVLAVGLG-NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR--NTHLAVGTSHGKVQIWDASRCKR- 242 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~~d-~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~--g~~la~g~~dg~V~iwd~~~~~~- 242 (415)
-+++.|.|+. +.+|+.|+| ..|.+||...++....+..+|...|.--.|.|. ..-+++++.||.|++=.+...+.
T Consensus 143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~ 222 (559)
T KOG1334|consen 143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV 222 (559)
T ss_pred CccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence 4689999998 889999865 689999999999888887799889988889884 46789999999999887643332
Q ss_pred --eEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCcc--EEEecc--------------------------
Q 014934 243 --VRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDF--VSKLSG-------------------------- 289 (415)
Q Consensus 243 --~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~-------------------------- 289 (415)
...+..|.++|..++.. +..|.+++.|+.+.-+|++..... ...-..
T Consensus 223 e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~ 302 (559)
T KOG1334|consen 223 ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGS 302 (559)
T ss_pred ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCCh
Confidence 23455789999988876 688999999999999998864310 000000
Q ss_pred --------------------------------ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC--C----------ce
Q 014934 290 --------------------------------HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS--T----------QP 325 (415)
Q Consensus 290 --------------------------------h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~--~----------~~ 325 (415)
....|+|++++.++.-|++.-+|-.|+++.-.- + ..
T Consensus 303 dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~ 382 (559)
T KOG1334|consen 303 DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQY 382 (559)
T ss_pred hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhc
Confidence 112367777776666666666677777774321 1 11
Q ss_pred eEE-eccCCC--cEEEEEEc-CCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC-CCEEEEEECCCCCeEEEEEecCC
Q 014934 326 VLK-YCEHTA--AVKAIAWS-PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 326 ~~~-~~~h~~--~V~~l~~s-p~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
+.. +++|.. .|+.+-|- |.. .++++|+ .-|.|.||+-.+++.+..+... .-|.||.-+|.-..|++ .+-|
T Consensus 383 ~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGS--DCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs--SGid 457 (559)
T KOG1334|consen 383 VKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGS--DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS--SGID 457 (559)
T ss_pred cchhhcccccccccceeeeccCcc-ceEEecC--ccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc--cCCc
Confidence 222 567753 46777654 443 4777776 8899999999999998877633 36888999999999988 5688
Q ss_pred CcEEEEECCC
Q 014934 401 NQIIVWRYPT 410 (415)
Q Consensus 401 g~I~vw~~~s 410 (415)
..|+||---+
T Consensus 458 ~DVKIWTP~~ 467 (559)
T KOG1334|consen 458 HDVKIWTPLT 467 (559)
T ss_pred cceeeecCCc
Confidence 9999998644
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-11 Score=108.60 Aligned_cols=222 Identities=18% Similarity=0.203 Sum_probs=158.6
Q ss_pred cCCeEEEEECCCCCeEEeEe-cC-C---CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe--eeEEecCCCccEEEEE
Q 014934 185 LGNCVYLWNACSSKVTKLCD-LG-I---DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--RVRTMEGHRLRVGALA 257 (415)
Q Consensus 185 ~d~~V~iwd~~~~~~~~~~~-~~-~---~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~ 257 (415)
..|.|.++.....+....+. +. . .....++.|++.|..++++..+|.+.+-+..... .++..+.|...++...
T Consensus 93 a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~ 172 (339)
T KOG0280|consen 93 ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAK 172 (339)
T ss_pred ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeee
Confidence 56788888765433222221 10 0 1135678899999999999999999976655443 3447889999999999
Q ss_pred ee---CCEEEEEeCCCcEEEEECCCCCccEE-EeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCC-CceeEEecc
Q 014934 258 WS---SSLLSSGSRDKSILQRDIRAQEDFVS-KLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHS-TQPVLKYCE 331 (415)
Q Consensus 258 ~~---~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~-~~~~~~~~~ 331 (415)
|+ |+++.+|+.|+.+..||+|.+...+. ..+.|...|++|.-+| .+.++++|+.|-.|++||.++ ++++..- .
T Consensus 173 f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~ 251 (339)
T KOG0280|consen 173 FSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-K 251 (339)
T ss_pred cccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-c
Confidence 87 79999999999999999996554443 3567899999999886 688999999999999999994 5777654 4
Q ss_pred CCCcEEEEEEcCCCCc-EEEEEcCCCCCeEEEEECCCCcEE-----EEe-eCCCCEEEEEECCCCCeEEEEEecCCCcEE
Q 014934 332 HTAAVKAIAWSPHLHG-LLASGGGTADRCIRFWNTTTNTHL-----SCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQII 404 (415)
Q Consensus 332 h~~~V~~l~~sp~~~~-llasggg~~d~~I~iwd~~t~~~~-----~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~ 404 (415)
-.+.|+.+.++|.-.. +|+++ .-+-.+|-+...+... ... .+.+-...-.|.....+|++++ +-|+.|+
T Consensus 252 v~GGVWRi~~~p~~~~~lL~~C---Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs-FYDk~~~ 327 (339)
T KOG0280|consen 252 VGGGVWRIKHHPEIFHRLLAAC---MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS-FYDKKIR 327 (339)
T ss_pred cccceEEEEecchhhhHHHHHH---HhcCceEEEecccccchheeeeccccccceeeccccccccceeeeee-cccccee
Confidence 4589999999997543 45554 4555777777654322 111 1456677788866666777764 4567755
Q ss_pred -EEECCCC
Q 014934 405 -VWRYPTM 411 (415)
Q Consensus 405 -vw~~~s~ 411 (415)
+|-.-+.
T Consensus 328 ~~Wl~~t~ 335 (339)
T KOG0280|consen 328 QLWLHITG 335 (339)
T ss_pred eeeeeccC
Confidence 8865444
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-10 Score=112.74 Aligned_cols=222 Identities=14% Similarity=0.096 Sum_probs=139.9
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEE---EEECCC--cEEEEECCCCeeeEEecCCCccEEEEEee--C
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA---VGTSHG--KVQIWDASRCKRVRTMEGHRLRVGALAWS--S 260 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la---~g~~dg--~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~ 260 (415)
.|++.|...+....+.. ....+.+-.|+|||+.++ +...+| .|.+.++..++... +....+.....+|+ +
T Consensus 166 ~l~~~d~dG~~~~~lt~--~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQ--EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK 242 (428)
T ss_pred eEEEEcCCCCCceEccc--CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence 68888888777666553 345667889999997533 334444 47777887665333 22234445567888 4
Q ss_pred CEEEEEe-CCC----cEEEEECCCC--CccEEEeccccCCeEEEEEeCCCCEEEEEe-CCCc--EEEEECCC-CceeEEe
Q 014934 261 SLLSSGS-RDK----SILQRDIRAQ--EDFVSKLSGHKSEVCGLKWSYDNRELASGG-NDNR--LFVWNQHS-TQPVLKY 329 (415)
Q Consensus 261 ~~l~sgs-~dg----~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~spdg~~lasg~-~dg~--I~iwd~~~-~~~~~~~ 329 (415)
+.|+..+ .+| .+.+|++..+ .........+.......+|+|||+.|+..+ .+|. |+++++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 5555443 333 3344676642 122223323333456789999999888765 4554 55555542 2334455
Q ss_pred ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEe-cCCCcEEEEEC
Q 014934 330 CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHG-YSQNQIIVWRY 408 (415)
Q Consensus 330 ~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g-~~dg~I~vw~~ 408 (415)
..+...+....|+|+|+.++.+........|.+||+.+++..........+....|+|||+.|+.+.. .....|.+|++
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 55556678899999999777765411235799999999887554434446778999999999886432 12457888888
Q ss_pred CCCc
Q 014934 409 PTMS 412 (415)
Q Consensus 409 ~s~~ 412 (415)
...+
T Consensus 403 ~~g~ 406 (428)
T PRK01029 403 ITKK 406 (428)
T ss_pred CCCC
Confidence 7654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-09 Score=106.16 Aligned_cols=231 Identities=14% Similarity=0.094 Sum_probs=152.1
Q ss_pred CcEEEEE--cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEE
Q 014934 178 HNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGA 255 (415)
Q Consensus 178 ~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~ 255 (415)
++++++. .++.|.+.|..+.++...+..+. ..-..+.++|||+++.+++.||.|.++|+.+.+.+.++.... ...+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 4666555 46899999999999988886432 334557899999999999999999999999999999887543 4566
Q ss_pred EEee--CCEEEEEe-CCCcEEEEECCCCCccEEEecc-------ccCCeEEEEEeCCCCEEEEEeC-CCcEEEEECCCCc
Q 014934 256 LAWS--SSLLSSGS-RDKSILQRDIRAQEDFVSKLSG-------HKSEVCGLKWSYDNRELASGGN-DNRLFVWNQHSTQ 324 (415)
Q Consensus 256 l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~-------h~~~V~~l~~spdg~~lasg~~-dg~I~iwd~~~~~ 324 (415)
++++ +++++++. ..+.+.++|.++.+ .+..+.. ....+.++..+|....++..-. -+.|.+.|....+
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred EEEcCCCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 7776 67777654 68999999999887 4554432 2346788888998886666554 4889888987765
Q ss_pred eeE-EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC---------------------------
Q 014934 325 PVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--------------------------- 376 (415)
Q Consensus 325 ~~~-~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~--------------------------- 376 (415)
.+. +............|.|++++++++.. .+..|-++|..+++.+..++.
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLG 239 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSS
T ss_pred ccceeeecccccccccccCcccceeeeccc--ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccc
Confidence 443 23244556788999999998888765 567888888887655443321
Q ss_pred ----------------------------CCCEEEEEECCCCCeEEEEE--ecCCCcEEEEECCCCcc
Q 014934 377 ----------------------------GSQVCNLVWSKNVNELVSTH--GYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 377 ----------------------------~~~V~~l~~s~~~~~l~s~~--g~~dg~I~vw~~~s~~~ 413 (415)
.+.-..+..+|+++++.+.. +...+.|.|+|..+++.
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~ 306 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV 306 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcce
Confidence 11113456688888888730 13357899999888754
|
... |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-11 Score=125.35 Aligned_cols=215 Identities=16% Similarity=0.242 Sum_probs=147.6
Q ss_pred EECCCCCeEEeEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCCC-------eeeEEecCCCccEEEEEe--eCC
Q 014934 192 WNACSSKVTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASRC-------KRVRTMEGHRLRVGALAW--SSS 261 (415)
Q Consensus 192 wd~~~~~~~~~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~~-------~~~~~l~~h~~~V~~l~~--~~~ 261 (415)
|+.+..-+..+. .|...|..++.++. +.++++|+.||+|++||...- +...++..-..++.++.. +++
T Consensus 1034 W~p~G~lVAhL~--Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNPRGILVAHLH--EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCccceEeehhh--hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 665443333333 67778888888764 599999999999999998531 222333333455666555 478
Q ss_pred EEEEEeCCCcEEEEECCCCC--c----cEEEecccc-CC-eEEEEEeC-CCC-EEEEEeCCCcEEEEECCCCceeEEec-
Q 014934 262 LLSSGSRDKSILQRDIRAQE--D----FVSKLSGHK-SE-VCGLKWSY-DNR-ELASGGNDNRLFVWNQHSTQPVLKYC- 330 (415)
Q Consensus 262 ~l~sgs~dg~I~iwd~~~~~--~----~~~~~~~h~-~~-V~~l~~sp-dg~-~lasg~~dg~I~iwd~~~~~~~~~~~- 330 (415)
.+++++.||.|.+.++.... . .......+. +. |..-++.. ++. .|+.+...+.|..||++....+.+++
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 99999999999999987632 1 111111221 22 23233332 333 67888888999999999876655543
Q ss_pred -cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC--CCEEEEEECCCC---CeEEEEEec-CCCcE
Q 014934 331 -EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--SQVCNLVWSKNV---NELVSTHGY-SQNQI 403 (415)
Q Consensus 331 -~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~--~~V~~l~~s~~~---~~l~s~~g~-~dg~I 403 (415)
...+.|++++.+|.+.++ +.| +..|.+.+||++-+.++....+. .++..+..++-. ...+++ |. ..|.|
T Consensus 1192 ~~~hG~vTSi~idp~~~Wl-viG--ts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~-~~~~~nev 1267 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWL-VIG--TSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSA-GSSSNNEV 1267 (1431)
T ss_pred CccccceeEEEecCCceEE-EEe--cCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEe-cccCCCce
Confidence 455789999999999844 444 48999999999999998888754 567777666643 455554 44 78899
Q ss_pred EEEECCCCc
Q 014934 404 IVWRYPTMS 412 (415)
Q Consensus 404 ~vw~~~s~~ 412 (415)
.+|++.++.
T Consensus 1268 s~wn~~~g~ 1276 (1431)
T KOG1240|consen 1268 STWNMETGL 1276 (1431)
T ss_pred eeeecccCc
Confidence 999998764
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-11 Score=123.95 Aligned_cols=192 Identities=21% Similarity=0.293 Sum_probs=152.4
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEE-------EEEeeCCEEEEEeCCCcEEEEECCCCC
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVG-------ALAWSSSLLSSGSRDKSILQRDIRAQE 281 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~-------~l~~~~~~l~sgs~dg~I~iwd~~~~~ 281 (415)
+.|....+..+.+.++.++.+..+-+||...+.....+. +..++. ...+.+-++++|+.-+.|.+|+....+
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 455556666678889999999999999998776665554 222221 112224589999999999999998554
Q ss_pred ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeE-EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeE
Q 014934 282 DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (415)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~-~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I 360 (415)
. ...+.+|.+.|..+.|+-||+++++.+.|..+++|++.+.+... ..-+|.+.|..++|.|. .++++| +|.+.
T Consensus 167 ~-p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~g--edctc 240 (967)
T KOG0974|consen 167 K-PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVG--EDCTC 240 (967)
T ss_pred C-cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEec--cceEE
Confidence 3 33688999999999999999999999999999999999987665 44589999999999998 666776 89999
Q ss_pred EEEECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 361 RFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 361 ~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
++|+.. ++.+..++ .+..+..++..++...+++ +..|+.+++|++..
T Consensus 241 rvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT--~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 241 RVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVT--GGNDSTLKLWDLNG 289 (967)
T ss_pred EEEecc-cceehhhhhhhhcceeEEEEcCCceEEEe--eccCcchhhhhhhc
Confidence 999654 55555554 3567999999999888888 78999999999864
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-11 Score=117.01 Aligned_cols=183 Identities=21% Similarity=0.337 Sum_probs=146.2
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec------CCCc
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME------GHRL 251 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~------~h~~ 251 (415)
..++.+|.+..||-+|++.|....-+.. ..+.+.+|..++...+|++|+.+|.|..||..+...+.++. .|.+
T Consensus 146 cDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg 224 (703)
T KOG2321|consen 146 CDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPG 224 (703)
T ss_pred ccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcc
Confidence 5688888899999999999998877763 35889999999999999999999999999998766655553 2333
Q ss_pred -----cEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEECCC
Q 014934 252 -----RVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 252 -----~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd--g~~lasg~~dg~I~iwd~~~ 322 (415)
.|+++.|+ |=.+++|+.+|.++|||+|+....+..-++..-+|..+.|.+. ++.+++. ....++|||-.+
T Consensus 225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~ 303 (703)
T KOG2321|consen 225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECT 303 (703)
T ss_pred ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhccccc
Confidence 49999998 4579999999999999999998666665666778999999875 3445554 346799999999
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
|++...++ ....++.+|+-|++. ++.++. .+..+..|=+.
T Consensus 304 Gk~~asiE-pt~~lND~C~~p~sG-m~f~An--e~~~m~~yyiP 343 (703)
T KOG2321|consen 304 GKPMASIE-PTSDLNDFCFVPGSG-MFFTAN--ESSKMHTYYIP 343 (703)
T ss_pred CCceeecc-ccCCcCceeeecCCc-eEEEec--CCCcceeEEcc
Confidence 99988885 455699999999876 666664 56666666554
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-09 Score=101.63 Aligned_cols=226 Identities=12% Similarity=0.081 Sum_probs=152.2
Q ss_pred CCeEEEEECCCCCeEEeEecCCC------CCeEEEEEcCCCCeEEEEE-C-CCcEEEEECCCCeeeEEecCCCccEEEEE
Q 014934 186 GNCVYLWNACSSKVTKLCDLGID------DSVCSVGWANRNTHLAVGT-S-HGKVQIWDASRCKRVRTMEGHRLRVGALA 257 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~------~~V~~v~~sp~g~~la~g~-~-dg~V~iwd~~~~~~~~~l~~h~~~V~~l~ 257 (415)
++.|.+||..+.+....+.++.. .....++++|||++|.+.. . +..|.+.|+.+++.+..+.- .....-+.
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~ 154 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFP 154 (352)
T ss_pred CCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEE
Confidence 47899999999999888875422 2344789999999999876 3 68899999999999988774 22333333
Q ss_pred eeCCEEEEEeCCCcEEEEECCCCCccE-E---EeccccCCeE-EEEEeC-CCCEEEEEeCCCcEEEEECCCC-----cee
Q 014934 258 WSSSLLSSGSRDKSILQRDIRAQEDFV-S---KLSGHKSEVC-GLKWSY-DNRELASGGNDNRLFVWNQHST-----QPV 326 (415)
Q Consensus 258 ~~~~~l~sgs~dg~I~iwd~~~~~~~~-~---~~~~h~~~V~-~l~~sp-dg~~lasg~~dg~I~iwd~~~~-----~~~ 326 (415)
.+...+..-+.||......+....+.. . .+..-...+. .-.+.+ +|+++.+... |.|++.|+... +.+
T Consensus 155 t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~ 233 (352)
T TIGR02658 155 TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAI 233 (352)
T ss_pred ecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceeccee
Confidence 334344444566666555444333211 0 1111000000 003455 8888777666 99999996443 223
Q ss_pred EEecc-------CCCcEEEEEEcCCCCcEEEEEcC-------CCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCC-e
Q 014934 327 LKYCE-------HTAAVKAIAWSPHLHGLLASGGG-------TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN-E 391 (415)
Q Consensus 327 ~~~~~-------h~~~V~~l~~sp~~~~llasggg-------~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~-~ 391 (415)
..+.. ..+...-++++|+++.+++...+ ...+.|.++|+.+++.+..+..+..+.++++++|++ .
T Consensus 234 ~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 234 EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPL 313 (352)
T ss_pred eeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeE
Confidence 22211 22344559999999988885421 012689999999999999999999999999999999 7
Q ss_pred EEEEEecCCCcEEEEECCCCccc
Q 014934 392 LVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
|+++. ..++.|.++|..+++.+
T Consensus 314 lyvtn-~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 314 LYALS-TGDKTLYIFDAETGKEL 335 (352)
T ss_pred EEEeC-CCCCcEEEEECcCCeEE
Confidence 77653 35788999999988653
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-10 Score=106.34 Aligned_cols=186 Identities=23% Similarity=0.390 Sum_probs=140.2
Q ss_pred CcEEEEEcCCeEEEEECC-CCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC----CeeeEEecCCCcc
Q 014934 178 HNVLAVGLGNCVYLWNAC-SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR----CKRVRTMEGHRLR 252 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~-~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~----~~~~~~l~~h~~~ 252 (415)
..++.++.|.+++||--. .++.-..+......+++++.+.++...|++|-..|++.-+.+.. ....+....|..+
T Consensus 37 ~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~ 116 (404)
T KOG1409|consen 37 EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQAR 116 (404)
T ss_pred CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcc
Confidence 567888889999999543 34433333223468899999999999999999999999887643 3445566678899
Q ss_pred EEEEEee--CCEEEEEeCCCcEEEEECCCC----------------------------------------CccEEEeccc
Q 014934 253 VGALAWS--SSLLSSGSRDKSILQRDIRAQ----------------------------------------EDFVSKLSGH 290 (415)
Q Consensus 253 V~~l~~~--~~~l~sgs~dg~I~iwd~~~~----------------------------------------~~~~~~~~~h 290 (415)
|..+.|+ +..+++.+.|..+.-.-.+.+ -.++..+.+|
T Consensus 117 v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h 196 (404)
T KOG1409|consen 117 VSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH 196 (404)
T ss_pred eeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc
Confidence 9988887 567777777665432211111 1245667899
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP-VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 291 ~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
...+.+++|.+....|.+|..|..+.+||+--.+- ...+.+|...|..+...+.-..+++.+ .|+.|.+||+.
T Consensus 197 ~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~---edg~i~~w~mn 270 (404)
T KOG1409|consen 197 TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG---EDGGIVVWNMN 270 (404)
T ss_pred ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc---CCCeEEEEecc
Confidence 99999999999999999999999999999865433 456678999999998888776555544 79999999986
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-10 Score=111.72 Aligned_cols=186 Identities=19% Similarity=0.269 Sum_probs=153.4
Q ss_pred CCCCeEEEEECCCcEEEEECCCCeeeEEecC---CCccEEEEEee------C----------------CEEEEEeCCCcE
Q 014934 218 NRNTHLAVGTSHGKVQIWDASRCKRVRTMEG---HRLRVGALAWS------S----------------SLLSSGSRDKSI 272 (415)
Q Consensus 218 p~g~~la~g~~dg~V~iwd~~~~~~~~~l~~---h~~~V~~l~~~------~----------------~~l~sgs~dg~I 272 (415)
|-+.++|..+.||.++|||...++....+.. -.+..++..|. + ..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887766642 24556667664 1 257888899999
Q ss_pred EEEECCCCCccEEEe--ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEE
Q 014934 273 LQRDIRAQEDFVSKL--SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLA 350 (415)
Q Consensus 273 ~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 350 (415)
.+|++..++ ...++ ..|.+.|.++.|+.+-..|.+++.|+.+..|+....+.+..+.+.+..+..++.+||+. +++
T Consensus 83 ~~ys~~~g~-it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~-~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGE-ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK-ILL 160 (541)
T ss_pred EEEEecCCe-EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC-EEE
Confidence 999999887 33333 47999999999999999999999999999999999999999999999999999999987 666
Q ss_pred EEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCC-----CCeEEEEEecCCCcEEEEECCC
Q 014934 351 SGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKN-----VNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 351 sggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~-----~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+++ +.|++||+++++.+..+. |.++|.+++|..+ |.+++++.+ .+.-|.+|....
T Consensus 161 ~as----~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~-~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS----RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA-AERGITVWVVEK 221 (541)
T ss_pred ecc----ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc-cccceeEEEEEc
Confidence 654 899999999999999886 6788999999887 788887533 455678887654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.8e-11 Score=122.68 Aligned_cols=182 Identities=20% Similarity=0.305 Sum_probs=144.6
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCe-----EEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCcc
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSV-----CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLR 252 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V-----~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~ 252 (415)
.++..+..++.+.+|+...+.+..... +...+ .-+-++++.-++++|+.-|.|.+|+....+.-..+.+|.+.
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~ 177 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS 177 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence 455555578899999988776554442 32222 22334566679999999999999998744333368899999
Q ss_pred EEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec
Q 014934 253 VGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC 330 (415)
Q Consensus 253 V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~ 330 (415)
|..+.|+ +.++++.|.|+++++|++.+.+.......+|...|..++|.|+ .+++++.|-+.++|+.. +..+..+.
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~ 254 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYD 254 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhh
Confidence 9999995 8999999999999999999988655577899999999999988 99999999999999764 44555888
Q ss_pred cCCC-cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 331 EHTA-AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 331 ~h~~-~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t 367 (415)
+|.. .+..++..+... ++++++ .|+.+++|++..
T Consensus 255 ~h~g~~iw~~~~~~~~~-~~vT~g--~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 255 EHSGKGIWKIAVPIGVI-IKVTGG--NDSTLKLWDLNG 289 (967)
T ss_pred hhhhcceeEEEEcCCce-EEEeec--cCcchhhhhhhc
Confidence 8864 588899888765 777776 899999999865
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-10 Score=111.12 Aligned_cols=208 Identities=14% Similarity=0.158 Sum_probs=135.0
Q ss_pred eeEeecCC-CcEEEEEc-C---CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCC--cEEEEECCCCe
Q 014934 170 LNLVDWSS-HNVLAVGL-G---NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHG--KVQIWDASRCK 241 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~-d---~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg--~V~iwd~~~~~ 241 (415)
+...+|+| ++.|+... + ..|++|++.+++...+.. +...+.+++|+|||+.|+.. ..+| .|.+||+.+++
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 45667999 77777663 2 479999999987665543 44567789999999987754 3344 58888988765
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEEeC-CC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC---
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSGSR-DK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN--- 313 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg--- 313 (415)
. ..+..+........|+ ++.|+..+. ++ .|+++|+..+. ...+..+...+..+.|+|+|++|+.++.++
T Consensus 270 ~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~ 346 (417)
T TIGR02800 270 L-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGF 346 (417)
T ss_pred E-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEeecCCCCccCeEECCCCCEEEEEEccCCce
Confidence 4 3344454445566776 456655543 43 58888887665 334444556677889999999999988776
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-CCCEEEEEE
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVCNLVW 385 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~-~~~V~~l~~ 385 (415)
.|.+||+.++.. ..+... .......|+|+++.++++........+.+.+.. |.....+.. ...+..+.|
T Consensus 347 ~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 347 NIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCC
Confidence 899999987644 333222 234556899999977776642112346666643 444444432 234444444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=9e-10 Score=110.26 Aligned_cols=212 Identities=11% Similarity=0.117 Sum_probs=136.0
Q ss_pred ceeEeecCC-CcEEEEEc-C---CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCC--cEEEEECCCC
Q 014934 169 YLNLVDWSS-HNVLAVGL-G---NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHG--KVQIWDASRC 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d---~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg--~V~iwd~~~~ 240 (415)
.+....|+| ++.|+... + ..|++|++.+++...+.. ..+.+....|+|||++|+.. ..+| .|.+||+.++
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~--~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~ 277 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN--FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR 277 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC--CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 356779999 66666653 2 369999999988766543 23456678999999988754 4455 5888899876
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEe-CCC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC-C-
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGS-RDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N- 313 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d-g- 313 (415)
+.. .+..+........|+ ++.|+..+ .+| .|+++|+.++.. ..+...........|+|||+.|+..+.+ +
T Consensus 278 ~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~--~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~ 354 (430)
T PRK00178 278 QLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA--ERVTFVGNYNARPRLSADGKTLVMVHRQDGN 354 (430)
T ss_pred CeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCCccceEECCCCCEEEEEEccCCc
Confidence 543 455555556677887 45555444 444 577788876652 2222122234457899999999877643 2
Q ss_pred -cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCC
Q 014934 314 -RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKN 388 (415)
Q Consensus 314 -~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~ 388 (415)
.|.+||+.+++.. .+.. ........|+|+|+.++.+........|.++++..+ ....+. ....+...+|+|-
T Consensus 355 ~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 355 FHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred eEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCCCcCCCccCCC
Confidence 5889999887643 3322 222335689999998877764112345777787543 333343 3355667778764
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.1e-10 Score=101.42 Aligned_cols=233 Identities=17% Similarity=0.255 Sum_probs=155.4
Q ss_pred eeEeecCC-C-cEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeE-EEEECCCcEEEEECCCCeeeEE
Q 014934 170 LNLVDWSS-H-NVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 170 i~~l~ws~-~-~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~l-a~g~~dg~V~iwd~~~~~~~~~ 245 (415)
|.-+.|.. . .+|.+. .++.|.+|++...+....++ ...+.+.+++|+|||++| .+...+-.|.+|.+.+.+...
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~- 128 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL- 128 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-
Confidence 44567776 2 344444 46799999999888877776 446789999999999655 455568899999998765443
Q ss_pred ecCCCccEEEEEee--CCEEEEEeC------------------------------------CCcEEEEECCCCCccEEEe
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSR------------------------------------DKSILQRDIRAQEDFVSKL 287 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~------------------------------------dg~I~iwd~~~~~~~~~~~ 287 (415)
+.-....+..++|+ +++.+.+++ +..+.+||---.-+ +. .
T Consensus 129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~-a 206 (447)
T KOG4497|consen 129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VY-A 206 (447)
T ss_pred ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-ee-e
Confidence 22223345666666 344333322 12345555322211 11 1
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce------------------------------------------
Q 014934 288 SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP------------------------------------------ 325 (415)
Q Consensus 288 ~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~------------------------------------------ 325 (415)
..-.-.+..++|+|.+++||+|+.|+.++|.+--+.++
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 11235688999999999999999999998866322110
Q ss_pred ------------------eEEec------cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEE
Q 014934 326 ------------------VLKYC------EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVC 381 (415)
Q Consensus 326 ------------------~~~~~------~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~ 381 (415)
+++++ ...-.+.-++|++|.. .+++-....-+.+-+||++.-+....+....+|.
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~-y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pir 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDST-YAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIR 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCce-EEeeecCCCCceEEEEechhhhhhhhhhhcccee
Confidence 11111 1123466799999975 6676654456789999999887766666788999
Q ss_pred EEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 382 NLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 382 ~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
...|+|....|+.+.|. ..+++|...
T Consensus 366 af~WdP~~prL~vctg~--srLY~W~ps 391 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCTGK--SRLYFWAPS 391 (447)
T ss_pred EEEeCCCCceEEEEcCC--ceEEEEcCC
Confidence 99999999999886664 368888753
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-10 Score=101.23 Aligned_cols=202 Identities=19% Similarity=0.231 Sum_probs=150.5
Q ss_pred CeEEEEECCCCCeEEeEec--CCCCCeEEEEEcC---CCC-eEEEEECCCcEEEEECCCCeeeEEecCCC---c---cEE
Q 014934 187 NCVYLWNACSSKVTKLCDL--GIDDSVCSVGWAN---RNT-HLAVGTSHGKVQIWDASRCKRVRTMEGHR---L---RVG 254 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~--~~~~~V~~v~~sp---~g~-~la~g~~dg~V~iwd~~~~~~~~~l~~h~---~---~V~ 254 (415)
|.+++|++.+.+...+..+ .....+..+.|.- +|. .++.+...|.|.++..........+++-. - ...
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 5688998877665442222 2356788888874 455 56777889999999876544444444321 1 234
Q ss_pred EEEee--CCEEEEEeCCCcEEEEECCCCC-ccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECC-CCceeEE-
Q 014934 255 ALAWS--SSLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQH-STQPVLK- 328 (415)
Q Consensus 255 ~l~~~--~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~-~~~~~~~- 328 (415)
++.|+ +..++++..+|.+.+-+..... +.++.++.|..+++..+|+- +.+++.+|+.|+.+..||++ .++.+.+
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n 205 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN 205 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec
Confidence 56666 5789999999999855544332 22457889999999999985 55788999999999999999 3444444
Q ss_pred eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC-CCcEEEEeeCCCCEEEEEECCCCC
Q 014934 329 YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT-TNTHLSCMDTGSQVCNLVWSKNVN 390 (415)
Q Consensus 329 ~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~-t~~~~~~~~~~~~V~~l~~s~~~~ 390 (415)
.+-|...|.+|.-+|.....+++|+ .|.+|++||++ -++++..-..++.|+.+.++|...
T Consensus 206 ~kvH~~GV~SI~ss~~~~~~I~TGs--YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 206 SKVHTSGVVSIYSSPPKPTYIATGS--YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred ceeeecceEEEecCCCCCceEEEec--cccceeeeehhcccCccccCccccceEEEEecchhh
Confidence 4569999999999998888999988 99999999999 588888877889999999998643
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-08 Score=98.75 Aligned_cols=236 Identities=16% Similarity=0.122 Sum_probs=155.7
Q ss_pred eEeecCC-CcEEEEE-c----CCeEEEEECCC--CCeEEeEecC-CCCCeEEEEEcCCCCeEEEEEC-CCcEEEEECCC-
Q 014934 171 NLVDWSS-HNVLAVG-L----GNCVYLWNACS--SKVTKLCDLG-IDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASR- 239 (415)
Q Consensus 171 ~~l~ws~-~~~la~~-~----d~~V~iwd~~~--~~~~~~~~~~-~~~~V~~v~~sp~g~~la~g~~-dg~V~iwd~~~- 239 (415)
..+.+++ +++|.+. . ++.|..|.+.. +++..+-... .....+.++++|++++|+++.. +|.|.++++..
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence 3456777 5555555 3 35787777655 4554444332 3456788999999999999875 89999999976
Q ss_pred CeeeEE---ec----------CCCccEEEEEeeC--CEEEEEe-CCCcEEEEECCCCCccEE---Ee-ccccCCeEEEEE
Q 014934 240 CKRVRT---ME----------GHRLRVGALAWSS--SLLSSGS-RDKSILQRDIRAQEDFVS---KL-SGHKSEVCGLKW 299 (415)
Q Consensus 240 ~~~~~~---l~----------~h~~~V~~l~~~~--~~l~sgs-~dg~I~iwd~~~~~~~~~---~~-~~h~~~V~~l~~ 299 (415)
+..... +. .......++.+++ +++++.. ....|.+|++......+. .+ ......-..+.|
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f 199 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF 199 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence 332222 21 1234577888884 5666554 345799999976652221 12 234456889999
Q ss_pred eCCCCEEEEEe-CCCcEEEEECC--CCc--eeEEecc----C--CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC--
Q 014934 300 SYDNRELASGG-NDNRLFVWNQH--STQ--PVLKYCE----H--TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT-- 366 (415)
Q Consensus 300 spdg~~lasg~-~dg~I~iwd~~--~~~--~~~~~~~----h--~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~-- 366 (415)
+|+++++.+.. .++.|.++++. ++. .+..+.. . ......|+++|+|++|+++.- ....|.+|++.
T Consensus 200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR--GSNSISVFDLDPA 277 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC--TTTEEEEEEECTT
T ss_pred cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec--cCCEEEEEEEecC
Confidence 99999886654 57889999987 432 2222221 1 125789999999999999886 58899999993
Q ss_pred CCc--EEEEeeC-CCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 367 TNT--HLSCMDT-GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 367 t~~--~~~~~~~-~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+|+ .+..+.. +.....+.++|+|++|+++ ...++.|.+|++.
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va-~~~s~~v~vf~~d 322 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA-NQDSNTVSVFDID 322 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE-ETTTTEEEEEEEE
T ss_pred CCceEEEEEEeCCCCCccEEEEeCCCCEEEEE-ecCCCeEEEEEEe
Confidence 343 3344444 5668999999999999986 4577899999874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=130.17 Aligned_cols=192 Identities=13% Similarity=0.196 Sum_probs=155.8
Q ss_pred eeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 170 LNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 170 i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
+.++.=+| ..+|..+.||.|++|....++.+..........|+.+.|+.+|+.+.++..||.+-+|.+. .+.....+
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~q 2289 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQ 2289 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceeccc
Confidence 44555566 3466777899999999988887777665445899999999999999999999999999987 56677778
Q ss_pred CCCccEEEEEeeCCEEEEEe---CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 248 GHRLRVGALAWSSSLLSSGS---RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 248 ~h~~~V~~l~~~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
.|.....++.|-+..+++++ .++.+.+||.--.......-..|.+.++++++-|..++|++||.+|.|++||++..+
T Consensus 2290 chnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred cCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence 89999999999887777765 468899999765432222237899999999999999999999999999999999988
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
.++++.. +. .+..+++|+ ..|.|+||++..-..++.+.
T Consensus 2370 l~h~~~~---------~~--~~~~f~~~s--s~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2370 LRHTFQA---------LD--TREYFVTGS--SEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred HHHHhhh---------hh--hhheeeccC--cccceEEEEccccchhhcCc
Confidence 8877754 34 344777776 89999999999887777664
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-09 Score=109.32 Aligned_cols=210 Identities=13% Similarity=0.113 Sum_probs=135.0
Q ss_pred ceeEeecCC-CcEEEEEc--C--CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCCc--EEEEECCCC
Q 014934 169 YLNLVDWSS-HNVLAVGL--G--NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGK--VQIWDASRC 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~--d--~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg~--V~iwd~~~~ 240 (415)
.+....|+| ++.|+... + ..|++||+.+++...+... .+......|+|||+.|+.. ..+|. |.++|+.++
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~--~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg 296 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF--PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK 296 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC--CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC
Confidence 456778999 66666653 2 3699999999887655432 3345578999999988764 55665 777788776
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEE-EeCCC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC-C-
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSS-GSRDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N- 313 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~s-gs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d-g- 313 (415)
+. ..+..+.......+|+ ++.|+. ...++ .|+++|+.+++ ...+..........+|+|||++|+..+.+ +
T Consensus 297 ~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~ 373 (448)
T PRK04792 297 AL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGK 373 (448)
T ss_pred Ce-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEEecCCCCCcCeeECCCCCEEEEEEecCCc
Confidence 54 4455555566778888 345544 43444 47777877665 22232222234457899999998876553 3
Q ss_pred -cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCC--eEEEEECCCCcEEEEeeC-CCCEEEEEECCC
Q 014934 314 -RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR--CIRFWNTTTNTHLSCMDT-GSQVCNLVWSKN 388 (415)
Q Consensus 314 -~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~--~I~iwd~~t~~~~~~~~~-~~~V~~l~~s~~ 388 (415)
.|.++|+.+++.. .+.... ......|+|+|+.++.+.. .++ .|.+++. +|.....+.. ...+...+|+|-
T Consensus 374 ~~I~~~dl~~g~~~-~lt~~~-~d~~ps~spdG~~I~~~~~--~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 374 FNIARQDLETGAMQ-VLTSTR-LDESPSVAPNGTMVIYSTT--YQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred eEEEEEECCCCCeE-EccCCC-CCCCceECCCCCEEEEEEe--cCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 4677888877643 332221 2234589999998777664 333 4778887 4555555543 456777888873
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.3e-10 Score=110.06 Aligned_cols=234 Identities=15% Similarity=0.181 Sum_probs=175.7
Q ss_pred eeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCC------------CeEEEEECCCcEEEEEC
Q 014934 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN------------THLAVGTSHGKVQIWDA 237 (415)
Q Consensus 170 i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g------------~~la~g~~dg~V~iwd~ 237 (415)
.+.++|+++.+||.|+...|.+.|..+-+.++.++ .|...|+.|.|.|.. -+||++...|.|.+||.
T Consensus 18 ~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccccCccceEEEecCceEEEEehhhhhhhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 56889999999999999999999999988888887 577899999998731 25788888999999999
Q ss_pred CCCeeeEEecCCCccEEEEEee------CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEe
Q 014934 238 SRCKRVRTMEGHRLRVGALAWS------SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGG 310 (415)
Q Consensus 238 ~~~~~~~~l~~h~~~V~~l~~~------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~ 310 (415)
..+..+..+..|..++..++|- .+.|+.-....+|.+|+..+++.. -+.........|+.+.| |.+.|..-+
T Consensus 97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~-Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF-WKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee-eccccCCcceeeeeeCCCCcceEEEEc
Confidence 9998888899999999999996 267888888899999999999853 33333334567789988 777787777
Q ss_pred CCCcEEEEECCC-------CceeEEeccCCC-------------------------cEEEEEEcCCCCcEEEEEcCCCCC
Q 014934 311 NDNRLFVWNQHS-------TQPVLKYCEHTA-------------------------AVKAIAWSPHLHGLLASGGGTADR 358 (415)
Q Consensus 311 ~dg~I~iwd~~~-------~~~~~~~~~h~~-------------------------~V~~l~~sp~~~~llasggg~~d~ 358 (415)
..|.|.+-+.-. ++..+.-..|.. ....++|+|.-++++... ..+
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~---~pr 252 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT---FPR 252 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE---ecc
Confidence 778877776532 222222223222 012357888877666654 589
Q ss_pred eEEEEECCCCcEEEEeeC-CCCEEEEEECCCC--CeEEEEEecCCCcEEEEECCC
Q 014934 359 CIRFWNTTTNTHLSCMDT-GSQVCNLVWSKNV--NELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 359 ~I~iwd~~t~~~~~~~~~-~~~V~~l~~s~~~--~~l~s~~g~~dg~I~vw~~~s 410 (415)
.+.++|++-..++..+.- .+.+.-+.|-|++ ..|.+ +-.||.+.+|--+.
T Consensus 253 ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfc--lH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 253 ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFC--LHSNGRLTIRVRKE 305 (1062)
T ss_pred ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEE--EecCCeEEEEEeec
Confidence 999999998888887763 3334456666654 56777 55799999997554
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=110.39 Aligned_cols=198 Identities=22% Similarity=0.335 Sum_probs=158.4
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe-cCCCccEEEEEeeC----CEEEEEeCCCcEEEEECCCC
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM-EGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQ 280 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l-~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~ 280 (415)
.|.+.|..|.|...|..|++|+.|..|.+||...++.+..+ .+|...|..-.|-| ..+++++.||.+++-.+...
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 78999999999999999999999999999999888776666 47888888877753 68999999999998876654
Q ss_pred Ccc--EEEeccccCCeEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeEEec---cCCC---cEEEEEEcCCCCcEEEE
Q 014934 281 EDF--VSKLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQPVLKYC---EHTA---AVKAIAWSPHLHGLLAS 351 (415)
Q Consensus 281 ~~~--~~~~~~h~~~V~~l~~spdg-~~lasg~~dg~I~iwd~~~~~~~~~~~---~h~~---~V~~l~~sp~~~~llas 351 (415)
..+ ...+..|.+.|..++.-|+. .-|.+++.|+.+.-+|++...+...+. .+.. ...+++..|...+.+++
T Consensus 220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV 299 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV 299 (559)
T ss_pred cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence 422 34566799999999999855 458999999999999999876544432 2333 46789999999999999
Q ss_pred EcCCCCCeEEEEECCCCcE------EEEe-------eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 352 GGGTADRCIRFWNTTTNTH------LSCM-------DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 352 ggg~~d~~I~iwd~~t~~~------~~~~-------~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
+| .|..+++||.+.-.. +..+ +..-.|++++|+.++..|++ .+.|-.|+++.
T Consensus 300 gG--~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SYnDe~IYLF~ 364 (559)
T KOG1334|consen 300 GG--SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SYNDEDIYLFN 364 (559)
T ss_pred CC--hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee--eecccceEEec
Confidence 98 999999999875321 1111 12356999999998888888 67888999983
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.8e-08 Score=87.62 Aligned_cols=221 Identities=13% Similarity=0.155 Sum_probs=136.6
Q ss_pred CcEEEEEcCCeEEEEECCCC--CeEEeEec--CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecC-----
Q 014934 178 HNVLAVGLGNCVYLWNACSS--KVTKLCDL--GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG----- 248 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~--~~~~~~~~--~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~----- 248 (415)
+++||+-.|.+|.|-..++. .++..+.+ +..-.=.-++|+||+..||.+...|+|++||+.... +..+..
T Consensus 9 Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~ 87 (282)
T PF15492_consen 9 GKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFP 87 (282)
T ss_pred CcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccC
Confidence 88999999999999887764 34444544 223346789999999999999999999999987533 223321
Q ss_pred --CCccEEEEEee--------CCEEEEEeCCCcEEEEECCCC--C--ccEEE--e-ccccCCeEEEEEeCCCCEEEEEeC
Q 014934 249 --HRLRVGALAWS--------SSLLSSGSRDKSILQRDIRAQ--E--DFVSK--L-SGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 249 --h~~~V~~l~~~--------~~~l~sgs~dg~I~iwd~~~~--~--~~~~~--~-~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
-...|..|.|- ...|++-..+|.++-|-+..+ + ...+. + ..+...|+++.++|..++|++||.
T Consensus 88 ~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 88 GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 23467777774 136777778888877765321 1 11122 2 234678999999999999888775
Q ss_pred CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEE-EEEcCCCCC------eEEEEECCCCcEEEE-eeCCCCEEEE
Q 014934 312 DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL-ASGGGTADR------CIRFWNTTTNTHLSC-MDTGSQVCNL 383 (415)
Q Consensus 312 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll-asggg~~d~------~I~iwd~~t~~~~~~-~~~~~~V~~l 383 (415)
... ..+ . -+.....+++-..-.+..+.. ++.. .|+ +-.+|.+.+...... -.....|..+
T Consensus 168 ~~~------~~~--~--s~a~~~GLtaWRiL~~~Pyyk~v~~~--~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~km 235 (282)
T PF15492_consen 168 EQN------QDG--M--SKASSCGLTAWRILSDSPYYKQVTSS--EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKM 235 (282)
T ss_pred CCC------CCc--c--ccccccCceEEEEcCCCCcEEEcccc--CccccccccccceeeccceeeeeccccCCCceEEE
Confidence 432 000 0 001122222222221211111 1111 111 223444443332221 1245679999
Q ss_pred EECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 384 VWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 384 ~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
..||||..||+.| .+|.|.+|++|++.+
T Consensus 236 SlSPdg~~La~ih--~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 236 SLSPDGSLLACIH--FSGSLSLWEIPSLRL 263 (282)
T ss_pred EECCCCCEEEEEE--cCCeEEEEecCcchh
Confidence 9999999999975 689999999999865
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.6e-08 Score=107.23 Aligned_cols=233 Identities=12% Similarity=0.104 Sum_probs=151.9
Q ss_pred eEeecCC--CcEEEEE-cCCeEEEEECCCCCeEEeEec-CC------------CCCeEEEEEcCCCCeEEEEEC-CCcEE
Q 014934 171 NLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GI------------DDSVCSVGWANRNTHLAVGTS-HGKVQ 233 (415)
Q Consensus 171 ~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~------------~~~V~~v~~sp~g~~la~g~~-dg~V~ 233 (415)
..+++++ ++++++. ..+.|++||... ........ +. -.....|++.++++.|.++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 3456665 3344444 457899999754 43333221 11 123588999998887666544 56799
Q ss_pred EEECCCCeeeEEecCC-----------------CccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccc---
Q 014934 234 IWDASRCKRVRTMEGH-----------------RLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGH--- 290 (415)
Q Consensus 234 iwd~~~~~~~~~l~~h-----------------~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h--- 290 (415)
++|..++. +.++.+. -..-..+++++ .++++.+.++.|++||...+. +..+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~--v~~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV--TRVFSGDGYE 726 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe--EEEEecCCcc
Confidence 99987754 3333210 01235677773 466777788899999987654 2222111
Q ss_pred ------------cCCeEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceeEEe-------------ccC--------CCcE
Q 014934 291 ------------KSEVCGLKWSYDNREL-ASGGNDNRLFVWNQHSTQPVLKY-------------CEH--------TAAV 336 (415)
Q Consensus 291 ------------~~~V~~l~~spdg~~l-asg~~dg~I~iwd~~~~~~~~~~-------------~~h--------~~~V 336 (415)
-....+|+++|+++.| ++-..++.|++||+.++...... ..+ -...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 1235679999999854 55566789999999876432111 000 1124
Q ss_pred EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC--------------CCEEEEEECCCCCeEEEEEecCCCc
Q 014934 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--------------SQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~--------------~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
.+++++++|. ++++.. .++.|++||..++........+ .....++++++|+.+++ ...++.
T Consensus 807 ~Gvavd~dG~-LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa--Dt~Nn~ 881 (1057)
T PLN02919 807 LGVLCAKDGQ-IYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA--DTNNSL 881 (1057)
T ss_pred ceeeEeCCCc-EEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE--ECCCCE
Confidence 6889999987 777665 7899999999988765443322 24678999999997777 678899
Q ss_pred EEEEECCCCc
Q 014934 403 IIVWRYPTMS 412 (415)
Q Consensus 403 I~vw~~~s~~ 412 (415)
|++||+.+.+
T Consensus 882 Irvid~~~~~ 891 (1057)
T PLN02919 882 IRYLDLNKGE 891 (1057)
T ss_pred EEEEECCCCc
Confidence 9999998764
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.2e-09 Score=101.05 Aligned_cols=239 Identities=13% Similarity=0.103 Sum_probs=169.2
Q ss_pred CcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC---------------
Q 014934 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG--------------- 230 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg--------------- 230 (415)
++.++.+.||| +.+|+......|.+|........ ..+.| ..|..+.|+|.+++|.+=...+
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l--~~~~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKL--VRFRH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccccchhhe--eeeec-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 56678889999 88888888889999987776533 33334 5799999999999999855433
Q ss_pred cEEEEECCCCeeeEEecCCCcc--EE-EEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccc-cCCeEEEEEeCCC-
Q 014934 231 KVQIWDASRCKRVRTMEGHRLR--VG-ALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGH-KSEVCGLKWSYDN- 303 (415)
Q Consensus 231 ~V~iwd~~~~~~~~~l~~h~~~--V~-~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg- 303 (415)
.+.+||+.++..+..+.....+ .. -+.|+ ..+++-- ....++++++ +..-....+..- ...|....|+|.+
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n 186 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGN 186 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCC
Confidence 4999999999999998876555 33 45555 3333322 3456899997 332111111111 2568888999964
Q ss_pred -CEEEE-----EeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcC--------CCCCeEEEEECCCCc
Q 014934 304 -RELAS-----GGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGG--------TADRCIRFWNTTTNT 369 (415)
Q Consensus 304 -~~las-----g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg--------~~d~~I~iwd~~t~~ 369 (415)
..||. ++.++.++||.+..++.+.+..-.+..-..+.|.+.|.+|++-.-. .....+.++++....
T Consensus 187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~ 266 (561)
T COG5354 187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS 266 (561)
T ss_pred CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence 34554 6778899999998776665544344444678999999877654310 013568888887555
Q ss_pred EEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 370 HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 370 ~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+....+..++|...+|.|+++.+++.+|+.+-.+.+++++.
T Consensus 267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred cceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 44444668999999999999999999999998999988865
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.4e-08 Score=93.14 Aligned_cols=220 Identities=11% Similarity=0.109 Sum_probs=149.3
Q ss_pred CeEEEEEC--CCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC----CCcEEEEECCCC--e--eeEEecCCCccEEEE
Q 014934 187 NCVYLWNA--CSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS----HGKVQIWDASRC--K--RVRTMEGHRLRVGAL 256 (415)
Q Consensus 187 ~~V~iwd~--~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~----dg~V~iwd~~~~--~--~~~~l~~h~~~V~~l 256 (415)
+.|++|++ .++++..+...........++++|++++|.+... +|.|..|++... + .+............+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 67888877 6666655444334567788999999999998876 568999988654 2 333333233445567
Q ss_pred Eee--CCEEEEEe-CCCcEEEEECCCCCccEEE--ec-----------cccCCeEEEEEeCCCCEEEEEe-CCCcEEEEE
Q 014934 257 AWS--SSLLSSGS-RDKSILQRDIRAQEDFVSK--LS-----------GHKSEVCGLKWSYDNRELASGG-NDNRLFVWN 319 (415)
Q Consensus 257 ~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~--~~-----------~h~~~V~~l~~spdg~~lasg~-~dg~I~iwd 319 (415)
+.+ +++|+++. .+|.|.++++......... .. .......++.++|+|++|++.. ....|.+|+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 775 56777765 5899999999875422221 11 1124578899999999888764 345799999
Q ss_pred CCCCc--e--eEEec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC--CCc--EEEEeeC-------CCCEEEE
Q 014934 320 QHSTQ--P--VLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT--TNT--HLSCMDT-------GSQVCNL 383 (415)
Q Consensus 320 ~~~~~--~--~~~~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~--t~~--~~~~~~~-------~~~V~~l 383 (415)
+.... . ...+. ........++|+|+++++++... .++.|.++++. ++. .++.+.. ......+
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE--LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC--CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence 87654 2 12222 34566899999999998888886 89999999988 443 2333321 1257889
Q ss_pred EECCCCCeEEEEEecCCCcEEEEECC
Q 014934 384 VWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 384 ~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.++|+|++|.++. ...+.|.+|++.
T Consensus 251 ~ispdg~~lyvsn-r~~~sI~vf~~d 275 (345)
T PF10282_consen 251 AISPDGRFLYVSN-RGSNSISVFDLD 275 (345)
T ss_dssp EE-TTSSEEEEEE-CTTTEEEEEEEC
T ss_pred EEecCCCEEEEEe-ccCCEEEEEEEe
Confidence 9999999999874 457799999994
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-10 Score=122.20 Aligned_cols=184 Identities=15% Similarity=0.278 Sum_probs=149.1
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec-CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccE
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFV 284 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~ 284 (415)
-..|.++.=+|...+.++|+.||.|++|.-..++.+..+. ....+|+.+.|+ |+.+..+..||.+.+|.+.. ++.
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--k~~ 2285 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--KPY 2285 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--cce
Confidence 3567777778888899999999999999998887776664 334889999998 88999999999999999873 357
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEe---CCCcEEEEECCC--C-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCC
Q 014934 285 SKLSGHKSEVCGLKWSYDNRELASGG---NDNRLFVWNQHS--T-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR 358 (415)
Q Consensus 285 ~~~~~h~~~V~~l~~spdg~~lasg~---~dg~I~iwd~~~--~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~ 358 (415)
...+.|......+.|-. ..+++++ .++.+.+||..- + ..++ ..|.+.++++++.|... +|.+|| .+|
T Consensus 2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q-llisgg--r~G 2358 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ-LLISGG--RKG 2358 (2439)
T ss_pred eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcce-EEEecC--CcC
Confidence 77888999999988874 6677765 457899999642 2 2333 68999999999999876 899987 999
Q ss_pred eEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 359 CIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 359 ~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
.|++||++..++++.+.. +. ...++++ |...|.|+||++...
T Consensus 2359 ~v~l~D~rqrql~h~~~~--------~~-~~~~f~~--~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA--------LD-TREYFVT--GSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cEEEeehHHHHHHHHhhh--------hh-hhheeec--cCcccceEEEEcccc
Confidence 999999998887766643 44 4556666 889999999999765
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.5e-10 Score=101.81 Aligned_cols=197 Identities=16% Similarity=0.271 Sum_probs=142.4
Q ss_pred CCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe-----eeEEecCCC------------ccEEEEEee----CCEEEE
Q 014934 207 IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-----RVRTMEGHR------------LRVGALAWS----SSLLSS 265 (415)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~-----~~~~l~~h~------------~~V~~l~~~----~~~l~s 265 (415)
..+.|.+|.|...|.+||+|..+|.|.++.-.... ....++.|. ..|..+.|. ...++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45789999999999999999999999999754322 233343343 468888997 357777
Q ss_pred EeCCCcEEEEECCCCCcc----------------------------------EEE-eccccCCeEEEEEeCCCCEEEEEe
Q 014934 266 GSRDKSILQRDIRAQEDF----------------------------------VSK-LSGHKSEVCGLKWSYDNRELASGG 310 (415)
Q Consensus 266 gs~dg~I~iwd~~~~~~~----------------------------------~~~-~~~h~~~V~~l~~spdg~~lasg~ 310 (415)
.+.|++|++|-++..... .+. -.+|...|.++.++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 889999999988653210 011 125778899999999999998874
Q ss_pred CCCcEEEEECCCCcee---EEecc-----CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE------Ee--
Q 014934 311 NDNRLFVWNQHSTQPV---LKYCE-----HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS------CM-- 374 (415)
Q Consensus 311 ~dg~I~iwd~~~~~~~---~~~~~-----h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~------~~-- 374 (415)
|=+|.+|++.-...- .-++. -+.-|++..|+|..-.+++-++ ..|+|++-|++...+-. ..
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS--SKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS--SKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec--CCCcEEEeechhhhhhcchhhhhcccc
Confidence 678999998643221 12222 2346889999999888887766 79999999998543211 10
Q ss_pred e---------CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 375 D---------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 375 ~---------~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+ .-+.|..+.|+.+|+++++ - +-.+|++||+.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryils--R-Dyltvk~wD~n 301 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILS--R-DYLTVKLWDLN 301 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEE--e-ccceeEEEecc
Confidence 0 1145888999999999998 3 34699999985
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8e-09 Score=94.78 Aligned_cols=236 Identities=13% Similarity=0.242 Sum_probs=158.1
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEEEEECCCCC-----eEEeEe-----------cCCCCCeEEEEEcCCCC--eEEEEEC
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSK-----VTKLCD-----------LGIDDSVCSVGWANRNT--HLAVGTS 228 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~-----~~~~~~-----------~~~~~~V~~v~~sp~g~--~la~g~~ 228 (415)
.+.++.|.- ++.||+|. +|.|.++.-.... ....++ +.-...|..+.|.++++ .++..+.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 477888887 99999994 6788888643321 111111 11235688999998764 6677789
Q ss_pred CCcEEEEECCCCee-----------------------------------eEEe-cCCCccEEEEEeeC--CEEEEEeCCC
Q 014934 229 HGKVQIWDASRCKR-----------------------------------VRTM-EGHRLRVGALAWSS--SLLSSGSRDK 270 (415)
Q Consensus 229 dg~V~iwd~~~~~~-----------------------------------~~~l-~~h~~~V~~l~~~~--~~l~sgs~dg 270 (415)
|.+|++|.+..... .+.+ .+|.--|.++.++. ..+++ ..|=
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS-ADdL 185 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS-ADDL 185 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee-ccce
Confidence 99999998743110 0111 25777788888883 44554 4677
Q ss_pred cEEEEECCCCCccEEE--eccc-----cCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCce------e----------
Q 014934 271 SILQRDIRAQEDFVSK--LSGH-----KSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQP------V---------- 326 (415)
Q Consensus 271 ~I~iwd~~~~~~~~~~--~~~h-----~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~~~------~---------- 326 (415)
.|-+|++.-..+.... ++.+ ..-|++..|+| ..+.|+-.+..|.|++-|++.... +
T Consensus 186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r 265 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR 265 (433)
T ss_pred eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence 8999998765543332 2222 23488899999 456788889999999999985321 1
Q ss_pred EEeccCCCcEEEEEEcCCCCcEEEEEcCCCC-CeEEEEECC-CCcEEEEeeCC-------------CC---EEEEEECCC
Q 014934 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTAD-RCIRFWNTT-TNTHLSCMDTG-------------SQ---VCNLVWSKN 388 (415)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~llasggg~~d-~~I~iwd~~-t~~~~~~~~~~-------------~~---V~~l~~s~~ 388 (415)
.-|.+-...|..+.|++.|+++|+ .| -+|++||+. ..+++.++... .. -..++|+.+
T Consensus 266 sffseiIsSISDvKFs~sGryils-----RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 266 SFFSEIISSISDVKFSHSGRYILS-----RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred hhHHHHhhhhhceEEccCCcEEEE-----eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 111223456889999999996666 34 789999994 44555554311 11 246899999
Q ss_pred CCeEEEEEecCCCcEEEEECCCCc
Q 014934 389 VNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+..+++ |+-.+.+++++...+.
T Consensus 341 ~~~v~T--Gsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 341 DSYVMT--GSYNNVFRVFNLARGS 362 (433)
T ss_pred cceEec--ccccceEEEecCCCCc
Confidence 999988 8788899999965543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-07 Score=85.95 Aligned_cols=219 Identities=15% Similarity=0.080 Sum_probs=143.3
Q ss_pred CCeEEEEECCCCCeEEeEecCC-CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCCEEE
Q 014934 186 GNCVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLS 264 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~-~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~ 264 (415)
++.|..||..+|+..-...+.. .....+. ..+++.++++++.++.|..||..+++.+-.+.............+..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence 5789999999999887776532 1222221 2336677888899999999999999987666532111111344577888
Q ss_pred EEeCCCcEEEEECCCCCccEEEecccc---CCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCc------
Q 014934 265 SGSRDKSILQRDIRAQEDFVSKLSGHK---SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAA------ 335 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~~~~~~~~~h~---~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~------ 335 (415)
+++.++.|+.+|..+++..-....... ..........++..++.+..++.|..+|+++|+.+..+......
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 160 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS 160 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE
T ss_pred cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee
Confidence 888999999999998884333122221 11222333334888999998999999999999998888654422
Q ss_pred ----EEEEEEcCCCCcEEEEEcCCCCCe-EEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 336 ----VKAIAWSPHLHGLLASGGGTADRC-IRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 336 ----V~~l~~sp~~~~llasggg~~d~~-I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+..-....++ .++++. .++. +.+ |+.+++.+.... ...+.. ....++..|++ +..++.|..||..+
T Consensus 161 ~~~~~~~~~~~~~~-~v~~~~---~~g~~~~~-d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~--~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 161 SFSDINGSPVISDG-RVYVSS---GDGRVVAV-DLATGEKLWSKP-ISGIYS-LPSVDGGTLYV--TSSDGRLYALDLKT 231 (238)
T ss_dssp EETTEEEEEECCTT-EEEEEC---CTSSEEEE-ETTTTEEEEEEC-SS-ECE-CEECCCTEEEE--EETTTEEEEEETTT
T ss_pred eecccccceEEECC-EEEEEc---CCCeEEEE-ECCCCCEEEEec-CCCccC-CceeeCCEEEE--EeCCCEEEEEECCC
Confidence 1222222234 466655 3564 666 999999775443 333333 24567777777 34789999999999
Q ss_pred Cccc
Q 014934 411 MSKV 414 (415)
Q Consensus 411 ~~~l 414 (415)
++.+
T Consensus 232 G~~~ 235 (238)
T PF13360_consen 232 GKVV 235 (238)
T ss_dssp TEEE
T ss_pred CCEE
Confidence 8753
|
... |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=108.21 Aligned_cols=239 Identities=16% Similarity=0.262 Sum_probs=169.7
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCC-eEEeEecCCCCCeEEEEEcCCC--CeEEEEECCCcEEEEECCCC---e
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSK-VTKLCDLGIDDSVCSVGWANRN--THLAVGTSHGKVQIWDASRC---K 241 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~-~~~~~~~~~~~~V~~v~~sp~g--~~la~g~~dg~V~iwd~~~~---~ 241 (415)
.++.+..+| ++-+|.+....+++.|+...- ..+.+..-..-.|-.+.|++.. .+-++....-.-.+|++... .
T Consensus 26 ~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a 105 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA 105 (1081)
T ss_pred cccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccc
Confidence 456677777 666777766778888876642 2222211113457888998754 45566666667779998532 3
Q ss_pred eeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 014934 242 RVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iw 318 (415)
.--.+.+|...|+.+-|+ +..+++++.|-.+..||+++...++.........-..++|+-....+.+.+..+.|++|
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW 185 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence 334567899999999998 58999999999999999999887777776666778889999644444444566779999
Q ss_pred ECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC--cEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 319 NQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN--THLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 319 d~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~--~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
|++.+ .++..+++|...|..++|...-...+.+++ .|++|++||.... +.-..+.+..+|..-.+.|-|.-.+..
T Consensus 186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~--~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~m 263 (1081)
T KOG0309|consen 186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS--NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIM 263 (1081)
T ss_pred eccCCCcceEEecccceeeehHHHhhhhhhhhcccC--CCCceeeecccccccccceeccccCcceeccccccCceeEec
Confidence 99865 678899999999999999876666677766 8999999998653 344555677888888888876544432
Q ss_pred EecCCCcEEEEECC
Q 014934 396 HGYSQNQIIVWRYP 409 (415)
Q Consensus 396 ~g~~dg~I~vw~~~ 409 (415)
-.-.++.+.+++.+
T Consensus 264 p~~G~n~v~~~~c~ 277 (1081)
T KOG0309|consen 264 PMVGGNMVPQLRCE 277 (1081)
T ss_pred cccCCeeeeecccc
Confidence 12223344444443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.5e-08 Score=94.16 Aligned_cols=233 Identities=13% Similarity=0.127 Sum_probs=157.8
Q ss_pred EeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCC--eEEE-----EECCCcEEEEECCCCee
Q 014934 172 LVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNT--HLAV-----GTSHGKVQIWDASRCKR 242 (415)
Q Consensus 172 ~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~--~la~-----g~~dg~V~iwd~~~~~~ 242 (415)
.+.|+- ++++|--.+..++|+++ ++.....-.. -....|....|+|.|+ .||. +...+.++||.+..++.
T Consensus 136 ~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~ 214 (561)
T COG5354 136 VLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV 214 (561)
T ss_pred eeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence 456776 55555556789999997 5443321100 1136789999999653 4454 35678899999987766
Q ss_pred eEEecCCCccEEEEEee--CCEEEEEe-----------CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEE
Q 014934 243 VRTMEGHRLRVGALAWS--SSLLSSGS-----------RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASG 309 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~~~l~sgs-----------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg 309 (415)
+.+-.-....-..+.|+ +++|++-- ....+++++++.... .....-.++|...+|.|.++.|++.
T Consensus 215 l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i--~V~~~~~~pVhdf~W~p~S~~F~vi 292 (561)
T COG5354 215 LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI--PVEKDLKDPVHDFTWEPLSSRFAVI 292 (561)
T ss_pred eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc--ceeccccccceeeeecccCCceeEE
Confidence 65544333444567777 45443321 124588889886552 2222557899999999999988775
Q ss_pred e--CCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECC
Q 014934 310 G--NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSK 387 (415)
Q Consensus 310 ~--~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~ 387 (415)
+ .+-.+.++|++.. ..+ ......=+.+.|+|.++++|+.|=|...|.|-+||.........--.+....-+.|+|
T Consensus 293 ~g~~pa~~s~~~lr~N-l~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wsp 369 (561)
T COG5354 293 SGYMPASVSVFDLRGN-LRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSP 369 (561)
T ss_pred ecccccceeecccccc-eEE--ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccC
Confidence 4 6788999999876 333 2445556778999999998888766678999999988765444222334445578999
Q ss_pred CCCeEEEEEec----CCCcEEEEECCC
Q 014934 388 NVNELVSTHGY----SQNQIIVWRYPT 410 (415)
Q Consensus 388 ~~~~l~s~~g~----~dg~I~vw~~~s 410 (415)
+++++.+..-+ .|+.|.||++..
T Consensus 370 d~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 370 DGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred CceEEEecCCCcccccCcceEEEEecC
Confidence 99998774322 378999999854
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-07 Score=90.69 Aligned_cols=212 Identities=14% Similarity=0.139 Sum_probs=155.4
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecC-C----CC---CeE---EEE-EcC-CCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLG-I----DD---SVC---SVG-WAN-RNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~-~----~~---~V~---~v~-~sp-~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
+.-++....|.|++||..+.++.++- ++ . .. .+. -+. |++ +|.+++..+ .|.+.|.+...+-.+.
T Consensus 278 GkrIvFq~~GdIylydP~td~lekld-I~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq 355 (668)
T COG4946 278 GKRIVFQNAGDIYLYDPETDSLEKLD-IGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ 355 (668)
T ss_pred CcEEEEecCCcEEEeCCCcCcceeee-cCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE
Confidence 56788888999999999987765543 22 1 00 111 111 443 688888765 5678888776554443
Q ss_pred EecCCCccEEEEEee--CCEEEEEeCCC-cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 245 TMEGHRLRVGALAWS--SSLLSSGSRDK-SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~--~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
. +|.+.|.-..+. ++-++.|..|| .+-++|.++++ +..+...-+.|.+++.+++|++++++.....|.+.|+.
T Consensus 356 v--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 356 V--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred c--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 2 456666665554 67899999999 89999999886 56667777899999999999999999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEE-cCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASG-GGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasg-gg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
++.....=+...+-|+.++|+|+++++..+- .|..-..|+++|+.+++........+.-.+-+|.|++++|..-
T Consensus 432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 9977554445667899999999998554332 1234567999999999876655444555678899999988653
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-06 Score=79.79 Aligned_cols=212 Identities=15% Similarity=0.162 Sum_probs=141.0
Q ss_pred EeecCC--CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEc-CCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 172 LVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWA-NRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 172 ~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~s-p~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
.+.|.+ +.++.+. ..+.|+.|+..++.... +... ...++.+. ++| .|+++...+ +.++|..+++....+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~---~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP---GPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS---SEEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC---CCceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEee
Confidence 567886 5566666 47899999998876544 3322 27777887 564 455555554 5666998886443333
Q ss_pred C-----CCccEEEEEee--CCEEEEEeCC--------CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEE-EEeC
Q 014934 248 G-----HRLRVGALAWS--SSLLSSGSRD--------KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELA-SGGN 311 (415)
Q Consensus 248 ~-----h~~~V~~l~~~--~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-sg~~ 311 (415)
. .....+.+++. +++.++.... |.|..++.. +. ...+...-...++|+|+|+++.|. +-+.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheeecccc
Confidence 2 45678889988 4555555433 457777776 33 333333455688999999999775 5567
Q ss_pred CCcEEEEECCCCce-------eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC-CCEEEE
Q 014934 312 DNRLFVWNQHSTQP-------VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQVCNL 383 (415)
Q Consensus 312 dg~I~iwd~~~~~~-------~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-~~V~~l 383 (415)
.+.|..|++..... +..+....+..-.+++..+|+ |+++.- ..+.|.++|.. |+.+..+... ..++++
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~--~~~~I~~~~p~-G~~~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADW--GGGRIVVFDPD-GKLLREIELPVPRPTNC 230 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE--TTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEc--CCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence 78899999863221 222222333578899999997 666543 47899999988 9998888855 789999
Q ss_pred EE-CCCCCeEEEEE
Q 014934 384 VW-SKNVNELVSTH 396 (415)
Q Consensus 384 ~~-s~~~~~l~s~~ 396 (415)
+| -++.+.|..|+
T Consensus 231 ~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 231 AFGGPDGKTLYVTT 244 (246)
T ss_dssp EEESTTSSEEEEEE
T ss_pred EEECCCCCEEEEEe
Confidence 99 57777777754
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-08 Score=93.11 Aligned_cols=83 Identities=34% Similarity=0.628 Sum_probs=74.2
Q ss_pred CeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 014934 240 CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (415)
Q Consensus 240 ~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~i 317 (415)
...+.++.+|.+.+.+++|. +..|++|..|..+.+||+.........+.+|...|..+..-+--+.|.+++.||.|.+
T Consensus 187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 45667788999999999999 4799999999999999998877667888999999999998888899999999999999
Q ss_pred EECCC
Q 014934 318 WNQHS 322 (415)
Q Consensus 318 wd~~~ 322 (415)
||.+.
T Consensus 267 w~mn~ 271 (404)
T KOG1409|consen 267 WNMNV 271 (404)
T ss_pred Eeccc
Confidence 99853
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.5e-07 Score=83.22 Aligned_cols=222 Identities=12% Similarity=0.123 Sum_probs=150.6
Q ss_pred CCeEEEEECCC--CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC---CcEEEEECCC--Cee--eEEecCCCccEEEE
Q 014934 186 GNCVYLWNACS--SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASR--CKR--VRTMEGHRLRVGAL 256 (415)
Q Consensus 186 d~~V~iwd~~~--~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d---g~V~iwd~~~--~~~--~~~l~~h~~~V~~l 256 (415)
++.|++|++.+ +++.........+.++-++|+|++++|.++..+ |.|.-|.+.. |+. +........+-+-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56799998874 444444334567889999999999998888654 6788877764 332 11111112223566
Q ss_pred Eee--CCEEEEEeC-CCcEEEEECCCCCcc--EEEeccccCC----------eEEEEEeCCCCEEEEEeC-CCcEEEEEC
Q 014934 257 AWS--SSLLSSGSR-DKSILQRDIRAQEDF--VSKLSGHKSE----------VCGLKWSYDNRELASGGN-DNRLFVWNQ 320 (415)
Q Consensus 257 ~~~--~~~l~sgs~-dg~I~iwd~~~~~~~--~~~~~~h~~~----------V~~l~~spdg~~lasg~~-dg~I~iwd~ 320 (415)
+.+ +++++++.. -|.|.++-++....+ ......|.+. +....+.|++++|++.+- -.+|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 666 567777764 578999988764322 1122234444 788899999999988753 346999999
Q ss_pred CCCceeEEec---cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-c---EEEEee-------CCCCEEEEEEC
Q 014934 321 HSTQPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-T---HLSCMD-------TGSQVCNLVWS 386 (415)
Q Consensus 321 ~~~~~~~~~~---~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~---~~~~~~-------~~~~V~~l~~s 386 (415)
..++....-. ...+.-+.|+|+|+++..++.+- .+++|-+|..... . .++.+. .......+..+
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E--L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE--LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEec--cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 9775432111 34556789999999998888876 8999999998873 2 233332 23557789999
Q ss_pred CCCCeEEEEEecCCCcEEEEECCC
Q 014934 387 KNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 387 ~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
++|++|.++-- ..+.|.+|.+..
T Consensus 253 ~dGrFLYasNR-g~dsI~~f~V~~ 275 (346)
T COG2706 253 PDGRFLYASNR-GHDSIAVFSVDP 275 (346)
T ss_pred CCCCEEEEecC-CCCeEEEEEEcC
Confidence 99999998643 344888888754
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.5e-07 Score=88.41 Aligned_cols=146 Identities=12% Similarity=0.101 Sum_probs=116.8
Q ss_pred cCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC-cEEEEECCCCeeeEEecCCCccE
Q 014934 175 WSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG-KVQIWDASRCKRVRTMEGHRLRV 253 (415)
Q Consensus 175 ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg-~V~iwd~~~~~~~~~l~~h~~~V 253 (415)
-.+++.+|.-+-|.+.|.+...+-.++ +++...|.-..+..+++-++.|..|| .+-|+|..+++.. .+...-+.|
T Consensus 329 ~~~Gd~ia~VSRGkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I 404 (668)
T COG4946 329 VVNGDYIALVSRGKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNI 404 (668)
T ss_pred cCCCcEEEEEecCcEEEECCCCCeeEE---cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccce
Confidence 445788888889999998876665444 46778899999999999999999999 8999999887644 455567889
Q ss_pred EEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC----cEEEEECCCCce
Q 014934 254 GALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN----RLFVWNQHSTQP 325 (415)
Q Consensus 254 ~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg----~I~iwd~~~~~~ 325 (415)
.++..+ +..++.+.....|.+.|+.++. ....-+...+-|..+.|||+++++|-+--+| .|+++|+.+++.
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngn-v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGN-VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCC-eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 999988 5678888888899999999987 2333344557799999999999999876655 589999887654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-07 Score=83.98 Aligned_cols=226 Identities=12% Similarity=0.068 Sum_probs=148.5
Q ss_pred cEEEEE-cCCeEEEEECCCCCe-EEeEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEE
Q 014934 179 NVLAVG-LGNCVYLWNACSSKV-TKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGA 255 (415)
Q Consensus 179 ~~la~~-~d~~V~iwd~~~~~~-~~~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~ 255 (415)
.+||+| ..|...+|...+.+. ..++. .+...|+-+.=..+ .-.+..++.|.++++.++.-+.....+....-.+..
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd-~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCD-VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeec-ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 467776 568999999987654 44444 33333333222222 234666788888888887644322222211123667
Q ss_pred EEee--CCEEEEEeCCCcEEEEECCCCCccEEE--eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeE----
Q 014934 256 LAWS--SSLLSSGSRDKSILQRDIRAQEDFVSK--LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL---- 327 (415)
Q Consensus 256 l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~---- 327 (415)
++.+ +.++++.+....|..|.+......+.. .......-.+..|+.....+|++.+||.+.|||++......
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 7776 689999999999999999876543332 22334445678899999999999999999999998753322
Q ss_pred -EeccCCCcEEEEEEcCCCCc-EEEEEcCCCCCeEEEEECCCCcEEEEee--------CCCC-EEEEEECCCCCeEEEEE
Q 014934 328 -KYCEHTAAVKAIAWSPHLHG-LLASGGGTADRCIRFWNTTTNTHLSCMD--------TGSQ-VCNLVWSKNVNELVSTH 396 (415)
Q Consensus 328 -~~~~h~~~V~~l~~sp~~~~-llasggg~~d~~I~iwd~~t~~~~~~~~--------~~~~-V~~l~~s~~~~~l~s~~ 396 (415)
+-..|.+++..+.|++.|.. ||.-.. .-+.+.+.|++++...+.+. +..+ |....|+.++.-+.+.
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sE--hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~- 320 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISE--HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK- 320 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEec--CcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc-
Confidence 22358999999999987642 333332 47889999999988766553 3334 7888888887766652
Q ss_pred ecCCCcEEEEECCC
Q 014934 397 GYSQNQIIVWRYPT 410 (415)
Q Consensus 397 g~~dg~I~vw~~~s 410 (415)
. .-.+.=|++.+
T Consensus 321 -~-e~~~ae~ni~s 332 (344)
T KOG4532|consen 321 -N-ELQGAEYNILS 332 (344)
T ss_pred -c-chhhheeeccc
Confidence 2 22455555544
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=105.44 Aligned_cols=238 Identities=17% Similarity=0.296 Sum_probs=164.8
Q ss_pred ceeEeecCC---Cc-EEEEEcCCeEEEEECCC--CCeEEeEecCCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCCC-
Q 014934 169 YLNLVDWSS---HN-VLAVGLGNCVYLWNACS--SKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRC- 240 (415)
Q Consensus 169 ~i~~l~ws~---~~-~la~~~d~~V~iwd~~~--~~~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~~- 240 (415)
.+..+.|++ .. .++..+...-.+|++.. .+.+.++..+|...|+.+.|.|.. ..+|+++.|-.|..||+++.
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 344567887 23 44444567788898754 344555555999999999999854 68999999999999999875
Q ss_pred eeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEE
Q 014934 241 KRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLF 316 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~ 316 (415)
..+............++|+ |+.++ .+..+.|.+||.+.+..++..+++|...|.++.|+. -...+.+++.|++|+
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 4555665566678889998 45544 456778999999999989999999999999999875 345678999999999
Q ss_pred EEECCCCceeE-EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEE---------EECCCC-cEEEEee-CCCCEEEEE
Q 014934 317 VWNQHSTQPVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF---------WNTTTN-THLSCMD-TGSQVCNLV 384 (415)
Q Consensus 317 iwd~~~~~~~~-~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~i---------wd~~t~-~~~~~~~-~~~~V~~l~ 384 (415)
.||........ .......+|..-++-|.|.....--.- .+..+.+ |+..++ +.++.+. |...|....
T Consensus 228 fw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~-G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFl 306 (1081)
T KOG0309|consen 228 FWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV-GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFL 306 (1081)
T ss_pred eecccccccccceeccccCcceeccccccCceeEecccc-CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHh
Confidence 99986543221 122445677777888877654332210 1223333 443332 3455554 555666665
Q ss_pred ECCCC----------CeEEEEEecCCCcEEEEECCC
Q 014934 385 WSKNV----------NELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 385 ~s~~~----------~~l~s~~g~~dg~I~vw~~~s 410 (415)
|-..+ -.|++ -+.|..+++|-+.+
T Consensus 307 WR~r~e~~~d~d~rdfQLVT--WSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 307 WRKRKECDGDYDSRDFQLVT--WSKDQTLRLWPIDS 340 (1081)
T ss_pred hhhcccccCCCCccceeEEE--eecCCceEeeeccH
Confidence 54432 25666 67899999998864
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.1e-09 Score=96.58 Aligned_cols=158 Identities=18% Similarity=0.224 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCeEEEEECCCcEEEEECCCCee----eEEec--CCCccEEEEEeeCCEEEEEe---CCCcEEEEECCCCC
Q 014934 211 VCSVGWANRNTHLAVGTSHGKVQIWDASRCKR----VRTME--GHRLRVGALAWSSSLLSSGS---RDKSILQRDIRAQE 281 (415)
Q Consensus 211 V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~----~~~l~--~h~~~V~~l~~~~~~l~sgs---~dg~I~iwd~~~~~ 281 (415)
...+..++.+++||++..+....+++...... +.... .-...+..+... .....+. ....+.+|....+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc-ceEEEEeecCCceeeeeeccccc-
Confidence 34456678888999988888877777654322 22221 122223333332 2333333 3344455554432
Q ss_pred ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeE
Q 014934 282 DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (415)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I 360 (415)
....+.||-..+..++|+||+++++++..|..|+|-.......+..|- +|+..|..++.-++. +|+++| -|++|
T Consensus 143 -~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~s--GD~tl 217 (390)
T KOG3914|consen 143 -RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGS--GDKTL 217 (390)
T ss_pred -CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecC--CCCcE
Confidence 345667999999999999999999999999999998876665555543 799999999999874 566666 49999
Q ss_pred EEEECCCCcEEEEee
Q 014934 361 RFWNTTTNTHLSCMD 375 (415)
Q Consensus 361 ~iwd~~t~~~~~~~~ 375 (415)
++||+.+|+++.+++
T Consensus 218 r~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 218 RLWDITSGKLLDTCD 232 (390)
T ss_pred EEEecccCCcccccc
Confidence 999999999887664
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.5e-07 Score=87.72 Aligned_cols=214 Identities=10% Similarity=0.042 Sum_probs=135.4
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCe-EEEEECC---CcEEEEECCCCeeeEEecCCCccEEEEEeeC--
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTH-LAVGTSH---GKVQIWDASRCKRVRTMEGHRLRVGALAWSS-- 260 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~-la~g~~d---g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~-- 260 (415)
..|++-|........+.. + +....-.|+|||+. ++..+.. ..|.++|+.+++...... ..+......|++
T Consensus 169 ~~l~~~d~dg~~~~~~~~-~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVK-G--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCceeEEcc-C--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence 367777776555433332 2 37888999999985 6654444 458889998876544333 455566677873
Q ss_pred C-EEEEEeCC--CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC-C--cEEEEECCCCceeEEeccCCC
Q 014934 261 S-LLSSGSRD--KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N--RLFVWNQHSTQPVLKYCEHTA 334 (415)
Q Consensus 261 ~-~l~sgs~d--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d-g--~I~iwd~~~~~~~~~~~~h~~ 334 (415)
+ ++++.+.+ ..|+++|+..+. ...+..+........|+|||+.|+..++. + .|++.|+.+++....... ..
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~ 321 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK 321 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC
Confidence 3 44444444 468888987765 34444444334456899999988776542 2 689999988765332211 11
Q ss_pred cEEEEEEcCCCCcEEEEEcCCC-----C-CeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecC-CCcEEEEE
Q 014934 335 AVKAIAWSPHLHGLLASGGGTA-----D-RCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS-QNQIIVWR 407 (415)
Q Consensus 335 ~V~~l~~sp~~~~llasggg~~-----d-~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~-dg~I~vw~ 407 (415)
....|+|+|+.++.+..... . ..|.+.|+.++.... +..........|+|||+.|+.+.... ...|.+.+
T Consensus 322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 12489999998877764211 1 478889998887533 33233344689999999888764322 22466666
Q ss_pred CCC
Q 014934 408 YPT 410 (415)
Q Consensus 408 ~~s 410 (415)
+..
T Consensus 399 l~g 401 (419)
T PRK04043 399 LNY 401 (419)
T ss_pred cCC
Confidence 654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.6e-07 Score=89.38 Aligned_cols=191 Identities=8% Similarity=0.053 Sum_probs=120.6
Q ss_pred eeEeecCC-Cc-EEEE-Ec---CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC-C--CcEEEEECCCC
Q 014934 170 LNLVDWSS-HN-VLAV-GL---GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-H--GKVQIWDASRC 240 (415)
Q Consensus 170 i~~l~ws~-~~-~la~-~~---d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~-d--g~V~iwd~~~~ 240 (415)
.....|+| ++ +++. .. ...|+++|+.+++...+.. ..+.+....|+|||+.|+.... + ..|.++|+.++
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 44678999 54 4554 33 2479999999998877764 3456777889999987776533 3 45777788776
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEe-CCC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC---
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGS-RDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND--- 312 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d--- 312 (415)
+. +.+..+........|+ ++.|+-.+ ..+ .|++.|+..+.. ..+..... ....|+|||+.|+.....
T Consensus 268 ~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 268 TL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFHGK--NNSSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred cE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCccCCC--cCceECCCCCEEEEEEcCCCc
Confidence 53 3444344333445687 44444443 444 588888887652 22221111 124899999998876543
Q ss_pred ------CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc
Q 014934 313 ------NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (415)
Q Consensus 313 ------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~ 369 (415)
..|++.|+.++.. ..+... .......|+|+|+.++.+........|.+.++....
T Consensus 343 ~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 343 EFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred ccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 3688899988754 344333 233458999999977776532123347777775543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.2e-07 Score=87.73 Aligned_cols=237 Identities=15% Similarity=0.264 Sum_probs=152.0
Q ss_pred ceeEeecCC-CcEEEE-E-----------cCCeEEEEECCCCCeEEeEec--CCCCCeEEEEEcCCCCeEEEEECCCcEE
Q 014934 169 YLNLVDWSS-HNVLAV-G-----------LGNCVYLWNACSSKVTKLCDL--GIDDSVCSVGWANRNTHLAVGTSHGKVQ 233 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~-~-----------~d~~V~iwd~~~~~~~~~~~~--~~~~~V~~v~~sp~g~~la~g~~dg~V~ 233 (415)
++..++||| .++|++ + .+..+.|||+.+|...+.+.. +....-.-+.||.|++++|--..+ .|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEE
Confidence 366778888 555544 2 125799999999998887765 222223457899999999987775 699
Q ss_pred EEECCCCeeeEEecCCCccEEEEEeeC--CEEEEEeC--C---CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEE
Q 014934 234 IWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSR--D---KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306 (415)
Q Consensus 234 iwd~~~~~~~~~l~~h~~~V~~l~~~~--~~l~sgs~--d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 306 (415)
||+..+...+..-.-.-..|....|+| ++|+-=.. + ..+.+..+.++. .++...-|.-.=|.|-|-.+|.+|
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~-~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR-EIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc-eeeeccceeeeccEEEeccCCcEE
Confidence 999776443322222335577788885 33332211 1 124444444443 234434444455678888899998
Q ss_pred EEE----------eCCCcEEEEECCCCc-eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC-Cc---EE
Q 014934 307 ASG----------GNDNRLFVWNQHSTQ-PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-NT---HL 371 (415)
Q Consensus 307 asg----------~~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t-~~---~~ 371 (415)
+.- +.-..+-|+.++... ++..+ .-...|.+.+|-|.|..+.+..|.+...++.+|.+.+ .. ++
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 762 111235566665543 33333 4567889999999998777766655678899998873 32 23
Q ss_pred EEeeCCCCEEEEEECCCCCeEEEEE-ecCCCcEEEEECC
Q 014934 372 SCMDTGSQVCNLVWSKNVNELVSTH-GYSQNQIIVWRYP 409 (415)
Q Consensus 372 ~~~~~~~~V~~l~~s~~~~~l~s~~-g~~dg~I~vw~~~ 409 (415)
..++ ....+.+.|+|.|++++++. ++..|.+.++|..
T Consensus 488 k~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 488 KELD-KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred hhhc-ccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 3333 25567899999999988742 3457889999976
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5e-08 Score=97.10 Aligned_cols=226 Identities=15% Similarity=0.313 Sum_probs=161.8
Q ss_pred CCCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCC---------------eEEeEecCCCCCeEEEEEcCCCCeEEEE
Q 014934 164 LQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK---------------VTKLCDLGIDDSVCSVGWANRNTHLAVG 226 (415)
Q Consensus 164 l~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~---------------~~~~~~~~~~~~V~~v~~sp~g~~la~g 226 (415)
+.+...++|+.|+. .++||+| .||.+++..+.+.. ..+.++ +|.+.|.-+.|+.+.+.|-+.
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEecccccccccc
Confidence 34456789999999 7888888 57888888765421 112222 899999999999999999999
Q ss_pred ECCCcEEEEECCCCeeeEEec--CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC
Q 014934 227 TSHGKVQIWDASRCKRVRTME--GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD 302 (415)
Q Consensus 227 ~~dg~V~iwd~~~~~~~~~l~--~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 302 (415)
..+|.|.+|-+-.+.-...+. .....|.+|+|+ |..++..-.||.|.+=.+....-.-+.+++ .....+.|++|
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D 167 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSED 167 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeeccc
Confidence 999999999987775443332 345678999998 788888899999888777655421222222 23457889999
Q ss_pred CCEEEEEeCCCcEEEEECCCC-------ceeEEe----ccCCCcEEEEEEc--------CCCCcEEEEEcCCCCCeEEEE
Q 014934 303 NRELASGGNDNRLFVWNQHST-------QPVLKY----CEHTAAVKAIAWS--------PHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 303 g~~lasg~~dg~I~iwd~~~~-------~~~~~~----~~h~~~V~~l~~s--------p~~~~llasggg~~d~~I~iw 363 (415)
.+.++.+-.+|.+.+||.... .+.... ......|..+.|. |+.. .|+.+- ..|.+.+.
T Consensus 168 ~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy--~nGr~QiM 244 (1189)
T KOG2041|consen 168 LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCY--ANGRMQIM 244 (1189)
T ss_pred HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEE--cCceehhh
Confidence 999988888999999997532 111111 1122235566664 3555 445443 67888887
Q ss_pred ECCCCcEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 364 NTTTNTHLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 364 d~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
.-.+......++++-.+.++.|+++|..|+++
T Consensus 245 R~eND~~Pvv~dtgm~~vgakWnh~G~vLAvc 276 (1189)
T KOG2041|consen 245 RSENDPEPVVVDTGMKIVGAKWNHNGAVLAVC 276 (1189)
T ss_pred hhcCCCCCeEEecccEeecceecCCCcEEEEc
Confidence 66666656677888899999999999999986
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-06 Score=86.28 Aligned_cols=222 Identities=15% Similarity=0.084 Sum_probs=138.1
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEE
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALA 257 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~ 257 (415)
+.+++.+.++.|+-+|..+|+..-...+.. ....... .++..+++++.+|.|..+|..+++.+-.............
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDE-RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCC-CcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 344444567899999999999876655432 1111222 2567888899999999999999987765543222222223
Q ss_pred eeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCe-----EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccC
Q 014934 258 WSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV-----CGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH 332 (415)
Q Consensus 258 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h 332 (415)
..++.++.++.+|.|+.+|.++++. +-........+ .+... .+..++.+..++.+..+|+++++.+.+....
T Consensus 143 v~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 143 VANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred EECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence 3467888888999999999988873 33322211111 11112 2346778888999999999999877654311
Q ss_pred CC----c---EEEEEEcC--CCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcE
Q 014934 333 TA----A---VKAIAWSP--HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (415)
Q Consensus 333 ~~----~---V~~l~~sp--~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I 403 (415)
.. . +..+.-+| .+..+++++ .++.+..||..+|+.+........ .... ..+..+++ +..+|.|
T Consensus 220 ~~~g~~~~~~~~~~~~~p~~~~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~~~~-~~p~--~~~~~vyv--~~~~G~l 291 (377)
T TIGR03300 220 LPKGRTELERLVDVDGDPVVDGGQVYAVS---YQGRVAALDLRSGRVLWKRDASSY-QGPA--VDDNRLYV--TDADGVV 291 (377)
T ss_pred cCCCCCchhhhhccCCccEEECCEEEEEE---cCCEEEEEECCCCcEEEeeccCCc-cCce--EeCCEEEE--ECCCCeE
Confidence 00 0 00010011 133455544 589999999999998876653321 1122 24556666 4578899
Q ss_pred EEEECCCCcc
Q 014934 404 IVWRYPTMSK 413 (415)
Q Consensus 404 ~vw~~~s~~~ 413 (415)
..+|..+++.
T Consensus 292 ~~~d~~tG~~ 301 (377)
T TIGR03300 292 VALDRRSGSE 301 (377)
T ss_pred EEEECCCCcE
Confidence 9998877654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.9e-08 Score=99.10 Aligned_cols=181 Identities=17% Similarity=0.230 Sum_probs=142.2
Q ss_pred CCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEE
Q 014934 219 RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLK 298 (415)
Q Consensus 219 ~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 298 (415)
++..++.|+....+..+|+.+.+..+...-..+.|.-|..+++.+++|...|+|.+.|.++.+ .++++.+|.+.|..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISDFD 224 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCc-eeeeeeccccceeeee
Confidence 455677788888899999999888877766565699999999999999999999999999887 6899999999998655
Q ss_pred EeCCCCEEEEEeCC---------CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC--
Q 014934 299 WSYDNRELASGGND---------NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-- 367 (415)
Q Consensus 299 ~spdg~~lasg~~d---------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t-- 367 (415)
-.|++|+++|.. .-|+|||++..+.+.-+.-+.++ .-+.|+|.-...++..+ ..|...+-|..+
T Consensus 225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S--~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS--QSGQFQFVDTATLS 299 (1118)
T ss_pred --ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe--cccceeeccccccC
Confidence 469999998864 45899999988766555444433 55778887655555555 678888888432
Q ss_pred -C-cEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 368 -N-THLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 368 -~-~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
. ..+..+. .++.+..++++++++.|+. |..+|.|.+|.
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alaf--gd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAF--GDHEGHVNLWA 340 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEE--ecccCcEeeec
Confidence 2 1223333 5667999999999999999 88999999998
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-08 Score=94.10 Aligned_cols=167 Identities=19% Similarity=0.311 Sum_probs=122.2
Q ss_pred EEEcC--CCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCC----CccEE
Q 014934 214 VGWAN--RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQ----EDFVS 285 (415)
Q Consensus 214 v~~sp--~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~----~~~~~ 285 (415)
++|+- .|-++++|. +-.|-+-|++++-. ..|. ..+.|.++.|. +++++.|.++|.|..+|+|.+ ..+.+
T Consensus 217 CawSlni~gyhfs~G~-sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGL-SQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceeeecccc-cceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 36764 355655554 44688889887632 2333 56778888887 589999999999999999976 22333
Q ss_pred EeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCce---eEEeccCCCcEEEEEE--cCCCCcEEEEEcCCCCCe
Q 014934 286 KLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQP---VLKYCEHTAAVKAIAW--SPHLHGLLASGGGTADRC 359 (415)
Q Consensus 286 ~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~~~---~~~~~~h~~~V~~l~~--sp~~~~llasggg~~d~~ 359 (415)
.+ -|...|+++..-. ++++|.+.+.+|+|.+||++.-++ +.++++|...-.-+-+ .+.. .+++++| .|..
T Consensus 294 rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~G--dDcy 369 (425)
T KOG2695|consen 294 RL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVG--DDCY 369 (425)
T ss_pred EE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-ceEEEcc--CeeE
Confidence 33 4889999998876 788999999999999999987666 8999998754433332 3433 4666666 8999
Q ss_pred EEEEECCCCcEEEEeeCCC-----CEEEEEECC
Q 014934 360 IRFWNTTTNTHLSCMDTGS-----QVCNLVWSK 387 (415)
Q Consensus 360 I~iwd~~t~~~~~~~~~~~-----~V~~l~~s~ 387 (415)
.|||.+..|.++.++.... .+.+++|..
T Consensus 370 tRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 370 TRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred EEEEecccCceeeccCCCCccccccccceehhc
Confidence 9999999999999887433 344555543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.4e-07 Score=87.21 Aligned_cols=221 Identities=16% Similarity=0.057 Sum_probs=139.4
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccE----
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRV---- 253 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V---- 253 (415)
+.+++.+.++.|+.+|..+|++.-..... +.+.+.-.. .+..+++++.+|.|..||.++++.+-.+......+
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLS--SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccC--ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 44555557899999999999987655432 233221111 35567778889999999999998776655332211
Q ss_pred -EEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecccc---CC------e-EEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 254 -GALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK---SE------V-CGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 254 -~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~---~~------V-~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
......++.++.+..++.+..+|.+++......-.... .. + ....+ .+..+.+++.+|.++.||..+
T Consensus 183 ~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~t 260 (377)
T TIGR03300 183 SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRS 260 (377)
T ss_pred CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCC
Confidence 11222356788888999999999988763221111100 00 1 11111 355777888899999999999
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCC-CEEEEEECCCCCeEEEEEecCC
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGS-QVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~-~V~~l~~s~~~~~l~s~~g~~d 400 (415)
++.+..... . ....... .+..+++.. .++.|..+|..+|+.+.... ... ....... .+..|++ +..+
T Consensus 261 G~~~W~~~~-~-~~~~p~~--~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~--~~~~ 329 (377)
T TIGR03300 261 GRVLWKRDA-S-SYQGPAV--DDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVV--GDFE 329 (377)
T ss_pred CcEEEeecc-C-CccCceE--eCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEE--EeCC
Confidence 988776642 1 1122222 244455543 69999999999999876653 222 2222222 3567777 6789
Q ss_pred CcEEEEECCCCccc
Q 014934 401 NQIIVWRYPTMSKV 414 (415)
Q Consensus 401 g~I~vw~~~s~~~l 414 (415)
|.|+++|..+++.+
T Consensus 330 G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 330 GYLHWLSREDGSFV 343 (377)
T ss_pred CEEEEEECCCCCEE
Confidence 99999998887653
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.4e-08 Score=89.63 Aligned_cols=201 Identities=15% Similarity=0.288 Sum_probs=141.5
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe-----eeEEecCCC------------ccEEEEEee----CCEEE
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-----RVRTMEGHR------------LRVGALAWS----SSLLS 264 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~-----~~~~l~~h~------------~~V~~l~~~----~~~l~ 264 (415)
...+.|++|.|...|.+|++|...|.|.+|.-.... ....+++|. ..|..+.|. -..++
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 346789999999999999999999999999865432 223344453 468888887 24667
Q ss_pred EEeCCCcEEEEECCCCCc-----------------------------------------cEE-EeccccCCeEEEEEeCC
Q 014934 265 SGSRDKSILQRDIRAQED-----------------------------------------FVS-KLSGHKSEVCGLKWSYD 302 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~~-----------------------------------------~~~-~~~~h~~~V~~l~~spd 302 (415)
..+.|++|++|.+....- +.+ .-..|...|.++.++.|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 777999999999865410 000 11357777899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCce---eEEeccCC-----CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE---
Q 014934 303 NRELASGGNDNRLFVWNQHSTQP---VLKYCEHT-----AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL--- 371 (415)
Q Consensus 303 g~~lasg~~dg~I~iwd~~~~~~---~~~~~~h~-----~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~--- 371 (415)
...++++ .|-+|.+|++.-... +.-++.|. .-|++..|+|....++.-++ ..|.|++-|++...+.
T Consensus 184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs--SkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS--SKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec--CCCcEEehhhhhhhhccCc
Confidence 8888876 467899999864322 22233443 45788899998776666555 6899999999843211
Q ss_pred ---E--Ee---e------CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 372 ---S--CM---D------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 372 ---~--~~---~------~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
. .+ + .-+.|..+.|+++|+++++ - +-.+++|||+.--+
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls--R-dyltvkiwDvnm~k 312 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS--R-DYLTVKIWDVNMAK 312 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE--e-ccceEEEEeccccc
Confidence 1 01 1 1256888999999999998 3 45699999987543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-05 Score=74.86 Aligned_cols=237 Identities=13% Similarity=0.074 Sum_probs=152.1
Q ss_pred eeEeecCC-CcEEEEE-c---CCeEEEE--ECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEEC-CCcEEEEECCC-
Q 014934 170 LNLVDWSS-HNVLAVG-L---GNCVYLW--NACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASR- 239 (415)
Q Consensus 170 i~~l~ws~-~~~la~~-~---d~~V~iw--d~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~-dg~V~iwd~~~- 239 (415)
.+-|.|++ ++.|.++ . ++.|..| |-.+|++..+-.. ......+.|+++++|++|+++.. .|.|.++-++.
T Consensus 42 ptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d 121 (346)
T COG2706 42 PTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD 121 (346)
T ss_pred CceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccC
Confidence 34568888 4455555 2 3455554 4445776555443 22344589999999999999875 57899999865
Q ss_pred CeeeE--EecCCCcc----------EEEEEeeC--CEEEEEeC-CCcEEEEECCCCCcc---EEEeccccCCeEEEEEeC
Q 014934 240 CKRVR--TMEGHRLR----------VGALAWSS--SLLSSGSR-DKSILQRDIRAQEDF---VSKLSGHKSEVCGLKWSY 301 (415)
Q Consensus 240 ~~~~~--~l~~h~~~----------V~~l~~~~--~~l~sgs~-dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~sp 301 (415)
|.... .+..|.+. +....+.| ++|++.+- --.|.+|++..+.-. ...+ .....-..|.|+|
T Consensus 122 G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHp 200 (346)
T COG2706 122 GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHP 200 (346)
T ss_pred CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcC
Confidence 32211 12224444 66666663 56666642 235899999855411 1111 3345678899999
Q ss_pred CCCEEEEEe-CCCcEEEEECCCC-ceeEEecc---------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-c
Q 014934 302 DNRELASGG-NDNRLFVWNQHST-QPVLKYCE---------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-T 369 (415)
Q Consensus 302 dg~~lasg~-~dg~I~iwd~~~~-~~~~~~~~---------h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~ 369 (415)
++++....+ -+++|.+|..... ..+..++. -.....+|..+++|++|+++-= ....|.+|.+... .
T Consensus 201 n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR--g~dsI~~f~V~~~~g 278 (346)
T COG2706 201 NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR--GHDSIAVFSVDPDGG 278 (346)
T ss_pred CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC--CCCeEEEEEEcCCCC
Confidence 999977655 5889999998763 22222221 2345678999999998888764 3448888877542 2
Q ss_pred EEEEe---eCCCC-EEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 370 HLSCM---DTGSQ-VCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 370 ~~~~~---~~~~~-V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
.+..+ .++.+ -..+.|++.+++|++++- ....|.+|....
T Consensus 279 ~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q-~sd~i~vf~~d~ 322 (346)
T COG2706 279 KLELVGITPTEGQFPRDFNINPSGRFLIAANQ-KSDNITVFERDK 322 (346)
T ss_pred EEEEEEEeccCCcCCccceeCCCCCEEEEEcc-CCCcEEEEEEcC
Confidence 23322 24444 788999999999999854 445699988653
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=98.63 Aligned_cols=165 Identities=16% Similarity=0.237 Sum_probs=126.9
Q ss_pred eEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC------ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE------DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
+..+.+|+..|..++-- .+-+++++.|++|++|.++... .+..++..|+.+|..+.|-.+-++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 45577899998888653 5789999999999999987533 2456788999999999999998888876 788
Q ss_pred EEEEECCCCceeEEecc--CCCcEEEEEEcCC-CCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC------CCCEEEEEE
Q 014934 315 LFVWNQHSTQPVLKYCE--HTAAVKAIAWSPH-LHGLLASGGGTADRCIRFWNTTTNTHLSCMDT------GSQVCNLVW 385 (415)
Q Consensus 315 I~iwd~~~~~~~~~~~~--h~~~V~~l~~sp~-~~~llasggg~~d~~I~iwd~~t~~~~~~~~~------~~~V~~l~~ 385 (415)
|++||.--++++.++.. ..+++..+..-+. .+.++..+ .+...+|+++|.+.++...+++. ..-+.+++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAg-csaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAG-CSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeee-ccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999888877765432 2334444444444 33344443 24899999999999987776652 245788999
Q ss_pred CCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 386 SKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 386 s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
.+.|+++++ +-+.|+|.+.|..+++
T Consensus 885 a~~GN~lAa--~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 885 ADKGNKLAA--ALSNGCIAILDARNGK 909 (1034)
T ss_pred ccCcchhhH--HhcCCcEEEEecCCCc
Confidence 999999999 7889999999988876
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-06 Score=93.04 Aligned_cols=195 Identities=16% Similarity=0.241 Sum_probs=126.9
Q ss_pred CeEEEEEcCCCCeEEEEEC---C---CcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeC---CCcEEEEECC
Q 014934 210 SVCSVGWANRNTHLAVGTS---H---GKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSR---DKSILQRDIR 278 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~~---d---g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~---dg~I~iwd~~ 278 (415)
.-..|+|-.||.++|+.+. . ..++||+-+ |....+-+.-.+--.+++|. |+++++..+ ...|.+|.-.
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence 4567899999999999875 3 368999965 65555444444455678997 577777654 2346666543
Q ss_pred CCCccEEEec--cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec---cCCCcEEEEEEcCCCCcEEEEEc
Q 014934 279 AQEDFVSKLS--GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC---EHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 279 ~~~~~~~~~~--~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~llasgg 353 (415)
.-.+-...+. .....|..|.|++|+..||..-.|. |.+|-..+..-..+.+ .....+..+.|+|.....|....
T Consensus 290 GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t 368 (928)
T PF04762_consen 290 GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLT 368 (928)
T ss_pred CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEe
Confidence 3222112222 3456799999999999999987665 9999998875433322 22334556999998765444443
Q ss_pred CCCCCeEEEEEC----CCC----------------cE----------------EEEeeCCCCEEEEEECCCCCeEEEEEe
Q 014934 354 GTADRCIRFWNT----TTN----------------TH----------------LSCMDTGSQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 354 g~~d~~I~iwd~----~t~----------------~~----------------~~~~~~~~~V~~l~~s~~~~~l~s~~g 397 (415)
.++.+..++. ..+ .. ...+...+.|..++|++++..+++ -
T Consensus 369 --~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av--l 444 (928)
T PF04762_consen 369 --SNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV--L 444 (928)
T ss_pred --cCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE--E
Confidence 3344443332 211 11 122334578999999999987777 4
Q ss_pred cCCCcEEEEECCC
Q 014934 398 YSQNQIIVWRYPT 410 (415)
Q Consensus 398 ~~dg~I~vw~~~s 410 (415)
..||.|.+|..+.
T Consensus 445 ~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 445 TSDGSLSIYEWDL 457 (928)
T ss_pred ECCCCEEEEEecC
Confidence 5799999998654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-05 Score=74.09 Aligned_cols=215 Identities=13% Similarity=0.125 Sum_probs=147.7
Q ss_pred eecCC--CcEEEEEc--CCeEEEEECCCCCeEEeEecCCCCC-eEEEEEcCCCCeEEEEE-----CCCcEEEEECC-CCe
Q 014934 173 VDWSS--HNVLAVGL--GNCVYLWNACSSKVTKLCDLGIDDS-VCSVGWANRNTHLAVGT-----SHGKVQIWDAS-RCK 241 (415)
Q Consensus 173 l~ws~--~~~la~~~--d~~V~iwd~~~~~~~~~~~~~~~~~-V~~v~~sp~g~~la~g~-----~dg~V~iwd~~-~~~ 241 (415)
++.+| ...++++- +....+||..+++....+....... --.-.|++||++|.+.- ..|.|-|||.. +.+
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 45566 56777774 5679999999999887775322221 22467999999998863 35889999998 667
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEE------------------eCCCcEEEEECCCCCccEEE--e--ccccCCeEEE
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSG------------------SRDKSILQRDIRAQEDFVSK--L--SGHKSEVCGL 297 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sg------------------s~dg~I~iwd~~~~~~~~~~--~--~~h~~~V~~l 297 (415)
.+..+..|.-.-..+.+. +..|+++ ..+-.+...|.++++ .+.. + .-|...|..|
T Consensus 90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~-ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA-LLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc-eeeeeecCccccccceeeE
Confidence 788887766555566665 3355554 223345666666665 3333 3 3477789999
Q ss_pred EEeCCCCEEEEEeCCC-------cEEEEECCCCceeEEec-------cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 298 KWSYDNRELASGGNDN-------RLFVWNQHSTQPVLKYC-------EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 298 ~~spdg~~lasg~~dg-------~I~iwd~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
++.++|..++..-..| .|.+++... .+..+. .-...+-+|++++++..+.+|+- .-+++.+|
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP--rGg~~~~~ 244 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP--RGGRVAVW 244 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC--CCCEEEEE
Confidence 9999997766654443 244444332 222222 23467899999999987777775 78999999
Q ss_pred ECCCCcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 364 NTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 364 d~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
|..+++.+... .-..+|.++-..++ ++++
T Consensus 245 d~~tg~~~~~~-~l~D~cGva~~~~~-f~~s 273 (305)
T PF07433_consen 245 DAATGRLLGSV-PLPDACGVAPTDDG-FLVS 273 (305)
T ss_pred ECCCCCEeecc-ccCceeeeeecCCc-eEEe
Confidence 99999988665 34568889988888 5555
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.4e-06 Score=93.88 Aligned_cols=197 Identities=11% Similarity=0.110 Sum_probs=130.5
Q ss_pred eeEeecCC-CcEEEEE--cCCeEEEEECCCCCeEEeEecCC---------------CCCeEEEEEcC-CCCeEEEEECCC
Q 014934 170 LNLVDWSS-HNVLAVG--LGNCVYLWNACSSKVTKLCDLGI---------------DDSVCSVGWAN-RNTHLAVGTSHG 230 (415)
Q Consensus 170 i~~l~ws~-~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~---------------~~~V~~v~~sp-~g~~la~g~~dg 230 (415)
...+++++ ++.|.++ ..+.|+++|..++.+..+...+. -.....|+++| ++..+++...++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 35677776 5655555 34679999988776544432110 11346899999 556666667788
Q ss_pred cEEEEECCCCeeeEEecC---------C------CccEEEEEeeC--C-EEEEEeCCCcEEEEECCCCCccEEE------
Q 014934 231 KVQIWDASRCKRVRTMEG---------H------RLRVGALAWSS--S-LLSSGSRDKSILQRDIRAQEDFVSK------ 286 (415)
Q Consensus 231 ~V~iwd~~~~~~~~~l~~---------h------~~~V~~l~~~~--~-~l~sgs~dg~I~iwd~~~~~~~~~~------ 286 (415)
.|++||..++... .+.+ + -.....|++++ + ++++-+.++.|++||+.++......
T Consensus 706 ~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 706 QIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred eEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 9999998776532 2211 1 12345688873 4 5566667799999999865421110
Q ss_pred ------ec--------cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec-------------cCCCcEEEE
Q 014934 287 ------LS--------GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-------------EHTAAVKAI 339 (415)
Q Consensus 287 ------~~--------~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~-------------~h~~~V~~l 339 (415)
+- ..-....+++++++|+++++-..+++|++||..++....... +.-.....|
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GI 864 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGL 864 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEE
Confidence 00 001134689999999999998999999999998775543221 111246789
Q ss_pred EEcCCCCcEEEEEcCCCCCeEEEEECCCCcE
Q 014934 340 AWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370 (415)
Q Consensus 340 ~~sp~~~~llasggg~~d~~I~iwd~~t~~~ 370 (415)
+++++|+ ++++.. .++.|++||+.+++.
T Consensus 865 avd~dG~-lyVaDt--~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 865 ALGENGR-LFVADT--NNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEeCCCC-EEEEEC--CCCEEEEEECCCCcc
Confidence 9999997 777765 789999999998865
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8e-08 Score=90.04 Aligned_cols=159 Identities=21% Similarity=0.215 Sum_probs=110.2
Q ss_pred eeEeecCC-CcEEEEEcC-CeEEEEECCCCCe-EEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC---CCCee
Q 014934 170 LNLVDWSS-HNVLAVGLG-NCVYLWNACSSKV-TKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA---SRCKR 242 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d-~~V~iwd~~~~~~-~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~---~~~~~ 242 (415)
...+..++ +.+||++.+ ...++++...... .++... .....-+++.|..+.....++..-|.+.-+|+ ..+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 44455566 788888854 4555555444321 222211 22344566666666666666666665555554 43333
Q ss_pred eEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
..+-||-..+.+++|+ +.+++++.+|..|++-.............||+.-|..++.-+ +..|++||.|++|++||+
T Consensus 145 -~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 145 -EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred -chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEec
Confidence 3455799999999998 579999999999999887665533445668999999999875 556999999999999999
Q ss_pred CCCceeEEec
Q 014934 321 HSTQPVLKYC 330 (415)
Q Consensus 321 ~~~~~~~~~~ 330 (415)
++++.+.++.
T Consensus 223 ~sgk~L~t~d 232 (390)
T KOG3914|consen 223 TSGKLLDTCD 232 (390)
T ss_pred ccCCcccccc
Confidence 9999886653
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-09 Score=107.48 Aligned_cols=188 Identities=16% Similarity=0.231 Sum_probs=141.3
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEE-EeCCC-cEEEEECCCCC
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSS-GSRDK-SILQRDIRAQE 281 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~s-gs~dg-~I~iwd~~~~~ 281 (415)
.++...+|++|+.+.++|++|+..|.|++|++.+|.....+..|..+|+-+.-+ +..+++ .+... ...+|+...-.
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 567889999999999999999999999999999999999999999999999877 444444 43333 57789987654
Q ss_pred ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec-c---CCCcEEEEEEcCCCCcEEEEEcCCCC
Q 014934 282 DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-E---HTAAVKAIAWSPHLHGLLASGGGTAD 357 (415)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~-~---h~~~V~~l~~sp~~~~llasggg~~d 357 (415)
...+.+. +-.++.|+..-..-+.|..-....|||+.++.++.++- + .+..-+...|+|+.. |+. .|
T Consensus 1179 ~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl-----nd 1248 (1516)
T KOG1832|consen 1179 GPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL-----ND 1248 (1516)
T ss_pred Ccccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eEe-----eC
Confidence 4455544 45678898765555666666779999999998877742 1 222336788999987 665 46
Q ss_pred CeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 358 RCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 358 ~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
| .+||++..+.++.++.-+.-..=.|+|+|.+++. .+ .|||+.+.+
T Consensus 1249 G--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVII--NS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1249 G--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVII--NS-----EIWDMRTFK 1294 (1516)
T ss_pred c--eeeeeccHHHHhhhhhheecccccccCCCceEEe--ec-----hhhhhHHHH
Confidence 6 4899998887777764333334579999999988 33 389887754
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-05 Score=77.58 Aligned_cols=217 Identities=11% Similarity=0.038 Sum_probs=127.6
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC----------CCcEEEEECCCCeeeEEecCCCc-----
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS----------HGKVQIWDASRCKRVRTMEGHRL----- 251 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~----------dg~V~iwd~~~~~~~~~l~~h~~----- 251 (415)
+.|++.|..+.++...+..+.... .+ ++|||+.|.++.. +..|.+||..+.+.+..+.-...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 799999999999988887654333 34 9999998888766 67899999999999988763221
Q ss_pred --cEEEEEee--CCEEEEEe-C-CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC-Cc
Q 014934 252 --RVGALAWS--SSLLSSGS-R-DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS-TQ 324 (415)
Q Consensus 252 --~V~~l~~~--~~~l~sgs-~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~-~~ 324 (415)
....++++ +++|++.. . +..|.+.|+.+++ .+..+... ....-...+++..+ +-+.||......+.+ ++
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k-vv~ei~vp-~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA-FVRMMDVP-DCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc-EEEEEeCC-CCcEEEEecCCccE--EEeecCceEEEEecCCCc
Confidence 11234444 67777665 3 6889999999887 45544431 11111222222221 222344433332221 11
Q ss_pred ee-E---EeccCCCcE-EEEEEcC-CCCcEEEEEcCCCCCeEEEEECCCC-----cEEEEeeC--------CCCEEEEEE
Q 014934 325 PV-L---KYCEHTAAV-KAIAWSP-HLHGLLASGGGTADRCIRFWNTTTN-----THLSCMDT--------GSQVCNLVW 385 (415)
Q Consensus 325 ~~-~---~~~~h~~~V-~~l~~sp-~~~~llasggg~~d~~I~iwd~~t~-----~~~~~~~~--------~~~V~~l~~ 385 (415)
.. . .+..-...+ ..-.|.+ ++..++++. .|.|.+.|+... +.+..+.. .....-+++
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~----eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY----TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred eEEeeeeeecCCccccccCCceEcCCCcEEEEec----CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 11 0 111100000 0003455 777676764 499999996443 33333211 122334999
Q ss_pred CCCCCeEEE-EEec-------CCCcEEEEECCCCccc
Q 014934 386 SKNVNELVS-THGY-------SQNQIIVWRYPTMSKV 414 (415)
Q Consensus 386 s~~~~~l~s-~~g~-------~dg~I~vw~~~s~~~l 414 (415)
+++++.+.+ .|+. ..+.|.++|..+.+.+
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi 292 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL 292 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE
Confidence 999999888 4432 2258999999887653
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-07 Score=95.26 Aligned_cols=183 Identities=16% Similarity=0.201 Sum_probs=141.4
Q ss_pred cCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEE
Q 014934 175 WSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVG 254 (415)
Q Consensus 175 ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~ 254 (415)
-++..++.+|....+..+|..+.+..+...... ..|+-++ .+++.+.+|...|+|.+-|..+.+.++++..|++.|.
T Consensus 145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a-~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 145 MGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA-SGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred cCCcceeecchhhheeeeecccceeeeeeeccC-CceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 366788888888899999999998888776543 2355554 4688999999999999999999999999999999999
Q ss_pred EEEeeCCEEEEEeC---------CCcEEEEECCCCCccEEEeccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEE---CC
Q 014934 255 ALAWSSSLLSSGSR---------DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWN---QH 321 (415)
Q Consensus 255 ~l~~~~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~lasg~~dg~I~iwd---~~ 321 (415)
++...++.|++++. |..|++||+|.... +..+.-+.++ .-+.|+|. ...+|+++..|...+-| +.
T Consensus 222 DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 222 DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eeeccCCeEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccC
Confidence 99999999999975 55689999998762 3333333332 34677774 35688889999999999 33
Q ss_pred CC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 322 ST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 322 ~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
+. ..+..+..-...+.++++++.+. .+|.|. .+|.|.+|--
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd--~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGD-ALAFGD--HEGHVNLWAD 341 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCc-eEEEec--ccCcEeeecC
Confidence 33 22334444555699999999987 777766 8999999973
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-06 Score=84.52 Aligned_cols=212 Identities=13% Similarity=0.184 Sum_probs=139.3
Q ss_pred eeEeecCCC---cEEEEE---cC---CeEEEEECCCCCeEEeEec--CCCCCeEEEEEcCCCC-eEEEEEC--C------
Q 014934 170 LNLVDWSSH---NVLAVG---LG---NCVYLWNACSSKVTKLCDL--GIDDSVCSVGWANRNT-HLAVGTS--H------ 229 (415)
Q Consensus 170 i~~l~ws~~---~~la~~---~d---~~V~iwd~~~~~~~~~~~~--~~~~~V~~v~~sp~g~-~la~g~~--d------ 229 (415)
++.+..||+ ..||+= .+ ..|+||...-......... -....=..+.|.+.|. +|+.++. |
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SY 247 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASY 247 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccc
Confidence 667777774 455553 23 4699998763322222110 0012234567888776 3333222 2
Q ss_pred ---CcEEEEECCCCeeeEEecCCCccEEEEEeeC--CE--EEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC
Q 014934 230 ---GKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SL--LSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD 302 (415)
Q Consensus 230 ---g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~~--l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 302 (415)
.++++.+++...+...+. -.++|.++.|++ .. ++-|-.=-.+.++|++..- +..+ ..++-+++-|+|.
T Consensus 248 YGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--v~df--~egpRN~~~fnp~ 322 (566)
T KOG2315|consen 248 YGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--VFDF--PEGPRNTAFFNPH 322 (566)
T ss_pred cccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE--eEeC--CCCCccceEECCC
Confidence 358888887444444444 578999999994 33 3345566789999998653 3333 4567888999999
Q ss_pred CCEEEEEeCC---CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcC---CCCCeEEEEECCCCcEEEEeeC
Q 014934 303 NRELASGGND---NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGG---TADRCIRFWNTTTNTHLSCMDT 376 (415)
Q Consensus 303 g~~lasg~~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg---~~d~~I~iwd~~t~~~~~~~~~ 376 (415)
|++|+.+|-+ |.|-|||+.+.+.+.++.... -+-+.|+|+|++++.+... ..|+.++||+.. |..+.....
T Consensus 323 g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f 399 (566)
T KOG2315|consen 323 GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMF 399 (566)
T ss_pred CCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehhhh
Confidence 9999887754 689999999988888876543 3558999999977765531 138889999974 666666555
Q ss_pred CCCEEEEEECCCC
Q 014934 377 GSQVCNLVWSKNV 389 (415)
Q Consensus 377 ~~~V~~l~~s~~~ 389 (415)
.+....+.|-|-.
T Consensus 400 ~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 400 KSELLQVEWRPFN 412 (566)
T ss_pred hHhHhheeeeecC
Confidence 5567778887643
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-06 Score=76.80 Aligned_cols=186 Identities=12% Similarity=0.040 Sum_probs=126.0
Q ss_pred CCCeEEEEECCCcEEEEECCCCee-eEEecCCCccEEEE---EeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccC--
Q 014934 219 RNTHLAVGTSHGKVQIWDASRCKR-VRTMEGHRLRVGAL---AWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKS-- 292 (415)
Q Consensus 219 ~g~~la~g~~dg~V~iwd~~~~~~-~~~l~~h~~~V~~l---~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-- 292 (415)
...+||.|+..|...+|...+.+. ......|...|+-+ +-+.-.+..++.|.++++.++..+.. ....|..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~---~~~~h~~~~ 159 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN---KFAVHNQNL 159 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc---cceeecccc
Confidence 456899999999999999986542 33333343333222 22234577788999999988876542 1222333
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeEE--eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc
Q 014934 293 EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-PVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (415)
Q Consensus 293 ~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~-~~~~--~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~ 369 (415)
.+.++.+++|++++++.+....|..|.+.... .+.. .......-.+..|+.... .+|++. .||++.|||++...
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~--Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVF--QDGTCAIYDVRNMA 236 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEe--cCCcEEEEEecccc
Confidence 38899999999999999999999999987542 2222 223344556788888765 777776 89999999998754
Q ss_pred EEE-Ee-----eCCCCEEEEEECCCCC--eEEEEEecCCCcEEEEECCCCc
Q 014934 370 HLS-CM-----DTGSQVCNLVWSKNVN--ELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 370 ~~~-~~-----~~~~~V~~l~~s~~~~--~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
... .+ .+.+.+..+.|++.|. .|+.+ -.-+.+.|-|+.++.
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s--Ehfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS--EHFSRVHVVDTRNYV 285 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcceEEEEe--cCcceEEEEEcccCc
Confidence 322 22 2667899999998653 33332 234578888887764
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-08 Score=96.35 Aligned_cols=172 Identities=15% Similarity=0.224 Sum_probs=123.2
Q ss_pred EEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC-------CeeeEEecCCCccEEEEEeeCCEEEEEeCCCc
Q 014934 200 TKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-------CKRVRTMEGHRLRVGALAWSSSLLSSGSRDKS 271 (415)
Q Consensus 200 ~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~-------~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~ 271 (415)
++++.+ +|...|..++--.+.+-+++++.|.+|++|.++. ..+.-++..|..+|.++.|-.+.-..++.||.
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~g 805 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGG 805 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCc
Confidence 334433 8888888888777788899999999999999853 23666788999999999997555455667999
Q ss_pred EEEEECCCCCccEEEec----cccCCeEEEEEeCCCCEEEE-EeCCCcEEEEECCCCceeEEec-----cCCCcEEEEEE
Q 014934 272 ILQRDIRAQEDFVSKLS----GHKSEVCGLKWSYDNRELAS-GGNDNRLFVWNQHSTQPVLKYC-----EHTAAVKAIAW 341 (415)
Q Consensus 272 I~iwd~~~~~~~~~~~~----~h~~~V~~l~~spdg~~las-g~~dg~I~iwd~~~~~~~~~~~-----~h~~~V~~l~~ 341 (415)
|.+||.--+....+... +-.+.|.++. +-+..+++. ++...+|+++|.+.+.....++ +.++-+.+++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999765542211111 1122333332 113444444 4678899999999887665554 34567899999
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
.+.|+++.+.- ..|+|.+.|.++|+.+....
T Consensus 885 a~~GN~lAa~L---SnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 885 ADKGNKLAAAL---SNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred ccCcchhhHHh---cCCcEEEEecCCCceeccCC
Confidence 99998766644 58999999999999887654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.1e-08 Score=91.04 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=124.6
Q ss_pred ecCC---CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC-----eeeEE
Q 014934 174 DWSS---HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC-----KRVRT 245 (415)
Q Consensus 174 ~ws~---~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~-----~~~~~ 245 (415)
+|+- +.-+++|.+..|-+-|.++|....+. ..+.|.++.|...++++..|+.+|.|..+|++.. .+...
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qsf~---sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQSFQ---SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccccc---cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 5664 23367788889999999998654333 4678999999999999999999999999999754 34444
Q ss_pred ecCCCccEEEEE---eeCCEEEEEeCCCcEEEEECCCCCc--cEEEeccccCCeEEE--EEeCCCCEEEEEeCCCcEEEE
Q 014934 246 MEGHRLRVGALA---WSSSLLSSGSRDKSILQRDIRAQED--FVSKLSGHKSEVCGL--KWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 246 l~~h~~~V~~l~---~~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l--~~spdg~~lasg~~dg~I~iw 318 (415)
+. |...|+++. |+..+|.+.+.+|+|.+||+|.-+. -+..+.+|-..-.-+ -..+....++++|.|-..+||
T Consensus 295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 44 888888875 4578999999999999999997552 267788885543333 345677788899999999999
Q ss_pred ECCCCceeEEeccCCC----cEEEEEEc
Q 014934 319 NQHSTQPVLKYCEHTA----AVKAIAWS 342 (415)
Q Consensus 319 d~~~~~~~~~~~~h~~----~V~~l~~s 342 (415)
.++.+..+.++.-... .+..++|.
T Consensus 374 sl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 374 SLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ecccCceeeccCCCCccccccccceehh
Confidence 9999998887753322 34455554
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-07 Score=83.04 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=91.8
Q ss_pred cEEEEEcCCeEEEEECCCCC-eEEeEecCCCCCeEEEEEcCCCCeEEEEE-----CCCcEEEEECCCCeeeEEecCCCcc
Q 014934 179 NVLAVGLGNCVYLWNACSSK-VTKLCDLGIDDSVCSVGWANRNTHLAVGT-----SHGKVQIWDASRCKRVRTMEGHRLR 252 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~-~~~~~~~~~~~~V~~v~~sp~g~~la~g~-----~dg~V~iwd~~~~~~~~~l~~h~~~ 252 (415)
.+...+.|+.+.+.+.+.-. +.......|. .-.+.+....++.+.++. .-+..++|+++..+....-......
T Consensus 103 ~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~ 181 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDKDLALMSRIPSIHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDA 181 (319)
T ss_pred ceEecCCCceEEEEechHHHhhhhhcccccc-cccccceeecccEEecCCcceEeeccceeeeccccccccccccccccc
Confidence 33344468888888865411 1111111111 112222333444444432 2234555665433222111112234
Q ss_pred EEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCC
Q 014934 253 VGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 253 V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~ 322 (415)
|.+++-+| +++++|+.||.+-+||.|....+...+..|+.+|..+-|+| ++..|+++++||.+..||..+
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 88888874 78999999999999999998877888899999999999998 778999999999999999865
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.7e-06 Score=90.96 Aligned_cols=232 Identities=14% Similarity=0.217 Sum_probs=140.1
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEE----ECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLW----NACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iw----d~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.|..+.+-+ ..++++..+|.|.+. +..+..+..+-. -...|.+++||||+..||..+.+|+|.+.. .+...
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~--vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~ 153 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS--VDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDP 153 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE--EcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceE
Confidence 466666666 345555568888888 655555443332 257999999999999999999999998875 45555
Q ss_pred eEEecCCCc-----cEEEEEee-CCEEEEEeCCCcEE--EEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC---
Q 014934 243 VRTMEGHRL-----RVGALAWS-SSLLSSGSRDKSIL--QRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN--- 311 (415)
Q Consensus 243 ~~~l~~h~~-----~V~~l~~~-~~~l~sgs~dg~I~--iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~--- 311 (415)
+....-+.. .--.+-|- ...=+=|+.-+... .-|....+.-...+. +...-..|+|-.||.+||+.+-
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence 555443321 22234443 11111121111100 111111100011222 4445667999999999998764
Q ss_pred C---CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCC-CCCeEEEEECCCCcEEEEee-----CCCCEEE
Q 014934 312 D---NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGT-ADRCIRFWNTTTNTHLSCMD-----TGSQVCN 382 (415)
Q Consensus 312 d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~-~d~~I~iwd~~t~~~~~~~~-----~~~~V~~ 382 (415)
. ..|+||+-+ |.....-+.-.+--.+++|.|.|. ++|+.... ....|.+|. ++|..-..+. ....|..
T Consensus 233 ~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 233 TGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence 3 479999965 654444433333345789999997 77766421 234566666 4454444443 2457999
Q ss_pred EEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 383 LVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 383 l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+.|++++..|+.. ..| .|.+|-..+
T Consensus 310 l~Wn~ds~iLAv~--~~~-~vqLWt~~N 334 (928)
T PF04762_consen 310 LAWNSDSEILAVW--LED-RVQLWTRSN 334 (928)
T ss_pred EEECCCCCEEEEE--ecC-CceEEEeeC
Confidence 9999999999984 344 599997654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.7e-06 Score=79.83 Aligned_cols=234 Identities=15% Similarity=0.214 Sum_probs=155.8
Q ss_pred EeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC-----CcEEEEECCCCeeeEE
Q 014934 172 LVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCKRVRT 245 (415)
Q Consensus 172 ~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d-----g~V~iwd~~~~~~~~~ 245 (415)
.+.||- +.++|.-..++|.||+..+-.+...-.+ .-..|....|+|.++.||.=+-. ..+.|-.+.+.+.+++
T Consensus 310 ~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ksl-ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSL-KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred eEEeccCCceeEEeccceEEEEecCceeeeccccc-CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence 568998 7888888889999998765322222211 24678999999999988874321 3477777877777777
Q ss_pred ecCCCccEEEEEee--CCEEEEE----------eCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC--
Q 014934 246 MEGHRLRVGALAWS--SSLLSSG----------SRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-- 311 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sg----------s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-- 311 (415)
..-|.-.=..|.|. +++|+.- +.-..+-|+.++...-++..+. -+..|-..+|-|.|+.+++-+.
T Consensus 389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~ 467 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNT 467 (698)
T ss_pred ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccc
Confidence 66555444455664 5666543 1122356677776664444433 4567889999999999887443
Q ss_pred -CCcEEEEECCC-C---ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE-eeCCCCEEEEEE
Q 014934 312 -DNRLFVWNQHS-T---QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC-MDTGSQVCNLVW 385 (415)
Q Consensus 312 -dg~I~iwd~~~-~---~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~-~~~~~~V~~l~~ 385 (415)
..++.+|-+++ . +.+..+. ....+.+.|+|.|+.+++.+-++..|.+.++|+.-..+... ...+...+.+.|
T Consensus 468 ~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veW 545 (698)
T KOG2314|consen 468 VKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEW 545 (698)
T ss_pred cccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceE
Confidence 34688888763 2 2334442 24568899999999777766555789999999985322211 123455788999
Q ss_pred CCCCCeEEEEEec----CCCcEEEEECC
Q 014934 386 SKNVNELVSTHGY----SQNQIIVWRYP 409 (415)
Q Consensus 386 s~~~~~l~s~~g~----~dg~I~vw~~~ 409 (415)
.|.|+++++++.. .|+--+||++.
T Consensus 546 DPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 546 DPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred CCCCCEEEEeeehhhhccccceEEEEee
Confidence 9999999985322 25566777765
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.1e-08 Score=100.66 Aligned_cols=207 Identities=15% Similarity=0.245 Sum_probs=148.0
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC--cEEEEECCC-Cee
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG--KVQIWDASR-CKR 242 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg--~V~iwd~~~-~~~ 242 (415)
...+|++|+. .+.|++| ..|.|+++++.+|....... .|...|+.|.-+.+|..+++.+... ...+|++.. +..
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~ 1180 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGP 1180 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-ccccccccccccCCcceeeeeccccCchHHHhccccccCc
Confidence 3578999998 7888888 47999999999998877765 8899999999999998777665433 478999854 445
Q ss_pred eEEecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEec---cccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 014934 243 VRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLS---GHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~spdg~~lasg~~dg~I~i 317 (415)
.+++.+ -.++.|+. ..-+.|..-....+||+.+...+...+. +....-++..|+|+..+++ +|| .+
T Consensus 1181 ~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vL 1251 (1516)
T KOG1832|consen 1181 RHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VL 1251 (1516)
T ss_pred cccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--ee
Confidence 555543 45677773 2233444445688999998874433232 2233346788999988775 466 47
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
||.+..+.+++|...+..+ .-.|+|+|..+++-. .|||++|-+.++.+..-.+ |.+.|+..|..+.+
T Consensus 1252 WDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS--------EIwD~RTF~lLh~VP~Ldq-c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1252 WDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS--------EIWDMRTFKLLHSVPSLDQ-CAVTFNSTGDVMYA 1318 (1516)
T ss_pred eeeccHHHHhhhhhheecc-cccccCCCceEEeec--------hhhhhHHHHHHhcCccccc-eEEEeccCccchhh
Confidence 9999998888886555222 346999998666632 4999999988877653333 66888888876654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.3e-07 Score=89.07 Aligned_cols=196 Identities=15% Similarity=0.243 Sum_probs=138.2
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC---------------eeeEEecCCCccEEEEEee--CCEEEEEeC
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---------------KRVRTMEGHRLRVGALAWS--SSLLSSGSR 268 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~---------------~~~~~l~~h~~~V~~l~~~--~~~l~sgs~ 268 (415)
.......|++|+....++|+|+.||.+++..+.+. ..-.++.||.+.|..+.|+ ...|.+...
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 45667899999999999999999999999987542 1224567999999999999 478999999
Q ss_pred CCcEEEEECCCCCccEE-EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCc
Q 014934 269 DKSILQRDIRAQEDFVS-KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHG 347 (415)
Q Consensus 269 dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 347 (415)
+|.|.+|-+-.+.-+.. .-...++.|.+++|+.||..++..-.||.|.|=.+...+ +.--+-...-...+.|++|.+.
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQ 170 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecccHHH
Confidence 99999999877652211 112345679999999999999999999998887765432 2211111122347899999886
Q ss_pred EEEEEcCCCCCeEEEEECCCCc-------EEEEee-----CCCCEEEEEEC--------CCCCeEEEEEecCCCcEEEEE
Q 014934 348 LLASGGGTADRCIRFWNTTTNT-------HLSCMD-----TGSQVCNLVWS--------KNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 348 llasggg~~d~~I~iwd~~t~~-------~~~~~~-----~~~~V~~l~~s--------~~~~~l~s~~g~~dg~I~vw~ 407 (415)
+|+.- ..|.+.++|....- +..... .+..|..+.|. |+...|++ .+.+|.+.|..
T Consensus 171 ~Lf~~---ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav--cy~nGr~QiMR 245 (1189)
T KOG2041|consen 171 ALFKK---ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV--CYANGRMQIMR 245 (1189)
T ss_pred HHhhh---cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE--EEcCceehhhh
Confidence 66633 68999999976421 111111 12335566664 46667777 56777766654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.6e-06 Score=86.44 Aligned_cols=178 Identities=15% Similarity=0.193 Sum_probs=127.1
Q ss_pred ceeEeecCCCcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 169 YLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
.+.|.+++ +.+++.| ..|.|++.+....- ...+ .|... ..+|.++++|+.||+|.|-.+.+.+....+.
T Consensus 41 ~is~~av~-~~~~~~GtH~g~v~~~~~~~~~-~~~~--~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 41 AISCCAVH-DKFFALGTHRGAVYLTTCQGNP-KTNF--DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred HHHHHHhh-cceeeeccccceEEEEecCCcc-cccc--ccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 35566665 4566666 57899999875543 2222 34333 6689999999999999999998887776665
Q ss_pred CCCccEEEEEeeC-------CEEEEEeCCCcEEEEECCCCCcc-EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 014934 248 GHRLRVGALAWSS-------SLLSSGSRDKSILQRDIRAQEDF-VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319 (415)
Q Consensus 248 ~h~~~V~~l~~~~-------~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd 319 (415)
...++.+++++| +.+++|+.-| +.++.-+-.... ...+....++|.+++|. |+++|-++.+| |+|||
T Consensus 111 -f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd 185 (846)
T KOG2066|consen 111 -FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYD 185 (846)
T ss_pred -cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEe
Confidence 456788999886 4799999999 777654322211 12355667899999996 88999998888 99999
Q ss_pred CCCCceeEEeccCCCcE------EEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 320 QHSTQPVLKYCEHTAAV------KAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 320 ~~~~~~~~~~~~h~~~V------~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
+.+++.+..+......+ ..+.|.+..+ | +.| ...+|+|..++
T Consensus 186 ~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-L-VIG---W~d~v~i~~I~ 233 (846)
T KOG2066|consen 186 TPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-L-VIG---WGDSVKICSIK 233 (846)
T ss_pred ccccceeeccCCCCCCCCcccCCCceEecCCCe-E-EEe---cCCeEEEEEEe
Confidence 99988877765433333 4578887753 4 444 45678888877
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-06 Score=82.23 Aligned_cols=217 Identities=16% Similarity=0.139 Sum_probs=139.3
Q ss_pred EEEEECCCCCeEEeEecCCCCCeEEEEEcCCCC-eEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee---CCEEE
Q 014934 189 VYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS---SSLLS 264 (415)
Q Consensus 189 V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~-~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~ 264 (415)
|++.+..+-+...++ ..+...|.+++|+|... ++..++.+..|.|.|+++...+..+..+ ..+++++|+ .+++.
T Consensus 175 v~~l~~~~fkssq~l-p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQIL-PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcc-cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeE
Confidence 666666555544433 26778899999999776 7888899999999999999999888877 789999998 47999
Q ss_pred EEeCCCcEEEEECCCCCccEEEecc--ccCCeEEEEE------eCCCCEEEEEeCCCcEEEEECCC--C--ceeEEeccC
Q 014934 265 SGSRDKSILQRDIRAQEDFVSKLSG--HKSEVCGLKW------SYDNRELASGGNDNRLFVWNQHS--T--QPVLKYCEH 332 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~------spdg~~lasg~~dg~I~iwd~~~--~--~~~~~~~~h 332 (415)
.|...|.|++||+|..+..+..+.+ ...+|..++. .+.|.+|+....+ +..|++.- + -++..+ +.
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel-e~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL-EP 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc-CC
Confidence 9999999999999988755444433 1234544433 3345555554443 45566432 2 222333 33
Q ss_pred CCcEEEEEEcCCCCcEEEEEcCCCC---CeEEE----EECCCCcEEEEee---CCCCE-----EEEEE-CCCCCeEEEEE
Q 014934 333 TAAVKAIAWSPHLHGLLASGGGTAD---RCIRF----WNTTTNTHLSCMD---TGSQV-----CNLVW-SKNVNELVSTH 396 (415)
Q Consensus 333 ~~~V~~l~~sp~~~~llasggg~~d---~~I~i----wd~~t~~~~~~~~---~~~~V-----~~l~~-s~~~~~l~s~~ 396 (415)
.+...++..++..+.+|++.- .+ -.+++ -|-.+|..+.... .++.- ....+ .++.++++. .
T Consensus 330 pG~cismqy~~~snh~l~tyR--s~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~-~ 406 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYR--SNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV-V 406 (463)
T ss_pred CcceeeeeecCccceEEEEec--CCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE-e
Confidence 556777788887777888762 11 11111 2333444443322 12221 12233 344455554 4
Q ss_pred ecCCCcEEEEECCCCcc
Q 014934 397 GYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 397 g~~dg~I~vw~~~s~~~ 413 (415)
|.+-+.+.+||..+++.
T Consensus 407 gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 407 GDSTNELILQDPHSFEV 423 (463)
T ss_pred cCCcceeEEeccchhhe
Confidence 77889999999988754
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-08 Score=99.35 Aligned_cols=199 Identities=21% Similarity=0.319 Sum_probs=137.7
Q ss_pred CCCCcceeEeecCC---CcEEEEE-cCCeEEEEECCCCCeE-EeEecCCCCCeEEEEEcC-CCCeEEEEEC----CCcEE
Q 014934 164 LQDDFYLNLVDWSS---HNVLAVG-LGNCVYLWNACSSKVT-KLCDLGIDDSVCSVGWAN-RNTHLAVGTS----HGKVQ 233 (415)
Q Consensus 164 l~~~~~i~~l~ws~---~~~la~~-~d~~V~iwd~~~~~~~-~~~~~~~~~~V~~v~~sp-~g~~la~g~~----dg~V~ 233 (415)
..+.-|+.|++|+- ..++++| .+|.|.+-......-. ..+..++...+++++|++ |.++||+|-. |..+.
T Consensus 53 ~sdtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 53 WSDTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred cccCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 34556888999886 2588888 4688888876554322 333346778999999998 6678888843 56799
Q ss_pred EEECCCC--eeeE--EecC-CCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCE
Q 014934 234 IWDASRC--KRVR--TMEG-HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRE 305 (415)
Q Consensus 234 iwd~~~~--~~~~--~l~~-h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 305 (415)
|||+.+. .+.. .|.+ ......+++|. ..++.+|...+.+.++|+|.... ....-....+.++..+| .+++
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~--~~~svnTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD--SVSSVNTKYVQGITVDPFSPNY 210 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh--hhhhhhhhhcccceecCCCCCc
Confidence 9999775 1111 1222 22345577886 46788888899999999995542 22222345677888888 7888
Q ss_pred EEEEeCCCcEEEEE-CCCC-ceeEEeccCC----CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 306 LASGGNDNRLFVWN-QHST-QPVLKYCEHT----AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 306 lasg~~dg~I~iwd-~~~~-~~~~~~~~h~----~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
+++-. ||.|-+|| .++- .++..+.... ..+..++|+|....++++... ..++|+.+|+.
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R-dS~tIrlydi~ 275 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR-DSITIRLYDIC 275 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc-CcceEEEeccc
Confidence 87765 99999999 3332 3333332222 248999999999889888852 56889999985
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.3e-05 Score=68.59 Aligned_cols=185 Identities=15% Similarity=0.094 Sum_probs=119.3
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe-cCC-----Cc
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM-EGH-----RL 251 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l-~~h-----~~ 251 (415)
+.+++...++.|+.||..+|+..-...+.. .+.... ...+..+++++.++.|..+|..+++.+-.. ... ..
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~--~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDLPG--PISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEECSS--CGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeeccc--ccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 455555688999999999999877776522 211111 235666777788899999999999887763 322 11
Q ss_pred cEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCC----------eEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 252 RVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSE----------VCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 252 ~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~----------V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
......+.++.++.+..++.|..+|++++.. +-........ +.+-....++ .+..++.++.+.-+|+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp --SEEEEETTEEEEEETCSEEEEEETTTTEE-EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT
T ss_pred cccCceEecCEEEEEeccCcEEEEecCCCcE-EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC
Confidence 2334455588999999999999999999874 3333332211 1222222344 67777777754444999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC 373 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~ 373 (415)
+++.+.+.. ...+..+ ....+..+++.. .++.|..||+.+|+.+..
T Consensus 192 tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~---~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 192 TGEKLWSKP--ISGIYSL-PSVDGGTLYVTS---SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTEEEEEEC--SS-ECEC-EECCCTEEEEEE---TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEec--CCCccCC-ceeeCCEEEEEe---CCCEEEEEECCCCCEEeE
Confidence 998765443 3333332 335555455544 689999999999987653
|
... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-07 Score=58.69 Aligned_cols=37 Identities=38% Similarity=0.713 Sum_probs=35.3
Q ss_pred cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 014934 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319 (415)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd 319 (415)
++..+.+|...|.+|+|+|++.+|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5778999999999999999999999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.1e-05 Score=70.55 Aligned_cols=181 Identities=17% Similarity=0.112 Sum_probs=123.8
Q ss_pred eeEeecC-CCcEEEEEcCCeEEEEECCCCCeEEeEecC----CCCCeEEEEEcCCCCeEEEEECC--------CcEEEEE
Q 014934 170 LNLVDWS-SHNVLAVGLGNCVYLWNACSSKVTKLCDLG----IDDSVCSVGWANRNTHLAVGTSH--------GKVQIWD 236 (415)
Q Consensus 170 i~~l~ws-~~~~la~~~d~~V~iwd~~~~~~~~~~~~~----~~~~V~~v~~sp~g~~la~g~~d--------g~V~iwd 236 (415)
.+.+.+. +++.|.++..+.+.++|..+++...+.... .....+.+++.++|++.++.... |.|..++
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~ 121 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRID 121 (246)
T ss_dssp EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEE
T ss_pred CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEEC
Confidence 4455555 555566665666777799999887777651 34568899999999977665543 5577777
Q ss_pred CCCCeeeEEecCCCccEEEEEeeC--CEE-EEEeCCCcEEEEECCCCCc-c--EEEe---ccccCCeEEEEEeCCCCEEE
Q 014934 237 ASRCKRVRTMEGHRLRVGALAWSS--SLL-SSGSRDKSILQRDIRAQED-F--VSKL---SGHKSEVCGLKWSYDNRELA 307 (415)
Q Consensus 237 ~~~~~~~~~l~~h~~~V~~l~~~~--~~l-~sgs~dg~I~iwd~~~~~~-~--~~~~---~~h~~~V~~l~~spdg~~la 307 (415)
.. ++...... .-...+.|+|++ +.| ++-+..+.|..+++..... . ...+ ....+...++++..+|++.+
T Consensus 122 ~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v 199 (246)
T PF08450_consen 122 PD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV 199 (246)
T ss_dssp TT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE
T ss_pred CC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE
Confidence 77 45433333 345678999993 455 4667888899999875432 1 1112 22223478999999999988
Q ss_pred EEeCCCcEEEEECCCCceeEEeccCCCcEEEEEE-cCCCCcEEEEEc
Q 014934 308 SGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW-SPHLHGLLASGG 353 (415)
Q Consensus 308 sg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~-sp~~~~llasgg 353 (415)
+....+.|.++|.. ++.+..+......+++++| -++.+.|+++.+
T Consensus 200 a~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 200 ADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 88889999999987 8888877766668999999 467677887753
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-05 Score=77.66 Aligned_cols=217 Identities=12% Similarity=0.088 Sum_probs=130.9
Q ss_pred cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC--CCCeEEEEECCCcEEEEECCCCeeeEEecCCC----c-
Q 014934 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR----L- 251 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~----~- 251 (415)
.+++...++.|+-+|..+|+..-..............-+| .+..+++++.+|.+..+|..+++.+-...... .
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~ 241 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE 241 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccc
Confidence 3444446789999999999987665432110000000112 23457778889999999999887654432110 0
Q ss_pred --cE----EEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q 014934 252 --RV----GALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP 325 (415)
Q Consensus 252 --~V----~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~ 325 (415)
.. ......++.++.++.+|.+..+|..+++..-..-.+ ....+. ..+..|..++.+|.|..+|..+++.
T Consensus 242 ~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 242 IDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG---SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred hhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC---CccCcE--EECCEEEEEcCCCeEEEEECCCCcE
Confidence 00 111223677888889999999999988732222111 111222 2466778888999999999999987
Q ss_pred eEEeccCCC-cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC-CCEEE-EEECCCCCeEEEEEecCCCc
Q 014934 326 VLKYCEHTA-AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQVCN-LVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 326 ~~~~~~h~~-~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-~~V~~-l~~s~~~~~l~s~~g~~dg~ 402 (415)
+.+...-.. ...+.... +..+++ ++ .+|.|.+.|..+|+.+...+.. ..+.+ ..+ .+..|++ ++.+|.
T Consensus 317 ~W~~~~~~~~~~~sp~v~--~g~l~v-~~--~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v--~t~~G~ 387 (394)
T PRK11138 317 LWSQSDLLHRLLTAPVLY--NGYLVV-GD--SEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLI--QARDGT 387 (394)
T ss_pred EEcccccCCCcccCCEEE--CCEEEE-Ee--CCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEE--EeCCce
Confidence 765432111 12222222 333554 33 6999999999999998877643 33332 222 2345666 568999
Q ss_pred EEEEECC
Q 014934 403 IIVWRYP 409 (415)
Q Consensus 403 I~vw~~~ 409 (415)
|+.++.+
T Consensus 388 l~~~~~~ 394 (394)
T PRK11138 388 VYAITRP 394 (394)
T ss_pred EEEEeCC
Confidence 9988764
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-05 Score=78.24 Aligned_cols=225 Identities=10% Similarity=0.003 Sum_probs=133.4
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEE------EEEcC--CCCeEEEEECCCcEEEEECCCCeeeEEecCC
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCS------VGWAN--RNTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~------v~~sp--~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h 249 (415)
+.+++.+.++.|+-+|..+|+..-...+.....+.. +.-.| ++..+++++.+|.+.-+|.++++.+-.....
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 149 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA 149 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence 445555567899999999998766655432111100 00011 4567788889999999999999877665533
Q ss_pred CccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCe-----EEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 250 RLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV-----CGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 250 ~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
..........+..++.+..++.+..+|..+++. +-........+ .+... .+..++.++.+|.+..+|..+++
T Consensus 150 ~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~ 226 (394)
T PRK11138 150 GEALSRPVVSDGLVLVHTSNGMLQALNESDGAV-KWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQ 226 (394)
T ss_pred CceecCCEEECCEEEEECCCCEEEEEEccCCCE-eeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCCh
Confidence 222222233467788888999999999998873 32222111000 11111 23456777889999999999998
Q ss_pred eeEEeccCCC-------cEEEEEEcC--CCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 325 PVLKYCEHTA-------AVKAIAWSP--HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 325 ~~~~~~~h~~-------~V~~l~~sp--~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
.+.+...... ....+.-+| .+..+++.+ .++.+..+|..+|+.+.....+... .+. ..+..++.
T Consensus 227 ~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~-~~~--~~~~~vy~- 299 (394)
T PRK11138 227 LIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA---YNGNLVALDLRSGQIVWKREYGSVN-DFA--VDGGRIYL- 299 (394)
T ss_pred hhheeccccCCCccchhcccccCCCcEEECCEEEEEE---cCCeEEEEECCCCCEEEeecCCCcc-CcE--EECCEEEE-
Confidence 7766532110 011111122 133455544 5899999999999987765533221 111 13444555
Q ss_pred EecCCCcEEEEECCCCcc
Q 014934 396 HGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 396 ~g~~dg~I~vw~~~s~~~ 413 (415)
+..+|.|..+|..+++.
T Consensus 300 -~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 300 -VDQNDRVYALDTRGGVE 316 (394)
T ss_pred -EcCCCeEEEEECCCCcE
Confidence 34677777777766543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.4e-07 Score=79.63 Aligned_cols=147 Identities=14% Similarity=0.238 Sum_probs=97.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-----CCcEEEEECCCCceeEEeccCCC
Q 014934 260 SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-----DNRLFVWNQHSTQPVLKYCEHTA 334 (415)
Q Consensus 260 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-----dg~I~iwd~~~~~~~~~~~~h~~ 334 (415)
++.++++..||.+.+.+.+.-....+.+..-...-.+.+....++.+.+++- -+..+.|+++..+.+..-.....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~ 180 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD 180 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc
Confidence 5689999999999999987633222222221112222333345555555331 12356666654432222112234
Q ss_pred cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe--eCCCCEEEEEECCC-CCeEEEEEecCCCcEEEEECCC
Q 014934 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVWSKN-VNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 335 ~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~--~~~~~V~~l~~s~~-~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+|.+++-+|.+.+++++|+ .||.+-+||.+.......+ .|+..+..+.|+|. +..|++ .++||.+..||-.+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt--~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft--~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGT--DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT--CSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEec--CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE--ecCCCcEEEEcCCC
Confidence 5999999999999999987 8999999999987544333 27889999999985 566777 57999999999763
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.5e-06 Score=86.15 Aligned_cols=152 Identities=18% Similarity=0.279 Sum_probs=119.9
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC--------------CEEEEEeCCCcEEE
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--------------SLLSSGSRDKSILQ 274 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--------------~~l~sgs~dg~I~i 274 (415)
..-.++.|+|.| +||.|+.. .|.+.|..+-+.+..++.|...|+.+.|.+ -+|+++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 446788999887 56766654 799999999999999999999999999972 15788888999999
Q ss_pred EECCCCCccEEEeccccCCeEEEEEeC---CC-CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEE
Q 014934 275 RDIRAQEDFVSKLSGHKSEVCGLKWSY---DN-RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLA 350 (415)
Q Consensus 275 wd~~~~~~~~~~~~~h~~~V~~l~~sp---dg-~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 350 (415)
||..... .+..+..|..++..++|-+ +. ..|+.-...+.|.+|+..+|+.+.++........++.+.|....-+.
T Consensus 94 ~d~~~~s-~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 94 VDFVLAS-VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEehhhh-hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 9999886 4667778888999999875 44 46777777889999999999999988776677788999997654333
Q ss_pred EEcCCCCCeEEEEEC
Q 014934 351 SGGGTADRCIRFWNT 365 (415)
Q Consensus 351 sggg~~d~~I~iwd~ 365 (415)
.-| ..|.+.+-+.
T Consensus 173 ~l~--s~g~vl~~~~ 185 (1062)
T KOG1912|consen 173 VLG--SKGFVLSCKD 185 (1062)
T ss_pred EEc--cCceEEEEec
Confidence 332 4666666654
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-06 Score=82.14 Aligned_cols=229 Identities=13% Similarity=0.064 Sum_probs=158.1
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEe--cCCCCCeEEEEEcCCCCeEEEEEC-CCcEEEEECCCCeeeEEecC--CCcc
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCD--LGIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRCKRVRTMEG--HRLR 252 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~--~~~~~~V~~v~~sp~g~~la~g~~-dg~V~iwd~~~~~~~~~l~~--h~~~ 252 (415)
.-++.++.||.++.|....-..+.... ..|-..|.+++.+.+|..+++++. |..++++|+++-..+..++. -.+.
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~ 100 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF 100 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence 445666689999999765423333322 156778999999999999999777 99999999987665543331 2222
Q ss_pred EEEEEeeC----CEEEEEeCCCcEEEEECCCCCc-cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC-----
Q 014934 253 VGALAWSS----SLLSSGSRDKSILQRDIRAQED-FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS----- 322 (415)
Q Consensus 253 V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~----- 322 (415)
+..+--.+ .+.++.-.++.|.++|-+.... ....-.-|.++|..+.+++.+..+++....|.|.-|....
T Consensus 101 a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 101 AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc
Confidence 22221113 2333445678999999887653 3344456899999999999999999999999999999873
Q ss_pred -CceeE---------EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC----------------
Q 014934 323 -TQPVL---------KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---------------- 376 (415)
Q Consensus 323 -~~~~~---------~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~---------------- 376 (415)
.+... .+........++.|+|++. -+++-+ .|..|+++++.+|+.++.++.
T Consensus 181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~--~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~ 257 (558)
T KOG0882|consen 181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLN--PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLM 257 (558)
T ss_pred cccccccccccchhhcccccccCccceEEccccC-cccccC--cccEEEEEEeccchhhhhhhccchhhhhccccccccc
Confidence 11111 1222345678899999998 455554 799999999999987665531
Q ss_pred -----------------C-CCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 377 -----------------G-SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 377 -----------------~-~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+ ..-+.+.|...|++|+. |.-- -|+|.++.+.+
T Consensus 258 ~VelgRRmaverelek~~~~~~~~~~fdes~~flly--~t~~-gikvin~~tn~ 308 (558)
T KOG0882|consen 258 HVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY--GTIL-GIKVINLDTNT 308 (558)
T ss_pred eeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe--ecce-eEEEEEeecCe
Confidence 1 12346889999999988 5433 47777776654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.3e-06 Score=83.73 Aligned_cols=180 Identities=17% Similarity=0.312 Sum_probs=131.4
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEe
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKL 287 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 287 (415)
.+.++|++++ +++|+.|+.+|.|.+++..-. . .+...|+.. .-.|.++++|+.||+|.|-.+-+... ...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~-~~~~ 109 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDE-ITQY 109 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc----ccCCceEEEecCCCcEEEeeccCCcc-ceeE
Confidence 4566777665 779999999999999997643 2 344445544 33489999999999999998877763 2222
Q ss_pred ccccCCeEEEEEeCC-----CCEEEEEeCCCcEEEEECC---CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCe
Q 014934 288 SGHKSEVCGLKWSYD-----NRELASGGNDNRLFVWNQH---STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC 359 (415)
Q Consensus 288 ~~h~~~V~~l~~spd-----g~~lasg~~dg~I~iwd~~---~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~ 359 (415)
....++.+++++|+ .+++++||.-| +.++.-+ ....+ .+..-.++|.++.|.-+ ++|=++ |--
T Consensus 110 -df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~---lIAWan---d~G 180 (846)
T KOG2066|consen 110 -DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGN---LIAWAN---DDG 180 (846)
T ss_pred -ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecCc---EEEEec---CCC
Confidence 34578999999997 57899999988 7777632 22222 45566789999999843 777664 777
Q ss_pred EEEEECCCCcEEEEeeCC-------CCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 360 IRFWNTTTNTHLSCMDTG-------SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 360 I~iwd~~t~~~~~~~~~~-------~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
|+|||+.+++.+..+... ..-+.+.|.++.+.+ . |..| +|+|..+.
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-I--GW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-I--GWGD-SVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-E--ecCC-eEEEEEEe
Confidence 999999999988887632 235678998887644 4 5444 78887776
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.7e-06 Score=73.93 Aligned_cols=233 Identities=12% Similarity=0.268 Sum_probs=148.9
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEEEEECCCCC-eEE--e--Ee-----------cCCCCCeEEEEEcCCC--CeEEEEEC
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSK-VTK--L--CD-----------LGIDDSVCSVGWANRN--THLAVGTS 228 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~-~~~--~--~~-----------~~~~~~V~~v~~sp~g--~~la~g~~ 228 (415)
.|+++.|.- +.+||+|. +|.|.++.-.... +.. + ++ +.-...|..+.|..++ ..++..+.
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN 107 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN 107 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence 578888888 78999995 6789988754432 100 0 11 0123568889998754 36666789
Q ss_pred CCcEEEEECCCC-------------------------------------eee-----EEe-cCCCccEEEEEeeC-CEEE
Q 014934 229 HGKVQIWDASRC-------------------------------------KRV-----RTM-EGHRLRVGALAWSS-SLLS 264 (415)
Q Consensus 229 dg~V~iwd~~~~-------------------------------------~~~-----~~l-~~h~~~V~~l~~~~-~~l~ 264 (415)
|.+|++|.+... +.+ +.+ ..|.--|.++.++. ...+
T Consensus 108 dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~ 187 (460)
T COG5170 108 DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETL 187 (460)
T ss_pred CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhee
Confidence 999999986321 000 011 24666677888873 3344
Q ss_pred EEeCCCcEEEEECCCCCccEE--Eecccc-----CCeEEEEEeCC-CCEEEEEeCCCcEEEEECCCCc------eeE---
Q 014934 265 SGSRDKSILQRDIRAQEDFVS--KLSGHK-----SEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQ------PVL--- 327 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~~~~~--~~~~h~-----~~V~~l~~spd-g~~lasg~~dg~I~iwd~~~~~------~~~--- 327 (415)
..+.|=.|.+|++.-...... .++.|. .-|++..|+|. .+.|.-.+..|.|++-|++... .+.
T Consensus 188 lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~ 267 (460)
T COG5170 188 LSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELT 267 (460)
T ss_pred eeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhc
Confidence 445677899999876554332 233443 34788899995 4566667888999999998431 111
Q ss_pred -------EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEEEEeeC-------------CCCE---EEE
Q 014934 328 -------KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMDT-------------GSQV---CNL 383 (415)
Q Consensus 328 -------~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~~~~~~-------------~~~V---~~l 383 (415)
-+.+-...|..+.|++.|+++++ - .=-++++||++.. .++.++.. ...| ..+
T Consensus 268 ~D~v~~~ff~eivsSISD~kFs~ngryIls-R---dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 268 IDGVDVDFFEEIVSSISDFKFSDNGRYILS-R---DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred cCcccchhHHHHhhhhcceEEcCCCcEEEE-e---ccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 12233456788999999985554 3 2578999999864 45665531 1223 357
Q ss_pred EECCCCCeEEEEEecCCCcEEEEE
Q 014934 384 VWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 384 ~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
.|+.+...+++ |+-.+..-+|-
T Consensus 344 sfSgd~~~v~s--gsy~NNfgiyp 365 (460)
T COG5170 344 SFSGDDKHVLS--GSYSNNFGIYP 365 (460)
T ss_pred EecCCcccccc--cccccceeeec
Confidence 88888888887 65566666654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.1e-05 Score=82.11 Aligned_cols=235 Identities=13% Similarity=0.214 Sum_probs=133.9
Q ss_pred ceeEeecCC-Cc-EEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~-~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.|..+.|.. .+ ++.+..+|.|.+-|..+......-. -...|.+++|+||++.++..+..+++.+-+ .+..++..-
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~--vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~ 146 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN--VDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEK 146 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeee--ccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcc
Confidence 466777766 44 4444467888888888776544432 357899999999999999999887775543 333322211
Q ss_pred cC-----CCccEEEEEeeC-CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEE-----eCCCcE
Q 014934 247 EG-----HRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASG-----GNDNRL 315 (415)
Q Consensus 247 ~~-----h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg-----~~dg~I 315 (415)
.- ..+..-.+-|-. ..=+-|+. |.....+.....+......-+.. =.++.|--||+++|+. .....|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~~ek~~~~~~~~~~-~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSE-GRQAARQKIEKEKALEQIEQDDH-KTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccceecccccceeeecch-hhhcccccccccccccchhhccC-CceEEEccCCcEEEEEEEeccCCceeE
Confidence 11 112233344431 12222221 11111111111111111111222 3458899999999983 233789
Q ss_pred EEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-----CCCCEEEEEECCCCC
Q 014934 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-----TGSQVCNLVWSKNVN 390 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-----~~~~V~~l~~s~~~~ 390 (415)
+|||-+ +..-..-+...+--.+++|-|.|..+.+...-+.|+.|.+|.-+ |-.-..+. ....|..++|+.++.
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCCC
Confidence 999976 43222222223334679999988744444433457789999743 33322222 122388999999999
Q ss_pred eEEEEEecCCCc-EEEEECCC
Q 014934 391 ELVSTHGYSQNQ-IIVWRYPT 410 (415)
Q Consensus 391 ~l~s~~g~~dg~-I~vw~~~s 410 (415)
.|++......+. |.+|-+.+
T Consensus 303 iLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ceeeeecccccceEEEEEecC
Confidence 998743334444 99998754
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00031 Score=64.33 Aligned_cols=194 Identities=13% Similarity=0.141 Sum_probs=116.3
Q ss_pred CCCCCeEEEEEcCCCC-eEEEEECCCcEEEEECCCCeeeEEecCC-CccEEEEEee-CCEEEEEe-CCCcEEEEECCCCC
Q 014934 206 GIDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKRVRTMEGH-RLRVGALAWS-SSLLSSGS-RDKSILQRDIRAQE 281 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~-~la~g~~dg~V~iwd~~~~~~~~~l~~h-~~~V~~l~~~-~~~l~sgs-~dg~I~iwd~~~~~ 281 (415)
+-...+..++|.|+.+ ++++....+.|..++. +++.++.+.-. .+..-.|++. ++.++..+ +++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 3445699999999754 6677777888888886 47777776532 3557777776 34444444 68999999884432
Q ss_pred cc-----EEEec-----cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC---CceeEEe--------ccCCCcEEEEE
Q 014934 282 DF-----VSKLS-----GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS---TQPVLKY--------CEHTAAVKAIA 340 (415)
Q Consensus 282 ~~-----~~~~~-----~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~---~~~~~~~--------~~h~~~V~~l~ 340 (415)
.. ...+. .+...+-+|+|+|.++.|+.+-...-..||.+.. ...+... ......+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 11 11111 3456799999999888888877776666666543 2221111 12445688999
Q ss_pred EcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC----------CCEEEEEECCCCCeEEEEEecCCCcEEEE
Q 014934 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG----------SQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (415)
Q Consensus 341 ~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~----------~~V~~l~~s~~~~~l~s~~g~~dg~I~vw 406 (415)
++|....+++-+. ..+.|..+| .+|+.+..+.-. .+.-+++|.++|+..++ + +-|.++++
T Consensus 178 ~~p~t~~lliLS~--es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv--s-EpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSD--ESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV--S-EPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEET--TTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE--E-TTTEEEEE
T ss_pred EcCCCCeEEEEEC--CCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE--c-CCceEEEe
Confidence 9999888888877 899999999 778877766522 36889999999987777 3 66666665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-05 Score=82.32 Aligned_cols=106 Identities=18% Similarity=0.275 Sum_probs=87.0
Q ss_pred eeEeecCC-CcEEEEEc-----CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 170 LNLVDWSS-HNVLAVGL-----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~-----d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
-+...|+| .-++|++. +|+|-|| +++|+..+-.+ -.-.+++++|+|..-.||.|-..|.+.+|...+.+..
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 44568999 77888873 5789998 46777544332 2346788999999999999999999999998887776
Q ss_pred EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECC
Q 014934 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIR 278 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~ 278 (415)
.....|..+|..+.|+ |..++++..-|.+.+|...
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 6677899999999998 7899999999999999765
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00036 Score=65.88 Aligned_cols=226 Identities=12% Similarity=0.058 Sum_probs=144.5
Q ss_pred eEEEEECCCCCeEEeEecCCC------CCeEEEEEcCCCCeEEEEEC--CCcEEEEECCCCeeeEEecCCCccEEEEEee
Q 014934 188 CVYLWNACSSKVTKLCDLGID------DSVCSVGWANRNTHLAVGTS--HGKVQIWDASRCKRVRTMEGHRLRVGALAWS 259 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~------~~V~~v~~sp~g~~la~g~~--dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~ 259 (415)
-|.+||..+-.....+.+... .....+.++.||+++.+... --.|.|.|+...+.+..+. -.+...-.-+.
T Consensus 68 vv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~-~PGC~~iyP~~ 146 (342)
T PF06433_consen 68 VVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID-TPGCWLIYPSG 146 (342)
T ss_dssp EEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE-GTSEEEEEEEE
T ss_pred EEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec-CCCEEEEEecC
Confidence 499999999887776666432 12234678899999888754 3469999999999888776 23333333344
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccEEE----eccccCCe-EEEEEeCCCCEEEEEeCCCcEEEEECCCCcee--EEeccC
Q 014934 260 SSLLSSGSRDKSILQRDIRAQEDFVSK----LSGHKSEV-CGLKWSYDNRELASGGNDNRLFVWNQHSTQPV--LKYCEH 332 (415)
Q Consensus 260 ~~~l~sgs~dg~I~iwd~~~~~~~~~~----~~~h~~~V-~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~--~~~~~h 332 (415)
++-|.+-+.||.+....+....+.... +..-..++ ..-++...+..++--+.+|.|+--|+...... ..+..-
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccccc
Confidence 678999999999999998855433322 11111222 23344555666666788999999888765432 222111
Q ss_pred ----------CCcEEEEEEcCCCCcEEEEEcCCCC-------CeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 333 ----------TAAVKAIAWSPHLHGLLASGGGTAD-------RCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 333 ----------~~~V~~l~~sp~~~~llasggg~~d-------~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
.+.-.-+++++..+.|++......+ ..|.++|+.+++.+..+....++.++..+.+.+-++.+
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence 1122346777665555544321012 24888899999999999877788899999998855543
Q ss_pred EecCCCcEEEEECCCCccc
Q 014934 396 HGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 396 ~g~~dg~I~vw~~~s~~~l 414 (415)
....++.|.+||..+++.+
T Consensus 307 ~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EETTTTEEEEEETTT--EE
T ss_pred EcCCCCeEEEEeCcCCcEE
Confidence 2346789999999998754
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00017 Score=71.75 Aligned_cols=219 Identities=15% Similarity=0.182 Sum_probs=121.4
Q ss_pred CcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
+++...+.++| +++++++.+|.-.|+.....+... . +.-..+.|.++++ +|+-...+.|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-F-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-E-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-c-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceE
Confidence 45678899999 899999999999999854433222 1 3456788998554 67777788999974333333223
Q ss_pred ecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC--
Q 014934 246 MEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-- 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~-- 323 (415)
+.. ...+..|-. |.+|...+.+ .|.+||+.++. .+..+... .|..+.|+++|+++|..+.+ .++|++....
T Consensus 105 i~~-~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~-~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~ 177 (443)
T PF04053_consen 105 IKL-PFSVEKIFG-GNLLGVKSSD-FICFYDWETGK-LIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAV 177 (443)
T ss_dssp ----SS-EEEEE--SSSEEEEETT-EEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHH
T ss_pred EcC-CcccceEEc-CcEEEEECCC-CEEEEEhhHcc-eeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhc
Confidence 332 123444433 7777766555 89999999886 56666643 38999999999999998865 5778775432
Q ss_pred ---------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 324 ---------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 324 ---------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
..+..+..-...|.+.+|..+ -++.+.. . .|+. +..|+.-.......++.=+.+.+..+.+..
T Consensus 178 ~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~---~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~ 249 (443)
T PF04053_consen 178 AAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS---N-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYL 249 (443)
T ss_dssp HHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T---T-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEE
T ss_pred ccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC---C-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEE
Confidence 133333333678999999976 4555542 3 7776 445543222223556666777776677776
Q ss_pred EEecCCCcEEEEECC
Q 014934 395 THGYSQNQIIVWRYP 409 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~ 409 (415)
-..|+.|..+.++
T Consensus 250 --~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 250 --IDRDGNVISYELD 262 (443)
T ss_dssp --E-TT--EEEEE--
T ss_pred --EECCCCEEEEEEC
Confidence 4577777777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00027 Score=67.83 Aligned_cols=210 Identities=13% Similarity=0.139 Sum_probs=131.4
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcC---C----CCeEEEEEC---------C-CcEEEEECCCC----eeeEE
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN---R----NTHLAVGTS---------H-GKVQIWDASRC----KRVRT 245 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp---~----g~~la~g~~---------d-g~V~iwd~~~~----~~~~~ 245 (415)
..|++.|..+.+.+..+.+.....+++++... + ..+|++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46899999999888888887777777766543 2 468888865 2 89999999884 22222
Q ss_pred e--cCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccc--cCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 246 M--EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGH--KSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 246 l--~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
+ ....++|.+++--++.|+++. .+.|.+|++..... +.....+ ...+.++... +++++.|+....|.++...
T Consensus 82 i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~-l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKT-LLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSS-EEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCccc-chhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 2 235788999988776655554 47899999988772 2222222 2345555544 6799999988888877443
Q ss_pred C-CceeEEec--cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC-------Cc----EEEEeeCCCCEEEE---E
Q 014934 322 S-TQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-------NT----HLSCMDTGSQVCNL---V 384 (415)
Q Consensus 322 ~-~~~~~~~~--~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t-------~~----~~~~~~~~~~V~~l---~ 384 (415)
. ...+..+. .....+.++.|-+++. .++.+. .+|.|.++.... +. ....+..+..|+++ .
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D--~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDED-TIIVGD--KDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEE--TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEc--CCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 3 22222222 2455688999987765 555554 799999987752 22 33455678888888 5
Q ss_pred ECC--CCC------eEEEEEecCCCcEEE
Q 014934 385 WSK--NVN------ELVSTHGYSQNQIIV 405 (415)
Q Consensus 385 ~s~--~~~------~l~s~~g~~dg~I~v 405 (415)
+.+ .+. .++. ++.+|.|.+
T Consensus 235 l~~~~~~~~~~~~~~i~~--~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILY--GTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEE--EETTS-EEE
T ss_pred eeecCCCCcccccceEEE--EecCCEEEE
Confidence 555 222 2555 567888874
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.9e-06 Score=54.81 Aligned_cols=38 Identities=39% Similarity=0.800 Sum_probs=34.1
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd 364 (415)
+++.++.+|...|.+++|+|++. +|++++ .|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~--~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGS--SDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEE--TTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeC--CCCEEEEEC
Confidence 57889999999999999999976 777776 899999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0013 Score=61.36 Aligned_cols=199 Identities=13% Similarity=0.083 Sum_probs=136.3
Q ss_pred CCeEEEEEcC-CCCeEEEEECCCc-EEEEECCCCeeeEEecCCCccE--EEEEee--CCEEEEEeC-----CCcEEEEEC
Q 014934 209 DSVCSVGWAN-RNTHLAVGTSHGK-VQIWDASRCKRVRTMEGHRLRV--GALAWS--SSLLSSGSR-----DKSILQRDI 277 (415)
Q Consensus 209 ~~V~~v~~sp-~g~~la~g~~dg~-V~iwd~~~~~~~~~l~~h~~~V--~~l~~~--~~~l~sgs~-----dg~I~iwd~ 277 (415)
.....++.+| .+..++++-.-|+ ..+||..+++....+....++- ..-+|+ +++|++.-. .|.|-+||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 3456778888 5667777777665 7889999998887775433322 234555 678877644 478999999
Q ss_pred CCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC------------------CCcEEEEECCCCceeEE--e--ccCCCc
Q 014934 278 RAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN------------------DNRLFVWNQHSTQPVLK--Y--CEHTAA 335 (415)
Q Consensus 278 ~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~------------------dg~I~iwd~~~~~~~~~--~--~~h~~~ 335 (415)
...-..+..+..|.-.-..+.+.|||+.|+++.. +..|.+.|..+++.+.+ + ..|+-.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 9554457777788777788999999988877521 22456667788887766 4 347888
Q ss_pred EEEEEEcCCCCcEEEEEcCCCC-------CeEEEEECCCCcEEEEee--------CCCCEEEEEECCCCCeEEEEEecCC
Q 014934 336 VKAIAWSPHLHGLLASGGGTAD-------RCIRFWNTTTNTHLSCMD--------TGSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 336 V~~l~~sp~~~~llasggg~~d-------~~I~iwd~~t~~~~~~~~--------~~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
|..+++.++|. ++...- .. -.|-+++- ++.+..+. -...+-+++++.++.+++++ .-.-
T Consensus 165 iRHLa~~~~G~-V~~a~Q--~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t-sPrG 238 (305)
T PF07433_consen 165 IRHLAVDGDGT-VAFAMQ--YQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT-SPRG 238 (305)
T ss_pred eeeEEecCCCc-EEEEEe--cCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE-CCCC
Confidence 99999999986 333221 11 12334433 33233332 24678899999999998886 3467
Q ss_pred CcEEEEECCCCcc
Q 014934 401 NQIIVWRYPTMSK 413 (415)
Q Consensus 401 g~I~vw~~~s~~~ 413 (415)
|.+.+||..+++-
T Consensus 239 g~~~~~d~~tg~~ 251 (305)
T PF07433_consen 239 GRVAVWDAATGRL 251 (305)
T ss_pred CEEEEEECCCCCE
Confidence 8999999988753
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.7e-05 Score=71.28 Aligned_cols=235 Identities=11% Similarity=0.122 Sum_probs=136.6
Q ss_pred CcceeEeecCC-Cc-EEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCCCe-
Q 014934 167 DFYLNLVDWSS-HN-VLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCK- 241 (415)
Q Consensus 167 ~~~i~~l~ws~-~~-~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~~~- 241 (415)
...|..+++|| ++ ++..+ .++.|.|.|+.+..++..+.. + ..+.+++|.-|. .+|..|...|.|.|||++..+
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a-~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA-Y-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccceeeeheec-c-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 34578899999 43 44444 689999999999888887763 3 789999999765 577888899999999997643
Q ss_pred eeEEecC--CCccEEEEEee--------CCEEEEEeCCCcEEEEECCCCCc-cEEEe-ccccCCeEEEEEeCCCCEEE-E
Q 014934 242 RVRTMEG--HRLRVGALAWS--------SSLLSSGSRDKSILQRDIRAQED-FVSKL-SGHKSEVCGLKWSYDNRELA-S 308 (415)
Q Consensus 242 ~~~~l~~--h~~~V~~l~~~--------~~~l~sgs~dg~I~iwd~~~~~~-~~~~~-~~h~~~V~~l~~spdg~~la-s 308 (415)
.+..+.+ ...+|..++.- +.+|+..+.+ +..|.+..... ....+ .+..+.+.+++.++..+.++ +
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~t 348 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLT 348 (463)
T ss_pred hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEE
Confidence 2222221 12334443322 3344444433 44555543221 11111 12234455566665444443 3
Q ss_pred EeCCC------cEE-EEECCCCceeEEec-cCCC----c---EEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE
Q 014934 309 GGNDN------RLF-VWNQHSTQPVLKYC-EHTA----A---VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC 373 (415)
Q Consensus 309 g~~dg------~I~-iwd~~~~~~~~~~~-~h~~----~---V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~ 373 (415)
.-.+. .|. --|-.+|.++...+ .|.+ . -.++.=.++...++..++ ..+.+.+||..+++.++.
T Consensus 349 yRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd--~tn~lil~D~~s~evvQ~ 426 (463)
T KOG1645|consen 349 YRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD--STNELILQDPHSFEVVQT 426 (463)
T ss_pred ecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC--CcceeEEeccchhheeee
Confidence 22211 011 11223343333221 1100 0 012222455555555554 788999999999999999
Q ss_pred eeCCCCEEEEEECCC--CCeEEEEEecCCCcEEEEECCC
Q 014934 374 MDTGSQVCNLVWSKN--VNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 374 ~~~~~~V~~l~~s~~--~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+....+|..++.... +.+|++ -.|..++||+.++
T Consensus 427 l~~~epv~Dicp~~~n~~syLa~---LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 427 LALSEPVLDICPNDTNGSSYLAL---LTDDRVHIYKNES 462 (463)
T ss_pred cccCcceeecceeecCCcchhhh---eecceEEEEecCC
Confidence 998888887765442 345555 2477899998764
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00016 Score=74.27 Aligned_cols=190 Identities=13% Similarity=0.193 Sum_probs=128.7
Q ss_pred EEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCcc-EEEEEeeC--CEEEEEeCCCc-----EEEEECCCCC-----
Q 014934 215 GWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLR-VGALAWSS--SLLSSGSRDKS-----ILQRDIRAQE----- 281 (415)
Q Consensus 215 ~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~-V~~l~~~~--~~l~sgs~dg~-----I~iwd~~~~~----- 281 (415)
+|++.+..+|.|+.+|.|.+++- ..+.++.+..+... |..+-... ++|++.+.|+. +++||+....
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 46788899999999999988874 34555777777766 44333333 57888777654 8999987531
Q ss_pred ccE--EEecc-----ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC---C-CceeEEeccCCCcEEEEEEcCCCCcEEE
Q 014934 282 DFV--SKLSG-----HKSEVCGLKWSYDNRELASGGNDNRLFVWNQH---S-TQPVLKYCEHTAAVKAIAWSPHLHGLLA 350 (415)
Q Consensus 282 ~~~--~~~~~-----h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~---~-~~~~~~~~~h~~~V~~l~~sp~~~~lla 350 (415)
.++ +.+.+ ...++++++.+.+-+.+|+|-.+|.|..+.-. . +....-...-..+|+++++.-++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 222 12222 34678999999999999999999999988532 1 1111111234578999999999886333
Q ss_pred EEcCCCCCeEEEEECCCCcE-EEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 351 SGGGTADRCIRFWNTTTNTH-LSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 351 sggg~~d~~I~iwd~~t~~~-~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
.. .-..|.+|.+....+ +..++ +|..+.+..+++....++++ | ..-|.+|+.+..
T Consensus 189 v~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~--~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 189 VA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-G--SEFLYFYDSDGR 245 (933)
T ss_pred EE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-c--CceEEEEcCCCc
Confidence 33 357899999984442 33344 67788888898877756653 3 447888887643
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00063 Score=66.29 Aligned_cols=228 Identities=17% Similarity=0.210 Sum_probs=130.2
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCC----------------CCeEEEEEcCCCCeEEEEECC-C
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGID----------------DSVCSVGWANRNTHLAVGTSH-G 230 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~----------------~~V~~v~~sp~g~~la~g~~d-g 230 (415)
.+....||| ++.||...++.|++++..+++..++..-+.. +.-..+-|||||++||....| .
T Consensus 44 ~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~ 123 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDER 123 (353)
T ss_dssp TBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-T
T ss_pred ccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCc
Confidence 355778999 8999999999999999988866655542311 123567899999999886443 2
Q ss_pred cEE-----------------------------------EEECCCCeeeE--Ee---cCCCccEEEEEeeC--CEEEEE--
Q 014934 231 KVQ-----------------------------------IWDASRCKRVR--TM---EGHRLRVGALAWSS--SLLSSG-- 266 (415)
Q Consensus 231 ~V~-----------------------------------iwd~~~~~~~~--~l---~~h~~~V~~l~~~~--~~l~sg-- 266 (415)
.|. |+|+.+++... .. ..-...+..+.|.+ ..|+..
T Consensus 124 ~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~ 203 (353)
T PF00930_consen 124 EVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWL 203 (353)
T ss_dssp TS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEE
T ss_pred CCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEc
Confidence 222 23443333211 01 12234567777762 323333
Q ss_pred eCCC---cEEEEECCCCCccEEEeccccCC---eEEEEEe-CCCCEEE-EEeCCC--cEEEEECCCCceeEEeccCCCcE
Q 014934 267 SRDK---SILQRDIRAQEDFVSKLSGHKSE---VCGLKWS-YDNRELA-SGGNDN--RLFVWNQHSTQPVLKYCEHTAAV 336 (415)
Q Consensus 267 s~dg---~I~iwd~~~~~~~~~~~~~h~~~---V~~l~~s-pdg~~la-sg~~dg--~I~iwd~~~~~~~~~~~~h~~~V 336 (415)
.++. .+.++|..++............. -....|. +++..++ ....|| .|++++...+. ...+....-.|
T Consensus 204 nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V 282 (353)
T PF00930_consen 204 NRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEV 282 (353)
T ss_dssp ETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-E
T ss_pred ccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceee
Confidence 3333 35666776654322221212222 2345554 6655544 444666 46666776665 34565556667
Q ss_pred EE-EEEcCCCCcEEEEEcCC--CCCeEEEEECCCCcEEEEeeCCCCE-EEEEECCCCCeEEEEEe
Q 014934 337 KA-IAWSPHLHGLLASGGGT--ADRCIRFWNTTTNTHLSCMDTGSQV-CNLVWSKNVNELVSTHG 397 (415)
Q Consensus 337 ~~-l~~sp~~~~llasggg~--~d~~I~iwd~~t~~~~~~~~~~~~V-~~l~~s~~~~~l~s~~g 397 (415)
.. +.|.+.+..++.++.+. ....|..-++..+..+..+...... ..+.|||++++++.++.
T Consensus 283 ~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 283 TSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred cccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 54 78899988888777631 2456777777734445566544333 58999999999988654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0013 Score=65.22 Aligned_cols=210 Identities=15% Similarity=0.155 Sum_probs=114.7
Q ss_pred eecCC-CcEEEEEcCC------------eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC
Q 014934 173 VDWSS-HNVLAVGLGN------------CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 173 l~ws~-~~~la~~~d~------------~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~ 239 (415)
++-+| +..||+..+. .|.||+... +.+..+.... +.+.++.|+.+.. |++-..||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~-~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDS-GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECC-CCEEEEEECCCCe-EEEEEcCCEEEEEeCCC
Confidence 34455 5666666555 589998754 4445555455 8999999998655 55567999999999863
Q ss_pred Ce------eeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEec---c-----ccCCeE--EEEEeCCC
Q 014934 240 CK------RVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS---G-----HKSEVC--GLKWSYDN 303 (415)
Q Consensus 240 ~~------~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~-----h~~~V~--~l~~spdg 303 (415)
.. .+....-....+....+.+.-++.-..++.+++..--........+. . |..... ...++.+.
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~ 190 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR 190 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc
Confidence 22 11111111222333232212233333445454442211110111110 0 000000 02344455
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC--CCEE
Q 014934 304 RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--SQVC 381 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~--~~V~ 381 (415)
...+....++.+.+.+....+. + ...+++..++.||+++ .+|.-. .+|.+.+.+..-.+.+.+++.+ ....
T Consensus 191 ~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~-~iAl~t--~~g~l~v~ssDf~~~~~e~~~~~~~~p~ 263 (410)
T PF04841_consen 191 VVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGK-FIALFT--DSGNLWVVSSDFSEKLCEFDTDSKSPPK 263 (410)
T ss_pred ceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCC-EEEEEE--CCCCEEEEECcccceeEEeecCcCCCCc
Confidence 5555555555666444332211 2 2346899999999998 555554 6899999987777777777655 5667
Q ss_pred EEEECCCCCeE
Q 014934 382 NLVWSKNVNEL 392 (415)
Q Consensus 382 ~l~~s~~~~~l 392 (415)
.+.|.-++-.+
T Consensus 264 ~~~WCG~dav~ 274 (410)
T PF04841_consen 264 QMAWCGNDAVV 274 (410)
T ss_pred EEEEECCCcEE
Confidence 78887765433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00055 Score=67.27 Aligned_cols=199 Identities=18% Similarity=0.255 Sum_probs=116.5
Q ss_pred CeEEEEEcCCCCeEEEEECCCcEEEEECCCCe-------------------------------------------eeEEe
Q 014934 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-------------------------------------------RVRTM 246 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~-------------------------------------------~~~~l 246 (415)
.|+.+.|+++..-||+|...|.|.||.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998889999999999998642211 11112
Q ss_pred cCCCccEEEEEeeC-CEEEEEeCCCcEEEEECCCCCccEEE--ecc------ccCCeEEEEEeC-----CC---CEEEEE
Q 014934 247 EGHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSK--LSG------HKSEVCGLKWSY-----DN---RELASG 309 (415)
Q Consensus 247 ~~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~------h~~~V~~l~~sp-----dg---~~lasg 309 (415)
....++|++++.++ .+++.|..+|.+.|.|+|.+. .+.. +.. ....|+++.|.. |+ -.|++|
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPa-vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPA-VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTE-EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCe-EEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 23467899999874 799999999999999998876 3322 111 234588888873 33 468899
Q ss_pred eCCCcEEEEECC-C--Ccee----EEeccCCCcEEEEE-EcCC-C-------------------CcEEEEEcCCCCCeEE
Q 014934 310 GNDNRLFVWNQH-S--TQPV----LKYCEHTAAVKAIA-WSPH-L-------------------HGLLASGGGTADRCIR 361 (415)
Q Consensus 310 ~~dg~I~iwd~~-~--~~~~----~~~~~h~~~V~~l~-~sp~-~-------------------~~llasggg~~d~~I~ 361 (415)
.+.|.+.+|.+. . +... .....+.+.|..|. +..+ | +.+++.++ +..||
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS---e~~ir 238 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS---ESDIR 238 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE----SSEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc---ccceE
Confidence 999999999874 1 2111 11224556666654 3221 1 12455553 78999
Q ss_pred EEECCCCcEEEEeeCCCCEE-EEEEC-----CCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 362 FWNTTTNTHLSCMDTGSQVC-NLVWS-----KNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 362 iwd~~t~~~~~~~~~~~~V~-~l~~s-----~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
++...+.+..+.......++ .+.+- ..+..|++ =..+|.|+++.+|.++++
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~--l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVC--LFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEE--EETTSEEEEEETTT--EE
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEE--EECCCcEEEEECCCchHh
Confidence 99999888776655222232 34442 24555666 457999999999999876
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00053 Score=69.72 Aligned_cols=199 Identities=12% Similarity=-0.013 Sum_probs=124.3
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC----cEEEEECCCCeeeEEecCCCccEEEEEeeCC
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG----KVQIWDASRCKRVRTMEGHRLRVGALAWSSS 261 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg----~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~ 261 (415)
.+.+.+.|..+.++...+..+ +....+.++++|+++++.+.+. ++..-+..+...+..+.- ..+..+.-+++
T Consensus 214 ~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni--~~iea~vkdGK 289 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI--ARIEEAVKAGK 289 (635)
T ss_pred eEEEEEEECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch--HHHHHhhhCCC
Confidence 356778888887776666543 3567789999999998886432 232222222211111110 00111111244
Q ss_pred EEEEEeCCCcEEEEECCC----CCccEEEeccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCCCce-----------
Q 014934 262 LLSSGSRDKSILQRDIRA----QEDFVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHSTQP----------- 325 (415)
Q Consensus 262 ~l~sgs~dg~I~iwd~~~----~~~~~~~~~~h~~~V~~l~~spdg~~lasg~-~dg~I~iwd~~~~~~----------- 325 (415)
+... .++.|.+.|.++ .......+ .-.....++.++|||+++++++ .++.|.|.|+.+.+.
T Consensus 290 ~~~V--~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 290 FKTI--GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred EEEE--CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 4444 367899999987 33233333 3456788999999999987655 589999999987543
Q ss_pred -eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC----------CcEEEEeeCCCCEEEEEE------CCC
Q 014934 326 -VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT----------NTHLSCMDTGSQVCNLVW------SKN 388 (415)
Q Consensus 326 -~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t----------~~~~~~~~~~~~V~~l~~------s~~ 388 (415)
+.+.+- ...-...+|.++|. .++|-- .|..|..||+.+ ...+..++.+.++-.+.- .++
T Consensus 367 vvaevev-GlGPLHTaFDg~G~-aytslf--~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~d 442 (635)
T PRK02888 367 VVAEPEL-GLGPLHTAFDGRGN-AYTTLF--LDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEAD 442 (635)
T ss_pred EEEeecc-CCCcceEEECCCCC-EEEeEe--ecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCC
Confidence 222221 22334578888886 777765 799999999986 345666665555555555 678
Q ss_pred CCeEEEE
Q 014934 389 VNELVST 395 (415)
Q Consensus 389 ~~~l~s~ 395 (415)
|++|++.
T Consensus 443 gk~l~~~ 449 (635)
T PRK02888 443 GKWLVSL 449 (635)
T ss_pred CCEEEEc
Confidence 8888773
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00068 Score=68.50 Aligned_cols=110 Identities=27% Similarity=0.447 Sum_probs=81.7
Q ss_pred ceeEeecCCCcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee-----
Q 014934 169 YLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR----- 242 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~----- 242 (415)
+++|++-. ..+++.| +-|.||+|+-.+++......-+..+.+..+..+++..++|.|+..|.|.++-+.....
T Consensus 37 ~lTc~dst-~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 37 KLTCVDAT-EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEEeecC-CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 45566544 5667777 4689999998887765554323455667777889999999999999999998865321
Q ss_pred eEEe-cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCC
Q 014934 243 VRTM-EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRA 279 (415)
Q Consensus 243 ~~~l-~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~ 279 (415)
+... ..|..+|++++|+ +..+++|...|+|....+..
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1112 2478899999998 57899999999998877765
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00084 Score=69.23 Aligned_cols=213 Identities=13% Similarity=0.171 Sum_probs=129.0
Q ss_pred cCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCC-CeEEEEEcCCCCeEEEEECCC-----cEEEEECCCC------
Q 014934 175 WSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDD-SVCSVGWANRNTHLAVGTSHG-----KVQIWDASRC------ 240 (415)
Q Consensus 175 ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~-~V~~v~~sp~g~~la~g~~dg-----~V~iwd~~~~------ 240 (415)
|++ +..++.| .+|.|.+++-.- +...-+. .+.. .|+.+-...+..+|++-+.|+ .|+|||++..
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSSF-QLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EcCCCceEEEeeccccEEEecccc-eeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 444 4555555 689999987432 2212222 2222 344444333446676665554 4899998542
Q ss_pred eee---EEec----CCCccEEEEEeeC--CEEEEEeCCCcEEEEE--C-CCCCccEEEeccccCCeEEEEEeCCCCEEEE
Q 014934 241 KRV---RTME----GHRLRVGALAWSS--SLLSSGSRDKSILQRD--I-RAQEDFVSKLSGHKSEVCGLKWSYDNRELAS 308 (415)
Q Consensus 241 ~~~---~~l~----~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd--~-~~~~~~~~~~~~h~~~V~~l~~spdg~~las 308 (415)
.++ +.+. ....++.+++.+. ..+++|-.+|.|..+. + |............+.+|+++.+..++..++-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 233 2222 1245677888873 6899999999999884 2 2222112233344678999999988887333
Q ss_pred EeCCCcEEEEECCCCcee-EEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECC
Q 014934 309 GGNDNRLFVWNQHSTQPV-LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSK 387 (415)
Q Consensus 309 g~~dg~I~iwd~~~~~~~-~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~ 387 (415)
...-..|.+|.+....+. ..+..|...+.|..+++....+++++ +..|.+|+......-..+..+..-. +.|..
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~----~e~l~fY~sd~~~~cfaf~~g~kk~-~~~~~ 263 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG----SEFLYFYDSDGRGPCFAFEVGEKKE-MLVFS 263 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec----CceEEEEcCCCcceeeeecCCCeEE-EEEEe
Confidence 333457999999855544 44777888899999998765455554 5789999998665555554333222 33333
Q ss_pred CCCeEEE
Q 014934 388 NVNELVS 394 (415)
Q Consensus 388 ~~~~l~s 394 (415)
.|..|++
T Consensus 264 ~g~~L~v 270 (933)
T KOG2114|consen 264 FGLLLCV 270 (933)
T ss_pred cCEEEEE
Confidence 3444444
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1e-06 Score=87.24 Aligned_cols=197 Identities=19% Similarity=0.246 Sum_probs=135.7
Q ss_pred CCCeEEEEEcCCC--CeEEEEECCCcEEEEECCCCe--eeEEecCCCccEEEEEeeC---CEEEEEe----CCCcEEEEE
Q 014934 208 DDSVCSVGWANRN--THLAVGTSHGKVQIWDASRCK--RVRTMEGHRLRVGALAWSS---SLLSSGS----RDKSILQRD 276 (415)
Q Consensus 208 ~~~V~~v~~sp~g--~~la~g~~dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~~~~---~~l~sgs----~dg~I~iwd 276 (415)
...+.|+++..+. ..+++|..+|.|-+-...... -.....+|...+++++|++ +.|+.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4578888887644 489999999999998875432 2344567889999999994 5677663 456799999
Q ss_pred CCCCCc-cE--EEec-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeEEeccCCCcEEEEEEcCCCCcEEEE
Q 014934 277 IRAQED-FV--SKLS-GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-PVLKYCEHTAAVKAIAWSPHLHGLLAS 351 (415)
Q Consensus 277 ~~~~~~-~~--~~~~-~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l~~sp~~~~llas 351 (415)
+.+.-. +. ..+. +......+++|..+.+++.+|.....+.++|++... .... -.+..|..+...|.....+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCceec
Confidence 987621 11 1112 233456688999999999999999999999998432 1222 234467778888977778887
Q ss_pred EcCCCCCeEEEEEC-CCC-cEEEEeeC-----CCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 352 GGGTADRCIRFWNT-TTN-THLSCMDT-----GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 352 ggg~~d~~I~iwd~-~t~-~~~~~~~~-----~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
. .|+.|.+||. ..- .++..+.+ ..++..++|+|...-+.++..-..+.|+++++.
T Consensus 214 ~---~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 N---SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c---ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 6 5999999994 222 22222221 236999999997655544434566788888875
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00064 Score=69.13 Aligned_cols=105 Identities=10% Similarity=0.144 Sum_probs=80.5
Q ss_pred eCCCCEEEEEeCCCcEEEEECCC----CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE-----
Q 014934 300 SYDNRELASGGNDNRLFVWNQHS----TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH----- 370 (415)
Q Consensus 300 spdg~~lasg~~dg~I~iwd~~~----~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~----- 370 (415)
.++|++... .++.|.+.|.++ +..+..+-.-......++++|+|+++++++. .+.++.|.|+.+.+.
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank--lS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK--LSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC--CCCcEEEEEChhhhhhhhcc
Confidence 457877665 367899999988 3333333345566788999999999999887 899999999988653
Q ss_pred -------EEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 371 -------LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 371 -------~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+.++..+..-...+|+.+|+...+ -+-|.+|..|++..
T Consensus 361 ~~~~~~vvaevevGlGPLHTaFDg~G~ayts--lf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLGPLHTAFDGRGNAYTT--LFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCCcceEEECCCCCEEEe--EeecceeEEEehHH
Confidence 455556666778999999985555 56789999999875
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00026 Score=74.42 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=101.3
Q ss_pred CCCcEEEEECCCCeeeEEecCCCcc-EEEEEee-------CCEEEEEeCCCcEEEEECCCCCccEEEec----cccCCeE
Q 014934 228 SHGKVQIWDASRCKRVRTMEGHRLR-VGALAWS-------SSLLSSGSRDKSILQRDIRAQEDFVSKLS----GHKSEVC 295 (415)
Q Consensus 228 ~dg~V~iwd~~~~~~~~~l~~h~~~-V~~l~~~-------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~h~~~V~ 295 (415)
....|+-.|++.|+.+.....|... |..++-. +...+.|-.+..+..||.|-....+..-. .......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4577999999999999999877644 7777654 45677888899999999997542222111 2344577
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 296 GLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 296 ~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
|++-+.+| +||+|+.+|.|++||-...+.-..+.+-..+|.+|..+.+|+++|||+ +..|.++++.
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc----~tyLlLi~t~ 647 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC----KTYLLLIDTL 647 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee----cceEEEEEEe
Confidence 77777655 899999999999999544344445556678999999999999999997 6788888863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0016 Score=59.29 Aligned_cols=191 Identities=12% Similarity=0.150 Sum_probs=109.5
Q ss_pred eEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEe-----cCCCCCeEEEEEcCCC------CeEEEEECCCcEEEEEC
Q 014934 171 NLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCD-----LGIDDSVCSVGWANRN------THLAVGTSHGKVQIWDA 237 (415)
Q Consensus 171 ~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~-----~~~~~~V~~v~~sp~g------~~la~g~~dg~V~iwd~ 237 (415)
..++||| +.+||.+ +.|+|+++|+...++..+-. ..-...|..+.|.+-. ..|++-..+|.++=|-+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v 126 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV 126 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence 3689999 7788888 46899999997655432211 0123567777775421 24666678888887775
Q ss_pred CC-----CeeeEEec---CCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCE--
Q 014934 238 SR-----CKRVRTME---GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-- 305 (415)
Q Consensus 238 ~~-----~~~~~~l~---~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~-- 305 (415)
.. .+...++. .+...|+++.+++ ++|++|+.... .. . .-.+....+++-..-.+..+
T Consensus 127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~-~----~s~a~~~GLtaWRiL~~~Pyyk 195 (282)
T PF15492_consen 127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QD-G----MSKASSCGLTAWRILSDSPYYK 195 (282)
T ss_pred EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CC-c----cccccccCceEEEEcCCCCcEE
Confidence 32 23333333 2467899999995 56666654322 00 0 00111222332222211111
Q ss_pred EEEEeCCC------cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 306 LASGGNDN------RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 306 lasg~~dg------~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
.++...|+ +..+|.+-+.+...........|..+..||+|. +||+.. .+|.|.+|++.+-.+.....
T Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih--~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 196 QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-LLACIH--FSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC-EEEEEE--cCCeEEEEecCcchhhcccc
Confidence 11222222 123444433322222234567899999999998 777776 89999999999877666554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0002 Score=71.15 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=87.8
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcC-CCCeEEEE----ECCCc----EEEEECCCCeeeE--Ee-cCCCccEEE
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-RNTHLAVG----TSHGK----VQIWDASRCKRVR--TM-EGHRLRVGA 255 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-~g~~la~g----~~dg~----V~iwd~~~~~~~~--~l-~~h~~~V~~ 255 (415)
.+.++....++...+.....+....++.|+- ++..+.+. +.+|. -.+|++...+..+ .. -.....|.+
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ 264 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVIC 264 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceE
Confidence 4555555555544444333344557777775 33444432 23444 3456665543221 11 136778999
Q ss_pred EEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 256 LAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 256 l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
.++++ +.|+.|+.||.|.+||...+.. ......-....++|+|+|..|++|+.-|.+.+||+.
T Consensus 265 ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 265 CARSPSEDKLVLGCEDGSIILYDTTRGVT---LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EecCcccceEEEEecCCeEEEEEcCCCee---eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 99984 7999999999999999976642 222344567889999999999999999999999975
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00034 Score=69.41 Aligned_cols=203 Identities=15% Similarity=0.192 Sum_probs=129.3
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE---CC-CcEEEEECCCCeeeEEecCCCccEEEEEeeC---
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT---SH-GKVQIWDASRCKRVRTMEGHRLRVGALAWSS--- 260 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~---~d-g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--- 260 (415)
.+++-|.. +.....+. .....+..-+|+|+++.++.-. .. ..+.++|+.+++....+. ..+.-..-+|+|
T Consensus 174 ~l~~~D~d-g~~~~~l~-~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLT-DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC-CcceeEec-ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 45555554 44444443 3356778889999998766542 22 359999998886555544 223334456663
Q ss_pred CEEEEEeCCCc--EEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC-C--cEEEEECCCCceeEEeccCCCc
Q 014934 261 SLLSSGSRDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N--RLFVWNQHSTQPVLKYCEHTAA 335 (415)
Q Consensus 261 ~~l~sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d-g--~I~iwd~~~~~~~~~~~~h~~~ 335 (415)
.++++..+||. |++.|+.... ...+....+.-+.-.|+|||+.++-.+.. | .|.++|...+.. ..+......
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~ 327 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG 327 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC
Confidence 46667777875 6666877766 33344333444467899999998876543 3 578888876654 344333333
Q ss_pred EEEEEEcCCCCcEEEEEcCCCCCe--EEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEec
Q 014934 336 VKAIAWSPHLHGLLASGGGTADRC--IRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 336 V~~l~~sp~~~~llasggg~~d~~--I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
-..-.|+|+|+.++.... .+|. |.+.|+.++..++.+........-.|.+++..++..++.
T Consensus 328 ~~~p~~SpdG~~i~~~~~--~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 328 NSNPVWSPDGDKIVFESS--SGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CcCccCCCCCCEEEEEec--cCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 337889999997777663 3444 777777777655555555555667788888887775443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0026 Score=64.74 Aligned_cols=230 Identities=10% Similarity=0.056 Sum_probs=134.6
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCC-CeEEEEEcC--CCCeEEEEE---------CCCcEEEEECCCCeeeEE
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDD-SVCSVGWAN--RNTHLAVGT---------SHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~-~V~~v~~sp--~g~~la~g~---------~dg~V~iwd~~~~~~~~~ 245 (415)
+.+++...++.|+-+|..+|+..-........ .-..+.-+| .+..+++|+ .+|.|..+|..+++.+-.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 45555557899999999999987766543211 001111122 234555654 367899999999987765
Q ss_pred ecCCCc--------------------cE-EEEEee--CCEEEEEeCCC------------------cEEEEECCCCCccE
Q 014934 246 MEGHRL--------------------RV-GALAWS--SSLLSSGSRDK------------------SILQRDIRAQEDFV 284 (415)
Q Consensus 246 l~~h~~--------------------~V-~~l~~~--~~~l~sgs~dg------------------~I~iwd~~~~~~~~ 284 (415)
+..... .| ...+.. ...++.++.++ .|.-+|..+++..-
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 542111 01 012222 46778887665 68889998887432
Q ss_pred EEecc-ccC---Ce-EEEEEe----CCCC---EEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEE
Q 014934 285 SKLSG-HKS---EV-CGLKWS----YDNR---ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 285 ~~~~~-h~~---~V-~~l~~s----pdg~---~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 352 (415)
..-.. |.. .. ....+. -++. .++.++.+|.+...|.++++.+.+.... ...++..| + .+++..
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~vyv~~ 345 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-LVYLGA 345 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-eEEEcc
Confidence 22111 110 00 001111 1343 5778889999999999999998876422 11233444 2 233321
Q ss_pred c---------------CCCCCeEEEEECCCCcEEEEeeCC---------CCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 353 G---------------GTADRCIRFWNTTTNTHLSCMDTG---------SQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 353 g---------------g~~d~~I~iwd~~t~~~~~~~~~~---------~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
. ...++.|.-.|+.+|+.+...... .....-.....+..|++ |+.||.|+.+|.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~--g~~dG~l~ald~ 423 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA--GAADGYFRAFDA 423 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE--ECCCCeEEEEEC
Confidence 0 114678999999999988877654 11111111124566666 678999999999
Q ss_pred CCCccc
Q 014934 409 PTMSKV 414 (415)
Q Consensus 409 ~s~~~l 414 (415)
.+++.+
T Consensus 424 ~tG~~l 429 (488)
T cd00216 424 TTGKEL 429 (488)
T ss_pred CCCcee
Confidence 888754
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0065 Score=55.72 Aligned_cols=194 Identities=13% Similarity=0.123 Sum_probs=110.2
Q ss_pred CCCCCCcceeEeecCC--CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC
Q 014934 162 PALQDDFYLNLVDWSS--HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 162 ~~l~~~~~i~~l~ws~--~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~ 238 (415)
|.+.++ +..+.|+| +.++|+.. .+.|+.++. +|++.+.+.+...+..-.|++..++.++++--.++.+.++++.
T Consensus 18 ~g~~~e--~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 18 PGILDE--LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp TT--S---EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred CCccCC--ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 455544 88999998 44666664 468888886 5788888877555678899998888777665568899999883
Q ss_pred CCe------eeEEec-----CCCccEEEEEeeC--CEEEEEeCCCcEEEEECCC--CCccE--EEec------cccCCeE
Q 014934 239 RCK------RVRTME-----GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRA--QEDFV--SKLS------GHKSEVC 295 (415)
Q Consensus 239 ~~~------~~~~l~-----~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~--~~~~~--~~~~------~h~~~V~ 295 (415)
... ....+. .+...+-.++|++ +.|+.+-...-..++.+.. ..... .... .....+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112221 3456689999983 5666666665556665543 11111 1111 2334688
Q ss_pred EEEEeCC-CCEEEEEeCCCcEEEEECCCCceeEEeccCC---------CcEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 296 GLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLKYCEHT---------AAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 296 ~l~~spd-g~~lasg~~dg~I~iwd~~~~~~~~~~~~h~---------~~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
+++++|. +.+++....+..|.++| .+|+++..+.-.. ...-.|+|.++|. |++++ +.+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvs---EpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVS---EPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEE---TTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEc---CCceEEEe
Confidence 9999985 55667777888999999 5777665553221 2467899999986 77766 45555544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.3e-05 Score=71.48 Aligned_cols=201 Identities=15% Similarity=0.117 Sum_probs=135.6
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC---eeeEEecCCCccEEEEEee--CCEEEEEeC-CCcEEEEECCC
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---KRVRTMEGHRLRVGALAWS--SSLLSSGSR-DKSILQRDIRA 279 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~---~~~~~l~~h~~~V~~l~~~--~~~l~sgs~-dg~I~iwd~~~ 279 (415)
-|.+.|+.+.-. ..+++.+++.||.++.|--..- +.+..+..|.+.|.+++.+ +-.+.+++. |..++++|+.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 466777766443 5678999999999999985431 3344456788888877776 566777677 99999999987
Q ss_pred CCcc-EEEeccccCCeEEEEEeCC-C-CEEEE-EeCCCcEEEEECCCC--ceeEEeccCCCcEEEEEEcCCCCcEEEEEc
Q 014934 280 QEDF-VSKLSGHKSEVCGLKWSYD-N-RELAS-GGNDNRLFVWNQHST--QPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 280 ~~~~-~~~~~~h~~~V~~l~~spd-g-~~las-g~~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~sp~~~~llasgg 353 (415)
-... ...+.--.+.++.+ .++. . ..+|+ .-.++.+.|+|-... +....-.-|..+|..+.+.+.+. .+++..
T Consensus 86 ~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~vSiD 163 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SAVSID 163 (558)
T ss_pred cchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ceeecc
Confidence 6521 11222222223222 1221 1 13443 346789999997654 33344446999999999999987 455543
Q ss_pred CCCCCeEEEEECCC------CcEEEEe----------eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 354 GTADRCIRFWNTTT------NTHLSCM----------DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 354 g~~d~~I~iwd~~t------~~~~~~~----------~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
..|.|.-|.... .+....+ +..+...++.|+|++..+.+. ..|..|+++.+.+++-
T Consensus 164 --~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl--~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 164 --ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL--NPDRKVRGFVFKTGKL 235 (558)
T ss_pred --ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc--CcccEEEEEEeccchh
Confidence 679999999873 2121122 234567899999999999884 4899999999988764
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00024 Score=70.56 Aligned_cols=91 Identities=13% Similarity=0.314 Sum_probs=70.8
Q ss_pred EEEEECCCCCe--EEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC--CEEE
Q 014934 189 VYLWNACSSKV--TKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLS 264 (415)
Q Consensus 189 V~iwd~~~~~~--~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~~l~ 264 (415)
-.+|+...+++ ..+..+.....|.|++++|+.+.|+.|+.||.|.+||...+. ..+....-..+.++|+| .+++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEE
Confidence 45666665544 333444678899999999999999999999999999987663 22333456688999984 6999
Q ss_pred EEeCCCcEEEEECCCCC
Q 014934 265 SGSRDKSILQRDIRAQE 281 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~ 281 (415)
+|+..|.+.+||+.-..
T Consensus 316 V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 316 VGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCceEEEEEeecCc
Confidence 99999999999987544
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.004 Score=63.45 Aligned_cols=194 Identities=12% Similarity=0.117 Sum_probs=115.7
Q ss_pred cEEEEEcCCeEEEEECCCCCeEEeEecCCCC-----CeE--EEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCc
Q 014934 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGIDD-----SVC--SVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL 251 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~-----~V~--~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~ 251 (415)
.+++...++.|+-+|..+|+..-........ .+. .+... ++..+++++.+|.|.-+|.++++.+-.+.....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 3444446789999999999876655432210 000 11111 226788889999999999999988766653322
Q ss_pred c-----E-EEEEeeCCEEEEEe---------CCCcEEEEECCCCCccEEEeccccC-------------------Ce-EE
Q 014934 252 R-----V-GALAWSSSLLSSGS---------RDKSILQRDIRAQEDFVSKLSGHKS-------------------EV-CG 296 (415)
Q Consensus 252 ~-----V-~~l~~~~~~l~sgs---------~dg~I~iwd~~~~~~~~~~~~~h~~-------------------~V-~~ 296 (415)
. + ......+..++.++ .++.++.+|..+++..-..-..... .| ..
T Consensus 142 ~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~ 221 (488)
T cd00216 142 VPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWAS 221 (488)
T ss_pred cCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCC
Confidence 1 1 12223345666664 3678899999888743222111110 01 12
Q ss_pred EEEeCCCCEEEEEeCCC------------------cEEEEECCCCceeEEeccCCCcEE------EEEEc----CCCC--
Q 014934 297 LKWSYDNRELASGGNDN------------------RLFVWNQHSTQPVLKYCEHTAAVK------AIAWS----PHLH-- 346 (415)
Q Consensus 297 l~~spdg~~lasg~~dg------------------~I~iwd~~~~~~~~~~~~h~~~V~------~l~~s----p~~~-- 346 (415)
..+.+.+..++.++.++ .|.-+|+++++.+.+++.-..... ...+. -++.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~ 301 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV 301 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence 34455567777777665 799999999999888742111110 01111 1222
Q ss_pred cEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 347 GLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 347 ~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
.+++.++ .+|.+...|..+|+.+....
T Consensus 302 ~~V~~g~--~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 302 PAIVHAP--KNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred EEEEEEC--CCceEEEEECCCCcEeeEeE
Confidence 2445544 79999999999999987765
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.009 Score=56.68 Aligned_cols=215 Identities=16% Similarity=0.169 Sum_probs=127.3
Q ss_pred ecCC-Cc-EEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCC-
Q 014934 174 DWSS-HN-VLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH- 249 (415)
Q Consensus 174 ~ws~-~~-~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h- 249 (415)
.|.+ .+ ++.+. .++.|.-|+..+++..... ..+.+.++.....+..|++ +..| +.+++.+++..+..+..-
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~-~~~g-~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIA-CEHG-VRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEE-Eccc-cEEEeccCCceeEEecccc
Confidence 4777 44 44444 5789999999877654433 3455566665555555554 3443 667777666553333211
Q ss_pred ----CccEEEEEeeC-CEEEEEeCC------------CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC
Q 014934 250 ----RLRVGALAWSS-SLLSSGSRD------------KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND 312 (415)
Q Consensus 250 ----~~~V~~l~~~~-~~l~sgs~d------------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d 312 (415)
..+.+.+...+ ..+..+... |.++.+|. .+. ....+..+-..-++|+||||++.|..+...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~-~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG-VVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC-EEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 12333333332 233333322 33444443 222 355555555667889999999888777654
Q ss_pred -CcEEEEECCC--C-----ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCC-CeEEEEECCCCcEEEEeeCC-CCEEE
Q 014934 313 -NRLFVWNQHS--T-----QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTAD-RCIRFWNTTTNTHLSCMDTG-SQVCN 382 (415)
Q Consensus 313 -g~I~iwd~~~--~-----~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d-~~I~iwd~~t~~~~~~~~~~-~~V~~ 382 (415)
+.|+-|++.. + .....+..+.+..-.++...+|. +.+++. .. +.|.+|+.. |+.+..+... ..+++
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~--~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAV--WGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecc--cCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 7888888752 1 11222323445566677777776 554332 23 389999998 9999999866 77888
Q ss_pred EEEC-CCCCeEEEEEecC
Q 014934 383 LVWS-KNVNELVSTHGYS 399 (415)
Q Consensus 383 l~~s-~~~~~l~s~~g~~ 399 (415)
++|- ++.+.|.+++...
T Consensus 260 ~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 260 PAFGGPDLNTLYITSARS 277 (307)
T ss_pred ceEeCCCcCEEEEEecCC
Confidence 8885 4567777664444
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.005 Score=55.45 Aligned_cols=131 Identities=12% Similarity=0.109 Sum_probs=88.9
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEe-eCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEE
Q 014934 220 NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAW-SSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLK 298 (415)
Q Consensus 220 g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 298 (415)
..++++|+..+.+.-.|.++++.+-.-. -..++.+-+. -+++++.|...|.+++.++.++.+. ..+..-..-=....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~-w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQI-WNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecchhhe-eeeeehhhhccceE
Confidence 4577888888888888988887653322 2233433333 3889999999999999999999743 33332221112334
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEE
Q 014934 299 WSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 299 ~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 352 (415)
..+++.++..|+.|+..+..|.++...+.+.+...+...+-+..|....|+++.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~ 154 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI 154 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEe
Confidence 578999999999999999999999999988754443334445566333355443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00095 Score=70.25 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=95.3
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC-----CCCeEEEEECCCcEEEEECCCC--eeeEE-ec--CCCccEEE
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-----RNTHLAVGTSHGKVQIWDASRC--KRVRT-ME--GHRLRVGA 255 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-----~g~~la~g~~dg~V~iwd~~~~--~~~~~-l~--~h~~~V~~ 255 (415)
.+.||-.|+..|+++....+.....|..++=.. +...-++|-.+..+..||.+-. +.+.. .. .......|
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 468999999999999999865544455554321 1335567888899999998753 23321 11 23445777
Q ss_pred EEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 256 LAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 256 l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
++-. ..+|++|+.+|.|++||-- +......+.+-..+|.+|..+.||++++..+ +..|.+++.
T Consensus 583 ~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEecCCceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 7776 5799999999999999943 3334455667789999999999999977655 456777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.022 Score=53.14 Aligned_cols=216 Identities=17% Similarity=0.163 Sum_probs=125.8
Q ss_pred CcEEEEEcCCeEEEEEC-CCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE-----------
Q 014934 178 HNVLAVGLGNCVYLWNA-CSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT----------- 245 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~-~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~----------- 245 (415)
++.|++|.++.|++++. ......+... ...|..+...++-+.|++- .||.+.++++........
T Consensus 7 ~~~L~vGt~~Gl~~~~~~~~~~~~~i~~---~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDLSDPSKPTRILK---LSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCCEEEEEecCCccceeEee---cceEEEEEEecccCEEEEE-cCCccEEEEchhhcccccccccccccccc
Confidence 46677776655999998 3344444443 3449999999987776664 459999999865433221
Q ss_pred ---ecCCCccEEEEE----eeCCEEEEEeCCCcEEEEECCCCC----ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 246 ---MEGHRLRVGALA----WSSSLLSSGSRDKSILQRDIRAQE----DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 246 ---l~~h~~~V~~l~----~~~~~l~sgs~dg~I~iwd~~~~~----~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
-......+...+ ..+...++....+.|.+|...... .....+. -...+.+++|. ++.|+.|..++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~- 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG- 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-
Confidence 011223344444 113344444455588888776532 1233333 34678899998 66777777555
Q ss_pred EEEEECCCCceeEEeccC------------CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE--EeeCCCCE
Q 014934 315 LFVWNQHSTQPVLKYCEH------------TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS--CMDTGSQV 380 (415)
Q Consensus 315 I~iwd~~~~~~~~~~~~h------------~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~--~~~~~~~V 380 (415)
..+.|+.++....-+... ..++..+... ++. +|++ .|..-.+.|. .|+... .+.-....
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e-~Ll~----~~~~g~fv~~-~G~~~r~~~i~W~~~p 231 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNE-FLLC----YDNIGVFVNK-NGEPSRKSTIQWSSAP 231 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-Cce-EEEE----ecceEEEEcC-CCCcCcccEEEcCCch
Confidence 888899877554333211 1223333333 344 4443 3455555555 444333 44444556
Q ss_pred EEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 381 ~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.++++ ...+|++. .++.|.||++.+++.
T Consensus 232 ~~~~~--~~pyli~~---~~~~iEV~~~~~~~l 259 (275)
T PF00780_consen 232 QSVAY--SSPYLIAF---SSNSIEVRSLETGEL 259 (275)
T ss_pred hEEEE--ECCEEEEE---CCCEEEEEECcCCcE
Confidence 66666 34577763 356799999998753
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0059 Score=60.07 Aligned_cols=185 Identities=13% Similarity=0.125 Sum_probs=105.3
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe--cC------CCccEEEEEee-----C-----CEEEEEeCC
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM--EG------HRLRVGALAWS-----S-----SLLSSGSRD 269 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l--~~------h~~~V~~l~~~-----~-----~~l~sgs~d 269 (415)
.+.|++++.| |=-++|+|..+|.+.|.|++....+..- .. ....|+++.|. + -.|++|...
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 5789999987 4458999999999999999877666542 22 34568889886 1 278999999
Q ss_pred CcEEEEECCC-C-Ccc----EEEeccccCCeEEEE-EeCCC--------------------CEEEEEeCCCcEEEEECCC
Q 014934 270 KSILQRDIRA-Q-EDF----VSKLSGHKSEVCGLK-WSYDN--------------------RELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 270 g~I~iwd~~~-~-~~~----~~~~~~h~~~V~~l~-~spdg--------------------~~lasg~~dg~I~iwd~~~ 322 (415)
|.+.+|.+.- . ... ......+...|..+. ++.+. ..++....+..++|+...+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 9999998752 1 111 112224556666554 32220 1234444567899999988
Q ss_pred CceeEEeccCCCcEEEEEEcC----CCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCC-----CEEEEEECCCCCeEE
Q 014934 323 TQPVLKYCEHTAAVKAIAWSP----HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS-----QVCNLVWSKNVNELV 393 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp----~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~-----~V~~l~~s~~~~~l~ 393 (415)
.+..++..........+.+-+ .+...|++-- .+|.|+++.+..-+.+..+.... .+....++++|+.++
T Consensus 245 ~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~--~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~ 322 (395)
T PF08596_consen 245 SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF--NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFY 322 (395)
T ss_dssp --EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE--TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEE
T ss_pred CcccceeeccccccceEEEEeecccCCceEEEEEE--CCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEE
Confidence 887776653333344455532 1233455444 69999999999988888776432 234567789998776
Q ss_pred EE
Q 014934 394 ST 395 (415)
Q Consensus 394 s~ 395 (415)
.+
T Consensus 323 ~~ 324 (395)
T PF08596_consen 323 WT 324 (395)
T ss_dssp E-
T ss_pred Ee
Confidence 64
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.043 Score=54.60 Aligned_cols=257 Identities=14% Similarity=0.058 Sum_probs=143.4
Q ss_pred CceeccCCCCCCCc-c--eeEeecCC-CcEEEEEc--CC----eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEE
Q 014934 155 PYKILDAPALQDDF-Y--LNLVDWSS-HNVLAVGL--GN----CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA 224 (415)
Q Consensus 155 p~~~ld~~~l~~~~-~--i~~l~ws~-~~~la~~~--d~----~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la 224 (415)
...+||...+..+. + +....+|| ++.||.+. +| .|+++|+.+++...-.. .. .....+.|.++++.|+
T Consensus 108 ~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~~-~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 108 EEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-EN-PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp -EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-EE-EESEEEEECTTSSEEE
T ss_pred eEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-cc-cccceEEEeCCCCEEE
Confidence 36677877777666 3 34578888 88888873 23 59999999997654321 11 1223499999998776
Q ss_pred EEECCC-----------cEEEEECCCCee--eEEecCCCcc--EEEEEee--CCEEEEEe-CC---CcEEEEECCCC---
Q 014934 225 VGTSHG-----------KVQIWDASRCKR--VRTMEGHRLR--VGALAWS--SSLLSSGS-RD---KSILQRDIRAQ--- 280 (415)
Q Consensus 225 ~g~~dg-----------~V~iwd~~~~~~--~~~l~~h~~~--V~~l~~~--~~~l~sgs-~d---g~I~iwd~~~~--- 280 (415)
....+. .|..|.+.+... ...+...... ...+..+ +++|+..+ .. ..+++.|+...
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~ 265 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP 265 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC
Confidence 665433 278888876532 2445443332 4556665 45555433 22 34788888874
Q ss_pred CccEEEeccccCCeEEEEEeCCCCEEEEEe---CCCcEEEEECCCCce---eEEeccCCCcEEEEEEcCCCCcEEEEEcC
Q 014934 281 EDFVSKLSGHKSEVCGLKWSYDNRELASGG---NDNRLFVWNQHSTQP---VLKYCEHTAAVKAIAWSPHLHGLLASGGG 354 (415)
Q Consensus 281 ~~~~~~~~~h~~~V~~l~~spdg~~lasg~---~dg~I~iwd~~~~~~---~~~~~~h~~~V~~l~~sp~~~~llasggg 354 (415)
......+......+....-+..+.+++... ..+.|...++.+... ...+-.|...+.-..+...+.+|++..--
T Consensus 266 ~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~ 345 (414)
T PF02897_consen 266 DAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE 345 (414)
T ss_dssp S-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEE
T ss_pred cCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEE
Confidence 222344443333443333233444444332 345788888887653 22454666644433444445567776541
Q ss_pred CCCCeEEEEECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEecC--CCcEEEEECCCCcc
Q 014934 355 TADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYS--QNQIIVWRYPTMSK 413 (415)
Q Consensus 355 ~~d~~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~--dg~I~vw~~~s~~~ 413 (415)
.....|+++++..+.....+. ..+.|..+...++++.+.....+. -+.+..||+.+++.
T Consensus 346 ~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 346 NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 124568999998455544444 334467777777777766543322 35788888887764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.022 Score=56.05 Aligned_cols=215 Identities=14% Similarity=0.134 Sum_probs=147.7
Q ss_pred cceeEeecCC-Cc-EEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC---CCcEEEEECCCCe
Q 014934 168 FYLNLVDWSS-HN-VLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS---HGKVQIWDASRCK 241 (415)
Q Consensus 168 ~~i~~l~ws~-~~-~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~---dg~V~iwd~~~~~ 241 (415)
++-+.++.++ ++ +.+... .+.|.+.|..+.........+. ....++++++++.+.++.. ++.|.+.|..+.+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 4555666666 44 444443 5889999988887777765553 7789999999988877765 6889999999988
Q ss_pred eeEEecCCCccEEEEEee--CCEEEE-EeCCCcEEEEECCCCCccEEE----eccccCCeEEEEEeCCCCEEEEEeCC--
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSS-GSRDKSILQRDIRAQEDFVSK----LSGHKSEVCGLKWSYDNRELASGGND-- 312 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~s-gs~dg~I~iwd~~~~~~~~~~----~~~h~~~V~~l~~spdg~~lasg~~d-- 312 (415)
.+.....-..+ ..+++. +..++. -..++.|.+.|..... .... ...-...-+.+.++|+|..+.+....
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~-v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS-VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc-eeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence 88775543334 677777 454444 4578899999976554 2210 11222345779999999976654433
Q ss_pred -CcEEEEECCCCceeEEeccCCC-cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCC----EEEEEEC
Q 014934 313 -NRLFVWNQHSTQPVLKYCEHTA-AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ----VCNLVWS 386 (415)
Q Consensus 313 -g~I~iwd~~~~~~~~~~~~h~~-~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~----V~~l~~s 386 (415)
+.+.+.|..++.....-..-.. ....++.+|+|..+.+.-. ..+.+.+-|..+......+..+.. +..+++.
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~--~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~ 307 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS--QGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAIS 307 (381)
T ss_pred CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec--CCCeEEEEeCCCCceeeeecccccccccceeccce
Confidence 5899999988866554111111 4567899999998887765 578899999999888777654433 5555554
Q ss_pred CC
Q 014934 387 KN 388 (415)
Q Consensus 387 ~~ 388 (415)
+.
T Consensus 308 ~~ 309 (381)
T COG3391 308 PL 309 (381)
T ss_pred ee
Confidence 43
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0023 Score=61.50 Aligned_cols=141 Identities=15% Similarity=0.216 Sum_probs=95.6
Q ss_pred CcEEEEEcC-----------CeEEEEECCCC-----CeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 178 HNVLAVGLG-----------NCVYLWNACSS-----KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 178 ~~~la~~~d-----------~~V~iwd~~~~-----~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
..+|++|.. |.|+++++... ++..+......+.|++++-. +| +|++|. .+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence 467777732 77999999884 44444444557899999877 44 455544 4689999997766
Q ss_pred -eeEEec-CCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEec--cccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 014934 242 -RVRTME-GHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS--GHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (415)
Q Consensus 242 -~~~~l~-~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~lasg~~dg~I~i 317 (415)
....-. .....+.++...+++++.|...+.+.++..+.....+..+. .....+.++.+-++++.++.+..+|.|.+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEE
Confidence 333222 23347888888899999999999888875554332222222 23445888888867789999999999999
Q ss_pred EECC
Q 014934 318 WNQH 321 (415)
Q Consensus 318 wd~~ 321 (415)
+...
T Consensus 199 l~~~ 202 (321)
T PF03178_consen 199 LRYN 202 (321)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 8865
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0014 Score=65.38 Aligned_cols=162 Identities=12% Similarity=0.113 Sum_probs=90.9
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEE-ECCCCCccEE
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQR-DIRAQEDFVS 285 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iw-d~~~~~~~~~ 285 (415)
......+.++|+|+++++ +.+|.-.|+.....+... .+.....+|. .+.+++-...+.|.++ ++.... ..
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~--~k 103 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEV--VK 103 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-T--T-
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCccEEEEECCCeEEEEEcCcccc--ce
Confidence 345789999999999998 567888888855444332 2334557777 4778888888999996 443222 11
Q ss_pred EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 286 ~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
.+.. ...+..|-. |.+|+..+.+ .|.+||+.+++.+.++... +|..+.|++++..+.+.+ +..+.+++.
T Consensus 104 ~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----~~~i~il~~ 172 (443)
T PF04053_consen 104 SIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----KDSIYILKY 172 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-----S-SEEEEEE
T ss_pred EEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe----CCeEEEEEe
Confidence 2221 112333332 8888887665 7999999999999998532 499999999988444443 567777765
Q ss_pred CCC-----------cEEEEeeC-CCCEEEEEECCC
Q 014934 366 TTN-----------THLSCMDT-GSQVCNLVWSKN 388 (415)
Q Consensus 366 ~t~-----------~~~~~~~~-~~~V~~l~~s~~ 388 (415)
... ..+..+.. ...|.+..|..+
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 433 12333332 566777777665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.026 Score=51.78 Aligned_cols=193 Identities=12% Similarity=0.087 Sum_probs=124.1
Q ss_pred ceeccCCCCCCCcceeEeecCC-CcEEEEE-cC--CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCc
Q 014934 156 YKILDAPALQDDFYLNLVDWSS-HNVLAVG-LG--NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGK 231 (415)
Q Consensus 156 ~~~ld~~~l~~~~~i~~l~ws~-~~~la~~-~d--~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~ 231 (415)
++++..-......+...+.+.. +.++-+. .- ..|+.+|..+++......+...----.++.. +++.....-.+|.
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence 3555443334456777888844 4443333 22 4799999999999888877554333444444 2333444457899
Q ss_pred EEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccc-----cCCeEEEEEeCCCCEE
Q 014934 232 VQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGH-----KSEVCGLKWSYDNREL 306 (415)
Q Consensus 232 V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-----~~~V~~l~~spdg~~l 306 (415)
..+||..+.+.+.++. ..+.-+.++.++..|+.......|+++|..+.+ ....+... -..++-|.|- +|...
T Consensus 112 ~f~yd~~tl~~~~~~~-y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~-~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFP-YPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFK-EVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEEETTTTEEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-S-EEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEEccccceEEEEEe-cCCcceEEEcCCCEEEEECCccceEEECCcccc-eEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 9999999999998886 346778888888888888888889999988765 23333321 1245667776 67777
Q ss_pred EEEeCCCcEEEEECCCCceeEEecc------------C---CCcEEEEEEcCCCCcEEEEE
Q 014934 307 ASGGNDNRLFVWNQHSTQPVLKYCE------------H---TAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~~~~~~~------------h---~~~V~~l~~sp~~~~llasg 352 (415)
|=.=....|...|..+|+.+..+.- + ..-.+.|||.|....++++|
T Consensus 189 ANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 7777778899999999988776521 1 23468999999999899988
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0007 Score=68.43 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=97.0
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec-CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccE
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFV 284 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~ 284 (415)
...|.--+++..+++++.|+..|.|.+|+-..++....-. +-.+.+..+..+ ..+++.|+..|.|.++-+.......
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3445555667789999999999999999987665433222 223333444444 4678888899999999877643221
Q ss_pred EEe-----ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC----ceeEEeccCCCcEEEEEEcCCCCcEEEEE
Q 014934 285 SKL-----SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST----QPVLKYCEHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 285 ~~~-----~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~sp~~~~llasg 352 (415)
..+ ..|+..|++++|++++..|.+|...|+|..-.+.+. -..+.+..-...|..|... +.+||++.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVSt 187 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVST 187 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhh
Confidence 111 247788999999999999999999999998888762 1222333345567666655 33566654
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.046 Score=53.80 Aligned_cols=216 Identities=15% Similarity=0.151 Sum_probs=139.2
Q ss_pred EEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC-CCcEEEEECCCCeeeEEecCCCccEEEEEee--C-CEEE
Q 014934 189 VYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRCKRVRTMEGHRLRVGALAWS--S-SLLS 264 (415)
Q Consensus 189 V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~-dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~-~~l~ 264 (415)
+.+++..+........++ .....+...++|..+.+... ...+...+................-..++.+ + +..+
T Consensus 13 ~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLG--RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecC--CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence 667776666665555432 36778888888865554432 2245555544222111111111223344554 3 3566
Q ss_pred EEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC---CCcEEEEECCCCceeEEeccCCCcEEEEEE
Q 014934 265 SGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN---DNRLFVWNQHSTQPVLKYCEHTAAVKAIAW 341 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~---dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 341 (415)
....++.|.+.|............+. ....++++|+++.+.++.. ++.+.+.|..+.+.+.....-..+ ..+++
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~ 167 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAV 167 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEE
Confidence 66667899999977665322222232 6678999999988776554 789999999988887775433334 88999
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECCCCcEEE-----EeeCCCCEEEEEECCCCCeEEEEEecC-CCcEEEEECCCC
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLS-----CMDTGSQVCNLVWSKNVNELVSTHGYS-QNQIIVWRYPTM 411 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~t~~~~~-----~~~~~~~V~~l~~s~~~~~l~s~~g~~-dg~I~vw~~~s~ 411 (415)
.|+|..++++.. .++.|.+.|..+..... .+..+..-..+.++++|.++.++-..+ ++.+.+.|..+.
T Consensus 168 ~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 168 DPDGNKVYVTNS--DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred CCCCCeEEEEec--CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence 999998888775 79999999987766553 233445567899999999776653222 257777777654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0043 Score=48.86 Aligned_cols=101 Identities=22% Similarity=0.261 Sum_probs=71.9
Q ss_pred eEEEEEeC---CC-CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc
Q 014934 294 VCGLKWSY---DN-RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (415)
Q Consensus 294 V~~l~~sp---dg-~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~ 369 (415)
|++|++.. || +.|++|+.|..|+||+-. ..+.++.. ...|..++-...+. ++.+- .+|+|-+|+- ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~--F~Y~l--~NGTVGvY~~--~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGR--FAYAL--ANGTVGVYDR--SQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCE--EEEEe--cCCEEEEEeC--cc
Confidence 56666654 32 579999999999999854 56777744 55788887776654 44433 6899999976 45
Q ss_pred EEEEeeCCCCEEEEEECCCC----CeEEEEEecCCCcEEE
Q 014934 370 HLSCMDTGSQVCNLVWSKNV----NELVSTHGYSQNQIIV 405 (415)
Q Consensus 370 ~~~~~~~~~~V~~l~~s~~~----~~l~s~~g~~dg~I~v 405 (415)
.+..++.+.++.++++..-. .+|++ |.++|.|-+
T Consensus 73 RlWRiKSK~~~~~~~~~D~~gdG~~eLI~--GwsnGkve~ 110 (111)
T PF14783_consen 73 RLWRIKSKNQVTSMAFYDINGDGVPELIV--GWSNGKVEV 110 (111)
T ss_pred eeeeeccCCCeEEEEEEcCCCCCceEEEE--EecCCeEEe
Confidence 56777777788887665433 37888 888998754
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0014 Score=67.40 Aligned_cols=69 Identities=16% Similarity=0.309 Sum_probs=58.8
Q ss_pred ceeEeecCC-CcEEEEEcC-CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC
Q 014934 169 YLNLVDWSS-HNVLAVGLG-NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d-~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~ 238 (415)
-+.+++|+| .-+|+.|.+ +.+.+|...+.+...+.. .|...|..+.||++|..|.++..-|.|.+|...
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeecc-CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 356789999 667888854 889999988877655554 889999999999999999999999999999875
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0032 Score=67.39 Aligned_cols=133 Identities=22% Similarity=0.326 Sum_probs=81.9
Q ss_pred EEEEEcCCCCeEEEE-----ECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC--CEEEEE---eCCCcEEEEECCCCC
Q 014934 212 CSVGWANRNTHLAVG-----TSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSG---SRDKSILQRDIRAQE 281 (415)
Q Consensus 212 ~~v~~sp~g~~la~g-----~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~~l~sg---s~dg~I~iwd~~~~~ 281 (415)
++|.|--||+++|+. .....|++||-+ +..-.+-....+.=.+++|-| ..+++- +.|+.|.++.-..-.
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 469999999999993 333689999976 433322222334445788874 555544 345578888754322
Q ss_pred c--cEEEeccccCCeEEEEEeCCCCEEEE---EeCCCcEEEEECCCCceeEE--eccCCCcEEEEEEcCCCCc
Q 014934 282 D--FVSKLSGHKSEVCGLKWSYDNRELAS---GGNDNRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHG 347 (415)
Q Consensus 282 ~--~~~~~~~h~~~V~~l~~spdg~~las---g~~dg~I~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~ 347 (415)
+ ....+.....+|..++|+.++..||+ ......|.+|-+.+.....+ +.-.+... +.|+|....
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~ 348 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEK 348 (1265)
T ss_pred ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCce
Confidence 1 12222333445899999999999998 55555699999987643322 11122222 777775443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.028 Score=50.74 Aligned_cols=140 Identities=11% Similarity=0.065 Sum_probs=89.5
Q ss_pred cEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCC--CccEEE
Q 014934 179 NVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH--RLRVGA 255 (415)
Q Consensus 179 ~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h--~~~V~~ 255 (415)
.++..| ..+.+.-.|..+|++.-...++ ..+-+-+.- -|++++.|+..|.+.+.+..++.....+..- -..-..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 445555 4577788899998876555444 333332222 5788999999999999999999766555421 111234
Q ss_pred EEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 256 LAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 256 l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
+++++..+.+|+.|++.+..|.++.. .+.+.+.....-.+-+..|-...|..+...|.|.--..+.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccc-eEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 56778999999999999999999887 4555554434344445556233333444445444444433
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.053 Score=55.71 Aligned_cols=235 Identities=15% Similarity=0.133 Sum_probs=130.0
Q ss_pred CCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC--CCCeEEEEEC------CCcEEEEECCCCeeeEEecC
Q 014934 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTS------HGKVQIWDASRCKRVRTMEG 248 (415)
Q Consensus 177 ~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp--~g~~la~g~~------dg~V~iwd~~~~~~~~~l~~ 248 (415)
.+.+++...++.|+-.|..+|+..-.........-..+.-+| .+..++++.. +|.|.-+|.++++.+=.+..
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 345666667899999999999987655432111101111122 1335556543 68899999999887654432
Q ss_pred CCc-------------------------------cEE-EEEeeC--CEEEEEeCC-----C-----------cEEEEECC
Q 014934 249 HRL-------------------------------RVG-ALAWSS--SLLSSGSRD-----K-----------SILQRDIR 278 (415)
Q Consensus 249 h~~-------------------------------~V~-~l~~~~--~~l~sgs~d-----g-----------~I~iwd~~ 278 (415)
-.. .+. .+++++ ++++.+..+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 100 011 122332 345554421 2 56777888
Q ss_pred CCCccEEEecc--cc-------CCeEEEEEeCCCC---EEEEEeCCCcEEEEECCCCceeEE--ecc----------CCC
Q 014934 279 AQEDFVSKLSG--HK-------SEVCGLKWSYDNR---ELASGGNDNRLFVWNQHSTQPVLK--YCE----------HTA 334 (415)
Q Consensus 279 ~~~~~~~~~~~--h~-------~~V~~l~~spdg~---~lasg~~dg~I~iwd~~~~~~~~~--~~~----------h~~ 334 (415)
+++. .-.++. |. ....-+.+..+|+ .++.+..+|.+++.|.++++++.. +.. ...
T Consensus 280 TG~~-~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g 358 (527)
T TIGR03075 280 TGKI-KWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTG 358 (527)
T ss_pred cCCE-EEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCC
Confidence 7763 222222 21 1111122334666 778899999999999999987622 100 000
Q ss_pred -cE----------------------------EEEEEcCCCCcEEEEEcC------------------------------C
Q 014934 335 -AV----------------------------KAIAWSPHLHGLLASGGG------------------------------T 355 (415)
Q Consensus 335 -~V----------------------------~~l~~sp~~~~llasggg------------------------------~ 355 (415)
++ ..++++|....+++-.+- .
T Consensus 359 ~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~ 438 (527)
T TIGR03075 359 RPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDD 438 (527)
T ss_pred CCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCC
Confidence 00 114556654433322210 0
Q ss_pred CCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 356 ADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 356 ~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
.-+.|.-+|+.+|+.+.......+...-...-.+..++. +..+|.++.+|..+++.|
T Consensus 439 ~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~--g~~~G~l~a~D~~TGe~l 495 (527)
T TIGR03075 439 HMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFY--GTLEGYFKAFDAKTGEEL 495 (527)
T ss_pred CceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEE--ECCCCeEEEEECCCCCEe
Confidence 125688889999988877764433211112224445555 677999999999999875
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.011 Score=57.50 Aligned_cols=205 Identities=15% Similarity=0.198 Sum_probs=116.7
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec-CC---------------
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME-GH--------------- 249 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~-~h--------------- 249 (415)
.+.++|||+.+++...+... ...+....|+|+|+.+|... ++.|.+++..++...+.-. +-
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred ceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 46799999999887776642 56889999999999999875 5689999987764443211 10
Q ss_pred -CccEEEEEeeC--CEEEEEeCC-C-----------------------------------cEEEEECCCCCccE-EEe--
Q 014934 250 -RLRVGALAWSS--SLLSSGSRD-K-----------------------------------SILQRDIRAQEDFV-SKL-- 287 (415)
Q Consensus 250 -~~~V~~l~~~~--~~l~sgs~d-g-----------------------------------~I~iwd~~~~~~~~-~~~-- 287 (415)
-+.-..+.|+| +.|+....| . .+.++|+.+++... ...
T Consensus 99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~ 178 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNS 178 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HH
T ss_pred ccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccc
Confidence 01123455663 344333211 1 13445665554211 111
Q ss_pred -ccccCCeEEEEEeCCCCEEEEE--eCC---CcEEEEECCCCceeEEecc-CCCcE---EEEEEc-CCCCcEEEEEcCCC
Q 014934 288 -SGHKSEVCGLKWSYDNRELASG--GND---NRLFVWNQHSTQPVLKYCE-HTAAV---KAIAWS-PHLHGLLASGGGTA 356 (415)
Q Consensus 288 -~~h~~~V~~l~~spdg~~lasg--~~d---g~I~iwd~~~~~~~~~~~~-h~~~V---~~l~~s-p~~~~llasggg~~ 356 (415)
..-...+..+.|.++++.|+.. ..+ -.+.+.|..++.....+.. ..+.| ....|. +++..++.... .
T Consensus 179 ~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~--~ 256 (353)
T PF00930_consen 179 LNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE--R 256 (353)
T ss_dssp HHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE--T
T ss_pred cCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE--c
Confidence 1223457889999999844442 222 2477788877654333322 22222 245554 77766666665 4
Q ss_pred CC--eEEEEECCCCcEEEEeeCCCCEEE-EEECCCCCeEEEE
Q 014934 357 DR--CIRFWNTTTNTHLSCMDTGSQVCN-LVWSKNVNELVST 395 (415)
Q Consensus 357 d~--~I~iwd~~t~~~~~~~~~~~~V~~-l~~s~~~~~l~s~ 395 (415)
+| .|.+++...+.........-.|.. +.|+++++.|..+
T Consensus 257 ~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~ 298 (353)
T PF00930_consen 257 DGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFT 298 (353)
T ss_dssp TSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEE
T ss_pred CCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEE
Confidence 55 466667766664433334455755 7889998877665
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0074 Score=59.97 Aligned_cols=178 Identities=16% Similarity=0.232 Sum_probs=108.7
Q ss_pred eeEeecCC-CcEEEEE---cCC--eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCc--EEEEECCCC
Q 014934 170 LNLVDWSS-HNVLAVG---LGN--CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGK--VQIWDASRC 240 (415)
Q Consensus 170 i~~l~ws~-~~~la~~---~d~--~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~--V~iwd~~~~ 240 (415)
+..-.|++ +..++.. ..+ .++++++.+++...+..+ .+.-..-.|+|||++||... .||. |.+.|+...
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc--CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 34456887 4433333 233 599999999987777753 34555678999999877764 4665 555566655
Q ss_pred eeeEEecCCCccEEEEEee--CC-EEEEEeCCCc--EEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-CCc
Q 014934 241 KRVRTMEGHRLRVGALAWS--SS-LLSSGSRDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-DNR 314 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~-~l~sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-dg~ 314 (415)
. ...+....+.-+.=.|+ ++ ++++.++.|. |.++|...... ..+......-..-.|+|||++|+..+. +|.
T Consensus 273 ~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~ 349 (425)
T COG0823 273 N-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ 349 (425)
T ss_pred c-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeeccCCCCcCccCCCCCCEEEEEeccCCc
Confidence 5 33344333323344555 44 4555556664 66667766653 333322222237789999999988764 344
Q ss_pred --EEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEc
Q 014934 315 --LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 315 --I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 353 (415)
|.+.|+.++..+..+ .+......-.|.+++..++.+++
T Consensus 350 ~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 350 WDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred eeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEecc
Confidence 777777766544444 34444556788899987777664
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.09 Score=52.29 Aligned_cols=196 Identities=9% Similarity=0.072 Sum_probs=109.5
Q ss_pred eEEEEEcCCCCeEEEEE-CCC----cEEEEECCCCeeeEEecCCCccEEEEEeeC--CEEEEEeCCC-----------cE
Q 014934 211 VCSVGWANRNTHLAVGT-SHG----KVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDK-----------SI 272 (415)
Q Consensus 211 V~~v~~sp~g~~la~g~-~dg----~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~~l~sgs~dg-----------~I 272 (415)
+..+.++|+|++||.+- ..| .|+++|+.+++.+...-... ....+.|.+ ..|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 33578899999999873 344 49999999997765321111 122389984 4554444332 37
Q ss_pred EEEECCCCCcc-EEEeccccCC--eEEEEEeCCCCEEEEEeC---C-CcEEEEECCCC----ceeEEeccCCCcEEE-EE
Q 014934 273 LQRDIRAQEDF-VSKLSGHKSE--VCGLKWSYDNRELASGGN---D-NRLFVWNQHST----QPVLKYCEHTAAVKA-IA 340 (415)
Q Consensus 273 ~iwd~~~~~~~-~~~~~~h~~~--V~~l~~spdg~~lasg~~---d-g~I~iwd~~~~----~~~~~~~~h~~~V~~-l~ 340 (415)
+.|.+.+.... ...+...... ...+..++|+++|+.... + ..+++.|+..+ .....+......+.. +.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888876543 2334433322 568889999999875332 2 46888898874 233444444444443 43
Q ss_pred EcCCCCcEEEEEcCCCCCeEEEEECCCCcE---E-EEeeCCCCEEEEEECCCCCeEEEEEecCCC--cEEEEECC
Q 014934 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTH---L-SCMDTGSQVCNLVWSKNVNELVSTHGYSQN--QIIVWRYP 409 (415)
Q Consensus 341 ~sp~~~~llasggg~~d~~I~iwd~~t~~~---~-~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg--~I~vw~~~ 409 (415)
.. .+..++.+..+...+.|.-.++..... . ..+.+...+.-..+...+.+|+.. ...++ .|.++++.
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~-~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLS-YRENGSSRLRVYDLD 357 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEE-EEETTEEEEEEEETT
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEE-EEECCccEEEEEECC
Confidence 33 444445554444567888888887652 2 223344433333333445556653 22333 68888877
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.06 Score=53.05 Aligned_cols=80 Identities=11% Similarity=0.072 Sum_probs=51.9
Q ss_pred CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC--CCCEEEEEEC----------------CCCCeEE
Q 014934 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--GSQVCNLVWS----------------KNVNELV 393 (415)
Q Consensus 332 h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~--~~~V~~l~~s----------------~~~~~l~ 393 (415)
....+.+|+.+|++. +.|+.. .=|.|.++|+.++..+...+. ..++.=+... +....++
T Consensus 306 ~~R~~~~i~~sP~~~-laA~tD--slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 306 SKREGESICLSPSGR-LAAVTD--SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CCceEEEEEECCCCC-EEEEEc--CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 344578899999976 666654 579999999999887766542 1111111111 1112344
Q ss_pred EEEecCCCcEEEEECCCCccc
Q 014934 394 STHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s~~~l 414 (415)
+.+.-.-|.|.||.+..+.++
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEEeccCCeEEEEecCCCCEE
Confidence 445667899999999998775
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00081 Score=67.19 Aligned_cols=93 Identities=17% Similarity=0.335 Sum_probs=78.9
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEE-EEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc
Q 014934 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVK-AIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (415)
Q Consensus 291 ~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~-~l~~sp~~~~llasggg~~d~~I~iwd~~t~~ 369 (415)
...|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|+|+ ++|.|= .||+|++.|+.+|.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~--kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGF--KDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEe--cCCeEEEEEccCCC
Confidence 3467889999999999999999999999987 777888876777777 999999987 888776 89999999999999
Q ss_pred EEEE--eeCCCCEEEEEECC
Q 014934 370 HLSC--MDTGSQVCNLVWSK 387 (415)
Q Consensus 370 ~~~~--~~~~~~V~~l~~s~ 387 (415)
.+.. +-....|..+.|++
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 8877 34566788888863
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.011 Score=61.09 Aligned_cols=215 Identities=14% Similarity=0.133 Sum_probs=121.9
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC-C-----cEEEEECCCCe--eeEEecCCCccEEEEEe
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-G-----KVQIWDASRCK--RVRTMEGHRLRVGALAW 258 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d-g-----~V~iwd~~~~~--~~~~l~~h~~~V~~l~~ 258 (415)
..|..||..+++......+.....-.+++.. +|...++|+.+ | .+..||..+.+ .+..+............
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 4688999999887777766554445555554 56788889888 3 57888887654 33334444445555566
Q ss_pred eCCEEEEEeCCCc-----EEEEECCCCCccEEEeccccCCeEEEEE-eCCCCEEEEEeCCC------cEEEEECCCCcee
Q 014934 259 SSSLLSSGSRDKS-----ILQRDIRAQEDFVSKLSGHKSEVCGLKW-SYDNRELASGGNDN------RLFVWNQHSTQPV 326 (415)
Q Consensus 259 ~~~~l~sgs~dg~-----I~iwd~~~~~~~~~~~~~h~~~V~~l~~-spdg~~lasg~~dg------~I~iwd~~~~~~~ 326 (415)
.+.+.++|+.||. |-.||.++.+- ...........+... .-+|.+.++||.++ .+..||..+.+..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W--~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKW--TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcc--cccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 6889999999974 77888876651 222212122222222 22688888888654 5778887766432
Q ss_pred E--EeccCCCcEEEEEEcCCCCcEEEEEcCCCCC-----eEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecC
Q 014934 327 L--KYCEHTAAVKAIAWSPHLHGLLASGGGTADR-----CIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 327 ~--~~~~h~~~V~~l~~sp~~~~llasggg~~d~-----~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
. .+..-..... ++.- +..|++.|| .|+ +|..||..+.+-...-.......++.....+..+.+. |+.
T Consensus 458 ~~~~M~~~R~~~g-~a~~--~~~iYvvGG--~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~v-GG~ 531 (571)
T KOG4441|consen 458 LIAPMNTRRSGFG-VAVL--NGKIYVVGG--FDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAV-GGF 531 (571)
T ss_pred ecCCcccccccce-EEEE--CCEEEEECC--ccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEE-ecc
Confidence 2 2211111111 2222 235888886 454 3777888877654332222233333333333344433 545
Q ss_pred CC-----cEEEEECCC
Q 014934 400 QN-----QIIVWRYPT 410 (415)
Q Consensus 400 dg-----~I~vw~~~s 410 (415)
|| +|..||..+
T Consensus 532 ~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 532 DGNNNLNTVECYDPET 547 (571)
T ss_pred cCccccceeEEcCCCC
Confidence 54 566665443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.015 Score=60.09 Aligned_cols=212 Identities=11% Similarity=0.089 Sum_probs=107.9
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC------CcEEEEECCCCee--eEEecCCCccEEEEEee
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH------GKVQIWDASRCKR--VRTMEGHRLRVGALAWS 259 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d------g~V~iwd~~~~~~--~~~l~~h~~~V~~l~~~ 259 (415)
.+..||..+++...+..+.....-.+++. -++...++|+.+ ..|..||..+..- +..+.............
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 57789998887766554332211122222 367777888753 3478889876542 22222222334445556
Q ss_pred CCEEEEEeCCC-----cEEEEECCCCCccEEEeccccC---CeEEEEEeCCCCEEEEEeCCC------------------
Q 014934 260 SSLLSSGSRDK-----SILQRDIRAQEDFVSKLSGHKS---EVCGLKWSYDNRELASGGNDN------------------ 313 (415)
Q Consensus 260 ~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~h~~---~V~~l~~spdg~~lasg~~dg------------------ 313 (415)
+.+.+.||.++ .+..||..+.. ......... ....+. -+|.+.+.||.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~--W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDK--WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCe--EEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence 77788888764 47889987654 122211111 111222 2678888887653
Q ss_pred -----cEEEEECCCCcee--EEeccCCCcEEEEEEcCCCCcEEEEEcCCC----CCeEEEEECCC-CcEE--EEeeCCCC
Q 014934 314 -----RLFVWNQHSTQPV--LKYCEHTAAVKAIAWSPHLHGLLASGGGTA----DRCIRFWNTTT-NTHL--SCMDTGSQ 379 (415)
Q Consensus 314 -----~I~iwd~~~~~~~--~~~~~h~~~V~~l~~sp~~~~llasggg~~----d~~I~iwd~~t-~~~~--~~~~~~~~ 379 (415)
.+..||..+.+-. ..+.........+++ ++ .+++.||.+. ...+..||..+ .+-. ..+...-.
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 4777887765432 111111111111222 23 4778775211 13467899887 4432 22221111
Q ss_pred EEEEEECCCCCeEEEEEecCCC--cEEEEECCC
Q 014934 380 VCNLVWSKNVNELVSTHGYSQN--QIIVWRYPT 410 (415)
Q Consensus 380 V~~l~~s~~~~~l~s~~g~~dg--~I~vw~~~s 410 (415)
..+++.. +++..++ |+.++ .+..||..+
T Consensus 505 ~~~~~~~-~~~iyv~--Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 505 ALHTILH-DNTIMML--HCYESYMLQDTFNVYT 534 (557)
T ss_pred cceeEEE-CCEEEEE--eeecceeehhhcCccc
Confidence 1222222 4454454 55566 566676654
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0035 Score=61.65 Aligned_cols=138 Identities=14% Similarity=0.124 Sum_probs=97.7
Q ss_pred EEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC---------CEEEEEeCCCcEEEEECCCCCc-cEEEecccc-
Q 014934 223 LAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---------SLLSSGSRDKSILQRDIRAQED-FVSKLSGHK- 291 (415)
Q Consensus 223 la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~---------~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~- 291 (415)
|..+.....++-.|++.|+.+....-+.. |.-+.+.+ ..-+.|-.|..|.-||.|-... .+...++|.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 34455556688889999999998887666 55555542 2345677788899999996653 222333332
Q ss_pred ---CCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 292 ---SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 292 ---~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
....|.+-..+ .++|+|+.+|.|++||--..+.-.-+.+-..+|+.|..+.+|.++|+++ +..+.+.++.
T Consensus 428 ~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc----~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC----KTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec----ccEEEEEEEe
Confidence 23455554444 4899999999999999743344445667788999999999999999987 6777777764
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.11 Score=49.38 Aligned_cols=199 Identities=14% Similarity=0.079 Sum_probs=115.8
Q ss_pred eEeecCC-CcEEEEEc---CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC-CCeeeEE
Q 014934 171 NLVDWSS-HNVLAVGL---GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS-RCKRVRT 245 (415)
Q Consensus 171 ~~l~ws~-~~~la~~~---d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~-~~~~~~~ 245 (415)
+.+..+. ++++.+.. ..+|-+.|+..+++...+... +++.-.-+. ...+.+-|.||.+.-..+. .|+....
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecC--CCceEEEecCCceEEEEECCCCCEeEe
Confidence 3445555 55555552 357888888888887766532 322222222 2357777899999988886 4444322
Q ss_pred e----cCCCccEE-EEEee--CCEEEEEeCCCcEEEEECCCCCcc-EEEeccc----------cCCeEEEEEeCCCCEEE
Q 014934 246 M----EGHRLRVG-ALAWS--SSLLSSGSRDKSILQRDIRAQEDF-VSKLSGH----------KSEVCGLKWSYDNRELA 307 (415)
Q Consensus 246 l----~~h~~~V~-~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~h----------~~~V~~l~~spdg~~la 307 (415)
. ..-..++. .-++. +..++--+.+|.|+--|+...... ...+.-- .+.-.-+++++..+.|.
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 1 11112221 22222 345666788999998888766521 1111100 12234477777665555
Q ss_pred EEe---CCC-------cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEE-EEcCCCCCeEEEEECCCCcEEEEeeC
Q 014934 308 SGG---NDN-------RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLA-SGGGTADRCIRFWNTTTNTHLSCMDT 376 (415)
Q Consensus 308 sg~---~dg-------~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla-sggg~~d~~I~iwd~~t~~~~~~~~~ 376 (415)
+.- .++ .|.++|+.+++.+.++.. ...+.+|+.+.+.+-+|. ... .++.|.+||..+|+.+..++.
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~--~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSA--GDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEET--TTTEEEEEETTT--EEEEE--
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcC--CCCeEEEEeCcCCcEEeehhc
Confidence 421 122 589999999999998853 345778999988775554 443 589999999999999998874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00057 Score=41.49 Aligned_cols=37 Identities=30% Similarity=0.609 Sum_probs=32.8
Q ss_pred cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 014934 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319 (415)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd 319 (415)
....+..|...|.++.|++++.++++++.|+.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3456667888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.2 Score=48.51 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=112.3
Q ss_pred ceeEeecCC-C-cEEEEEc-C--CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 169 YLNLVDWSS-H-NVLAVGL-G--NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 169 ~i~~l~ws~-~-~~la~~~-d--~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
|.+-=+|.+ + .+|.++. + ..+++.|+.+++..++..... +......++++.+.++-......|+-.|+.+.+..
T Consensus 37 YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g-~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG-DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE
T ss_pred eecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC-CCccceEEecCCCeEEEEECCCeEEEEECCcCcEE
Confidence 333445666 4 4454442 3 479999999999998887322 33335677888888776666678999999998766
Q ss_pred EEecCCCccEEEEEee---CCEEEEEeC-----------------------CCcEEEEECCCCCccEEEeccccCCeEEE
Q 014934 244 RTMEGHRLRVGALAWS---SSLLSSGSR-----------------------DKSILQRDIRAQEDFVSKLSGHKSEVCGL 297 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~---~~~l~sgs~-----------------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 297 (415)
..+.....-+....|. ....++|.. ...|.-.|+.+++ ...+..-...+..+
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~wlgH~ 193 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDWLGHV 193 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EEEE
T ss_pred EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCccccCc
Confidence 6666556666555553 222233211 1235666777765 34444445567889
Q ss_pred EEeCCCC-EEEEEeC---CCc-EEEEECCC-CceeEEeccCC--CcEEEEEEcCCCCcEEEEEc--CCCCCeEEEEECCC
Q 014934 298 KWSYDNR-ELASGGN---DNR-LFVWNQHS-TQPVLKYCEHT--AAVKAIAWSPHLHGLLASGG--GTADRCIRFWNTTT 367 (415)
Q Consensus 298 ~~spdg~-~lasg~~---dg~-I~iwd~~~-~~~~~~~~~h~--~~V~~l~~sp~~~~llasgg--g~~d~~I~iwd~~t 367 (415)
.|+|... +|+-|-+ +.. -+||-+++ +.....+..|. ..+.-=-|.|+|..+..-+. |..+..|.-+|..+
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence 9999544 4444432 221 25555432 33333333333 23445579999987665332 22567888999999
Q ss_pred CcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 368 NTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 368 ~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
++....... ..-..+.-++||+.++-
T Consensus 274 ~~~~~~~~~-p~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 274 GERRRLMEM-PWCSHFMSSPDGKLFVG 299 (386)
T ss_dssp --EEEEEEE--SEEEEEE-TTSSEEEE
T ss_pred CCceEEEeC-CceeeeEEcCCCCEEEe
Confidence 876443322 24556777889887665
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.096 Score=52.06 Aligned_cols=182 Identities=12% Similarity=0.156 Sum_probs=98.3
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCC---CCCe-----EEEEEcCCCCeEEEEECCCcEEEEECCC
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGI---DDSV-----CSVGWANRNTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~---~~~V-----~~v~~sp~g~~la~g~~dg~V~iwd~~~ 239 (415)
.+-.+.|.. .+++++..+|.++++|..... .+.++. ...| ....+..+| +|+-+.++.+.+..-..
T Consensus 82 ~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~ 156 (410)
T PF04841_consen 82 RIVGMGWTDDEELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNID 156 (410)
T ss_pred CEEEEEECCCCeEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCcc
Confidence 477889988 788888899999999986433 222211 1122 222333355 33334555554443222
Q ss_pred Ce-eeEEec---CCCc------cEEE-EEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEE
Q 014934 240 CK-RVRTME---GHRL------RVGA-LAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306 (415)
Q Consensus 240 ~~-~~~~l~---~h~~------~V~~-l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 306 (415)
.. ..+.+. .... .+.. ..+. ....+....++.+.+.+-.... .+. ..+++..|+.||+|+++
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~----~i~-~~~~i~~iavSpng~~i 231 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK----QID-SDGPIIKIAVSPNGKFI 231 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc----ccc-CCCCeEEEEECCCCCEE
Confidence 11 111111 1000 0000 0111 2233333444445533322111 111 23579999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccC-CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 307 ASGGNDNRLFVWNQHSTQPVLKYCEH-TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
|.-..+|.+.|.+..-.+.+..+... ......+.|+-+.. +++. ....|.+...
T Consensus 232 Al~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da-v~l~----~~~~l~lvg~ 286 (410)
T PF04841_consen 232 ALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA-VVLS----WEDELLLVGP 286 (410)
T ss_pred EEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc-EEEE----eCCEEEEECC
Confidence 99999999999987666666666543 45677888986643 3332 2345666553
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.027 Score=44.40 Aligned_cols=100 Identities=14% Similarity=0.199 Sum_probs=68.5
Q ss_pred eEEEEEcC---CC-CeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEE
Q 014934 211 VCSVGWAN---RN-THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVS 285 (415)
Q Consensus 211 V~~v~~sp---~g-~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~ 285 (415)
|+++++.. +| +.|++|+.|..|++|+-. ..+..+.. ...|.+++-. +..|+.+..+|+|-+|+-.... -
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl---W 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQRL---W 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCccee---e
Confidence 56666654 43 589999999999999854 55666664 4557777665 6899999999999999864332 2
Q ss_pred EeccccCCeEEEEEeC-C--C-CEEEEEeCCCcEEE
Q 014934 286 KLSGHKSEVCGLKWSY-D--N-RELASGGNDNRLFV 317 (415)
Q Consensus 286 ~~~~h~~~V~~l~~sp-d--g-~~lasg~~dg~I~i 317 (415)
..+. +..+.++.+.. + | ..|++|-.+|.|-+
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2222 23466666553 2 2 36889988888743
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0018 Score=64.75 Aligned_cols=92 Identities=22% Similarity=0.351 Sum_probs=78.0
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEE-EEEee--CCEEEEEeCCCcEEEEECCCCCccEE
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVG-ALAWS--SSLLSSGSRDKSILQRDIRAQEDFVS 285 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~-~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~ 285 (415)
..+.-+.|+|.-..+|.++.+|.|.+..+. .+.+-++.-|...++ +++|. |+.|+.|-.||+|++.|+.++.....
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 568889999999999999999999999988 777788887777777 99998 68999999999999999999885444
Q ss_pred EeccccCCeEEEEEeC
Q 014934 286 KLSGHKSEVCGLKWSY 301 (415)
Q Consensus 286 ~~~~h~~~V~~l~~sp 301 (415)
........|.++-|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 4445566788888874
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0023 Score=67.63 Aligned_cols=112 Identities=18% Similarity=0.246 Sum_probs=82.3
Q ss_pred CCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 014934 249 HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 249 h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~ 328 (415)
....+.+.+.-...++.|+..|.+...|++..-.+...-..-.++|.+++|+.+|..++.|-.+|.|.+||+..+++++.
T Consensus 88 ~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 88 IAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred CCcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence 34455566666778999999999999998765333333334467899999999999999999999999999999999999
Q ss_pred eccCCCcEEEEE---EcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 329 YCEHTAAVKAIA---WSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 329 ~~~h~~~V~~l~---~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
+..|.+++.++- |..++. .+.++. ..|. +|.+
T Consensus 168 i~e~~ap~t~vi~v~~t~~nS-~llt~D--~~Gs--f~~l 202 (1206)
T KOG2079|consen 168 ITEHGAPVTGVIFVGRTSQNS-KLLTSD--TGGS--FWKL 202 (1206)
T ss_pred eeecCCccceEEEEEEeCCCc-EEEEcc--CCCc--eEEE
Confidence 988877766553 344444 555543 3343 6654
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0067 Score=64.62 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=92.0
Q ss_pred CCeEEEEEcCCCCeEEEEECC--CcEEEEECCCCeee-----EEec------CCCccEEEEEeeC---CEEEEEeCCCcE
Q 014934 209 DSVCSVGWANRNTHLAVGTSH--GKVQIWDASRCKRV-----RTME------GHRLRVGALAWSS---SLLSSGSRDKSI 272 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~d--g~V~iwd~~~~~~~-----~~l~------~h~~~V~~l~~~~---~~l~sgs~dg~I 272 (415)
-.+..+...+|+...++.... -.|..||+++...- .-+. ....-..++.|++ ...+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345555666777765554333 36889998653211 1111 1234466788984 567888899999
Q ss_pred EEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEecc----CCCcEEEEEEcCCCCcE
Q 014934 273 LQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE----HTAAVKAIAWSPHLHGL 348 (415)
Q Consensus 273 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~----h~~~V~~l~~sp~~~~l 348 (415)
.+.-+......+..+ .....+++++|+|.|++++.|-+.|++.=|-..-. ....+.+ ....|.+|+|-....++
T Consensus 181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEE
Confidence 888776544323322 24557899999999999999999999887765322 1122211 25789999999887766
Q ss_pred EEEEc
Q 014934 349 LASGG 353 (415)
Q Consensus 349 lasgg 353 (415)
++-+.
T Consensus 259 vvy~n 263 (1405)
T KOG3630|consen 259 VVYGN 263 (1405)
T ss_pred EEecc
Confidence 65544
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.031 Score=57.89 Aligned_cols=174 Identities=14% Similarity=0.103 Sum_probs=94.4
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC-----cEEEEECCCCe--eeEEecCCCccEEEEEeeC
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG-----KVQIWDASRCK--RVRTMEGHRLRVGALAWSS 260 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg-----~V~iwd~~~~~--~~~~l~~h~~~V~~l~~~~ 260 (415)
.+..||..++.....-.......-.++ ..-+|+..++|+.+| .|..||..+.+ .+..+.........+...+
T Consensus 321 ~v~~Yd~~~n~W~~~~~m~~~R~~~~~-~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g 399 (557)
T PHA02713 321 KVYKINIENKIHVELPPMIKNRCRFSL-AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQ 399 (557)
T ss_pred eEEEEECCCCeEeeCCCCcchhhceeE-EEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECC
Confidence 478888888766544332211111122 223678888888764 48899987653 3233332222333445567
Q ss_pred CEEEEEeCCC-----------------------cEEEEECCCCCccEEEeccc-cCCe-EEEEEeCCCCEEEEEeCC---
Q 014934 261 SLLSSGSRDK-----------------------SILQRDIRAQEDFVSKLSGH-KSEV-CGLKWSYDNRELASGGND--- 312 (415)
Q Consensus 261 ~~l~sgs~dg-----------------------~I~iwd~~~~~~~~~~~~~h-~~~V-~~l~~spdg~~lasg~~d--- 312 (415)
.+.+.|+.++ .+..||..+..- .....- .... .+++ .-++++.+.||.+
T Consensus 400 ~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W--~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~ 476 (557)
T PHA02713 400 YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW--ETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEK 476 (557)
T ss_pred EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE--eecCCCCcccccCcEE-EECCEEEEEeCCCCCC
Confidence 7778887653 477788876541 111110 0111 1222 2257777888764
Q ss_pred ---CcEEEEECCC-Cc--eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCC--eEEEEECCCCcE
Q 014934 313 ---NRLFVWNQHS-TQ--PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR--CIRFWNTTTNTH 370 (415)
Q Consensus 313 ---g~I~iwd~~~-~~--~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~--~I~iwd~~t~~~ 370 (415)
..+..||..+ .+ .+..+.........+++ +..+++.|| .++ .+..||..+.+-
T Consensus 477 ~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg--~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 477 NVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHC--YESYMLQDTFNVYTYEW 537 (557)
T ss_pred ccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEee--ecceeehhhcCcccccc
Confidence 2467899886 33 23333322323333333 335888887 676 677777776653
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0021 Score=38.77 Aligned_cols=31 Identities=29% Similarity=0.613 Sum_probs=28.6
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEE
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWD 236 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd 236 (415)
.|...|.++.|.+++..+++|+.||.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5678999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.28 Score=45.05 Aligned_cols=190 Identities=12% Similarity=0.098 Sum_probs=118.5
Q ss_pred eEEeEecCCCCCeEEEEEcCCCCeEEEEECCC--cEEEEECCCCeeeEEecCCC-ccEEEEEeeC-CEEEEEeCCCcEEE
Q 014934 199 VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG--KVQIWDASRCKRVRTMEGHR-LRVGALAWSS-SLLSSGSRDKSILQ 274 (415)
Q Consensus 199 ~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg--~V~iwd~~~~~~~~~l~~h~-~~V~~l~~~~-~~l~sgs~dg~I~i 274 (415)
++..+..........+.|..+|.++-+.+.-| .|+.+|+.+++......-.. ----.++..+ .+..-.=.++...+
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEE
Confidence 34445434455677888877888777776655 69999999998765544221 1122333334 44444557889999
Q ss_pred EECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-----CCcEEEEEEcCCCCcEE
Q 014934 275 RDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH-----TAAVKAIAWSPHLHGLL 349 (415)
Q Consensus 275 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~ll 349 (415)
||..+-+ .+..+. ..++=++|+ .|++.|+.......|+.+|..+.+...++.-. -..++.+.|- +| .++
T Consensus 115 yd~~tl~-~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G-~Iy 188 (264)
T PF05096_consen 115 YDPNTLK-KIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG-KIY 188 (264)
T ss_dssp EETTTTE-EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT-EEE
T ss_pred Eccccce-EEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC-EEE
Confidence 9998765 344443 345677777 46777877777889999999888776665422 2345667776 33 366
Q ss_pred EEEcCCCCCeEEEEECCCCcEEEEeeC----------------CCCEEEEEECCCCCeEEEEEe
Q 014934 350 ASGGGTADRCIRFWNTTTNTHLSCMDT----------------GSQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 350 asggg~~d~~I~iwd~~t~~~~~~~~~----------------~~~V~~l~~s~~~~~l~s~~g 397 (415)
|--= ....|...|..+|+.+..++. ..-.++++|.|..+.|..| |
T Consensus 189 ANVW--~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT-G 249 (264)
T PF05096_consen 189 ANVW--QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT-G 249 (264)
T ss_dssp EEET--TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE-E
T ss_pred EEeC--CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE-e
Confidence 6543 567788889999999887741 1236789999888777775 5
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.017 Score=57.06 Aligned_cols=131 Identities=14% Similarity=0.113 Sum_probs=94.4
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCC-------eEEEEECCCcEEEEECCCCe--eeEEecCCC----cc
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT-------HLAVGTSHGKVQIWDASRCK--RVRTMEGHR----LR 252 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~-------~la~g~~dg~V~iwd~~~~~--~~~~l~~h~----~~ 252 (415)
...+|-.|++.|+++....++. .|.-+.+.|+++ .=++|-.+..|.-||.+-.. .+...++|. ..
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~--di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~n 432 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFED--DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNN 432 (644)
T ss_pred cCcceeeecccceeeeEeeccC--CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccc
Confidence 3679999999999999887543 378888888653 23567888899999986432 233333332 23
Q ss_pred EEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 253 VGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 253 V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
..|.+-. ..++++||.+|.|++||- .+......+.+-..+|..+..+.+|++|+..+ +..+.+-++
T Consensus 433 Fsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 433 FSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred cceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 4454444 579999999999999997 44434566778889999999999999876554 556777675
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.33 Score=44.94 Aligned_cols=186 Identities=13% Similarity=0.154 Sum_probs=123.7
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecC-CCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG-HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED 282 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~ 282 (415)
+....|.++.|+|+.+.|++....+.-.|+=..+|+.++++.- .-...-.|.|. +.+.++--+++.+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 4456699999999999888888888777777778898888752 12234456665 34555556788888887765532
Q ss_pred cEE------Eec--cc-cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-e--eEEeccCC-------CcEEEEEEcC
Q 014934 283 FVS------KLS--GH-KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-P--VLKYCEHT-------AAVKAIAWSP 343 (415)
Q Consensus 283 ~~~------~~~--~h-~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~-~--~~~~~~h~-------~~V~~l~~sp 343 (415)
.+. .+. .+ .....+++|+|....|..+=+-+-+.||...... . +.....+. ..|.++.|.+
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 111 111 12 4567899999999998888888877777765332 1 11111222 3567889998
Q ss_pred CCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-----C-----CCCEEEEEECCCCCeEEE
Q 014934 344 HLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-----T-----GSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 344 ~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-----~-----~~~V~~l~~s~~~~~l~s 394 (415)
....||+-+. +++.+.-.|... ..+..+. + --+.-+++...+|...++
T Consensus 243 ~~~~LLVLS~--ESr~l~Evd~~G-~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 243 ITNSLLVLSD--ESRRLLEVDLSG-EVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred CCCcEEEEec--CCceEEEEecCC-CeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 8777888876 788888888654 3344332 1 134567888888876666
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.84 Score=48.61 Aligned_cols=247 Identities=11% Similarity=0.022 Sum_probs=126.7
Q ss_pred CceeccCCCCC---CCcceeEeecCC-CcEEEEEcC--C----eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEE
Q 014934 155 PYKILDAPALQ---DDFYLNLVDWSS-HNVLAVGLG--N----CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA 224 (415)
Q Consensus 155 p~~~ld~~~l~---~~~~i~~l~ws~-~~~la~~~d--~----~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la 224 (415)
+..+||...+. +.+.+..+.|+| +++|+.+.| | .|++.|+.+++..... +. ..-..++|.+|++.|+
T Consensus 111 ~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~--~~~~~~~w~~D~~~~~ 187 (686)
T PRK10115 111 WETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LD--NVEPSFVWANDSWTFY 187 (686)
T ss_pred CEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-cc--CcceEEEEeeCCCEEE
Confidence 56677766552 235678889999 788988854 2 4999999888642221 11 1225699999998777
Q ss_pred EEECC------CcEEEEECCCC--eeeEEecCCCccEEEEEe---eCCEEEEEe---CCCcEEEEECCCCCccEEEeccc
Q 014934 225 VGTSH------GKVQIWDASRC--KRVRTMEGHRLRVGALAW---SSSLLSSGS---RDKSILQRDIRAQEDFVSKLSGH 290 (415)
Q Consensus 225 ~g~~d------g~V~iwd~~~~--~~~~~l~~h~~~V~~l~~---~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~h 290 (415)
....+ -.|..+++.++ +....+........-..+ ++.+++..+ .++.+.+++..........+..+
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR 267 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC
Confidence 76543 25778888877 333444433333321222 244444433 34578888853321111112222
Q ss_pred cC-CeEEEEEeCCCCEEEEEeC----CCcEEEEECCCCceeEEeccC-C-CcEEEEEEcCCCCcEEEEEcCCCCCeEE--
Q 014934 291 KS-EVCGLKWSYDNRELASGGN----DNRLFVWNQHSTQPVLKYCEH-T-AAVKAIAWSPHLHGLLASGGGTADRCIR-- 361 (415)
Q Consensus 291 ~~-~V~~l~~spdg~~lasg~~----dg~I~iwd~~~~~~~~~~~~h-~-~~V~~l~~sp~~~~llasggg~~d~~I~-- 361 (415)
.. ....+. +.. ..|..-++ ...|...++.+......+-.+ . ..|..+.+. +..|+++.. .++.-+
T Consensus 268 ~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~--~~g~~~l~ 341 (686)
T PRK10115 268 RKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER--QRGLTSLR 341 (686)
T ss_pred CCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE--eCCEEEEE
Confidence 22 222222 323 33333322 224555565522222233344 3 367888887 445777665 555544
Q ss_pred EEECCCCcEEEEeeC--CCCEEEEEEC--CCCCeEEEEEec--CCCcEEEEECCCC
Q 014934 362 FWNTTTNTHLSCMDT--GSQVCNLVWS--KNVNELVSTHGY--SQNQIIVWRYPTM 411 (415)
Q Consensus 362 iwd~~t~~~~~~~~~--~~~V~~l~~s--~~~~~l~s~~g~--~dg~I~vw~~~s~ 411 (415)
+++..++ .+..+.. ...+..+.++ +++..++.+..+ .-+.+..+|..+.
T Consensus 342 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 342 QINRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred EEcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 4554433 3344331 2233334444 444434332122 2357777777654
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.39 Score=44.70 Aligned_cols=193 Identities=16% Similarity=0.138 Sum_probs=111.4
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeE-------------ecCCCCCeEEEE---EcCCCCeEEEEECCCcE
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLC-------------DLGIDDSVCSVG---WANRNTHLAVGTSHGKV 232 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~-------------~~~~~~~V~~v~---~sp~g~~la~g~~dg~V 232 (415)
|.-+..-+ -++|.+-.|+.++++++..-...... .+.....+..++ -...+.+|+++. ...|
T Consensus 38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEE
Confidence 44444444 45666667899999998764433311 123334555555 122334555554 4488
Q ss_pred EEEECCCC-----eeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEec--c----------ccCCeE
Q 014934 233 QIWDASRC-----KRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS--G----------HKSEVC 295 (415)
Q Consensus 233 ~iwd~~~~-----~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~----------h~~~V~ 295 (415)
.+|..... +..+.+. -...+.+++|.++.++.|..++ ..+.|+.++.. ...+. . ...++.
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~~i~v~~~~~-f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGNKICVGTSKG-FYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLG 193 (275)
T ss_pred EEEEEECCcccccceeEEEE-cCCCcEEEEEeCCEEEEEeCCc-eEEEecCCCCc-eEEeCccCCcchhhhcccCCCceE
Confidence 88887542 3445554 4578999999999999998665 78889886552 22221 1 112344
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeE--EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE
Q 014934 296 GLKWSYDNRELASGGNDNRLFVWNQHSTQPVL--KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC 373 (415)
Q Consensus 296 ~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~ 373 (415)
.+... ++.+|++- |+.-...|. .|++.. .+.- ...+.++++. ..++++.. ++.|.||++.+++.++.
T Consensus 194 ~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~----~~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 194 IFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFS----SNSIEVRSLETGELVQT 262 (275)
T ss_pred EEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEc-CCchhEEEEE--CCEEEEEC----CCEEEEEECcCCcEEEE
Confidence 44443 45555543 333333344 443332 2322 2345566664 34576654 57799999999999998
Q ss_pred eeCC
Q 014934 374 MDTG 377 (415)
Q Consensus 374 ~~~~ 377 (415)
+...
T Consensus 263 i~~~ 266 (275)
T PF00780_consen 263 IPLP 266 (275)
T ss_pred EECC
Confidence 8743
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.3 Score=50.81 Aligned_cols=180 Identities=11% Similarity=0.132 Sum_probs=97.9
Q ss_pred CCeEEEEEcCCCCeEEEEE------CCCcEEEEECCCCeeeEEe-cCCCccEEEEEeeC--CEEEEEeC-----------
Q 014934 209 DSVCSVGWANRNTHLAVGT------SHGKVQIWDASRCKRVRTM-EGHRLRVGALAWSS--SLLSSGSR----------- 268 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~------~dg~V~iwd~~~~~~~~~l-~~h~~~V~~l~~~~--~~l~sgs~----------- 268 (415)
..+.+.+++|+|+.+|... .|+.-.||-...+.....+ .+. ..+.-.|++ ..|++...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 4688999999999887765 2444444433222212222 322 366677773 44544432
Q ss_pred -CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE---EECCCCce-e---EEec-cCCCcEEEE
Q 014934 269 -DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV---WNQHSTQP-V---LKYC-EHTAAVKAI 339 (415)
Q Consensus 269 -dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~i---wd~~~~~~-~---~~~~-~h~~~V~~l 339 (415)
.+.+.+.+++.+.. .. .....|..+.|||||..+|... +++|+| -....+.. + ..+. .-...+..+
T Consensus 428 ~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 428 ATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 23444445544431 11 3356799999999999988765 477877 44444431 1 1122 223346889
Q ss_pred EEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC---CCCEEEEEECCCCCeEEEEEecCCCc
Q 014934 340 AWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 340 ~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~---~~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
.|..++. |++...+ .+..+...++.... ...+.. ..++..++-++. .++. ...++.
T Consensus 503 ~W~~~~~-L~V~~~~-~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv--~~~~g~ 561 (591)
T PRK13616 503 DWRTGDS-LVVGRSD-PEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYV--TDARAV 561 (591)
T ss_pred eEecCCE-EEEEecC-CCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEE--EcCCce
Confidence 9999987 5543321 34445444554222 212122 355667776653 3444 234553
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.28 Score=52.15 Aligned_cols=209 Identities=12% Similarity=0.091 Sum_probs=131.3
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEE---EEEcCC-CCeEEEEEC----------CCcEEEEECCCCeeeEEecCC--Cc
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCS---VGWANR-NTHLAVGTS----------HGKVQIWDASRCKRVRTMEGH--RL 251 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~---v~~sp~-g~~la~g~~----------dg~V~iwd~~~~~~~~~l~~h--~~ 251 (415)
.++++|.+|-+.....++.....+.+ +.|..| +.++++|+. .|.|.++.....+.++.+..+ .+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 48888888888777777655555444 448877 789999864 478888888764444444332 34
Q ss_pred cEEEEE-eeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC--CCceeEE
Q 014934 252 RVGALA-WSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH--STQPVLK 328 (415)
Q Consensus 252 ~V~~l~-~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~--~~~~~~~ 328 (415)
.|.++. |++.+++. -...|++|++...+ .++.-..|..++..+...-.|..+|+|..=+.+.+--.+ .+.....
T Consensus 831 av~aL~~fngkllA~--In~~vrLye~t~~~-eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 831 AVYALVEFNGKLLAG--INQSVRLYEWTTER-ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred ceeehhhhCCeEEEe--cCcEEEEEEccccc-eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 555554 34555443 45679999998775 356666788889999999999999999887776654433 3333322
Q ss_pred ec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC-------------------CcEEEEeeCCCCEEE--EEEC
Q 014934 329 YC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-------------------NTHLSCMDTGSQVCN--LVWS 386 (415)
Q Consensus 329 ~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t-------------------~~~~~~~~~~~~V~~--l~~s 386 (415)
-+ .+....+++.+-.+..++.+. .++.+.+--..+ |+.+..+.+++-|.. -..+
T Consensus 908 ArD~~p~Wmtaveil~~d~ylgae----~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~ 983 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEILDDDTYLGAE----NSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMI 983 (1096)
T ss_pred ehhhCccceeeEEEecCceEEeec----ccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeecccccc
Confidence 22 366677888777665533332 456666554332 233444445555555 2334
Q ss_pred CCCCeEEEEEecCCCcEEE
Q 014934 387 KNVNELVSTHGYSQNQIIV 405 (415)
Q Consensus 387 ~~~~~l~s~~g~~dg~I~v 405 (415)
|-+..++. |..+|.|-+
T Consensus 984 ~~~~~vlf--gTv~GsIG~ 1000 (1096)
T KOG1897|consen 984 PLEPKVLF--GTVNGSIGI 1000 (1096)
T ss_pred CCCCcEEE--EEccceEEE
Confidence 44555666 566777653
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0017 Score=57.38 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=75.4
Q ss_pred EECCCcEEEEECCCCeee-EEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccE-EEeccccCCeEEEEEeCCC
Q 014934 226 GTSHGKVQIWDASRCKRV-RTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFV-SKLSGHKSEVCGLKWSYDN 303 (415)
Q Consensus 226 g~~dg~V~iwd~~~~~~~-~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~h~~~V~~l~~spdg 303 (415)
-+.+|.|+-+++...+.- +.-..|... ..+.=-...+++|+.+|.|++|......... ....+-....+.+.--.++
T Consensus 36 ~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~ 114 (238)
T KOG2444|consen 36 TSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDS 114 (238)
T ss_pred ccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccccccc
Confidence 466777777666543211 111111111 1111115789999999999999887332111 1112223334445444567
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCC-CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 304 RELASGGNDNRLFVWNQHSTQPVLKYCEHT-AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
.+..+++.||.|+.|++.-.+.+-....|+ ..+..+..+..++ +++..--+.|..+++|++.
T Consensus 115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 115 SLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcchh
Confidence 788899999999999998887776665666 3333333333332 2332211145555555554
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.071 Score=55.27 Aligned_cols=191 Identities=19% Similarity=0.197 Sum_probs=109.1
Q ss_pred EeecCCCcEEEEE-cC------CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCc-----EEEEECCC
Q 014934 172 LVDWSSHNVLAVG-LG------NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGK-----VQIWDASR 239 (415)
Q Consensus 172 ~l~ws~~~~la~~-~d------~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~-----V~iwd~~~ 239 (415)
+++.-.+.+.++| .+ .++..||..+++............-.+++ .-+|...|+|+.||. |..||..+
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCC
Confidence 4444445555555 34 35899999998876644432211111111 127889999999874 88888876
Q ss_pred Ce--eeEEecCCCccEEEEEeeCCEEEEEeCCC------cEEEEECCCCCccEEEecccc--CCeEEEEEeCCCCEEEEE
Q 014934 240 CK--RVRTMEGHRLRVGALAWSSSLLSSGSRDK------SILQRDIRAQEDFVSKLSGHK--SEVCGLKWSYDNRELASG 309 (415)
Q Consensus 240 ~~--~~~~l~~h~~~V~~l~~~~~~l~sgs~dg------~I~iwd~~~~~~~~~~~~~h~--~~V~~l~~spdg~~lasg 309 (415)
.+ .+..+......+....+.+.+.++||.++ ++..||..+..- .....-. ..-.+++. -++.+.+.|
T Consensus 406 ~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W--~~~~~M~~~R~~~g~a~-~~~~iYvvG 482 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW--TLIAPMNTRRSGFGVAV-LNGKIYVVG 482 (571)
T ss_pred CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce--eecCCcccccccceEEE-ECCEEEEEC
Confidence 53 34434434455666677788889998665 467788877651 1111100 01111222 267888889
Q ss_pred eCCCc-----EEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCC-----eEEEEECCCCc
Q 014934 310 GNDNR-----LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR-----CIRFWNTTTNT 369 (415)
Q Consensus 310 ~~dg~-----I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~-----~I~iwd~~t~~ 369 (415)
|.|+. |..||..+.+.... ..-......+.....+..+++.|| .|+ +|..||..+.+
T Consensus 483 G~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~g~~~~~~~ly~vGG--~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 483 GFDGTSALSSVERYDPETNQWTMV-APMTSPRSAVGVVVLGGKLYAVGG--FDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CccCCCccceEEEEcCCCCceeEc-ccCccccccccEEEECCEEEEEec--ccCccccceeEEcCCCCCc
Confidence 88763 77788877654322 222222233333333455888886 554 46666666554
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.61 Score=47.99 Aligned_cols=191 Identities=16% Similarity=0.123 Sum_probs=111.1
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeEEecCCC-ccE----------EEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEec
Q 014934 220 NTHLAVGTSHGKVQIWDASRCKRVRTMEGHR-LRV----------GALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS 288 (415)
Q Consensus 220 g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~-~~V----------~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 288 (415)
+..|.+++.++.|.-+|..+++.+-.+.... ..+ ..++..+..++.++.|+.+.-.|.++++..-..-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 4567777778888888998888775554211 111 11344467788889999999999998874322211
Q ss_pred -cccCCeEEEEEeC---CCCEEEEEe------CCCcEEEEECCCCceeEEeccCCC------------------------
Q 014934 289 -GHKSEVCGLKWSY---DNRELASGG------NDNRLFVWNQHSTQPVLKYCEHTA------------------------ 334 (415)
Q Consensus 289 -~h~~~V~~l~~sp---dg~~lasg~------~dg~I~iwd~~~~~~~~~~~~h~~------------------------ 334 (415)
.+... ..+.-+| ++ .++++. .+|.|.-+|.++++.+.++..-..
T Consensus 149 ~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 149 GDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred cccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 11110 0111122 44 444443 268999999999998877642110
Q ss_pred -------cEE-EEEEcCCCCcEEEEEcCC------C----C----CeEEEEECCCCcEEEEeeC-C---------CCEEE
Q 014934 335 -------AVK-AIAWSPHLHGLLASGGGT------A----D----RCIRFWNTTTNTHLSCMDT-G---------SQVCN 382 (415)
Q Consensus 335 -------~V~-~l~~sp~~~~llasggg~------~----d----~~I~iwd~~t~~~~~~~~~-~---------~~V~~ 382 (415)
.+. .+++.|... ++..+.|. . | .+|.-.|++||+....++. . .+..=
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred ccccCCCCccCceeEcCCCC-eEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 111 235555544 33333221 0 1 2677789999998776652 1 12222
Q ss_pred EEECCCCC--eEEEEEecCCCcEEEEECCCCccc
Q 014934 383 LVWSKNVN--ELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 383 l~~s~~~~--~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+....+|+ .++. ++..+|.+.+.|-.+++.+
T Consensus 306 ~d~~~~G~~~~~v~-~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 306 FDLKKDGKPRKLLA-HADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEeccCCcEEEEEE-EeCCCceEEEEECCCCcee
Confidence 33335665 2332 2789999999999888653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.81 Score=44.95 Aligned_cols=214 Identities=10% Similarity=0.080 Sum_probs=101.0
Q ss_pred EEEEEc-CCeEEEEECCCC----CeEEeEec---CCC---CCeEEEEEcCCCCeEEEEEC------CCcEEEEECCCCee
Q 014934 180 VLAVGL-GNCVYLWNACSS----KVTKLCDL---GID---DSVCSVGWANRNTHLAVGTS------HGKVQIWDASRCKR 242 (415)
Q Consensus 180 ~la~~~-d~~V~iwd~~~~----~~~~~~~~---~~~---~~V~~v~~sp~g~~la~g~~------dg~V~iwd~~~~~~ 242 (415)
+++-|. .+.|||.|+.+. ++.++++- ... .....+---|+|..++++-. -|.+.++|-++.+.
T Consensus 90 Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v 169 (461)
T PF05694_consen 90 LILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEV 169 (461)
T ss_dssp EEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--E
T ss_pred EEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccc
Confidence 444454 578999998843 44555431 000 12233444578988887532 35688899888777
Q ss_pred eEEecCC---CccEEEEEeeC--CEEEEEe--------------------CCCcEEEEECCCCCccEEEeccc-c-CCeE
Q 014934 243 VRTMEGH---RLRVGALAWSS--SLLSSGS--------------------RDKSILQRDIRAQEDFVSKLSGH-K-SEVC 295 (415)
Q Consensus 243 ~~~l~~h---~~~V~~l~~~~--~~l~sgs--------------------~dg~I~iwd~~~~~~~~~~~~~h-~-~~V~ 295 (415)
+...+.. ...-..+-|.+ +.+++.. .-.++.+||+...+ .++.+.-- . ....
T Consensus 170 ~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~-~~Q~idLg~~g~~pL 248 (461)
T PF05694_consen 170 KGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK-LLQTIDLGEEGQMPL 248 (461)
T ss_dssp EEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-EEEEEES-TTEEEEE
T ss_pred cceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-EeeEEecCCCCCceE
Confidence 7666532 22334455553 4555553 23579999999887 45555422 2 2344
Q ss_pred EEEEeC--CCCE-EEEEeCCCcEEEEEC-CCCc----eeEEeccC-----------------CCcEEEEEEcCCCCcEEE
Q 014934 296 GLKWSY--DNRE-LASGGNDNRLFVWNQ-HSTQ----PVLKYCEH-----------------TAAVKAIAWSPHLHGLLA 350 (415)
Q Consensus 296 ~l~~sp--dg~~-lasg~~dg~I~iwd~-~~~~----~~~~~~~h-----------------~~~V~~l~~sp~~~~lla 350 (415)
.|.|.. +..+ |+.+.-...|..|-- ..++ .+..+... ..-|+.|..|.|.++|++
T Consensus 249 EvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYv 328 (461)
T PF05694_consen 249 EVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYV 328 (461)
T ss_dssp EEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEE
T ss_pred EEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEE
Confidence 566654 4444 333334455555543 3332 22222110 244789999999999999
Q ss_pred EEcCCCCCeEEEEECCCC---cEEEEeeCCCC-----------------EEEEEECCCCCeEEEEE
Q 014934 351 SGGGTADRCIRFWNTTTN---THLSCMDTGSQ-----------------VCNLVWSKNVNELVSTH 396 (415)
Q Consensus 351 sggg~~d~~I~iwd~~t~---~~~~~~~~~~~-----------------V~~l~~s~~~~~l~s~~ 396 (415)
++= .+|.|+.||+..- +++..+..++. ..-+..|.||+.|..|.
T Consensus 329 s~W--~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 329 SNW--LHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EET--TTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred Ecc--cCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 886 7999999999864 33444332222 24578899999998864
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.7 Score=43.73 Aligned_cols=226 Identities=12% Similarity=0.143 Sum_probs=111.5
Q ss_pred CcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecC--CCCCeEEEEEcCCCCeEEEEECCCcEEEEECC-CCeee
Q 014934 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLG--IDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS-RCKRV 243 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~--~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~-~~~~~ 243 (415)
++.++.|.+..+..+++|..+. .+...+.|+.-..+.+. -.+....+....++..++ ++..|.| |-.. .++.-
T Consensus 61 ~~~l~~I~f~~~~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW 136 (302)
T PF14870_consen 61 DYHLNSISFDGNEGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTW 136 (302)
T ss_dssp --EEEEEEEETTEEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSE
T ss_pred eeeEEEEEecCCceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCe
Confidence 4567888888777777776554 34444445433333221 123444454444444333 3445543 3322 23222
Q ss_pred E-EecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 244 R-TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 244 ~-~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
. ....-.+.+..+.-. +.+++++..-....-||--... -...-..-...|..|.|.|++.+.+.+ ..|.|+.=+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 2 233445667776665 4566666555555577765432 122223346789999999998876655 7888888772
Q ss_pred -CCCceeEE----eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee----CCCCEEEEEECCCCCe
Q 014934 321 -HSTQPVLK----YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD----TGSQVCNLVWSKNVNE 391 (415)
Q Consensus 321 -~~~~~~~~----~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~----~~~~V~~l~~s~~~~~ 391 (415)
........ ...-.-.+..++|.+.+. +.++|+ .+. .+.....|+.-+... ..+.++.+.|..+.+-
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg---~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~g 289 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG---SGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKG 289 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES---TT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEE
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC---Ccc-EEEeCCCCccceECccccCCCCceEEEEEcCCCce
Confidence 22221111 111223478999999865 777775 453 345666777666554 2456888999877777
Q ss_pred EEEEEecCCCcEEEE
Q 014934 392 LVSTHGYSQNQIIVW 406 (415)
Q Consensus 392 l~s~~g~~dg~I~vw 406 (415)
++. | .+|.|.-|
T Consensus 290 f~l--G-~~G~ll~~ 301 (302)
T PF14870_consen 290 FVL--G-QDGVLLRY 301 (302)
T ss_dssp EEE----STTEEEEE
T ss_pred EEE--C-CCcEEEEe
Confidence 777 5 68887665
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0063 Score=64.55 Aligned_cols=93 Identities=22% Similarity=0.352 Sum_probs=69.4
Q ss_pred cEEEEEc-CCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEE
Q 014934 179 NVLAVGL-GNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGAL 256 (415)
Q Consensus 179 ~~la~~~-d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l 256 (415)
..+++|. .|.|-..|..+. +.....- ...++|++++|+.+|..++.|-.+|.|.+||+.+++.++.+..|..+++.+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 4466664 467877776543 2211111 236799999999999999999999999999999999999988887777766
Q ss_pred Eee-----CCEEEEEeCCCcE
Q 014934 257 AWS-----SSLLSSGSRDKSI 272 (415)
Q Consensus 257 ~~~-----~~~l~sgs~dg~I 272 (415)
-+. +..++++..-|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCce
Confidence 554 3568888777763
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.011 Score=39.01 Aligned_cols=33 Identities=21% Similarity=0.481 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
...|.+++|+|..++||+|+.+|.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 467999999999999999999999999998 444
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.3 Score=47.44 Aligned_cols=194 Identities=11% Similarity=0.039 Sum_probs=112.5
Q ss_pred cEEEEE-cCCeEEEEECCCCCeEEeEecCCCC-------CeEEEEEc----------------CCCCeEEEEECCCcEEE
Q 014934 179 NVLAVG-LGNCVYLWNACSSKVTKLCDLGIDD-------SVCSVGWA----------------NRNTHLAVGTSHGKVQI 234 (415)
Q Consensus 179 ~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~-------~V~~v~~s----------------p~g~~la~g~~dg~V~i 234 (415)
+.|.++ .++.|+-.|..+|+..-.++..... ....+.+. .++.++++++.||.|.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 444444 5678888899888876666532111 11223332 13457888999999999
Q ss_pred EECCCCeeeEEecCCCccE----------------EE-EEeeCCEEEEEeC----------CCcEEEEECCCCCccEEEe
Q 014934 235 WDASRCKRVRTMEGHRLRV----------------GA-LAWSSSLLSSGSR----------DKSILQRDIRAQEDFVSKL 287 (415)
Q Consensus 235 wd~~~~~~~~~l~~h~~~V----------------~~-l~~~~~~l~sgs~----------dg~I~iwd~~~~~~~~~~~ 287 (415)
.|.++++.+-.+.. .+.| ++ -...++.+++|+. +|.|+-+|.++++..-...
T Consensus 275 LDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 275 LDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999998866532 1111 00 1112466777753 6889999999987422221
Q ss_pred ccc--------cC--------Ce-EEEEEeCCCCEEEEEe------------------CCCcEEEEECCCCceeEEeccC
Q 014934 288 SGH--------KS--------EV-CGLKWSYDNRELASGG------------------NDNRLFVWNQHSTQPVLKYCEH 332 (415)
Q Consensus 288 ~~h--------~~--------~V-~~l~~spdg~~lasg~------------------~dg~I~iwd~~~~~~~~~~~~h 332 (415)
.+. .+ .+ ..++++++..++..+. ..+.|.-.|+++++....++..
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 110 00 11 2334455444444321 1245667788889888777642
Q ss_pred CCcEEE---------EEEcC-CCC--cEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 333 TAAVKA---------IAWSP-HLH--GLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 333 ~~~V~~---------l~~sp-~~~--~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
...+.. +.+.. +|+ .+++.+. .+|.+.+.|-++|+.+..++
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT--KQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEEC--CCCEEEEEECCCCCEEeece
Confidence 221111 12222 342 2555554 89999999999999887653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.38 Score=45.71 Aligned_cols=175 Identities=13% Similarity=0.032 Sum_probs=111.0
Q ss_pred CCCcEEEEEcCCeEEEEECCCCCe-EEeEecCC---CCCeEEEEEcCCCCeEEEEEC-----------CCcEEEEECCCC
Q 014934 176 SSHNVLAVGLGNCVYLWNACSSKV-TKLCDLGI---DDSVCSVGWANRNTHLAVGTS-----------HGKVQIWDASRC 240 (415)
Q Consensus 176 s~~~~la~~~d~~V~iwd~~~~~~-~~~~~~~~---~~~V~~v~~sp~g~~la~g~~-----------dg~V~iwd~~~~ 240 (415)
..+..|+++ +..+++++.+++.. ..+..... ....+.+...|+|.+.+.... -|.|..+|. .+
T Consensus 75 d~~g~Lv~~-~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g 152 (307)
T COG3386 75 DAGGRLIAC-EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG 152 (307)
T ss_pred cCCCeEEEE-ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC
Confidence 334444444 55677777766666 34433321 244567888899886654333 133444443 46
Q ss_pred eeeEEecCCCccEEEEEeeC--CEEEEEe-CCCcEEEEECCC--C---C-ccEEEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 241 KRVRTMEGHRLRVGALAWSS--SLLSSGS-RDKSILQRDIRA--Q---E-DFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~~--~~l~sgs-~dg~I~iwd~~~--~---~-~~~~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
..++.+..+-..-+.|+|++ +.|+... ..+.|..|++.. . . .....+....+..-+++...+|.+.+++..
T Consensus 153 ~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~ 232 (307)
T COG3386 153 GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW 232 (307)
T ss_pred CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc
Confidence 66666666666778899994 4555554 457888887762 1 1 112222234566778888889998865555
Q ss_pred CC-cEEEEECCCCceeEEeccCCCcEEEEEEc-CCCCcEEEEEc
Q 014934 312 DN-RLFVWNQHSTQPVLKYCEHTAAVKAIAWS-PHLHGLLASGG 353 (415)
Q Consensus 312 dg-~I~iwd~~~~~~~~~~~~h~~~V~~l~~s-p~~~~llasgg 353 (415)
+| .|.+|+.. ++.+..+.-+...+.+++|- |+.+.|++++.
T Consensus 233 ~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 233 GGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 54 89999998 88988888776778888885 45566777764
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.13 Score=53.43 Aligned_cols=166 Identities=15% Similarity=0.116 Sum_probs=89.6
Q ss_pred CCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEe------CCC--cEEEEECCCCCccEEEeccccCCeEEEE
Q 014934 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGS------RDK--SILQRDIRAQEDFVSKLSGHKSEVCGLK 298 (415)
Q Consensus 229 dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs------~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 298 (415)
+|.+.-.+-.....+.-..+....+...+.+ ++.++... .|. .|.+++.... ......+ .....-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~--~~~lt~g--~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV--AVQVLEG--HSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc--ceeeecC--CCCCCce
Confidence 6666554432222222222222345666666 44444433 233 4566565322 2222333 2478889
Q ss_pred EeCCCCEEEEEeCC------------CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEE---E
Q 014934 299 WSYDNRELASGGND------------NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF---W 363 (415)
Q Consensus 299 ~spdg~~lasg~~d------------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~i---w 363 (415)
|+|||+.|++.... +.+.+.++..+.... ...+.|..+.|+|||..+++.. ++.|.+ -
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vv 476 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII----GGKVYLAVVE 476 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEE
Confidence 99999888776533 233333443333222 2356799999999999887765 356776 4
Q ss_pred ECCCCcE-E---EEee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 364 NTTTNTH-L---SCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 364 d~~t~~~-~---~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
....|+. + ..+. ....+..+.|..++..++.+ .++.-.+|.+
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~---~~~~~~v~~v 524 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGR---SDPEHPVWYV 524 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCCEEEEEe---cCCCCceEEE
Confidence 4445541 1 1122 23346889999999865442 3333444543
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.27 Score=50.70 Aligned_cols=174 Identities=14% Similarity=0.063 Sum_probs=88.6
Q ss_pred eEEEEECCCCCeEEeEecCC-CCCeEEEEEcCCCCeEEEEECC-----CcEEEEECCCCeee--EEecCCCccEEEEEee
Q 014934 188 CVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCKRV--RTMEGHRLRVGALAWS 259 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~-~~~V~~v~~sp~g~~la~g~~d-----g~V~iwd~~~~~~~--~~l~~h~~~V~~l~~~ 259 (415)
.++.||..+.+....-.... ......+. -++...+.|+.+ ..+..||..+.+-. ..+.............
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~ 389 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVN 389 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEEC
Confidence 58889988887755543321 22222222 367788888765 34778888765322 2222111222233345
Q ss_pred CCEEEEEeCC------CcEEEEECCCCCccEEEeccccC--CeEEEEEeCCCCEEEEEeCC--------CcEEEEECCCC
Q 014934 260 SSLLSSGSRD------KSILQRDIRAQEDFVSKLSGHKS--EVCGLKWSYDNRELASGGND--------NRLFVWNQHST 323 (415)
Q Consensus 260 ~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~h~~--~V~~l~~spdg~~lasg~~d--------g~I~iwd~~~~ 323 (415)
+.+.+.|+.+ ..+..||+.+.. ......... .-.++. ..++.+++.||.+ ..+.+||..+.
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPISHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCccccCceEE-EECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 6677777732 358889987654 111111110 011122 2356677777643 23889998776
Q ss_pred ceeEE--eccCCCcEEEEEEcCCCCcEEEEEcCCC---CCeEEEEECCCCc
Q 014934 324 QPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTA---DRCIRFWNTTTNT 369 (415)
Q Consensus 324 ~~~~~--~~~h~~~V~~l~~sp~~~~llasggg~~---d~~I~iwd~~t~~ 369 (415)
+-... +.........+.+ ++ .+++.||... ...|.+||..+.+
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCCE
Confidence 43221 1111111122222 33 4777775211 2467788877664
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.85 Score=42.10 Aligned_cols=228 Identities=11% Similarity=0.065 Sum_probs=129.8
Q ss_pred EeecCC--CcEEEEEc--CCeEEEEECCCCCeEEeEecCCCC-CeEEEEEcCCCCeEEEEEC-----CCcEEEEECCCC-
Q 014934 172 LVDWSS--HNVLAVGL--GNCVYLWNACSSKVTKLCDLGIDD-SVCSVGWANRNTHLAVGTS-----HGKVQIWDASRC- 240 (415)
Q Consensus 172 ~l~ws~--~~~la~~~--d~~V~iwd~~~~~~~~~~~~~~~~-~V~~v~~sp~g~~la~g~~-----dg~V~iwd~~~~- 240 (415)
-+.++| ..-++.+- +...+++|..+.+...+....... ..-.=.|||||.+|...-. -|.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 356777 45666663 456889999887765554321111 1122368999998887543 378999998743
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEE--------------------EECCCCCcc-EEEec--cccCCeE
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQ--------------------RDIRAQEDF-VSKLS--GHKSEVC 295 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~i--------------------wd~~~~~~~-~~~~~--~h~~~V~ 295 (415)
+.+..+..|.-.-..+.|. ++.++.+. |-|.. .|-.+++-. .+++. -+.-.|.
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 4566777777667777776 45555542 22332 332222210 01111 2344578
Q ss_pred EEEEeCCCCEEEEEeCCCc-----EEEEECCCCceeEEecc-------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 296 GLKWSYDNRELASGGNDNR-----LFVWNQHSTQPVLKYCE-------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 296 ~l~~spdg~~lasg~~dg~-----I~iwd~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
.++..+||..++-+-..|. -.|=-...++++.-+.- ....|-+|+.+.+...+.+++- ..+...+|
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP--~GN~~vi~ 307 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP--RGNRAVIW 307 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC--CCCeEEEE
Confidence 8888888877666543331 11112223444433321 2345777888877665666654 67788999
Q ss_pred ECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 364 NTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 364 d~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
|..+|..+.... -..++.+.-...| ++++ +.+|.|.++.-
T Consensus 308 da~tG~vv~~a~-l~daaGva~~~~g--f~vs--sg~G~~~~~s~ 347 (366)
T COG3490 308 DAATGAVVSEAA-LPDAAGVAAAKGG--FAVS--SGQGRIIFYSR 347 (366)
T ss_pred EcCCCcEEeccc-ccccccceeccCc--eEEe--cCCceEEeccc
Confidence 999998876542 2233444444444 3332 23677776643
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.34 Score=48.89 Aligned_cols=175 Identities=13% Similarity=0.257 Sum_probs=105.5
Q ss_pred CCeEEEEEcCCCCeEE-EEE--CCCcEEEEECCCCeeeEEecCCCccEEEEEeeC------CEEEEEeCCCcEEEEECCC
Q 014934 209 DSVCSVGWANRNTHLA-VGT--SHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS------SLLSSGSRDKSILQRDIRA 279 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la-~g~--~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~------~~l~sgs~dg~I~iwd~~~ 279 (415)
-+|..++|. ||+.++ +.- .+|.+++=| .+.+..| ..|..+.|.+ --|++....+.|.+|.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 378889997 665444 322 344444322 2334333 4588999973 2466667788899999863
Q ss_pred CC----ccEEEeccc-cC----CeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCcEEEEEEcCCCCcE
Q 014934 280 QE----DFVSKLSGH-KS----EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ--PVLKYCEHTAAVKAIAWSPHLHGL 348 (415)
Q Consensus 280 ~~----~~~~~~~~h-~~----~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l 348 (415)
.. +.+.....+ .. --.++.|+|....|++-.....-.+++++... ...-+ .-.+.|.|.+|.+||..|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEE
Confidence 21 111111111 11 12467899999998886665544556655332 22233 456789999999999988
Q ss_pred EEEEcCCCCCeEEEEECCCCcEE-----EEeeCCCCEEEEEECCCCCeEEE
Q 014934 349 LASGGGTADRCIRFWNTTTNTHL-----SCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 349 lasggg~~d~~I~iwd~~t~~~~-----~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
+++-| ..=.-++||-...... -.++.++.|+++.-.-+.+..++
T Consensus 171 VVAvG--SsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~dsqVAva 219 (671)
T PF15390_consen 171 VVAVG--SSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDSQVAVA 219 (671)
T ss_pred EEEeC--CeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccceEEEE
Confidence 88775 4556789986543211 13456778888777666554443
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.21 Score=52.92 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=56.1
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEEC-CCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEE
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDA-SRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK 286 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~-~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 286 (415)
...|..|.++++|.+||..+..|. .|..+ +.......+.+....|.|-.+. +... . .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~-----------------v~~~---~-~ 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVP-----------------VDER---F-F 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEE-----------------echh---h-c
Confidence 457889999999999999888764 44444 2222222333333333332221 1100 0 1
Q ss_pred eccccCCeEEEEEeCC---CCEEEEEeCCCcEEEEECCCC
Q 014934 287 LSGHKSEVCGLKWSYD---NRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 287 ~~~h~~~V~~l~~spd---g~~lasg~~dg~I~iwd~~~~ 323 (415)
...+...|..+.|+|. +..|++-..|+.+++||+...
T Consensus 142 ~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 142 TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1123456778888885 578888888899999988653
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.012 Score=52.23 Aligned_cols=140 Identities=19% Similarity=0.126 Sum_probs=80.2
Q ss_pred cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe-eeEEecCCCccEEEEE
Q 014934 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-RVRTMEGHRLRVGALA 257 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~-~~~~l~~h~~~V~~l~ 257 (415)
.+++.+.++.|.-+++...+....-..-+... .....-+..+++|+.+|.|.+|...... ....+..-...|-++.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 45666666766666654332211111111111 1112235679999999999999876321 1112222234454544
Q ss_pred ee---CCEEEEEeCCCcEEEEECCCCCccEEEecccc-CCeEEEEEeCCCCEEEEE--eCCCcEEEEECCC
Q 014934 258 WS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK-SEVCGLKWSYDNRELASG--GNDNRLFVWNQHS 322 (415)
Q Consensus 258 ~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~lasg--~~dg~I~iwd~~~ 322 (415)
.. +.+.++++.||.|+.|++.-.. .+.....|. ..+..+..+..++.++.+ +.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k-~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNK-VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCc-eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 44 3488999999999999997665 344445555 445555555556666666 6666677776643
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.22 Score=50.16 Aligned_cols=144 Identities=17% Similarity=0.284 Sum_probs=83.9
Q ss_pred ccEEEEEee-CCE-EEEEe--CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC----C-CEEEEEeCCCcEEEEECC
Q 014934 251 LRVGALAWS-SSL-LSSGS--RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD----N-RELASGGNDNRLFVWNQH 321 (415)
Q Consensus 251 ~~V~~l~~~-~~~-l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd----g-~~lasg~~dg~I~iwd~~ 321 (415)
.++..++|. |+. +++.- .+|.+++=|- ..+ +.-..|+++.|.|- - .+||+ -....|.||-+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds----~vi----GqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS----KVI----GQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLC 90 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc----cEe----eccceeeeeeecCcccCCCCceEEE-eccceEEEEEec
Confidence 478899997 443 33331 2333333221 122 22345999999984 2 34555 456789999975
Q ss_pred -----CCceeEEeccCC-C----cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC--cEEEEeeCCCCEEEEEECCCC
Q 014934 322 -----STQPVLKYCEHT-A----AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN--THLSCMDTGSQVCNLVWSKNV 389 (415)
Q Consensus 322 -----~~~~~~~~~~h~-~----~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~--~~~~~~~~~~~V~~l~~s~~~ 389 (415)
..+.+..-..+- . --..+.|+|... +|+.-. ....-.++++... .....++..+.|.+.+|.+||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT--~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLT--ARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEe--cCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence 223332221111 1 124678999987 554432 2333345566543 334455678889999999999
Q ss_pred CeEEEEEecCCCcEEEEE
Q 014934 390 NELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 390 ~~l~s~~g~~dg~I~vw~ 407 (415)
+.|+++.|+ .=.-+|||
T Consensus 168 ~RLVVAvGS-sLHSyiWd 184 (671)
T PF15390_consen 168 QRLVVAVGS-SLHSYIWD 184 (671)
T ss_pred CEEEEEeCC-eEEEEEec
Confidence 999997664 22445666
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.23 Score=51.25 Aligned_cols=184 Identities=12% Similarity=0.052 Sum_probs=90.2
Q ss_pred CCCCeEEEEECCC------cEEEEECCCCeeeE--EecCCCccEEEEEeeCCEEEEEeCCC-----cEEEEECCCCCccE
Q 014934 218 NRNTHLAVGTSHG------KVQIWDASRCKRVR--TMEGHRLRVGALAWSSSLLSSGSRDK-----SILQRDIRAQEDFV 284 (415)
Q Consensus 218 p~g~~la~g~~dg------~V~iwd~~~~~~~~--~l~~h~~~V~~l~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~ 284 (415)
.++..+++|+.++ .+..||..+.+-.. .+.........+...+.+++.||.++ .+..||..+.. .
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESK--W 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCc--e
Confidence 3566677776543 57788887654322 12212223344455577778888653 47778887654 1
Q ss_pred EEecc--ccCCeEEEEEeCCCCEEEEEeCC------CcEEEEECCCCceeEE--eccCCCcEEEEEEcCCCCcEEEEEcC
Q 014934 285 SKLSG--HKSEVCGLKWSYDNRELASGGND------NRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGG 354 (415)
Q Consensus 285 ~~~~~--h~~~V~~l~~spdg~~lasg~~d------g~I~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~llasggg 354 (415)
..... +...-.+++ .-++++++.||.+ +.+..||..+.+-... +....... +++. -+ ..+++.||.
T Consensus 371 ~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~-~~iyv~GG~ 446 (534)
T PHA03098 371 REEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HD-GKIYVIGGI 446 (534)
T ss_pred eeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-EC-CEEEEECCc
Confidence 11111 111111122 2367777777732 4588999876543211 11111111 1222 23 347777752
Q ss_pred CCC------CeEEEEECCCCcEEEEee--CC-CCEEEEEECCCCCeEEEEEecCC-----CcEEEEECCCC
Q 014934 355 TAD------RCIRFWNTTTNTHLSCMD--TG-SQVCNLVWSKNVNELVSTHGYSQ-----NQIIVWRYPTM 411 (415)
Q Consensus 355 ~~d------~~I~iwd~~t~~~~~~~~--~~-~~V~~l~~s~~~~~l~s~~g~~d-----g~I~vw~~~s~ 411 (415)
... ..+.+||..+++-...-. .. .....+.+ +++.++. |+.+ +.|.+||..+.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~--GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVV--GGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEE--cCCcCCcccceeEEEeCCCC
Confidence 211 238889988765432211 11 11111222 4555454 4432 46788887653
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.025 Score=37.37 Aligned_cols=37 Identities=16% Similarity=0.487 Sum_probs=31.5
Q ss_pred eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 375 DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 375 ~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
...+.|..++|+|....|+. |+.+|.|.++++ +++++
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~--~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIAL--GTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCCcEEEEEECCCCCEEEE--EECCCeEEEEEC-CCcCc
Confidence 34567999999999999999 889999999999 66654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.23 Score=51.43 Aligned_cols=109 Identities=16% Similarity=0.295 Sum_probs=72.9
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCcEEEEEEc--CCCCcEEEEEcCCCCCeEEEEECC---
Q 014934 293 EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWS--PHLHGLLASGGGTADRCIRFWNTT--- 366 (415)
Q Consensus 293 ~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s--p~~~~llasggg~~d~~I~iwd~~--- 366 (415)
...-+.-+.-++.-++-+....+.|||.+.+....+-. ...+.|.++.|. |++..+|+.| ....|.++--.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG---f~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG---FPHHVLLYTQLRYD 107 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE---cCcEEEEEEccchh
Confidence 33444444444444444444579999999886543322 457789999885 6788788887 68888888542
Q ss_pred ------CCcEEEEee----CCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 367 ------TNTHLSCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 367 ------t~~~~~~~~----~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
+-..+..++ +..+|....|.++|..++.+ .+++.|++-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s----GNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS----GNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe----CCEEEEECC
Confidence 123445553 45789999999999876652 468888873
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.4 Score=40.87 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=121.6
Q ss_pred CCCCCCCCceeccCCCCCCCcceeEeecCC-C-cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEE
Q 014934 148 PRKVPRSPYKILDAPALQDDFYLNLVDWSS-H-NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV 225 (415)
Q Consensus 148 ~r~i~~~p~~~ld~~~l~~~~~i~~l~ws~-~-~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~ 225 (415)
.+.++..+..+-..|-....--+..+.|+| . .++++.....-.+|=...|++++.+.+..-...-.|+|..+|++.++
T Consensus 66 ~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~ 145 (316)
T COG3204 66 ARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIV 145 (316)
T ss_pred hhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEE
Confidence 334444444443333333344488999999 4 45566666666667667889988887754455677888888888888
Q ss_pred EECCCcEEEEECCCCeeeEE-------ec--CC-CccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc--EEEeccc-
Q 014934 226 GTSHGKVQIWDASRCKRVRT-------ME--GH-RLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF--VSKLSGH- 290 (415)
Q Consensus 226 g~~dg~V~iwd~~~~~~~~~-------l~--~h-~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h- 290 (415)
--.++.+.++.+.....+.. +. .+ ....-.++|+ .+.|+.+-.-.-+.|+.+...... ++....+
T Consensus 146 dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 146 DERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred ehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcc
Confidence 77788888887765422211 11 12 4567789998 366777666666666655433211 1111122
Q ss_pred ------cCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeEEeccCC---------CcEEEEEEcCCCCcEEEEE
Q 014934 291 ------KSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQPVLKYCEHT---------AAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 291 ------~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~---------~~V~~l~~sp~~~~llasg 352 (415)
-..|.++.|++ .+.+|+-+.+++.|.-.|... .++..+.-+. ...-.|+..++|. |++++
T Consensus 226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvS 301 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG-EVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVS 301 (316)
T ss_pred cccceEeeccccceecCCCCcEEEEecCCceEEEEecCC-CeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEe
Confidence 13478888886 556667777888888888653 3333332111 1234567776665 44433
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.42 Score=42.07 Aligned_cols=164 Identities=15% Similarity=0.118 Sum_probs=104.5
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEE-EEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCCEEE
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA-VGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLS 264 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la-~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~ 264 (415)
...|+.||+.+++......+. ...+..=-...-|+++. -.-.+|....+|..+.+++..+. ..+.-+.++..+..|+
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~d~~~Li 144 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWGLTSDDKNLI 144 (262)
T ss_pred cceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcceeeecCCcceE
Confidence 357999999999887766554 12333222222233332 23568888999999988887776 4566778888877788
Q ss_pred EEeCCCcEEEEECCCCCc---cEEEeccc-cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec----------
Q 014934 265 SGSRDKSILQRDIRAQED---FVSKLSGH-KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC---------- 330 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~~---~~~~~~~h-~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~---------- 330 (415)
.++...++...|..+... ......+. -..++-+.|- ||...|-.=.+..|...|..+|+.+..+.
T Consensus 145 msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~ 223 (262)
T COG3823 145 MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNL 223 (262)
T ss_pred eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCc
Confidence 877777888877765431 11122221 1123344443 66666666566666667777776654442
Q ss_pred --cCCCcEEEEEEcCCCCcEEEEE
Q 014934 331 --EHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 331 --~h~~~V~~l~~sp~~~~llasg 352 (415)
.|..-.+.||+.|.+..++++|
T Consensus 224 ~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 224 DKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccccccccceeecCcCCeEEEec
Confidence 2444568899999998888887
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.78 E-value=3.5 Score=44.28 Aligned_cols=191 Identities=14% Similarity=0.111 Sum_probs=110.2
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeEEecCCCc--------cEEEEEe------------------eCCEEEEEeCCCcEE
Q 014934 220 NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL--------RVGALAW------------------SSSLLSSGSRDKSIL 273 (415)
Q Consensus 220 g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~--------~V~~l~~------------------~~~~l~sgs~dg~I~ 273 (415)
+..|.+++.++.|.-.|..+++.+=.+..... .+..+++ ++..++.++.|+.++
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677777788888888888877665542211 0111222 234788899999999
Q ss_pred EEECCCCCccEEEeccccCCeE-------------EEEEeC--CCCEEEEEeC----------CCcEEEEECCCCceeEE
Q 014934 274 QRDIRAQEDFVSKLSGHKSEVC-------------GLKWSY--DNRELASGGN----------DNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 274 iwd~~~~~~~~~~~~~h~~~V~-------------~l~~sp--dg~~lasg~~----------dg~I~iwd~~~~~~~~~ 328 (415)
-.|.++++.+ ..+. ..+.|. .+.-.| .+..+++|+. +|.|+-+|+++++.+.+
T Consensus 274 ALDA~TGk~~-W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTGKLC-EDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCCCEE-EEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 9999988743 2221 111111 111122 2345666643 68899999999999887
Q ss_pred eccC---------CC--------cE-EEEEEcCCCCcEEEEEc---------------CCCCCeEEEEECCCCcEEEEee
Q 014934 329 YCEH---------TA--------AV-KAIAWSPHLHGLLASGG---------------GTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 329 ~~~h---------~~--------~V-~~l~~sp~~~~llasgg---------------g~~d~~I~iwd~~t~~~~~~~~ 375 (415)
+..- .+ .+ ...++.+....+++-.| ....+.|.-.|..||+....++
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence 7421 00 01 12344444332222111 0124567778889999877665
Q ss_pred C-C---------CCEEEEEECC-CCC---eEEEEEecCCCcEEEEECCCCccc
Q 014934 376 T-G---------SQVCNLVWSK-NVN---ELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 376 ~-~---------~~V~~l~~s~-~~~---~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+ . .+..=+.+.. +|+ .++. +..+|.+.+.|-.+++.+
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~--~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVA--PTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCcEeeEEEE--ECCCCEEEEEECCCCCEE
Confidence 3 1 1122222333 553 3444 889999999999988764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.86 Score=40.88 Aligned_cols=143 Identities=12% Similarity=0.052 Sum_probs=87.1
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCC--------ccEEEEEeeC---CEEEEEeCCCcEEEEE-
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR--------LRVGALAWSS---SLLSSGSRDKSILQRD- 276 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~--------~~V~~l~~~~---~~l~sgs~dg~I~iwd- 276 (415)
.....-..+|+|++. .|...-.=.++....+....-+.+|. .--+.++|+. .+.++-+.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred cccccCccCCCCcee-eeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 445566778999984 34432111122222222222233332 2335677872 3556667777787777
Q ss_pred -CCCCC----ccEEEecc----ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCC-C
Q 014934 277 -IRAQE----DFVSKLSG----HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL-H 346 (415)
Q Consensus 277 -~~~~~----~~~~~~~~----h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~-~ 346 (415)
..++. ..+..+.. ....--+++...+|++.++.-+.++|...|..+++.+.++.-....|++++|---+ .
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d 267 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLD 267 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCcc
Confidence 44332 12222221 12234566777789999999999999999999999999999889999999997432 2
Q ss_pred cEEEEE
Q 014934 347 GLLASG 352 (415)
Q Consensus 347 ~llasg 352 (415)
.+++++
T Consensus 268 ~~yvT~ 273 (310)
T KOG4499|consen 268 ILYVTT 273 (310)
T ss_pred EEEEEe
Confidence 344544
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.73 E-value=2.3 Score=41.87 Aligned_cols=210 Identities=10% Similarity=0.118 Sum_probs=100.3
Q ss_pred CCeEEeEecCCC-CCeEEEEEc-----------CCCCeEEEEE-CCCcEEEEECCC----CeeeEEecC---CC------
Q 014934 197 SKVTKLCDLGID-DSVCSVGWA-----------NRNTHLAVGT-SHGKVQIWDASR----CKRVRTMEG---HR------ 250 (415)
Q Consensus 197 ~~~~~~~~~~~~-~~V~~v~~s-----------p~g~~la~g~-~dg~V~iwd~~~----~~~~~~l~~---h~------ 250 (415)
++++..+...+. ++....-|+ .+.++|++.+ .++.|.|+|+.+ .+..++++. +.
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~ 131 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR 131 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC
Confidence 466666665543 566666665 2345666665 688999999974 345555542 11
Q ss_pred -ccEEEEEeeCCEEEEEe--CC----CcEEEEECCCCCccEEEecccc---CCeEEEEEeCCCCEEEEEeC---------
Q 014934 251 -LRVGALAWSSSLLSSGS--RD----KSILQRDIRAQEDFVSKLSGHK---SEVCGLKWSYDNRELASGGN--------- 311 (415)
Q Consensus 251 -~~V~~l~~~~~~l~sgs--~d----g~I~iwd~~~~~~~~~~~~~h~---~~V~~l~~spdg~~lasg~~--------- 311 (415)
..+.|+. ++++++++- .+ |-+.+.|-++.+ ......... .--..+-|.|..+.++|...
T Consensus 132 PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~-v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~G 209 (461)
T PF05694_consen 132 PHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFE-VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKG 209 (461)
T ss_dssp EEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT---EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT-
T ss_pred CceeeecC-CccEEEEeccCCCCCCCCcEEEEcCcccc-ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccC
Confidence 1122222 245666642 22 347777777654 344443321 23456778888888887532
Q ss_pred -----------CCcEEEEECCCCceeEEeccCC--CcEEEEEEc--CCCCcEEEEEcCCCCCeEEEE-ECCCCcE----E
Q 014934 312 -----------DNRLFVWNQHSTQPVLKYCEHT--AAVKAIAWS--PHLHGLLASGGGTADRCIRFW-NTTTNTH----L 371 (415)
Q Consensus 312 -----------dg~I~iwd~~~~~~~~~~~~h~--~~V~~l~~s--p~~~~llasggg~~d~~I~iw-d~~t~~~----~ 371 (415)
-.+|.+||+.+.+.++++.--. ..+..|.|. |...+=++.+. ....|..| ....++- +
T Consensus 210 f~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a--Lss~i~~~~k~~~g~W~a~kV 287 (461)
T PF05694_consen 210 FNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA--LSSSIWRFYKDDDGEWAAEKV 287 (461)
T ss_dssp --TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEEEEEEE
T ss_pred CChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe--ccceEEEEEEcCCCCeeeeEE
Confidence 3479999999999999986432 235566664 44444444443 45555544 3344431 1
Q ss_pred EEeeC------------------CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 372 SCMDT------------------GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 372 ~~~~~------------------~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
-.+.. ..-|+.+..|.|.++|..+ ....|.|+.||+...
T Consensus 288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs-~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVS-NWLHGDVRQYDISDP 344 (461)
T ss_dssp EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEE-ETTTTEEEEEE-SST
T ss_pred EECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEE-cccCCcEEEEecCCC
Confidence 12211 2347899999999999887 578999999999764
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.75 Score=46.79 Aligned_cols=171 Identities=14% Similarity=0.066 Sum_probs=88.0
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC--CcEEEEECCCCe--eeEEecCCCccEEEEEeeCCEE
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH--GKVQIWDASRCK--RVRTMEGHRLRVGALAWSSSLL 263 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d--g~V~iwd~~~~~--~~~~l~~h~~~V~~l~~~~~~l 263 (415)
.+..||..+++............-.+++ .-+|...++|+.+ ..+..||..+++ .+..+.........+..++.+.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IY 366 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIY 366 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEE
Confidence 5788998887766554432211112222 2467788888764 358889876643 2223332222334445567777
Q ss_pred EEEeCCC---cEEEEECCCCCccEEEecc---ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeE--EeccCCCc
Q 014934 264 SSGSRDK---SILQRDIRAQEDFVSKLSG---HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL--KYCEHTAA 335 (415)
Q Consensus 264 ~sgs~dg---~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~--~~~~h~~~ 335 (415)
+.||.++ .+..||.++.. ...... .......+ .-++.+.+.|+ .+.+||..+.+-.. .+......
T Consensus 367 viGG~~~~~~~ve~ydp~~~~--W~~~~~m~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~ 439 (480)
T PHA02790 367 VIGGHSETDTTTEYLLPNHDQ--WQFGPSTYYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDN 439 (480)
T ss_pred EecCcCCCCccEEEEeCCCCE--EEeCCCCCCccccceEE--EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccc
Confidence 8887654 46788887654 111111 11111222 23566777774 47789987654322 12111122
Q ss_pred EEEEEEcCCCCcEEEEEcCCC---CCeEEEEECCCCc
Q 014934 336 VKAIAWSPHLHGLLASGGGTA---DRCIRFWNTTTNT 369 (415)
Q Consensus 336 V~~l~~sp~~~~llasggg~~---d~~I~iwd~~t~~ 369 (415)
...+. . ++ .+++.||... -..+..||..+++
T Consensus 440 ~~~~v-~-~~-~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 440 PELII-V-DN-KLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred cEEEE-E-CC-EEEEECCcCCCcccceEEEEECCCCe
Confidence 22222 2 33 4888876211 1346666666554
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=1.8 Score=40.00 Aligned_cols=215 Identities=15% Similarity=0.131 Sum_probs=125.4
Q ss_pred CCCeEEeEecCCCCCeEEEEEcCCC-CeEEEEECCCc-EEEEECCCCeeeEEecCCCcc--EEEEEee--CCEEEEEeCC
Q 014934 196 SSKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGK-VQIWDASRCKRVRTMEGHRLR--VGALAWS--SSLLSSGSRD 269 (415)
Q Consensus 196 ~~~~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~dg~-V~iwd~~~~~~~~~l~~h~~~--V~~l~~~--~~~l~sgs~d 269 (415)
.|+++....+ ......|+++|.- .-++.+-.-|+ ..++|....+...++....++ -..=.|+ +.+|...-.|
T Consensus 57 aGk~v~~~~l--paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 57 AGKIVFATAL--PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred CCceeeeeec--ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence 3555444433 2445667888854 45666666565 578888877665555322111 1112344 5666665443
Q ss_pred -----CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC------C-C-----------cEEEEECCCCcee
Q 014934 270 -----KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN------D-N-----------RLFVWNQHSTQPV 326 (415)
Q Consensus 270 -----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~------d-g-----------~I~iwd~~~~~~~ 326 (415)
|.|-+||.+..-..+..+..|.-.-..+.|.+||+.|+.+.. | | .+.+.|..++..+
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~li 214 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI 214 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchh
Confidence 679999999776667778888888889999999999988643 0 1 2333444444443
Q ss_pred EEec----cCCCcEEEEEEcCCCCcEEEEEc---CCCCCeEEEEECCCCcEEEEeeC--------CCCEEEEEECCCCCe
Q 014934 327 LKYC----EHTAAVKAIAWSPHLHGLLASGG---GTADRCIRFWNTTTNTHLSCMDT--------GSQVCNLVWSKNVNE 391 (415)
Q Consensus 327 ~~~~----~h~~~V~~l~~sp~~~~llasgg---g~~d~~I~iwd~~t~~~~~~~~~--------~~~V~~l~~s~~~~~ 391 (415)
.+.. .+.-.|..++.-++|. +++.+- ...|---.+=-...|+.+.-++. ...|-+++.+.+...
T Consensus 215 ekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~gl 293 (366)
T COG3490 215 EKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGL 293 (366)
T ss_pred hhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCe
Confidence 3221 2344577777777776 333221 00111111212233444444432 244677888877666
Q ss_pred EEEEEecCCCcEEEEECCCCccc
Q 014934 392 LVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
++.+ .-..|...+||..++.-+
T Consensus 294 V~lT-SP~GN~~vi~da~tG~vv 315 (366)
T COG3490 294 VALT-SPRGNRAVIWDAATGAVV 315 (366)
T ss_pred EEEe-cCCCCeEEEEEcCCCcEE
Confidence 6665 456778899999987643
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=2.5 Score=40.73 Aligned_cols=220 Identities=12% Similarity=0.123 Sum_probs=108.8
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCe-EEeEe-c-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC---e
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKV-TKLCD-L-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---K 241 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~-~~~~~-~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~---~ 241 (415)
.+..|.|.. ++.+++|.++.|+.= .+.|+. ..... + .....+.++.|.++ ..+++| ..|.|.. ....+ +
T Consensus 47 ~l~~v~F~d~~~g~avG~~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~i~~-S~DgG~tW~ 122 (334)
T PRK13684 47 NLLDIAFTDPNHGWLVGSNRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSLLLH-TTDGGKNWT 122 (334)
T ss_pred ceEEEEEeCCCcEEEEECCCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCceEEE-ECCCCCCCe
Confidence 355566654 777888877655432 222322 22111 1 12234778887643 344544 4444322 11212 2
Q ss_pred eeEE---ecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE-
Q 014934 242 RVRT---MEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV- 317 (415)
Q Consensus 242 ~~~~---l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~i- 317 (415)
.+.. +.++. ....+..+..+..++..|.|..-+- .++.-......-...+.++.+.|++.+++++. .|.+..
T Consensus 123 ~~~~~~~~~~~~--~~i~~~~~~~~~~~g~~G~i~~S~D-gG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i~~s 198 (334)
T PRK13684 123 RIPLSEKLPGSP--YLITALGPGTAEMATNVGAIYRTTD-GGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNFYST 198 (334)
T ss_pred EccCCcCCCCCc--eEEEEECCCcceeeeccceEEEECC-CCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceEEEE
Confidence 2211 11222 2222333443444455555543322 22222222223345688999999887766654 454443
Q ss_pred EECCCCceeEEe-ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-----CCCEEEEEECCCCCe
Q 014934 318 WNQHSTQPVLKY-CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-----GSQVCNLVWSKNVNE 391 (415)
Q Consensus 318 wd~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~-----~~~V~~l~~s~~~~~ 391 (415)
+|- .++.-... ..-...++++++.++++ +++.+ ..|.+++=....|.....+.. ...+..+.+.+++..
T Consensus 199 ~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg---~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~ 273 (334)
T PRK13684 199 WEP-GQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA---RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEI 273 (334)
T ss_pred cCC-CCCeEEEeeCCCcccceeeeEcCCCC-EEEEe---cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCE
Confidence 222 22222222 23446789999999987 55555 357665433455554433322 234788899998876
Q ss_pred EEEEEecCCCcEE
Q 014934 392 LVSTHGYSQNQII 404 (415)
Q Consensus 392 l~s~~g~~dg~I~ 404 (415)
+++ | .+|.|.
T Consensus 274 ~~~--G-~~G~v~ 283 (334)
T PRK13684 274 WAG--G-GNGTLL 283 (334)
T ss_pred EEE--c-CCCeEE
Confidence 666 4 455443
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.017 Score=60.36 Aligned_cols=152 Identities=14% Similarity=0.221 Sum_probs=91.4
Q ss_pred CeEEEEECC--CCCeEEeEec----CCCCCeEEEEEcC---CCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEE
Q 014934 187 NCVYLWNAC--SSKVTKLCDL----GIDDSVCSVGWAN---RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALA 257 (415)
Q Consensus 187 ~~V~iwd~~--~~~~~~~~~~----~~~~~V~~v~~sp---~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~ 257 (415)
|.+.+|++. .|++...+.+ .....+.-|.|.| +.-++..+..+|.|++..+.+... ..+.+|..++..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 567777754 3443322221 2234556666665 567888888899998887765433 44556888888887
Q ss_pred ee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC-----CCCceeEEecc
Q 014934 258 WS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ-----HSTQPVLKYCE 331 (415)
Q Consensus 258 ~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~-----~~~~~~~~~~~ 331 (415)
+- ..++...+ .+|||..||.++.||.++.|-+ ..-++++..+.
T Consensus 232 ~~~~g~~~l~~-------------------------------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkp 280 (1283)
T KOG1916|consen 232 FFAEGVLKLAS-------------------------------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKP 280 (1283)
T ss_pred HHhhchhhhee-------------------------------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCC
Confidence 64 22222221 7899999999999997766654 34456677777
Q ss_pred CCCcEE-EEEEcCC-------CCc-EEEEEcCCCCCeEEEEECCCCcEE
Q 014934 332 HTAAVK-AIAWSPH-------LHG-LLASGGGTADRCIRFWNTTTNTHL 371 (415)
Q Consensus 332 h~~~V~-~l~~sp~-------~~~-llasggg~~d~~I~iwd~~t~~~~ 371 (415)
|.+.-. |.-|+.+ +.+ +++++. ...+.+++|.....+|+
T Consensus 281 hd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt-d~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 281 HDKHPRVCWLCHKQEILVVSIGKWVLRITTT-DVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCCceeeeeccccccCCccceeEEEEecc-cCCcceeEeeccchhhh
Confidence 774322 2222221 112 233332 25678999988777665
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.38 E-value=2.6 Score=39.98 Aligned_cols=230 Identities=15% Similarity=0.158 Sum_probs=108.7
Q ss_pred CCCceeccCCCCCCCcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCC----CCCeEEEEEcCCCCeEEEEE
Q 014934 153 RSPYKILDAPALQDDFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGI----DDSVCSVGWANRNTHLAVGT 227 (415)
Q Consensus 153 ~~p~~~ld~~~l~~~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~----~~~V~~v~~sp~g~~la~g~ 227 (415)
..+.+.++.|. +..+..|.|.. +.-.++|..+.|. -..+.|+.=....... .-...+|.|.. ...+++|
T Consensus 5 ~~~W~~v~l~t---~~~l~dV~F~d~~~G~~VG~~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG- 78 (302)
T PF14870_consen 5 GNSWQQVSLPT---DKPLLDVAFVDPNHGWAVGAYGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVG- 78 (302)
T ss_dssp S--EEEEE-S----SS-EEEEEESSSS-EEEEETTTEEE-EESSTTSS-EE-----S-----EEEEEEEET-TEEEEEE-
T ss_pred CCCcEEeecCC---CCceEEEEEecCCEEEEEecCCEEE-EECCCCccccccccCCCccceeeEEEEEecC-CceEEEc-
Confidence 34455555442 33677788876 7778888777543 2333343222221111 12366777754 3344544
Q ss_pred CCCcEEEEECCCCeeeEEec---CCCccEEEE-EeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCC
Q 014934 228 SHGKVQIWDASRCKRVRTME---GHRLRVGAL-AWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303 (415)
Q Consensus 228 ~dg~V~iwd~~~~~~~~~l~---~h~~~V~~l-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 303 (415)
..| +.+.-...++.-..+. .-.+....+ +..+......+..|.|+.-. ..+..-......-.+.+..+.-++||
T Consensus 79 ~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG 156 (302)
T PF14870_consen 79 EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDG 156 (302)
T ss_dssp ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS
T ss_pred CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCC
Confidence 445 3344444443333321 122223333 33455555556666654432 22332333344555778889899999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE-CCCCcEEEE----ee-CC
Q 014934 304 RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN-TTTNTHLSC----MD-TG 377 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd-~~t~~~~~~----~~-~~ 377 (415)
+++|++..-+.+.-||--...-...-..-...|.++.|.|++. |.+.+ ..+.|++=+ ....+.... +. .+
T Consensus 157 ~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~~~---~Gg~~~~s~~~~~~~~w~~~~~~~~~~~ 232 (302)
T PF14870_consen 157 RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWMLA---RGGQIQFSDDPDDGETWSEPIIPIKTNG 232 (302)
T ss_dssp -EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEEEE---TTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC-EEEEe---CCcEEEEccCCCCccccccccCCcccCc
Confidence 9999987766666787543222222224567899999999976 54444 468888877 223333222 11 23
Q ss_pred CCEEEEEECCCCCeEEE
Q 014934 378 SQVCNLVWSKNVNELVS 394 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s 394 (415)
..+..++|.+++...++
T Consensus 233 ~~~ld~a~~~~~~~wa~ 249 (302)
T PF14870_consen 233 YGILDLAYRPPNEIWAV 249 (302)
T ss_dssp S-EEEEEESSSS-EEEE
T ss_pred eeeEEEEecCCCCEEEE
Confidence 34899999999887776
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=3 Score=40.25 Aligned_cols=229 Identities=11% Similarity=0.043 Sum_probs=117.6
Q ss_pred CcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecC--CCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLG--IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~--~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
++.++.+.+.+++.++++..+.|+.- .+.|+.-...... .......+.....+..+++ +..|.|.. ....++.-.
T Consensus 89 ~~~l~~v~~~~~~~~~~G~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-g~~G~i~~-S~DgG~tW~ 165 (334)
T PRK13684 89 NFRLISISFKGDEGWIVGQPSLLLHT-TDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMA-TNVGAIYR-TTDGGKNWE 165 (334)
T ss_pred ccceeeeEEcCCcEEEeCCCceEEEE-CCCCCCCeEccCCcCCCCCceEEEEECCCcceee-eccceEEE-ECCCCCCce
Confidence 34567777776666677765555443 2233322221111 1112222222222333333 34443322 112232222
Q ss_pred Eec-CCCccEEEEEeeC-CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 245 TME-GHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 245 ~l~-~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
.+. .-...+.++.+.+ ..++..+..|.+..-.-..+.........-...+.++.+.++++.+++| ..|.+.+=....
T Consensus 166 ~~~~~~~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~ 244 (334)
T PRK13684 166 ALVEDAAGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD 244 (334)
T ss_pred eCcCCCcceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC
Confidence 222 2245677787763 4555556667665421111221222223344678999999999887765 457654323334
Q ss_pred CceeEEecc----CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC----CCCEEEEEECCCCCeEEE
Q 014934 323 TQPVLKYCE----HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT----GSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 323 ~~~~~~~~~----h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~----~~~V~~l~~s~~~~~l~s 394 (415)
+..-..... -...+.++++.|++. +++.+ .+|.|. .....|+....+.. ......+.|..+++.+++
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G---~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGE-IWAGG---GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL 319 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCC-EEEEc---CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE
Confidence 432222211 123578899999775 66665 467554 44555655444431 235778888888877776
Q ss_pred EEecCCCcEEEEE
Q 014934 395 THGYSQNQIIVWR 407 (415)
Q Consensus 395 ~~g~~dg~I~vw~ 407 (415)
| ..|.|..|+
T Consensus 320 --G-~~G~il~~~ 329 (334)
T PRK13684 320 --G-QRGVLLRYV 329 (334)
T ss_pred --C-CCceEEEec
Confidence 5 678887776
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=95.13 E-value=3.6 Score=40.23 Aligned_cols=195 Identities=13% Similarity=0.039 Sum_probs=102.8
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCC-CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCc--cEE
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL--RVG 254 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~-~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~--~V~ 254 (415)
+.+.+...++.|+-.|..++...-...... ...+.+-.+..+|+ |.+++.+|.+..+|..+++.+-....... ...
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 455555567788888888877543222111 11122222222666 77789999899999988887776665441 111
Q ss_pred EEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecc--ccCCeEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeEEec
Q 014934 255 ALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSG--HKSEVCGLKWSYDNRELASGGN--DNRLFVWNQHSTQPVLKYC 330 (415)
Q Consensus 255 ~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~lasg~~--dg~I~iwd~~~~~~~~~~~ 330 (415)
........+..++.++.+...|..++......... -...+.+-....++ .+..+.. ++.+.-.|..++.......
T Consensus 148 ~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 148 PPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred CcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeeee
Confidence 11112345555557888888888877632221111 01111111112233 3444444 5677778888887766532
Q ss_pred cCC----CcEEEEEEcCCC-----CcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC
Q 014934 331 EHT----AAVKAIAWSPHL-----HGLLASGGGTADRCIRFWNTTTNTHLSCMDTG 377 (415)
Q Consensus 331 ~h~----~~V~~l~~sp~~-----~~llasggg~~d~~I~iwd~~t~~~~~~~~~~ 377 (415)
.+. ..+........+ ..++. + ..++.+...|..+|+.+......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~-~--~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYA-G--SYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEE-E--ecCCeEEEEEcCCCceEEEEecc
Confidence 111 011001111111 11222 2 25677888899999988887653
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.33 Score=48.10 Aligned_cols=141 Identities=15% Similarity=0.142 Sum_probs=93.8
Q ss_pred CCCeEE-EEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC---------CEEEEEeCCCcEEEEECCCCCccEEEec
Q 014934 219 RNTHLA-VGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---------SLLSSGSRDKSILQRDIRAQEDFVSKLS 288 (415)
Q Consensus 219 ~g~~la-~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~---------~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 288 (415)
+..+|. .|.....+.-.|++.|+.+.....|... -+.++| ..-++|-.+..|.-.|.|.....+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~- 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV- 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-
Confidence 344333 3444456777788889998888877665 344442 345566677778888888665323222
Q ss_pred cccCCeEEEEEe----CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE
Q 014934 289 GHKSEVCGLKWS----YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 289 ~h~~~V~~l~~s----pdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd 364 (415)
.....++.-.|+ ....++|.|+..|-|++||--..+.-..+.+-..+|..|..+.+|.++||+| ...|.+-|
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC----k~yllL~d 630 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC----KNYLLLTD 630 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee----cceEEEEe
Confidence 122223323333 2456999999999999999655444445556678899999999999999998 46777777
Q ss_pred CC
Q 014934 365 TT 366 (415)
Q Consensus 365 ~~ 366 (415)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 64
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=6.2 Score=42.12 Aligned_cols=193 Identities=6% Similarity=0.011 Sum_probs=97.8
Q ss_pred CeEEEEEcCCCCeEEEEECC-C----cEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeC-C-----CcEEEEE
Q 014934 210 SVCSVGWANRNTHLAVGTSH-G----KVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSR-D-----KSILQRD 276 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~~d-g----~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~-d-----g~I~iwd 276 (415)
.+..+.|+|+|++||.+... | .|++.|+.+++.+...-.... ..++|. ++.|+.... + ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999999887543 2 488889888764322221221 458887 444444432 2 3688888
Q ss_pred CCCCCc-cEEEeccccCCeE-EEEEeCCCCEEEEEe---CCCcEEEEECC--CCceeEEeccCCCcEEEEEEcCCCCcEE
Q 014934 277 IRAQED-FVSKLSGHKSEVC-GLKWSYDNRELASGG---NDNRLFVWNQH--STQPVLKYCEHTAAVKAIAWSPHLHGLL 349 (415)
Q Consensus 277 ~~~~~~-~~~~~~~h~~~V~-~l~~spdg~~lasg~---~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~sp~~~~ll 349 (415)
+.++.. -...+........ .+..+.++++++..+ .++.+.+|+.. ++.+...+.........+. +..+..++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence 887731 2223332222233 233344888766543 34579999953 3333222222222222222 33333333
Q ss_pred EEEcCCCCCeEEEEECC-CCcEEEEeeC--CCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 350 ASGGGTADRCIRFWNTT-TNTHLSCMDT--GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 350 asggg~~d~~I~iwd~~-t~~~~~~~~~--~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
.+..+.....|...++. .++....+.. ...|..+.+. ++.|+.. ...++.-.++-+
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~-~~~~g~~~l~~~ 343 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVE-ERQRGLTSLRQI 343 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEE-EEeCCEEEEEEE
Confidence 33322233445555555 2322222333 2357777777 3455543 345555444443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.86 Score=47.30 Aligned_cols=101 Identities=14% Similarity=0.217 Sum_probs=66.9
Q ss_pred CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEe--CCCCEEEEEeCCCcEEEEECC-----C----CceeEEe
Q 014934 261 SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS--YDNRELASGGNDNRLFVWNQH-----S----TQPVLKY 329 (415)
Q Consensus 261 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~lasg~~dg~I~iwd~~-----~----~~~~~~~ 329 (415)
...++-+....+.|||.+...-...........|..+.|. |+|+.+++.|-.+.|.+|--. + ..++.++
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 4444444455799999987752122222446789999996 699999888889999998642 1 1233333
Q ss_pred --ccCC-CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 330 --CEHT-AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 330 --~~h~-~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
..|+ .+|.+..|.++|. +++.+ ++.+.|+|-.
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~-LvV~s----GNqlfv~dk~ 156 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGT-LVVGS----GNQLFVFDKW 156 (631)
T ss_pred EeecCCCCCccceeEecCCe-EEEEe----CCEEEEECCC
Confidence 3444 5789999999986 44433 4678888643
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.75 Score=45.10 Aligned_cols=134 Identities=10% Similarity=0.053 Sum_probs=87.9
Q ss_pred ecCC-CcEEEEEcCCeEEEEECCC--CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee----EEe
Q 014934 174 DWSS-HNVLAVGLGNCVYLWNACS--SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV----RTM 246 (415)
Q Consensus 174 ~ws~-~~~la~~~d~~V~iwd~~~--~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~----~~l 246 (415)
-|.. ++.|.+...|.+.-|-... ..+...+.....++|.++.|++|.+.||+--.+.+|.+++....+.. .+.
T Consensus 29 FfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c 108 (657)
T KOG2377|consen 29 FFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC 108 (657)
T ss_pred eeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh
Confidence 3444 3444444344444444332 23333333355679999999999999999999999999997433222 222
Q ss_pred cCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEE
Q 014934 247 EGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELAS 308 (415)
Q Consensus 247 ~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 308 (415)
+.....|....|. ...++..+..| +-+|-+......++..+.|+..|.-..|.++.+.++.
T Consensus 109 k~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 109 KTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred ccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEee
Confidence 3345668899998 45566555555 6777666555556777788889999999998876443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.56 E-value=2 Score=42.06 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=78.2
Q ss_pred CCeEEEEEcCCCCeEEEEE-----------CCC-cEEEEECCC--Ce--eeEEecCCCccEEEEEeeCCEEEEEeCCCcE
Q 014934 209 DSVCSVGWANRNTHLAVGT-----------SHG-KVQIWDASR--CK--RVRTMEGHRLRVGALAWSSSLLSSGSRDKSI 272 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~-----------~dg-~V~iwd~~~--~~--~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I 272 (415)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........|++.++-|++++.....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~ 93 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDIL 93 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEE
Confidence 4567889999998766542 223 677776532 22 2233433334567788763226666555433
Q ss_pred EEEECCCC-----C--ccEEEecc----ccCCeEEEEEeCCCCEEEEEeCC-------------------CcEEEEECCC
Q 014934 273 LQRDIRAQ-----E--DFVSKLSG----HKSEVCGLKWSYDNRELASGGND-------------------NRLFVWNQHS 322 (415)
Q Consensus 273 ~iwd~~~~-----~--~~~~~~~~----h~~~V~~l~~spdg~~lasg~~d-------------------g~I~iwd~~~ 322 (415)
++.|.... . ..+..+.. +......++|.|||.+.++-+.. +.|.-+|...
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 44455321 1 11112222 23457889999999887764421 3455556554
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEE
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasg 352 (415)
++. ..+...-.....++|+|+|. ++++-
T Consensus 174 ~~~-e~~a~G~rnp~Gl~~d~~G~-l~~td 201 (367)
T TIGR02604 174 GKL-RVVAHGFQNPYGHSVDSWGD-VFFCD 201 (367)
T ss_pred CeE-EEEecCcCCCccceECCCCC-EEEEc
Confidence 433 22322223457899999886 66654
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.6 Score=45.38 Aligned_cols=174 Identities=13% Similarity=0.096 Sum_probs=88.5
Q ss_pred CCcEEEEECCCCeeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccE--EEeccccCCeEEEEEeCCCCE
Q 014934 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFV--SKLSGHKSEVCGLKWSYDNRE 305 (415)
Q Consensus 229 dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~h~~~V~~l~~spdg~~ 305 (415)
.-.|+||++. |+.+..+....+.+-.+.|+ .+.|++...||++++|++-...... .-.......|..+.+..+|
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 3458888864 55555544344478899999 6889999999999999986543111 1112223345555555555
Q ss_pred EEEEeCCCcEEEEECCCCceeEEecc-CCCcEEEEEE---cCCC-CcEEE-EEcCCCCC-eEEEEECCCCcEEEEee-CC
Q 014934 306 LASGGNDNRLFVWNQHSTQPVLKYCE-HTAAVKAIAW---SPHL-HGLLA-SGGGTADR-CIRFWNTTTNTHLSCMD-TG 377 (415)
Q Consensus 306 lasg~~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~---sp~~-~~lla-sggg~~d~-~I~iwd~~t~~~~~~~~-~~ 377 (415)
+|.-..+|++.+-+-.....+.++.. ........+| .|+. ..+++ ..- ..+ .+..-+..+.+. ..+. ..
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~--~v~~~~~q~~~~~~q~-~~~~~~~ 216 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV--AVGLHICQVEESRVQL-HALSWPN 216 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeech--hhhhcccceecccccc-cccCCCC
Confidence 33334455555443222222223322 1111111222 2221 11111 110 000 111111112222 2222 23
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+.+..+..|++.++|+. =...|.|.+-....
T Consensus 217 ~~~~ki~VS~n~~~laL--yt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLAL--YTETGKIWVVSIDL 247 (829)
T ss_pred ceEEEEEEcCCcceEEE--EecCCcEEEEecch
Confidence 67888999999999988 34678887776654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.28 E-value=4.4 Score=37.38 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=86.2
Q ss_pred CeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEE-CCCCCccEE
Q 014934 210 SVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRD-IRAQEDFVS 285 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd-~~~~~~~~~ 285 (415)
.+.+.+++++|+.+|... .++.-.||-...+.....+. ....+..-.|+ +...+....+....++. ...+.....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 689999999999777665 23334444433333333321 12256667777 34444445455555553 333322222
Q ss_pred Eeccc--cCCeEEEEEeCCCCEEEEEe---CCCcEEEEECC---CC------ceeEEeccCCCcEEEEEEcCCCCcEEEE
Q 014934 286 KLSGH--KSEVCGLKWSYDNRELASGG---NDNRLFVWNQH---ST------QPVLKYCEHTAAVKAIAWSPHLHGLLAS 351 (415)
Q Consensus 286 ~~~~h--~~~V~~l~~spdg~~lasg~---~dg~I~iwd~~---~~------~~~~~~~~h~~~V~~l~~sp~~~~llas 351 (415)
..... ...|..+.+||||..+|.-. .++.|.|--+. .+ .++.........+.+++|.+++. |++.
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-L~V~ 182 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-LVVL 182 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-EEEE
Confidence 22221 12899999999999988755 35777776543 22 12222223456889999999987 5554
Q ss_pred EcCCCCCeEEE-EEC
Q 014934 352 GGGTADRCIRF-WNT 365 (415)
Q Consensus 352 ggg~~d~~I~i-wd~ 365 (415)
+. ..+..+.. ...
T Consensus 183 ~~-~~~~~~~~~v~~ 196 (253)
T PF10647_consen 183 GR-SAGGPVVRLVSV 196 (253)
T ss_pred eC-CCCCceeEEEEc
Confidence 43 24444443 444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.27 E-value=7.9 Score=41.80 Aligned_cols=112 Identities=20% Similarity=0.264 Sum_probs=76.9
Q ss_pred CeEEEEEeCC-CCEEEEEeC----------CCcEEEEECCCCceeEEeccC--CCcEEEEEEcCCCCcEEEEEcCCCCCe
Q 014934 293 EVCGLKWSYD-NRELASGGN----------DNRLFVWNQHSTQPVLKYCEH--TAAVKAIAWSPHLHGLLASGGGTADRC 359 (415)
Q Consensus 293 ~V~~l~~spd-g~~lasg~~----------dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~sp~~~~llasggg~~d~~ 359 (415)
.|++..|..| +.++++|.. .|+|.||.......+.....+ .+.|.++. -.+..++|. -...
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~--~fngkllA~----In~~ 849 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV--EFNGKLLAG----INQS 849 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh--hhCCeEEEe----cCcE
Confidence 3556668877 677887753 477888887764444444333 34555543 333346664 4689
Q ss_pred EEEEECCCCcEEEEe-eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 360 IRFWNTTTNTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 360 I~iwd~~t~~~~~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
|++|+..+++.++.- .+...+..+...-.|.++++ |..-+.|.+-.|..++
T Consensus 850 vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~V--gDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 850 VRLYEWTTERELRIECNISNPIIALDLQVKGDEIAV--GDLMRSITLLQYKGDE 901 (1096)
T ss_pred EEEEEccccceehhhhcccCCeEEEEEEecCcEEEE--eeccceEEEEEEeccC
Confidence 999999988655433 35678888999999999999 8788888888777655
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=94.26 E-value=2.7 Score=40.95 Aligned_cols=158 Identities=15% Similarity=0.087 Sum_probs=86.2
Q ss_pred EECCCCeeeEEecCCCccEEEEEee-------C-CEEEEEeCCCc--EEEEECCCCCccEEEecccc-CCeEEEEEeCCC
Q 014934 235 WDASRCKRVRTMEGHRLRVGALAWS-------S-SLLSSGSRDKS--ILQRDIRAQEDFVSKLSGHK-SEVCGLKWSYDN 303 (415)
Q Consensus 235 wd~~~~~~~~~l~~h~~~V~~l~~~-------~-~~l~sgs~dg~--I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg 303 (415)
-|..+|-.+..+.........+-|. + .+|+++..||. +++.|+.+++ +..+.... ....+..++|+.
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~ 92 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDD 92 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTS
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCC
Confidence 4667787777777555545545443 3 45666666664 6677887776 44444332 223356778988
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEc--CCCCcEEEEEc--------------------CCCCCeEE
Q 014934 304 RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS--PHLHGLLASGG--------------------GTADRCIR 361 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s--p~~~~llasgg--------------------g~~d~~I~ 361 (415)
+.++-......|.-.|+.+.+....+.-....+-...|. .++. +++-.- ....+.|.
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~ 171 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIF 171 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEE
Confidence 888766666788999999987666665566666556664 3343 332210 01235577
Q ss_pred EEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 362 FWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 362 iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
-.|+.+|+....+.....+..+.|+|....+++-
T Consensus 172 ~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~f 205 (386)
T PF14583_consen 172 TIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMF 205 (386)
T ss_dssp EEETTT--EEEEEEESS-EEEEEEETTEEEEEEE
T ss_pred EEECCCCceeEEEecCccccCcccCCCCCCEEEE
Confidence 7789999887777778889999999987666553
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.11 E-value=5 Score=37.40 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=96.5
Q ss_pred CCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecccc-CCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc---
Q 014934 249 HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK-SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ--- 324 (415)
Q Consensus 249 h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~--- 324 (415)
-..-+..+.+++++...+..+.-+++.|+.++..+...-.-.. +--.+ |.-.|++..++..|.-+.+.|+.+.+
T Consensus 85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 3455777888899999999999999999998875443322111 22333 44468999888877778889987653
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC---cEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN---THLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~---~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
..-++......-..++.| |++-+++. .|+-+.+-|+... ..+...+++..+.++..+++.-+++.
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv 230 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV 230 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE
Confidence 233444444444667777 44566655 6888999998764 45556667778889999988877766
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.82 Score=45.20 Aligned_cols=86 Identities=12% Similarity=0.012 Sum_probs=59.5
Q ss_pred cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEE--EcCCC----------------CcEEE
Q 014934 289 GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIA--WSPHL----------------HGLLA 350 (415)
Q Consensus 289 ~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~--~sp~~----------------~~lla 350 (415)
.....+.+|+.+|++++.|+..+-|+|.++|+.++..++.+++...+-.+-. ..... ..|++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 3445688999999999999988889999999999888777766544321110 01110 11233
Q ss_pred EEcCCCCCeEEEEECCCCcEEEEeeC
Q 014934 351 SGGGTADRCIRFWNTTTNTHLSCMDT 376 (415)
Q Consensus 351 sggg~~d~~I~iwd~~t~~~~~~~~~ 376 (415)
-.. .-|.|.||.+++|..+..+..
T Consensus 385 yap--rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAP--RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred Eec--cCCeEEEEecCCCCEEEEEEe
Confidence 333 688999999999988877653
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.90 E-value=3.7 Score=42.89 Aligned_cols=214 Identities=14% Similarity=0.160 Sum_probs=109.1
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCC---CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGI---DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~---~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
.+-.+.|+. ..+|++..+|.|++|+....... ....+. ...|..+.+..+| +++-+.+|.|.+-.-.......
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie-~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~ 161 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIE-SNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLR 161 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhc-ccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhh
Confidence 466889999 77888889999999998654332 212211 2234444444455 4444556666554432222233
Q ss_pred EecC-CCccEEEEEee---CC----EEEEEe-CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcE
Q 014934 245 TMEG-HRLRVGALAWS---SS----LLSSGS-RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRL 315 (415)
Q Consensus 245 ~l~~-h~~~V~~l~~~---~~----~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I 315 (415)
.+.. ......+-+|. ++ .++-.. ..+ ..++...........+....+.+..+..||+.++||-=..+|.|
T Consensus 162 ~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i 240 (829)
T KOG2280|consen 162 KMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKI 240 (829)
T ss_pred hCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcE
Confidence 3332 11111123332 21 111111 111 11122222221122222223567889999999999999999999
Q ss_pred EEEECCCCceeEEecc-CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 316 FVWNQHSTQPVLKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
.+-+....+.+..+.. -...-..++|+-+.. ++.+ .+..+.+..-. |..+.-+..... . +.--+||-.+++
T Consensus 241 ~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnda-Vvl~----~e~~l~lvgp~-gd~V~f~yd~t~-~-l~~E~DGVRI~t 312 (829)
T KOG2280|consen 241 WVVSIDLSQILCEFNCTDHDPPKQMAWCGNDA-VVLS----WEVNLMLVGPP-GDSVQFYYDETA-I-LSAEVDGVRIIT 312 (829)
T ss_pred EEEecchhhhhhccCCCCCCchHhceeecCCc-eEEE----EeeeEEEEcCC-CCccccccCCCc-e-eeeccCeeEEec
Confidence 9999887777766652 222334788886543 2221 24444444332 222222211111 1 555566666665
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=93.85 E-value=2.4 Score=44.60 Aligned_cols=152 Identities=11% Similarity=0.139 Sum_probs=93.9
Q ss_pred cceeEeecCCCcEEEEEcCCeEEEEECCCCCeEE----eEec-----------------CCCCCeEEEEEcC--CCCeEE
Q 014934 168 FYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTK----LCDL-----------------GIDDSVCSVGWAN--RNTHLA 224 (415)
Q Consensus 168 ~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~----~~~~-----------------~~~~~V~~v~~sp--~g~~la 224 (415)
|.=|..+.+..++|.++.++.|+||+...-.... ...+ ...-.|+.+.... +...|+
T Consensus 39 fKNNLtalsq~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl 118 (717)
T PF08728_consen 39 FKNNLTALSQRNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLL 118 (717)
T ss_pred cccceeEEecCCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEE
Confidence 3344555555788888999999999986532211 0000 0011244444332 456899
Q ss_pred EEECCCcEEEEECCC-------C----e---------eeEEecCCCccEEEEEee----CCEEEEEeCCCcEEEEECCCC
Q 014934 225 VGTSHGKVQIWDASR-------C----K---------RVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQ 280 (415)
Q Consensus 225 ~g~~dg~V~iwd~~~-------~----~---------~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~ 280 (415)
+|..||.|.+|.+++ . + +.-.+ .-...+++++++ .++||+++....|.++-....
T Consensus 119 ~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~ 197 (717)
T PF08728_consen 119 LCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALV 197 (717)
T ss_pred EEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEecc
Confidence 999999999997621 1 0 00111 134578888887 468888888888888755442
Q ss_pred --CccEEEeccccCCeEEEEEeCCC---C---EEEEEeCCCcEEEEEC
Q 014934 281 --EDFVSKLSGHKSEVCGLKWSYDN---R---ELASGGNDNRLFVWNQ 320 (415)
Q Consensus 281 --~~~~~~~~~h~~~V~~l~~spdg---~---~lasg~~dg~I~iwd~ 320 (415)
......-..|...|-+|+|-++. . .|++++-.|.+.+|++
T Consensus 198 ~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 198 DERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11111122366689999997643 2 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.80 E-value=1.9 Score=43.09 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=55.7
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEe
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKL 287 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 287 (415)
-.|.-|..++.|..+|-.+.+|.+.++-.+....-..++.....|.|=.+. +..|++.+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-------------------- 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-------------------- 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC--------------------
Confidence 457778889999999999999976665544444444454444445554433 22222221
Q ss_pred ccccCCeEEEEEeCCC---CEEEEEeCCCcEEEEECCCC
Q 014934 288 SGHKSEVCGLKWSYDN---RELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 288 ~~h~~~V~~l~~spdg---~~lasg~~dg~I~iwd~~~~ 323 (415)
..-.+...+|+|+. ..|..-.+|+.|+|||+...
T Consensus 164 --~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 164 --TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred --CceeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 11134456677754 56666677788888887654
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=93.66 E-value=4.9 Score=35.76 Aligned_cols=145 Identities=14% Similarity=0.156 Sum_probs=86.2
Q ss_pred EEEeeC-CEEEEEeCCCcEEEEECCCCC-ccEEEeccccCCeEEEEEeCCCCEEEEEeCC------CcEEEE---ECC--
Q 014934 255 ALAWSS-SLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSYDNRELASGGND------NRLFVW---NQH-- 321 (415)
Q Consensus 255 ~l~~~~-~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spdg~~lasg~~d------g~I~iw---d~~-- 321 (415)
.++-.+ +.|+.+.....|.+|++.... .....+.. -+.|..+.++..|++|++--.+ ..+++| ...
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 344444 677666777889999998433 33444443 3789999999999999994322 245554 222
Q ss_pred CCceeE-Eecc---------------------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE-E---EEee
Q 014934 322 STQPVL-KYCE---------------------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH-L---SCMD 375 (415)
Q Consensus 322 ~~~~~~-~~~~---------------------h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~-~---~~~~ 375 (415)
..+++. ++-+ -...+.+++.+|-...|++.+ ++.+.+|.+..+.. . ..++
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~----~~~l~lf~l~~~~~~~~~~~~lD 176 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC----GNKLVLFTLKYQTIQSEKFSFLD 176 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc----CCEEEEEEEEEEEEecccccEEe
Confidence 112221 1112 234678899999877777754 68899998764432 1 1111
Q ss_pred -------C--CCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 376 -------T--GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 376 -------~--~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+ +-....+++. +.+++.. ++..+++.++.
T Consensus 177 Fe~~l~~~~~~~~p~~v~ic--~~yiA~~---s~~ev~Vlkl~ 214 (215)
T PF14761_consen 177 FERSLIDHIDNFKPTQVAIC--EGYIAVM---SDLEVLVLKLE 214 (215)
T ss_pred chhhhhheecCceEEEEEEE--eeEEEEe---cCCEEEEEEEe
Confidence 1 1223344443 4567663 46678887764
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.52 E-value=3.2 Score=40.60 Aligned_cols=120 Identities=14% Similarity=0.171 Sum_probs=63.7
Q ss_pred cEEEEECCCCC-c--cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC-----c--ee-EEecc----CCCc
Q 014934 271 SILQRDIRAQE-D--FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-----Q--PV-LKYCE----HTAA 335 (415)
Q Consensus 271 ~I~iwd~~~~~-~--~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~-----~--~~-~~~~~----h~~~ 335 (415)
.|.+++-..+. . ....+........+|++.++| +++ +......++.|.... + .+ ..+.. +...
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~ 125 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHS 125 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccc
Confidence 56666543221 1 123333333456889999988 444 444443334454321 1 12 12322 2345
Q ss_pred EEEEEEcCCCCcEEEEEcCCC-----------------CCeEEEEECCCCcEEEEeeCC-CCEEEEEECCCCCeEEE
Q 014934 336 VKAIAWSPHLHGLLASGGGTA-----------------DRCIRFWNTTTNTHLSCMDTG-SQVCNLVWSKNVNELVS 394 (415)
Q Consensus 336 V~~l~~sp~~~~llasggg~~-----------------d~~I~iwd~~t~~~~~~~~~~-~~V~~l~~s~~~~~l~s 394 (415)
...++|.|+|. |+++-+... .+.|.-++..+++. ..+..+ .....++|+++|+.+++
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEE
Confidence 78899999986 655543100 14455556555443 333333 33578999999988776
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.012 Score=57.57 Aligned_cols=133 Identities=17% Similarity=0.254 Sum_probs=96.9
Q ss_pred CeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEE
Q 014934 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSK 286 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~ 286 (415)
......|-+.+.-+++++.+..|..||-.. +...... ..+....|+|+ +..++.+-..+.+.+||+.+.......
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 344567888777799999999999999543 3332232 45567778887 345667778899999999765421111
Q ss_pred ec-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCC
Q 014934 287 LS-GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346 (415)
Q Consensus 287 ~~-~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~ 346 (415)
.. .|.... +.|++.+..++.|...|.+.|++..+.+.+...-.|...+++++|.+.+.
T Consensus 114 ~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~ 172 (615)
T KOG2247|consen 114 SGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY 172 (615)
T ss_pred ccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce
Confidence 11 122222 78999999999999999999999988887777755999999999999874
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=93.22 E-value=8.4 Score=37.13 Aligned_cols=42 Identities=14% Similarity=-0.027 Sum_probs=22.8
Q ss_pred eEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECC
Q 014934 188 CVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSH 229 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~d 229 (415)
.+..||..+.+...+... .....-.+....-+|+..++|+.+
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 488899888776554321 111111111113478888888764
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=93.12 E-value=4.2 Score=33.34 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=69.3
Q ss_pred EEEEcCCCCeEEEEECCCcEEEEECCCC--------eeeEEecCCCccEEEEEee-------CCEEEEEeCCCcEEEEEC
Q 014934 213 SVGWANRNTHLAVGTSHGKVQIWDASRC--------KRVRTMEGHRLRVGALAWS-------SSLLSSGSRDKSILQRDI 277 (415)
Q Consensus 213 ~v~~sp~g~~la~g~~dg~V~iwd~~~~--------~~~~~l~~h~~~V~~l~~~-------~~~l~sgs~dg~I~iwd~ 277 (415)
.-.|......|++++.-|+|.|++.... ..++.+. -...|++|+-. .+.|+.|+. ..+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 3456666667899999999999987533 2344444 45567777643 356777765 45999999
Q ss_pred CCCCccEEEeccccCCeEEEEEeC----CCCEEEEEeCCCcEEEEECCCCceeEE
Q 014934 278 RAQEDFVSKLSGHKSEVCGLKWSY----DNRELASGGNDNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 278 ~~~~~~~~~~~~h~~~V~~l~~sp----dg~~lasg~~dg~I~iwd~~~~~~~~~ 328 (415)
....... ++.-...|.++.+-. +..++++|+ +..|.-||....+...+
T Consensus 81 ~~N~d~F--yke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 81 ENNSDLF--YKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred ccCchhh--hhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 8876432 233345677777642 234444444 45677777655554444
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.074 Score=52.25 Aligned_cols=191 Identities=17% Similarity=0.284 Sum_probs=113.3
Q ss_pred ecCC-CcEEEEE--cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCC
Q 014934 174 DWSS-HNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR 250 (415)
Q Consensus 174 ~ws~-~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~ 250 (415)
+|.- +.++++- ..+.+++|++.+....+ ++++.+..-.-+.|++.+..+++|...|.+.|++..+.+.+..+..|.
T Consensus 81 ~wDkegdvlavlAek~~piylwd~n~eytqq-LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~ 159 (615)
T KOG2247|consen 81 AWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQ 159 (615)
T ss_pred hhccccchhhhhhhcCCCeeechhhhhhHHH-HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccc
Confidence 4555 4444443 45789999998754433 223333333337899999999999999999999998887776666699
Q ss_pred ccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeE--EE---EEeCCCCEEEEEeCCCcEEEE----EC
Q 014934 251 LRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVC--GL---KWSYDNRELASGGNDNRLFVW----NQ 320 (415)
Q Consensus 251 ~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~--~l---~~spdg~~lasg~~dg~I~iw----d~ 320 (415)
.++++++|. .++.+.++.|..+.+-...+.........+.....+ .+ .|..-|..+.+.-. |++.+. +-
T Consensus 160 RRgtq~av~lEd~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gKkhl~yak~nE 238 (615)
T KOG2247|consen 160 RRGTQIAVTLEDYVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GKKHLMYAKYNE 238 (615)
T ss_pred cceeEEEecccceeeecCcHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeee-cHHHHHHHhhcC
Confidence 999999999 578888888876655443332211111111111111 11 23334444443221 111111 11
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~ 370 (415)
..+..-..|+...+.+.++.|--||. ++. |..-+.|..-.+.+++.
T Consensus 239 ~D~pval~fq~~~gni~cyrwylDg~-i~i---gf~ag~iV~iS~h~aeL 284 (615)
T KOG2247|consen 239 LDEPVALQFQEKYGNIHCYRWYLDGY-ILI---GFDAGYIVSISAHNAEL 284 (615)
T ss_pred CCCccceEeeecCCceeEEEEecccc-ccc---cccceeEEEEeccchHH
Confidence 11222226666777889999998876 444 22456666666666553
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.51 Score=29.75 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=33.4
Q ss_pred CCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEEC
Q 014934 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWS 386 (415)
Q Consensus 343 p~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s 386 (415)
|+++.++++.- .++.|.++|..+++.+..+..+.....+.|+
T Consensus 1 pd~~~lyv~~~--~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNS--GSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeC--CCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 56777888875 6899999999999999988876656666653
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.53 Score=40.75 Aligned_cols=70 Identities=26% Similarity=0.434 Sum_probs=46.3
Q ss_pred ceeEeecCCCcEEEEEcCCeEEEEECCCCC-e-------------------E-----EeE------ec---C------CC
Q 014934 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSK-V-------------------T-----KLC------DL---G------ID 208 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~~d~~V~iwd~~~~~-~-------------------~-----~~~------~~---~------~~ 208 (415)
+.++++||.++.||++.+..|+|.+..+.. . . ..+ .. . ..
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~ 85 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISS 85 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccccc
Confidence 467999999999999999999999333211 0 0 000 00 0 01
Q ss_pred CCeEEEEEcCCC------CeEEEEECCCcEEEEECC
Q 014934 209 DSVCSVGWANRN------THLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 209 ~~V~~v~~sp~g------~~la~g~~dg~V~iwd~~ 238 (415)
..|.+++|||.| .+||+.+.+|.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 267788888843 367778888888888755
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.84 Score=41.15 Aligned_cols=71 Identities=7% Similarity=0.127 Sum_probs=48.0
Q ss_pred cEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEE------ec-------cccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 014934 252 RVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK------LS-------GHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 252 ~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~------~~-------~h~~~V~~l~~spdg~~lasg~~dg~I~iw 318 (415)
++..+..++++|++-+.+|.+++||+.+.+..... +. .....|..+.++.+|.-+++-+ +|..+.|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 45556666777888888888888888776522111 11 2446688888888888777665 4778999
Q ss_pred ECCCC
Q 014934 319 NQHST 323 (415)
Q Consensus 319 d~~~~ 323 (415)
|..-+
T Consensus 93 ~~~L~ 97 (219)
T PF07569_consen 93 SPDLG 97 (219)
T ss_pred ccccc
Confidence 87544
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=92.69 E-value=2.5 Score=45.03 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=51.3
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC----------Cce--e-EEe--------ccCCCcEEEEEEcCCC---C
Q 014934 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHS----------TQP--V-LKY--------CEHTAAVKAIAWSPHL---H 346 (415)
Q Consensus 291 ~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~----------~~~--~-~~~--------~~h~~~V~~l~~sp~~---~ 346 (415)
.-+|..|.++|+|.+||..|..| |.|-.+-. ++. . ..+ ..+...|..+.|+|.+ .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 35799999999999999998876 44444421 111 1 111 1345678999999985 5
Q ss_pred cEEEEEcCCCCCeEEEEECCCC
Q 014934 347 GLLASGGGTADRCIRFWNTTTN 368 (415)
Q Consensus 347 ~llasggg~~d~~I~iwd~~t~ 368 (415)
.|++-. .|++||+||+...
T Consensus 163 ~l~vLt---sdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLT---SDNTLRLYDISDP 181 (717)
T ss_pred eEEEEe---cCCEEEEEecCCC
Confidence 566655 5999999999753
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.54 E-value=5.9 Score=41.78 Aligned_cols=111 Identities=11% Similarity=0.091 Sum_probs=71.9
Q ss_pred cEEEEEee----CCEEEEEeCCCcEEEEECCC-------C----C--------ccEEEeccccCCeEEEEEe--CCCCEE
Q 014934 252 RVGALAWS----SSLLSSGSRDKSILQRDIRA-------Q----E--------DFVSKLSGHKSEVCGLKWS--YDNREL 306 (415)
Q Consensus 252 ~V~~l~~~----~~~l~sgs~dg~I~iwd~~~-------~----~--------~~~~~~~~h~~~V~~l~~s--pdg~~l 306 (415)
.|+.|... .++|+.|..||.|.+|.+.. . . .+...+ .....+++|+++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence 35555443 37899999999999997631 0 0 011112 234578999999 888999
Q ss_pred EEEeCCCcEEEEECCCC--ceeE-EeccCCCcEEEEEEcCCC-----CcEEEEEcCCCCCeEEEEEC
Q 014934 307 ASGGNDNRLFVWNQHST--QPVL-KYCEHTAAVKAIAWSPHL-----HGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~--~~~~-~~~~h~~~V~~l~~sp~~-----~~llasggg~~d~~I~iwd~ 365 (415)
|++++...|.||-.... +... .-..|...|-+|.|-++. ...+++++ -.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d--I~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD--ISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe--ccCcEEEEEE
Confidence 99999998888765431 1111 111356678899997764 12455554 7888888877
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=92.24 E-value=11 Score=36.20 Aligned_cols=133 Identities=12% Similarity=0.091 Sum_probs=67.2
Q ss_pred eEEEEECCCCCeEEeEecCC--CC---CeEEEEEcCCCCeEEEEECC-----CcEEEEECCCCe--eeEEecC---CCcc
Q 014934 188 CVYLWNACSSKVTKLCDLGI--DD---SVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCK--RVRTMEG---HRLR 252 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~--~~---~V~~v~~sp~g~~la~g~~d-----g~V~iwd~~~~~--~~~~l~~---h~~~ 252 (415)
.+++||..+.+......... .. ....+.+ ++++++.|+.+ ..|.+||..+.+ .+..+.. ...+
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 58899998877654432211 11 1222222 56677777653 257889987654 2222210 1111
Q ss_pred -EEEEE-eeCCEEEEEeCC-----------CcEEEEECCCCCccEEEecccc-----CCeEEEEEeCCCCEEEEEeCC--
Q 014934 253 -VGALA-WSSSLLSSGSRD-----------KSILQRDIRAQEDFVSKLSGHK-----SEVCGLKWSYDNRELASGGND-- 312 (415)
Q Consensus 253 -V~~l~-~~~~~l~sgs~d-----------g~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~spdg~~lasg~~d-- 312 (415)
-.+++ ..+.+++.|+.+ ..+.+||..+.. -..+.... ..-.+++. -++++++.|+.+
T Consensus 129 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~ 205 (341)
T PLN02153 129 TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK--WVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATS 205 (341)
T ss_pred eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe--EeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccc
Confidence 11222 335666777654 247788887654 22221111 11112222 256666665532
Q ss_pred -----------CcEEEEECCCCce
Q 014934 313 -----------NRLFVWNQHSTQP 325 (415)
Q Consensus 313 -----------g~I~iwd~~~~~~ 325 (415)
+.|.+||..+.+-
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred cccCCccceecCceEEEEcCCCcE
Confidence 4688999887643
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=92.24 E-value=20 Score=38.92 Aligned_cols=111 Identities=16% Similarity=0.213 Sum_probs=71.9
Q ss_pred CCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCC----ceeEEec-cCC----------CcEEEEEEcCCCCcEEEEEcCC
Q 014934 292 SEVCGLKWSY-DNRELASGGNDNRLFVWNQHST----QPVLKYC-EHT----------AAVKAIAWSPHLHGLLASGGGT 355 (415)
Q Consensus 292 ~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~----~~~~~~~-~h~----------~~V~~l~~sp~~~~llasggg~ 355 (415)
.+...++|+| +.+.||.....|...|||+... .....+. .+. ..-..|.|.++-+.||++.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~--- 222 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN--- 222 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc---
Confidence 4677899998 5678999999999999999211 1111111 111 2234788988877677753
Q ss_pred CCCeEEEEECCCCcEEE---EeeCCCCEEEEEECCC--CCeEEEEEecCCCcEEEEECCC
Q 014934 356 ADRCIRFWNTTTNTHLS---CMDTGSQVCNLVWSKN--VNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 356 ~d~~I~iwd~~t~~~~~---~~~~~~~V~~l~~s~~--~~~l~s~~g~~dg~I~vw~~~s 410 (415)
...+.++|+.+..... .....+.|..+.-++. +..++.| ...|...++..
T Consensus 223 -r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT----s~eiiw~~~~~ 277 (765)
T PF10214_consen 223 -RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT----SKEIIWLDVKS 277 (765)
T ss_pred -CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe----cCeEEEEEccC
Confidence 6889999999876533 2235567888888877 3334432 13566666554
|
These proteins are found in fungi. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=92.09 E-value=9.7 Score=35.08 Aligned_cols=140 Identities=15% Similarity=0.102 Sum_probs=82.5
Q ss_pred cEEEEEee--CCEEEEEe-CC--CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE-CCCCce
Q 014934 252 RVGALAWS--SSLLSSGS-RD--KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN-QHSTQP 325 (415)
Q Consensus 252 ~V~~l~~~--~~~l~sgs-~d--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd-~~~~~~ 325 (415)
.+...+++ +..++... .+ ..++++..... ....+.+ ..+....|++++...+....+....++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 56667776 44444433 23 34555443332 2222232 3788889999988887777677777763 333322
Q ss_pred e-EEeccC--CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC---CC--cE----EEEe-eCCCCEEEEEECCCCCeE
Q 014934 326 V-LKYCEH--TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT---TN--TH----LSCM-DTGSQVCNLVWSKNVNEL 392 (415)
Q Consensus 326 ~-~~~~~h--~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~---t~--~~----~~~~-~~~~~V~~l~~s~~~~~l 392 (415)
. ...... ...|.++.++|+|..+.+......++.|.+--+. .+ .. +... .....+..+.|..++..+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 1 222211 1289999999999987666532245777776543 23 11 1111 124678999999999887
Q ss_pred EEE
Q 014934 393 VST 395 (415)
Q Consensus 393 ~s~ 395 (415)
+.+
T Consensus 181 V~~ 183 (253)
T PF10647_consen 181 VLG 183 (253)
T ss_pred EEe
Confidence 774
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.92 E-value=6 Score=40.23 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=73.0
Q ss_pred CcEEEEEc-C--CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC---cEEEEECCCCeee--EEecCC
Q 014934 178 HNVLAVGL-G--NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG---KVQIWDASRCKRV--RTMEGH 249 (415)
Q Consensus 178 ~~~la~~~-d--~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg---~V~iwd~~~~~~~--~~l~~h 249 (415)
+.+.++|. + ..+..|+..+++....-.+.....-.++ ..-+|+..++|+.++ .+..||..+.+-. ..+...
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~ 397 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP 397 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence 44555553 2 4588888877766555443321111122 233688888887654 4788998765422 222222
Q ss_pred CccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecc--ccCCeEEEEEeCCCCEEEEEeCC-----CcEEEEECCC
Q 014934 250 RLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSG--HKSEVCGLKWSYDNRELASGGND-----NRLFVWNQHS 322 (415)
Q Consensus 250 ~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~lasg~~d-----g~I~iwd~~~ 322 (415)
......++.++.+.+.| |.+.+||.++.. ...+.. +...-.+++. -+|++.+.||.+ ..+.+||..+
T Consensus 398 r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~--W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 398 HYKSCALVFGRRLFLVG---RNAEFYCESSNT--WTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred cccceEEEECCEEEEEC---CceEEecCCCCc--EeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence 22233344556666666 357788887654 122111 1111122222 267788888754 3466677665
Q ss_pred Cc
Q 014934 323 TQ 324 (415)
Q Consensus 323 ~~ 324 (415)
.+
T Consensus 472 ~~ 473 (480)
T PHA02790 472 YS 473 (480)
T ss_pred Ce
Confidence 43
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.85 E-value=11 Score=35.22 Aligned_cols=146 Identities=12% Similarity=0.006 Sum_probs=93.4
Q ss_pred cCCCcEEEEEcCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC---eeeEEecCCC
Q 014934 175 WSSHNVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---KRVRTMEGHR 250 (415)
Q Consensus 175 ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~---~~~~~l~~h~ 250 (415)
++.+.+..+-.+..++|.|+.+..-..+..+ ...+.-.++.. .|++..++..+.-..+.|+.+. .....+....
T Consensus 94 vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~ 171 (370)
T COG5276 94 VSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPG 171 (370)
T ss_pred ecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCC
Confidence 3333333444556799999988654333322 22244555554 5888888775556778888654 3444555555
Q ss_pred ccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecccc-CCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 251 LRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK-SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 251 ~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
..-..++.++++...+..|+-+.+-|+..+..++..-.-.. ..+.++..+++-.+++..+ . -+.+-|..+.+
T Consensus 172 ~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~-e-gvlivd~s~~s 244 (370)
T COG5276 172 GDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD-E-GVLIVDVSGPS 244 (370)
T ss_pred CCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc-c-ceEEEecCCCC
Confidence 55678888999999999999999999998875543322222 3688888887666655543 2 36666665544
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.83 E-value=3.5 Score=41.36 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=45.4
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEC---------CCCceeEEe----------c-cCCCcEEEEEEcCCC---CcEE
Q 014934 293 EVCGLKWSYDNRELASGGNDNRLFVWNQ---------HSTQPVLKY----------C-EHTAAVKAIAWSPHL---HGLL 349 (415)
Q Consensus 293 ~V~~l~~spdg~~lasg~~dg~I~iwd~---------~~~~~~~~~----------~-~h~~~V~~l~~sp~~---~~ll 349 (415)
+|..+..++.|..+|..|.+|.+.++=. ++++++... . ...-.+..++|+|+. ..|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 5778888999999999999996554321 223322111 0 111235667888875 2344
Q ss_pred EEEcCCCCCeEEEEECCCCcE
Q 014934 350 ASGGGTADRCIRFWNTTTNTH 370 (415)
Q Consensus 350 asggg~~d~~I~iwd~~t~~~ 370 (415)
+-. .|..||+||+.....
T Consensus 185 iL~---sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 185 LLT---SDNVIRIYSLSEPTE 202 (741)
T ss_pred EEe---cCcEEEEEecCCcch
Confidence 433 478888888765543
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=91.79 E-value=12 Score=35.63 Aligned_cols=104 Identities=17% Similarity=0.146 Sum_probs=55.0
Q ss_pred CCCeEEEEECCC-----cEEEEECCCCee---eEEecC---CCccEEEEEeeCCEEEEEeCC-----CcEEEEECCCCCc
Q 014934 219 RNTHLAVGTSHG-----KVQIWDASRCKR---VRTMEG---HRLRVGALAWSSSLLSSGSRD-----KSILQRDIRAQED 282 (415)
Q Consensus 219 ~g~~la~g~~dg-----~V~iwd~~~~~~---~~~l~~---h~~~V~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~ 282 (415)
++.++++|+.++ .+..||+.+.+- ...+.. ......+....+.+.+.|+.. ..+..||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~- 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQE- 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCC-
Confidence 566777777543 467777766542 122221 111222333446666777642 358888988664
Q ss_pred cEEEecc-c-cCCeEEEEEeCCCCEEEEEeCCC----cEEEEECCCCc
Q 014934 283 FVSKLSG-H-KSEVCGLKWSYDNRELASGGNDN----RLFVWNQHSTQ 324 (415)
Q Consensus 283 ~~~~~~~-h-~~~V~~l~~spdg~~lasg~~dg----~I~iwd~~~~~ 324 (415)
-..+.. . .......+...++++.+.|+.++ .+.+||..+.+
T Consensus 151 -W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 -WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred -eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 222221 1 11112222234677888888764 35688987754
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=91.40 E-value=1.1 Score=28.91 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=26.6
Q ss_pred CcEEEEEEcCCCC--cEEEEEcCCCCCeEEEEECCCC
Q 014934 334 AAVKAIAWSPHLH--GLLASGGGTADRCIRFWNTTTN 368 (415)
Q Consensus 334 ~~V~~l~~sp~~~--~llasggg~~d~~I~iwd~~t~ 368 (415)
++|.++.|+|... .||+-.. .-+.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E--~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAE--HQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEc--cCCeEEEEEcccC
Confidence 4789999997654 5888775 6899999999953
|
It contains a characteristic DLL sequence motif. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.96 Score=29.10 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=26.1
Q ss_pred CCeEEEEEeCCC---CEEEEEeCCCcEEEEECCC
Q 014934 292 SEVCGLKWSYDN---RELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 292 ~~V~~l~~spdg---~~lasg~~dg~I~iwd~~~ 322 (415)
+.|.+++|+|+. .+||.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999854 4888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=91.09 E-value=4.5 Score=41.90 Aligned_cols=74 Identities=20% Similarity=0.174 Sum_probs=45.4
Q ss_pred eCCEEEEEeCCCcEEEEECCC---CCccEE-Ee-cc--------------------ccCCeEEEEEeC----CCCEEEEE
Q 014934 259 SSSLLSSGSRDKSILQRDIRA---QEDFVS-KL-SG--------------------HKSEVCGLKWSY----DNRELASG 309 (415)
Q Consensus 259 ~~~~l~sgs~dg~I~iwd~~~---~~~~~~-~~-~~--------------------h~~~V~~l~~sp----dg~~lasg 309 (415)
++..++.+..||.+....... ...... .. .. ....+..++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 567777778888877776554 111111 10 00 123455566666 77899999
Q ss_pred eCCCcEEEEECCCCceeEEeccC
Q 014934 310 GNDNRLFVWNQHSTQPVLKYCEH 332 (415)
Q Consensus 310 ~~dg~I~iwd~~~~~~~~~~~~h 332 (415)
+.|++|++||+.+++++....-.
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEETT
T ss_pred eCCCeEEEEECCCCeEEEEeccc
Confidence 99999999999999997776443
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=91.09 E-value=14 Score=34.85 Aligned_cols=197 Identities=10% Similarity=0.103 Sum_probs=113.1
Q ss_pred CeEEEEEcCCCCeEEEEECCCcEEEEECC------CC-eeeEEecC-----CCccEEEEEeeC--------------CEE
Q 014934 210 SVCSVGWANRNTHLAVGTSHGKVQIWDAS------RC-KRVRTMEG-----HRLRVGALAWSS--------------SLL 263 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~~dg~V~iwd~~------~~-~~~~~l~~-----h~~~V~~l~~~~--------------~~l 263 (415)
.-..|+++|.+.+-++....+...+||.. .. ..+.++.. .....+.+.|++ ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35689999999877777778899999986 12 23333331 234677888872 236
Q ss_pred EEEeCCCcEEEEECCCCCc----cEEEec-cccCC-eEEEEEeC--CCCEEEEE-eCCCcEEEEECCCCceeE--EeccC
Q 014934 264 SSGSRDKSILQRDIRAQED----FVSKLS-GHKSE-VCGLKWSY--DNRELASG-GNDNRLFVWNQHSTQPVL--KYCEH 332 (415)
Q Consensus 264 ~sgs~dg~I~iwd~~~~~~----~~~~~~-~h~~~-V~~l~~sp--dg~~lasg-~~dg~I~iwd~~~~~~~~--~~~~h 332 (415)
+.+++||+|.-|....... ....+. .-... -.++++.. .+.+|..+ -..++|.|||-.=.+... .|...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7889999999998543322 122222 11122 34566653 24555443 467889999854222110 01110
Q ss_pred CCcEEEEEEcCC-----CCcEEEEEc-----------CCCCCeEEEEECCCCcEEEEeeCCCC---EEEEEECC------
Q 014934 333 TAAVKAIAWSPH-----LHGLLASGG-----------GTADRCIRFWNTTTNTHLSCMDTGSQ---VCNLVWSK------ 387 (415)
Q Consensus 333 ~~~V~~l~~sp~-----~~~llasgg-----------g~~d~~I~iwd~~t~~~~~~~~~~~~---V~~l~~s~------ 387 (415)
. | -.-|.|. +..|+++-. |.--|.|-+||+. |..++.+..+.. -+.++..|
T Consensus 184 ~--i-PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 184 A--L-PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred C--C-CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 0 0 0011111 112333221 1135789999975 778888865543 45666654
Q ss_pred CCCeEEEEEecCCCcEEEEECCCCc
Q 014934 388 NVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 388 ~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
.+..|+- -.-||+|..+|..+++
T Consensus 260 sg~lLVG--NFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 260 SGALLVG--NFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCeEEe--ecCCceeEEecCCCCc
Confidence 4667776 4559999999988765
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=90.87 E-value=16 Score=35.18 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=57.6
Q ss_pred CeEEEEEcCCCCeEEEEECCCcEEEEECCCCee---eEEe----cCCCccEEEEEeeC-----CEEEEEeCC--------
Q 014934 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR---VRTM----EGHRLRVGALAWSS-----SLLSSGSRD-------- 269 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~---~~~l----~~h~~~V~~l~~~~-----~~l~sgs~d-------- 269 (415)
..++|+|.|+|+.++ +...|.|.+++ ..+.. +..+ .........+++++ .+|......
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 468999999987665 57799999999 44432 3333 23456788999986 344444331
Q ss_pred -CcEEEEECCCC-------CccEEEecc---ccCCeEEEEEeCCCCEEEEEeCCC
Q 014934 270 -KSILQRDIRAQ-------EDFVSKLSG---HKSEVCGLKWSYDNRELASGGNDN 313 (415)
Q Consensus 270 -g~I~iwd~~~~-------~~~~~~~~~---h~~~V~~l~~spdg~~lasg~~dg 313 (415)
..|.-|..... +..+..+.. ....-..|.|.|||.+.++.+..+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 23444444333 111112222 233567799999998777765443
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=90.71 E-value=24 Score=37.01 Aligned_cols=230 Identities=12% Similarity=0.114 Sum_probs=123.1
Q ss_pred eeEeecCC-CcEEEEE-cCCeE--EEEECCCCCeEEeEecCCCCCeEEEEEcCC---CCeEEEEECCCc-EEEEECCCC-
Q 014934 170 LNLVDWSS-HNVLAVG-LGNCV--YLWNACSSKVTKLCDLGIDDSVCSVGWANR---NTHLAVGTSHGK-VQIWDASRC- 240 (415)
Q Consensus 170 i~~l~ws~-~~~la~~-~d~~V--~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~---g~~la~g~~dg~-V~iwd~~~~- 240 (415)
.....++| .+.+-+| ++..| |+.+ -|.+++..+.+.....|.|+..... .+..++|-.++. -++-.+..+
T Consensus 30 ~vs~~~s~~sn~IdiGIS~S~ISsYIi~-PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~ 108 (670)
T PF10395_consen 30 QVSDDFSPDSNQIDIGISGSAISSYIIK-PTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKV 108 (670)
T ss_pred eeecccCCCCceEEEEeccchhhheecC-CCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccC
Confidence 33445666 5667777 34444 4443 2556666666677788888887543 235666645443 343333222
Q ss_pred ----------e--eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc-cEEEec-cccC------CeEEEE
Q 014934 241 ----------K--RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED-FVSKLS-GHKS------EVCGLK 298 (415)
Q Consensus 241 ----------~--~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~-~h~~------~V~~l~ 298 (415)
+ ....++ -...|-++.+. +..+++...+|.|.+||.....- .+..+. .+.. -|....
T Consensus 109 ~~~~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~ 187 (670)
T PF10395_consen 109 GSTEDGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFE 187 (670)
T ss_pred ccccccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccc
Confidence 1 111122 35678888887 68899999999999999932220 000111 1111 122111
Q ss_pred EeCCCCEEEEEeC-C-C--cEEEEEC-CCCceeEEec---cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE
Q 014934 299 WSYDNRELASGGN-D-N--RLFVWNQ-HSTQPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370 (415)
Q Consensus 299 ~spdg~~lasg~~-d-g--~I~iwd~-~~~~~~~~~~---~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~ 370 (415)
......++++.+. + . ..+++.+ .....+..+. .+........|+-....|+.- .++.|.+|++..-+.
T Consensus 188 ~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l----~~~~i~~ysip~f~~ 263 (670)
T PF10395_consen 188 LENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL----SKKTISSYSIPNFQI 263 (670)
T ss_pred cccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE----eCCEEEEEEcCCceE
Confidence 1112334444333 2 2 4667777 2223333332 233334444444433334443 378999999998887
Q ss_pred EEEeeCC-------CCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 371 LSCMDTG-------SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 371 ~~~~~~~-------~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.+++.-. ..+.++.--...+.|++ .++.|++.|+.
T Consensus 264 ~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs----~~nkIyLld~~ 305 (670)
T PF10395_consen 264 QKTISLPSIIDKESDDLVSLKPPSPNRVLLS----VNNKIYLLDLK 305 (670)
T ss_pred EEEEEechhhccccccceEeecCCCCeEEEE----cCCEEEEEeeh
Confidence 7777532 24444443334455554 46799999874
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=90.49 E-value=1.5 Score=39.45 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=46.0
Q ss_pred EcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe---------------eCCCCEEEEEECCCCCeEEEEEecCCCcEEE
Q 014934 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM---------------DTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (415)
Q Consensus 341 ~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~---------------~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~v 405 (415)
+...++++++.. .+|.+++||+.+++.+..- .....|..+..+.+|.-+++. ++|..+.
T Consensus 18 l~~~~~~Ll~iT---~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l---sng~~y~ 91 (219)
T PF07569_consen 18 LECNGSYLLAIT---SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL---SNGDSYS 91 (219)
T ss_pred EEeCCCEEEEEe---CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE---eCCCEEE
Confidence 344567777766 5999999999998765432 133568889999999888773 4678888
Q ss_pred EECC
Q 014934 406 WRYP 409 (415)
Q Consensus 406 w~~~ 409 (415)
|+..
T Consensus 92 y~~~ 95 (219)
T PF07569_consen 92 YSPD 95 (219)
T ss_pred eccc
Confidence 8754
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.31 E-value=4.8 Score=40.30 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=85.8
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCC-------eEEEEECCCcEEEEECCC-CeeeEEecCCCccEEEEE
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT-------HLAVGTSHGKVQIWDASR-CKRVRTMEGHRLRVGALA 257 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~-------~la~g~~dg~V~iwd~~~-~~~~~~l~~h~~~V~~l~ 257 (415)
...+|-.|+.-|+++....++ +.| -|.|.|..+ .-++|-.+..|.-.|.+- +..+.... ....++.-.
T Consensus 489 ~~kLykmDIErGkvveeW~~~--ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~ 564 (776)
T COG5167 489 RDKLYKMDIERGKVVEEWDLK--DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNK 564 (776)
T ss_pred cccceeeecccceeeeEeecC--Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhcccccc
Confidence 357888899999998888743 334 566777532 334566676676667643 22222222 222333333
Q ss_pred ee------CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 258 WS------SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 258 ~~------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
|+ ..+++.|++.|-|++||--... ....+.+....|..+..+.+|+++++.+. +.|.+-|++
T Consensus 565 Fss~~tTesGyIa~as~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 565 FSSGMTTESGYIAAASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccccccccCceEEEecCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 33 5799999999999999954433 34556677889999999999998776554 467777764
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=20 Score=35.08 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=22.8
Q ss_pred eEEEEECCCCCeEEeEecCCCCC-eEEEEEcCCCCeEEEEECC
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDS-VCSVGWANRNTHLAVGTSH 229 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~-V~~v~~sp~g~~la~g~~d 229 (415)
.++.||..+.+...+........ -.+....-++++.+.|+.+
T Consensus 107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 48888988877665542111111 1122221477888888754
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=89.57 E-value=26 Score=35.58 Aligned_cols=177 Identities=12% Similarity=0.038 Sum_probs=87.8
Q ss_pred eEEEEECCCCCeEEeEecC-CC--CCeEEEEEcCCCCeEEEEECC-----CcEEEEECCCCeee--EEec---CCCccEE
Q 014934 188 CVYLWNACSSKVTKLCDLG-ID--DSVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCKRV--RTME---GHRLRVG 254 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~-~~--~~V~~v~~sp~g~~la~g~~d-----g~V~iwd~~~~~~~--~~l~---~h~~~V~ 254 (415)
.++.||..+.+.......+ .. .........-++.+.+.|+.+ ..+..||+.+.+-. ..+. .......
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 4888998887665432111 01 111111122356667777654 35888998775422 2221 0111122
Q ss_pred EEEeeCCEEEEEeCCC-----cEEEEECCCCCccEEEecc------ccCCeEEEEEeCCCCEEEEEeCC----CcEEEEE
Q 014934 255 ALAWSSSLLSSGSRDK-----SILQRDIRAQEDFVSKLSG------HKSEVCGLKWSYDNRELASGGND----NRLFVWN 319 (415)
Q Consensus 255 ~l~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~------h~~~V~~l~~spdg~~lasg~~d----g~I~iwd 319 (415)
.+...+.+++.|+.++ .+..||+.+.. ...+.. .... .+++. -++++++.|+.+ +.|.+||
T Consensus 274 ~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD 349 (470)
T PLN02193 274 MAADEENVYVFGGVSATARLKTLDSYNIVDKK--WFHCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYD 349 (470)
T ss_pred EEEECCEEEEECCCCCCCCcceEEEEECCCCE--EEeCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEE
Confidence 2334466777777553 46778877654 111111 1111 11222 267777777755 4689999
Q ss_pred CCCCceeEEecc----CC-CcEEEEEEcCCCCcEEEEEcCCC------------CCeEEEEECCCCcEE
Q 014934 320 QHSTQPVLKYCE----HT-AAVKAIAWSPHLHGLLASGGGTA------------DRCIRFWNTTTNTHL 371 (415)
Q Consensus 320 ~~~~~~~~~~~~----h~-~~V~~l~~sp~~~~llasggg~~------------d~~I~iwd~~t~~~~ 371 (415)
+.+.+-.. +.. .. ....+++. .+..+++.||... ...+.++|+.+.+-.
T Consensus 350 ~~t~~W~~-~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 350 PVQDKWTQ-VETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred CCCCEEEE-eccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 98765432 211 11 11112221 1345887776211 124788998877543
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=89.50 E-value=18 Score=34.80 Aligned_cols=134 Identities=11% Similarity=0.075 Sum_probs=68.6
Q ss_pred eEEEEECCCCCeEEeEecC----CCCCeEEEEEcCCCCeEEEEECC-----------CcEEEEECCCCeee--EEec---
Q 014934 188 CVYLWNACSSKVTKLCDLG----IDDSVCSVGWANRNTHLAVGTSH-----------GKVQIWDASRCKRV--RTME--- 247 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~----~~~~V~~v~~sp~g~~la~g~~d-----------g~V~iwd~~~~~~~--~~l~--- 247 (415)
.+++||..+.+...+-.+. ........+..-+++..+.|+.+ ..|.+||..+.+=. ....
T Consensus 102 ~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~ 181 (341)
T PLN02153 102 DFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF 181 (341)
T ss_pred cEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC
Confidence 6889999887765543221 11111222223356777777653 24778898765322 1111
Q ss_pred CCCccEEEEEeeCCEEEEEeCC-------------CcEEEEECCCCCccEEEecc----c-cCCeEEEEEeCCCCEEEEE
Q 014934 248 GHRLRVGALAWSSSLLSSGSRD-------------KSILQRDIRAQEDFVSKLSG----H-KSEVCGLKWSYDNRELASG 309 (415)
Q Consensus 248 ~h~~~V~~l~~~~~~l~sgs~d-------------g~I~iwd~~~~~~~~~~~~~----h-~~~V~~l~~spdg~~lasg 309 (415)
..........+.+++++.|+.+ ..+.+||+.+.. -..+.. . .....++. .-++++++.|
T Consensus 182 ~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~--W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~G 258 (341)
T PLN02153 182 EKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK--WTEVETTGAKPSARSVFAHA-VVGKYIIIFG 258 (341)
T ss_pred CCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc--EEeccccCCCCCCcceeeeE-EECCEEEEEC
Confidence 1111223344556666665532 458889987765 222211 1 01112222 2356777787
Q ss_pred eCC--------------CcEEEEECCCCc
Q 014934 310 GND--------------NRLFVWNQHSTQ 324 (415)
Q Consensus 310 ~~d--------------g~I~iwd~~~~~ 324 (415)
+.. +.|..+|+.+.+
T Consensus 259 G~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 259 GEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred cccCCccccccccccccccEEEEEcCccE
Confidence 752 257788876653
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.48 E-value=16 Score=33.08 Aligned_cols=210 Identities=14% Similarity=0.122 Sum_probs=107.7
Q ss_pred CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCC--CeEEEEECCC-cEEEEECC--CCeeeEEecCC--
Q 014934 178 HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN--THLAVGTSHG-KVQIWDAS--RCKRVRTMEGH-- 249 (415)
Q Consensus 178 ~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g--~~la~g~~dg-~V~iwd~~--~~~~~~~l~~h-- 249 (415)
+.++-+- ..+.|.-||..+.++.+...-+ ..+.++.+--.| +..+++.... .|.-||.. ..+..+++..-
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 4566666 3577888998887765544312 224444443322 2344443332 34457632 23333442211
Q ss_pred ---CccEEEEEee--CCEEEEEeC----------CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEE-EeCCC
Q 014934 250 ---RLRVGALAWS--SSLLSSGSR----------DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELAS-GGNDN 313 (415)
Q Consensus 250 ---~~~V~~l~~~--~~~l~sgs~----------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-g~~dg 313 (415)
..+.+.-..+ +++ ..|.. .|.++.|-.... +..+...-.--++|+|+.+.+.+.. -+.+-
T Consensus 105 d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~ 180 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNY 180 (310)
T ss_pred hHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCce
Confidence 1222222222 334 33332 133444433221 1222222223467899987776654 45566
Q ss_pred cEEEEE--CCCC-----ceeEEeccC---C-CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-CCCEE
Q 014934 314 RLFVWN--QHST-----QPVLKYCEH---T-AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVC 381 (415)
Q Consensus 314 ~I~iwd--~~~~-----~~~~~~~~h---~-~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~-~~~V~ 381 (415)
.|.-|| ..++ +.+..++.. . -..-.++....|...+++- ..++|...|..+|+.+.++.- ..+|+
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~---ng~~V~~~dp~tGK~L~eiklPt~qit 257 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF---NGGTVQKVDPTTGKILLEIKLPTPQIT 257 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe---cCcEEEEECCCCCcEEEEEEcCCCceE
Confidence 776677 4444 333333321 0 1112344455666444444 478999999999999999984 56799
Q ss_pred EEEECC-CCCeEEEEE
Q 014934 382 NLVWSK-NVNELVSTH 396 (415)
Q Consensus 382 ~l~~s~-~~~~l~s~~ 396 (415)
+++|-- +-..|++++
T Consensus 258 sccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 258 SCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEecCCCccEEEEEe
Confidence 999964 345555543
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.19 E-value=0.45 Score=50.27 Aligned_cols=111 Identities=15% Similarity=0.131 Sum_probs=63.9
Q ss_pred ceeEeecCC---C-cEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEE-----------EEcCCCCeEEEEECCCcE
Q 014934 169 YLNLVDWSS---H-NVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSV-----------GWANRNTHLAVGTSHGKV 232 (415)
Q Consensus 169 ~i~~l~ws~---~-~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v-----------~~sp~g~~la~g~~dg~V 232 (415)
++..|.|.| + -.+.++. ++.|++.++..... .++. +|...++.+ ..+|||+.+|.++.||.|
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r-sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR-SHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHH-hcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 446677776 2 3444453 46777766655332 2222 354444433 368999999999999999
Q ss_pred EEEECC-----CCeeeEEecCCC-ccEEEEEeeC-----------CEEEEE-eCCCcEEEEECCCCC
Q 014934 233 QIWDAS-----RCKRVRTMEGHR-LRVGALAWSS-----------SLLSSG-SRDKSILQRDIRAQE 281 (415)
Q Consensus 233 ~iwd~~-----~~~~~~~l~~h~-~~V~~l~~~~-----------~~l~sg-s~dg~I~iwd~~~~~ 281 (415)
+.|.+. ..+++...+.|. .+-.|.-++. .+++++ ..++.+++|....-.
T Consensus 260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~ 326 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ 326 (1283)
T ss_pred ceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchh
Confidence 998763 223445555665 3333333431 133333 445668888765443
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=89.15 E-value=16 Score=32.61 Aligned_cols=103 Identities=11% Similarity=0.160 Sum_probs=61.4
Q ss_pred CEEEEEeCCCcEEEEECC--CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCC---eEEEE-ECCC----CcEE--
Q 014934 304 RELASGGNDNRLFVWNQH--STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR---CIRFW-NTTT----NTHL-- 371 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~---~I~iw-d~~t----~~~~-- 371 (415)
+.|..+...+.|.+|++. ..+++.+|. --+.|..++++..|.++++.=...... .+|+| |.+. .+++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344343556779999988 345677774 448899999999999776654321223 56665 2211 1111
Q ss_pred -------------------E--EeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 372 -------------------S--CMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 372 -------------------~--~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
. ++.-..++.+++..|-...|+. | .++.+.+|.+..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV--g-~~~~l~lf~l~~ 164 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV--G-CGNKLVLFTLKY 164 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE--E-cCCEEEEEEEEE
Confidence 1 1112345667777775444555 3 467899998753
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.99 Score=48.99 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=73.1
Q ss_pred CeEEEEEeCCCCEEEEEe--CCCcEEEEECCCCc--------eeEE---eccCCCcEEEEEEcCCCCcEEEEEcCCCCCe
Q 014934 293 EVCGLKWSYDNRELASGG--NDNRLFVWNQHSTQ--------PVLK---YCEHTAAVKAIAWSPHLHGLLASGGGTADRC 359 (415)
Q Consensus 293 ~V~~l~~spdg~~lasg~--~dg~I~iwd~~~~~--------~~~~---~~~h~~~V~~l~~sp~~~~llasggg~~d~~ 359 (415)
.|..+...+|+...++.. ++-.|..||+++-. ++.. ......-+.++.|.|.-....+.+. .|+.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l--~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL--SDLS 179 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc--cccc
Confidence 455556667766655533 44478999987532 1111 0112234567889887554444444 6999
Q ss_pred EEEEECCCCc-EEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 360 IRFWNTTTNT-HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 360 I~iwd~~t~~-~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
|++..+.... .+..+.....+++++|+|.|+.++. |...|++.-|..
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~i--G~nnGt~vQy~P 227 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFI--GRNNGTEVQYEP 227 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeE--ecCCCeEEEeec
Confidence 9998775432 3334456677899999999999999 888999888764
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=88.91 E-value=2.6 Score=36.34 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=25.5
Q ss_pred CCeEEEEEeCCC------CEEEEEeCCCcEEEEECCC
Q 014934 292 SEVCGLKWSYDN------RELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 292 ~~V~~l~~spdg------~~lasg~~dg~I~iwd~~~ 322 (415)
..|.+++|||.| -+||+...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999944 3688999999999998654
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.84 E-value=13 Score=41.48 Aligned_cols=105 Identities=10% Similarity=0.117 Sum_probs=51.0
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
....+++++ ..++|++ ..|.|+++....-+..........-.++-+.|-.......+...+..+.+|.......+.
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~-- 114 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF-- 114 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee--
Confidence 345677888 7899998 578999997544332222211111122222222222223333444455555543221111
Q ss_pred cCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCC
Q 014934 247 EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRA 279 (415)
Q Consensus 247 ~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~ 279 (415)
+...+++..-.+ .. +-| ..+.+++||+.-
T Consensus 115 --~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~ 145 (993)
T KOG1983|consen 115 --LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLR 145 (993)
T ss_pred --cCCcceeccCCCCcch-hcc-cCceeeEeeech
Confidence 222333333332 34 455 888888888754
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.77 E-value=39 Score=37.67 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=100.7
Q ss_pred cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC-------C--CCeEEEEEC---------CCcEEEEECCC-----Ce
Q 014934 185 LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-------R--NTHLAVGTS---------HGKVQIWDASR-----CK 241 (415)
Q Consensus 185 ~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-------~--g~~la~g~~---------dg~V~iwd~~~-----~~ 241 (415)
....|.+.+..+.+++..+++...+.|++++..- . ..+||+|+. .|.+.|+|+-. ++
T Consensus 1002 ~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1002 EQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred ccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence 3445777777777776667776667777776532 1 248999864 48899999722 21
Q ss_pred -----eeEEe--cCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 242 -----RVRTM--EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 242 -----~~~~l--~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
.++.+ +...+.|..++=-..+|++|. ...|.+|++......+-.-. -.-++.-....--+++|+.|.--..
T Consensus 1082 P~t~~KlKel~~eE~KGtVsavceV~G~l~~~~-GqKI~v~~l~r~~~ligVaF-iD~~~yv~s~~~vknlIl~gDV~ks 1159 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQ-GQKIIVRKLDRDSELIGVAF-IDLPLYVHSMKVVKNLILAGDVMKS 1159 (1366)
T ss_pred CcccceeeeeehhhcccceEEEEEeccEEEEcc-CcEEEEEEeccCCcceeeEE-eccceeEEehhhhhhheehhhhhhc
Confidence 12221 245678888776656666653 34699999954432221111 1122333333334566776665555
Q ss_pred EEEEECCCC-ceeEEec--cCCCcEEEEEEcCCCCcEE-EEEcCCCCCeEEEEEC
Q 014934 315 LFVWNQHST-QPVLKYC--EHTAAVKAIAWSPHLHGLL-ASGGGTADRCIRFWNT 365 (415)
Q Consensus 315 I~iwd~~~~-~~~~~~~--~h~~~V~~l~~sp~~~~ll-asggg~~d~~I~iwd~ 365 (415)
|.+.-.... ..+.-+. ...-.+.++.|--+|..|- +++. .|+.|+++-.
T Consensus 1160 isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD--a~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1160 ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD--ADRNIHVYMY 1212 (1366)
T ss_pred eEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc--CCCcEEEEEe
Confidence 555444322 1122221 1223477888887777653 3333 7899988744
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=88.49 E-value=16 Score=34.84 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=45.1
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC----cEEEEECCCCee--eEEec-CC-Cc---cEEE
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG----KVQIWDASRCKR--VRTME-GH-RL---RVGA 255 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg----~V~iwd~~~~~~--~~~l~-~h-~~---~V~~ 255 (415)
..++.||..+.+...+-.+.............++++.+.|+.++ .+.+||..+.+- +..+. .. .. ....
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~ 218 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAAS 218 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeE
Confidence 46899999988876654332212222233344677888887654 356889876542 22211 01 10 1222
Q ss_pred EEee-CCEEEEEeCC
Q 014934 256 LAWS-SSLLSSGSRD 269 (415)
Q Consensus 256 l~~~-~~~l~sgs~d 269 (415)
+... +.+++.|+.+
T Consensus 219 ~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 219 IKINESLLLCIGGFN 233 (323)
T ss_pred EEECCCEEEEECCcC
Confidence 3333 5677888766
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=88.30 E-value=28 Score=34.43 Aligned_cols=107 Identities=7% Similarity=0.105 Sum_probs=68.7
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-----eeEEecc--CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEE
Q 014934 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-----PVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (415)
Q Consensus 290 h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~-----~~~~~~~--h~~~V~~l~~sp~~~~llasggg~~d~~I~i 362 (415)
....+.++.|.+++.+++++ .+|.+. |....++ ....... -...+.++.|.+++. ++++| ..|.+..
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G---~~G~v~~ 352 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAG---GSGILLR 352 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEE---CCCcEEE
Confidence 34568899999999887766 556544 3444443 2222211 123588999998876 77777 4776665
Q ss_pred EECCCCcEEEEee----CCCCEEEEEECCCCCeEEEEEecCCCcEEEE
Q 014934 363 WNTTTNTHLSCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (415)
Q Consensus 363 wd~~t~~~~~~~~----~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw 406 (415)
. ...|+...... .....+.+.|..+++-+++ | .+|.|.-|
T Consensus 353 s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~--G-~~G~il~~ 396 (398)
T PLN00033 353 S-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL--G-NDGVLLRY 396 (398)
T ss_pred e-CCCCcceeEccccCCCCcceeEEEEcCCCceEEE--e-CCcEEEEe
Confidence 5 45565544443 2346889999888888877 5 67877655
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=87.48 E-value=7.3 Score=29.58 Aligned_cols=41 Identities=7% Similarity=-0.002 Sum_probs=32.0
Q ss_pred CCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEE
Q 014934 356 ADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 356 ~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 396 (415)
.+|.+.-||..+++....++.-...++++.++|+..++.+-
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 67899999999998766666667889999999999888853
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.33 E-value=11 Score=37.31 Aligned_cols=137 Identities=10% Similarity=0.133 Sum_probs=85.5
Q ss_pred EEEEcCCCCeEEEEECCCcEEEEECCCC--eeeEEe-cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc---cE
Q 014934 213 SVGWANRNTHLAVGTSHGKVQIWDASRC--KRVRTM-EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED---FV 284 (415)
Q Consensus 213 ~v~~sp~g~~la~g~~dg~V~iwd~~~~--~~~~~l-~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~---~~ 284 (415)
.+-|. |.+..+.+...|.+.=|-+.-. .....+ ....++|.++.|+ ...|++--.|.+|.+++....+. ..
T Consensus 27 gvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 34343 3333444455556666665422 112222 2345689999999 46888888999999998844332 12
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEE
Q 014934 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 285 ~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasg 352 (415)
.+.+.....|.+..|+.+ .-+|.-.+.| +-+|-.... +.+...+.|...|+--.|+++..-+|.+.
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 233334456999999965 6677766666 666665432 34455567888999999999887544443
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.90 E-value=6.1 Score=39.02 Aligned_cols=157 Identities=18% Similarity=0.086 Sum_probs=95.7
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee-eEEe-cCCCc----cEE-EEE-ee-CCEEEEEeCCCcEEEE-EC
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR-VRTM-EGHRL----RVG-ALA-WS-SSLLSSGSRDKSILQR-DI 277 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~-~~~l-~~h~~----~V~-~l~-~~-~~~l~sgs~dg~I~iw-d~ 277 (415)
...|..+-..|||+.|.+-+. ..+.++++.+... .+.+ ....+ .|+ .+. .. +.-|++++.||.|..| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 466788889999998877655 5788998865321 1111 11111 122 111 12 4578889999999888 66
Q ss_pred CCCCcc----EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEc
Q 014934 278 RAQEDF----VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 278 ~~~~~~----~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 353 (415)
+..... ++.+.-...++.-+.-..+.+-+++-...|.+.++.....+.+.. +.--..+.-+++||++.+++.-
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~Ll~e-- 375 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAYLLSE-- 375 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccchheee--
Confidence 654421 111221223444443333455678888888888887655554432 2333466778999999977763
Q ss_pred CCCCCeEEEEECCCCcE
Q 014934 354 GTADRCIRFWNTTTNTH 370 (415)
Q Consensus 354 g~~d~~I~iwd~~t~~~ 370 (415)
..|.|+++.+.+..+
T Consensus 376 --~~gki~~~~l~Nr~P 390 (733)
T COG4590 376 --DQGKIRLAQLENRNP 390 (733)
T ss_pred --cCCceEEEEecCCCC
Confidence 357899998876543
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=85.97 E-value=38 Score=33.71 Aligned_cols=61 Identities=10% Similarity=0.193 Sum_probs=39.2
Q ss_pred CcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 346 HGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 346 ~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+.++..-+ .||.+.||+-+.-.....+..---.--+.|.+....+++ ..+...|.-|+|..
T Consensus 145 ~~~IcVQS--~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt--~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 145 RDFICVQS--MDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVT--ASSSWTLECYKYQD 205 (418)
T ss_pred ceEEEEEe--cCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEE--ecCceeEEEecHHH
Confidence 34555554 899999999775543333332222233778888888887 45667888888754
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=85.84 E-value=13 Score=34.80 Aligned_cols=115 Identities=14% Similarity=0.246 Sum_probs=66.4
Q ss_pred CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe------CCCcEEEEECCCCceeEEecc-----CCCcEE
Q 014934 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG------NDNRLFVWNQHSTQPVLKYCE-----HTAAVK 337 (415)
Q Consensus 269 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~------~dg~I~iwd~~~~~~~~~~~~-----h~~~V~ 337 (415)
-..|++||....+ ....-.+-.+.|.+|.|..+.++++.|. ....+..||+.+.... .+.. -.++|.
T Consensus 15 C~~lC~yd~~~~q-W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQ-WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCE-eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEE
Confidence 3459999987765 2233334567899999996666777664 3556889998876432 2322 236788
Q ss_pred EEEEcCC-CCcEEEEEcC-CCCCeEEEEECCCCcEEEE--eeCCCCEEEEEE
Q 014934 338 AIAWSPH-LHGLLASGGG-TADRCIRFWNTTTNTHLSC--MDTGSQVCNLVW 385 (415)
Q Consensus 338 ~l~~sp~-~~~llasggg-~~d~~I~iwd~~t~~~~~~--~~~~~~V~~l~~ 385 (415)
++.+... +..+.+.|.. ..+..|..||-.+-..+.. +..+..|..+.+
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 8877433 3345554431 1244577776554333332 122344555443
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=85.77 E-value=15 Score=34.39 Aligned_cols=89 Identities=19% Similarity=0.308 Sum_probs=59.3
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE------CCCcEEEEECCCCeeeEEecC-----CCccEEE
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT------SHGKVQIWDASRCKRVRTMEG-----HRLRVGA 255 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~------~dg~V~iwd~~~~~~~~~l~~-----h~~~V~~ 255 (415)
..|++||..+.+....-. +-.+.|+++.|..+.+.++.|. ....+..||..+.. ...+.+ -.++|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~-~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN-GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCC-CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 469999999888776654 4578999999997777777774 34568889987754 333433 2477888
Q ss_pred EEee---C-CEEEEEe-CCC--cEEEEEC
Q 014934 256 LAWS---S-SLLSSGS-RDK--SILQRDI 277 (415)
Q Consensus 256 l~~~---~-~~l~sgs-~dg--~I~iwd~ 277 (415)
+.+. . ++.+.|. .++ .|..||=
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcC
Confidence 8774 3 3444443 333 3556653
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=85.76 E-value=33 Score=32.54 Aligned_cols=219 Identities=14% Similarity=0.032 Sum_probs=113.0
Q ss_pred cEEEEEcCCeEEEEECCC--CCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCee-------------
Q 014934 179 NVLAVGLGNCVYLWNACS--SKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKR------------- 242 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~--~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~------------- 242 (415)
+.|..|.+..+++.+... ++..++. +...|+++...+.-+.|++-+ ....++.+++..-..
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~~~~kl~---~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPGTLEKLI---GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCceEEEEcccCCCCeEEec---CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 579999999999998765 3444444 467899999998777655543 334499999832211
Q ss_pred ---eEEecCCCccEEEEEee-C--CEEEEEeCCCcEEEEECCCCCccEEEec-------cccCCeEEEEEeCC--CCEEE
Q 014934 243 ---VRTMEGHRLRVGALAWS-S--SLLSSGSRDKSILQRDIRAQEDFVSKLS-------GHKSEVCGLKWSYD--NRELA 307 (415)
Q Consensus 243 ---~~~l~~h~~~V~~l~~~-~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------~h~~~V~~l~~spd--g~~la 307 (415)
...+ +|.......... + ..++++....+|.++......+....+. --..++..+..+++ ...+.
T Consensus 91 ~~~~~~~-~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 91 KNVLTKI-PDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred ccceEeC-CcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 1111 233323323332 2 2445555666777765433211111111 01123333333333 45677
Q ss_pred EEeCCCcEEEEECCC--Cce----eEE-eccCC-CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE--EEEeeCC
Q 014934 308 SGGNDNRLFVWNQHS--TQP----VLK-YCEHT-AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH--LSCMDTG 377 (415)
Q Consensus 308 sg~~dg~I~iwd~~~--~~~----~~~-~~~h~-~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~--~~~~~~~ 377 (415)
.|+..+...++++.. ... +.. ..... .++.... -+++. +|.+ .|....+-|...... ...+.-.
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e-~Llc----~~~~~v~Vn~~G~~~~r~~~l~w~ 243 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDE-FLLC----YDEFGVFVNLYGKRRSRNPILHWE 243 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCe-EEEE----ECcEEEEEeCCCCccccceEEEcC
Confidence 776643344555432 110 000 00111 2333333 33444 4443 466777777763121 2234445
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
....++++.. .+|++. .++.|.|+++.+++
T Consensus 244 ~~p~~~~~~~--pyll~~---~~~~ievr~l~~~~ 273 (302)
T smart00036 244 FMPESFAYHS--PYLLAF---HDNGIEIRSIKTGE 273 (302)
T ss_pred CcccEEEEEC--CEEEEE---cCCcEEEEECCCCc
Confidence 5566777763 566653 46679999998764
|
Unpublished observations. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.57 E-value=15 Score=40.99 Aligned_cols=139 Identities=14% Similarity=0.179 Sum_probs=80.1
Q ss_pred EEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEc--------CCCCeEEEEECCCcEEEEECCC----Cee---e--EE
Q 014934 183 VGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWA--------NRNTHLAVGTSHGKVQIWDASR----CKR---V--RT 245 (415)
Q Consensus 183 ~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~s--------p~g~~la~g~~dg~V~iwd~~~----~~~---~--~~ 245 (415)
...|+.+++|+.+++.....+. +-...|..|..- |.=+++++-..--.|.|+-+.- +.. . -.
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d-~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYD-GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCcccccc-chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence 3458999999999865555554 334456666542 2223444433344566654421 110 0 11
Q ss_pred ecCCCccEEEEEee-CCEEEEEeCCCcEEEE--ECCCCC-------------------ccEEEec-cccCCeEEEEEeCC
Q 014934 246 MEGHRLRVGALAWS-SSLLSSGSRDKSILQR--DIRAQE-------------------DFVSKLS-GHKSEVCGLKWSYD 302 (415)
Q Consensus 246 l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iw--d~~~~~-------------------~~~~~~~-~h~~~V~~l~~spd 302 (415)
+......|.|+... ...++-+|+||.|+-. ....+- ..+-.+. .+..+|..+.....
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 12234568888854 3444455566654422 111110 0011122 56779999999988
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 014934 303 NRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 303 g~~lasg~~dg~I~iwd~~~ 322 (415)
-+.|.+-+..++|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88999999999999999975
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=85.53 E-value=19 Score=29.59 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=58.1
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCC--------ceeEEeccCCCcEEEEEEcCC----CCcEEEEEcCCCCCeEEEEE
Q 014934 297 LKWSYDNRELASGGNDNRLFVWNQHST--------QPVLKYCEHTAAVKAIAWSPH----LHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 297 l~~spdg~~lasg~~dg~I~iwd~~~~--------~~~~~~~~h~~~V~~l~~sp~----~~~llasggg~~d~~I~iwd 364 (415)
-+|......|++++.-|+|.|++.... ..+..+ .-...|++|+--+- +.-+|+.|+ ...|..||
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt---~t~llaYD 79 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT---QTSLLAYD 79 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec---cceEEEEE
Confidence 456666667889999999999987533 233333 34567777755442 344677774 78999999
Q ss_pred CCCCcEEEEeeCCCCEEEEEEC
Q 014934 365 TTTNTHLSCMDTGSQVCNLVWS 386 (415)
Q Consensus 365 ~~t~~~~~~~~~~~~V~~l~~s 386 (415)
+.....+...+....|.++.+-
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g 101 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIG 101 (136)
T ss_pred cccCchhhhhhCccceeEEEEE
Confidence 9887766655556667776663
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=84.40 E-value=38 Score=34.37 Aligned_cols=133 Identities=12% Similarity=0.113 Sum_probs=71.3
Q ss_pred CeEEEEECCCCCeEEeEecC---CCCCeEEEEEcCCCCeEEEEECCC-----cEEEEECCCCeeeEEec------CCCcc
Q 014934 187 NCVYLWNACSSKVTKLCDLG---IDDSVCSVGWANRNTHLAVGTSHG-----KVQIWDASRCKRVRTME------GHRLR 252 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~---~~~~V~~v~~sp~g~~la~g~~dg-----~V~iwd~~~~~~~~~l~------~h~~~ 252 (415)
+.++.||..+.+...+.... ....-.++ ..-++++.+.|+.++ .+..||+.+.+-. .+. .....
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~-~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~R~~ 321 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSM-AADEENVYVFGGVSATARLKTLDSYNIVDKKWF-HCSTPGDSFSIRGG 321 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCCccceEE-EEECCEEEEECCCCCCCCcceEEEEECCCCEEE-eCCCCCCCCCCCCC
Confidence 46889999888776554321 11111122 223566777776543 4678888765422 111 11112
Q ss_pred EEEEEeeCCEEEEEeCC----CcEEEEECCCCCccEEEeccc-----cCCeEEEEEeCCCCEEEEEeCC-----------
Q 014934 253 VGALAWSSSLLSSGSRD----KSILQRDIRAQEDFVSKLSGH-----KSEVCGLKWSYDNRELASGGND----------- 312 (415)
Q Consensus 253 V~~l~~~~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~h-----~~~V~~l~~spdg~~lasg~~d----------- 312 (415)
...+...+.+++.|+.+ ..+.+||+.+.. ...+... .....+++ .-++++++.|+.+
T Consensus 322 ~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~--W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~ 398 (470)
T PLN02193 322 AGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK--WTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPG 398 (470)
T ss_pred cEEEEECCcEEEEECCCCCccCceEEEECCCCE--EEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCcc
Confidence 23334457777777765 458899998765 2222211 11112222 2356777787753
Q ss_pred ---CcEEEEECCCCc
Q 014934 313 ---NRLFVWNQHSTQ 324 (415)
Q Consensus 313 ---g~I~iwd~~~~~ 324 (415)
+.+.+||+.+.+
T Consensus 399 ~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 399 QLTDGTFALDTETLQ 413 (470)
T ss_pred ceeccEEEEEcCcCE
Confidence 247888887654
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=83.37 E-value=6 Score=24.60 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=23.3
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCceeEEecc
Q 014934 301 YDNRELASGG-NDNRLFVWNQHSTQPVLKYCE 331 (415)
Q Consensus 301 pdg~~lasg~-~dg~I~iwd~~~~~~~~~~~~ 331 (415)
|+++.|.++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677665544 578999999998888777654
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=83.36 E-value=36 Score=31.17 Aligned_cols=140 Identities=12% Similarity=0.136 Sum_probs=74.8
Q ss_pred EEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC-CC--cEEEEECCC----CeeeE---EecCCCccEEEEEe
Q 014934 189 VYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HG--KVQIWDASR----CKRVR---TMEGHRLRVGALAW 258 (415)
Q Consensus 189 V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~-dg--~V~iwd~~~----~~~~~---~l~~h~~~V~~l~~ 258 (415)
-.+||..+++...+. ....-.+.+=.+-+||++|.+|+. +| .+++++... ..-.. .+....-.-+....
T Consensus 48 s~~yD~~tn~~rpl~-v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLT-VQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEecc-CCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 457899888875544 233344445567889999999875 32 478887644 11110 11111111111111
Q ss_pred -eCCEEEEEeCCCc-EEEEECCCC-CccEE--Eecc-----ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 014934 259 -SSSLLSSGSRDKS-ILQRDIRAQ-EDFVS--KLSG-----HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 259 -~~~~l~sgs~dg~-I~iwd~~~~-~~~~~--~~~~-----h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~ 328 (415)
+++.|+.|+.... ..+|.-+.. ..... .+.. ...----+...|+|++|+.+..+. .|||..+.+.+..
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEee
Confidence 3678888877653 344443221 11111 1110 001111345579999999988754 5678888776666
Q ss_pred ecc
Q 014934 329 YCE 331 (415)
Q Consensus 329 ~~~ 331 (415)
+..
T Consensus 205 lP~ 207 (243)
T PF07250_consen 205 LPD 207 (243)
T ss_pred CCC
Confidence 643
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=83.08 E-value=45 Score=32.02 Aligned_cols=83 Identities=13% Similarity=0.055 Sum_probs=39.8
Q ss_pred CeEEEEECC--CCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC-----------CcEEEEECCCCeeeEE---ecCCC
Q 014934 187 NCVYLWNAC--SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-----------GKVQIWDASRCKRVRT---MEGHR 250 (415)
Q Consensus 187 ~~V~iwd~~--~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d-----------g~V~iwd~~~~~~~~~---l~~h~ 250 (415)
..++.+|+. +.+...+..+............-++++.++|+.+ ..+..||..+.+-... .....
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~ 108 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGL 108 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcc
Confidence 567788863 3344444332211111111223367777888753 2477888876542221 11111
Q ss_pred ccEEEE-EeeCCEEEEEeCC
Q 014934 251 LRVGAL-AWSSSLLSSGSRD 269 (415)
Q Consensus 251 ~~V~~l-~~~~~~l~sgs~d 269 (415)
.....+ ...+.+.+.|+.+
T Consensus 109 ~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 109 LGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred cceeEEEEeCCEEEEEcCcC
Confidence 112223 3456777777764
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=82.96 E-value=52 Score=32.60 Aligned_cols=145 Identities=10% Similarity=0.102 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCeEEEEECCCcEEEEECCCC--eeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCc---cE
Q 014934 211 VCSVGWANRNTHLAVGTSHGKVQIWDASRC--KRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQED---FV 284 (415)
Q Consensus 211 V~~v~~sp~g~~la~g~~dg~V~iwd~~~~--~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~---~~ 284 (415)
...+..+++|.++++|..-..++-||-... +.+ . ......+..+.|. ...++..+.+|.+..-+-..... ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~-~-~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPH-N-RASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEe-c-CCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccce
Confidence 445567788888777654433344543221 111 1 2234568888887 34455555777765533222110 11
Q ss_pred EEecc--ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec---cCCCcEEEEEEcCCCCcEEEEEcCCCCCe
Q 014934 285 SKLSG--HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRC 359 (415)
Q Consensus 285 ~~~~~--h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~llasggg~~d~~ 359 (415)
..... -...+.++.|.+++..+++| ..|.+.... ..++.-.... .-....+.+.|.++++ .+++| .+|.
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G---~~G~ 392 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVLG---NDGV 392 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEEEe---CCcE
Confidence 22211 12358889999877765554 667666543 3444322222 2345678999987765 66666 5787
Q ss_pred EEEE
Q 014934 360 IRFW 363 (415)
Q Consensus 360 I~iw 363 (415)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7654
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.87 E-value=57 Score=33.47 Aligned_cols=234 Identities=15% Similarity=0.066 Sum_probs=123.3
Q ss_pred CCCcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 165 QDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 165 ~~~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
.-|..+..+-+.-++.+-+|.+..++.||..+++..++-.......|..+.-+-.| .|.+|+.+| |.+.+.+..+...
T Consensus 162 l~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 162 LKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred ccCccceeeeeeccCcEEEecCCcceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 34556777777777788888888999999999998887754444566666655555 477888887 7777766532221
Q ss_pred Eec-CCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccc--cCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 245 TME-GHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGH--KSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 245 ~l~-~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
... -..+.|..+.-+ ...+..|+..|..+.--.+.+-. ....+.| -..|.++....+|. |-+++.++.+++-+.
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq-~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a 317 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQ-IPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTA 317 (671)
T ss_pred cCCCCcchheeeeecccCCCEEEeecccceeEecCCCCcc-ccccccCCccccccceeeccCCC-EeeeccCceEEEecc
Confidence 111 123455555554 46778888877554433332221 1111111 23466676666665 456666666655332
Q ss_pred CCCceeEEeccCCCcE-EEEEEcC--CCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--CCCCEEEEEECCCCCeEEEE
Q 014934 321 HSTQPVLKYCEHTAAV-KAIAWSP--HLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V-~~l~~sp--~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~ 395 (415)
. ......+....+.+ ..++-.| ....+.... .-+.+.+-+-.+|..+..+. -+..|+.+.+..++..-+.
T Consensus 318 ~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n---s~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlg- 392 (671)
T COG3292 318 D-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN---SIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLG- 392 (671)
T ss_pred h-hhheeeeecCCCchhhhhccCchhcccceeecc---ccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEE-
Confidence 2 11111122211111 1112222 111111111 23345555556666665543 2455666677766655443
Q ss_pred EecCCCcEEEEECC
Q 014934 396 HGYSQNQIIVWRYP 409 (415)
Q Consensus 396 ~g~~dg~I~vw~~~ 409 (415)
+.++-+..|+-.
T Consensus 393 --s~q~GLsrl~n~ 404 (671)
T COG3292 393 --SMQNGLSRLDNK 404 (671)
T ss_pred --ecccchhhhccC
Confidence 334344444433
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=82.71 E-value=54 Score=32.61 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=25.7
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 292 SEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 292 ~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
..|..++..+..+.|++...+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34999999998899999999999999999753
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=82.29 E-value=52 Score=32.16 Aligned_cols=83 Identities=12% Similarity=0.018 Sum_probs=39.5
Q ss_pred CeEEEEECCC--CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC-----------CcEEEEECCCCeeeE--EecCCC-
Q 014934 187 NCVYLWNACS--SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-----------GKVQIWDASRCKRVR--TMEGHR- 250 (415)
Q Consensus 187 ~~V~iwd~~~--~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d-----------g~V~iwd~~~~~~~~--~l~~h~- 250 (415)
..++++|... ++...+..+............-++.+.+.|+.. ..+..||..+.+-.. ......
T Consensus 50 ~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~ 129 (376)
T PRK14131 50 TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGL 129 (376)
T ss_pred CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcc
Confidence 5678888764 344433332211111111223357777777653 247788887654222 111111
Q ss_pred ccEEEEE-eeCCEEEEEeCC
Q 014934 251 LRVGALA-WSSSLLSSGSRD 269 (415)
Q Consensus 251 ~~V~~l~-~~~~~l~sgs~d 269 (415)
....+++ .++.+.+.|+.+
T Consensus 130 ~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 130 AGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred cceEEEEeeCCEEEEECCCC
Confidence 1122233 346777777754
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=82.25 E-value=14 Score=38.19 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=29.0
Q ss_pred CCeEEEEEcC----CCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 209 DSVCSVGWAN----RNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 209 ~~V~~v~~sp----~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
..+.+++++. +..+|++-+.|+.+++||+.+++++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3456677766 6789999999999999999999986655
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=81.63 E-value=6.7 Score=24.17 Aligned_cols=34 Identities=12% Similarity=0.245 Sum_probs=23.1
Q ss_pred EeccCCCcEEEEEEcCCCCcEEEEEcCCCC--CeEEEE
Q 014934 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTAD--RCIRFW 363 (415)
Q Consensus 328 ~~~~h~~~V~~l~~sp~~~~llasggg~~d--~~I~iw 363 (415)
++....+.-...+|+|+|+.++.++. .+ |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~--~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSN--RNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEE--CT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEec--CCCCCCcCEE
Confidence 34445567788999999998888876 55 655555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=80.92 E-value=89 Score=33.94 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=95.2
Q ss_pred CCCCCeEEEEEc---C----CCCeEEEEECCCcEEEEECCCC---------------eeeEEecC---CCccEEEEEeeC
Q 014934 206 GIDDSVCSVGWA---N----RNTHLAVGTSHGKVQIWDASRC---------------KRVRTMEG---HRLRVGALAWSS 260 (415)
Q Consensus 206 ~~~~~V~~v~~s---p----~g~~la~g~~dg~V~iwd~~~~---------------~~~~~l~~---h~~~V~~l~~~~ 260 (415)
....+|..|+|. . ..++|++=. ...+.|+...-. ..+..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 446788899988 2 224666654 445777762111 22333331 234677888884
Q ss_pred ---CEEEEEeCCCcEEEEECCCCC----ccEEEeccccC----------CeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 261 ---SLLSSGSRDKSILQRDIRAQE----DFVSKLSGHKS----------EVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 261 ---~~l~sgs~dg~I~iwd~~~~~----~~~~~~~~h~~----------~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
..|+.....|...|||+.... ........+.+ .-..+.|.++.+.|++++. ..+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 689999999999999992111 11111111122 2347889888888888765 45889999877
Q ss_pred ceeE--EeccCCCcEEEEEEcCC--CCcEEEEEcCCCCCeEEEEECCC
Q 014934 324 QPVL--KYCEHTAAVKAIAWSPH--LHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 324 ~~~~--~~~~h~~~V~~l~~sp~--~~~llasggg~~d~~I~iwd~~t 367 (415)
.... ........|..+.-+|. +..++.| ...|...++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-----s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-----SKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe-----cCeEEEEEccC
Confidence 5422 22234567888888888 3333332 46787888776
|
These proteins are found in fungi. |
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.91 E-value=32 Score=33.35 Aligned_cols=60 Identities=12% Similarity=0.043 Sum_probs=39.9
Q ss_pred cEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEE
Q 014934 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (415)
Q Consensus 347 ~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw 406 (415)
.+++...|..+|.+.-||..+......++.-....+++.|+++.+++.+........+.|
T Consensus 188 ~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw 247 (376)
T KOG1520|consen 188 FVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW 247 (376)
T ss_pred eEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE
Confidence 355555555778888888777654444445566788999999999998754333344455
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=80.90 E-value=65 Score=32.48 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=62.8
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce--eEEec-----cCCCcEEEEEEcCCC------CcEEEEEcCC-
Q 014934 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP--VLKYC-----EHTAAVKAIAWSPHL------HGLLASGGGT- 355 (415)
Q Consensus 290 h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~--~~~~~-----~h~~~V~~l~~sp~~------~~llasggg~- 355 (415)
.-...+.|+|.|||++|++--..|+|++++..++.. +..+. .-......|+++|+- .+++++-+..
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 345678899999998887766579999998655432 22111 135678999999874 3466653200
Q ss_pred ------CCCeEEEEECCCC-------cEE-EEee--CCCCEEEEEECCCCCeEEEEEec
Q 014934 356 ------ADRCIRFWNTTTN-------THL-SCMD--TGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 356 ------~d~~I~iwd~~t~-------~~~-~~~~--~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
....|.-|.+... +.+ ..+. ....-..|.|.|||..++++ |.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~-GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTI-GE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEE-CC
Confidence 1234444544311 111 1111 11234568899999866654 54
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=80.58 E-value=51 Score=34.94 Aligned_cols=245 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCCCCCcceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEE---
Q 014934 161 APALQDDFYLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIW--- 235 (415)
Q Consensus 161 ~~~l~~~~~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iw--- 235 (415)
....+.+..++.+.-+| ..++.+..|++|.+|+.......+++ ....+-..+.|...| |++.+.|..+.-|
T Consensus 8 s~~~k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~--~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 8 SRDPKEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC--EEAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred cCCccccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh--hhcCCccceeeeccc--eEEEeccchhheeecc
Q ss_pred ------------------------------------------------------------------ECCCCeeeEEecCC
Q 014934 236 ------------------------------------------------------------------DASRCKRVRTMEGH 249 (415)
Q Consensus 236 ------------------------------------------------------------------d~~~~~~~~~l~~h 249 (415)
|+.++.........
T Consensus 84 gvvqqqfdyndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~ 163 (1636)
T KOG3616|consen 84 GVVQQQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHK 163 (1636)
T ss_pred CcchhhccccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecC
Q ss_pred CccEEEEEeeC-CEEEEEeCCCcEEEEECCCCCccEEEeccccC--------CeEEEEEeCCCCEEEEEeCCCcE-----
Q 014934 250 RLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKS--------EVCGLKWSYDNRELASGGNDNRL----- 315 (415)
Q Consensus 250 ~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~--------~V~~l~~spdg~~lasg~~dg~I----- 315 (415)
.-.|-.+..-+ +..+.+-...+|.+-|+.+..-....+++..+ +-||+-|+...-.++-=++|+.+
T Consensus 164 g~aidelkilgkdryli~~ts~siii~d~es~rfsei~wqgsgg~ekfffd~~n~cli~nageltlveyg~d~slg~vrt 243 (1636)
T KOG3616|consen 164 GLAIDELKILGKDRYLIAHTSESIIIADLESNRFSEIAWQGSGGHEKFFFDFENCCLIFNAGELTLVEYGNDDSLGSVRT 243 (1636)
T ss_pred CcchhhhhhccccceEEeeccccEEEeecccchhhhhhcccCCCcceeeeecCcEEEEEecCeeEEEEecCCCcchhhhh
Q ss_pred ---------------------------------EEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEE
Q 014934 316 ---------------------------------FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (415)
Q Consensus 316 ---------------------------------~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~i 362 (415)
..-|+++|+...--.--+..-.++-|--..+--+.-.- .=..|.|
T Consensus 244 e~~nphlisvqike~~qksygrnfdse~n~~~a~~~di~tgqicvfsdflqrrtssvffiikakakifndl--qlphi~i 321 (1636)
T KOG3616|consen 244 EFMNPHLISVQIKEACQKSYGRNFDSEDNKKLAEHIDIKTGQICVFSDFLQRRTSSVFFIIKAKAKIFNDL--QLPHIAI 321 (1636)
T ss_pred hhcCceeeehHHHHHHHHhhCCCCCcchhhhHHHHhccccCceeeehhhhhhccccceeeehhhhhhcccc--cCcceee
Q ss_pred -EECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 363 -WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 363 -wd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.|+-.|+....+.|.+.|--+..+..+..|+. -...-.+.++|+.+.++
T Consensus 322 pvdli~g~~~~~inh~~~vdwielne~~~kllf--rdkk~kl~l~di~s~qk 371 (1636)
T KOG3616|consen 322 PVDLIGGQNEGFINHEGAVDWIELNERAHKLLF--RDKKLKLHLVDIESCQK 371 (1636)
T ss_pred eeecccCcccccccccccccceeccchhhhhhc--ccccceeEEEEcccchH
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=80.25 E-value=83 Score=33.19 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=89.5
Q ss_pred CCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe--eeEEec-CCCc------cEEEEEee--CCEEEEEeC-CC---c
Q 014934 207 IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--RVRTME-GHRL------RVGALAWS--SSLLSSGSR-DK---S 271 (415)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~--~~~~l~-~h~~------~V~~l~~~--~~~l~sgs~-dg---~ 271 (415)
-.+.|-+|.+..+++.+++...+|.|++||...+. .+..+. .+.. -|...... .+++++.+. ++ .
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 35789999999999999999999999999993321 111221 1111 12222211 245554444 32 3
Q ss_pred EEEEECCCCCccEEEec-----cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-----C-CcEEEEE
Q 014934 272 ILQRDIRAQEDFVSKLS-----GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH-----T-AAVKAIA 340 (415)
Q Consensus 272 I~iwd~~~~~~~~~~~~-----~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h-----~-~~V~~l~ 340 (415)
.+++.+.........+. .+...=+.+++. +|.+..- .+++|.+|++.+.+...++.-. . ..+.++.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 56666622221222222 122222334444 5655444 6789999999887666555321 1 1233332
Q ss_pred EcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 341 ~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
.|....+|.+. +..|++.|+.-...+.+++
T Consensus 285 -~~s~nRvLLs~----~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 285 -PPSPNRVLLSV----NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred -cCCCCeEEEEc----CCEEEEEeehhhhhhhhhh
Confidence 23333466654 6899999998666665554
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 415 | ||||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 2e-69 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-68 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-67 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 3e-59 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-05 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 1e-04 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 3e-04 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 5e-04 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 8e-04 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 8e-04 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 8e-04 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 9e-04 |
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 415 | |||
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.98 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.98 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.98 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.98 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.98 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.98 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.96 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.96 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.91 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.9 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.9 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.89 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.89 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.89 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.88 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.87 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.87 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.87 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.87 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.87 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.86 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.86 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.86 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.84 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.84 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.83 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.83 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.82 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.8 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.79 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.78 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.78 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.77 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.77 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.77 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.77 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.76 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.75 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.73 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.72 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.71 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.71 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.68 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.68 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.68 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.67 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.67 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.67 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.65 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.64 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.63 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.63 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.63 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.63 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.62 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.61 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.61 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.6 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.58 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.58 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.58 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.58 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.58 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.55 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.54 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.53 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.5 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.49 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.49 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.48 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.48 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.47 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.46 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.46 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.46 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.45 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.44 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.44 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.41 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.4 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.39 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.38 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.38 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.35 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.31 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.29 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.29 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.25 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.22 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.2 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.18 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.16 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.15 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.15 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.12 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.09 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.07 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.06 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.05 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.04 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.04 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.03 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.03 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.03 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.0 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.98 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.97 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.96 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.95 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.94 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.93 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.93 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.93 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.89 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.89 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.88 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.86 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.86 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.85 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.85 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.82 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.82 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.8 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.79 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.77 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.74 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.71 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.71 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.7 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.62 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.59 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.59 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.56 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.55 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.54 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.49 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.48 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.48 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.43 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.43 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.43 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.42 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.38 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.38 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.35 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.31 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.31 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.3 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.3 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.27 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.25 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.23 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.22 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.21 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.21 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.21 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.2 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.17 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.14 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.11 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.1 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.05 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.03 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.01 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.99 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.95 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.8 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.74 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.73 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.72 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.7 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.7 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.64 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.61 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.6 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.58 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.51 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.47 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.47 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.46 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.44 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.43 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.34 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.34 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.3 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.3 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.27 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.19 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.14 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.12 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.07 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.04 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.97 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.86 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.85 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.76 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.7 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.7 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.68 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.39 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.34 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.33 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.32 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.29 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.27 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.26 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.1 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.09 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.93 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.28 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.18 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.9 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.67 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.51 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.57 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 93.52 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.25 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 92.89 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 92.47 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 91.78 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 91.5 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 89.3 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 88.74 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 88.45 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 83.66 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 83.51 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 82.68 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 81.84 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 81.77 | |
| 2rqw_B | 26 | 24-meric peptide from serine/threonine-protein KI | 81.35 |
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=408.95 Aligned_cols=349 Identities=42% Similarity=0.744 Sum_probs=253.5
Q ss_pred CCCCCCCc--ccccccCCCCCCCCccCCCCCCChHHHHHHHHHHhCCCCCCCccCCCCCCCCCcceeecCCCcCCCCCCC
Q 014934 51 PSRSSSNF--DLFNISQPSPNSPAVTDSHKDDNSGTYTALLRAALFGPETPEKKDVLGPPSGRNIFRFKSETRRSLHSLS 128 (415)
Q Consensus 51 p~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 128 (415)
|+|++|++ +.|.+..... +. +...+....|+.++.+.+.+... ...|||.|+..++.++....
T Consensus 2 p~r~~~~~~~a~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~----------~~~~il~~~~~~~~~~~~~~ 66 (420)
T 4gga_A 2 PHRSAAQMEVASFLLSKENQ--PE---NSQTPTKKEHQKAWALNLNGFDV----------EEAKILRLSGKPQNAPEGYQ 66 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccCchhhhhccccccCC--cc---cccCcchHHHHHHHHhhcccccc----------ccceEEeccCCCCCCCcccc
Confidence 89999998 4677653221 10 12234567888888887765322 24689999876544332211
Q ss_pred CcccCCCCCCCcCCCCCCCCCCCCCCCceeccCCCCCCCcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEec-CC
Q 014934 129 PFGFDDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDL-GI 207 (415)
Q Consensus 129 ~~~~~~~~~~~~~~~~~k~~r~i~~~p~~~ld~~~l~~~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~-~~ 207 (415)
..............++++..|+|+..|+++||||.+.+|||+++|+||++++||+|.|++|+|||..++++..++.+ +|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~r~i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~ 146 (420)
T 4gga_A 67 NRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQP 146 (420)
T ss_dssp -------------------CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCST
T ss_pred cCcceecccccCCCCccCCCcccCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCC
Confidence 00000000011234677889999999999999999999999999999999999999999999999999999888876 56
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEe
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKL 287 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 287 (415)
...|++|+|+|+|++||+|+.||.|+|||+.+++.+..+.+|...+.+++|++.+|++|+.|+.+++||.+.....+..+
T Consensus 147 ~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~ 226 (420)
T 4gga_A 147 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL 226 (420)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEe
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999888778889
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc----eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 288 SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ----PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 288 ~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~----~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
.+|...++.+.|+|++++|++++.|+.|+|||..+++ .+.....|.+.|.+++|+|++..++++++|+.|++|++|
T Consensus 227 ~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iw 306 (420)
T 4gga_A 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306 (420)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEE
T ss_pred cccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEE
Confidence 9999999999999999999999999999999998764 456777899999999999999999999888899999999
Q ss_pred ECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 364 NTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 364 d~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
|+.+++++..+.++..++++.|+++++++++++|+.|+.|+|||+++++++
T Consensus 307 d~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v 357 (420)
T 4gga_A 307 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 357 (420)
T ss_dssp ETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred eCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE
Confidence 999999999999999999999999999999988889999999999998764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-49 Score=387.49 Aligned_cols=337 Identities=39% Similarity=0.702 Sum_probs=263.0
Q ss_pred CcccCCCCCCCcccccccCCCCCCCCccCCCCCCChHHHHHHHHHHhCCCCCCCccCCCCCCCCCcceeecCCCcCCCCC
Q 014934 47 DRFIPSRSSSNFDLFNISQPSPNSPAVTDSHKDDNSGTYTALLRAALFGPETPEKKDVLGPPSGRNIFRFKSETRRSLHS 126 (415)
Q Consensus 47 drfip~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 126 (415)
|||||+|+.+|.+.|++.... ....|+..|.+.+.... +.|+|.|...++.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~------------~~r~l~~~~~~~~~~~~ 55 (401)
T 4aez_A 1 DRFIPSRPNTANAFVNSISSD-------------VPFDYSESVAEACGFDL------------NTRVLAFKLDAPEAKKP 55 (401)
T ss_dssp --------------------------------------------------C------------CEEEEEECSCCCCCCCC
T ss_pred CCcCCCchhhhHHHHhhcCCc-------------chHHHHHHHHHHcCCCc------------cCcEEeeCCCCCCCcCc
Confidence 899999997677788874221 23479999998886421 46999998866543322
Q ss_pred CCCcccCCCCCCCcCCCCCCCCCCCCCCCceeccCCCCCCCcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecC
Q 014934 127 LSPFGFDDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLG 206 (415)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~k~~r~i~~~p~~~ld~~~l~~~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~ 206 (415)
.. ....... .......+..|.++..|.++++++...+++++++++|+++.+++++.++.|++|+..+++........
T Consensus 56 ~~-~~~~~~~--~~~~~~~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~ 132 (401)
T 4aez_A 56 VD-LRTQHNR--PQRPVVTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETD 132 (401)
T ss_dssp CC--------------------CCCCCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred cc-chhhccc--ccCCccccccCcCCCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecC
Confidence 21 1101100 01112234678999999999999999999999999999999999999999999999999998888877
Q ss_pred CCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEE
Q 014934 207 IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK 286 (415)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 286 (415)
|...|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|...|.+++|++++|++|+.||.|++||++........
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 212 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGT 212 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999976667888
Q ss_pred eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 287 ~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
+.+|...|++++|+|++++|++|+.|+.|++||+++++++..+..|...|.+++|+|++..++++++|+.|+.|++||+.
T Consensus 213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999999999999999999999877789999999999
Q ss_pred CCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 367 TNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 367 t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+++.+..+.++..|.+++|+|++++|++++|+.||.|++|++++.
T Consensus 293 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 293 TGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp TCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred CCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 999999999999999999999999999987889999999999874
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=321.01 Aligned_cols=270 Identities=50% Similarity=0.923 Sum_probs=248.4
Q ss_pred CCCCCCCCCCCceeccCCCCCCCcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeE
Q 014934 145 VKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHL 223 (415)
Q Consensus 145 ~k~~r~i~~~p~~~ld~~~l~~~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~l 223 (415)
+|..|.||..|+++||||++.+|||+++|+||++++||+|.|++|+|||+.++++.+.+.. +|...|++++|+|+|++|
T Consensus 3 ~~~~r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 3 RKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp ---CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred CCCCcccCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEE
Confidence 4667999999999999999999999999999999999999999999999999999888765 677889999999999999
Q ss_pred EEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCC
Q 014934 224 AVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303 (415)
Q Consensus 224 a~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 303 (415)
|+|+.||.|++||+.+++.+..+.+|...+.++.+.+..+++|+.++.+++|+.......+..+.+|...+..+.+++++
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 162 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999998877788889999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCc----eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCC
Q 014934 304 RELASGGNDNRLFVWNQHSTQ----PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ 379 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~~~~----~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~ 379 (415)
++|++++.|+.|+|||+++++ .......|.+.|.+++++|++..++..++|..++.|++||...+.......+...
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~ 242 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 242 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSC
T ss_pred CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceee
Confidence 999999999999999998764 3455667889999999999998888776667899999999999999988889999
Q ss_pred EEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 380 V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+..+.|++++..+++++|+.|+.|+|||+++++.+
T Consensus 243 v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~ 277 (318)
T 4ggc_A 243 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 277 (318)
T ss_dssp EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred eeeeeecccccceEEEEEcCCCEEEEEECCCCcEE
Confidence 99999999999999877888999999999987754
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=314.53 Aligned_cols=241 Identities=21% Similarity=0.283 Sum_probs=208.2
Q ss_pred CcceeEeecCCC-cEEEEEcCCeEEEEECCCCCeEEeEe---cCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 167 DFYLNLVDWSSH-NVLAVGLGNCVYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 167 ~~~i~~l~ws~~-~~la~~~d~~V~iwd~~~~~~~~~~~---~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
+..|++++|+++ .+++++.|+.|+|||+.+++...... .+|.+.|++|+|+|+|++|++|+.||+|++||+.+++.
T Consensus 82 ~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 82 EAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV 161 (344)
T ss_dssp SSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 345899999994 45555578999999999987544332 38999999999999999999999999999999999999
Q ss_pred eEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEe--ccccCCeEEEEEeC-CCCEEEEEeCCCcEE
Q 014934 243 VRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKL--SGHKSEVCGLKWSY-DNRELASGGNDNRLF 316 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~sp-dg~~lasg~~dg~I~ 316 (415)
+..+.+|...|.+++|++ .+|++|+.|++|++||+++++ ....+ ..|...+.+++|+| ++++||+|+.||.|+
T Consensus 162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~ 240 (344)
T 4gqb_B 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS 240 (344)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-eeeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence 999999999999999983 589999999999999999887 34444 34566799999998 567899999999999
Q ss_pred EEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEE
Q 014934 317 VWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 317 iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 396 (415)
|||+++++++..+.+|...|.+++|+|++..+|++++ .|+.|++||+.+++++....|...|.+++|+|++..|+++
T Consensus 241 ~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs--~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas- 317 (344)
T 4gqb_B 241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS--EDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTT- 317 (344)
T ss_dssp EEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE--TTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEE-
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEE-
Confidence 9999999999999999999999999999977899987 8999999999999988777788999999999999876654
Q ss_pred ecCCCcEEEEECCCC
Q 014934 397 GYSQNQIIVWRYPTM 411 (415)
Q Consensus 397 g~~dg~I~vw~~~s~ 411 (415)
++.|++|++|++++.
T Consensus 318 ~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 318 VGWDHQVVHHVVPTE 332 (344)
T ss_dssp EETTSCEEEEECCC-
T ss_pred EcCCCeEEEEECCCC
Confidence 668999999999864
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=290.92 Aligned_cols=240 Identities=17% Similarity=0.293 Sum_probs=214.5
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.|++++|+| +.+|+++ .|+.|++||+.+++....+. .|...|.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 93 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 589999999 6666666 68999999999998877776 78889999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCC
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~ 323 (415)
.+|...|.+++|+ +.+|++|+.|++|++||++........+.+|...|.+++|+| ++.+||+|+.|+.|++||+++.
T Consensus 94 ~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~ 173 (304)
T 2ynn_A 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (304)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCS
T ss_pred eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 9999999999998 479999999999999999987656778899999999999999 6789999999999999999988
Q ss_pred ceeEEec-cCCCcEEEEEEcCCC-CcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCC
Q 014934 324 QPVLKYC-EHTAAVKAIAWSPHL-HGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 324 ~~~~~~~-~h~~~V~~l~~sp~~-~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
.+...+. +|...|..++|+|.. ..+|++++ .|+.|++||+++++++..+. |...|..++|+|++..|++ |+.|
T Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s--~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s--~s~D 249 (304)
T 2ynn_A 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS--GSED 249 (304)
T ss_dssp SCSEEEECCCTTCEEEEEECCSTTCCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE--EETT
T ss_pred CccceeccCCcCcEEEEEEEEcCCCCEEEEEc--CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEE--EcCC
Confidence 7766664 566889999998842 23778877 89999999999999998887 6788999999999999998 7899
Q ss_pred CcEEEEECCCCcc
Q 014934 401 NQIIVWRYPTMSK 413 (415)
Q Consensus 401 g~I~vw~~~s~~~ 413 (415)
|.|++||..+.+.
T Consensus 250 g~i~iWd~~~~~~ 262 (304)
T 2ynn_A 250 GTLKIWNSSTYKV 262 (304)
T ss_dssp SCEEEEETTTCCE
T ss_pred CeEEEEECCCCce
Confidence 9999999987653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=305.37 Aligned_cols=242 Identities=17% Similarity=0.266 Sum_probs=206.8
Q ss_pred CcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEe---EecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKL---CDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~---~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.-.|.+++|+| +.+|+++.++.|+|||+.+++.... ...+|.+.|++++|+|+|++|++|+.||.|++||+.+++.
T Consensus 94 ~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~ 173 (357)
T 4g56_B 94 EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV 173 (357)
T ss_dssp SSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 34589999999 7778777899999999988765432 2237899999999999999999999999999999999999
Q ss_pred eEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccE-EEeccccCCeEEEEEeCC-CCEEEEEeCCCcEEE
Q 014934 243 VRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFV-SKLSGHKSEVCGLKWSYD-NRELASGGNDNRLFV 317 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~h~~~V~~l~~spd-g~~lasg~~dg~I~i 317 (415)
+..+.+|...|.+++|++ .++++++.||.|++||++++.... .....|...+.+++|+|+ +.+||+|+.|+.|++
T Consensus 174 ~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~ 253 (357)
T 4g56_B 174 LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL 253 (357)
T ss_dssp EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeE
Confidence 999999999999999983 589999999999999999876322 223467788999999997 568999999999999
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECC-CCCeEEEEE
Q 014934 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSK-NVNELVSTH 396 (415)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~-~~~~l~s~~ 396 (415)
||+++++.+..+.+|...|.+++|+|++..+|++++ .|+.|+|||+.+++++..+.|...|++++|+| ++..|++
T Consensus 254 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs--~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s-- 329 (357)
T 4g56_B 254 VNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS--EDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTT-- 329 (357)
T ss_dssp EESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE--TTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEE--
T ss_pred EECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe--CCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEE--
Confidence 999999999999999999999999999987899887 89999999999999999888999999999998 7888888
Q ss_pred ecCCCcEEEEECCCCc
Q 014934 397 GYSQNQIIVWRYPTMS 412 (415)
Q Consensus 397 g~~dg~I~vw~~~s~~ 412 (415)
++.|++|++|++++..
T Consensus 330 ~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 330 VGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EETTSCEEEEECC---
T ss_pred EcCCCeEEEEECCCCC
Confidence 7789999999998753
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=303.30 Aligned_cols=240 Identities=22% Similarity=0.372 Sum_probs=220.2
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
-.|++++|+| +.+|++| .|+.|++||..+++....+. +|.+.|++++|+|+|++|++|+.||+|+|||+.+++++..
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~ 187 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT 187 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Confidence 4699999999 6666666 68999999999999887776 8999999999999999999999999999999999999999
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+.+|...|.+++|+ +++|++|+.|++|++||++++. .+..+.+|...|.++.|+|++.+|++|+.|+.|++||+.++
T Consensus 188 ~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~ 266 (410)
T 1vyh_C 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 266 (410)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999998 4799999999999999999887 67888999999999999999999999999999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCC-------------------CcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEE
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHL-------------------HGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNL 383 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~-------------------~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l 383 (415)
+....+.+|...|.+++|+|++ ..+|++|+ .|+.|++||+.+++++..+. |...|.++
T Consensus 267 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs--~D~~i~iwd~~~~~~~~~~~~h~~~v~~v 344 (410)
T 1vyh_C 267 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDNWVRGV 344 (410)
T ss_dssp CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe--CCCeEEEEECCCCceEEEEECCCCcEEEE
Confidence 9999999999999999999973 23778877 89999999999999988876 67789999
Q ss_pred EECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 384 VWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 384 ~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+|+|++++|++ |+.|+.|++||+.+.+.
T Consensus 345 ~~~~~g~~l~s--~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 345 LFHSGGKFILS--CADDKTLRVWDYKNKRC 372 (410)
T ss_dssp EECSSSSCEEE--EETTTEEEEECCTTSCC
T ss_pred EEcCCCCEEEE--EeCCCeEEEEECCCCce
Confidence 99999999998 78999999999987654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=292.46 Aligned_cols=236 Identities=22% Similarity=0.323 Sum_probs=216.4
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
...|.+++|++ +.+++++ .|+.|++||+.+++....+. .+...+.+++|+|+|++|++|+.+|.|++||+.+++...
T Consensus 80 ~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 80 QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID-AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEe-CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE
Confidence 34589999999 6666666 68999999999998887776 667889999999999999999999999999999999999
Q ss_pred EecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 245 TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
.+..|...|.+++|+ +++|++|+.||.|++||++++. .+..+.+|...|.+++|+|++++|++|+.|+.|+|||+++
T Consensus 159 ~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~ 237 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237 (321)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC
Confidence 999999999999998 5799999999999999999886 6788899999999999999999999999999999999999
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCC
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQN 401 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg 401 (415)
++.+..+.+|...|.+++|+|++. +|++++ .|+.|++||+.+++++..+. +...|.+++|+++++.|++ ++.|+
T Consensus 238 ~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s--~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s--~~~d~ 312 (321)
T 3ow8_A 238 ANLAGTLSGHASWVLNVAFCPDDT-HFVSSS--SDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS--VGDDQ 312 (321)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE--EETTC
T ss_pred cceeEEEcCCCCceEEEEECCCCC-EEEEEe--CCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEE--EeCCC
Confidence 999999999999999999999987 667776 89999999999999998875 6788999999999999998 77999
Q ss_pred cEEEEECC
Q 014934 402 QIIVWRYP 409 (415)
Q Consensus 402 ~I~vw~~~ 409 (415)
.|+|||+|
T Consensus 313 ~i~vwd~p 320 (321)
T 3ow8_A 313 EIHIYDCP 320 (321)
T ss_dssp CEEEEECC
T ss_pred eEEEEeCC
Confidence 99999986
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-36 Score=287.88 Aligned_cols=239 Identities=17% Similarity=0.314 Sum_probs=215.1
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC----e
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC----K 241 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~----~ 241 (415)
-.|.+++|++ +++|+++ .|+.|++||..+++....+. .|...|.+++|+|+|++|++|+.||.|++||+.+. +
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~ 134 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR 134 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee-cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcce
Confidence 3589999999 6666666 68999999999998877776 67889999999999999999999999999999765 4
Q ss_pred eeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 242 RVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
....+.+|...|.++.|. +..+++++.|++|++||++++. .+..+.+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus 135 ~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~ 213 (340)
T 1got_B 135 VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213 (340)
T ss_dssp EEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCc-EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 566788999999999998 5789999999999999999886 57888999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC---CCEEEEEECCCCCeEEEEEe
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG---SQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~---~~V~~l~~s~~~~~l~s~~g 397 (415)
++++.+..+.+|...|.+++|+|++. +|++++ .|+.|++||+++++.+..+.+. ..|.+++|+|++++|++ |
T Consensus 214 ~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--g 288 (340)
T 1got_B 214 REGMCRQTFTGHESDINAICFFPNGN-AFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA--G 288 (340)
T ss_dssp TTCSEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE--E
T ss_pred CCCeeEEEEcCCcCCEEEEEEcCCCC-EEEEEc--CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEE--E
Confidence 99999999999999999999999987 677776 8999999999999888777644 36999999999999999 7
Q ss_pred cCCCcEEEEECCCCcc
Q 014934 398 YSQNQIIVWRYPTMSK 413 (415)
Q Consensus 398 ~~dg~I~vw~~~s~~~ 413 (415)
+.|+.|++||+.+.+.
T Consensus 289 ~~d~~i~vwd~~~~~~ 304 (340)
T 1got_B 289 YDDFNCNVWDALKADR 304 (340)
T ss_dssp ETTSEEEEEETTTCCE
T ss_pred CCCCeEEEEEcccCcE
Confidence 8999999999987654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=288.31 Aligned_cols=242 Identities=19% Similarity=0.322 Sum_probs=215.4
Q ss_pred CCcceeEeecCCC-----cEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC
Q 014934 166 DDFYLNLVDWSSH-----NVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 166 ~~~~i~~l~ws~~-----~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~ 238 (415)
..-.|.+++|++. .+|++| .|+.|++|+..+++......+ +|...|.+++|++++.++++|+.||.|++||+.
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 3457999999872 355555 689999999987765443322 899999999999999999999999999999999
Q ss_pred CCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 239 RCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 239 ~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
+++.+..+..|...+.+++|+ +.+|++|+.||.|++||++.+. ....+..|...|.+++|+|++++||+|+.|+.|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~ 189 (321)
T 3ow8_A 111 NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189 (321)
T ss_dssp TTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEE
Confidence 999999999999999999998 4799999999999999999887 4667788999999999999999999999999999
Q ss_pred EEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEE
Q 014934 317 VWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 317 iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~ 395 (415)
+||+++++.+..+.+|...|.+++|+|++. +|++++ .|+.|++||+.+++.+..+. +...|.+++|+|++.+|++
T Consensus 190 iwd~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s- 265 (321)
T 3ow8_A 190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQ-LLVTAS--DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS- 265 (321)
T ss_dssp EEETTTTEEEEEECCCSSCCCEEEECTTSC-EEEEEC--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE-
T ss_pred EEECCCCcEEEEEcccCCceeEEEEcCCCC-EEEEEc--CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEE-
Confidence 999999999999999999999999999987 777776 89999999999999888876 6678999999999999998
Q ss_pred EecCCCcEEEEECCCCcc
Q 014934 396 HGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 396 ~g~~dg~I~vw~~~s~~~ 413 (415)
|+.|+.|+|||+.+.+.
T Consensus 266 -~s~D~~v~iwd~~~~~~ 282 (321)
T 3ow8_A 266 -SSSDKSVKVWDVGTRTC 282 (321)
T ss_dssp -EETTSCEEEEETTTTEE
T ss_pred -EeCCCcEEEEeCCCCEE
Confidence 77899999999988764
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=296.69 Aligned_cols=235 Identities=19% Similarity=0.347 Sum_probs=213.8
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
-.|.+++|++ +++|++| .|+.|++||+.+++....+. +|...|.+++|+|+|++|++|+.||.|++||+.++.++..
T Consensus 151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~ 229 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT 229 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 3589999999 6677666 68999999999988877765 8899999999999999999999999999999999999999
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC--------------------C
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD--------------------N 303 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd--------------------g 303 (415)
+.+|...|.++.|+ +.+|++|+.|++|++||+++.. ....+.+|...|.+++|+|+ +
T Consensus 230 ~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 308 (410)
T 1vyh_C 230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 308 (410)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCC
Confidence 99999999999998 5799999999999999999886 57788999999999999996 6
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEE
Q 014934 304 RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCN 382 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~ 382 (415)
.+|++|+.|+.|++||+++++++..+.+|...|.+++|+|++. +|++++ .|+.|++||+.+++++..+. |...|.+
T Consensus 309 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s--~D~~i~vwd~~~~~~~~~~~~h~~~v~~ 385 (410)
T 1vyh_C 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK-FILSCA--DDKTLRVWDYKNKRCMKTLNAHEHFVTS 385 (410)
T ss_dssp CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS-CEEEEE--TTTEEEEECCTTSCCCEEEECCSSCEEE
T ss_pred CEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCC-EEEEEe--CCCeEEEEECCCCceEEEEcCCCCcEEE
Confidence 7999999999999999999999999999999999999999998 555665 79999999999999888886 6778999
Q ss_pred EEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 383 LVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 383 l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
++|+|++.+|++ |+.|+.|+||++.
T Consensus 386 l~~~~~~~~l~s--gs~D~~i~vW~~r 410 (410)
T 1vyh_C 386 LDFHKTAPYVVT--GSVDQTVKVWECR 410 (410)
T ss_dssp EEECSSSSCEEE--EETTSEEEEEC--
T ss_pred EEEcCCCCEEEE--EeCCCcEEEEeCC
Confidence 999999999998 7899999999863
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=288.83 Aligned_cols=242 Identities=19% Similarity=0.347 Sum_probs=200.6
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCC------------------------
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT------------------------ 221 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~------------------------ 221 (415)
-.|++++|+| +++|++| .|++|+|||..+++....+. .|...|.+++|+|+|+
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~ 145 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK-LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG 145 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE-CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe-cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC
Confidence 4699999999 6666655 68999999998887666554 4555555555555443
Q ss_pred --------------------------eEEEEECCCcEEEEECCCCeeeEEe-----cCCCccEEEEEee---CCEEEEEe
Q 014934 222 --------------------------HLAVGTSHGKVQIWDASRCKRVRTM-----EGHRLRVGALAWS---SSLLSSGS 267 (415)
Q Consensus 222 --------------------------~la~g~~dg~V~iwd~~~~~~~~~l-----~~h~~~V~~l~~~---~~~l~sgs 267 (415)
.|++|+.||+|++||+.+++.+..+ .+|...|.+++|+ +++|++|+
T Consensus 146 ~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs 225 (380)
T 3iz6_a 146 NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225 (380)
T ss_dssp SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEE
T ss_pred CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEE
Confidence 4666666777777777777777666 5788999999996 57999999
Q ss_pred CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC-------CcEEEEE
Q 014934 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHT-------AAVKAIA 340 (415)
Q Consensus 268 ~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~-------~~V~~l~ 340 (415)
.|++|++||++.....+..+.+|...|.+++|+|++++|++|+.|+.|+|||+++++.+..+..+. ..|.+++
T Consensus 226 ~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (380)
T 3iz6_a 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA 305 (380)
T ss_dssp TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEE
T ss_pred CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEE
Confidence 999999999986655678899999999999999999999999999999999999999888876543 2489999
Q ss_pred EcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe-----eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcccC
Q 014934 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM-----DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKVL 415 (415)
Q Consensus 341 ~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~-----~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ll 415 (415)
|+|++. +|++|+ .|+.|++||+.+++.+..+ .|...|.+++|+|+|.+|++ |+.|+.|+||++...++++
T Consensus 306 ~s~~g~-~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s--gs~D~~i~iW~~~~~~~iv 380 (380)
T 3iz6_a 306 FSISGR-LLFAGY--SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT--GSWDKNLKIWAFSGHRKIV 380 (380)
T ss_dssp ECSSSS-EEEEEC--TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEE--ECTTSCEEEEECCSSSSCC
T ss_pred ECCCCC-EEEEEE--CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEE--eeCCCCEEEEecCCCcccC
Confidence 999998 666666 8999999999999988776 26678999999999999999 8899999999999887764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=277.77 Aligned_cols=233 Identities=18% Similarity=0.352 Sum_probs=201.2
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEe------------------------------------------
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCD------------------------------------------ 204 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~------------------------------------------ 204 (415)
.|++++|+| +..|+++ .|+.|++||..+++....+.
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~ 145 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAA 145 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGG
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccc
Confidence 478888888 5555555 57888888876655432221
Q ss_pred -----cCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee----CCEEEEEeCCCcEEEE
Q 014934 205 -----LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQR 275 (415)
Q Consensus 205 -----~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~iw 275 (415)
..|...|.+++|+|++..|++|+.||+|++||+.+++.+..+.+|...|.+++|+ +++|++|+.||.|++|
T Consensus 146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 1467789999999999999999999999999999999999999999999999986 3699999999999999
Q ss_pred ECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccC--CCcEEEEEEcCCCCcEEEEEc
Q 014934 276 DIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH--TAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 276 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~sp~~~~llasgg 353 (415)
|++++. .+..+.+|...|.+++|+|++.+||+|+.|+.|++||+++++.+..+..+ ...+.+++|+|++. +|++++
T Consensus 226 d~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~ 303 (354)
T 2pbi_B 226 DMRSGQ-CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR-LLFAGY 303 (354)
T ss_dssp ETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS-EEEEEE
T ss_pred ECCCCc-EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC-EEEEEE
Confidence 999887 67888999999999999999999999999999999999998877776543 45789999999997 666766
Q ss_pred CCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 354 GTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 354 g~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
.|+.|++||+.+++.+..+. |...|.+++|+|++++|++ |+.|+.|+||+
T Consensus 304 --~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s--gs~D~~v~vW~ 354 (354)
T 2pbi_B 304 --NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCS--GSWDHTLRVWA 354 (354)
T ss_dssp --TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEE--EETTSEEEEEC
T ss_pred --CCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEE--EcCCCCEEecC
Confidence 89999999999999887775 7788999999999999999 78999999996
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=276.21 Aligned_cols=232 Identities=18% Similarity=0.334 Sum_probs=205.2
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCC----eEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK----VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~----~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
..+.+++|+| +++|+++ .|+.|++|++.+++ ....+. +|.+.|.++.|++++. +++|+.||.|++||+.+++
T Consensus 98 ~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~ 175 (340)
T 1got_B 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQ 175 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE-CCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEec-CCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCc
Confidence 3588999999 6777766 68999999998764 223333 8899999999998875 8899999999999999999
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd 319 (415)
.+..+.+|...|.+++|+ +.+|++|+.|+.|++||++++. ....+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus 176 ~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd 254 (340)
T 1got_B 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 999999999999999998 4699999999999999999886 5788899999999999999999999999999999999
Q ss_pred CCCCceeEEecc--CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEE
Q 014934 320 QHSTQPVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 320 ~~~~~~~~~~~~--h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~ 396 (415)
+++++.+..+.. +...|.+++|+|++. +|++|+ .|+.|++||+.+++.+..+. |...|.+++|+|++.+|++
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~--~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s-- 329 (340)
T 1got_B 255 LRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGY--DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT-- 329 (340)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSS-EEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEE--
T ss_pred CCCCcEEEEEccCCcccceEEEEECCCCC-EEEEEC--CCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEE--
Confidence 999988877743 335799999999997 666766 89999999999999888776 6788999999999999999
Q ss_pred ecCCCcEEEEE
Q 014934 397 GYSQNQIIVWR 407 (415)
Q Consensus 397 g~~dg~I~vw~ 407 (415)
|+.|+.|+|||
T Consensus 330 ~s~D~~i~iWd 340 (340)
T 1got_B 330 GSWDSFLKIWN 340 (340)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCccEEecC
Confidence 78999999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=284.39 Aligned_cols=238 Identities=17% Similarity=0.242 Sum_probs=198.1
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCC----------CeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSS----------KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA 237 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~----------~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~ 237 (415)
.|++++|+| +.+|+++.++++++||.... .........+...|.+++|+|++ .|++|+.||.|+|||+
T Consensus 32 ~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~ 110 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWEL 110 (344)
T ss_dssp EEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEec
Confidence 589999999 88898888888888863210 00011111345789999999985 6889999999999999
Q ss_pred CCCeeeEE----ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCC-CEEEEEe
Q 014934 238 SRCKRVRT----MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN-RELASGG 310 (415)
Q Consensus 238 ~~~~~~~~----l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~lasg~ 310 (415)
.+++.+.. +.+|...|.+++|+ +++|++|+.|++|++||++++. .+..+.+|...|.+++|+|++ .+|++|+
T Consensus 111 ~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~s 189 (344)
T 4gqb_B 111 DENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV-VLSSYRAHAAQVTCVAASPHKDSVFLSCS 189 (344)
T ss_dssp CTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred cCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCcCCceEEEEecCCCCCceeeec
Confidence 98875543 34899999999998 5799999999999999999886 688899999999999999988 4789999
Q ss_pred CCCcEEEEECCCCceeEEec--cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECC
Q 014934 311 NDNRLFVWNQHSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSK 387 (415)
Q Consensus 311 ~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~ 387 (415)
.|+.|+|||+++++++..+. .|...+.+++|+|++..+|++|+ .|+.|++||+++++++..+. |...|.+++|+|
T Consensus 190 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~--~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp 267 (344)
T 4gqb_B 190 EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD--ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP 267 (344)
T ss_dssp TTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE--TTSEEEEEESCC--CCEEEECCSSCEEEEEECS
T ss_pred cccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec--cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence 99999999999999888774 45667999999998888999987 89999999999999988886 678899999999
Q ss_pred CCC-eEEEEEecCCCcEEEEECCCCc
Q 014934 388 NVN-ELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 388 ~~~-~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
++. +|++ |+.|+.|+|||+.+.+
T Consensus 268 ~g~~~las--gs~D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 268 HSVPFLAS--LSEDCSLAVLDSSLSE 291 (344)
T ss_dssp SSSCCEEE--EETTSCEEEECTTCCE
T ss_pred CCCeEEEE--EeCCCeEEEEECCCCc
Confidence 985 5666 7899999999998765
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=272.08 Aligned_cols=237 Identities=20% Similarity=0.355 Sum_probs=200.2
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCC--CeEEeEecCCCCCeEEEEEcC--CCCeEEEEECCCcEEEEECCCCe
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSS--KVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~--~~~~~~~~~~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
-.|++++|++ +++||++ .|+.|+||++.++ +....+. +|.+.|.+++|++ +|++||+|+.||+|+|||+.+++
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~ 88 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR 88 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence 3689999999 7777776 5899999998754 4444444 8999999999986 48999999999999999998764
Q ss_pred --eeEEecCCCccEEEEEeeC----CEEEEEeCCCcEEEEECCCCCc-cEEEeccccCCeEEEEEeCC------------
Q 014934 242 --RVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQED-FVSKLSGHKSEVCGLKWSYD------------ 302 (415)
Q Consensus 242 --~~~~l~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spd------------ 302 (415)
.+..+.+|...|.+++|++ .+|++|+.|+.|++||++.... ....+.+|...|.+++|+|+
T Consensus 89 ~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~ 168 (297)
T 2pm7_B 89 WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168 (297)
T ss_dssp BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----------
T ss_pred eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCC
Confidence 5677888999999999984 5899999999999999987642 24567899999999999997
Q ss_pred -CCEEEEEeCCCcEEEEECCCCc----eeEEeccCCCcEEEEEEcCCC--CcEEEEEcCCCCCeEEEEECCCCc---EEE
Q 014934 303 -NRELASGGNDNRLFVWNQHSTQ----PVLKYCEHTAAVKAIAWSPHL--HGLLASGGGTADRCIRFWNTTTNT---HLS 372 (415)
Q Consensus 303 -g~~lasg~~dg~I~iwd~~~~~----~~~~~~~h~~~V~~l~~sp~~--~~llasggg~~d~~I~iwd~~t~~---~~~ 372 (415)
+++||+|+.|+.|+|||+++++ .+..+.+|...|.+++|+|++ ..+|++++ .|+.|++||+.++. ...
T Consensus 169 ~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s--~D~~v~iWd~~~~~~~~~~~ 246 (297)
T 2pm7_B 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS--QDRTCIIWTQDNEQGPWKKT 246 (297)
T ss_dssp -CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCEEE
T ss_pred CcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE--CCCcEEEEEeCCCCCcccee
Confidence 5799999999999999998765 566788999999999999986 45888887 89999999998753 122
Q ss_pred Ee---eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 373 CM---DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 373 ~~---~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.+ .+...|.+++|+|+++.|++ ++.|+.|+||+..
T Consensus 247 ~~~~~~~~~~v~~~~~s~~g~~las--~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 247 LLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKEN 284 (297)
T ss_dssp ESSSSCCSSCEEEEEECSSSCCEEE--EETTSCEEEEEEC
T ss_pred eeecccCCCcEEEEEECCCCCEEEE--EcCCCcEEEEEEC
Confidence 22 24678999999999999998 7789999999986
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=273.26 Aligned_cols=236 Identities=21% Similarity=0.327 Sum_probs=208.0
Q ss_pred CcceeEeecCC-C-cEEEEE-cCCeEEEEECCCCC-----eEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC
Q 014934 167 DFYLNLVDWSS-H-NVLAVG-LGNCVYLWNACSSK-----VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 167 ~~~i~~l~ws~-~-~~la~~-~d~~V~iwd~~~~~-----~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~ 238 (415)
.-.|++++|++ + ++|+++ .|+.|++|++.+.. ....+. +|...|.+++|+|+|++|++|+.||+|+|||+.
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~ 95 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 34689999998 3 566665 68999999986432 233343 899999999999999999999999999999999
Q ss_pred CCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC------CCEEEEEe
Q 014934 239 RCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD------NRELASGG 310 (415)
Q Consensus 239 ~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd------g~~lasg~ 310 (415)
+++.+..+.+|...|.+++|+ +.+|++|+.|++|++||++.. .+..+.+|...|.+++|+|. +.+|++|+
T Consensus 96 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~ 173 (319)
T 3frx_A 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173 (319)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECCC------CCEEEEEE
T ss_pred CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe
Confidence 999999999999999999998 479999999999999999754 47788899999999999984 45899999
Q ss_pred CCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCC
Q 014934 311 NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390 (415)
Q Consensus 311 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~ 390 (415)
.|+.|++||+++.+....+.+|...|.+++|+|++. +|++++ .|+.|++||+.+++.+..+.....|.+++|+|++.
T Consensus 174 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~ 250 (319)
T 3frx_A 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250 (319)
T ss_dssp TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS-EEEEEE--TTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSS
T ss_pred CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC-EEEEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCC
Confidence 999999999999999999999999999999999987 777776 89999999999999999998888999999999999
Q ss_pred eEEEEEecCCCcEEEEECCCC
Q 014934 391 ELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 391 ~l~s~~g~~dg~I~vw~~~s~ 411 (415)
.|++ +. ++.+++|++...
T Consensus 251 ~la~--~~-~~~i~v~~~~~~ 268 (319)
T 3frx_A 251 WLAA--AT-ATGIKVFSLDPQ 268 (319)
T ss_dssp EEEE--EE-TTEEEEEEETTE
T ss_pred EEEE--Ec-CCCcEEEEeCcC
Confidence 9988 43 456999998753
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=279.96 Aligned_cols=239 Identities=22% Similarity=0.424 Sum_probs=206.5
Q ss_pred CCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 166 DDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 166 ~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
.+.+|++++|+| +++|+++ .|+.|++||+.+++....+. +|...|.+++|+|++++|++|+.||.|++||+.+++..
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 200 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE
Confidence 455799999999 6777776 58999999999998877775 89999999999999999999999999999999999888
Q ss_pred EEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEe-------ccccCCeEEEEEeCCCCEEEEEeCCC
Q 014934 244 RTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKL-------SGHKSEVCGLKWSYDNRELASGGNDN 313 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~-------~~h~~~V~~l~~spdg~~lasg~~dg 313 (415)
..+. +...+.+++|+ +.+|++|+.||.|++||++++. .+..+ .+|...|.+++|+|++++|++|+.|+
T Consensus 201 ~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~ 278 (393)
T 1erj_A 201 LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278 (393)
T ss_dssp EEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 7776 56779999997 4799999999999999999876 34444 57999999999999999999999999
Q ss_pred cEEEEECCCC------------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCE
Q 014934 314 RLFVWNQHST------------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQV 380 (415)
Q Consensus 314 ~I~iwd~~~~------------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V 380 (415)
.|++||+++. .+...+.+|...|.+++|+|++. +|++++ .|+.|++||+.+++.+..+. |...|
T Consensus 279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs--~D~~v~iwd~~~~~~~~~l~~h~~~v 355 (393)
T 1erj_A 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGS--KDRGVLFWDKKSGNPLLMLQGHRNSV 355 (393)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEE--TTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEe--CCCeEEEEECCCCeEEEEECCCCCCE
Confidence 9999999753 34567789999999999999987 667776 89999999999999988886 67889
Q ss_pred EEEEECC------CCCeEEEEEecCCCcEEEEECCCCc
Q 014934 381 CNLVWSK------NVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 381 ~~l~~s~------~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
.+++|++ +++.|++ |+.|+.|+||++....
T Consensus 356 ~~v~~~~~~~~~p~~~~l~s--gs~Dg~i~iW~~~~~~ 391 (393)
T 1erj_A 356 ISVAVANGSSLGPEYNVFAT--GSGDCKARIWKYKKIA 391 (393)
T ss_dssp EEEEECSSCTTCTTCEEEEE--EETTSEEEEEEEEEC-
T ss_pred EEEEecCCcCcCCCCCEEEE--ECCCCcEEECcccccC
Confidence 9999986 6778888 7899999999987653
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=270.84 Aligned_cols=234 Identities=19% Similarity=0.342 Sum_probs=206.1
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
..|++++|++ +.+|+++ .|+.|++||+.+++....+. +|...|.+++|+|++.+|++|+.||.|++||+. ++++..
T Consensus 66 ~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~ 143 (319)
T 3frx_A 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT 143 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEE
Confidence 4689999999 6666665 68999999999999877776 899999999999999999999999999999996 567788
Q ss_pred ecCCCccEEEEEeeC--------CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 014934 246 MEGHRLRVGALAWSS--------SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (415)
Q Consensus 246 l~~h~~~V~~l~~~~--------~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~i 317 (415)
+.+|...|.++.|.+ ..|++|+.|+.|++||++... ....+.+|...|.+++|+|++++||+|+.||.|+|
T Consensus 144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~i 222 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222 (319)
T ss_dssp ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 899999999999974 279999999999999999876 56778899999999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee---------CCCCEEEEEECCC
Q 014934 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---------TGSQVCNLVWSKN 388 (415)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~---------~~~~V~~l~~s~~ 388 (415)
||+.+++.+..+.. ...|.+++|+|++. +++++. +..|++|++..+..+..+. +...+.+++|+|+
T Consensus 223 wd~~~~~~~~~~~~-~~~v~~~~~sp~~~-~la~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 297 (319)
T 3frx_A 223 WNLAAKKAMYTLSA-QDEVFSLAFSPNRY-WLAAAT---ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297 (319)
T ss_dssp EETTTTEEEEEEEC-CSCEEEEEECSSSS-EEEEEE---TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTT
T ss_pred EECCCCcEEEEecC-CCcEEEEEEcCCCC-EEEEEc---CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCC
Confidence 99999999988865 46899999999987 666654 5679999999887776664 2456899999999
Q ss_pred CCeEEEEEecCCCcEEEEECCCC
Q 014934 389 VNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
|++|++ |+.||.|+||++.+.
T Consensus 298 g~~l~s--g~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 298 GQTLFA--GYTDNVIRVWQVMTA 318 (319)
T ss_dssp SSEEEE--EETTSCEEEEEEEEC
T ss_pred CCEEEE--eecCceEEEEEEeec
Confidence 999999 789999999998764
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-34 Score=268.21 Aligned_cols=236 Identities=17% Similarity=0.253 Sum_probs=206.7
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC-eeeE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC-KRVR 244 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~-~~~~ 244 (415)
..+.++.|++ +++|+++ .|+.|++||+.+++....+. +|.+.|++++|+|++++|++|+.||+|++||+.++ ....
T Consensus 56 ~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~ 134 (304)
T 2ynn_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ 134 (304)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE
T ss_pred CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe-CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh
Confidence 3588999999 6666666 68999999999999887776 89999999999999999999999999999999877 5667
Q ss_pred EecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC--CCCEEEEEeCCCcEEEEE
Q 014934 245 TMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY--DNRELASGGNDNRLFVWN 319 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~lasg~~dg~I~iwd 319 (415)
.+.+|...|.+++|++ ..|++|+.|++|++||++..........+|...|..+.|+| ++.+|++|+.|+.|+|||
T Consensus 135 ~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd 214 (304)
T 2ynn_A 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214 (304)
T ss_dssp EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEE
T ss_pred hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEe
Confidence 7899999999999984 58999999999999999887755555567778899999987 778999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCe--EEEEE
Q 014934 320 QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNE--LVSTH 396 (415)
Q Consensus 320 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~--l~s~~ 396 (415)
+++++++..+.+|...|.+++|+|++. +|++++ .|+.|++||+.+++++..+. +...+.+++|+|++.. +++
T Consensus 215 ~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s--~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as-- 289 (304)
T 2ynn_A 215 YQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGS--EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS-- 289 (304)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECSSSS-EEEEEE--TTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEE--
T ss_pred CCCCccceeeCCCCCCEEEEEECCCCC-EEEEEc--CCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEE--
Confidence 999999999999999999999999987 777877 89999999999999999887 4578999999998863 555
Q ss_pred ecCCCcEEEEECCC
Q 014934 397 GYSQNQIIVWRYPT 410 (415)
Q Consensus 397 g~~dg~I~vw~~~s 410 (415)
|+ ++.+.+|++..
T Consensus 290 g~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 290 GF-DNGFTVLSLGN 302 (304)
T ss_dssp EE-TTEEEEEECC-
T ss_pred ec-CCceEEEEecc
Confidence 54 55788888765
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=266.38 Aligned_cols=240 Identities=21% Similarity=0.363 Sum_probs=208.7
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
...|++++|+| +++|+++ .|+.|++|+..+++....+. +|...|.+++|+|++++|++|+.||.|++||+.+++.+.
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 101 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 101 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc-cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEE
Confidence 34699999999 6777666 68999999999998877775 888999999999999999999999999999999999999
Q ss_pred EecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 245 TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
.+.+|...|.+++|+ +.+|++|+.|+.|++||++++. .+..+..|...|.+++|+|++++|++|+.|+.|++||+++
T Consensus 102 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 180 (312)
T 4ery_A 102 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180 (312)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 999999999999998 4799999999999999999886 5778889999999999999999999999999999999999
Q ss_pred CceeEEec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC-CC---EEEEEECCCCCeEEEEEe
Q 014934 323 TQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQ---VCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 323 ~~~~~~~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-~~---V~~l~~s~~~~~l~s~~g 397 (415)
++.+..+. .+...+..++|+|+++ +|++++ .|+.|++||+.+++.+..+... .. +......+++.+|++ |
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--g 255 (312)
T 4ery_A 181 GQCLKTLIDDDNPPVSFVKFSPNGK-YILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS--G 255 (312)
T ss_dssp CCEEEEECCSSCCCEEEEEECTTSS-EEEEEE--TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE--C
T ss_pred CceeeEEeccCCCceEEEEECCCCC-EEEEEc--CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE--E
Confidence 98887764 5667899999999998 555555 7999999999999988887532 22 233334467788888 8
Q ss_pred cCCCcEEEEECCCCcc
Q 014934 398 YSQNQIIVWRYPTMSK 413 (415)
Q Consensus 398 ~~dg~I~vw~~~s~~~ 413 (415)
+.||.|++||+.+.+.
T Consensus 256 ~~dg~i~vwd~~~~~~ 271 (312)
T 4ery_A 256 SEDNLVYIWNLQTKEI 271 (312)
T ss_dssp CTTSCEEEEETTTCCE
T ss_pred CCCCEEEEEECCCchh
Confidence 8999999999987654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-34 Score=278.16 Aligned_cols=241 Identities=21% Similarity=0.317 Sum_probs=205.6
Q ss_pred CcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecC-----------------CCCCeEEEEEcCCCCeEEEEEC
Q 014934 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLG-----------------IDDSVCSVGWANRNTHLAVGTS 228 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~-----------------~~~~V~~v~~sp~g~~la~g~~ 228 (415)
.-.|++++|+| +.+||++.++.+++|++.+++....+... +...|++++|+|+|++||+|+.
T Consensus 64 ~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp SSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred CCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 34689999999 88999999999999999999877665311 1224999999999999999999
Q ss_pred CCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCE
Q 014934 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRE 305 (415)
Q Consensus 229 dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 305 (415)
||.|+|||+.+++.+..+.+|...|.+++|+ +.+|++|+.|++|++||++++. ....+. +...+.+++|+| ++++
T Consensus 144 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~ 221 (393)
T 1erj_A 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLTLS-IEDGVTTVAVSPGDGKY 221 (393)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEE-CSSCEEEEEECSTTCCE
T ss_pred CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-eEEEEE-cCCCcEEEEEECCCCCE
Confidence 9999999999999999999999999999998 5799999999999999999876 344443 567899999999 8999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEe-------ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc---------
Q 014934 306 LASGGNDNRLFVWNQHSTQPVLKY-------CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT--------- 369 (415)
Q Consensus 306 lasg~~dg~I~iwd~~~~~~~~~~-------~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~--------- 369 (415)
|++|+.|+.|++||+++++.+..+ .+|...|.+++|+|++. +|++++ .|+.|++||+.+..
T Consensus 222 l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s--~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGS--LDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEEC-------------
T ss_pred EEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCCCcccccCCC
Confidence 999999999999999999887776 57999999999999997 667776 89999999997643
Q ss_pred ---EEEEe-eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 370 ---HLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 370 ---~~~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+...+ .|...|.+++|++++.+|++ |+.|+.|++||..+++.+
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--gs~D~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPL 345 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEE--EETTSEEEEEETTTCCEE
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEE--EeCCCeEEEEECCCCeEE
Confidence 33333 36678999999999999998 789999999999887643
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=294.92 Aligned_cols=236 Identities=21% Similarity=0.294 Sum_probs=203.2
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe--eeEE-
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--RVRT- 245 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~--~~~~- 245 (415)
..+++|+| ++.|+++.++.|++|++.+++....+. +|...|++++|+|+|++||+|+.||+|+|||+.+++ ....
T Consensus 21 ~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~ 99 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI 99 (611)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE
T ss_pred eeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEec-CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee
Confidence 45788999 789999989999999999888777775 899999999999999999999999999999985422 1112
Q ss_pred -------------------------------------------ecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCC
Q 014934 246 -------------------------------------------MEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRA 279 (415)
Q Consensus 246 -------------------------------------------l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~ 279 (415)
+.+|...|.+++|++ ..|++|+.|++|++||...
T Consensus 100 ~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~ 179 (611)
T 1nr0_A 100 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 179 (611)
T ss_dssp ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC
Confidence 235667777888874 2699999999999999887
Q ss_pred CCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec-------cCCCcEEEEEEcCCCCcEEEEE
Q 014934 280 QEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-------EHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 280 ~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~llasg 352 (415)
.. ....+.+|...|.+++|+|+|++||+|+.|+.|+|||+.+++.+..+. +|.+.|.+++|+|++. +|+++
T Consensus 180 ~~-~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~ 257 (611)
T 1nr0_A 180 FK-FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASA 257 (611)
T ss_dssp BE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEE
T ss_pred Ce-EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC-EEEEE
Confidence 65 577889999999999999999999999999999999999999888884 7999999999999987 67777
Q ss_pred cCCCCCeEEEEECCCCcEEEEe--------------------------------------------eCCCCEEEEEECCC
Q 014934 353 GGTADRCIRFWNTTTNTHLSCM--------------------------------------------DTGSQVCNLVWSKN 388 (415)
Q Consensus 353 gg~~d~~I~iwd~~t~~~~~~~--------------------------------------------~~~~~V~~l~~s~~ 388 (415)
+ .|++|++||+.+++++..+ .|...|.+++|+|+
T Consensus 258 s--~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spd 335 (611)
T 1nr0_A 258 S--ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSAD 335 (611)
T ss_dssp E--TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred e--CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCC
Confidence 6 8999999999988765543 24567999999999
Q ss_pred CCeEEEEEecCCCcEEEEECCCCc
Q 014934 389 VNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+++|++ ++.|+.|++||+.+.+
T Consensus 336 g~~l~s--~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 336 GKTLFS--ADAEGHINSWDISTGI 357 (611)
T ss_dssp SSEEEE--EETTSCEEEEETTTCC
T ss_pred CCEEEE--EeCCCcEEEEECCCCc
Confidence 999999 7789999999998764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=274.72 Aligned_cols=238 Identities=22% Similarity=0.389 Sum_probs=202.7
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEe--EecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC--ee
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKL--CDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC--KR 242 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~--~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~--~~ 242 (415)
.+.+++|+| +.+||++ .|+.|+||+..++..... ...+|...|.+++|+|+|++||+|+.||.|+|||+.++ +.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC 97 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence 588999999 6777766 689999999988764322 22378999999999999999999999999999998776 46
Q ss_pred eEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC--ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 014934 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iw 318 (415)
+..+.+|...|.+++|+ +++|++|+.|++|++||++... ..+..+.+|...|.+++|+|++++||+|+.|+.|++|
T Consensus 98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w 177 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEE
T ss_pred EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEE
Confidence 78899999999999998 5799999999999999998764 2356778999999999999999999999999999999
Q ss_pred ECCCCc--eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC---------------cEEEEee--CCCC
Q 014934 319 NQHSTQ--PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN---------------THLSCMD--TGSQ 379 (415)
Q Consensus 319 d~~~~~--~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~---------------~~~~~~~--~~~~ 379 (415)
|.++++ +...+.+|...|.+++|+|++. +|++++ .|+.|++||.... +++..+. +...
T Consensus 178 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s--~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 254 (345)
T 3fm0_A 178 REEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLASCS--DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254 (345)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC
T ss_pred EecCCCEEEEEEecCCCCceEEEEECCCCC-EEEEEe--CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc
Confidence 998775 4567889999999999999987 677776 8999999996322 2233332 5678
Q ss_pred EEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 380 V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
|.+++|++++..|++ ++.|+.|++|+....
T Consensus 255 v~~v~~~~~~~~l~s--~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 255 IYDIAWCQLTGALAT--ACGDDAIRVFQEDPN 284 (345)
T ss_dssp EEEEEECTTTCCEEE--EETTSCEEEEEECTT
T ss_pred EEEEEEecCCCEEEE--EeCCCeEEEEEeCCC
Confidence 999999999999998 678999999998653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-34 Score=272.46 Aligned_cols=238 Identities=23% Similarity=0.330 Sum_probs=194.4
Q ss_pred cceeEeecCCCcEEEEE-cCCeEEEEECCCCC--eEEeEecC-CCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC----
Q 014934 168 FYLNLVDWSSHNVLAVG-LGNCVYLWNACSSK--VTKLCDLG-IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR---- 239 (415)
Q Consensus 168 ~~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~--~~~~~~~~-~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~---- 239 (415)
-.|.+++|+++ +|+++ .|+.|++|++.++. ....+..+ |...|.+++|+|++++||+|+.||.|+|||+..
T Consensus 15 ~~v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~ 93 (330)
T 2hes_X 15 EKIWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR 93 (330)
T ss_dssp SCEEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC------
T ss_pred CceeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc
Confidence 35889999988 55555 68999999998764 33334234 899999999999999999999999999999843
Q ss_pred ---CeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC---ccEEEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 240 ---CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE---DFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 240 ---~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
.+.+..+.+|...|.+++|+ +.+|++|+.|++|++||++... ..+..+.+|...|.+++|+|++.+|++|+.
T Consensus 94 ~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 173 (330)
T 2hes_X 94 TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY 173 (330)
T ss_dssp -CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC
Confidence 45677889999999999998 5799999999999999995432 346678899999999999999999999999
Q ss_pred CCcEEEEECCCC--ceeEEeccCCCcEEEEEEcCCCC-cEEEEEcCCCCCeEEEEECCCC--------cEEEEee--CCC
Q 014934 312 DNRLFVWNQHST--QPVLKYCEHTAAVKAIAWSPHLH-GLLASGGGTADRCIRFWNTTTN--------THLSCMD--TGS 378 (415)
Q Consensus 312 dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~sp~~~-~llasggg~~d~~I~iwd~~t~--------~~~~~~~--~~~ 378 (415)
|+.|++||..++ +++..+.+|...|.+++|+|++. .+|++++ .|+.|++||+.++ .+...+. +..
T Consensus 174 D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS--DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE--TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred CCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe--CCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 999999998776 67888999999999999999842 3678877 8999999998764 3333443 667
Q ss_pred CEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 379 QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 379 ~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
.|.+++|++++ .|++ ++.||.|+||+..+.
T Consensus 252 ~v~~v~~s~~~-~l~s--~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 252 QVYNVAWGFNG-LIAS--VGADGVLAVYEEVDG 281 (330)
T ss_dssp CEEEEEECTTS-CEEE--EETTSCEEEEEEETT
T ss_pred ceEEEEEcCCC-EEEE--EeCCCEEEEEEcCCC
Confidence 89999999765 6777 678999999998764
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=262.48 Aligned_cols=239 Identities=21% Similarity=0.302 Sum_probs=208.0
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
..|.+++|+| +++|+++ .|+.|++||+.+++....+. +|...|.+++|+|++++|++|+.||.|++||+.+++.+..
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 144 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 144 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE
Confidence 4589999999 6666666 68999999999999887776 7889999999999999999999999999999999999999
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+..|...|.+++|+ +.+|++|+.||.|++||+++..........+...+..++|+|++++|++++.|+.|++||++++
T Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 224 (312)
T 4ery_A 145 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999998 5799999999999999999887433444567778999999999999999999999999999999
Q ss_pred ceeEEeccCCCcEE--EEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCC
Q 014934 324 QPVLKYCEHTAAVK--AIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 324 ~~~~~~~~h~~~V~--~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
+.+..+.+|...+. ...+++.+..++++++ .|+.|++||+.+++.+..+. |...|.+++|+|+++.|++++...|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d 302 (312)
T 4ery_A 225 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 302 (312)
T ss_dssp EEEEEECSSCCSSSCCCEEEECSSSCEEEECC--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTT
T ss_pred cEEEEEEecCCceEEEEEEEEeCCCcEEEEEC--CCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCC
Confidence 99999988876543 2345544445788877 89999999999999998886 6778999999999999998543479
Q ss_pred CcEEEEECC
Q 014934 401 NQIIVWRYP 409 (415)
Q Consensus 401 g~I~vw~~~ 409 (415)
+.|++|+..
T Consensus 303 ~~i~~W~~d 311 (312)
T 4ery_A 303 KTIKLWKSD 311 (312)
T ss_dssp CCEEEEECC
T ss_pred ccEEEecCC
Confidence 999999964
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=269.52 Aligned_cols=243 Identities=23% Similarity=0.409 Sum_probs=196.9
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC---
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC--- 240 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~--- 240 (415)
...|++++|+| +++|+++ .|+.|++|+..++.......+ +|...|.+++|+|+|++|++|+.||.|++||+.++
T Consensus 61 ~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 140 (345)
T 3fm0_A 61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY 140 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE
T ss_pred CCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe
Confidence 34699999999 7777776 589999999988754333222 78999999999999999999999999999999765
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC-ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~i 317 (415)
+.+..+.+|...|.+++|+ +.+|++|+.|+.|++||++... .....+.+|...|.+++|+|+|++||+|+.|+.|+|
T Consensus 141 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~i 220 (345)
T 3fm0_A 141 ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI 220 (345)
T ss_dssp EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEE
Confidence 4567788999999999998 4799999999999999998765 234678899999999999999999999999999999
Q ss_pred EECCCC---------------ceeEEecc-CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE--------EEE
Q 014934 318 WNQHST---------------QPVLKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH--------LSC 373 (415)
Q Consensus 318 wd~~~~---------------~~~~~~~~-h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~--------~~~ 373 (415)
||.... +++..+.+ |...|.+++|+|++. .|++++ .|+.|++|+...+.. ...
T Consensus 221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~~ 297 (345)
T 3fm0_A 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATAC--GDDAIRVFQEDPNSDPQQPTFSLTAH 297 (345)
T ss_dssp EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEE--TTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEe--CCCeEEEEEeCCCCCcceeeEEEEee
Confidence 996321 23444554 889999999999987 556665 699999999876431 111
Q ss_pred e--eCCCCEEEEEECCCCC-eEEEEEecCCCcEEEEECCCCccc
Q 014934 374 M--DTGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 374 ~--~~~~~V~~l~~s~~~~-~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
. .|...|.+++|+|++. .|++ |+.||.|++|++.+.+++
T Consensus 298 ~~~~h~~~V~~v~~~p~~~~~laS--~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 298 LHQAHSQDVNCVAWNPKEPGLLAS--CSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp ETTSSSSCEEEEEECSSSTTEEEE--EETTSCEEEEEECC----
T ss_pred ecccccCcEeEeEEeCCCceEEEE--cCCCCcEEEEEecCCCCc
Confidence 1 3677899999999985 6777 779999999999987654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=268.42 Aligned_cols=237 Identities=22% Similarity=0.394 Sum_probs=188.2
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCC-------CeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSS-------KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA 237 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~-------~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~ 237 (415)
.-.|++++|+| +++|+++ .|+.|+||+.... +....+. +|...|.+++|+|+|++||+|+.||.|++||+
T Consensus 58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence 34699999999 7777776 5899999998542 2333333 78999999999999999999999999999999
Q ss_pred CC----CeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC-ccEEEeccccCCeEEEEEeCC--CCEEEE
Q 014934 238 SR----CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSYD--NRELAS 308 (415)
Q Consensus 238 ~~----~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spd--g~~las 308 (415)
.. .+++..+.+|...|.+++|+ +.+|++|+.|++|++||++... .++..+.+|...|.+++|+|+ +.+|++
T Consensus 137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 216 (330)
T 2hes_X 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS 216 (330)
T ss_dssp CTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEE
T ss_pred cCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEE
Confidence 43 35678889999999999998 4799999999999999987653 357788999999999999998 779999
Q ss_pred EeCCCcEEEEECCCC--------ceeEEecc-CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc--EEEEe--e
Q 014934 309 GGNDNRLFVWNQHST--------QPVLKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT--HLSCM--D 375 (415)
Q Consensus 309 g~~dg~I~iwd~~~~--------~~~~~~~~-h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~--~~~~~--~ 375 (415)
|+.|+.|+|||+..+ .....+.. |...|.+++|++++ +|++++ .|+.|++||..+++ .+... .
T Consensus 217 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~--~dg~v~iw~~~~~~~~~~~~~~~~ 292 (330)
T 2hes_X 217 GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVG--ADGVLAVYEEVDGEWKVFAKRALC 292 (330)
T ss_dssp EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEE--TTSCEEEEEEETTEEEEEEEESCT
T ss_pred EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEe--CCCEEEEEEcCCCceEEEeccccc
Confidence 999999999998754 34445554 99999999999764 677776 89999999998874 33332 2
Q ss_pred CCC-CEEEEEECC--CCCeEEEEEecCCCcEEEEECCC
Q 014934 376 TGS-QVCNLVWSK--NVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 376 ~~~-~V~~l~~s~--~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+.. .|.+++|+| +++.|++ |+.||.|+||++..
T Consensus 293 h~~~~v~~v~~~~~~~~~~las--~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 293 HGVYEINVVKWLELNGKTILAT--GGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTSCEEEEEEC-----CCEEE--EETTSEEEEEEC--
T ss_pred cccceEEEEEEecCCCceEEEE--ecCCCcEEEEEecc
Confidence 444 799999999 6888888 78999999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-33 Score=267.69 Aligned_cols=234 Identities=19% Similarity=0.371 Sum_probs=195.5
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
..|++++|+| +.+|+++ .|+.|++||+.+++....+. +|...|.+++|+|++++|++|+.||.|++||+... ....
T Consensus 77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~ 154 (343)
T 2xzm_R 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFS 154 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceee
Confidence 4699999999 6666666 68999999999999887776 89999999999999999999999999999999843 3333
Q ss_pred ec---CCCccEEEEEeeC------------CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe
Q 014934 246 ME---GHRLRVGALAWSS------------SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG 310 (415)
Q Consensus 246 l~---~h~~~V~~l~~~~------------~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~ 310 (415)
.. +|...|.+++|++ .+|++++.||.|++||... .....+.+|...|.+++|+|+|++||+|+
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~sgs 232 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSISPNGKYIATGG 232 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccceEEEECCCCCEEEEEc
Confidence 33 7899999999984 4799999999999999532 35677889999999999999999999999
Q ss_pred CCCcEEEEECCC-CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE--Eee------------
Q 014934 311 NDNRLFVWNQHS-TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS--CMD------------ 375 (415)
Q Consensus 311 ~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~--~~~------------ 375 (415)
.|+.|+|||+.+ ..+...+ .+...|.+++|+|++. +++++ .|+.|++||+.+++... .+.
T Consensus 233 ~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~-~la~~---~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T 2xzm_R 233 KDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQ-WVAVG---TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG 307 (343)
T ss_dssp TTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSC-EEEEE---ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred CCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCC-EEEEE---CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence 999999999954 4445554 4566799999999986 66655 48899999998876533 332
Q ss_pred CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 376 TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 376 ~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+...|.+++|+|+|++|++ |+.||.|++|+++++.
T Consensus 308 ~~~~v~~~~~sp~g~~l~s--g~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 308 KNPQCTSLAWNALGKKLFA--GFTDGVIRTFSFETSA 342 (343)
T ss_dssp SCCCEEEEEECSSSCCEEE--EETTSEEEEEEEEEEE
T ss_pred CCCceEEEEECCCCCeEEE--ecCCceEEEEEEEccC
Confidence 4567999999999999999 7899999999987643
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=272.65 Aligned_cols=238 Identities=21% Similarity=0.364 Sum_probs=198.4
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCe--EEeEecCCCCCeEEEEEcC--CCCeEEEEECCCcEEEEECCCC
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKV--TKLCDLGIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~--~~~~~~~~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~~~ 240 (415)
.-.|++++|++ +++||++ .|+.|+|||+.++.. ...+. +|.+.|.+++|++ ++++|++|+.||+|+|||+.++
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~ 91 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG 91 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC
Confidence 34699999999 6777776 589999999988753 23333 8999999999986 4899999999999999999876
Q ss_pred --eeeEEecCCCccEEEEEeeC----CEEEEEeCCCcEEEEECCCCCcc--EEEeccccCCeEEEEEeCC----------
Q 014934 241 --KRVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQEDF--VSKLSGHKSEVCGLKWSYD---------- 302 (415)
Q Consensus 241 --~~~~~l~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~spd---------- 302 (415)
+.+..+.+|...|.+++|++ .+|++|+.|+.|++||++..... ...+.+|...|.+++|+|+
T Consensus 92 ~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 171 (316)
T 3bg1_A 92 TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHP 171 (316)
T ss_dssp CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------C
T ss_pred cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccc
Confidence 46677889999999999985 48999999999999999876422 3455689999999999997
Q ss_pred -------CCEEEEEeCCCcEEEEECCCC---ceeEEeccCCCcEEEEEEcCCC---CcEEEEEcCCCCCeEEEEECCCC-
Q 014934 303 -------NRELASGGNDNRLFVWNQHST---QPVLKYCEHTAAVKAIAWSPHL---HGLLASGGGTADRCIRFWNTTTN- 368 (415)
Q Consensus 303 -------g~~lasg~~dg~I~iwd~~~~---~~~~~~~~h~~~V~~l~~sp~~---~~llasggg~~d~~I~iwd~~t~- 368 (415)
+++||+|+.|+.|+|||++.. +++..+.+|...|.+++|+|++ ..+|++++ .|+.|++||+.+.
T Consensus 172 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s--~D~~v~iw~~~~~~ 249 (316)
T 3bg1_A 172 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS--QDGRVFIWTCDDAS 249 (316)
T ss_dssp CSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE--TTCEEEEEECSSTT
T ss_pred cccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc--CCCeEEEEEccCcc
Confidence 478999999999999999755 4667788999999999999986 24888887 8999999999763
Q ss_pred --c-EEEE-eeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 369 --T-HLSC-MDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 369 --~-~~~~-~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+ .... ..+...|.+++|+|+++.|++ ++.|+.|+||+..
T Consensus 250 ~~~~~~~~~~~~~~~v~~v~~sp~g~~las--~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 250 SNTWSPKLLHKFNDVVWHVSWSITANILAV--SGGDNKVTLWKES 292 (316)
T ss_dssp CCCCBCCEEEECSSCEEEEEECTTTCCEEE--EESSSCEEEEEEC
T ss_pred ccchhhhhhhcCCCcEEEEEEcCCCCEEEE--EcCCCeEEEEEEC
Confidence 1 1111 236788999999999999998 7789999999976
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=275.52 Aligned_cols=241 Identities=16% Similarity=0.268 Sum_probs=196.3
Q ss_pred CcceeEeecCC-CcEEEEEc-------CCeEEEEECCCCCeEEe---EecCCCCCeEEEEEcCCCCeEEEEECCCcEEEE
Q 014934 167 DFYLNLVDWSS-HNVLAVGL-------GNCVYLWNACSSKVTKL---CDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIW 235 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~-------d~~V~iwd~~~~~~~~~---~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iw 235 (415)
+-.|++++|+| +.+|++++ |+.|++|+..++..... ...+|...|++++|+|++.+ ++++.||.|+||
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lW 120 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELW 120 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEe
Confidence 44699999999 88888885 56899999877654222 12267889999999999864 567889999999
Q ss_pred ECCCCeeeE----EecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCC-EEEE
Q 014934 236 DASRCKRVR----TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR-ELAS 308 (415)
Q Consensus 236 d~~~~~~~~----~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~las 308 (415)
|+.+++... ...+|...|.+++|+ +++|++|+.|+.|++||++++. .+..+.+|...|.+++|+|++. +|++
T Consensus 121 d~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~~~~s 199 (357)
T 4g56_B 121 EILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-VLKSYNAHSSEVNCVAACPGKDTIFLS 199 (357)
T ss_dssp --------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTCSSCEEE
T ss_pred eccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCceeee
Confidence 998876443 345799999999998 4799999999999999999886 6788899999999999999875 7899
Q ss_pred EeCCCcEEEEECCCCceeEEec--cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEE
Q 014934 309 GGNDNRLFVWNQHSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVW 385 (415)
Q Consensus 309 g~~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~ 385 (415)
++.|+.|+|||+++++++..+. .|...+.+++|+|++..+|++|+ .|+.|++||+++++++..+. +...|.+++|
T Consensus 200 ~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~ 277 (357)
T 4g56_B 200 CGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD--ETGNVSLVNIKNPDSAQTSAVHSQNITGLAY 277 (357)
T ss_dssp EETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE--SSSCEEEEESSCGGGCEEECCCSSCEEEEEE
T ss_pred eccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee--cccceeEEECCCCcEeEEEeccceeEEEEEE
Confidence 9999999999999988766543 57788999999999888999987 89999999999999888876 6678999999
Q ss_pred CCCCC-eEEEEEecCCCcEEEEECCCCcc
Q 014934 386 SKNVN-ELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 386 s~~~~-~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+|++. +|++ |+.|+.|+|||+.+.+.
T Consensus 278 sp~~~~~las--gs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 278 SYHSSPFLAS--ISEDCTVAVLDADFSEV 304 (357)
T ss_dssp CSSSSCCEEE--EETTSCEEEECTTSCEE
T ss_pred cCCCCCEEEE--EeCCCEEEEEECCCCcE
Confidence 99985 5666 77899999999987653
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=260.18 Aligned_cols=241 Identities=21% Similarity=0.265 Sum_probs=211.4
Q ss_pred CcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeE---e-cCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLC---D-LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~---~-~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
.-.|.+++|+| +.+|+++.++.|++|++.+++..... . .+|...|.+++|+|++++|++|+.||.|++||+.+++
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 130 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp SSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred CCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC
Confidence 44688999999 78888888999999999886532222 1 2678999999999999999999999999999998876
Q ss_pred --eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 014934 242 --RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (415)
Q Consensus 242 --~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~i 317 (415)
....+..|...|.+++|+ +++|++++.||.|++||+++.. ....+..|...|.+++|+|++++|++++.|+.|++
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~ 209 (337)
T 1gxr_A 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209 (337)
T ss_dssp -EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eeeeeecccCceEEEEECCCCCEEEEEecCCcEEE
Confidence 667788899999999998 4799999999999999999876 57788899999999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEe
Q 014934 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g 397 (415)
||+++++.+..+ .|...+.+++|+|++. ++++++ .|+.|++||+.+++......+...|.+++|+|++++|++ +
T Consensus 210 ~d~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~--~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~ 283 (337)
T 1gxr_A 210 WDLREGRQLQQH-DFTSQIFSLGYCPTGE-WLAVGM--ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVS--T 283 (337)
T ss_dssp EETTTTEEEEEE-ECSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEE--E
T ss_pred EECCCCceEeee-cCCCceEEEEECCCCC-EEEEEc--CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEE--e
Confidence 999999888877 5788999999999997 555555 799999999999988766668889999999999999998 7
Q ss_pred cCCCcEEEEECCCCccc
Q 014934 398 YSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 398 ~~dg~I~vw~~~s~~~l 414 (415)
+.||.|++|++.+.+.+
T Consensus 284 ~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 284 GKDNLLNAWRTPYGASI 300 (337)
T ss_dssp ETTSEEEEEETTTCCEE
T ss_pred cCCCcEEEEECCCCeEE
Confidence 78999999999987653
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=262.75 Aligned_cols=235 Identities=20% Similarity=0.314 Sum_probs=198.1
Q ss_pred cceeEeec-----CC--CcEEEEE-cCCeEEEEECCCCC-------eEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcE
Q 014934 168 FYLNLVDW-----SS--HNVLAVG-LGNCVYLWNACSSK-------VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKV 232 (415)
Q Consensus 168 ~~i~~l~w-----s~--~~~la~~-~d~~V~iwd~~~~~-------~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V 232 (415)
-.|++++| ++ +.+|++| .|+.|++||+.+++ ....+. +|...|.+++|+|++.+|++|+.||+|
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~~l~s~s~D~~v 100 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALSQENCFAISSSWDKTL 100 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEECSSTTEEEEEETTSEE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc-cCCCceEEEEECCCCCEEEEEcCCCcE
Confidence 36889998 54 5566666 68999999987543 223333 899999999999999999999999999
Q ss_pred EEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec---cccCCeEEEEEeCCC----
Q 014934 233 QIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS---GHKSEVCGLKWSYDN---- 303 (415)
Q Consensus 233 ~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~spdg---- 303 (415)
++||+.+++.+..+.+|...|.+++|+ +.+|++|+.|++|++||+.... ..... +|...|.+++|+|++
T Consensus 101 ~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~ 178 (343)
T 2xzm_R 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC--KFSSAEKENHSDWVSCVRYSPIMKSAN 178 (343)
T ss_dssp EEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE--EEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred EEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc--eeeeecccCCCceeeeeeecccccccc
Confidence 999999999999999999999999998 5799999999999999998432 22332 788999999999987
Q ss_pred ------CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC-CCCcEEEEeeC
Q 014934 304 ------RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT-TTNTHLSCMDT 376 (415)
Q Consensus 304 ------~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~-~t~~~~~~~~~ 376 (415)
.+|++|+.|+.|++|| ...+....+.+|...|.+++|+|+++ +|++++ .|+.|++||+ ........+.+
T Consensus 179 ~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~sgs--~dg~v~iwd~~~~~~~~~~~~~ 254 (343)
T 2xzm_R 179 KVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGK-YIATGG--KDKKLLIWDILNLTYPQREFDA 254 (343)
T ss_dssp CCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTCEEEEEESSCCSSCSEEEEC
T ss_pred ccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCC-EEEEEc--CCCeEEEEECCCCcccceeecC
Confidence 7999999999999999 45667778889999999999999997 677776 8999999999 44555666667
Q ss_pred CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 377 ~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+..|.+++|+|++.++++ | .|+.|++|++.+.+
T Consensus 255 ~~~v~~v~~sp~~~~la~--~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 255 GSTINQIAFNPKLQWVAV--G-TDQGVKIFNLMTQS 287 (343)
T ss_dssp SSCEEEEEECSSSCEEEE--E-ESSCEEEEESSSCC
T ss_pred CCcEEEEEECCCCCEEEE--E-CCCCEEEEEeCCCC
Confidence 788999999999988765 4 57889999997654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=252.47 Aligned_cols=233 Identities=17% Similarity=0.243 Sum_probs=205.3
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCe--EEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKV--TKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~--~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
...+.+++|+| +++|+++ .++.|++|++.+++. ...+. .|...|.+++|+|++++|++|+.||.|++||+.+++.
T Consensus 97 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~ 175 (337)
T 1gxr_A 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL 175 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc-cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Confidence 45699999999 6666666 579999999998873 33333 7788999999999999999999999999999999999
Q ss_pred eEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
+..+..|...|.+++|+ +.+|++++.||.|++||++... ....+ .|...+.+++|+|++++|++++.|+.|++||+
T Consensus 176 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc-eEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 99999999999999998 5799999999999999999876 34443 47789999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCC
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
.+++. ..+..|...|.+++|+|+++ +|++++ .|+.|++||+.+++.+....+...|.+++|+|++++|++ ++.|
T Consensus 254 ~~~~~-~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~d 327 (337)
T 1gxr_A 254 NKPDK-YQLHLHESCVLSLKFAYCGK-WFVSTG--KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVT--GSGD 327 (337)
T ss_dssp TSSCE-EEECCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEE--EETT
T ss_pred CCCCe-EEEcCCccceeEEEECCCCC-EEEEec--CCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEE--ecCC
Confidence 98865 46678999999999999988 666665 799999999999999988888999999999999999998 7789
Q ss_pred CcEEEEEC
Q 014934 401 NQIIVWRY 408 (415)
Q Consensus 401 g~I~vw~~ 408 (415)
|.|++|++
T Consensus 328 g~i~iw~~ 335 (337)
T 1gxr_A 328 KKATVYEV 335 (337)
T ss_dssp SCEEEEEE
T ss_pred CeEEEEEE
Confidence 99999996
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=257.73 Aligned_cols=241 Identities=17% Similarity=0.274 Sum_probs=202.8
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCC----eEEeEecCCCCCeEEEEEcC--CCCeEEEEECCCcEEEEECCC
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK----VTKLCDLGIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~----~~~~~~~~~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~~ 239 (415)
-.|++++|+| +++|+++ .|+.|++|++.++. ....+. +|...|++++|+| ++++|++|+.||.|++||+.+
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence 3699999999 6677776 57999999998763 333333 7899999999999 699999999999999999987
Q ss_pred C---------eeeEEecCCCccEEEEEee----CCEEEEEeCCCcEEEEECCCCCccEE------------EeccccCCe
Q 014934 240 C---------KRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQEDFVS------------KLSGHKSEV 294 (415)
Q Consensus 240 ~---------~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~------------~~~~h~~~V 294 (415)
+ +.+..+..|...|.+++|+ +.+|++++.||.|++||++....... ....|...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (351)
T 3f3f_A 91 DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD 170 (351)
T ss_dssp TSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCC
T ss_pred CcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccce
Confidence 6 6678888999999999998 45899999999999999987652110 012678899
Q ss_pred EEEEEeCC---CCEEEEEeCCCcEEEEECCCCce--eEEeccCCCcEEEEEEcCCCC---cEEEEEcCCCCCeEEEEECC
Q 014934 295 CGLKWSYD---NRELASGGNDNRLFVWNQHSTQP--VLKYCEHTAAVKAIAWSPHLH---GLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 295 ~~l~~spd---g~~lasg~~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~sp~~~---~llasggg~~d~~I~iwd~~ 366 (415)
.+++|+|+ +.+|++++.|+.+.+|+...++. +..+.+|...|.+++|+|++. .+|++++ .|+.|++||+.
T Consensus 171 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~--~dg~i~iwd~~ 248 (351)
T 3f3f_A 171 FCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC--KDGRIRIFKIT 248 (351)
T ss_dssp EEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE--TTSCEEEEEEE
T ss_pred eEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc--CCCeEEEEeCC
Confidence 99999997 99999999999998888887765 677889999999999999983 4788887 89999999998
Q ss_pred CC----------------------------------------------cEEEEee-CCCCEEEEEECCCCCeEEEEEecC
Q 014934 367 TN----------------------------------------------THLSCMD-TGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 367 t~----------------------------------------------~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
++ +.+..+. +...|++++|+|++++|++ |+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s--~~~ 326 (351)
T 3f3f_A 249 EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS--AGD 326 (351)
T ss_dssp ECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE--EET
T ss_pred CCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE--ecC
Confidence 75 3444444 6678999999999999999 779
Q ss_pred CCcEEEEECCCCcc
Q 014934 400 QNQIIVWRYPTMSK 413 (415)
Q Consensus 400 dg~I~vw~~~s~~~ 413 (415)
||.|+||++.+.++
T Consensus 327 dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 327 DGKVRLWKATYSNE 340 (351)
T ss_dssp TSCEEEEEECTTSC
T ss_pred CCcEEEEecCcCcc
Confidence 99999999997654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-32 Score=284.28 Aligned_cols=239 Identities=21% Similarity=0.336 Sum_probs=207.9
Q ss_pred CcceeEeecCC--CcEEEEE-cCCeEEEEECCCCC-----eEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC
Q 014934 167 DFYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSK-----VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 167 ~~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~-----~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~ 238 (415)
.-.|++++|++ .++|++| .|+.|++|++.+.. ....+. +|...|.+++|+|+|++|++|+.||.|+|||+.
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 34699999998 3566665 68999999987643 223333 899999999999999999999999999999999
Q ss_pred CCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEE---eccccCCeEEEEEeCCC--CEEEEEeC
Q 014934 239 RCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSK---LSGHKSEVCGLKWSYDN--RELASGGN 311 (415)
Q Consensus 239 ~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~h~~~V~~l~~spdg--~~lasg~~ 311 (415)
+++.+..+.+|...|.+++|+ +.+|++|+.|++|++||+..... ... ..+|...|.+++|+|++ ..|++|+.
T Consensus 461 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 539 (694)
T 3dm0_A 461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW 539 (694)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC
Confidence 999999999999999999998 57999999999999999875532 222 14688899999999987 68999999
Q ss_pred CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCe
Q 014934 312 DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNE 391 (415)
Q Consensus 312 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~ 391 (415)
|+.|+|||+++++....+.+|...|.+++|+|++. +|++++ .|+.|++||+.+++.+..+.....|.+++|+|++..
T Consensus 540 d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~-~l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~ 616 (694)
T 3dm0_A 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASGG--KDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYW 616 (694)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSE
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC-EEEEEe--CCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcE
Confidence 99999999999999999999999999999999987 777777 899999999999999998888889999999999988
Q ss_pred EEEEEecCCCcEEEEECCCCcc
Q 014934 392 LVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
|++ + .++.|+|||+.+.+.
T Consensus 617 l~~--~-~~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 617 LCA--A-TEHGIKIWDLESKSI 635 (694)
T ss_dssp EEE--E-ETTEEEEEETTTTEE
T ss_pred EEE--E-cCCCEEEEECCCCCC
Confidence 877 4 466799999987653
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=264.37 Aligned_cols=238 Identities=21% Similarity=0.364 Sum_probs=201.9
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCC--CeEEeEecCCCCCeEEEEEcCC--CCeEEEEECCCcEEEEECCCCe
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSS--KVTKLCDLGIDDSVCSVGWANR--NTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~--~~~~~~~~~~~~~V~~v~~sp~--g~~la~g~~dg~V~iwd~~~~~ 241 (415)
-.|++++|+| +++|+++ .|+.|++|++..+ +....+. +|...|++++|+++ +++|++|+.||.|++||+.+++
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 90 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR 90 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc
Confidence 3599999999 7777777 5899999999844 4444443 78999999999987 9999999999999999999887
Q ss_pred --eeEEecCCCccEEEEEeeC----CEEEEEeCCCcEEEEECCCCCc-cEEEeccccCCeEEEEEeC-------------
Q 014934 242 --RVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQED-FVSKLSGHKSEVCGLKWSY------------- 301 (415)
Q Consensus 242 --~~~~l~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~sp------------- 301 (415)
.+..+..|...|.+++|++ .+|++++.||.|++||++.... ....+.+|...|.+++|+|
T Consensus 91 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 170 (379)
T 3jrp_A 91 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 170 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------C
T ss_pred eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCC
Confidence 7788889999999999984 5899999999999999988742 3456778999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc----eeEEeccCCCcEEEEEEcCCC--CcEEEEEcCCCCCeEEEEECCCCc---EEE
Q 014934 302 DNRELASGGNDNRLFVWNQHSTQ----PVLKYCEHTAAVKAIAWSPHL--HGLLASGGGTADRCIRFWNTTTNT---HLS 372 (415)
Q Consensus 302 dg~~lasg~~dg~I~iwd~~~~~----~~~~~~~h~~~V~~l~~sp~~--~~llasggg~~d~~I~iwd~~t~~---~~~ 372 (415)
++.+|++|+.|+.|++||++++. .+..+.+|...|.+++|+|++ ..+|++++ .|+.|++||+.++. ...
T Consensus 171 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~ 248 (379)
T 3jrp_A 171 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNEQGPWKKT 248 (379)
T ss_dssp TTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCEEE
T ss_pred CCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe--CCCEEEEEeCCCCCccceee
Confidence 69999999999999999998764 446777899999999999994 34777776 89999999999874 222
Q ss_pred Eee---CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 373 CMD---TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 373 ~~~---~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
.+. +...|.+++|+|++++|++ ++.||.|++|++..
T Consensus 249 ~~~~~~~~~~v~~~~~s~~g~~l~~--~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 249 LLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKENL 287 (379)
T ss_dssp ESSSSCCSSCEEEEEECSSSCCEEE--EESSSSEEEEEEEE
T ss_pred eeccccCCCcEEEEEEcCCCCEEEE--ecCCCcEEEEeCCC
Confidence 222 5678999999999999998 66899999999874
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-32 Score=275.58 Aligned_cols=228 Identities=25% Similarity=0.449 Sum_probs=201.9
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
..+.+++|+| +..|+++ .++.|++|+. +++....+. +|...|++++|+|+|++|++|+.||.|++||. +++.+..
T Consensus 345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~ 421 (577)
T 2ymu_A 345 SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 421 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEE
Confidence 4588999999 6777777 5789999996 456666555 78899999999999999999999999999995 5678888
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+.+|...|.+++|+ +.+|++++.|+.|++||.... .+..+.+|...|.+++|+|++++||+++.|+.|+|||. ++
T Consensus 422 ~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~--~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~ 498 (577)
T 2ymu_A 422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 498 (577)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC--EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TS
T ss_pred ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC
Confidence 99999999999998 479999999999999997532 57788899999999999999999999999999999995 67
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCc
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
+.+..+.+|...|++++|+|+++ +|++++ .|+.|++||. +++++..+. |...|.+++|+|++++|++ ++.|+.
T Consensus 499 ~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~--~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s--~~~D~~ 572 (577)
T 2ymu_A 499 QLLQTLTGHSSSVRGVAFSPDGQ-TIASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIAS--ASSDKT 572 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-CEEEEE--TTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEE--EETTSC
T ss_pred CEEEEEeCCCCCEEEEEEcCCCC-EEEEEE--CcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEE--EeCCCE
Confidence 88899999999999999999998 566666 7999999996 677777775 7789999999999999998 678999
Q ss_pred EEEEE
Q 014934 403 IIVWR 407 (415)
Q Consensus 403 I~vw~ 407 (415)
|++||
T Consensus 573 i~~Wd 577 (577)
T 2ymu_A 573 VKLWN 577 (577)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99997
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=254.39 Aligned_cols=255 Identities=15% Similarity=0.189 Sum_probs=218.5
Q ss_pred CCCCCCceeccCCCCCCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE
Q 014934 150 KVPRSPYKILDAPALQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT 227 (415)
Q Consensus 150 ~i~~~p~~~ld~~~l~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~ 227 (415)
.......+.+.... ..-.|++++|+| +++|+++ .++.|++||+.+++....+. +|...|.+++|+|++++|++++
T Consensus 17 ~~~G~~~~~~~l~~--h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~ 93 (369)
T 3zwl_B 17 YFQGSHMKAIKLTG--HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-GHTGTIWSIDVDCFTKYCVTGS 93 (369)
T ss_dssp CSSCCSEEEEEEEC--CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred EEeccccccEEEEE--eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh-hcCCcEEEEEEcCCCCEEEEEe
Confidence 33444444433332 234699999999 6777776 58899999999999888775 7899999999999999999999
Q ss_pred CCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCC-----CcEEEEECCCCCc----------cEEEeccc
Q 014934 228 SHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRD-----KSILQRDIRAQED----------FVSKLSGH 290 (415)
Q Consensus 228 ~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d-----g~I~iwd~~~~~~----------~~~~~~~h 290 (415)
.||.|++||+.+++.+..+. |...|.+++|+ +.+|++++.+ +.|.+||++.... ....+..|
T Consensus 94 ~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 94 ADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp TTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred CCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 99999999999999988888 88999999998 5799999999 9999999986542 23445556
Q ss_pred cC--CeEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 291 KS--EVCGLKWSYDNRELASGGNDNRLFVWNQHS-TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 291 ~~--~V~~l~~spdg~~lasg~~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t 367 (415)
.. .+.+++|+|++++|++|+.||.|++||+++ .+.+..+..|...|.+++|+|++. +|++++ .|+.|++||+.+
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~i~v~d~~~ 249 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT-YFITSS--RDTNSFLVDVST 249 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEETTT
T ss_pred cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC-EEEEec--CCceEEEEECCC
Confidence 66 899999999999999999999999999998 788889999999999999999987 556665 799999999999
Q ss_pred CcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCC--------------cEEEEECCCCcc
Q 014934 368 NTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN--------------QIIVWRYPTMSK 413 (415)
Q Consensus 368 ~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg--------------~I~vw~~~s~~~ 413 (415)
++.+..+.+...+..++|+|+++.+++ +..++ .|++|++.+.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 307 (369)
T 3zwl_B 250 LQVLKKYETDCPLNTAVITPLKEFIIL--GGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307 (369)
T ss_dssp CCEEEEEECSSCEEEEEECSSSSEEEE--EECCC-------------CEEEEEETTTCCE
T ss_pred CceeeeecCCCCceeEEecCCCceEEE--eecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence 999999999999999999999999999 55566 899999987764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-32 Score=260.04 Aligned_cols=236 Identities=12% Similarity=0.193 Sum_probs=206.2
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCC--eEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK--VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~--~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
..|.+++|+| +++|+++ .++.|++|+..+++ ....+. +|...|++++|+|++++|++|+.||.|++||+.+++..
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 87 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 87 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee
Confidence 3588999999 7788888 68999999999887 555554 78999999999999999999999999999999888754
Q ss_pred EE--ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc---cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 244 RT--MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED---FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 244 ~~--l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
.. +..|...|.+++|+ +.+|++|+.|+.|++||++.... ......+|...|.+++|+|++++|++|+.|+.|+
T Consensus 88 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 167 (372)
T 1k8k_C 88 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 167 (372)
T ss_dssp EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEE
Confidence 44 46799999999998 57999999999999999988763 2333467899999999999999999999999999
Q ss_pred EEEC------------------CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CC
Q 014934 317 VWNQ------------------HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TG 377 (415)
Q Consensus 317 iwd~------------------~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~ 377 (415)
+||+ ..++.+..+..|...|.+++|+|++. +|++++ .|+.|++||+.+++++..+. +.
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 168 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVS--HDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEE--TTTEEEEEEGGGTTEEEEEECSS
T ss_pred EEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCceeEEEccCC
Confidence 9995 46788889989999999999999987 666666 79999999999999998887 45
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
..|.+++|+|++.+|++ | .|+.|++|++.+
T Consensus 245 ~~v~~~~~~~~~~~l~~--~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 245 LPLLAVTFITESSLVAA--G-HDCFPVLFTYDS 274 (372)
T ss_dssp CCEEEEEEEETTEEEEE--E-TTSSCEEEEEET
T ss_pred CCeEEEEEecCCCEEEE--E-eCCeEEEEEccC
Confidence 68999999999998877 6 799999999977
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=265.74 Aligned_cols=239 Identities=14% Similarity=0.185 Sum_probs=207.7
Q ss_pred CcceeEeecCCCcEEEEEcCCeEEEEECCCCC------eEEeEecCCCCCeEEEEEcCC----C---CeEEEEECCCcEE
Q 014934 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSK------VTKLCDLGIDDSVCSVGWANR----N---THLAVGTSHGKVQ 233 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~------~~~~~~~~~~~~V~~v~~sp~----g---~~la~g~~dg~V~ 233 (415)
.-.|++++|+|..+++++.|+.|++|++.+++ ....+. +|...|++++|+|+ | ++|++|+.||.|+
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~ 94 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL 94 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCCCCEE
Confidence 34699999999444445578999999999988 455554 78999999999999 9 9999999999999
Q ss_pred EEECCCCee-----eEEecCC-----CccEEEEEee----C--CE-EEEEeCCCcEEEEECCC------CCccEE-----
Q 014934 234 IWDASRCKR-----VRTMEGH-----RLRVGALAWS----S--SL-LSSGSRDKSILQRDIRA------QEDFVS----- 285 (415)
Q Consensus 234 iwd~~~~~~-----~~~l~~h-----~~~V~~l~~~----~--~~-l~sgs~dg~I~iwd~~~------~~~~~~----- 285 (415)
+||+.+++. +..+..| ...|.+++|+ + .+ |++|+.||.|++||++. ... +.
T Consensus 95 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~ 173 (397)
T 1sq9_A 95 FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPTL 173 (397)
T ss_dssp EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCEE
T ss_pred EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCcc
Confidence 999988876 8888888 5899999999 4 67 99999999999999988 442 33
Q ss_pred Ee-------ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEecc---C---CCcEEEEEEcCCCCcEEEEE
Q 014934 286 KL-------SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE---H---TAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 286 ~~-------~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~---h---~~~V~~l~~sp~~~~llasg 352 (415)
.+ ..|...|.+++|+|++ +|++|+.|+.|++||+++++++..+.. | ...|.+++|+|++. +|+++
T Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~ 251 (397)
T 1sq9_A 174 ELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIA 251 (397)
T ss_dssp EEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEE
T ss_pred eeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC-EEEEE
Confidence 45 4588999999999999 999999999999999999999999988 9 99999999999987 56666
Q ss_pred cCCCC---CeEEEEECCCCcEEEEee--------------CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 353 GGTAD---RCIRFWNTTTNTHLSCMD--------------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 353 gg~~d---~~I~iwd~~t~~~~~~~~--------------~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+ .| +.|++||+.+++.+..+. +...|.+++|+|++++|++ |+.||.|++||+.+++.
T Consensus 252 ~--~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 252 H--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS--AGWDGKLRFWDVKTKER 325 (397)
T ss_dssp E--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE--EETTSEEEEEETTTTEE
T ss_pred e--cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE--EeCCCeEEEEEcCCCce
Confidence 5 68 999999999999988886 5788999999999999998 77899999999988764
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=278.07 Aligned_cols=238 Identities=18% Similarity=0.247 Sum_probs=199.8
Q ss_pred CcceeEeecCC-Cc-EEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 167 DFYLNLVDWSS-HN-VLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 167 ~~~i~~l~ws~-~~-~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
.-.|++++|+| +. .|+++ .|+.|++||..+++....+. +|...|.+++|+|+|++||+|+.||+|+|||+.+++.+
T Consensus 147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 225 (611)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec-cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEe
Confidence 34699999999 33 35554 68999999998888777665 89999999999999999999999999999999999988
Q ss_pred EEec-------CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc--------------------------------
Q 014934 244 RTME-------GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED-------------------------------- 282 (415)
Q Consensus 244 ~~l~-------~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~-------------------------------- 282 (415)
..+. +|...|.+++|+ +.+|++|+.|++|++||++++..
T Consensus 226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~ 305 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 305 (611)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCC
T ss_pred eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCc
Confidence 8884 799999999998 57999999999999999986542
Q ss_pred ----------cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEe-c---------------------
Q 014934 283 ----------FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY-C--------------------- 330 (415)
Q Consensus 283 ----------~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~-~--------------------- 330 (415)
....+.+|...|.+++|+|+|++|++|+.|+.|++||+.+++....+ .
T Consensus 306 i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s 385 (611)
T 1nr0_A 306 INFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 385 (611)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred EEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEE
Confidence 12344689999999999999999999999999999998876432221 0
Q ss_pred ------------------------------------------------------------cCCCcEEEEEEcCCCCcEEE
Q 014934 331 ------------------------------------------------------------EHTAAVKAIAWSPHLHGLLA 350 (415)
Q Consensus 331 ------------------------------------------------------------~h~~~V~~l~~sp~~~~lla 350 (415)
.|...+.+++|+|+++ +|+
T Consensus 386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~-~la 464 (611)
T 1nr0_A 386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVA 464 (611)
T ss_dssp TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC-EEE
T ss_pred cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC-EEE
Confidence 1234567899999987 777
Q ss_pred EEcCCCCCeEEEEECCCCcE--EEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 351 SGGGTADRCIRFWNTTTNTH--LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 351 sggg~~d~~I~iwd~~t~~~--~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+|+ .|+.|++||+.++.. +....+...|.+++|+|+|++|++ ++.|+.|++|++.+
T Consensus 465 sgs--~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las--~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 465 VGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA--TDQSRKVIPYSVAN 522 (611)
T ss_dssp EEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEE--EETTSCEEEEEGGG
T ss_pred EeC--CCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEE--EcCCCCEEEEEcCC
Confidence 777 899999999987653 344568889999999999999999 77899999999976
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=271.29 Aligned_cols=242 Identities=10% Similarity=0.231 Sum_probs=199.0
Q ss_pred CCCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCC-----------eEEeEecCCC------------CCeEEEEEcC
Q 014934 164 LQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK-----------VTKLCDLGID------------DSVCSVGWAN 218 (415)
Q Consensus 164 l~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~-----------~~~~~~~~~~------------~~V~~v~~sp 218 (415)
+.+.-.|.+++|+| +++||+| .|+.|+||++.+++ +...+. +|. +.|++++|+|
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcC
Confidence 44456799999999 7788877 58999999998876 344454 787 8899999999
Q ss_pred CC--CeEEEEECCCcEEEEECCCCeee---------------------------------------EE-ecCCCccEEEE
Q 014934 219 RN--THLAVGTSHGKVQIWDASRCKRV---------------------------------------RT-MEGHRLRVGAL 256 (415)
Q Consensus 219 ~g--~~la~g~~dg~V~iwd~~~~~~~---------------------------------------~~-l~~h~~~V~~l 256 (415)
++ .+|++|+.||.|++||+.+++.. .. ..+|...|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 98 79999999999999998764432 12 36899999999
Q ss_pred Eee--CCEEEEEeCCCcEEEEECCCCCccEE-------EeccccCCeEEEEEeCCC-CEEEEEeCCCcEEEEECCCCce-
Q 014934 257 AWS--SSLLSSGSRDKSILQRDIRAQEDFVS-------KLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQP- 325 (415)
Q Consensus 257 ~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~-------~~~~h~~~V~~l~~spdg-~~lasg~~dg~I~iwd~~~~~~- 325 (415)
+|+ +.+|++| .|+.|++||++....... .+.+|...|.+++|+|++ ++|++|+.||.|++||+++++.
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 998 4788988 899999999985443344 256899999999999998 9999999999999999999886
Q ss_pred ---eEEeccCCC------------cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC-CcEEEEeeCCCC----------
Q 014934 326 ---VLKYCEHTA------------AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-NTHLSCMDTGSQ---------- 379 (415)
Q Consensus 326 ---~~~~~~h~~------------~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t-~~~~~~~~~~~~---------- 379 (415)
+..+..|.. .|.+++|+|++. +|++++ . +.|++||+.+ ++++..+.....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRD--Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEE--S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEee--C-CeEEEEeCCCCccccceeecccccccccccccc
Confidence 788888876 899999999987 666775 5 9999999997 887777764432
Q ss_pred ------EEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 380 ------VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 380 ------V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+..++|+|++++|++ |+.||.|++||+.+.+.
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~s--~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVMT--GSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEEE--ECSTTEEEEEETTTCCE
T ss_pred ccccccceEEEECCCCCEEEE--eccCCEEEEEEcCCCcc
Confidence 334999999999988 88999999999988654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=272.60 Aligned_cols=233 Identities=18% Similarity=0.260 Sum_probs=190.0
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCC--CeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe---
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSS--KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--- 241 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~--~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~--- 241 (415)
.|++++|+| +++|+++ .|+.|++|++.++ +....+. +|...|++++|+|++++|++|+.||.|++||+.+++
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~ 91 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWK 91 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCcee
Confidence 588999999 7788888 6899999999988 4444443 789999999999999999999999999999999876
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc--cEEEecc-ccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED--FVSKLSG-HKSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~-h~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
....+.+|...|.+++|+ +++|++|+.|+.|++||++.... ....+.+ |...|.+++|+|++++|++|+.|+.|+
T Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~ 171 (377)
T 3dwl_C 92 QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAY 171 (377)
T ss_dssp CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEE
T ss_pred eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEE
Confidence 677788899999999998 57999999999999999988753 3566666 999999999999999999999999999
Q ss_pred EEECC------------------CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE----EEEe
Q 014934 317 VWNQH------------------STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH----LSCM 374 (415)
Q Consensus 317 iwd~~------------------~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~----~~~~ 374 (415)
+||+. .++++..+ +|...|.+++|+|+++ +|++++ .|+.|++||+.+++. +..+
T Consensus 172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~ 247 (377)
T 3dwl_C 172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAG--HDSSVTIAYPSAPEQPPRALITV 247 (377)
T ss_dssp EEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEE--TTTEEC-CEECSTTSCEEECCCE
T ss_pred EEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEe--CCCcEEEEECCCCCCcceeeEee
Confidence 99985 34566666 8999999999999998 566665 799999999999887 5555
Q ss_pred e-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 375 D-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 375 ~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
. +...|.+++|+|++++|++ |+.+ .+.+|+..
T Consensus 248 ~~~~~~v~~~~~s~~~~~l~~--~~~~-~~~~~~~~ 280 (377)
T 3dwl_C 248 KLSQLPLRSLLWANESAIVAA--GYNY-SPILLQGN 280 (377)
T ss_dssp ECSSSCEEEEEEEETTEEEEE--ESSS-SEEEECCC
T ss_pred cCCCCceEEEEEcCCCCEEEE--EcCC-cEEEEEeC
Confidence 4 6678999999999998887 6555 55577765
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-31 Score=259.29 Aligned_cols=241 Identities=23% Similarity=0.404 Sum_probs=206.2
Q ss_pred CCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC-CCee
Q 014934 166 DDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS-RCKR 242 (415)
Q Consensus 166 ~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~-~~~~ 242 (415)
....|.+++|+| +++|+++ .++.|++||+.+++....+. +|...|.+++| ++.+|++|+.||.|++||+. ....
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA-GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec-CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 355799999999 6777777 58999999999999888776 88999999999 56799999999999999998 5667
Q ss_pred eEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCC-CEEEEEe--CCCcEEE
Q 014934 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN-RELASGG--NDNRLFV 317 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~lasg~--~dg~I~i 317 (415)
+..+.+|...|.+++|+ +.+|++|+.||.|++||++... ....+..|...|.+++|+|++ .++++|+ .|+.|++
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 88889999999999998 5799999999999999999876 577788999999999999976 5666665 7999999
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe---eCCCCEEEEEECCCCCeEEE
Q 014934 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM---DTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~---~~~~~V~~l~~s~~~~~l~s 394 (415)
||+.+++++..+ .|...|.+++|+|++..+++++ |..|+.|++||+.+++..... .+...|.+++|+|++++|++
T Consensus 289 ~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 366 (401)
T 4aez_A 289 WNAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTH-GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILST 366 (401)
T ss_dssp EETTTCCEEEEE-ECSSCEEEEEECSSSSEEEEEE-CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEE
T ss_pred EECCCCCEEEEE-eCCCcEEEEEECCCCCeEEEEe-ecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEE
Confidence 999999999888 4677899999999998555553 447999999999997665543 36788999999999999999
Q ss_pred EEecCCCcEEEEECCCCccc
Q 014934 395 THGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s~~~l 414 (415)
++.||.|++|++.+.+.+
T Consensus 367 --~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 367 --AASDENLKFWRVYDGDHV 384 (401)
T ss_dssp --ECTTSEEEEEECCC----
T ss_pred --EeCCCcEEEEECCCCccc
Confidence 788999999999887653
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-33 Score=281.49 Aligned_cols=238 Identities=10% Similarity=0.140 Sum_probs=196.2
Q ss_pred cceeEeecCC-C---------cEEEEE--------------------cCCeEEEEECCCCCeEE--eE-ecCCCCCeEEE
Q 014934 168 FYLNLVDWSS-H---------NVLAVG--------------------LGNCVYLWNACSSKVTK--LC-DLGIDDSVCSV 214 (415)
Q Consensus 168 ~~i~~l~ws~-~---------~~la~~--------------------~d~~V~iwd~~~~~~~~--~~-~~~~~~~V~~v 214 (415)
..|.+|+|+| + ++||++ .|++|+||++.+++... .. ...|.+.|.+|
T Consensus 134 ~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v 213 (524)
T 2j04_B 134 GLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDL 213 (524)
T ss_dssp C--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEE
T ss_pred CceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEE
Confidence 3577888888 4 577764 35689999998876422 11 11567889999
Q ss_pred EEcCC------CCeEEEEECCCcEEEEECCCCee-----------eEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEE
Q 014934 215 GWANR------NTHLAVGTSHGKVQIWDASRCKR-----------VRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRD 276 (415)
Q Consensus 215 ~~sp~------g~~la~g~~dg~V~iwd~~~~~~-----------~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd 276 (415)
+|+|+ +.+||+|+.||+|+|||+.+++. ...+.+|...|.+++|+ +..|++|+.||+|++||
T Consensus 214 ~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD 293 (524)
T 2j04_B 214 KWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFD 293 (524)
T ss_dssp EECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEE
T ss_pred EECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEE
Confidence 99997 57999999999999999976532 24678899999999998 57999999999999999
Q ss_pred CCCCCccEEEeccccCCeEEE--EEeCCC-CEEEEEeCCCcEEEEECCCCceeEEeccCCC--cEEEEEEcCCCCcEEEE
Q 014934 277 IRAQEDFVSKLSGHKSEVCGL--KWSYDN-RELASGGNDNRLFVWNQHSTQPVLKYCEHTA--AVKAIAWSPHLHGLLAS 351 (415)
Q Consensus 277 ~~~~~~~~~~~~~h~~~V~~l--~~spdg-~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~--~V~~l~~sp~~~~llas 351 (415)
++++..+...+.+|...|.++ .|+|++ .+||+|+.|++|+|||+++++++..+.+|.. .|.+++|+|++. .+++
T Consensus 294 ~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~-~l~s 372 (524)
T 2j04_B 294 LTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY-SYIY 372 (524)
T ss_dssp TTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT-EEEE
T ss_pred CCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcC-eEEE
Confidence 997754566788999999999 578888 8999999999999999999887777777764 588999999987 5666
Q ss_pred EcCCCCCeEEEEECCCCcEEEEe-eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 352 GGGTADRCIRFWNTTTNTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 352 ggg~~d~~I~iwd~~t~~~~~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
++ .|++|++||++++.++..+ .|...|.+++|+|+++.|++ |+.|++|++|++..
T Consensus 373 ~~--~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~S--gs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 373 SD--GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLA--GSADGSLIITNAAR 428 (524)
T ss_dssp EC--SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEE--EETTTEEECCBSCS
T ss_pred eC--CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEE--EECCCEEEEEechH
Confidence 65 7999999999999876655 47889999999999999998 88999999999754
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=278.56 Aligned_cols=235 Identities=22% Similarity=0.382 Sum_probs=201.6
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
...|++++|++ +++|++| .|+.|+|||+.+++....+. +|...|.+++|+|++++|++|+.||+|+|||+.......
T Consensus 430 ~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~ 508 (694)
T 3dm0_A 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT 508 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee
Confidence 34689999999 6777666 58999999999998877775 899999999999999999999999999999987654433
Q ss_pred Ee---cCCCccEEEEEeeC----CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 014934 245 TM---EGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (415)
Q Consensus 245 ~l---~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~i 317 (415)
.. .+|...|.+++|++ ..|++|+.|++|++||++... ....+.+|...|.+++|+|++++|++|+.|+.|+|
T Consensus 509 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~i 587 (694)
T 3dm0_A 509 ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLL 587 (694)
T ss_dssp ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEE
T ss_pred eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 32 46889999999984 479999999999999999876 67888999999999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC--------------------
Q 014934 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-------------------- 377 (415)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-------------------- 377 (415)
||+.+++.+..+. +...|.+++|+|++. ++++++ ++.|++||+.+++.+..+...
T Consensus 588 wd~~~~~~~~~~~-~~~~v~~~~~sp~~~-~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (694)
T 3dm0_A 588 WDLAEGKKLYSLE-ANSVIHALCFSPNRY-WLCAAT---EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV 662 (694)
T ss_dssp EETTTTEEEECCB-CSSCEEEEEECSSSS-EEEEEE---TTEEEEEETTTTEEEEEECCCCC----------------CC
T ss_pred EECCCCceEEEec-CCCcEEEEEEcCCCc-EEEEEc---CCCEEEEECCCCCChhhhccccccccccccccccccCCcee
Confidence 9999999888774 456899999999976 666654 778999999999888766421
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
..+++++|+|+|++|++ |+.||.|+||++..
T Consensus 663 ~~~~~l~~spdg~~l~s--gs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 663 IYCTSLNWSADGSTLFS--GYTDGVIRVWGIGR 693 (694)
T ss_dssp CCEEEEEECTTSSEEEE--EETTSEEEEEEC--
T ss_pred EEeeeEEEcCCCCEEEE--EcCCCeEEEEeccC
Confidence 13688999999999999 88999999999863
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=260.76 Aligned_cols=236 Identities=16% Similarity=0.253 Sum_probs=201.8
Q ss_pred CcceeEeecCCC-----cEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCC
Q 014934 167 DFYLNLVDWSSH-----NVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 167 ~~~i~~l~ws~~-----~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~ 239 (415)
+..+.+++|++. .+|+++ .|+.|++||+.+++....+. +|...|.+++|+| ++.+|++|+.||.|++||+.+
T Consensus 69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 346899999984 355555 68999999999999887776 7899999999999 899999999999999999999
Q ss_pred CeeeEEe---cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc---------------------------EEEe
Q 014934 240 CKRVRTM---EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF---------------------------VSKL 287 (415)
Q Consensus 240 ~~~~~~l---~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~---------------------------~~~~ 287 (415)
++.+..+ .+|...|.+++|+ +++|++++.||.|++||++..... ....
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 9999888 6899999999998 579999999999999999875411 2233
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce--------------eEEeccCCCcEEEEEEcCC--CCcEEEE
Q 014934 288 SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP--------------VLKYCEHTAAVKAIAWSPH--LHGLLAS 351 (415)
Q Consensus 288 ~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~--------------~~~~~~h~~~V~~l~~sp~--~~~llas 351 (415)
.+|...|.+++|+ +++|++++.|+.|++||+.++.. +..+..|...|.+++|+|+ +. +|++
T Consensus 228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~ 304 (366)
T 3k26_A 228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLAL 304 (366)
T ss_dssp SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEE
T ss_pred cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEE
Confidence 3499999999999 77999999999999999987644 7788899999999999999 76 7777
Q ss_pred EcCCCCCeEEEEECCCCcE----EEEee-C--CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 352 GGGTADRCIRFWNTTTNTH----LSCMD-T--GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 352 ggg~~d~~I~iwd~~t~~~----~~~~~-~--~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
++ .|+.|++||+.+++. ...+. + ...|.+++|+|++++|++ ++.||.|++||+.+
T Consensus 305 ~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 305 GN--QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIA--VCDDASIWRWDRLR 366 (366)
T ss_dssp EC--TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEE--EETTSEEEEEEC--
T ss_pred Ee--cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEE--EeCCCEEEEEEecC
Confidence 76 899999999998863 33444 3 588999999999999999 77999999999863
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=267.65 Aligned_cols=236 Identities=15% Similarity=0.181 Sum_probs=200.2
Q ss_pred eeEeecCC-CcEEEE-EcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 170 LNLVDWSS-HNVLAV-GLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 170 i~~l~ws~-~~~la~-~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
++.++|+| ++.|++ +.++.|++||..+++....+. .+ ..+....|++++++||+|+.||.|++||+.+++.+..+.
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK-RA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC-SC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe-cC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 44678998 554544 478999999998876554443 22 455666789999999999999999999999999998889
Q ss_pred CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q 014934 248 GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP 325 (415)
Q Consensus 248 ~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~ 325 (415)
+|...|.+++|+ +.+|++|+.|+.|++||++++. .+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence 999999999998 4799999999999999999887 5677889999999999999999999999999999999999999
Q ss_pred eEEecc---CCCcEEEEEE---------------------cCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--CCCC
Q 014934 326 VLKYCE---HTAAVKAIAW---------------------SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQ 379 (415)
Q Consensus 326 ~~~~~~---h~~~V~~l~~---------------------sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--~~~~ 379 (415)
+..+.. |...|.+++| +|++. ++++++ .|+.|++||+.+++.+..+. +...
T Consensus 216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~ 292 (420)
T 3vl1_A 216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGH--VSGVITVHNVFSKEQTIQLPSKFTCS 292 (420)
T ss_dssp EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEE--TTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEc--CCCeEEEEECCCCceeEEcccccCCC
Confidence 988874 4455555555 67776 666666 79999999999999887775 4578
Q ss_pred EEEEEECCCCC-eEEEEEecCCCcEEEEECCCCcc
Q 014934 380 VCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 380 V~~l~~s~~~~-~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
|.+++|+|++. +|++ |+.||.|++||+.+.++
T Consensus 293 v~~~~~~~~~~~~l~~--g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYA--GYENGMLAQWDLRSPEC 325 (420)
T ss_dssp EEEEEECSSCTTEEEE--EETTSEEEEEETTCTTS
T ss_pred ceeEEEeCCCCCEEEE--EeCCCeEEEEEcCCCcC
Confidence 99999999999 7777 78999999999998754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-31 Score=249.09 Aligned_cols=239 Identities=21% Similarity=0.331 Sum_probs=209.3
Q ss_pred CcceeEeecCC--CcEEEEE-cCCeEEEEECCCCCe-----EEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC
Q 014934 167 DFYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSKV-----TKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 167 ~~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~-----~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~ 238 (415)
.-.|++|+|+| +++|++| .|++|+|||+.+.+. ...+. +|...|.+++|+|+|++|++|+.||.|++|+..
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT 116 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-CCCCCEEEEEECCCCCEEEEEcccccceEEeec
Confidence 34699999998 4677765 689999999877542 22332 789999999999999999999999999999999
Q ss_pred CCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCC--CEEEEEeCCCc
Q 014934 239 RCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN--RELASGGNDNR 314 (415)
Q Consensus 239 ~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg--~~lasg~~dg~ 314 (415)
..........+...+..+.+. +.+|++|+.|+.+++||+...........+|...|..++|++++ .++++++.|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~ 196 (340)
T 4aow_A 117 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 196 (340)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE
Confidence 998888888888889888887 57999999999999999988776566677899999999999764 57899999999
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 315 LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 315 I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
|++||+++++.+..+.+|...|.+++|+|+++ +|++++ .|+.|++||+.+++.+..+.+...|..+.|+|++..+++
T Consensus 197 i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 273 (340)
T 4aow_A 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA 273 (340)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEE
T ss_pred EEEEECCCCceeeEecCCCCcEEEEEECCCCC-EEEEEe--CCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeec
Confidence 99999999999999999999999999999987 777776 899999999999999999999999999999999876654
Q ss_pred EEecCCCcEEEEECCCCc
Q 014934 395 THGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s~~ 412 (415)
+.|+.|++||+++..
T Consensus 274 ---~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 274 ---ATGPSIKIWDLEGKI 288 (340)
T ss_dssp ---EETTEEEEEETTTTE
T ss_pred ---cCCCEEEEEECCCCe
Confidence 468999999998754
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-32 Score=264.54 Aligned_cols=235 Identities=12% Similarity=0.134 Sum_probs=198.1
Q ss_pred eeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 170 LNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 170 i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
+.+..|++ +++|+++ .++.|++||+.+++....+. +|...|++++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 178 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI 178 (420)
T ss_dssp EEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE
T ss_pred eEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc
Confidence 44556777 6677776 67899999999888766554 789999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEecc---ccCCeE---------------------EEEEeC
Q 014934 248 GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSG---HKSEVC---------------------GLKWSY 301 (415)
Q Consensus 248 ~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~---h~~~V~---------------------~l~~sp 301 (415)
+|...|.+++|+ +.+|++|+.||.|++||++++. .+..+.. |...|. +++|+|
T Consensus 179 ~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 179 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc-eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 999999999998 5799999999999999999876 4555553 334444 455578
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE-EEEee--CC
Q 014934 302 DNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH-LSCMD--TG 377 (415)
Q Consensus 302 dg~~lasg~~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~-~~~~~--~~ 377 (415)
++++|++|+.||.|++||+++++.+..+. .|...|.+++|+|++..+|++++ .|+.|++||+.+++. +..+. +.
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~ 335 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY--ENGMLAQWDLRSPECPVGEFLINEG 335 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEEESTT
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe--CCCeEEEEEcCCCcCchhhhhccCC
Confidence 99999999999999999999998877775 58899999999999987888887 899999999998754 55554 56
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
..|..+.| ++++.|++ ++.|+.|++|++...
T Consensus 336 ~~v~~~~~-~~~~~l~s--~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 336 TPINNVYF-AAGALFVS--SGFDTSIKLDIISDP 366 (420)
T ss_dssp SCEEEEEE-ETTEEEEE--ETTTEEEEEEEECCT
T ss_pred CCceEEEe-CCCCEEEE--ecCCccEEEEeccCC
Confidence 77888855 47778888 789999999998764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=259.13 Aligned_cols=242 Identities=17% Similarity=0.314 Sum_probs=200.5
Q ss_pred CcceeEeecCCC----cEEEEE-cCCeEEEEECCCCC-eEEeEecCCCCCeEEEEE------cCCCCeEEEEECCCcEEE
Q 014934 167 DFYLNLVDWSSH----NVLAVG-LGNCVYLWNACSSK-VTKLCDLGIDDSVCSVGW------ANRNTHLAVGTSHGKVQI 234 (415)
Q Consensus 167 ~~~i~~l~ws~~----~~la~~-~d~~V~iwd~~~~~-~~~~~~~~~~~~V~~v~~------sp~g~~la~g~~dg~V~i 234 (415)
...|.+++|+|. ++|+++ .++.|++||+.+++ ....+. +|...|.++.| +|++++|++|+.||.|++
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v 143 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKV 143 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEE
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEE
Confidence 346899999994 777766 58999999999887 555554 78999999954 689999999999999999
Q ss_pred EECCCCe-eeEEecCCCc----cEEEEEe----e--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC--
Q 014934 235 WDASRCK-RVRTMEGHRL----RVGALAW----S--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-- 301 (415)
Q Consensus 235 wd~~~~~-~~~~l~~h~~----~V~~l~~----~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-- 301 (415)
||+.+++ .+..+..|.+ .|.+++| + +.+|++|+.||.|++||++.... .....|...|.+++|+|
T Consensus 144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFDRKD 221 (357)
T ss_dssp ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEESCSS
T ss_pred EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcCCCC
Confidence 9999886 6777766554 8999984 4 68999999999999999998763 44567889999999999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCceeEEec-----cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc------
Q 014934 302 -DNRELASGGNDNRLFVWNQHSTQPVLKYC-----EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT------ 369 (415)
Q Consensus 302 -dg~~lasg~~dg~I~iwd~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~------ 369 (415)
++++|++|+.||.|++||+++++.+..+. +|...|.+++|+|++..++++++ .|+.|++||+.++.
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG--GAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE--TTSEEEEEEEECCSCC--CC
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe--CCCcEEEeecCCCccccccc
Confidence 99999999999999999998876655444 89999999999999887888887 89999999998643
Q ss_pred -------------EEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 370 -------------HLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 370 -------------~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
.+..+. +...|.+++|+|+++.|+++ |+.|+.|+||++.++++|
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s-~~~d~~i~iw~~~~~~~i 357 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVC-SSFDQTVRVLIVTKLNKI 357 (357)
T ss_dssp TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEE-EETTSEEEEEEECC----
T ss_pred CCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEE-ecCCCcEEEEECCCcccC
Confidence 344444 67789999999999999833 678999999999988764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-31 Score=261.84 Aligned_cols=238 Identities=19% Similarity=0.312 Sum_probs=212.7
Q ss_pred CcceeEeecCCCcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEc--CCCCeEEEEECCCcEEEEECCCCe--
Q 014934 167 DFYLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWA--NRNTHLAVGTSHGKVQIWDASRCK-- 241 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~s--p~g~~la~g~~dg~V~iwd~~~~~-- 241 (415)
...|.+++|+++..|+++ .|+.|++||+.+++....+. +|.+.|.+++|+ +++.+|++|+.||.|++||+.+..
T Consensus 162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~ 240 (464)
T 3v7d_B 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240 (464)
T ss_dssp SSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC
T ss_pred CcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc
Confidence 456999999995555555 68999999999998877775 789999999998 578999999999999999998764
Q ss_pred ---------------------eeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEe
Q 014934 242 ---------------------RVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS 300 (415)
Q Consensus 242 ---------------------~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 300 (415)
.+..+.+|...|.++..++++|++|+.||.|++||+++.. .+..+.+|...|.+++|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~ 319 (464)
T 3v7d_B 241 PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYD 319 (464)
T ss_dssp ------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEE
T ss_pred ccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCEEEEEEc
Confidence 2556788999999999999999999999999999999876 678889999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCE
Q 014934 301 YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV 380 (415)
Q Consensus 301 pdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V 380 (415)
|++++|++|+.||.|++||+++++++..+.+|...|.+++|++ ..+++++ .|+.|++||+.++.......+...+
T Consensus 320 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~ 394 (464)
T 3v7d_B 320 HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD---KFLVSAA--ADGSIRGWDANDYSRKFSYHHTNLS 394 (464)
T ss_dssp TTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS---SEEEEEE--TTSEEEEEETTTCCEEEEEECTTCC
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC---CEEEEEe--CCCcEEEEECCCCceeeeecCCCCc
Confidence 9999999999999999999999999999999999999999984 3777776 8999999999999988888888888
Q ss_pred EEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 381 ~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
..++|+++++.|++ |+ ||.|++||+.+++.+
T Consensus 395 ~~~~~~~~~~~l~~--~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 395 AITTFYVSDNILVS--GS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp CEEEEEECSSEEEE--EE-TTEEEEEETTTCCEE
T ss_pred cEEEEEeCCCEEEE--ec-CCeEEEEECCCCcEE
Confidence 99999999999988 55 899999999987654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=262.00 Aligned_cols=242 Identities=20% Similarity=0.327 Sum_probs=202.6
Q ss_pred cceeEeecCCCc--EEEE-EcCCeEEEEECCCCC----eEEeEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCC
Q 014934 168 FYLNLVDWSSHN--VLAV-GLGNCVYLWNACSSK----VTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 168 ~~i~~l~ws~~~--~la~-~~d~~V~iwd~~~~~----~~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~ 239 (415)
+..+.+++++.. +++. +.++.|+||++.... ....+. +|.+.|++++|+| ++++|++|+.||.|+|||+.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBC-CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEe-cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 345567888844 3333 357999999986542 122222 7899999999999 999999999999999999988
Q ss_pred C-------eeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEe--ccccCCeEEEEEeCCCCEEE
Q 014934 240 C-------KRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKL--SGHKSEVCGLKWSYDNRELA 307 (415)
Q Consensus 240 ~-------~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~la 307 (415)
+ +.+..+.+|...|.+++|++ ++|++|+.||.|++||++++. .+..+ .+|...|.+++|+|++++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceEEEEECCCCCEEE
Confidence 7 56788899999999999993 589999999999999999886 56677 78999999999999999999
Q ss_pred EEeCCCcEEEEECCCCceeEEe-ccCCCc-EEEEEEcCCCCcEEEEE-cCCCCCeEEEEECCCCcE---EEEeeCCCCEE
Q 014934 308 SGGNDNRLFVWNQHSTQPVLKY-CEHTAA-VKAIAWSPHLHGLLASG-GGTADRCIRFWNTTTNTH---LSCMDTGSQVC 381 (415)
Q Consensus 308 sg~~dg~I~iwd~~~~~~~~~~-~~h~~~-V~~l~~sp~~~~llasg-gg~~d~~I~iwd~~t~~~---~~~~~~~~~V~ 381 (415)
+++.|+.|++||+++++.+..+ ..|.+. +.+++|+|++. +|++| +++.|+.|++||+.+++. ...+.+...+.
T Consensus 193 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 271 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVL 271 (402)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCE
T ss_pred EEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCcee
Confidence 9999999999999999999888 688876 89999999986 66666 112799999999998764 33445678899
Q ss_pred EEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 382 ~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.++|+|+++.|+++ |..|+.|++|++.+.+.
T Consensus 272 ~~~~s~~~~~l~~~-g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 272 LPFFDPDTNIVYLC-GKGDSSIRYFEITSEAP 302 (402)
T ss_dssp EEEEETTTTEEEEE-ETTCSCEEEEEECSSTT
T ss_pred EEEEcCCCCEEEEE-EcCCCeEEEEEecCCCc
Confidence 99999999999765 66799999999988763
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=267.88 Aligned_cols=242 Identities=17% Similarity=0.400 Sum_probs=207.3
Q ss_pred ceeEeecCC-Cc-EEEEE-----------cCCeEEEEECCCCCeE-EeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEE
Q 014934 169 YLNLVDWSS-HN-VLAVG-----------LGNCVYLWNACSSKVT-KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQI 234 (415)
Q Consensus 169 ~i~~l~ws~-~~-~la~~-----------~d~~V~iwd~~~~~~~-~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~i 234 (415)
.+.+++|+| +. +|+++ .|+.|++|++.+++.. .+..+.|...|++++|+|++++|++|+.||.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 477899999 44 88887 4679999999887532 2223367889999999999999999999999999
Q ss_pred EECCC----CeeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCC------ccE--EEeccccCCeEEEEE
Q 014934 235 WDASR----CKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQE------DFV--SKLSGHKSEVCGLKW 299 (415)
Q Consensus 235 wd~~~----~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~------~~~--~~~~~h~~~V~~l~~ 299 (415)
||+.+ .+.+..+.+|...|.+++|+ +.+|++|+.||.|++||++... ... .....|...|.+++|
T Consensus 94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 173 (416)
T 2pm9_A 94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173 (416)
T ss_dssp ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE
T ss_pred eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe
Confidence 99987 45888899999999999998 4699999999999999998875 222 234678999999999
Q ss_pred eCC-CCEEEEEeCCCcEEEEECCCCceeEEeccC------CCcEEEEEEcCCCCcEEEEEcCCCCC---eEEEEECCCC-
Q 014934 300 SYD-NRELASGGNDNRLFVWNQHSTQPVLKYCEH------TAAVKAIAWSPHLHGLLASGGGTADR---CIRFWNTTTN- 368 (415)
Q Consensus 300 spd-g~~lasg~~dg~I~iwd~~~~~~~~~~~~h------~~~V~~l~~sp~~~~llasggg~~d~---~I~iwd~~t~- 368 (415)
+|+ +.+|++++.|+.|++||+++++.+..+..| ...|.+++|+|++..++++++ .|+ .|++||++++
T Consensus 174 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 174 NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT--GSDNDPSILIWDLRNAN 251 (416)
T ss_dssp CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE--CCSSSCCCCEEETTSTT
T ss_pred CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE--CCCCCceEEEEeCCCCC
Confidence 999 789999999999999999999999888776 789999999999877888887 787 9999999986
Q ss_pred cEEEEee--CCCCEEEEEECC-CCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 369 THLSCMD--TGSQVCNLVWSK-NVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 369 ~~~~~~~--~~~~V~~l~~s~-~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+.+..+. +...|.+++|+| ++++|++ ++.|+.|++||+.+++.+
T Consensus 252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s--~~~dg~v~~wd~~~~~~~ 298 (416)
T 2pm9_A 252 TPLQTLNQGHQKGILSLDWCHQDEHLLLS--SGRDNTVLLWNPESAEQL 298 (416)
T ss_dssp SCSBCCCSCCSSCEEEEEECSSCSSCEEE--EESSSEEEEECSSSCCEE
T ss_pred CCcEEeecCccCceeEEEeCCCCCCeEEE--EeCCCCEEEeeCCCCccc
Confidence 5566665 678899999999 8898988 778999999999887643
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=259.11 Aligned_cols=196 Identities=13% Similarity=0.061 Sum_probs=166.1
Q ss_pred CCeEEEEEcCCCCeEEEEE--CCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccE
Q 014934 209 DSVCSVGWANRNTHLAVGT--SHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFV 284 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~--~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~ 284 (415)
..+.+++|+|||++||+++ .|++|+|||+.+++++..+. |...|.+++|+ +.+|++++.+ .+.+|+..++....
T Consensus 134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~ 211 (365)
T 4h5i_A 134 DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIA 211 (365)
T ss_dssp CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEE
T ss_pred cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCccee
Confidence 4578999999999987665 68999999999999998886 77889999998 4688888754 56777776665333
Q ss_pred -EEeccccCCeEEEEEeCCCCEEEEEeCCC----cEEEEECCCCce----eEEeccCCCcEEEEEEcCCCCcEEEEEcCC
Q 014934 285 -SKLSGHKSEVCGLKWSYDNRELASGGNDN----RLFVWNQHSTQP----VLKYCEHTAAVKAIAWSPHLHGLLASGGGT 355 (415)
Q Consensus 285 -~~~~~h~~~V~~l~~spdg~~lasg~~dg----~I~iwd~~~~~~----~~~~~~h~~~V~~l~~sp~~~~llasggg~ 355 (415)
....+|...|.+++|+|+++++++++.|+ .+++||+..... ...+.+|...|++++|+|+|+ +||+|+
T Consensus 212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs-- 288 (365)
T 4h5i_A 212 RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LAVLAS-- 288 (365)
T ss_dssp EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EEEEEE--
T ss_pred eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ceEEEc--
Confidence 34557888999999999999999999887 688899876643 345678999999999999997 788887
Q ss_pred CCCeEEEEECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 356 ADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 356 ~d~~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
.|+.|+|||+.+++++..+. |...|++++|+|||++|++ |+.|++|+||++|..
T Consensus 289 ~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS--~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 289 NDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVAS--VSAANTIHIIKLPLN 344 (365)
T ss_dssp TTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEE--EETTSEEEEEECCTT
T ss_pred CCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEE--EeCCCeEEEEEcCCC
Confidence 89999999999999998863 7789999999999999999 789999999999753
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-31 Score=257.59 Aligned_cols=237 Identities=17% Similarity=0.301 Sum_probs=210.3
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
.-.|.+++|+| +++|+++ .++.|++|+ .+++....+. .|...|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 33699999999 6777776 578999999 5666666664 788999999999999999999999999999999999999
Q ss_pred EecCCCcc---------------EEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEE
Q 014934 245 TMEGHRLR---------------VGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELAS 308 (415)
Q Consensus 245 ~l~~h~~~---------------V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 308 (415)
.+..+... +.+++|+ +..+++++.||.|++||++... ....+..|...|.+++|+|++++|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT-PTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS-CSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc-eeeeeccCCCceEEEEECCCCCEEEE
Confidence 99888776 8889998 6789999999999999999876 56778899999999999999999999
Q ss_pred EeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECC
Q 014934 309 GGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSK 387 (415)
Q Consensus 309 g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~ 387 (415)
++.|+.|++||+.+++.+..+..|...|.+++|+|++ ++++++ .|+.|++||+.+++.+..+. +...|.+++|+|
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCS--MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ 340 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEE--TTSEEEEEETTTTEEEEEEECTTCCEEEEEECT
T ss_pred EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEe--CCCcEEEEECCCCcEeEecccCCccEEEEEEcC
Confidence 9999999999999999999999999999999999998 666666 79999999999999888886 578899999999
Q ss_pred CCCeEEEEEecCCCcEEEEECCCCc
Q 014934 388 NVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 388 ~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
++++|++ ++.||.|++|++.+.+
T Consensus 341 ~~~~l~~--~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 341 DGQKYAV--AFMDGQVNVYDLKKLN 363 (425)
T ss_dssp TSSEEEE--EETTSCEEEEECHHHH
T ss_pred CCCEEEE--EECCCeEEEEECCCCc
Confidence 9999998 7789999999997654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=281.87 Aligned_cols=239 Identities=17% Similarity=0.294 Sum_probs=216.7
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.|.+++|+| +.+|+++ .++.|+|||..+++....+. .|...|++++|+|+|++|++|+.||.|++||+.+++.+..+
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 93 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 589999999 7777777 47899999999998888776 78999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCC
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~ 323 (415)
.+|...|.+++|+ +.+|++|+.||.|++||++........+.+|...|.+++|+| ++++|++++.||.|++||+.++
T Consensus 94 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~ 173 (814)
T 3mkq_A 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (814)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS
T ss_pred ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 9999999999999 468999999999999999987656788889999999999999 8999999999999999999998
Q ss_pred ceeEEeccCC-CcEEEEEEcC--CCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecC
Q 014934 324 QPVLKYCEHT-AAVKAIAWSP--HLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 324 ~~~~~~~~h~-~~V~~l~~sp--~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
.....+..+. ..|.+++|+| ++. ++++++ .|+.|++||+.+++.+..+. +...|.+++|+|+++.|++ |+.
T Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~ 248 (814)
T 3mkq_A 174 TPNFTLTTGQERGVNYVDYYPLPDKP-YMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS--GSE 248 (814)
T ss_dssp SCSEEEECCCTTCCCEEEECCSTTCC-EEEEEC--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE--EET
T ss_pred cceeEEecCCCCCEEEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE--EeC
Confidence 8887777655 8899999999 776 666766 79999999999999988887 6788999999999999998 778
Q ss_pred CCcEEEEECCCCcc
Q 014934 400 QNQIIVWRYPTMSK 413 (415)
Q Consensus 400 dg~I~vw~~~s~~~ 413 (415)
||.|++||+.+++.
T Consensus 249 dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 249 DGTLKIWNSSTYKV 262 (814)
T ss_dssp TSCEEEEETTTCSE
T ss_pred CCeEEEEECCCCcE
Confidence 99999999987653
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=261.59 Aligned_cols=239 Identities=14% Similarity=0.212 Sum_probs=204.8
Q ss_pred CcceeEeecCCC--------cEEEEE-cCCeEEEEECCCCCe-----EEeEecCC-----CCCeEEEEEc----CCCCe-
Q 014934 167 DFYLNLVDWSSH--------NVLAVG-LGNCVYLWNACSSKV-----TKLCDLGI-----DDSVCSVGWA----NRNTH- 222 (415)
Q Consensus 167 ~~~i~~l~ws~~--------~~la~~-~d~~V~iwd~~~~~~-----~~~~~~~~-----~~~V~~v~~s----p~g~~- 222 (415)
...|.+++|++. ++|+++ .++.|++|++.+++. ...+. .| ...|.+++|+ |++++
T Consensus 62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~ 140 (397)
T 1sq9_A 62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLSHR 140 (397)
T ss_dssp TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC----CEE
T ss_pred CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeeccCCCCceE
Confidence 346899999986 567666 589999999998875 55554 55 4899999999 99999
Q ss_pred EEEEECCCcEEEEECCC------CeeeE-----Ee-------cCCCccEEEEEeeCC-EEEEEeCCCcEEEEECCCCCcc
Q 014934 223 LAVGTSHGKVQIWDASR------CKRVR-----TM-------EGHRLRVGALAWSSS-LLSSGSRDKSILQRDIRAQEDF 283 (415)
Q Consensus 223 la~g~~dg~V~iwd~~~------~~~~~-----~l-------~~h~~~V~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~ 283 (415)
|++|+.||.|++||+.+ ++.+. .+ ..|...|.+++|+++ +|++|+.||.|++||+++.. .
T Consensus 141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~ 219 (397)
T 1sq9_A 141 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLR-P 219 (397)
T ss_dssp EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTE-E
T ss_pred EEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCc-e
Confidence 99999999999999988 66665 66 458899999999933 99999999999999999876 5
Q ss_pred EEEecc---c---cCCeEEEEEeCCCCEEEEEeCC---CcEEEEECCCCceeEEecc-------------CCCcEEEEEE
Q 014934 284 VSKLSG---H---KSEVCGLKWSYDNRELASGGND---NRLFVWNQHSTQPVLKYCE-------------HTAAVKAIAW 341 (415)
Q Consensus 284 ~~~~~~---h---~~~V~~l~~spdg~~lasg~~d---g~I~iwd~~~~~~~~~~~~-------------h~~~V~~l~~ 341 (415)
+..+.. | ...|.+++|+|++++|++++.| +.|++||+++++.+..+.. |...|.+++|
T Consensus 220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 299 (397)
T 1sq9_A 220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 299 (397)
T ss_dssp EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEE
Confidence 777788 8 9999999999999999999999 9999999999999999988 9999999999
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-------C---------------CCCEEEEEECCCC----------
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-------T---------------GSQVCNLVWSKNV---------- 389 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-------~---------------~~~V~~l~~s~~~---------- 389 (415)
+|++. +|++++ .|+.|++||+.+++.+..+. + ...|.+++|+|++
T Consensus 300 ~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 376 (397)
T 1sq9_A 300 NDSGE-TLCSAG--WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 376 (397)
T ss_dssp CSSSS-EEEEEE--TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred CCCCC-EEEEEe--CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence 99987 666666 79999999999999998887 3 6889999999998
Q ss_pred CeEEEEEecCCCcEEEEECCCCc
Q 014934 390 NELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 390 ~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+.|++ |+.||.|++|++.+++
T Consensus 377 ~~l~s--~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 377 ESLCC--VCLDRSIRWFREAGGK 397 (397)
T ss_dssp CEEEE--EETTTEEEEEEEEC--
T ss_pred ceEEE--ecCCCcEEEEEcCCCC
Confidence 68888 7789999999998753
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=260.03 Aligned_cols=234 Identities=21% Similarity=0.323 Sum_probs=207.0
Q ss_pred ceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecC
Q 014934 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG 248 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~ 248 (415)
.+.++.++++.+++++.|+.|++||+.+++....+. +|.+.|++++|++++ +|++|+.||.|++||+.+++.+..+.+
T Consensus 124 v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~ 201 (464)
T 3v7d_B 124 VITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG 201 (464)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred cEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEe-CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence 366888876655556678999999999999887776 899999999999988 999999999999999999999999999
Q ss_pred CCccEEEEEee----CCEEEEEeCCCcEEEEECCCCCcc----------------------EEEeccccCCeEEEEEeCC
Q 014934 249 HRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQEDF----------------------VSKLSGHKSEVCGLKWSYD 302 (415)
Q Consensus 249 h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~----------------------~~~~~~h~~~V~~l~~spd 302 (415)
|...|.+++|. +.+|++|+.||.|++||++..... ...+.+|...|.++ +++
T Consensus 202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~ 279 (464)
T 3v7d_B 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH 279 (464)
T ss_dssp CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE
T ss_pred CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC
Confidence 99999999997 268999999999999999876522 45677898888877 577
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEE
Q 014934 303 NRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVC 381 (415)
Q Consensus 303 g~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~ 381 (415)
+++|++|+.|+.|++||+.+++++..+.+|...|.+++|+|++. .+++++ .|+.|++||+.+++++..+. +...|.
T Consensus 280 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~~~v~ 356 (464)
T 3v7d_B 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISAS--MDTTIRIWDLENGELMYTLQGHTALVG 356 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC-EEEEEe--CCCcEEEEECCCCcEEEEEeCCCCcEE
Confidence 99999999999999999999999999999999999999999987 666666 89999999999999998886 678899
Q ss_pred EEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 382 ~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
++.|+ +.+|++ |+.||.|++||+.+.++
T Consensus 357 ~~~~~--~~~l~s--~s~dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 357 LLRLS--DKFLVS--AAADGSIRGWDANDYSR 384 (464)
T ss_dssp EEEEC--SSEEEE--EETTSEEEEEETTTCCE
T ss_pred EEEEc--CCEEEE--EeCCCcEEEEECCCCce
Confidence 99997 578888 77899999999988654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-30 Score=244.88 Aligned_cols=238 Identities=20% Similarity=0.369 Sum_probs=203.9
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee-
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV- 243 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~- 243 (415)
...|.+++|+| +.+|+++ .|+.|++|+........... .+...+..+.+++++.+|++|+.||.+++||+......
T Consensus 86 ~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~ 164 (340)
T 4aow_A 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT 164 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE
T ss_pred CCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeec-CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE
Confidence 34699999999 6666666 68999999999887766665 66788999999999999999999999999999765543
Q ss_pred EEecCCCccEEEEEee----CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 014934 244 RTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd 319 (415)
....+|...+.+++|+ ..++++++.|+.|++||++... ....+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus 165 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd 243 (340)
T 4aow_A 165 VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243 (340)
T ss_dssp ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 4456899999999997 2578999999999999999886 6788899999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee----------CCCCEEEEEECCCC
Q 014934 320 QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD----------TGSQVCNLVWSKNV 389 (415)
Q Consensus 320 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~----------~~~~V~~l~~s~~~ 389 (415)
+++.+.+..+.. ...|.+++|+|++. +++++ .|+.|++||+.++..+..+. +...|++++|+|++
T Consensus 244 ~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 318 (340)
T 4aow_A 244 LNEGKHLYTLDG-GDIINALCFSPNRY-WLCAA---TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318 (340)
T ss_dssp TTTTEEEEEEEC-SSCEEEEEECSSSS-EEEEE---ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred eccCceeeeecC-CceEEeeecCCCCc-eeecc---CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence 999999988854 56899999999874 66554 59999999999988776653 45679999999999
Q ss_pred CeEEEEEecCCCcEEEEECCCCcc
Q 014934 390 NELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 390 ~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
++|++ |+.||.|+|||+.+++|
T Consensus 319 ~~l~s--gs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 319 QTLFA--GYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp SEEEE--EETTSCEEEEEEEC---
T ss_pred CEEEE--EeCCCEEEEEeCCCcCC
Confidence 99999 78999999999999875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=244.73 Aligned_cols=233 Identities=18% Similarity=0.196 Sum_probs=202.8
Q ss_pred cceeEeecCCCcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC---eee
Q 014934 168 FYLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---KRV 243 (415)
Q Consensus 168 ~~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~---~~~ 243 (415)
-.|++++|..+++|+++ .|+.|++||..+++....+. .|...|.+++|+|++++|++|+.||.|++|++... +.+
T Consensus 19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred CCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEee-cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence 46899999336666666 68999999998888777765 67899999999999999999999999999998654 567
Q ss_pred EEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCC
Q 014934 244 RTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~ 322 (415)
..+.+|...|.+++|++++|++++.||.|++|| .. .....+..|...|.+++|+| ++++|++++.|+.|++|| .
T Consensus 98 ~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~ 172 (313)
T 3odt_A 98 YTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EG-SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--N 172 (313)
T ss_dssp CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TT-EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--T
T ss_pred cchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CC-cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--c
Confidence 788899999999999999999999999999999 33 35777889999999999998 999999999999999999 5
Q ss_pred CceeEEecc-CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCC
Q 014934 323 TQPVLKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 323 ~~~~~~~~~-h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
.+.+..+.. |...|.+++|+|++. +++++ .|+.|++||+.+++.+..+. +...|.+++|+|++ .|++ ++.|
T Consensus 173 ~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~d 245 (313)
T 3odt_A 173 DKVIKTFSGIHNDVVRHLAVVDDGH--FISCS--NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVS--CGED 245 (313)
T ss_dssp TEEEEEECSSCSSCEEEEEEEETTE--EEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEE--EETT
T ss_pred CceEEEEeccCcccEEEEEEcCCCe--EEEcc--CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEE--EecC
Confidence 566777776 999999999999987 55555 79999999999999998887 77889999999999 5776 6789
Q ss_pred CcEEEEECCCCcc
Q 014934 401 NQIIVWRYPTMSK 413 (415)
Q Consensus 401 g~I~vw~~~s~~~ 413 (415)
|.|++||+.+.+.
T Consensus 246 g~v~iwd~~~~~~ 258 (313)
T 3odt_A 246 RTVRIWSKENGSL 258 (313)
T ss_dssp SEEEEECTTTCCE
T ss_pred CEEEEEECCCCce
Confidence 9999999988764
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=263.67 Aligned_cols=238 Identities=20% Similarity=0.377 Sum_probs=202.4
Q ss_pred cceeEeecCCC--cEEEEEc-CCeEEEEECCC----------CCeEEeEecCCCCCeEEEEEcCCCC-eEEEEECCCcEE
Q 014934 168 FYLNLVDWSSH--NVLAVGL-GNCVYLWNACS----------SKVTKLCDLGIDDSVCSVGWANRNT-HLAVGTSHGKVQ 233 (415)
Q Consensus 168 ~~i~~l~ws~~--~~la~~~-d~~V~iwd~~~----------~~~~~~~~~~~~~~V~~v~~sp~g~-~la~g~~dg~V~ 233 (415)
..|++++|+|. ++|+++. ++.|++|++.+ ......+. +|...|++++|+|++. +|++|+.||.|+
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 45889999993 5777774 78999999976 34444444 7889999999999998 999999999999
Q ss_pred EEECCCCee-------eEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCC--ccEEEeccccCCeEEEEEeC
Q 014934 234 IWDASRCKR-------VRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKSEVCGLKWSY 301 (415)
Q Consensus 234 iwd~~~~~~-------~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~sp 301 (415)
+||+.++.. ...+.+|...|.+++|+ +.+|++++.||.|++||++... .....+..|...|.+++|+|
T Consensus 208 vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p 287 (430)
T 2xyi_A 208 LWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 287 (430)
T ss_dssp EEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECS
T ss_pred EEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCC
Confidence 999987322 45677899999999997 4689999999999999999873 35667779999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEECCC-CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC------------
Q 014934 302 DNR-ELASGGNDNRLFVWNQHS-TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT------------ 367 (415)
Q Consensus 302 dg~-~lasg~~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t------------ 367 (415)
++. +|++|+.||.|++||+++ ..++..+..|...|.+++|+|++..+|++++ .|+.|++||+..
T Consensus 288 ~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~ 365 (430)
T 2xyi_A 288 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTEDAED 365 (430)
T ss_dssp SCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE--TTSCCEEEEGGGTTCCCCHHHHHH
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe--CCCcEEEEeCCCCccccCcccccc
Confidence 887 789999999999999998 5778899899999999999999988899987 899999999987
Q ss_pred --CcEEEEee-CCCCEEEEEECCCCC-eEEEEEecCCCcEEEEECCC
Q 014934 368 --NTHLSCMD-TGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 368 --~~~~~~~~-~~~~V~~l~~s~~~~-~l~s~~g~~dg~I~vw~~~s 410 (415)
.+.+..+. +...|.+++|+|++. .|++ ++.||.|+||++..
T Consensus 366 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s--~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 366 GPPELLFIHGGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAE 410 (430)
T ss_dssp CCTTEEEECCCCSSCEEEEEECSSSTTEEEE--EETTSEEEEEEECH
T ss_pred CCcceEEEcCCCCCCceEEEECCCCCCEEEE--EECCCCEEEeEccc
Confidence 24555543 567899999999999 5666 66899999999864
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=256.20 Aligned_cols=239 Identities=13% Similarity=0.262 Sum_probs=202.9
Q ss_pred CcceeEeecCC-C-cEEEEEc----CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCC---CCeEEEEECCCcEEEEEC
Q 014934 167 DFYLNLVDWSS-H-NVLAVGL----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR---NTHLAVGTSHGKVQIWDA 237 (415)
Q Consensus 167 ~~~i~~l~ws~-~-~~la~~~----d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~---g~~la~g~~dg~V~iwd~ 237 (415)
...|.+++|+| + .+++++. |+.|++|++.+++.......+|...|++++|+|+ |.+|++|+.||.|++||+
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 44699999999 5 4666663 7899999999998877766688899999999998 799999999999999999
Q ss_pred CCCe-eeEEecCCCccEEEEEe------e--CCEEEEEeCCCcEEEEECCCCCccEEEeccccC----CeEEEE----Ee
Q 014934 238 SRCK-RVRTMEGHRLRVGALAW------S--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKS----EVCGLK----WS 300 (415)
Q Consensus 238 ~~~~-~~~~l~~h~~~V~~l~~------~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~----~V~~l~----~s 300 (415)
.+++ .+..+.+|...|.+++| + +.+|++|+.||.|++||++........+..|.. .|.+++ |+
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (357)
T 3i2n_A 98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN 177 (357)
T ss_dssp TSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC
T ss_pred CCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC
Confidence 9887 88899999999999966 3 469999999999999999988755667766554 799998 78
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcC---CCCcEEEEEcCCCCCeEEEEECCCCcEEEEe---
Q 014934 301 YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP---HLHGLLASGGGTADRCIRFWNTTTNTHLSCM--- 374 (415)
Q Consensus 301 pdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp---~~~~llasggg~~d~~I~iwd~~t~~~~~~~--- 374 (415)
|++++|++|+.|+.|++||+++++.... ..|...|.+++|+| ++. ++++++ .|+.|++||+.+++.+..+
T Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~ 253 (357)
T 3i2n_A 178 QEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMN-KLVATS--LEGKFHVFDMRTQHPTKGFASV 253 (357)
T ss_dssp -CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCC-EEEEEE--STTEEEEEEEEEEETTTEEEEE
T ss_pred CCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCC-EEEEEC--CCCeEEEEeCcCCCcccceeee
Confidence 8999999999999999999999887554 57899999999999 776 566665 7999999999887654333
Q ss_pred ---eCCCCEEEEEECCCCC-eEEEEEecCCCcEEEEECCCC
Q 014934 375 ---DTGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 375 ---~~~~~V~~l~~s~~~~-~l~s~~g~~dg~I~vw~~~s~ 411 (415)
.+...|.+++|+|+++ +|++ |+.||.|++|++.+.
T Consensus 254 ~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 254 SEKAHKSTVWQVRHLPQNRELFLT--AGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEE--EETTSEEEEEEEECC
T ss_pred ccCCCcCCEEEEEECCCCCcEEEE--EeCCCcEEEeecCCC
Confidence 4778899999999998 5666 778999999999754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=261.80 Aligned_cols=240 Identities=21% Similarity=0.388 Sum_probs=204.6
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCC----CCeEEeEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCC
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACS----SKVTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~----~~~~~~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~ 239 (415)
...+++++|+| +.+|+++ .++.|++|++.+ .+....+. +|...|++++|+|+ +.+|++|+.||.|++||+.+
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 145 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence 34689999999 6677776 679999999987 33444443 78999999999998 89999999999999999988
Q ss_pred Ce------eeE---EecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccc------cCCeEEEEEeC
Q 014934 240 CK------RVR---TMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGH------KSEVCGLKWSY 301 (415)
Q Consensus 240 ~~------~~~---~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h------~~~V~~l~~sp 301 (415)
++ ... .+..|...|.+++|++ .+|++++.||.|++||++... .+..+..| ...|.+++|+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 146 CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-EVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-EEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-cceEEeccccccccCCceEEEEECC
Confidence 76 332 2367999999999984 589999999999999999876 46666655 78899999999
Q ss_pred CC-CEEEEEeCCC---cEEEEECCCC-ceeEEec-cCCCcEEEEEEcC-CCCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 302 DN-RELASGGNDN---RLFVWNQHST-QPVLKYC-EHTAAVKAIAWSP-HLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 302 dg-~~lasg~~dg---~I~iwd~~~~-~~~~~~~-~h~~~V~~l~~sp-~~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
++ .+|++++.|+ .|++||++++ .++..+. +|...|.+++|+| ++. +|++++ .|+.|++||+.+++.+..+
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~--~dg~v~~wd~~~~~~~~~~ 301 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH-LLLSSG--RDNTVLLWNPESAEQLSQF 301 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS-CEEEEE--SSSEEEEECSSSCCEEEEE
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC-eEEEEe--CCCCEEEeeCCCCccceee
Confidence 97 6899999998 9999999986 6777887 8999999999999 555 777776 7999999999999999888
Q ss_pred e-CCCCEEEEEECCCC-CeEEEEEecCCCcEEEEECCCCcc
Q 014934 375 D-TGSQVCNLVWSKNV-NELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 375 ~-~~~~V~~l~~s~~~-~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
. +...|.+++|+|++ ..|++ ++.|+.|++|++.+...
T Consensus 302 ~~~~~~v~~~~~s~~~~~~l~s--~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 302 PARGNWCFKTKFAPEAPDLFAC--ASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp ECSSSCCCCEEECTTCTTEEEE--CCSSSEEEEEESCCCCC
T ss_pred cCCCCceEEEEECCCCCCEEEE--EecCCcEEEEEccCCCC
Confidence 6 57789999999999 77777 78899999999987653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=257.51 Aligned_cols=238 Identities=21% Similarity=0.337 Sum_probs=203.1
Q ss_pred CcceeEeecCC----Cc--EEEEEcCCeEEEEECCCCCeEEeEec----CCCCCeEEEEEcCC----CCeEEEEECCCcE
Q 014934 167 DFYLNLVDWSS----HN--VLAVGLGNCVYLWNACSSKVTKLCDL----GIDDSVCSVGWANR----NTHLAVGTSHGKV 232 (415)
Q Consensus 167 ~~~i~~l~ws~----~~--~la~~~d~~V~iwd~~~~~~~~~~~~----~~~~~V~~v~~sp~----g~~la~g~~dg~V 232 (415)
.-.|++++|+| +. +++++.++.|++|+..+++....+.. .|...|++++|+|+ |.+|++|+.||.|
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i 97 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII 97 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE
Confidence 34699999996 23 77777889999999998776554432 36688999999998 6799999999999
Q ss_pred EEEECCCCeeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEe---ccccCCeEEEEEeCCCCEE
Q 014934 233 QIWDASRCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKL---SGHKSEVCGLKWSYDNREL 306 (415)
Q Consensus 233 ~iwd~~~~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~spdg~~l 306 (415)
++||+.+++.+..+.+|...|.+++|++ .+|++|+.||.|++||++.+. ....+ .+|...|.+++|+|++++|
T Consensus 98 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l 176 (366)
T 3k26_A 98 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT-LVAIFGGVEGHRDEVLSADYDLLGEKI 176 (366)
T ss_dssp EEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-EEEEECSTTSCSSCEEEEEECTTSSEE
T ss_pred EEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-EEEEecccccccCceeEEEECCCCCEE
Confidence 9999999999999999999999999974 799999999999999999876 45666 6899999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeEEec----------------------------cCCCcEEEEEEcCCCCcEEEEEcCCCCC
Q 014934 307 ASGGNDNRLFVWNQHSTQPVLKYC----------------------------EHTAAVKAIAWSPHLHGLLASGGGTADR 358 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~~~~~~----------------------------~h~~~V~~l~~sp~~~~llasggg~~d~ 358 (415)
++|+.||.|++||+++++.+..+. .|...|.+++|+ +. ++++++ .|+
T Consensus 177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~--~d~ 251 (366)
T 3k26_A 177 MSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKS--CEN 251 (366)
T ss_dssp EEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEEC--SSS
T ss_pred EEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEe--cCC
Confidence 999999999999999875543333 399999999999 44 777776 899
Q ss_pred eEEEEECCCCcE--------------EEEee-CCCCEEEEEECCC--CCeEEEEEecCCCcEEEEECCCCc
Q 014934 359 CIRFWNTTTNTH--------------LSCMD-TGSQVCNLVWSKN--VNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 359 ~I~iwd~~t~~~--------------~~~~~-~~~~V~~l~~s~~--~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
.|++||+.++.. +..+. +...|.+++|+|+ +++|++ |+.||.|++||+.+.+
T Consensus 252 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~--~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 252 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL--GNQVGKLYVWDLEVED 320 (366)
T ss_dssp EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE--ECTTSCEEEEECCSSS
T ss_pred EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE--EecCCcEEEEECCCCC
Confidence 999999988754 44444 5678999999999 999998 7899999999998865
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=257.21 Aligned_cols=243 Identities=17% Similarity=0.209 Sum_probs=203.6
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEe-cCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe--
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCD-LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-- 241 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~-~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~-- 241 (415)
...+++++|+| +++|+++ .|+.|++||+.+++...... ..|...|.+++|+|++++|++|+.||.|++||+...+
T Consensus 52 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~ 131 (372)
T 1k8k_C 52 NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 131 (372)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred CCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Confidence 34699999999 6666666 57999999998887655554 3688899999999999999999999999999998765
Q ss_pred --eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCC-----------------CCccEEEeccccCCeEEEEEe
Q 014934 242 --RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRA-----------------QEDFVSKLSGHKSEVCGLKWS 300 (415)
Q Consensus 242 --~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~-----------------~~~~~~~~~~h~~~V~~l~~s 300 (415)
.......|...|.+++|+ +.+|++|+.||.|++||++. ....+..+.+|...|.+++|+
T Consensus 132 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 211 (372)
T 1k8k_C 132 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 211 (372)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred eeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC
Confidence 233346789999999998 47999999999999999641 123577788999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC--CcE--------
Q 014934 301 YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT--NTH-------- 370 (415)
Q Consensus 301 pdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t--~~~-------- 370 (415)
|++++|++++.|+.|++||+++++++..+..|...|.+++|+|++. +++++ .|+.|++|++.+ ++.
T Consensus 212 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~---~d~~i~i~~~~~~~~~~~~~~~~~~ 287 (372)
T 1k8k_C 212 ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS-LVAAG---HDCFPVLFTYDSAAGKLSFGGRLDV 287 (372)
T ss_dssp SSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTE-EEEEE---TTSSCEEEEEETTTTEEEECCCCCC
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCC-EEEEE---eCCeEEEEEccCcCceEEEeeccCc
Confidence 9999999999999999999999999999999999999999999986 66665 599999999987 421
Q ss_pred ------------------------E------EEe--eCCCCEEEEEEC-CCC---CeEEEEEecCCCcEEEEECCCCccc
Q 014934 371 ------------------------L------SCM--DTGSQVCNLVWS-KNV---NELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 371 ------------------------~------~~~--~~~~~V~~l~~s-~~~---~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
. ..+ .|...|.+++|. ++| .+|++ |+.||.|++|++.+++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s--~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 288 PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCT--TGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp C--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEE--EETTSEEEEEEHHHHHHH
T ss_pred cccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEE--ecCCCceEEEEecChhHh
Confidence 0 112 367789999976 666 88888 789999999999887665
Q ss_pred C
Q 014934 415 L 415 (415)
Q Consensus 415 l 415 (415)
+
T Consensus 366 ~ 366 (372)
T 1k8k_C 366 L 366 (372)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=254.28 Aligned_cols=235 Identities=15% Similarity=0.196 Sum_probs=196.0
Q ss_pred cceeEeecCC-C-cEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCCee
Q 014934 168 FYLNLVDWSS-H-NVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 168 ~~i~~l~ws~-~-~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
-.|++++|+| + ++|+++ .|+.|++||+.+++....+.. +|...|.+++|+| ++++|++|+.||.|++||+.. +.
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~ 152 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SV 152 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cc
Confidence 4699999999 4 677777 579999999999888777754 6899999999999 789999999999999999986 55
Q ss_pred eEEecC---CCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCC-EEEEEeCCCcEE
Q 014934 243 VRTMEG---HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR-ELASGGNDNRLF 316 (415)
Q Consensus 243 ~~~l~~---h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~lasg~~dg~I~ 316 (415)
+..+.. |...|.+++|+ +.+|++|+.|+.|++||++ .. .+..+.+|...|.+++|+|+++ +|++|+.|+.|+
T Consensus 153 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 230 (383)
T 3ei3_B 153 IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVK 230 (383)
T ss_dssp EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEE
Confidence 555543 44889999999 5899999999999999995 33 5778889999999999999999 999999999999
Q ss_pred EEECCC----CceeEEeccCCCcEEEEEEcC-CCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-C--------------
Q 014934 317 VWNQHS----TQPVLKYCEHTAAVKAIAWSP-HLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-T-------------- 376 (415)
Q Consensus 317 iwd~~~----~~~~~~~~~h~~~V~~l~~sp-~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~-------------- 376 (415)
+||+++ +..+..+ +|...|.+++|+| ++. +|++++ .|+.|++||+.+++.+..+. +
T Consensus 231 iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T 3ei3_B 231 LWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST-KLLTTD--QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT 306 (383)
T ss_dssp EEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC-EEEEEE--SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred EEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC-EEEEEc--CCCcEEEEECCCCccccccccccccccccccceEEe
Confidence 999987 5666666 7999999999999 877 666666 79999999999887655543 1
Q ss_pred ---CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 377 ---GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 377 ---~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
...+..++|+|++++ + |+.|+.|+|||+.+++.
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s--~s~d~~i~iwd~~~~~~ 342 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--L--LNDKRTIDIYDANSGGL 342 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--C--TTCCCCEEEEETTTCCE
T ss_pred ccCCCCceEEEecCCccc--c--cCCCCeEEEEecCCCce
Confidence 123445666777766 3 67899999999988764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=254.26 Aligned_cols=234 Identities=15% Similarity=0.212 Sum_probs=191.7
Q ss_pred CcceeEeecCC--CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 167 DFYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 167 ~~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
...|.+++|+| +++|+++ .|+.|++||+.+......... .+...|.+++|+|++++|++|+.||.|++||+ +++.
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~ 196 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHE 196 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCE
T ss_pred CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCE
Confidence 45699999999 3566655 689999999986444333321 33578999999999999999999999999999 5778
Q ss_pred eEEecCCCccEEEEEeeC--C-EEEEEeCCCcEEEEECCCCC---ccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcE
Q 014934 243 VRTMEGHRLRVGALAWSS--S-LLSSGSRDKSILQRDIRAQE---DFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRL 315 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~~--~-~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I 315 (415)
+..+.+|...|.+++|++ . +|++|+.|+.|++||++... ..+..+ +|...|.+++|+| ++++|++++.|+.|
T Consensus 197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i 275 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEI 275 (383)
T ss_dssp EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEE
T ss_pred EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcE
Confidence 889999999999999994 4 89999999999999999732 234444 7999999999999 99999999999999
Q ss_pred EEEECCCCceeEEeccCC-----------------CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee---
Q 014934 316 FVWNQHSTQPVLKYCEHT-----------------AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--- 375 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~-----------------~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--- 375 (415)
++||+++++.+..+..|. ..+..++|+|++.. +++ .|+.|++||+.+++.+..+.
T Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s--~d~~i~iwd~~~~~~~~~l~~~~ 350 (383)
T 3ei3_B 276 RVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLN--DKRTIDIYDANSGGLVHQLRDPN 350 (383)
T ss_dssp EEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTT--CCCCEEEEETTTCCEEEEECBTT
T ss_pred EEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc---ccC--CCCeEEEEecCCCceeeeecCCC
Confidence 999999988776666543 34455667777664 444 89999999999999998886
Q ss_pred CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 376 TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 376 ~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+...+..++|+|++++|++ |+ |+.|+||++.+
T Consensus 351 ~~~~~~~~~~s~~g~~l~s--~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 351 AAGIISLNKFSPTGDVLAS--GM-GFNILIWNRED 382 (383)
T ss_dssp BCSCCCEEEECTTSSEEEE--EE-TTEEEEEECC-
T ss_pred CCceEEEEEEecCccEEEE--ec-CCcEEEEecCC
Confidence 3456777899999999988 54 89999999875
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-30 Score=249.66 Aligned_cols=240 Identities=19% Similarity=0.327 Sum_probs=200.2
Q ss_pred cceeEeecCC--CcEEEEE-cCCeEEEEECCCCCeEEeEe------------cCCCCCeEEEEEcC-CCCeEEEEECCCc
Q 014934 168 FYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCD------------LGIDDSVCSVGWAN-RNTHLAVGTSHGK 231 (415)
Q Consensus 168 ~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~~~~~------------~~~~~~V~~v~~sp-~g~~la~g~~dg~ 231 (415)
-.|++++|+| +++|+++ .|+.|++|++.+++...... .+|...|.+++|+| ++.+|++|+.||.
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 123 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT 123 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence 4689999998 5666666 68999999999887655443 14889999999999 7789999999999
Q ss_pred EEEEECCCCeeeEEecCCCccEEEEEeeC-----CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCC-E
Q 014934 232 VQIWDASRCKRVRTMEGHRLRVGALAWSS-----SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR-E 305 (415)
Q Consensus 232 V~iwd~~~~~~~~~l~~h~~~V~~l~~~~-----~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~ 305 (415)
|++||+.+++.+..+. +...+.++.|.+ .++++|+.||.|++||++.+. .+..+.+|...|.+++|+|+++ +
T Consensus 124 i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l 201 (408)
T 4a11_B 124 LKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-CSHILQGHRQEILAVSWSPRYDYI 201 (408)
T ss_dssp EEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-CCEEECCCCSCEEEEEECSSCTTE
T ss_pred EEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-eeeeecCCCCcEEEEEECCCCCcE
Confidence 9999999999888877 778899999973 389999999999999999876 5778889999999999999998 5
Q ss_pred EEEEeCCCcEEEEECCCCc-eeEEe---------------ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc
Q 014934 306 LASGGNDNRLFVWNQHSTQ-PVLKY---------------CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (415)
Q Consensus 306 lasg~~dg~I~iwd~~~~~-~~~~~---------------~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~ 369 (415)
|++|+.||.|++||++++. .+..+ ..|...|.+++|+|++. +|++++ .|+.|++||+.+++
T Consensus 202 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 202 LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVG--TDNRMRLWNSSNGE 278 (408)
T ss_dssp EEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTCC
T ss_pred EEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-EEEEec--CCCeEEEEECCCCc
Confidence 9999999999999998765 44444 57889999999999987 556665 79999999987653
Q ss_pred -----------------------------------------------EEEEee-CCCCEEEEEECCCCCeEEEEEecCCC
Q 014934 370 -----------------------------------------------HLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQN 401 (415)
Q Consensus 370 -----------------------------------------------~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg 401 (415)
.+..+. +...|.+++|+|++++|++ |+.||
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg 356 (408)
T 4a11_B 279 NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS--GSRDC 356 (408)
T ss_dssp BCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE--EETTS
T ss_pred cceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE--ECCCC
Confidence 333343 5678999999999999998 77899
Q ss_pred cEEEEECCCCccc
Q 014934 402 QIIVWRYPTMSKV 414 (415)
Q Consensus 402 ~I~vw~~~s~~~l 414 (415)
.|++|++.+.+.+
T Consensus 357 ~i~iw~~~~~~~~ 369 (408)
T 4a11_B 357 NILAWVPSLYEPV 369 (408)
T ss_dssp CEEEEEECC----
T ss_pred eEEEEeCCCCCcc
Confidence 9999999987653
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=267.61 Aligned_cols=237 Identities=15% Similarity=0.247 Sum_probs=212.0
Q ss_pred CcceeEeecCC-CcEEEEEcCCeEEEEECCCC----CeEEeEecCCCCC-eEEEEEcC--CCCeEEEEECCCcEEEEECC
Q 014934 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSS----KVTKLCDLGIDDS-VCSVGWAN--RNTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~----~~~~~~~~~~~~~-V~~v~~sp--~g~~la~g~~dg~V~iwd~~ 238 (415)
...+++++|+| +++|+++.++.|++|++.++ +....+. +|.+. |++++|+| ++++||+|+.||.|++||+.
T Consensus 18 ~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~ 96 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 96 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred cCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEe-cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCC
Confidence 34688999999 88999999999999999988 6666665 78899 99999999 99999999999999999997
Q ss_pred CC--------eeeEEecCCCccEEEEEee--CCEEEEEeCC----CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCC
Q 014934 239 RC--------KRVRTMEGHRLRVGALAWS--SSLLSSGSRD----KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR 304 (415)
Q Consensus 239 ~~--------~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 304 (415)
++ +.+..+..|...|.+++|+ +.+|++++.+ +.|++||. .. ....+.+|...|.+++|+|+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~-~~~~~~~~~~~v~~~~~~~~~~ 173 (615)
T 1pgu_A 97 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GN-SLGEVSGHSQRINACHLKQSRP 173 (615)
T ss_dssp EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CC-EEEECCSCSSCEEEEEECSSSS
T ss_pred CCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CC-cceeeecCCccEEEEEECCCCC
Confidence 44 6777888999999999999 4789999888 68888883 33 5778889999999999999998
Q ss_pred -EEEEEeCCCcEEEEECCCCceeEEeccCCC---cEEEEEEcCC-CCcEEEEEcCCCCCeEEEEECCCCcEEEEe-----
Q 014934 305 -ELASGGNDNRLFVWNQHSTQPVLKYCEHTA---AVKAIAWSPH-LHGLLASGGGTADRCIRFWNTTTNTHLSCM----- 374 (415)
Q Consensus 305 -~lasg~~dg~I~iwd~~~~~~~~~~~~h~~---~V~~l~~sp~-~~~llasggg~~d~~I~iwd~~t~~~~~~~----- 374 (415)
+|++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +. +|++++ .|+.|++||+.+++.+..+
T Consensus 174 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~ 250 (615)
T 1pgu_A 174 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE-FVITVG--SDRKISCFDGKSGEFLKYIEDDQE 250 (615)
T ss_dssp CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC-EEEEEE--TTCCEEEEETTTCCEEEECCBTTB
T ss_pred cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCC-EEEEEe--CCCeEEEEECCCCCEeEEeccccc
Confidence 899999999999999999999999999999 9999999999 76 666666 7999999999999999998
Q ss_pred eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 375 DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 375 ~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.+...|.++.|+ +++.|++ ++.|+.|++||+.+++.
T Consensus 251 ~~~~~v~~~~~~-~~~~l~~--~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 251 PVQGGIFALSWL-DSQKFAT--VGADATIRVWDVTTSKC 286 (615)
T ss_dssp CCCSCEEEEEES-SSSEEEE--EETTSEEEEEETTTTEE
T ss_pred ccCCceEEEEEc-CCCEEEE--EcCCCcEEEEECCCCcE
Confidence 678899999999 9999998 77899999999987654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-30 Score=244.31 Aligned_cols=237 Identities=14% Similarity=0.231 Sum_probs=206.7
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC-----CcEEEEECCC
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-----GKVQIWDASR 239 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d-----g~V~iwd~~~ 239 (415)
...|.+++|+| +++|+++ .|+.|++||+.+++....+. +...|.+++|+|++++|++++.+ |.|.+||+..
T Consensus 74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~ 151 (369)
T 3zwl_B 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER 151 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecC
Confidence 34699999999 6666666 68999999999999888775 67899999999999999999999 9999999865
Q ss_pred Ce-----------eeEEecCCCc--cEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCC
Q 014934 240 CK-----------RVRTMEGHRL--RVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR 304 (415)
Q Consensus 240 ~~-----------~~~~l~~h~~--~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 304 (415)
.. .+..+..|.. .+.+++|+ +.+|++++.||.|++||++........+..|...|.+++|+|+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 231 (369)
T 3zwl_B 152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT 231 (369)
T ss_dssp CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred CccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC
Confidence 42 3444556666 89999998 579999999999999999985557888889999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCC--------------eEEEEECCCCcE
Q 014934 305 ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR--------------CIRFWNTTTNTH 370 (415)
Q Consensus 305 ~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~--------------~I~iwd~~t~~~ 370 (415)
+|++++.|+.|++||+++++.+..+. +...+..++|+|++..+++.+ .++ .|++||+.+++.
T Consensus 232 ~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 307 (369)
T 3zwl_B 232 YFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGG---GQEAKDVTTTSANEGKFEARFYHKIFEEE 307 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE---CCC-------------CEEEEEETTTCCE
T ss_pred EEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEee---cCCCceEEEEecCCCcceeEEEecCCCcc
Confidence 99999999999999999999988885 788999999999998555544 355 899999999999
Q ss_pred EEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 371 LSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 371 ~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+..+. +...|.+++|+|++++|++ ++.||.|++|++...
T Consensus 308 ~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 308 IGRVQGHFGPLNTVAISPQGTSYAS--GGEDGFIRLHHFEKS 347 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEE--EETTSEEEEEEECHH
T ss_pred hhheecccCcEEEEEECCCCCEEEE--EcCCCeEEEEECccc
Confidence 88886 6788999999999999999 778999999999764
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=265.09 Aligned_cols=242 Identities=16% Similarity=0.187 Sum_probs=192.0
Q ss_pred CcceeEeecCC--CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCCe
Q 014934 167 DFYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 167 ~~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
+..|++|+|+| .++||+| .||.|+|||+.+++......+ +|.+.|++|+|+| ++.+|++|+.||+|+|||+++..
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~ 198 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI 198 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence 34599999998 5678877 589999999988876555543 7999999999998 68999999999999999998765
Q ss_pred eeEEecC--CCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCC-EEEEEeCCCcEE
Q 014934 242 RVRTMEG--HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR-ELASGGNDNRLF 316 (415)
Q Consensus 242 ~~~~l~~--h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~lasg~~dg~I~ 316 (415)
....... +...+.+++|+ +.+|++|+.||.|++||++.. .+..+.+|...|.+++|+|++. +|++|+.|+.|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~ 276 (435)
T 4e54_B 199 LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276 (435)
T ss_dssp EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence 4433333 34567888998 579999999999999999754 3567889999999999999876 788999999999
Q ss_pred EEECCCCceeE---EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CC------CCEEEEEEC
Q 014934 317 VWNQHSTQPVL---KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TG------SQVCNLVWS 386 (415)
Q Consensus 317 iwd~~~~~~~~---~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~------~~V~~l~~s 386 (415)
|||+++.+... ...+|...|.+++|+|++. +|++++ .|+.|++||+.+++....+. +. ..+..+.|+
T Consensus 277 iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (435)
T 4e54_B 277 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTD--QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353 (435)
T ss_dssp EEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEE--SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred EEecccccccceEEEeeeccccccceeECCCCC-eeEEEc--CCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence 99998865433 3357999999999999997 666666 89999999999988776653 11 123456777
Q ss_pred CCCCeEEEEE----------ecCCCcEEEEECCCCcc
Q 014934 387 KNVNELVSTH----------GYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 387 ~~~~~l~s~~----------g~~dg~I~vw~~~s~~~ 413 (415)
+++..++++. +..++.|++||..+++.
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~ 390 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM 390 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence 7777766631 12346799999988764
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-30 Score=263.50 Aligned_cols=230 Identities=23% Similarity=0.442 Sum_probs=201.6
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
..+.+++|+| +..|+++ .|+.|++||.....+.. +. +|...|.+++|+|+|++|++|+.||.|++||. +++.+..
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~-~~-~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~ 380 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT-LT-GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 380 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEE-EC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEE-Ee-CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEE
Confidence 3588999999 6666666 67899999987655433 33 78899999999999999999999999999995 5678888
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+.+|...|.+++|+ +.+|++++.|+.|++||... . .+..+.+|...|.+++|+|++++|++++.|+.|++||. ++
T Consensus 381 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~ 457 (577)
T 2ymu_A 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NG 457 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-C-EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TS
T ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-C-EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CC
Confidence 99999999999998 57999999999999999643 3 57788899999999999999999999999999999996 56
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCc
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
+.+..+.+|...|.+++|+|+++ +|++++ .|+.|++||. +++++..+. |...|.+++|+|++++|++ ++.|+.
T Consensus 458 ~~~~~~~~~~~~v~~~~~spd~~-~las~~--~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s--~~~dg~ 531 (577)
T 2ymu_A 458 QLLQTLTGHSSSVRGVAFSPDGQ-TIASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS--ASDDKT 531 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSC-EEEEEE--TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEE--EETTSE
T ss_pred CEEEEEcCCCCCEEEEEEcCCCC-EEEEEe--CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEE--EECcCE
Confidence 78888899999999999999997 677776 8999999995 677777776 6788999999999999998 778999
Q ss_pred EEEEECC
Q 014934 403 IIVWRYP 409 (415)
Q Consensus 403 I~vw~~~ 409 (415)
|+|||++
T Consensus 532 v~lwd~~ 538 (577)
T 2ymu_A 532 VKLWNRN 538 (577)
T ss_dssp EEEECTT
T ss_pred EEEEeCC
Confidence 9999974
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=263.74 Aligned_cols=241 Identities=13% Similarity=0.166 Sum_probs=197.5
Q ss_pred CcceeEeecCC--CcEEEEE-cCCeEEEEECCC---CCeE-EeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC-
Q 014934 167 DFYLNLVDWSS--HNVLAVG-LGNCVYLWNACS---SKVT-KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS- 238 (415)
Q Consensus 167 ~~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~---~~~~-~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~- 238 (415)
.-.|++++|+| +.+|++| .|+.|++||+.+ +... .....+|...|++++|+|++++|++|+.||.|++||+.
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH 142 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence 34699999999 4566666 689999999876 4422 13333688999999999999999999999999999994
Q ss_pred --CCeeeEEecC------------CCccEEEEEee----CCEEEEEeCCCcEEEEECCCCCccEEEecc--ccCCeEEEE
Q 014934 239 --RCKRVRTMEG------------HRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQEDFVSKLSG--HKSEVCGLK 298 (415)
Q Consensus 239 --~~~~~~~l~~------------h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~ 298 (415)
+++.+..+.+ +...+.++.+. +.+|++|+.||.|++||+++.. .+..+.+ |...|.+++
T Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~~~ 221 (437)
T 3gre_A 143 YQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-RLQIIENSPRHGAVSSIC 221 (437)
T ss_dssp EEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-EEEEEECCGGGCCEEEEE
T ss_pred ccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-eeEEEccCCCCCceEEEE
Confidence 4444433321 45667777744 5799999999999999999887 5777777 899999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCcEEEEEEcCC---CCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 299 WSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPH---LHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 299 ~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~---~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
|+|++++|++|+.||.|++||+++++++..+. .|...|.+++|+|. ...+|++++ .|+.|++||+.+++++..+
T Consensus 222 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~ 299 (437)
T 3gre_A 222 IDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS--SKTFLTIWNFVKGHCQYAF 299 (437)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES--TTEEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc--CCCcEEEEEcCCCcEEEEE
Confidence 99999999999999999999999999998886 78889999988764 223777776 8999999999999988877
Q ss_pred e---------------------------CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 375 D---------------------------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 375 ~---------------------------~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
. +...|.+++|+ ++++|++ |+.|+.|++||+.+++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s--~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 300 INSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT--DEATSSIVMFSLNELSS 362 (437)
T ss_dssp ESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE--EGGGTEEEEEETTCGGG
T ss_pred EcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe--cCCCCeEEEEECCCccc
Confidence 5 23347889999 7788888 78999999999988764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-30 Score=253.72 Aligned_cols=230 Identities=20% Similarity=0.398 Sum_probs=205.5
Q ss_pred cceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 168 FYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 168 ~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
-.+.+++|....+++++.|+.|++||..+++....+. +|.+.|++++| ++++|++|+.||.|++||+.+++.+..+.
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 210 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI 210 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc-CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence 3588898865556666678999999999999888776 88999999999 78999999999999999999999999999
Q ss_pred CCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCcc--EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q 014934 248 GHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDF--VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP 325 (415)
Q Consensus 248 ~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~ 325 (415)
+|...|.+++|+++.+++|+.||.|++||++..... ...+.+|...|.+++| ++++|++|+.||.|++||+++++.
T Consensus 211 ~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~ 288 (435)
T 1p22_A 211 HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF 288 (435)
T ss_dssp CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE
T ss_pred CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE
Confidence 999999999999999999999999999999987633 2677899999999999 788999999999999999999999
Q ss_pred eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEE
Q 014934 326 VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQII 404 (415)
Q Consensus 326 ~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~ 404 (415)
+..+.+|...|.+++|+ +. ++++|+ .|+.|++||+.+++++..+. +...|.+++| ++..|++ |+.||.|+
T Consensus 289 ~~~~~~~~~~v~~~~~~--~~-~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s--g~~dg~i~ 359 (435)
T 1p22_A 289 VRTLNGHKRGIACLQYR--DR-LVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS--GAYDGKIK 359 (435)
T ss_dssp EEEEECCSSCEEEEEEE--TT-EEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEE--EETTSCEE
T ss_pred EEEEcCCCCcEEEEEeC--CC-EEEEEe--CCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEE--EeCCCcEE
Confidence 99999999999999995 33 777776 89999999999999998887 6678999999 7888888 78999999
Q ss_pred EEECCCC
Q 014934 405 VWRYPTM 411 (415)
Q Consensus 405 vw~~~s~ 411 (415)
+||+.+.
T Consensus 360 vwd~~~~ 366 (435)
T 1p22_A 360 VWDLVAA 366 (435)
T ss_dssp EEEHHHH
T ss_pred EEECCCC
Confidence 9998643
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-30 Score=243.53 Aligned_cols=202 Identities=18% Similarity=0.340 Sum_probs=175.5
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC--CeeeEEecCCCccEEEEEee----CCEEEEEeCCCcEEEEECCC
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR--CKRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRA 279 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~--~~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~ 279 (415)
+|.+.|++++|+|+|++||+|+.||+|+|||+.. .+.+.++.+|.+.|.+++|+ +++|++|+.|++|++||++.
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 7899999999999999999999999999999974 46788999999999999996 47999999999999999987
Q ss_pred CC-ccEEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCcEEEEEEcCCC---------
Q 014934 280 QE-DFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHSTQ--PVLKYCEHTAAVKAIAWSPHL--------- 345 (415)
Q Consensus 280 ~~-~~~~~~~~h~~~V~~l~~spd--g~~lasg~~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~sp~~--------- 345 (415)
+. ..+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||++++. ....+.+|...|.+++|+|++
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 166 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---------
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCC
Confidence 64 245667889999999999997 8999999999999999998763 245677999999999999973
Q ss_pred ---CcEEEEEcCCCCCeEEEEECCCCc----EEEEee-CCCCEEEEEECCCC---CeEEEEEecCCCcEEEEECCCC
Q 014934 346 ---HGLLASGGGTADRCIRFWNTTTNT----HLSCMD-TGSQVCNLVWSKNV---NELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 346 ---~~llasggg~~d~~I~iwd~~t~~----~~~~~~-~~~~V~~l~~s~~~---~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
..+|++++ .|+.|++||+.+++ .+..+. |...|.+++|+|++ .+|++ |+.|+.|+||++.+.
T Consensus 167 ~~~~~~l~sgs--~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las--~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 167 TKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS--VSQDRTCIIWTQDNE 239 (297)
T ss_dssp ---CCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEEEEEESST
T ss_pred CCCcceEEEEc--CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE--EECCCcEEEEEeCCC
Confidence 24788887 89999999998876 444554 67889999999995 67777 779999999998763
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.6e-31 Score=256.60 Aligned_cols=215 Identities=20% Similarity=0.391 Sum_probs=176.1
Q ss_pred EECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee------------
Q 014934 192 WNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS------------ 259 (415)
Q Consensus 192 wd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~------------ 259 (415)
|+..+..+...+. +|.+.|++++|+|+|++|++|+.||+|+|||+.+++.+..+..|...|.+++|+
T Consensus 51 ~~~~~~~~~~~l~-gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d 129 (380)
T 3iz6_a 51 FNPTDLVCCRTLQ-GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD 129 (380)
T ss_dssp CCCCCCEEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSS
T ss_pred cccceeEEeeccc-ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence 3344444445554 899999999999999999999999999999999888777776666555555543
Q ss_pred -------------------------------------C---CEEEEEeCCCcEEEEECCCCCccEEEe-----ccccCCe
Q 014934 260 -------------------------------------S---SLLSSGSRDKSILQRDIRAQEDFVSKL-----SGHKSEV 294 (415)
Q Consensus 260 -------------------------------------~---~~l~sgs~dg~I~iwd~~~~~~~~~~~-----~~h~~~V 294 (415)
+ ..|++|+.|++|++||++++. .+..+ .+|...|
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ-RISIFGSEFPSGHTADV 208 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC-EEEEECCCSSSSCCSCE
T ss_pred CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc-EEEEeecccCCCCccCe
Confidence 1 247777777777777777665 34444 5788999
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEECC-CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE
Q 014934 295 CGLKWSY-DNRELASGGNDNRLFVWNQH-STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS 372 (415)
Q Consensus 295 ~~l~~sp-dg~~lasg~~dg~I~iwd~~-~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~ 372 (415)
.+++|++ ++++|++|+.|+.|++||++ ..+.+..+.+|...|.+++|+|++. +|++++ .|+.|++||+++++.+.
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s--~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGS--DDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEEC--SSSCEEEEETTTTEEEE
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEc--CCCeEEEEECCCCcEEE
Confidence 9999987 88999999999999999998 5578889999999999999999987 777777 89999999999999888
Q ss_pred EeeCC--------CCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 373 CMDTG--------SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 373 ~~~~~--------~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.+... ..|.+++|+|+|++|++ |+.||.|++||+.+.+.
T Consensus 286 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--g~~dg~i~vwd~~~~~~ 332 (380)
T 3iz6_a 286 VYNREPDRNDNELPIVTSVAFSISGRLLFA--GYSNGDCYVWDTLLAEM 332 (380)
T ss_dssp EECCCCSSSCCSSCSCSEEEECSSSSEEEE--ECTTSCEEEEETTTCCE
T ss_pred EecccccccccccCceEEEEECCCCCEEEE--EECCCCEEEEECCCCce
Confidence 77532 23889999999999999 88999999999876553
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-29 Score=250.39 Aligned_cols=239 Identities=25% Similarity=0.419 Sum_probs=205.4
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC-eee
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC-KRV 243 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~-~~~ 243 (415)
..+|++|+|+| +++|++| .|+.|+|||+.+++....+. +|...|.++.| ++.+|++|+.|+.+.+||.... ..+
T Consensus 147 ~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~-~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~ 223 (420)
T 4gga_A 147 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHV 223 (420)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe-CCCCceEEEee--CCCEEEEEeCCCceeEeeecccceee
Confidence 45799999999 7888877 58999999999999888776 88899999887 4789999999999999998764 566
Q ss_pred EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc---cEEEeccccCCeEEEEEeCCC-CEEEE--EeCCCcE
Q 014934 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED---FVSKLSGHKSEVCGLKWSYDN-RELAS--GGNDNRL 315 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg-~~las--g~~dg~I 315 (415)
..+.+|...+..+.|. +.++++++.|+.|++||...+.. .+.....|...|.+++|+|++ .++++ |+.|+.|
T Consensus 224 ~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I 303 (420)
T 4gga_A 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303 (420)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred EEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence 7889999999999998 58999999999999999987642 356677899999999999965 45555 4579999
Q ss_pred EEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEE
Q 014934 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s 394 (415)
++||+.+++++..+..| ..+.++.|+|++..+++++ |..|+.|++||+.+++++..+. |...|.+++|+|+|++|++
T Consensus 304 ~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~s-g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S 381 (420)
T 4gga_A 304 RIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGH-GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 381 (420)
T ss_dssp EEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEE-CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred EEEeCCccccceeeccc-cceeeeeecCCCCeEEEEE-ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 99999999998888554 5789999999998666554 4579999999999999999887 6789999999999999999
Q ss_pred EEecCCCcEEEEECCCCc
Q 014934 395 THGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s~~ 412 (415)
|+.|++|+|||+....
T Consensus 382 --~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 382 --AAADETLRLWRCFELD 397 (420)
T ss_dssp --EETTTEEEEECCSCSS
T ss_pred --EecCCeEEEEECCCCC
Confidence 7789999999987643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.1e-30 Score=256.46 Aligned_cols=235 Identities=17% Similarity=0.167 Sum_probs=200.7
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCC---eEEeEec---------------------------------------
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSK---VTKLCDL--------------------------------------- 205 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~---~~~~~~~--------------------------------------- 205 (415)
.+++++|++ +++|+++.++.|++||+.+++ ....+..
T Consensus 6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred cEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 467899999 778888899999999999998 4444331
Q ss_pred --------------CCCCCeEEEEEcCCCCeE-EEEECCCcEEEEECC--CCeeeEEec--CCCccEEEEEee--CCEEE
Q 014934 206 --------------GIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDAS--RCKRVRTME--GHRLRVGALAWS--SSLLS 264 (415)
Q Consensus 206 --------------~~~~~V~~v~~sp~g~~l-a~g~~dg~V~iwd~~--~~~~~~~l~--~h~~~V~~l~~~--~~~l~ 264 (415)
+|.+.|++++|+|+|++| ++|+.||.|+|||+. +++.+..+. .|...|.+++|+ +.+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI 165 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE
Confidence 123369999999999996 889999999999999 888888776 577899999998 47999
Q ss_pred EEeCCCcEEEEECCCCCc---cEEEeccccCCeEEEEEeCC---CCEEEEEeCCCcEEEEECCCCceeEE-eccCCCcEE
Q 014934 265 SGSRDKSILQRDIRAQED---FVSKLSGHKSEVCGLKWSYD---NRELASGGNDNRLFVWNQHSTQPVLK-YCEHTAAVK 337 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spd---g~~lasg~~dg~I~iwd~~~~~~~~~-~~~h~~~V~ 337 (415)
+|+.||.|++|++..... ....+.+|...|.+++|+|+ +++|++|+.|+.|++||+.+++.+.. +.+|...|.
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~ 245 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVS 245 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEE
T ss_pred EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceE
Confidence 999999999999987652 22366789999999999999 99999999999999999999988877 558999999
Q ss_pred EEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC--------------------------CCCEEEEEECCCCCe
Q 014934 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--------------------------GSQVCNLVWSKNVNE 391 (415)
Q Consensus 338 ~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~--------------------------~~~V~~l~~s~~~~~ 391 (415)
+++|+ ++. +|++++ .|+.|++||+.+++++..+.. ...|..+.|+|++++
T Consensus 246 ~~~~s-d~~-~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 246 SICCG-KDY-LLLSAG--GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp EEEEC-STT-EEEEEE--SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred EEEEC-CCC-EEEEEe--CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 99999 776 777776 899999999999998887752 246899999999999
Q ss_pred EEEEEecCCCcEEEEEC
Q 014934 392 LVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~ 408 (415)
|+++ +..++.|+||++
T Consensus 322 l~~~-~~~d~~i~iw~~ 337 (450)
T 2vdu_B 322 VAFF-VEATKCIIILEM 337 (450)
T ss_dssp EEEE-ETTCSEEEEEEE
T ss_pred EEEE-ECCCCeEEEEEe
Confidence 9984 237899999999
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-30 Score=252.99 Aligned_cols=234 Identities=16% Similarity=0.238 Sum_probs=205.2
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCC---------------eEEEEEcCCCCeEEEEECC
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDS---------------VCSVGWANRNTHLAVGTSH 229 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~---------------V~~v~~sp~g~~la~g~~d 229 (415)
...+.+++|+| ++.|+++ .++.|++||+.+++....+. .+... +.+++|++++ .+++++.+
T Consensus 149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 226 (425)
T 1r5m_A 149 RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE-LKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPK 226 (425)
T ss_dssp CSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC-CC---------------CCCBSCCEEEETT-EEEEECGG
T ss_pred CccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee-ccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCC
Confidence 34689999999 5655555 68999999999998877765 33344 8999999875 58889999
Q ss_pred CcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEE
Q 014934 230 GKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELA 307 (415)
Q Consensus 230 g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 307 (415)
|.|++||+.+++.+..+..|...|.+++|+ +.+|++++.||.|++||++... ....+.+|...|.+++|+|++ +|+
T Consensus 227 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~-~l~ 304 (425)
T 1r5m_A 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVGDD-KVI 304 (425)
T ss_dssp GCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEETTT-EEE
T ss_pred CeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECCCC-EEE
Confidence 999999999999999999999999999998 5799999999999999999876 567778899999999999999 999
Q ss_pred EEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc------------------
Q 014934 308 SGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT------------------ 369 (415)
Q Consensus 308 sg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~------------------ 369 (415)
+++.|+.|++||+++++.+..+..|...|.+++|+|++. +|++++ .|+.|++||+.+++
T Consensus 305 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (425)
T 1r5m_A 305 SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQ-KYAVAF--MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLP 381 (425)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSS-EEEEEE--TTSCEEEEECHHHHC--------------CEE
T ss_pred EEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCC-EEEEEE--CCCeEEEEECCCCccceeeeecccccccCccc
Confidence 999999999999999999999999999999999999987 666666 79999999999888
Q ss_pred --EEEEeeCC--C-CEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 370 --HLSCMDTG--S-QVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 370 --~~~~~~~~--~-~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.+..+... . .|.+++|+|++++|++ ++.||.|++|+++
T Consensus 382 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 382 IPLYASYQSSQDNDYIFDLSWNCAGNKISV--AYSLQEGSVVAIP 424 (425)
T ss_dssp CCEEEEECCTTCCCCEEEEEECTTSSEEEE--EESSSCCEEEECC
T ss_pred chhhhhhcCcccCCceEEEEccCCCceEEE--EecCceEEEEeec
Confidence 77777643 3 9999999999999998 7789999999986
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.7e-30 Score=246.12 Aligned_cols=208 Identities=15% Similarity=0.291 Sum_probs=187.2
Q ss_pred EeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECC
Q 014934 201 KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIR 278 (415)
Q Consensus 201 ~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~ 278 (415)
..+. +|.+.|++++|+|++++||+|+.||+|+|||..+++....+..|...|.+++|+ +..|++|+.|+.|.+|++.
T Consensus 58 ~~l~-gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 58 RTLK-GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp EEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred EEec-CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence 3344 899999999999999999999999999999999999888999999999999998 5899999999999999986
Q ss_pred CCC-----ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCC-CcEEEEE
Q 014934 279 AQE-----DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL-HGLLASG 352 (415)
Q Consensus 279 ~~~-----~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~-~~llasg 352 (415)
... .....+.+|...|.+++|+|++..|++|+.|+.|++||+++++.+..+.+|...|.+++|+|.. ..+|+++
T Consensus 137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sg 216 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216 (354)
T ss_dssp CCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred ccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence 532 2356677899999999999999999999999999999999999999999999999999999863 2488888
Q ss_pred cCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 353 GGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 353 gg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+ .|+.|++||+++++++..+. |...|.+++|+|++..|++ |+.|+.|++||+.+.+.
T Consensus 217 s--~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~D~~v~lwd~~~~~~ 274 (354)
T 2pbi_B 217 G--CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFAS--GSDDATCRLYDLRADRE 274 (354)
T ss_dssp E--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEE
T ss_pred e--CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEE--EeCCCeEEEEECCCCcE
Confidence 7 89999999999999988886 6788999999999999998 78999999999987543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-29 Score=235.58 Aligned_cols=231 Identities=19% Similarity=0.266 Sum_probs=197.7
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCC---CeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSS---KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~---~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
...+.+++|+| +++|+++ .++.|++|++... +....+. +|...|.++.| ++++|++|+.||.|++|| .++
T Consensus 59 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~ 133 (313)
T 3odt_A 59 QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLI-GHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGS 133 (313)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTE
T ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchh-hcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCc
Confidence 34689999999 6666666 6899999998765 3333333 78899999999 678999999999999999 677
Q ss_pred eeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEecc-ccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 014934 242 RVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSG-HKSEVCGLKWSYDNRELASGGNDNRLFV 317 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~lasg~~dg~I~i 317 (415)
.+..+..|...|.+++|. ++.|++++.||.|++||.. .....+.. |...|.+++|+|++. |++|+.|+.|++
T Consensus 134 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i 209 (313)
T 3odt_A 134 LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKL 209 (313)
T ss_dssp EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEE
T ss_pred EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEE
Confidence 888899999999999996 6899999999999999943 24556665 899999999999998 999999999999
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEE
Q 014934 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~ 396 (415)
||+++++.+..+..|...|.+++|+|++. +++++ .|+.|++||+.+++.+..+. +...|.+++|+|+++ +++
T Consensus 210 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~-- 282 (313)
T 3odt_A 210 VDMHTGDVLRTYEGHESFVYCIKLLPNGD--IVSCG--EDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIV-- 282 (313)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECTTSC--EEEEE--TTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEE--
T ss_pred EECCchhhhhhhhcCCceEEEEEEecCCC--EEEEe--cCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEE--
Confidence 99999999999999999999999999983 45555 79999999999999988887 456899999999998 555
Q ss_pred ecCCCcEEEEECCCCcc
Q 014934 397 GYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 397 g~~dg~I~vw~~~s~~~ 413 (415)
++.||.|++|++.+.+.
T Consensus 283 ~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 283 GSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp EETTSCEEEEESCGGGC
T ss_pred EeCCCcEEEEeCCCCce
Confidence 56899999999987653
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=253.55 Aligned_cols=237 Identities=16% Similarity=0.281 Sum_probs=200.9
Q ss_pred CcceeEeecCC--CcEEEEE-cCCeEEEEECCCC-------CeEEeEecCCCCCeEEEEEcCCC-CeEEEEECCCcEEEE
Q 014934 167 DFYLNLVDWSS--HNVLAVG-LGNCVYLWNACSS-------KVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIW 235 (415)
Q Consensus 167 ~~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~-------~~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iw 235 (415)
.-.|++++|+| +++|+++ .|+.|++|++.++ +....+. +|...|++++|+|++ .+|++|+.||.|++|
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 159 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETTSCEEEE
T ss_pred CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCCCEEEEE
Confidence 34699999998 5677776 5899999999987 3444454 789999999999998 699999999999999
Q ss_pred ECCCCeeeEEe--cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEe-ccccCC-eEEEEEeCCCCEEEEE
Q 014934 236 DASRCKRVRTM--EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKL-SGHKSE-VCGLKWSYDNRELASG 309 (415)
Q Consensus 236 d~~~~~~~~~l--~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~h~~~-V~~l~~spdg~~lasg 309 (415)
|+.+++.+..+ .+|...|.+++|+ +.+|++++.||.|++||++++. .+..+ .+|... +.++.|+|++++|++|
T Consensus 160 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 238 (402)
T 2aq5_A 160 DVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT-VVAEKDRPHEGTRPVHAVFVSEGKILTTG 238 (402)
T ss_dssp ETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-EEEEEECSSCSSSCCEEEECSTTEEEEEE
T ss_pred ECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-eeeeeccCCCCCcceEEEEcCCCcEEEEe
Confidence 99999999999 8899999999998 5799999999999999999887 45666 688776 8999999999999999
Q ss_pred ---eCCCcEEEEECCCCce-eEEec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE----EEEeeCCCCE
Q 014934 310 ---GNDNRLFVWNQHSTQP-VLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH----LSCMDTGSQV 380 (415)
Q Consensus 310 ---~~dg~I~iwd~~~~~~-~~~~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~----~~~~~~~~~V 380 (415)
+.|+.|++||+++++. +.... .|...|.+++|+|++..++++++ .|+.|++||+.+++. +..+.+...|
T Consensus 239 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~--~dg~i~i~d~~~~~~~~~~l~~~~~~~~v 316 (402)
T 2aq5_A 239 FSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGK--GDSSIRYFEITSEAPFLHYLSMFSSKESQ 316 (402)
T ss_dssp ECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEET--TCSCEEEEEECSSTTCEEEEEEECCSSCC
T ss_pred ccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEc--CCCeEEEEEecCCCcceEeecccccCCcc
Confidence 7999999999998654 33332 57788999999999997777776 799999999999873 3334456889
Q ss_pred EEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 381 ~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
.+++|+|++..+++ .++.+++|++.+.
T Consensus 317 ~~~~~sp~~~~~~s----~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 317 RGMGYMPKRGLEVN----KCEIARFYKLHER 343 (402)
T ss_dssp SEEEECCGGGSCGG----GTEEEEEEEEETT
T ss_pred cceEEeccccccee----cceeEEEEEcCCC
Confidence 99999999998875 3569999998764
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-29 Score=248.58 Aligned_cols=232 Identities=19% Similarity=0.340 Sum_probs=208.7
Q ss_pred CcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
...+.+++|+++.+++++.|+.|++||+.+++....+. +|...|.+++| ++++|++|+.||.|++||+.+++.+..+
T Consensus 199 ~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 275 (445)
T 2ovr_B 199 TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL 275 (445)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEE-CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEE
T ss_pred CCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEe
Confidence 34688999987777777789999999999999887776 78899999999 7899999999999999999999999999
Q ss_pred cCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Q 014934 247 EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV 326 (415)
Q Consensus 247 ~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~ 326 (415)
.+|...|.+++|++..+++|+.||.|++||++++. .+..+.+|...+.++.++ +++|++|+.||.|++||+++++.+
T Consensus 276 ~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~ 352 (445)
T 2ovr_B 276 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCL 352 (445)
T ss_dssp CCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC-EEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEE
T ss_pred cCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCC-EEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999999999999999999999999999999887 578888999999988875 679999999999999999999999
Q ss_pred EEecc---CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe------eCCCCEEEEEECCCCCeEEEEEe
Q 014934 327 LKYCE---HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM------DTGSQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 327 ~~~~~---h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~------~~~~~V~~l~~s~~~~~l~s~~g 397 (415)
..+.. |...|.+++|++ .++++++ .|+.|++||+.+++.+..+ .+...|.+++|+|++..|++ |
T Consensus 353 ~~~~~~~~~~~~v~~~~~~~---~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~--~ 425 (445)
T 2ovr_B 353 QTLQGPNKHQSAVTCLQFNK---NFVITSS--DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV--G 425 (445)
T ss_dssp EEECSTTSCSSCEEEEEECS---SEEEEEE--TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE--E
T ss_pred EEEccCCCCCCCEEEEEECC---CEEEEEe--CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEE--c
Confidence 99876 889999999974 3777776 8999999999999998888 35678999999999999988 7
Q ss_pred cCCCc----EEEEECCCC
Q 014934 398 YSQNQ----IIVWRYPTM 411 (415)
Q Consensus 398 ~~dg~----I~vw~~~s~ 411 (415)
+.||. |.|||+..-
T Consensus 426 ~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 426 SRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp CSSSSSCCEEEEEECCCC
T ss_pred ccCCCCccEEEEEECCCC
Confidence 88887 999999864
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=245.10 Aligned_cols=234 Identities=13% Similarity=0.117 Sum_probs=197.4
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCC----eEEeEecCCCCCeEEEEEcCCCC-eEEEEECCCcEEEEEC-CC
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK----VTKLCDLGIDDSVCSVGWANRNT-HLAVGTSHGKVQIWDA-SR 239 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~----~~~~~~~~~~~~V~~v~~sp~g~-~la~g~~dg~V~iwd~-~~ 239 (415)
-.|.+++|+| +.+|+++ .|+.|++|++.+++ ..... .|...|++++|+|+++ +|++|+.||.|++||+ .+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 89 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS 89 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccC
Confidence 4699999999 6666665 68999999998887 43333 7889999999999999 9999999999999999 77
Q ss_pred CeeeEEecC--CCccEEEEEee-CCEEEEEeCCCcEEEEECCC---------CCccEEEeccccCCeEEEEEeCCCCEEE
Q 014934 240 CKRVRTMEG--HRLRVGALAWS-SSLLSSGSRDKSILQRDIRA---------QEDFVSKLSGHKSEVCGLKWSYDNRELA 307 (415)
Q Consensus 240 ~~~~~~l~~--h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~---------~~~~~~~~~~h~~~V~~l~~spdg~~la 307 (415)
++. ..+.+ |...|.+++|+ ++.|++++.|+.|++||++. .. .+..+. |...|.+++|+|++ |+
T Consensus 90 ~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~--l~ 164 (342)
T 1yfq_A 90 PSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-NSNNTK-VKNKIFTMDTNSSR--LI 164 (342)
T ss_dssp SSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES-CSSSSS-SCCCEEEEEECSSE--EE
T ss_pred Cce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCC-eeeEEe-eCCceEEEEecCCc--EE
Confidence 654 67888 99999999999 69999999999999999986 43 333444 88999999999887 99
Q ss_pred EEeCCCcEEEEECCC-Cc--eeEEeccCCCcEEEEEEcC-CCCcEEEEEcCCCCCeEEEEECCCC------cEEEEee-C
Q 014934 308 SGGNDNRLFVWNQHS-TQ--PVLKYCEHTAAVKAIAWSP-HLHGLLASGGGTADRCIRFWNTTTN------THLSCMD-T 376 (415)
Q Consensus 308 sg~~dg~I~iwd~~~-~~--~~~~~~~h~~~V~~l~~sp-~~~~llasggg~~d~~I~iwd~~t~------~~~~~~~-~ 376 (415)
+++.|+.|++||+++ +. .......|...|.+++|+| ++. ++++++ .|+.|++|++..+ +.+..+. +
T Consensus 165 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEe--cCCcEEEEEEcCCCcccccccceeeecc
Confidence 999999999999988 54 3334457889999999999 887 666666 7999999999886 6666665 3
Q ss_pred C---------CCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 377 G---------SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 377 ~---------~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
. ..|.+++|+|++++|++ |+.||.|++||+.+++.
T Consensus 242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIEFSPRHKFLYT--AGSDGIISCWNLQTRKK 285 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEE
T ss_pred cccccccccceeEEEEEEcCCCCEEEE--ecCCceEEEEcCccHhH
Confidence 2 38999999999999998 77899999999998764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=265.67 Aligned_cols=234 Identities=11% Similarity=0.083 Sum_probs=188.9
Q ss_pred ceeEeecCCC-------cEEEEE-cCCeEEEEECCCCCeE-----------EeEecCCCCCeEEEEEcCCCCeEEEEECC
Q 014934 169 YLNLVDWSSH-------NVLAVG-LGNCVYLWNACSSKVT-----------KLCDLGIDDSVCSVGWANRNTHLAVGTSH 229 (415)
Q Consensus 169 ~i~~l~ws~~-------~~la~~-~d~~V~iwd~~~~~~~-----------~~~~~~~~~~V~~v~~sp~g~~la~g~~d 229 (415)
.|+.++|+|. .+||++ .|++|+|||+.+++.. ..+. +|...|++++|++++ .||+|+.|
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~~-~lasgs~D 286 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS-LADSLITTFDFLSPT-TVVCGFKN 286 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSSS-EEEEEETT
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE-cCCCCEEEEEecCCC-eEEEEeCC
Confidence 4889999984 577766 6899999999876421 1222 688999999999864 89999999
Q ss_pred CcEEEEECCCCe-eeEEecCCCccEEEE--Eee--C-CEEEEEeCCCcEEEEECCCCCccEEEeccccC--CeEEEEEeC
Q 014934 230 GKVQIWDASRCK-RVRTMEGHRLRVGAL--AWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKS--EVCGLKWSY 301 (415)
Q Consensus 230 g~V~iwd~~~~~-~~~~l~~h~~~V~~l--~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~--~V~~l~~sp 301 (415)
|+|++||+.++. ....+.+|...|.+| +|+ + .+|++|+.|++|++||+++.. ....+.+|.. .|.+++|+|
T Consensus 287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~-~~~~~~~~~~~~~v~~v~fsp 365 (524)
T 2j04_B 287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA-TTKTTVSRFRGSNLVPVVYCP 365 (524)
T ss_dssp SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH-HHCEEEEECSCCSCCCEEEET
T ss_pred CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC-cccccccccccCcccceEeCC
Confidence 999999998764 456688999999999 455 3 689999999999999999876 3445556653 588999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-----c-------
Q 014934 302 DNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-----T------- 369 (415)
Q Consensus 302 dg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-----~------- 369 (415)
+++.||+++.|+.|++||++++..+..+.+|.+.|.+|+|+|+++ +|++|+ .|++|++||+..+ +
T Consensus 366 ~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~-~l~Sgs--~Dgtv~lwd~~~~~~~~~~~~~~~~~ 442 (524)
T 2j04_B 366 QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP-MVLAGS--ADGSLIITNAARRLLHGIKNSSATQK 442 (524)
T ss_dssp TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCC-BCEEEE--TTTEEECCBSCSSTTTCC------CC
T ss_pred CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCC-eEEEEE--CCCEEEEEechHhhccccccCcccee
Confidence 999999999999999999999998888989999999999999998 666776 8999999986321 0
Q ss_pred --EEEE------------------------------e-eCCCCEEEEEECCCCC---eEEEEEecCCCcEEEEECCC
Q 014934 370 --HLSC------------------------------M-DTGSQVCNLVWSKNVN---ELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 370 --~~~~------------------------------~-~~~~~V~~l~~s~~~~---~l~s~~g~~dg~I~vw~~~s 410 (415)
.+.. + .+...|.+++|+|++. .|++ |+.+|.|+||++.-
T Consensus 443 ~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAs--g~~~g~vrlw~l~~ 517 (524)
T 2j04_B 443 SLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAF--SNSAGLLTLEYLSL 517 (524)
T ss_dssp CCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEE--ECTTSEEEEEECSC
T ss_pred eeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHh--hccCceEEEEEccc
Confidence 0101 1 1345688999999965 7777 88999999999863
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=243.50 Aligned_cols=234 Identities=20% Similarity=0.304 Sum_probs=188.3
Q ss_pred CcceeEeecCCC----cEEEEE-cCCeEEEEECCC-CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC
Q 014934 167 DFYLNLVDWSSH----NVLAVG-LGNCVYLWNACS-SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 167 ~~~i~~l~ws~~----~~la~~-~d~~V~iwd~~~-~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~ 240 (415)
.-.|++++|+|. ++|+++ .|+.|++|++.+ +........+|...|++++|+|++++|++|+.||.|++||+.++
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 118 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN 118 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC
Confidence 346999999995 677777 579999999987 55542222378999999999999999999999999999999998
Q ss_pred eeeEEecCCCccEEEEEe--e--CCEEEEEeCCCcEEEEECCCCCccEEEeccc--------------------------
Q 014934 241 KRVRTMEGHRLRVGALAW--S--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGH-------------------------- 290 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~--~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-------------------------- 290 (415)
+.+. +..|...|.+++| + +.+|++++.||.|++||+++... +..+..|
T Consensus 119 ~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 196 (368)
T 3mmy_A 119 QAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVLQLPERCYCADVIYPMAVVATAERGLIVYQ 196 (368)
T ss_dssp EEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEEEECSSCEEEEEEETTEEEEEEGGGCEEEEE
T ss_pred Ccee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEEEecCCCceEEEecCCeeEEEeCCCcEEEEE
Confidence 8776 5569999999999 5 46799999999999999988762 3333322
Q ss_pred ---------------cCCeEEEEEeCCCCE----EEEEeCCCcEEEEECCCC---ceeEEeccCCC------------cE
Q 014934 291 ---------------KSEVCGLKWSYDNRE----LASGGNDNRLFVWNQHST---QPVLKYCEHTA------------AV 336 (415)
Q Consensus 291 ---------------~~~V~~l~~spdg~~----lasg~~dg~I~iwd~~~~---~~~~~~~~h~~------------~V 336 (415)
...+.++.+.++... +++|+.|+.|++||++.. ..+..+..|.. .|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 276 (368)
T 3mmy_A 197 LENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAV 276 (368)
T ss_dssp CSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCE
T ss_pred eccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccce
Confidence 234455555554443 999999999999999887 56778878876 79
Q ss_pred EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
.+++|+|+++ +|++++ .|+.|++||+.+++++..+. +...|.+++|+|++++|++ ++.|+..+.|+
T Consensus 277 ~~~~~sp~~~-~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~s~d~~~~~~~ 343 (368)
T 3mmy_A 277 NGIAFHPVHG-TLATVG--SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAY--ASSYDWSKGHE 343 (368)
T ss_dssp EEEEECTTTC-CEEEEE--TTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEE--EECCCSTTCGG
T ss_pred EEEEEecCCC-EEEEEc--cCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEE--Eeccccccccc
Confidence 9999999987 556665 79999999999999998886 5788999999999999999 55565443333
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-29 Score=247.48 Aligned_cols=231 Identities=22% Similarity=0.372 Sum_probs=204.6
Q ss_pred cceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 168 FYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 168 ~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
..+.++.++.+.+++++.|+.|++||+.+++....+. +|...|.+++|+ +++|++|+.||.|++||+.+++.+..+.
T Consensus 120 ~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 196 (445)
T 2ovr_B 120 HVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY 196 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECC-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEc-CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC
Confidence 3467888875555555678999999999999887776 899999999997 6799999999999999999999999999
Q ss_pred CCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeE
Q 014934 248 GHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327 (415)
Q Consensus 248 ~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~ 327 (415)
+|...|.+++|+++.+++|+.||.|++||++++. .+..+.+|...|.+++| ++++|++|+.||.|++||+++++.+.
T Consensus 197 ~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (445)
T 2ovr_B 197 GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 273 (445)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE
Confidence 9999999999999999999999999999999887 57788899999999999 78899999999999999999999999
Q ss_pred EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEE
Q 014934 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (415)
Q Consensus 328 ~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw 406 (415)
.+.+|...|.+++| ++. .+++++ .|+.|++||+.+++.+..+. +...+.++.+ +++.|++ |+.||.|++|
T Consensus 274 ~~~~~~~~v~~~~~--~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~--~~~dg~i~vw 344 (445)
T 2ovr_B 274 TLQGHTNRVYSLQF--DGI-HVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVS--GNADSTVKIW 344 (445)
T ss_dssp EECCCSSCEEEEEE--CSS-EEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEE--EETTSCEEEE
T ss_pred EecCCCCceEEEEE--CCC-EEEEEe--CCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEE--EeCCCeEEEE
Confidence 99999999999999 454 667766 79999999999999988886 5567888777 4668888 7789999999
Q ss_pred ECCCCcc
Q 014934 407 RYPTMSK 413 (415)
Q Consensus 407 ~~~s~~~ 413 (415)
|+.+++.
T Consensus 345 d~~~~~~ 351 (445)
T 2ovr_B 345 DIKTGQC 351 (445)
T ss_dssp ETTTCCE
T ss_pred ECCCCcE
Confidence 9988764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=275.25 Aligned_cols=239 Identities=22% Similarity=0.353 Sum_probs=202.3
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCC--CeEEeEecCCCCCeEEEEEcCC--CCeEEEEECCCcEEEEECCCCe
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSS--KVTKLCDLGIDDSVCSVGWANR--NTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~--~~~~~~~~~~~~~V~~v~~sp~--g~~la~g~~dg~V~iwd~~~~~ 241 (415)
-.|++++|+| +++|++| .|+.|++|++.++ +....+. +|.+.|++++|+++ +++|++|+.||.|++||+.+++
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~ 88 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR 88 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 3699999999 6666666 6899999999854 3343443 78999999999988 9999999999999999999886
Q ss_pred --eeEEecCCCccEEEEEee----CCEEEEEeCCCcEEEEECCCCC-ccEEEeccccCCeEEEEEeC-------------
Q 014934 242 --RVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSY------------- 301 (415)
Q Consensus 242 --~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~sp------------- 301 (415)
.+..+.+|...|.+++|+ +..+++|+.||.|++||++... .....+.+|...|.+++|+|
T Consensus 89 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~ 168 (753)
T 3jro_A 89 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168 (753)
T ss_dssp EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CG
T ss_pred ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCC
Confidence 777888999999999998 4599999999999999998873 23456678999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCC----ceeEEeccCCCcEEEEEEcCCC--CcEEEEEcCCCCCeEEEEECCCCcE-----
Q 014934 302 DNRELASGGNDNRLFVWNQHST----QPVLKYCEHTAAVKAIAWSPHL--HGLLASGGGTADRCIRFWNTTTNTH----- 370 (415)
Q Consensus 302 dg~~lasg~~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~sp~~--~~llasggg~~d~~I~iwd~~t~~~----- 370 (415)
++.+|++|+.||.|++||++++ ..+..+.+|...|.+++|+|++ ..++++++ .|+.|++||+.+++.
T Consensus 169 d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s--~Dg~I~iwd~~~~~~~~~~~ 246 (753)
T 3jro_A 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNEQGPWKKT 246 (753)
T ss_dssp GGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--SSSCEEEEEESSSSSCCBCC
T ss_pred CCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe--cCCEEEEecCCCCCCcceeE
Confidence 5899999999999999999877 5567788999999999999993 34777776 899999999998742
Q ss_pred -EEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 371 -LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 371 -~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
.....+...|.+++|+|++++|++ |+.||.|++|++...
T Consensus 247 ~~~~~~~~~~v~~l~~spdg~~l~s--~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 247 LLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKENLE 286 (753)
T ss_dssp BSSSSCCSSCCCCEEECTTTCCEEE--ECSSSCEECCBCCSS
T ss_pred EeccCCCCCceEEEEEcCCCCEEEE--EcCCCEEEEEecCCC
Confidence 111225678999999999999999 778999999999853
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=279.58 Aligned_cols=237 Identities=21% Similarity=0.313 Sum_probs=210.9
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
.-.|++++|+| +.+|+++ .|+.|++||..+++....+. +|.+.|++++|+|+|++||+|+.||.|++||+.+++.+.
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~ 693 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH 693 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 34699999999 7777776 57999999999999887776 899999999999999999999999999999999999999
Q ss_pred EecCCCccEEEEEeeC----CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 245 TMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
.+.+|...|.+++|++ .++++|+.|+.|++||++++. ....+.+|...|.+++|+|++++|++|+.||.|++||+
T Consensus 694 ~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~ 772 (1249)
T 3sfz_A 694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772 (1249)
T ss_dssp EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEG
T ss_pred EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeC
Confidence 9999999999999974 489999999999999999887 67888999999999999999999999999999999998
Q ss_pred CCCceeEEe-------------------------------------------------------ccCCCcEEEEEEcCCC
Q 014934 321 HSTQPVLKY-------------------------------------------------------CEHTAAVKAIAWSPHL 345 (415)
Q Consensus 321 ~~~~~~~~~-------------------------------------------------------~~h~~~V~~l~~sp~~ 345 (415)
.+++....+ .+|...|.+++|+|++
T Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~ 852 (1249)
T 3sfz_A 773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD 852 (1249)
T ss_dssp GGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST
T ss_pred CCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC
Confidence 766433322 1678889999999998
Q ss_pred CcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 346 HGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 346 ~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
. ++++++ .|+.|++||+.++..+..+. +...|.+++|+|+++.|++ ++.|+.|++|++.+
T Consensus 853 ~-~l~~~~--~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s--~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 853 H-LAVIAL--SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLT--ASDDQTIRVWETKK 913 (1249)
T ss_dssp T-EEEEEC--SSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEEHHH
T ss_pred C-EEEEEe--CCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEE--EeCCCeEEEEEccc
Confidence 7 666665 79999999999999888776 6678999999999999998 77899999999753
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=250.06 Aligned_cols=231 Identities=19% Similarity=0.371 Sum_probs=198.3
Q ss_pred CcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee---
Q 014934 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV--- 243 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~--- 243 (415)
...|.+++|+...+++++.|+.|++||+.+++....+. +|...|.+++|+ +.+|++|+.||.|++||+.+++.+
T Consensus 173 ~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~ 249 (435)
T 1p22_A 173 TGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLI-HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLR 249 (435)
T ss_dssp SSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEEC-CCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred CCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEc-CCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceee
Confidence 34689999955555555578999999999999887776 788999999997 459999999999999999887655
Q ss_pred EEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 244 RTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
..+.+|...|.+++|++++|++|+.||.|++||++++. .+..+.+|...|.++.|+ +++|++|+.||.|++||++++
T Consensus 250 ~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 250 RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred eEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc-EEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC
Confidence 67789999999999999999999999999999999887 678888999999999994 789999999999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc---------EEEEee-CCCCEEEEEECCCCCeEE
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT---------HLSCMD-TGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~---------~~~~~~-~~~~V~~l~~s~~~~~l~ 393 (415)
+++..+.+|...|.+++| ++. ++++|+ .||.|++||+.+++ ++..+. +...|.+++| ++..|+
T Consensus 327 ~~~~~~~~h~~~v~~~~~--~~~-~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~ 399 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRF--DNK-RIVSGA--YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIV 399 (435)
T ss_dssp CEEEEECCCSSCEEEEEC--CSS-EEEEEE--TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEE
T ss_pred CEEEEEeCCcCcEEEEEe--cCC-EEEEEe--CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEE
Confidence 999999999999999999 444 777776 89999999997765 666664 6778999999 778888
Q ss_pred EEEecCCCcEEEEECCCCc
Q 014934 394 STHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s~~ 412 (415)
+ |+.||.|++||+.+..
T Consensus 400 s--~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 400 S--SSHDDTILIWDFLNDP 416 (435)
T ss_dssp E--CCSSSEEEEEC-----
T ss_pred E--EeCCCEEEEEECCCCC
Confidence 8 8899999999997654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=257.51 Aligned_cols=243 Identities=15% Similarity=0.198 Sum_probs=190.6
Q ss_pred CcceeEeecCC--CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 167 DFYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 167 ~~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.-.|++|+|+| +++|+++ .|++|++||+.++........ .+...+.+++|+|++++|++|+.||.|++||+. ++.
T Consensus 164 ~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~ 242 (435)
T 4e54_B 164 GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKE 242 (435)
T ss_dssp SCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCB
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cce
Confidence 44689999997 5566666 689999999987655444332 234568899999999999999999999999986 466
Q ss_pred eEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCcc--EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 014934 243 VRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDF--VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~i 317 (415)
+..+.+|...|.+++|++ .+|++|+.|+.|++||++..... .....+|...|.+++|+|+|++|++|+.||.|+|
T Consensus 243 ~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~i 322 (435)
T 4e54_B 243 LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRV 322 (435)
T ss_dssp CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEE
T ss_pred eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEE
Confidence 778899999999999984 48999999999999999876532 2234579999999999999999999999999999
Q ss_pred EECCCCceeEEeccCCC------cEEEEEEcCCCCcEEEEEc---------CCCCCeEEEEECCCCcEEEEee--CCCCE
Q 014934 318 WNQHSTQPVLKYCEHTA------AVKAIAWSPHLHGLLASGG---------GTADRCIRFWNTTTNTHLSCMD--TGSQV 380 (415)
Q Consensus 318 wd~~~~~~~~~~~~h~~------~V~~l~~sp~~~~llasgg---------g~~d~~I~iwd~~t~~~~~~~~--~~~~V 380 (415)
||+.++.....+..|.. .+..+.|+|.+..+++... +..++.|++||..+++.+..+. +...|
T Consensus 323 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v 402 (435)
T 4e54_B 323 YSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGI 402 (435)
T ss_dssp EESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCC
T ss_pred EECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcE
Confidence 99999988877766543 2334567777664433321 1245789999999999988774 55667
Q ss_pred EEE-EECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 381 CNL-VWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 381 ~~l-~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.++ +|+|+|++|++ |+ |+.|+||++.+++.
T Consensus 403 ~s~~~fspdg~~las--g~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 403 SSLNEFNPMGDTLAS--AM-GYHILIWSQQEART 433 (435)
T ss_dssp CCEEEECTTSSCEEE--EC-SSEEEECCCC----
T ss_pred EEEEEECCCCCEEEE--Ec-CCcEEEEECCcCee
Confidence 776 69999999987 54 78999999988753
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=251.31 Aligned_cols=234 Identities=15% Similarity=0.258 Sum_probs=178.5
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCC---eEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK---VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~---~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
...|.+++|+| +++|+++ .|+.|++||+.+++ ....+ .+|...|.+++|+|++++|++|+.||.|++||+.+++
T Consensus 55 ~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 133 (377)
T 3dwl_C 55 DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN 133 (377)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC----
T ss_pred CceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc
Confidence 34699999999 6666665 58999999999877 22222 2788999999999999999999999999999998876
Q ss_pred ---eeEEecC-CCccEEEEEee--CCEEEEEeCCCcEEEEECCCC-----------------CccEEEeccccCCeEEEE
Q 014934 242 ---RVRTMEG-HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQ-----------------EDFVSKLSGHKSEVCGLK 298 (415)
Q Consensus 242 ---~~~~l~~-h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~-----------------~~~~~~~~~h~~~V~~l~ 298 (415)
....+.+ |...|.+++|+ +.+|++|+.|+.|++||++.. ...+..+ +|...|.+++
T Consensus 134 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 212 (377)
T 3dwl_C 134 DWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG 212 (377)
T ss_dssp -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred cceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence 4677877 99999999998 479999999999999998632 1234445 8999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCce----eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc--E--
Q 014934 299 WSYDNRELASGGNDNRLFVWNQHSTQP----VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT--H-- 370 (415)
Q Consensus 299 ~spdg~~lasg~~dg~I~iwd~~~~~~----~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~--~-- 370 (415)
|+|++++||+|+.|+.|++||+.+++. +..+.+|...|.+++|+|++. +|++++ .++. .+|+...+. .
T Consensus 213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~~~~-~~~~~~~~~~~~~~ 288 (377)
T 3dwl_C 213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-IVAAGY--NYSP-ILLQGNESGWAHTR 288 (377)
T ss_dssp ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE-EEEEES--SSSE-EEECCCC---CCSB
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC-EEEEEc--CCcE-EEEEeCCCceEEEe
Confidence 999999999999999999999999887 778889999999999999986 777775 4554 467664211 0
Q ss_pred -----------------------E---------EEe-----------------eCCCCEEEEEECCCCC----eEEEEEe
Q 014934 371 -----------------------L---------SCM-----------------DTGSQVCNLVWSKNVN----ELVSTHG 397 (415)
Q Consensus 371 -----------------------~---------~~~-----------------~~~~~V~~l~~s~~~~----~l~s~~g 397 (415)
. ..+ .|...|.++.+.+... .|++ |
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s--~ 366 (377)
T 3dwl_C 289 DLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTS--S 366 (377)
T ss_dssp CCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEE--E
T ss_pred eecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEe--e
Confidence 0 000 1567799998766543 4776 7
Q ss_pred cCCCcEEEEEC
Q 014934 398 YSQNQIIVWRY 408 (415)
Q Consensus 398 ~~dg~I~vw~~ 408 (415)
+.||.|+|||+
T Consensus 367 g~Dg~i~iWdl 377 (377)
T 3dwl_C 367 GTDGRVVLWTL 377 (377)
T ss_dssp ETTSEEEEECC
T ss_pred cCCCcEEEecC
Confidence 78999999985
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=244.75 Aligned_cols=202 Identities=21% Similarity=0.386 Sum_probs=170.4
Q ss_pred cCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe--eeEEecCCCccEEEEEee----CCEEEEEeCCCcEEEEECC
Q 014934 205 LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--RVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIR 278 (415)
Q Consensus 205 ~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~ 278 (415)
.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++ .+..+.+|...|.+++|+ +++|++|+.|++|++||++
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~ 89 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE 89 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence 3899999999999999999999999999999998764 467889999999999996 4799999999999999998
Q ss_pred CCC-ccEEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEECCCCce---eEEeccCCCcEEEEEEcCCC-------
Q 014934 279 AQE-DFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHSTQP---VLKYCEHTAAVKAIAWSPHL------- 345 (415)
Q Consensus 279 ~~~-~~~~~~~~h~~~V~~l~~spd--g~~lasg~~dg~I~iwd~~~~~~---~~~~~~h~~~V~~l~~sp~~------- 345 (415)
++. .....+.+|...|.+++|+|+ +.+||+|+.|+.|++||++.+.. ...+.+|...|.+++|+|+.
T Consensus 90 ~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 169 (316)
T 3bg1_A 90 NGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID 169 (316)
T ss_dssp SSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-----
T ss_pred CCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccc
Confidence 764 245677899999999999998 88999999999999999987632 34556899999999999973
Q ss_pred ---------CcEEEEEcCCCCCeEEEEECCCC---cEEEEee-CCCCEEEEEECCCC----CeEEEEEecCCCcEEEEEC
Q 014934 346 ---------HGLLASGGGTADRCIRFWNTTTN---THLSCMD-TGSQVCNLVWSKNV----NELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 346 ---------~~llasggg~~d~~I~iwd~~t~---~~~~~~~-~~~~V~~l~~s~~~----~~l~s~~g~~dg~I~vw~~ 408 (415)
..+|++++ .|+.|++||+.++ +++..+. |...|.+++|+|++ ..|++ |+.|+.|+||++
T Consensus 170 ~~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las--~s~D~~v~iw~~ 245 (316)
T 3bg1_A 170 HPSGQKPNYIKRFASGG--CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS--CSQDGRVFIWTC 245 (316)
T ss_dssp -CCSCCCCCCCBEECCB--TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE--EETTCEEEEEEC
T ss_pred cccccCccccceEEEec--CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE--EcCCCeEEEEEc
Confidence 13778877 8999999999765 3444454 66789999999987 77887 789999999998
Q ss_pred CC
Q 014934 409 PT 410 (415)
Q Consensus 409 ~s 410 (415)
.+
T Consensus 246 ~~ 247 (316)
T 3bg1_A 246 DD 247 (316)
T ss_dssp SS
T ss_pred cC
Confidence 76
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=242.79 Aligned_cols=222 Identities=10% Similarity=0.044 Sum_probs=180.0
Q ss_pred CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC---------CCeeeEEec
Q 014934 178 HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS---------RCKRVRTME 247 (415)
Q Consensus 178 ~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~---------~~~~~~~l~ 247 (415)
+++|++| .|+.|++||+.+++....+. ...|.++.|+|+ +++|+.|++|++|+.. +++.+..+.
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 3455555 78999999999998877665 356888889888 9999999999999765 444444443
Q ss_pred -CCCccEEEEEeeC----CEEEEEeCCCcEEEEECCCCCccEEEe-ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 248 -GHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQEDFVSKL-SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 248 -~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
+|...|.+++|++ ++|++|+.||+|++||++++.. .... ..|...|.+++|+|++.+||+|+.||.|+|||++
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 200 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 6778999999975 6899999999999999998874 4444 3556689999999999999999999999999999
Q ss_pred CCcee-EEecc-CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC----CCCE--EEEEECCCCCeEE
Q 014934 322 STQPV-LKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT----GSQV--CNLVWSKNVNELV 393 (415)
Q Consensus 322 ~~~~~-~~~~~-h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~----~~~V--~~l~~s~~~~~l~ 393 (415)
+++.+ ..+.. |.+.|.+++|+|++. +|++++ |+.|++||+++++.+..+.. ...+ .+++|+|++++|+
T Consensus 201 ~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 201 SPDQASSRFPVDEEAKIKEVKFADNGY-WMVVEC---DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp CTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEE---SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred CCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEe---CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 99887 78888 999999999999987 666665 44999999999877654431 1223 4699999999999
Q ss_pred EEEecC-CCcEEEEECCCCc
Q 014934 394 STHGYS-QNQIIVWRYPTMS 412 (415)
Q Consensus 394 s~~g~~-dg~I~vw~~~s~~ 412 (415)
+ ++. |+.|+||++....
T Consensus 277 ~--~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 277 A--YSNESNSLTIYKFDKKT 294 (343)
T ss_dssp E--EETTTTEEEEEEECTTT
T ss_pred E--ecCCCCcEEEEEEcccc
Confidence 8 445 8999999997654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-28 Score=226.90 Aligned_cols=239 Identities=24% Similarity=0.414 Sum_probs=202.2
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC-eee
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC-KRV 243 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~-~~~ 243 (415)
...|++++|++ +++|++| .|+.|++|+..+++....+. +|...+.++.+ ++..+++|+.++.+.+|+.... ..+
T Consensus 67 ~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~-~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~ 143 (318)
T 4ggc_A 67 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHV 143 (318)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec-CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeE
Confidence 34699999999 7777776 58999999999999888776 78787776554 6789999999999999998765 466
Q ss_pred EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc---cEEEeccccCCeEEEEEeCCCCEE---EEEeCCCcE
Q 014934 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED---FVSKLSGHKSEVCGLKWSYDNREL---ASGGNDNRL 315 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg~~l---asg~~dg~I 315 (415)
..+.+|...+..+.+. +.+|++++.||.|++||+++++. .......|...|.++.++|++..+ ++++.++.|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i 223 (318)
T 4ggc_A 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 223 (318)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEE
T ss_pred EEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEE
Confidence 7788999999999998 68999999999999999987642 245566788899999999976533 467788999
Q ss_pred EEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEE
Q 014934 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s 394 (415)
++||.......... .+...+..+.|+|.+..+++++ |..|+.|++||+.+++++..+. |...|++++|+|++++|++
T Consensus 224 ~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s-g~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S 301 (318)
T 4ggc_A 224 RIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGH-GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 301 (318)
T ss_dssp EEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEE-CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred EEEecccccccccc-cceeeeeeeeecccccceEEEE-EcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 99999988776655 6778899999999998666544 4589999999999999999987 6789999999999999999
Q ss_pred EEecCCCcEEEEECCCCc
Q 014934 395 THGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s~~ 412 (415)
|+.|++|+|||+.+++
T Consensus 302 --~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 302 --AAADETLRLWRCFELD 317 (318)
T ss_dssp --EETTTEEEEECCSCCC
T ss_pred --EecCCeEEEEECCCCC
Confidence 7899999999998765
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=247.56 Aligned_cols=233 Identities=13% Similarity=0.241 Sum_probs=187.1
Q ss_pred cceeEeecCCC---cEE-EEEcCCeEEEEECCCCCeE---------------------------------------EeEe
Q 014934 168 FYLNLVDWSSH---NVL-AVGLGNCVYLWNACSSKVT---------------------------------------KLCD 204 (415)
Q Consensus 168 ~~i~~l~ws~~---~~l-a~~~d~~V~iwd~~~~~~~---------------------------------------~~~~ 204 (415)
..|++++|+|. ..| +++.|+.|++|++.+++.. ..+.
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 45889999993 344 4457899999998764431 1222
Q ss_pred cCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC-CeeeEE-------ecCCCccEEEEEeeC---CEEEEEeCCCcEE
Q 014934 205 LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-CKRVRT-------MEGHRLRVGALAWSS---SLLSSGSRDKSIL 273 (415)
Q Consensus 205 ~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~-~~~~~~-------l~~h~~~V~~l~~~~---~~l~sgs~dg~I~ 273 (415)
.+|...|++++|+|+|++|++| .||.|++||+.+ .+.+.. +.+|...|.+++|++ .+|++|+.||.|+
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR 252 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence 3789999999999999999998 899999999984 444442 568999999999993 7899999999999
Q ss_pred EEECCCCCc---cEEEeccccC------------CeEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeEEeccCCCc--
Q 014934 274 QRDIRAQED---FVSKLSGHKS------------EVCGLKWSYDNRELASGGNDNRLFVWNQHS-TQPVLKYCEHTAA-- 335 (415)
Q Consensus 274 iwd~~~~~~---~~~~~~~h~~------------~V~~l~~spdg~~lasg~~dg~I~iwd~~~-~~~~~~~~~h~~~-- 335 (415)
+||++.... ....+.+|.. .|.+++|+|++++|++++. +.|+|||+++ ++++..+.+|...
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~ 331 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRS 331 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccc
Confidence 999998763 1567777776 8999999999999999999 9999999997 8888888888642
Q ss_pred -------------EEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe----------------------------
Q 014934 336 -------------VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM---------------------------- 374 (415)
Q Consensus 336 -------------V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~---------------------------- 374 (415)
+..++|+|++. +|++++ .|+.|++||+.+++.+...
T Consensus 332 ~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (447)
T 3dw8_B 332 KLCSLYENDCIFDKFECCWNGSDS-VVMTGS--YNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEI 408 (447)
T ss_dssp THHHHHHTSGGGCCCCEEECTTSS-EEEEEC--STTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCE
T ss_pred cccccccccccccceEEEECCCCC-EEEEec--cCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccc
Confidence 33499999998 557776 8999999999999876422
Q ss_pred -----eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 375 -----DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 375 -----~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
+....|..++|+|+++.|++ +..+ .+++|.-
T Consensus 409 ~~~~~~~~~~i~~~~~~p~~~~la~--~~~~-~~~~~~~ 444 (447)
T 3dw8_B 409 SVDSLDFNKKILHTAWHPKENIIAV--ATTN-NLYIFQD 444 (447)
T ss_dssp EGGGCCTTSCCCEEEECSSSSEEEE--ECSS-CEEEEEC
T ss_pred cccccccCCceeEEEECCCCCEEEE--Eecc-eeeeecc
Confidence 23456889999999999998 5444 5888864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-28 Score=258.80 Aligned_cols=240 Identities=16% Similarity=0.234 Sum_probs=209.3
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC-eee
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC-KRV 243 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~-~~~ 243 (415)
...|.+++|+| +++|+++ .++.|++||..+++....+. +|.+.|++++|+|+|++|++|+.||.|++||+.++ ...
T Consensus 55 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 133 (814)
T 3mkq_A 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133 (814)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEE
T ss_pred CCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence 34689999999 6667766 57999999999999887776 78999999999999999999999999999999886 777
Q ss_pred EEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC--CCCEEEEEeCCCcEEEE
Q 014934 244 RTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY--DNRELASGGNDNRLFVW 318 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~lasg~~dg~I~iw 318 (415)
..+.+|...|.+++|++ ..|++++.||.|++||++...........|...|.+++|+| ++.+|++|+.||.|++|
T Consensus 134 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~ 213 (814)
T 3mkq_A 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213 (814)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEE
T ss_pred EEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 88889999999999985 58999999999999999887754444445558999999999 99999999999999999
Q ss_pred ECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeE-EEEE
Q 014934 319 NQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNEL-VSTH 396 (415)
Q Consensus 319 d~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l-~s~~ 396 (415)
|+.+++.+..+.+|...|.+++|+|++. ++++++ .|+.|++||+.+++.+..+. +...+.+++|+|++..+ +++
T Consensus 214 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~- 289 (814)
T 3mkq_A 214 DYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGS--EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIAS- 289 (814)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECSSSS-EEEEEE--TTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEE-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCC-EEEEEe--CCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEE-
Confidence 9999999999999999999999999998 677776 79999999999999988886 45789999999999854 332
Q ss_pred ecCCCcEEEEECCCCc
Q 014934 397 GYSQNQIIVWRYPTMS 412 (415)
Q Consensus 397 g~~dg~I~vw~~~s~~ 412 (415)
| .++.+.+|++....
T Consensus 290 ~-~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 290 G-FDNGFTVLSLGNDE 304 (814)
T ss_dssp E-ETTEEEEEECSCCS
T ss_pred E-eCCCEEEEEcCCCC
Confidence 4 47789999986543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=237.17 Aligned_cols=208 Identities=18% Similarity=0.343 Sum_probs=178.8
Q ss_pred eEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC--CCeeeEEecCCCccEEEEEee----CCEEEEEeCCCcE
Q 014934 199 VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS--RCKRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSI 272 (415)
Q Consensus 199 ~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~--~~~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I 272 (415)
+...+. +|.+.|++++|+|+|++||+|+.||.|+|||+. +.+.+..+.+|...|.+++|+ +.+|++|+.||.|
T Consensus 3 ~~~~~~-~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 3 MVVIAN-AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp --CCEE-ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccEEec-CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 344454 789999999999999999999999999999997 667788899999999999997 5899999999999
Q ss_pred EEEECCCCC-ccEEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEECCCC--ceeEEeccCCCcEEEEEEcCC---
Q 014934 273 LQRDIRAQE-DFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHST--QPVLKYCEHTAAVKAIAWSPH--- 344 (415)
Q Consensus 273 ~iwd~~~~~-~~~~~~~~h~~~V~~l~~spd--g~~lasg~~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~sp~--- 344 (415)
++||++.+. .....+..|...|.+++|+|+ +.+|++++.|+.|++||+++. .....+..|...|.+++|+|.
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999875 245677789999999999999 999999999999999999887 345566789999999999994
Q ss_pred ----------CCcEEEEEcCCCCCeEEEEECCCCcE----EEEee-CCCCEEEEEECCC---CCeEEEEEecCCCcEEEE
Q 014934 345 ----------LHGLLASGGGTADRCIRFWNTTTNTH----LSCMD-TGSQVCNLVWSKN---VNELVSTHGYSQNQIIVW 406 (415)
Q Consensus 345 ----------~~~llasggg~~d~~I~iwd~~t~~~----~~~~~-~~~~V~~l~~s~~---~~~l~s~~g~~dg~I~vw 406 (415)
+. ++++++ .|+.|++||++++.. +..+. +...|.+++|+|+ +++|++ ++.||.|++|
T Consensus 162 ~~~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s--~~~dg~i~iw 236 (379)
T 3jrp_A 162 EDGEHNGTKESR-KFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIW 236 (379)
T ss_dssp --------CTTC-EEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEEEE
T ss_pred ccccccCCCCCC-EEEEEe--CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE--EeCCCEEEEE
Confidence 55 777776 899999999987653 23333 6788999999999 888888 7789999999
Q ss_pred ECCCCc
Q 014934 407 RYPTMS 412 (415)
Q Consensus 407 ~~~s~~ 412 (415)
++.+.+
T Consensus 237 d~~~~~ 242 (379)
T 3jrp_A 237 TQDNEQ 242 (379)
T ss_dssp EESSTT
T ss_pred eCCCCC
Confidence 998753
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-28 Score=242.32 Aligned_cols=238 Identities=18% Similarity=0.176 Sum_probs=197.2
Q ss_pred cceeEeecCC-CcEE-EEE-cCCeEEEEECC--CCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 168 FYLNLVDWSS-HNVL-AVG-LGNCVYLWNAC--SSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 168 ~~i~~l~ws~-~~~l-a~~-~d~~V~iwd~~--~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
-.|++++|+| +..| +++ .|+.|++|++. +++....+.. .+...|++++|+|+|++|++|+.+|.|.+|++.+++
T Consensus 103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIP 182 (450)
T ss_dssp CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCC
T ss_pred CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcc
Confidence 3599999999 6664 666 57999999998 7877766642 467899999999999999999999999999998876
Q ss_pred eeE----EecCCCccEEEEEeeCC-----EEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC
Q 014934 242 RVR----TMEGHRLRVGALAWSSS-----LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND 312 (415)
Q Consensus 242 ~~~----~l~~h~~~V~~l~~~~~-----~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d 312 (415)
... .+.+|...|.+++|+++ +|++|+.|+.|++||++++......+.+|...|.+++|+ ++++|++|+.|
T Consensus 183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d 261 (450)
T 2vdu_B 183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD 261 (450)
T ss_dssp CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence 544 67789999999999865 899999999999999998874333366899999999999 99999999999
Q ss_pred CcEEEEECCCCceeEEecc-------------------------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC--
Q 014934 313 NRLFVWNQHSTQPVLKYCE-------------------------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT-- 365 (415)
Q Consensus 313 g~I~iwd~~~~~~~~~~~~-------------------------h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~-- 365 (415)
+.|+|||+.+++.+..+.. +...|.+++|+|+++.+++++. .|+.|++|++
T Consensus 262 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--~d~~i~iw~~~~ 339 (450)
T 2vdu_B 262 DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE--ATKCIIILEMSE 339 (450)
T ss_dssp SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET--TCSEEEEEEECS
T ss_pred CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC--CCCeEEEEEecc
Confidence 9999999999998888753 2357999999999987777664 6999999999
Q ss_pred CCC---cEEEEeeCCCCEEEEEECCCCCeEEEEEecC------CCcEEEEECCC
Q 014934 366 TTN---THLSCMDTGSQVCNLVWSKNVNELVSTHGYS------QNQIIVWRYPT 410 (415)
Q Consensus 366 ~t~---~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~------dg~I~vw~~~s 410 (415)
.++ +.+..+.....|.+++|+|++ .++++ +.. ++.|.+|.+..
T Consensus 340 ~~~~~l~~~~~~~~~~~v~~~~~~~~~-~~v~~-~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 340 KQKGDLALKQIITFPYNVISLSAHNDE-FQVTL-DNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp SSTTCEEEEEEEECSSCEEEEEEETTE-EEEEE-CCTTCCSSCCCSEEEEEEET
T ss_pred CCCCceeeccEeccCCceEEEEecCCc-EEEEE-ecccCCCCCCcceEEEEEEc
Confidence 666 666777767899999999954 44443 332 55688988753
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-28 Score=235.48 Aligned_cols=229 Identities=14% Similarity=0.113 Sum_probs=188.8
Q ss_pred cceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeE-EEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~l-a~g~~dg~V~iwd~~~~~~~~~ 245 (415)
-.|++++|+| +.+||+|.++.+++|+..+++....... ..+..+++.++++.+ ++|+.|+.|+|||+.+++.+..
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~ 96 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM---RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR 96 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC---SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec---CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence 3588999999 8899999888899999887765544432 257888999988877 4577789999999999999988
Q ss_pred ecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEE--EeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELAS--GGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~las--g~~dg~I~iwd~~~~ 323 (415)
+. |...|.+++++++.++++. |+.|++||+......+..+.. ....+++++ .++|+ |+.||.|++||+.++
T Consensus 97 ~~-~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~ 169 (355)
T 3vu4_A 97 IK-VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSS 169 (355)
T ss_dssp EE-CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-
T ss_pred EE-CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCC
Confidence 87 6779999999988877765 788999999987223333333 344456666 66766 589999999999986
Q ss_pred c---------------e-eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCe-EEEEECCCCcEEEEee---CCCCEEEE
Q 014934 324 Q---------------P-VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC-IRFWNTTTNTHLSCMD---TGSQVCNL 383 (415)
Q Consensus 324 ~---------------~-~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~-I~iwd~~t~~~~~~~~---~~~~V~~l 383 (415)
+ + +..+.+|...|.+++|+|++. +|++++ .|++ |++||+.+++++..+. +...|.++
T Consensus 170 ~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s--~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~ 246 (355)
T 3vu4_A 170 GSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCS--QDGTIIRVFKTEDGVLVREFRRGLDRADVVDM 246 (355)
T ss_dssp -----------------CCEEECCCSSCEEEEEECTTSS-EEEEEE--TTCSEEEEEETTTCCEEEEEECTTCCSCEEEE
T ss_pred CccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEe--CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEE
Confidence 5 2 778899999999999999987 778877 8998 9999999999999997 77899999
Q ss_pred EECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 384 VWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 384 ~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+|+|++++|++ ++.|+.|+|||+...
T Consensus 247 ~~s~~~~~l~s--~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 247 KWSTDGSKLAV--VSDKWTLHVFEIFND 272 (355)
T ss_dssp EECTTSCEEEE--EETTCEEEEEESSCC
T ss_pred EECCCCCEEEE--EECCCEEEEEEccCC
Confidence 99999999999 778999999999764
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=245.61 Aligned_cols=234 Identities=14% Similarity=0.147 Sum_probs=170.8
Q ss_pred ecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEe----cCCCCCeEEEEEcC--------CCCeEEEEECCCcEEEEECCC
Q 014934 174 DWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCD----LGIDDSVCSVGWAN--------RNTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 174 ~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~----~~~~~~V~~v~~sp--------~g~~la~g~~dg~V~iwd~~~ 239 (415)
.+++ ..+||++ .|++|+|||..+++...... .+|.+.|.+|+|+| +|++||+|+.|++|+|||+.+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 3344 5667766 58999999999887644322 27999999999998 889999999999999999998
Q ss_pred CeeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccE------------------------EEeccccC
Q 014934 240 CKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFV------------------------SKLSGHKS 292 (415)
Q Consensus 240 ~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~------------------------~~~~~h~~ 292 (415)
+..+..+.+|...|.+++|+| .+|++|+.||+|++||++++.... ....+|..
T Consensus 176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 255 (393)
T 4gq1_A 176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS 255 (393)
T ss_dssp TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence 888888888999999999995 479999999999999998765211 11246778
Q ss_pred CeEEEEEe-CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEc------------------CC-CCcEEEEE
Q 014934 293 EVCGLKWS-YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS------------------PH-LHGLLASG 352 (415)
Q Consensus 293 ~V~~l~~s-pdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s------------------p~-~~~llasg 352 (415)
.|.++.|+ |+++.|++++.|+.+++||+..++....+..|...+..+.+. |. +..++++|
T Consensus 256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 335 (393)
T 4gq1_A 256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH 335 (393)
T ss_dssp SCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE
T ss_pred cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE
Confidence 89999987 799999999999999999998887766666665555444333 32 33355666
Q ss_pred cCCCCCeEEEEECCCCcEEEEe-eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 353 GGTADRCIRFWNTTTNTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 353 gg~~d~~I~iwd~~t~~~~~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+ .|+.|++||+.+++++... .+...|.+++|+|+|++|++ ++ ++.+.+|++....
T Consensus 336 s--~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~--as-~~Gv~lvrL~gf~ 391 (393)
T 4gq1_A 336 S--QHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAI--AT-EGSVLLTRLMGFT 391 (393)
T ss_dssp T--TTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEE--EE-SSEEEEEEEGGGC
T ss_pred C--CCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEE--Ee-CCCeEEEEEeCcc
Confidence 5 8999999999998876554 47789999999999999998 54 4567777765433
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=247.89 Aligned_cols=234 Identities=14% Similarity=0.173 Sum_probs=192.3
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECC---CCCeEEeEe--------c-C--CCCCeEEEE--EcCCCCeEEEEEC
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNAC---SSKVTKLCD--------L-G--IDDSVCSVG--WANRNTHLAVGTS 228 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~---~~~~~~~~~--------~-~--~~~~V~~v~--~sp~g~~la~g~~ 228 (415)
...|.+++|++ +++|+++ .|+.|++||+. +++...... + . +...+.++. +++++.+|++|+.
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN 190 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC
Confidence 34699999999 6666665 68999999984 555443322 1 1 566778877 5688999999999
Q ss_pred CCcEEEEECCCCeeeEEecC--CCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec-cccCCeEEEEEeC--
Q 014934 229 HGKVQIWDASRCKRVRTMEG--HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS-GHKSEVCGLKWSY-- 301 (415)
Q Consensus 229 dg~V~iwd~~~~~~~~~l~~--h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~sp-- 301 (415)
||.|++||+.+++.+..+.+ |...|.+++|+ +.+|++|+.||.|++||++.+. .+..+. .|...|.+++|+|
T Consensus 191 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 269 (437)
T 3gre_A 191 LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPITHVEVCQFY 269 (437)
T ss_dssp TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE-EEEEEBCTTCEEEEEEEECTTT
T ss_pred CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc-EEEEEecCCCCceEEEEecccc
Confidence 99999999999999999988 89999999998 5799999999999999999876 556654 7888999996664
Q ss_pred --CCCEEEEEeCCCcEEEEECCCCceeEEecc--------------------------CCCcEEEEEEcCCCCcEEEEEc
Q 014934 302 --DNRELASGGNDNRLFVWNQHSTQPVLKYCE--------------------------HTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 302 --dg~~lasg~~dg~I~iwd~~~~~~~~~~~~--------------------------h~~~V~~l~~sp~~~~llasgg 353 (415)
++.+|++|+.||.|+|||+++++.+..+.+ |...|.+++|+ ++ .+|++++
T Consensus 270 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~ 347 (437)
T 3gre_A 270 GKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDE 347 (437)
T ss_dssp CTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEG
T ss_pred CCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecC
Confidence 688999999999999999999988877764 45567888888 44 4778887
Q ss_pred CCCCCeEEEEECCCCcEEEEee--------------------------------------CCCCEEEEEECCC--CCeEE
Q 014934 354 GTADRCIRFWNTTTNTHLSCMD--------------------------------------TGSQVCNLVWSKN--VNELV 393 (415)
Q Consensus 354 g~~d~~I~iwd~~t~~~~~~~~--------------------------------------~~~~V~~l~~s~~--~~~l~ 393 (415)
.|+.|++||+.+++.+..+. |...|.+++|+++ +..|+
T Consensus 348 --~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~ 425 (437)
T 3gre_A 348 --ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLV 425 (437)
T ss_dssp --GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEE
T ss_pred --CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEE
Confidence 89999999999988766554 5678999999998 66777
Q ss_pred EEEecCCCcEEEEE
Q 014934 394 STHGYSQNQIIVWR 407 (415)
Q Consensus 394 s~~g~~dg~I~vw~ 407 (415)
+ |+.||.|+||+
T Consensus 426 s--~~~dG~I~iw~ 437 (437)
T 3gre_A 426 A--CDNSGLIGIFQ 437 (437)
T ss_dssp E--EETTSCEEEEC
T ss_pred E--EcCCceEEEeC
Confidence 7 78999999995
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-28 Score=232.81 Aligned_cols=225 Identities=16% Similarity=0.201 Sum_probs=194.2
Q ss_pred CcceeEeecCC-Cc-EEEEE-cCCeEEEEEC-CCCCeEEeEecC--CCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC-
Q 014934 167 DFYLNLVDWSS-HN-VLAVG-LGNCVYLWNA-CSSKVTKLCDLG--IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR- 239 (415)
Q Consensus 167 ~~~i~~l~ws~-~~-~la~~-~d~~V~iwd~-~~~~~~~~~~~~--~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~- 239 (415)
...+.+++|++ ++ +|+++ .++.|++|++ .+++...+. + |...|.+++|+| +.+|++|+.||.|++||+.+
T Consensus 56 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~ 132 (342)
T 1yfq_A 56 KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT--NNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNY 132 (342)
T ss_dssp SSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECB--SCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHH
T ss_pred CCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEecc--ccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccc
Confidence 34689999998 66 56665 6899999999 888764333 6 899999999999 99999999999999999987
Q ss_pred --------CeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCC-CCc-cEEEeccccCCeEEEEEeC-CCCEEEE
Q 014934 240 --------CKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRA-QED-FVSKLSGHKSEVCGLKWSY-DNRELAS 308 (415)
Q Consensus 240 --------~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~-~~~-~~~~~~~h~~~V~~l~~sp-dg~~las 308 (415)
++.+..+. |...|.+++|+++.+++++.|+.|++||++. ... .......|...|.+++|+| ++++|++
T Consensus 133 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~ 211 (342)
T 1yfq_A 133 GDGVIAVKNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC 211 (342)
T ss_dssp TTBCEEEEESCSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE
T ss_pred ccccccccCCeeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEE
Confidence 66666666 8899999999988899999999999999998 543 3345567889999999999 9999999
Q ss_pred EeCCCcEEEEECCCC------ceeEEeccCCC---------cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE
Q 014934 309 GGNDNRLFVWNQHST------QPVLKYCEHTA---------AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC 373 (415)
Q Consensus 309 g~~dg~I~iwd~~~~------~~~~~~~~h~~---------~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~ 373 (415)
|+.||.|++||+... +.+..+..|.. .|.+++|+|++. +|++++ .|+.|++||+.+++.+..
T Consensus 212 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~--~dg~i~vwd~~~~~~~~~ 288 (342)
T 1yfq_A 212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAG--SDGIISCWNLQTRKKIKN 288 (342)
T ss_dssp EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEE--TTSCEEEEETTTTEEEEE
T ss_pred EecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC-EEEEec--CCceEEEEcCccHhHhhh
Confidence 999999999999887 78888888865 999999999988 556665 799999999999999888
Q ss_pred ee-C-CCCEEEEEECCCCCeEEEEEecCCCc
Q 014934 374 MD-T-GSQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 374 ~~-~-~~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
+. + ...|.+++ +++++|++ ++.||.
T Consensus 289 ~~~~h~~~v~~~~--~~~~~l~s--~s~Dg~ 315 (342)
T 1yfq_A 289 FAKFNEDSVVKIA--CSDNILCL--ATSDDT 315 (342)
T ss_dssp CCCCSSSEEEEEE--ECSSEEEE--EEECTH
T ss_pred hhcccCCCceEec--CCCCeEEE--EecCCc
Confidence 86 4 67899999 99999999 667888
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-28 Score=247.06 Aligned_cols=234 Identities=18% Similarity=0.243 Sum_probs=203.7
Q ss_pred cc-eeEeecCC---CcEEEEE-cCCeEEEEECCCC--------CeEEeEecCCCCCeEEEEEcCCCCeEEEEECC----C
Q 014934 168 FY-LNLVDWSS---HNVLAVG-LGNCVYLWNACSS--------KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH----G 230 (415)
Q Consensus 168 ~~-i~~l~ws~---~~~la~~-~d~~V~iwd~~~~--------~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d----g 230 (415)
.. |++++|+| +++|+++ .|+.|++|++.++ +....+. .|...|.+++|+|+|++|++++.+ +
T Consensus 64 ~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 142 (615)
T 1pgu_A 64 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGEGRDNFG 142 (615)
T ss_dssp TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEECCSSCSE
T ss_pred CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhh-cccccEEEEEEeCCCCEEEEeccCCCCcc
Confidence 35 89999998 4566666 5899999999755 3444443 688999999999999999999987 6
Q ss_pred cEEEEECCCCeeeEEecCCCccEEEEEeeCC---EEEEEeCCCcEEEEECCCCCccEEEeccccC---CeEEEEEeCC-C
Q 014934 231 KVQIWDASRCKRVRTMEGHRLRVGALAWSSS---LLSSGSRDKSILQRDIRAQEDFVSKLSGHKS---EVCGLKWSYD-N 303 (415)
Q Consensus 231 ~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~---~V~~l~~spd-g 303 (415)
.|.+|| .++.+..+.+|...|.+++|+++ .|++++.|+.|++||+.... ....+.+|.. .|.+++|+|+ +
T Consensus 143 ~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (615)
T 1pgu_A 143 VFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-FSASDRTHHKQGSFVRDVEFSPDSG 219 (615)
T ss_dssp EEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-EEEEECSSSCTTCCEEEEEECSTTC
T ss_pred EEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-eeeeecccCCCCceEEEEEECCCCC
Confidence 888888 56788899999999999999953 89999999999999998876 5778889999 9999999999 9
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEe-c---cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC--
Q 014934 304 RELASGGNDNRLFVWNQHSTQPVLKY-C---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-- 377 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~~~~~~~~~-~---~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-- 377 (415)
++|++++.|+.|++||+.+++.+..+ . .|...|.+++|+ ++. ++++++ .|+.|++||+.+++.+..+...
T Consensus 220 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~ 295 (615)
T 1pgu_A 220 EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVG--ADATIRVWDVTTSKCVQKWTLDKQ 295 (615)
T ss_dssp CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEE--TTSEEEEEETTTTEEEEEEECCTT
T ss_pred CEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC-EEEEEc--CCCcEEEEECCCCcEEEEEcCCCC
Confidence 99999999999999999999999998 6 899999999999 766 666666 7999999999999999888754
Q ss_pred ---CCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 378 ---SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 378 ---~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
..+.++.|. ++..+++ |+.|+.|++|++.+.+
T Consensus 296 ~~~~~~~~~~~~-~~~~l~~--~~~~g~i~~~d~~~~~ 330 (615)
T 1pgu_A 296 QLGNQQVGVVAT-GNGRIIS--LSLDGTLNFYELGHDE 330 (615)
T ss_dssp CGGGCEEEEEEE-ETTEEEE--EETTSCEEEEETTEEE
T ss_pred cccCceeEEEeC-CCCeEEE--EECCCCEEEEECCCCc
Confidence 678889996 8888888 7789999999998654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=240.20 Aligned_cols=212 Identities=22% Similarity=0.444 Sum_probs=181.6
Q ss_pred CCCeEEeEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCC----------CeeeEEecCCCccEEEEEeeC--C-
Q 014934 196 SSKVTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASR----------CKRVRTMEGHRLRVGALAWSS--S- 261 (415)
Q Consensus 196 ~~~~~~~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~----------~~~~~~l~~h~~~V~~l~~~~--~- 261 (415)
++++.......|.+.|++++|+|+ +.+||+|+.+|.|++||+.+ .+.+..+.+|...|.+++|++ .
T Consensus 116 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 116 CGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 195 (430)
T ss_dssp --CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT
T ss_pred CCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC
Confidence 344444444578899999999997 78999999999999999976 577788899999999999984 3
Q ss_pred EEEEEeCCCcEEEEECCCCCc------cEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCC---ceeEEecc
Q 014934 262 LLSSGSRDKSILQRDIRAQED------FVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHST---QPVLKYCE 331 (415)
Q Consensus 262 ~l~sgs~dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~---~~~~~~~~ 331 (415)
+|++|+.||.|++||+..... ....+.+|...|.+++|+| ++.+|++++.|+.|++||++++ +++..+..
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence 999999999999999987431 1356678999999999999 7889999999999999999987 67888889
Q ss_pred CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC-CcEEEEee-CCCCEEEEEECCCCCe-EEEEEecCCCcEEEEEC
Q 014934 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-NTHLSCMD-TGSQVCNLVWSKNVNE-LVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 332 h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t-~~~~~~~~-~~~~V~~l~~s~~~~~-l~s~~g~~dg~I~vw~~ 408 (415)
|...|.+++|+|++.+++++|+ .|+.|++||+++ +..+..+. +...|.+++|+|++.. |++ ++.|+.|+|||+
T Consensus 276 ~~~~v~~i~~~p~~~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s--~~~d~~i~iwd~ 351 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS--SGTDRRLHVWDL 351 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE--EETTSCCEEEEG
T ss_pred CCCCeEEEEeCCCCCCEEEEEe--CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE--EeCCCcEEEEeC
Confidence 9999999999999998999987 899999999998 55666665 7789999999999975 555 678999999999
Q ss_pred CCC
Q 014934 409 PTM 411 (415)
Q Consensus 409 ~s~ 411 (415)
...
T Consensus 352 ~~~ 354 (430)
T 2xyi_A 352 SKI 354 (430)
T ss_dssp GGT
T ss_pred CCC
Confidence 763
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-28 Score=234.40 Aligned_cols=196 Identities=14% Similarity=0.132 Sum_probs=164.6
Q ss_pred CcceeEeecCC-CcEEEEE---cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 167 DFYLNLVDWSS-HNVLAVG---LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~---~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
+.|+.+++||| +++|+++ .|+.|+|||+.+++....+ .|...|.+|+|+|+|++|++++.+ .+.+|+..+++.
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~--~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~ 209 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI--ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC 209 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE--ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe--CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcc
Confidence 45789999999 7776654 3689999999999877666 467889999999999999998855 577777777665
Q ss_pred eE--EecCCCccEEEEEee--CCEEEEEeCCC----cEEEEECCCCCcc---EEEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 243 VR--TMEGHRLRVGALAWS--SSLLSSGSRDK----SILQRDIRAQEDF---VSKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 243 ~~--~l~~h~~~V~~l~~~--~~~l~sgs~dg----~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
+. ....|...|.+++|+ +..+++++.|+ .+++||+...... ...+.+|...|++++|+|||++||+|+.
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~ 289 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN 289 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence 53 345789999999998 56888988887 5888998766422 3456789999999999999999999999
Q ss_pred CCcEEEEECCCCceeEEe-ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC
Q 014934 312 DNRLFVWNQHSTQPVLKY-CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (415)
Q Consensus 312 dg~I~iwd~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~ 368 (415)
|+.|+|||+++++++..+ .+|...|++|+|+|+++ +|++++ .|++|+|||+...
T Consensus 290 D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S--~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 290 DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDST-YVASVS--AANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSC-EEEEEE--TTSEEEEEECCTT
T ss_pred CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCC-EEEEEe--CCCeEEEEEcCCC
Confidence 999999999999999885 68999999999999997 788887 8999999999653
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=243.87 Aligned_cols=227 Identities=11% Similarity=0.100 Sum_probs=183.9
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEE---------------------------EEECCCCCeEEeEecCCCCCeEEEEEcCC
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVY---------------------------LWNACSSKVTKLCDLGIDDSVCSVGWANR 219 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~---------------------------iwd~~~~~~~~~~~~~~~~~V~~v~~sp~ 219 (415)
.+.+|+|+| +.++|+++ |++|+ .|++.+++....+.+.|.+.|.+++|+|+
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPd 96 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPI 96 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSS
T ss_pred cEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCC
Confidence 478899999 77888764 56673 12223333223334456788999999999
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeEEecCCCc-----cEEEEEee--CCEEEEEeCCCcEEEEECCCCCc------cEEE
Q 014934 220 NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL-----RVGALAWS--SSLLSSGSRDKSILQRDIRAQED------FVSK 286 (415)
Q Consensus 220 g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~-----~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~------~~~~ 286 (415)
|++||+++.||.|+|||.+. ++..+. |.. .|.+++|+ +++|++|+.||+|++||+..+.. .+..
T Consensus 97 G~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~t 173 (588)
T 2j04_A 97 DDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESS 173 (588)
T ss_dssp SSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeee
Confidence 99999999999999999654 666677 665 49999999 58999999999999999988742 2455
Q ss_pred e----ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce---eEEe-ccCCCcEEEEEEcCCCCcEEEEEcCCCCC
Q 014934 287 L----SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP---VLKY-CEHTAAVKAIAWSPHLHGLLASGGGTADR 358 (415)
Q Consensus 287 ~----~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~---~~~~-~~h~~~V~~l~~sp~~~~llasggg~~d~ 358 (415)
+ .+|...|.+++|+||| ||+++.|+.|++||+.+++. ..++ .+|...|.+++|+ + ..+|+++ ++
T Consensus 174 i~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~---~~ 245 (588)
T 2j04_A 174 IRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVLTC---PG 245 (588)
T ss_dssp EECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC---SS
T ss_pred eecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C-CEEEEEe---CC
Confidence 5 6788899999999999 88899999999999988763 3566 4788999999999 4 4777775 69
Q ss_pred eEEEEECCCCcE-EEEeeCCCCEEEEEE--CCCCCeEEEEEecCCCcEEEEECC
Q 014934 359 CIRFWNTTTNTH-LSCMDTGSQVCNLVW--SKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 359 ~I~iwd~~t~~~-~~~~~~~~~V~~l~~--s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.|++||+.+++. .....|.+.|..+.| +|++..|++ ++.+|+ ++|.+.
T Consensus 246 tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~--a~edG~-klw~~d 296 (588)
T 2j04_A 246 YVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLM--SNKTSY-KVLLED 296 (588)
T ss_dssp EEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEE--CSSCEE-EEEESS
T ss_pred eEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEE--EcCCCC-EEEeec
Confidence 999999999887 444478888999999 999999988 788999 999975
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-29 Score=276.61 Aligned_cols=237 Identities=19% Similarity=0.254 Sum_probs=211.9
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
..+.+++|+| ++++++| .++.|++|+..+++...... +|...|++++|+|+|++|++|+.||.|++||+.+++.+.
T Consensus 962 ~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~- 1039 (1249)
T 3sfz_A 962 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV-GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF- 1039 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC-CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-
T ss_pred CcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-
Confidence 3588999999 7777777 57899999999998877665 889999999999999999999999999999999987764
Q ss_pred ecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 246 MEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 246 l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
+..|...|.+++|+ +..+++++.||.|++||+.++. ....+.+|...|.+++|+|++++|++|+.|+.|++||+.+++
T Consensus 1040 ~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A 1040 LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR-IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1118 (1249)
T ss_dssp CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTC-CCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS
T ss_pred EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCc-eeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc
Confidence 56799999999999 5789999999999999999887 577888999999999999999999999999999999999999
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe----------eCCCCEEEEEECCCCCeEEE
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM----------DTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~----------~~~~~V~~l~~s~~~~~l~s 394 (415)
++..+.+|...|.+++|+|++. +|++++ .||.|++||+.+++.+..+ .+...|.+++|+|++++|++
T Consensus 1119 ~~~~l~~h~~~v~~~~~s~dg~-~lat~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s 1195 (1249)
T 3sfz_A 1119 PLHELKGHNGCVRCSAFSLDGI-LLATGD--DNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVS 1195 (1249)
T ss_dssp CSBCCCCCSSCEEEEEECSSSS-EEEEEE--TTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEE
T ss_pred eeeeeccCCCcEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEE
Confidence 9999999999999999999997 777776 8999999999999877654 36678999999999999988
Q ss_pred EEecCCCcEEEEECCCCccc
Q 014934 395 THGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s~~~l 414 (415)
++ |.|++||+.+++.+
T Consensus 1196 --~~--g~v~vwd~~~g~~~ 1211 (1249)
T 3sfz_A 1196 --AG--GYLKWWNVATGDSS 1211 (1249)
T ss_dssp --ES--SSEEEBCSSSCBCC
T ss_pred --CC--CeEEEEECCCCcee
Confidence 42 89999999887653
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=225.78 Aligned_cols=241 Identities=13% Similarity=0.131 Sum_probs=177.9
Q ss_pred cCCCCCCCcceeEeecCC-Cc---EEEEEcCCeEEEEECCCC---CeEEeEecCCC------------------------
Q 014934 160 DAPALQDDFYLNLVDWSS-HN---VLAVGLGNCVYLWNACSS---KVTKLCDLGID------------------------ 208 (415)
Q Consensus 160 d~~~l~~~~~i~~l~ws~-~~---~la~~~d~~V~iwd~~~~---~~~~~~~~~~~------------------------ 208 (415)
..|.-.....+.++-|-. +. .++++.+..|.+|+..++ +...... .|.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~ 110 (356)
T 2w18_A 32 KNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWH-FAEVPVLQIVPVPDVYNLVCVALGNLE 110 (356)
T ss_dssp CCCCSSCEEEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEE-CCSSCEEEECCCTTCCSCEEEEECSSS
T ss_pred cCCCCCeEEEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEe-ccCceeEEEEEcCcccceeeeeecccc
Confidence 334333334577788876 32 778888999999999988 4444433 222
Q ss_pred -CCeEEEEEcCC----CCeEEEEEC--------------------CCcEEEEEC-CCCeeeEEecCCCccEEEEEeeC--
Q 014934 209 -DSVCSVGWANR----NTHLAVGTS--------------------HGKVQIWDA-SRCKRVRTMEGHRLRVGALAWSS-- 260 (415)
Q Consensus 209 -~~V~~v~~sp~----g~~la~g~~--------------------dg~V~iwd~-~~~~~~~~l~~h~~~V~~l~~~~-- 260 (415)
..|.+++++|+ ++++++++. |+.|++|++ .+++.+..+.+|...+..++|++
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ 190 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence 25778888889 888887663 778888888 44777777777777777777763
Q ss_pred ---CEEEEEeCCCcEEEEECCCCCccEEEecccc---CCeEEEEEeCCCCEE------------EEEeCCCcEEEEECCC
Q 014934 261 ---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHK---SEVCGLKWSYDNREL------------ASGGNDNRLFVWNQHS 322 (415)
Q Consensus 261 ---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~---~~V~~l~~spdg~~l------------asg~~dg~I~iwd~~~ 322 (415)
..|++|+.|++|++||+.+++ .+..+.+|. ..+++++|+|+|.++ ++|+.|++|++||..+
T Consensus 191 g~~~~LaSgS~D~TIkIWDl~TGk-~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 191 GMQEALLGTTIMNNIVIWNLKTGQ-LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp TSTTEEEEEETTSEEEEEETTTCC-EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred CCCceEEEecCCCcEEEEECCCCc-EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 789999999999999999987 577777654 468888999999886 6688899999999999
Q ss_pred CceeEEe-----ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCE-EEEEECCCCCeEEEE
Q 014934 323 TQPVLKY-----CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQV-CNLVWSKNVNELVST 395 (415)
Q Consensus 323 ~~~~~~~-----~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V-~~l~~s~~~~~l~s~ 395 (415)
++.+..+ .+|...+.+..++ +. ++++++ .|++|+|||+.+|+++.++. |...+ ..++|+|+|++|++
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS--~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS- 343 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAIL--TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA- 343 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEE--TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE-
T ss_pred CEEEEEEEeeccCCCcceeEccccC--CC-EEEEEc--CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE-
Confidence 9887665 3676665555554 43 788887 89999999999999999997 44444 46899999999999
Q ss_pred EecCCCcEEEEECC
Q 014934 396 HGYSQNQIIVWRYP 409 (415)
Q Consensus 396 ~g~~dg~I~vw~~~ 409 (415)
|+.|++|+|||+.
T Consensus 344 -GS~D~TIklWd~~ 356 (356)
T 2w18_A 344 -GQKDGNIFVYHYS 356 (356)
T ss_dssp -ECTTSCEEEEEEC
T ss_pred -EECCCcEEEecCC
Confidence 8899999999963
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=236.17 Aligned_cols=221 Identities=16% Similarity=0.252 Sum_probs=189.2
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCCeeeEEec-------------CCCc
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKRVRTME-------------GHRL 251 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~~~~~~l~-------------~h~~ 251 (415)
+..+++|+...++....+. +|.+.|++++|+| ++++||+|+.||.|++||+.+++....+. +|..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVER-IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECC-CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeee-ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 3456778777777766665 7999999999999 99999999999999999998876544432 5999
Q ss_pred cEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC---CCCEEEEEeCCCcEEEEECCCCce
Q 014934 252 RVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY---DNRELASGGNDNRLFVWNQHSTQP 325 (415)
Q Consensus 252 ~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp---dg~~lasg~~dg~I~iwd~~~~~~ 325 (415)
.|.+++|++ .+|++++.||.|++||++... ....+. +...+.++.|+| ++.+|++|+.|+.|++||+++++.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 178 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ-TADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC 178 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTE-EEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc-cceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence 999999984 589999999999999999876 344443 778899999998 445999999999999999999999
Q ss_pred eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-EEEEe----------------eCCCCEEEEEECCC
Q 014934 326 VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCM----------------DTGSQVCNLVWSKN 388 (415)
Q Consensus 326 ~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-~~~~~----------------~~~~~V~~l~~s~~ 388 (415)
+..+..|...|.+++|+|++.+++++++ .|+.|++||++++. .+..+ .+...|.+++|+|+
T Consensus 179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSPRYDYILATAS--ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp CEEECCCCSCEEEEEECSSCTTEEEEEE--TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred eeeecCCCCcEEEEEECCCCCcEEEEEc--CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 9999999999999999999998888887 89999999998765 33333 35678999999999
Q ss_pred CCeEEEEEecCCCcEEEEECCCCcc
Q 014934 389 VNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+++|++ ++.||.|++||+.+.+.
T Consensus 257 ~~~l~~--~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 257 GLHLLT--VGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp SSEEEE--EETTSCEEEEETTTCCB
T ss_pred CCEEEE--ecCCCeEEEEECCCCcc
Confidence 999999 77899999999988764
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-27 Score=254.18 Aligned_cols=232 Identities=12% Similarity=0.137 Sum_probs=191.2
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
..|++++|+| +.+||+| .|+.|+||+..+.+.... ..|...|.+++|+| |++|++++.|++|+|||+.+++.+..
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~--~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~ 94 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK--LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTT 94 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE--CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE--cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEE
Confidence 3589999999 7888888 589999999887665443 36788999999999 88999999999999999999998888
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccE----------EEeccccCCeEEEEEeCC-CCEEEEEeCC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFV----------SKLSGHKSEVCGLKWSYD-NRELASGGND 312 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~----------~~~~~h~~~V~~l~~spd-g~~lasg~~d 312 (415)
+. |...|.+++|+ +++|++|+.||.|++||++...... ..+.+|...|.+++|+|+ +.+|++|+.|
T Consensus 95 ~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d 173 (902)
T 2oaj_A 95 VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY 173 (902)
T ss_dssp EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS
T ss_pred Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC
Confidence 86 77899999998 5899999999999999998775211 123678999999999996 5789999999
Q ss_pred CcEEEEECCCCceeEEeccC------------------CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE-
Q 014934 313 NRLFVWNQHSTQPVLKYCEH------------------TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC- 373 (415)
Q Consensus 313 g~I~iwd~~~~~~~~~~~~h------------------~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~- 373 (415)
+.| +||+++++++..+..| ...|.+++|+|++. +|++++ .|+.|++||+.+++++..
T Consensus 174 g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs--~Dg~i~lWd~~~g~~~~~r 249 (902)
T 2oaj_A 174 VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIH--EDNSLVFWDANSGHMIMAR 249 (902)
T ss_dssp CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEE--TTCCEEEEETTTCCEEEEE
T ss_pred CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEE--CCCeEEEEECCCCcEEEEE
Confidence 999 9999999988888765 57799999999987 777777 899999999999988764
Q ss_pred -ee-----------------CCCCEEEEEEC----CCCCeEEEEEecCC-----CcEEEEEC
Q 014934 374 -MD-----------------TGSQVCNLVWS----KNVNELVSTHGYSQ-----NQIIVWRY 408 (415)
Q Consensus 374 -~~-----------------~~~~V~~l~~s----~~~~~l~s~~g~~d-----g~I~vw~~ 408 (415)
+. +...|.+++|+ |++..++++ |+.+ +.|.+|++
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~s-g~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS-HKSISRGDNQSLTMIDL 310 (902)
T ss_dssp CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEE-EECSTTSSCCCEEEEEE
T ss_pred eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEe-CCCCCCCCCceEEEEec
Confidence 21 12369999995 454455444 4333 37888884
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=223.89 Aligned_cols=203 Identities=17% Similarity=0.315 Sum_probs=174.5
Q ss_pred cCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC----eeeEEecCCCccEEEEEee----CCEEEEEeCCCcEEEEE
Q 014934 205 LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC----KRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRD 276 (415)
Q Consensus 205 ~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~----~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd 276 (415)
.+|.+.|++++|+|++++||+|+.||.|++||+.++ +.+..+.+|...|.+++|+ +.+|++|+.||.|++||
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 389999999999999999999999999999999876 5677788999999999997 47999999999999999
Q ss_pred CCCCC--------ccEEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEECCCCceeEEec-------------cCC
Q 014934 277 IRAQE--------DFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHSTQPVLKYC-------------EHT 333 (415)
Q Consensus 277 ~~~~~--------~~~~~~~~h~~~V~~l~~spd--g~~lasg~~dg~I~iwd~~~~~~~~~~~-------------~h~ 333 (415)
++.+. .....+.+|...|.+++|+|+ +++|++++.||.|++||+++++.+..+. .|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL 167 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc
Confidence 98764 346778899999999999999 9999999999999999998876544332 588
Q ss_pred CcEEEEEEcCC--CCcEEEEEcCCCCCeEEEEECCCCcE--EEEee-CCCCEEEEEECCCC----CeEEEEEecCCCcEE
Q 014934 334 AAVKAIAWSPH--LHGLLASGGGTADRCIRFWNTTTNTH--LSCMD-TGSQVCNLVWSKNV----NELVSTHGYSQNQII 404 (415)
Q Consensus 334 ~~V~~l~~sp~--~~~llasggg~~d~~I~iwd~~t~~~--~~~~~-~~~~V~~l~~s~~~----~~l~s~~g~~dg~I~ 404 (415)
..+.+++|+|+ ...++++++ .|+.+.+|+...++. +..+. +...|.+++|+|++ ++|++ |+.||.|+
T Consensus 168 ~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s--~~~dg~i~ 243 (351)
T 3f3f_A 168 QSDFCLSWCPSRFSPEKLAVSA--LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT--GCKDGRIR 243 (351)
T ss_dssp CCCEEEEECCCSSSCCEEEEEE--TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE--EETTSCEE
T ss_pred cceeEEEeccCCCCCcEEEEec--CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE--EcCCCeEE
Confidence 89999999997 234677766 799999998888775 44443 67889999999998 67877 77999999
Q ss_pred EEECCCC
Q 014934 405 VWRYPTM 411 (415)
Q Consensus 405 vw~~~s~ 411 (415)
+||+.+.
T Consensus 244 iwd~~~~ 250 (351)
T 3f3f_A 244 IFKITEK 250 (351)
T ss_dssp EEEEEEC
T ss_pred EEeCCCC
Confidence 9998764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=229.23 Aligned_cols=231 Identities=9% Similarity=0.042 Sum_probs=178.5
Q ss_pred eeEeecCCCcEEEEEcCCeEEEEECC---------CCCeEEeEecCCCCCeEEEEEcC--CCCeEEEEECCCcEEEEECC
Q 014934 170 LNLVDWSSHNVLAVGLGNCVYLWNAC---------SSKVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 170 i~~l~ws~~~~la~~~d~~V~iwd~~---------~~~~~~~~~~~~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~ 238 (415)
++++.|+|. +++++.|+.|++|+.. ++++......+|.+.|.+++|+| ++++|++|+.||.|++||+.
T Consensus 79 v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~ 157 (343)
T 3lrv_A 79 PRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE 157 (343)
T ss_dssp CCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS
T ss_pred ceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC
Confidence 456677777 5555578888888554 66666666667888999999999 99999999999999999999
Q ss_pred CCeeeEEec-CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEecc-ccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 239 RCKRVRTME-GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSG-HKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 239 ~~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
+++.+.... .|...|.+++|+ +.+|++|+.||.|++||++++......+.. |...|.+++|+|++.+|++++ |+.
T Consensus 158 ~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~ 236 (343)
T 3lrv_A 158 DDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQT 236 (343)
T ss_dssp SSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSB
T ss_pred CCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCe
Confidence 998877664 455689999998 579999999999999999998754367777 999999999999999999999 559
Q ss_pred EEEEECCCCceeEEecc---CCCcEE--EEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECC--
Q 014934 315 LFVWNQHSTQPVLKYCE---HTAAVK--AIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSK-- 387 (415)
Q Consensus 315 I~iwd~~~~~~~~~~~~---h~~~V~--~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~-- 387 (415)
|++||+++++.+..+.. |...+. +++|+|+++ +|+++++ .|+.|++|++.++...... .++..+.|.+
T Consensus 237 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~s~-~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~ 311 (343)
T 3lrv_A 237 VVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK-NMIAYSN-ESNSLTIYKFDKKTKNWTK---DEESALCLQSDT 311 (343)
T ss_dssp EEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS-EEEEEET-TTTEEEEEEECTTTCSEEE---EEEEECCC----
T ss_pred EEEEEcCCCCcceeecccccccccccceEEEECCCCC-EEEEecC-CCCcEEEEEEcccccceEe---cCceeEecCccc
Confidence 99999999877655443 444444 699999998 5555431 4999999999766543332 5677788888
Q ss_pred -CCCeEEEEEecCCCcEEEEECC
Q 014934 388 -NVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 388 -~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+...+++ ++.|+.+.++-..
T Consensus 312 ~~~~~l~~--~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 312 ADFTDMDV--VCGDGGIAAILKT 332 (343)
T ss_dssp CCCCEEEE--EEETTEEEEEEEC
T ss_pred cccceeEE--EecCCceEEEEec
Confidence 7888888 5678888877543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=256.56 Aligned_cols=202 Identities=12% Similarity=0.194 Sum_probs=176.3
Q ss_pred ecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCc
Q 014934 204 DLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQED 282 (415)
Q Consensus 204 ~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~ 282 (415)
..+|.+.|++++|+|+|++||+|+.||.|+|||..+.+....+. |...|.+++|+ +.+|++++.|++|++||++++.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~- 90 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQK- 90 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEETTTEEEEEETTCEEEEEETTTCS-
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCc-
Confidence 34788999999999999999999999999999998877766554 78899999999 4679999999999999999876
Q ss_pred cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee-----------EEeccCCCcEEEEEEcCCCCcEEEE
Q 014934 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV-----------LKYCEHTAAVKAIAWSPHLHGLLAS 351 (415)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~-----------~~~~~h~~~V~~l~~sp~~~~llas 351 (415)
.+..+. |...|.+++|+|++++|++|+.||.|++||+.+++.. ..+.+|.+.|.+++|+|++..++++
T Consensus 91 ~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~ 169 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI 169 (902)
T ss_dssp EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE
Confidence 455554 6789999999999999999999999999999988653 2235789999999999986567888
Q ss_pred EcCCCCCeEEEEECCCCcEEEEeeCC-------------------CCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 352 GGGTADRCIRFWNTTTNTHLSCMDTG-------------------SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 352 ggg~~d~~I~iwd~~t~~~~~~~~~~-------------------~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
++ .|+.| +||+++++++..+... ..|.+++|+|+|++|++ |+.|+.|++||+.+++
T Consensus 170 g~--~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las--gs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 170 SY--EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT--IHEDNSLVFWDANSGH 244 (902)
T ss_dssp EC--SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE--EETTCCEEEEETTTCC
T ss_pred Ee--CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE--EECCCeEEEEECCCCc
Confidence 76 89999 9999999988877533 67999999999999999 7899999999998865
Q ss_pred c
Q 014934 413 K 413 (415)
Q Consensus 413 ~ 413 (415)
.
T Consensus 245 ~ 245 (902)
T 2oaj_A 245 M 245 (902)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-26 Score=219.94 Aligned_cols=238 Identities=13% Similarity=0.063 Sum_probs=196.9
Q ss_pred ceeEeecCC-CcEE-EEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCeeeE
Q 014934 169 YLNLVDWSS-HNVL-AVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVR 244 (415)
Q Consensus 169 ~i~~l~ws~-~~~l-a~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~~~ 244 (415)
.+.+++|+| +..| +++ .++.|++||..+++....+.. ...+.+++|+|+|++|++++ .++.|++||+.+++.+.
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC--CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence 378999999 5555 455 589999999999998877753 34999999999999886555 56999999999999888
Q ss_pred EecCCCccEEEEEeeC--CEE-EEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEE-EEEeCCCcEEEEEC
Q 014934 245 TMEGHRLRVGALAWSS--SLL-SSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL-ASGGNDNRLFVWNQ 320 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~--~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-asg~~dg~I~iwd~ 320 (415)
.+..+ ..+.+++|++ +.| ++++.|+.|++||+++++ ....+..| ..+.+++|+|++++| ++++.++.|++||+
T Consensus 111 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~ 187 (391)
T 1l0q_A 111 TVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDT 187 (391)
T ss_dssp EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 88754 4689999984 455 788889999999998876 45555544 567999999999987 57788999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCC
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
++++.+..+ .+...+.+++|+|+++.+++++.+..++.|++||+.+++.+..+..+..+.+++|+|++++|+++ +..|
T Consensus 188 ~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s-~~~d 265 (391)
T 1l0q_A 188 VTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVA-LSFX 265 (391)
T ss_dssp TTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEE-ETTT
T ss_pred CCCeEEEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEE-cCCC
Confidence 999887777 45678999999999987777653224899999999999999998888889999999999988654 5789
Q ss_pred CcEEEEECCCCcc
Q 014934 401 NQIIVWRYPTMSK 413 (415)
Q Consensus 401 g~I~vw~~~s~~~ 413 (415)
+.|++||+.+++.
T Consensus 266 ~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 266 NTVSVIDTATNTI 278 (391)
T ss_dssp TEEEEEETTTTEE
T ss_pred CEEEEEECCCCcE
Confidence 9999999988653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-26 Score=226.75 Aligned_cols=239 Identities=13% Similarity=0.048 Sum_probs=201.5
Q ss_pred eeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEec----CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 170 LNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDL----GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~----~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
+.+++|+| +.+++++. ++.|++||..+++....... +|...|.+++|+++|.++++++.||.|++||+.+++.+
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence 55889998 45555554 56899999999988764432 67789999999999999999999999999999999999
Q ss_pred EEecCCCccEEEEEeeC--CEE-EEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe--------CC
Q 014934 244 RTMEGHRLRVGALAWSS--SLL-SSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG--------ND 312 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~~--~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~--------~d 312 (415)
..+..|...+.+++|++ ..+ ++++.|+.|++||++++. .+..+.. ...+.+++|+|++++|++++ .|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~d 282 (433)
T 3bws_A 205 ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL-EIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGG 282 (433)
T ss_dssp EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-EEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-EEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCC
Confidence 99988999999999994 555 566689999999999876 4555554 45599999999999999988 58
Q ss_pred CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeE
Q 014934 313 NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNEL 392 (415)
Q Consensus 313 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l 392 (415)
+.|++||+.+++.+..+ .|...+.+++|+|+++.++++++ .|+.|++||+.+++.+..+.+...+.+++|+|+++.|
T Consensus 283 g~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 359 (433)
T 3bws_A 283 GRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM--CCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYL 359 (433)
T ss_dssp EEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEET--TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEE
T ss_pred CeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEec--CCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEE
Confidence 89999999998877665 56678999999999988888876 7999999999999999999888999999999999988
Q ss_pred EEEEecC-------------CCcEEEEECCCCcc
Q 014934 393 VSTHGYS-------------QNQIIVWRYPTMSK 413 (415)
Q Consensus 393 ~s~~g~~-------------dg~I~vw~~~s~~~ 413 (415)
+++.... ||.|++||..+++.
T Consensus 360 ~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 360 YVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred EEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 8853221 57999999988654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=221.89 Aligned_cols=216 Identities=16% Similarity=0.251 Sum_probs=172.7
Q ss_pred EECCCCCeEEeEecCCCCCeEEEEEcCC---CCeEEEEECCCcEEEEECCC-Ceee-EEecCCCccEEEEEee--CCEEE
Q 014934 192 WNACSSKVTKLCDLGIDDSVCSVGWANR---NTHLAVGTSHGKVQIWDASR-CKRV-RTMEGHRLRVGALAWS--SSLLS 264 (415)
Q Consensus 192 wd~~~~~~~~~~~~~~~~~V~~v~~sp~---g~~la~g~~dg~V~iwd~~~-~~~~-~~l~~h~~~V~~l~~~--~~~l~ 264 (415)
|+....+....+. +|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|.+++|+ +++|+
T Consensus 24 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 24 DNHNPMKDIEVTS-SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CSSCTTCCEECSS-CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred CCCCCcceeEecc-CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 3444444455544 88999999999999 69999999999999999987 5444 7788999999999998 47999
Q ss_pred EEeCCCcEEEEECCCCCccEEEeccccCCeEEEEE--eCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC---------
Q 014934 265 SGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKW--SYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHT--------- 333 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~--spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~--------- 333 (415)
+|+.||.|++||+++.. ...+..|...|.+++| +|++++|++|+.||.|++||+++++++..+..|.
T Consensus 103 s~~~dg~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQ--AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 180 (368)
T ss_dssp EEETTSEEEEEETTTTE--EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET
T ss_pred EEcCCCcEEEEEcCCCC--ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC
Confidence 99999999999999876 3346679999999999 8999999999999999999999988777765443
Q ss_pred --------------------------------CcEEEEEEcCCCCc---EEEEEcCCCCCeEEEEECCCC---cEEEEee
Q 014934 334 --------------------------------AAVKAIAWSPHLHG---LLASGGGTADRCIRFWNTTTN---THLSCMD 375 (415)
Q Consensus 334 --------------------------------~~V~~l~~sp~~~~---llasggg~~d~~I~iwd~~t~---~~~~~~~ 375 (415)
..+.++++.+.... .+++++ .|+.|++||+... ..+..+.
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS--IEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE--TTSEEEEEESSCSCHHHHSEEEE
T ss_pred CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec--CCCcEEEEecCCCCccccceeee
Confidence 22334444433321 266665 7999999999887 4444544
Q ss_pred CCC-------------CEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 376 TGS-------------QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 376 ~~~-------------~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
... .|.+++|+|++++|++ |+.||.|++||+.+++.+
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s--~~~dg~i~iwd~~~~~~~ 308 (368)
T 3mmy_A 259 CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLAT--VGSDGRFSFWDKDARTKL 308 (368)
T ss_dssp CSEEC----CCCEEECCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEE
T ss_pred eeecccccccccccccceEEEEEecCCCEEEE--EccCCeEEEEECCCCcEE
Confidence 322 6999999999999998 778999999999987643
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=222.62 Aligned_cols=229 Identities=14% Similarity=0.150 Sum_probs=178.2
Q ss_pred eeEeecCC-CcEE-EEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC-eeeEE
Q 014934 170 LNLVDWSS-HNVL-AVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC-KRVRT 245 (415)
Q Consensus 170 i~~l~ws~-~~~l-a~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~-~~~~~ 245 (415)
+..++|.+ .+.+ +++ .++.|++||..+++....+. +...|.+++|++++ ++++ .++.|++||+.++ +.+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~ 135 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITD 135 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSC
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEE
Confidence 44555655 4444 334 46799999999998877665 56799999998764 4444 4789999999988 66665
Q ss_pred ecCCCccEEEEEeeCCEEEE--EeCCCcEEEEECCCCC--------------cc-EEEeccccCCeEEEEEeCCCCEEEE
Q 014934 246 MEGHRLRVGALAWSSSLLSS--GSRDKSILQRDIRAQE--------------DF-VSKLSGHKSEVCGLKWSYDNRELAS 308 (415)
Q Consensus 246 l~~h~~~V~~l~~~~~~l~s--gs~dg~I~iwd~~~~~--------------~~-~~~~~~h~~~V~~l~~spdg~~las 308 (415)
+.. ....+++++..++. |+.||.|++||++... .+ +..+.+|...|.+++|+|+|++||+
T Consensus 136 ~~~---~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s 212 (355)
T 3vu4_A 136 DIR---FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT 212 (355)
T ss_dssp CEE---EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ecc---CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE
Confidence 554 44445555677776 5899999999998754 11 5778899999999999999999999
Q ss_pred EeCCCc-EEEEECCCCceeEEec-c-CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE--EE----------
Q 014934 309 GGNDNR-LFVWNQHSTQPVLKYC-E-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL--SC---------- 373 (415)
Q Consensus 309 g~~dg~-I~iwd~~~~~~~~~~~-~-h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~--~~---------- 373 (415)
|+.|++ |+|||+++++.+..+. + |...|.+++|+|++. +|++++ .|+.|++||+..+... ..
T Consensus 213 ~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s--~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 289 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGS-KLAVVS--DKWTLHVFEIFNDQDNKRHALKGWINMKYF 289 (355)
T ss_dssp EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSC-EEEEEE--TTCEEEEEESSCCSCCCSEETTTTEECCCC
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCC-EEEEEE--CCCEEEEEEccCCCCcccccccceeecccc
Confidence 999998 9999999999999998 5 999999999999997 666766 7999999999765311 11
Q ss_pred ----------ee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 374 ----------MD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 374 ----------~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+. .....+.++|+++++.|++ +..||.+.+|++...
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~--~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 290 QSEWSLCNFKLSVDKHVRGCKIAWISESSLVVV--WPHTRMIETFKVVFD 337 (355)
T ss_dssp CCSSCSEEEECCCCTTCCCCEEEESSSSEEEEE--ETTTTEEEEEEEEEE
T ss_pred ccccceeEEEeccCCCCCceEEEEeCCCCEEEE--EeCCCeEEEEEEEcC
Confidence 11 1122467999999999999 788999999998653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-25 Score=218.48 Aligned_cols=236 Identities=14% Similarity=0.081 Sum_probs=197.4
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~~~~ 245 (415)
.+++++|++ +.+++++ .++.|++||+.+++....+. .|...+.+++|+|+++++++++ .+|.|++||+.+++.+..
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~ 249 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD-LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK 249 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE-CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc-CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE
Confidence 688999988 6777777 46999999999998877776 6788999999999999885554 799999999999998888
Q ss_pred ecCCCccEEEEEee--CCEEEEEe--------CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEE-EEEeCCCc
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGS--------RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL-ASGGNDNR 314 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs--------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-asg~~dg~ 314 (415)
+..+ ..+.+++|+ ++.|++++ .||.|++||++++. .... ..|...+.+++|+|+++.+ ++++.|+.
T Consensus 250 ~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 326 (433)
T 3bws_A 250 TDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK-LIDT-IGPPGNKRHIVSGNTENKIYVSDMCCSK 326 (433)
T ss_dssp CCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE-EEEE-EEEEECEEEEEECSSTTEEEEEETTTTE
T ss_pred ecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc-EEee-ccCCCCcceEEECCCCCEEEEEecCCCE
Confidence 8754 459999998 46888887 58899999999875 3333 3566789999999999754 66789999
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCC------------CCCeEEEEECCCCcEEEEeeCCCCEEE
Q 014934 315 LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGT------------ADRCIRFWNTTTNTHLSCMDTGSQVCN 382 (415)
Q Consensus 315 I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~------------~d~~I~iwd~~t~~~~~~~~~~~~V~~ 382 (415)
|++||+.+++.+..+. +...+.+++|+|+++.+++++.+. .||.|++||+.+++.+..+..+..+.+
T Consensus 327 v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~ 405 (433)
T 3bws_A 327 IEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTG 405 (433)
T ss_dssp EEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEE
T ss_pred EEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCce
Confidence 9999999998887774 778899999999998666665421 167999999999999999988889999
Q ss_pred EEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 383 LVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 383 l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
++|+|++++|+++ +..|+.|++|++..
T Consensus 406 ~~~s~dg~~l~~~-~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 406 LDVSPDNRYLVIS-DFLDHQIRVYRRDG 432 (433)
T ss_dssp EEECTTSCEEEEE-ETTTTEEEEEEETT
T ss_pred EEEcCCCCEEEEE-ECCCCeEEEEEecC
Confidence 9999999999874 44599999999875
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-25 Score=217.27 Aligned_cols=226 Identities=14% Similarity=0.096 Sum_probs=188.6
Q ss_pred EEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeE-EEEECCCcEEEEECCCCeeeEEecCCCccEEEEE
Q 014934 180 VLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALA 257 (415)
Q Consensus 180 ~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~l-a~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~ 257 (415)
+++++ .++.|++||+.+++....+. . ...+.+++|+|+|++| ++++.++.|++||+.+++.+..+..+. .+.+++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIP-V-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEE-C-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEee-c-CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 44555 57999999999998887775 3 3569999999999977 566689999999999999988887655 899999
Q ss_pred ee--CCEE-EEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceeEEeccCC
Q 014934 258 WS--SSLL-SSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL-ASGGNDNRLFVWNQHSTQPVLKYCEHT 333 (415)
Q Consensus 258 ~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-asg~~dg~I~iwd~~~~~~~~~~~~h~ 333 (415)
|+ ++.| ++++.++.|++||+.+++ .+..+.. ...+.+++|+|++++| ++++.|+.|++||+.+++.+..+..|
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~-~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~- 157 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG- 157 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCe-EEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-
Confidence 98 4555 556678999999999876 4555544 4578999999999987 67888999999999999988888655
Q ss_pred CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEec-CCCcEEEEECCCCc
Q 014934 334 AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY-SQNQIIVWRYPTMS 412 (415)
Q Consensus 334 ~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~-~dg~I~vw~~~s~~ 412 (415)
..+.+++|+|+++.++++++ .++.|++||+.+++.+..+.+...+.+++|+|++++|+++... .++.|++||+.+++
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp SSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred CCcceEEECCCCCEEEEEeC--CCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence 46799999999987877776 7899999999999999988888899999999999999885211 68999999998765
Q ss_pred c
Q 014934 413 K 413 (415)
Q Consensus 413 ~ 413 (415)
.
T Consensus 236 ~ 236 (391)
T 1l0q_A 236 I 236 (391)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-26 Score=243.20 Aligned_cols=202 Identities=19% Similarity=0.340 Sum_probs=176.2
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC--CCeeeEEecCCCccEEEEEee----CCEEEEEeCCCcEEEEECCC
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS--RCKRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRA 279 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~--~~~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~ 279 (415)
+|.+.|++++|+|+|++|++|+.||.|+|||+. +++.+..+.+|...|.+++|+ +++|++|+.||.|++||+++
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 899999999999999999999999999999997 567788899999999999997 57999999999999999988
Q ss_pred CC-ccEEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEECCCC--ceeEEeccCCCcEEEEEEcCC----------
Q 014934 280 QE-DFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHST--QPVLKYCEHTAAVKAIAWSPH---------- 344 (415)
Q Consensus 280 ~~-~~~~~~~~h~~~V~~l~~spd--g~~lasg~~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~sp~---------- 344 (415)
+. .....+.+|...|.+++|+|+ +++|++|+.||.|++||++++ .....+.+|...|.+++|+|.
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~ 166 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccccc
Confidence 74 245677889999999999999 999999999999999999877 345567789999999999994
Q ss_pred ---CCcEEEEEcCCCCCeEEEEECCCCc----EEEEee-CCCCEEEEEECCC---CCeEEEEEecCCCcEEEEECCCCc
Q 014934 345 ---LHGLLASGGGTADRCIRFWNTTTNT----HLSCMD-TGSQVCNLVWSKN---VNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 345 ---~~~llasggg~~d~~I~iwd~~t~~----~~~~~~-~~~~V~~l~~s~~---~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+. ++++++ .||.|++||++++. .+..+. |...|.+++|+|+ +..|++ |+.||.|++||+.+.+
T Consensus 167 ~~d~~-~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s--~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 167 TKESR-KFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp CGGGC-CEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EESSSCEEEEEESSSS
T ss_pred CCCCC-EEEEEE--CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE--EecCCEEEEecCCCCC
Confidence 55 666666 79999999998874 334443 6788999999999 888888 7789999999998753
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-26 Score=227.04 Aligned_cols=218 Identities=10% Similarity=0.131 Sum_probs=173.5
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCC-----CeEEEEEcCCCCeEEEEECCCcEEEEECCC
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDD-----SVCSVGWANRNTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~-----~V~~v~~sp~g~~la~g~~dg~V~iwd~~~ 239 (415)
.-+|.+++||| +..||++ .++.|++|+..+ +...+ .|.. .|.+++|+|||++||+|+.||+|+|||+.+
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l--~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~ 160 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL--DSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK 160 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC--CCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec--cCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 45799999999 7777776 689999999644 33333 3433 599999999999999999999999999988
Q ss_pred Ce-------eeEEe----cCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCc--cEEEe-ccccCCeEEEEEeCCCCE
Q 014934 240 CK-------RVRTM----EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQED--FVSKL-SGHKSEVCGLKWSYDNRE 305 (415)
Q Consensus 240 ~~-------~~~~l----~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~-~~h~~~V~~l~~spdg~~ 305 (415)
++ .+.++ .+|...|.+++|+|+-+++++.|++|++||+..... ....+ .+|...|.+++|+ |+.
T Consensus 161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~ 238 (588)
T 2j04_A 161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYK 238 (588)
T ss_dssp CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTE
T ss_pred CccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCE
Confidence 75 35666 678889999999965599999999999999987763 23455 4788999999999 689
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEE--cCCCCcEEEEEcCCCCCeEEEEECCC----------------
Q 014934 306 LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW--SPHLHGLLASGGGTADRCIRFWNTTT---------------- 367 (415)
Q Consensus 306 lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~--sp~~~~llasggg~~d~~I~iwd~~t---------------- 367 (415)
||+++ ++.|++||+.+++......+|.+.|..++| +|++. .+++++ +||+ ++|....
T Consensus 239 LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~-~La~a~--edG~-klw~~d~~~~spd~~l~a~~d~~ 313 (588)
T 2j04_A 239 VVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKEST-ILLMSN--KTSY-KVLLEDELHVTADNIIAPYLEKK 313 (588)
T ss_dssp EEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCE-EEEECS--SCEE-EEEESSSEEEECCCSSHHHHHHH
T ss_pred EEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCC-EEEEEc--CCCC-EEEeeccEEECCCceEEEEcCCE
Confidence 99997 699999999988774333389999999999 99986 667765 7999 9998741
Q ss_pred -------CcEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 368 -------NTHLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 368 -------~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
+..+..+++...|.+++|+|||+.+|++
T Consensus 314 v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~ 348 (588)
T 2j04_A 314 FKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIV 348 (588)
T ss_dssp HHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCceeeeccceEEEEEEECCCCCEEEEE
Confidence 1111122222348999999999999984
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-25 Score=216.28 Aligned_cols=240 Identities=10% Similarity=0.116 Sum_probs=165.5
Q ss_pred eeEeecC---C--CcEEEEEcCCeEEEEECCCCC--------eEEeEecCCCCCeEEEEEc-------------------
Q 014934 170 LNLVDWS---S--HNVLAVGLGNCVYLWNACSSK--------VTKLCDLGIDDSVCSVGWA------------------- 217 (415)
Q Consensus 170 i~~l~ws---~--~~~la~~~d~~V~iwd~~~~~--------~~~~~~~~~~~~V~~v~~s------------------- 217 (415)
..++.|. + .+++++|.++.|.+|+..... ...+....+...+..+.|+
T Consensus 18 p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (393)
T 4gq1_A 18 PYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSS 97 (393)
T ss_dssp EEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------C
T ss_pred CeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeec
Confidence 3455563 3 579999999999999753211 1112222334455555544
Q ss_pred -CCCCeEEEEECCCcEEEEECCCCeee-----EEecCCCccEEEEEeeC----------CEEEEEeCCCcEEEEECCCCC
Q 014934 218 -NRNTHLAVGTSHGKVQIWDASRCKRV-----RTMEGHRLRVGALAWSS----------SLLSSGSRDKSILQRDIRAQE 281 (415)
Q Consensus 218 -p~g~~la~g~~dg~V~iwd~~~~~~~-----~~l~~h~~~V~~l~~~~----------~~l~sgs~dg~I~iwd~~~~~ 281 (415)
+++.+||+|+.|++|+|||+.+++.. ..+.+|.+.|.+++|++ ++|++|+.|++|++||++...
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~ 177 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG 177 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence 35568999999999999999887643 33679999999999963 699999999999999998876
Q ss_pred ccEEEeccccCCeEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeEE-------------------------eccCCCc
Q 014934 282 DFVSKLSGHKSEVCGLKWSYDNR-ELASGGNDNRLFVWNQHSTQPVLK-------------------------YCEHTAA 335 (415)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~spdg~-~lasg~~dg~I~iwd~~~~~~~~~-------------------------~~~h~~~ 335 (415)
....+.+|...|.+++|+|++. +|++|+.|+.|++||+++++.... ..+|...
T Consensus 178 -~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 256 (393)
T 4gq1_A 178 -PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS 256 (393)
T ss_dssp -EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred -eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence 4566778889999999999874 799999999999999987654322 2357788
Q ss_pred EEEEEEc-CCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCE------------------EEEEECC-CCCeEEE
Q 014934 336 VKAIAWS-PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQV------------------CNLVWSK-NVNELVS 394 (415)
Q Consensus 336 V~~l~~s-p~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V------------------~~l~~s~-~~~~l~s 394 (415)
|.+++|+ |++. .+++++ .|+.+++||+.+++....+. +...+ ....|++ .+..+++
T Consensus 257 v~~v~~~~~dg~-~l~s~s--~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (393)
T 4gq1_A 257 LANVRWIGSDGS-GILAMC--KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT 333 (393)
T ss_dssp CSEEEEETTTTC-EEEEEC--TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEE
T ss_pred ceeeeeecCCCC-EEEEEe--CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEE
Confidence 8999987 6776 666766 89999999998876554432 11111 2223333 3444444
Q ss_pred EEecCCCcEEEEECCCCccc
Q 014934 395 THGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s~~~l 414 (415)
+ |+.||.|++||+.+++.+
T Consensus 334 s-gs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 334 A-HSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp E-ETTTTEEEEEETTCTTCC
T ss_pred E-ECCCCEEEEEECCCCcEE
Confidence 3 889999999999887653
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=197.73 Aligned_cols=182 Identities=13% Similarity=0.049 Sum_probs=141.1
Q ss_pred CCcEEEEEc---CCeEEEEEC-CCCCeEEeEecCCCCCeEEEEEcC---CCCeEEEEECCCcEEEEECCCCeeeEEecCC
Q 014934 177 SHNVLAVGL---GNCVYLWNA-CSSKVTKLCDLGIDDSVCSVGWAN---RNTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 177 ~~~~la~~~---d~~V~iwd~-~~~~~~~~~~~~~~~~V~~v~~sp---~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h 249 (415)
.++++.++. ++.|++|++ .+++...... .|...++.++|++ ++.+||+|+.|++|+|||+.++++++++.+|
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~-~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~ 222 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF-LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID 222 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEE-ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeec-cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC
Confidence 356666654 789999998 4476665554 6778888888888 7799999999999999999999999999865
Q ss_pred C---ccEEEEEeeC--CE------------EEEEeCCCcEEEEECCCCCccEEEe-----ccccCCeEEEEEeCCCCEEE
Q 014934 250 R---LRVGALAWSS--SL------------LSSGSRDKSILQRDIRAQEDFVSKL-----SGHKSEVCGLKWSYDNRELA 307 (415)
Q Consensus 250 ~---~~V~~l~~~~--~~------------l~sgs~dg~I~iwd~~~~~~~~~~~-----~~h~~~V~~l~~spdg~~la 307 (415)
. ..+.+++|++ .+ +++|+.|++|++||..++. .+..+ .+|...+.+..++ +.++|
T Consensus 223 ~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk-~l~v~~~~~p~Gh~~~~lsg~~s--g~~lA 299 (356)
T 2w18_A 223 DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL-SVGVMLYCLPPGQAGRFLEGDVK--DHCAA 299 (356)
T ss_dssp C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE-EEEEEEECCCTTCCCCEEEEEEE--TTEEE
T ss_pred CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE-EEEEEEeeccCCCcceeEccccC--CCEEE
Confidence 4 3566777873 33 3678999999999998876 33333 4676665544444 88999
Q ss_pred EEeCCCcEEEEECCCCceeEEeccCCCcEE-EEEEcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 308 SGGNDNRLFVWNQHSTQPVLKYCEHTAAVK-AIAWSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 308 sg~~dg~I~iwd~~~~~~~~~~~~h~~~V~-~l~~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
+|+.|++|+|||+.+++.+.++.+|...+. .++|+|+|+ +|++|+ .|++|++||+
T Consensus 300 SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~-~LaSGS--~D~TIklWd~ 355 (356)
T 2w18_A 300 AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDS-HLLAGQ--KDGNIFVYHY 355 (356)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSS-EEEEEC--TTSCEEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCC-EEEEEE--CCCcEEEecC
Confidence 999999999999999999999999987665 589999997 777877 8999999985
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-22 Score=199.16 Aligned_cols=216 Identities=13% Similarity=0.073 Sum_probs=172.5
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC---cEEEEECCCCeeeEEecCCCccEEEEEeeC--C
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG---KVQIWDASRCKRVRTMEGHRLRVGALAWSS--S 261 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg---~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~ 261 (415)
+.|++||...+....+. +|...|.+++|+|+|++||+++.++ .|++||+.+++.. .+..|...+.+++|++ +
T Consensus 159 ~~i~i~d~~g~~~~~l~--~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~ 235 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGS 235 (415)
T ss_dssp EEEEEEETTSCSCEEEE--EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSS
T ss_pred ceEEEEcCCCCCCEEEe--CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCC
Confidence 68999999866654443 5778999999999999999999875 8999999988765 4667888999999994 5
Q ss_pred EEE-EEeCCCc--EEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC-C--cEEEEECCCCceeEEeccCCCc
Q 014934 262 LLS-SGSRDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N--RLFVWNQHSTQPVLKYCEHTAA 335 (415)
Q Consensus 262 ~l~-sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d-g--~I~iwd~~~~~~~~~~~~h~~~ 335 (415)
.|+ +++.++. |++||+.++. ...+..|...+.+++|+|||++|++++.+ + .|++||+.+++. ..+..|...
T Consensus 236 ~la~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~ 312 (415)
T 2hqs_A 236 KLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQ 312 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSE
T ss_pred EEEEEEecCCCceEEEEECCCCC--EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCc
Confidence 566 7777665 9999998876 46777888999999999999999988864 4 688889988764 455667788
Q ss_pred EEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCC---cEEEEECCCC
Q 014934 336 VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN---QIIVWRYPTM 411 (415)
Q Consensus 336 V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg---~I~vw~~~s~ 411 (415)
+..++|+|+|+.|++++....+..|++||+.+++... +.....+..++|+|+|+.|+++ +.++ .|++|++...
T Consensus 313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~~~--s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTFLDETPSLAPNGTMVIYS--SSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSSSCEEEEECTTSSEEEEE--EEETTEEEEEEEETTSC
T ss_pred ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCCCcCCeEEcCCCCEEEEE--EcCCCccEEEEEECCCC
Confidence 9999999999966665541113689999999988754 4333489999999999999884 3344 7999998754
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-21 Score=186.47 Aligned_cols=238 Identities=12% Similarity=0.080 Sum_probs=192.2
Q ss_pred ceeEeecCC-CcEEEEEc--------CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECC
Q 014934 169 YLNLVDWSS-HNVLAVGL--------GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDAS 238 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~--------d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~ 238 (415)
.+..++|++ ++.|+++. ++.|++||..+++....+..+ ..+.+++|+|+|++++++. .++.|.+||..
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND--LKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES--SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC--CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 366889999 56666664 568999999999988877643 4578899999999666554 47899999999
Q ss_pred CCeeeEEecCCCc---------cEEEEEee--CCEEEEEe--CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCE
Q 014934 239 RCKRVRTMEGHRL---------RVGALAWS--SSLLSSGS--RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305 (415)
Q Consensus 239 ~~~~~~~l~~h~~---------~V~~l~~~--~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 305 (415)
+++.+..+..+.. .+.+++|+ ++.+++++ .++.|.+||..+.+ ....+..+...+.+++|+|+|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK-LKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE-EEEEECCCCTTCCCCEEETTTTE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc-eEEEecCCCCccceEEECCCCCE
Confidence 9998887765432 27889998 46666655 57889999998876 45566556667889999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEecc----CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEE
Q 014934 306 LASGGNDNRLFVWNQHSTQPVLKYCE----HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVC 381 (415)
Q Consensus 306 lasg~~dg~I~iwd~~~~~~~~~~~~----h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~ 381 (415)
|++++.++.|.+||+.+++.+..+.. +...+..++|+|+++.++++.. .++.|.+||+.+++.+..+..+.. .
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~-~ 275 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS--KAAEVLVVDTRNGNILAKVAAPES-L 275 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES--SSSEEEEEETTTCCEEEEEECSSC-C
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEEEEEcCCC-c
Confidence 99999999999999999988877754 5567889999999998877775 679999999999999888876554 5
Q ss_pred EEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 382 ~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.++|+|++++++++ +..++.|.+||..+++.
T Consensus 276 ~~~~s~dg~~l~v~-~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 276 AVLFNPARNEAYVT-HRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp CEEEETTTTEEEEE-ETTTTEEEEEETTTTEE
T ss_pred eEEECCCCCEEEEE-ECCCCeEEEEECCCCeE
Confidence 69999999977765 45789999999988754
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=201.93 Aligned_cols=237 Identities=11% Similarity=0.098 Sum_probs=170.9
Q ss_pred CcceeEeecCC-CcEEEEEcCCeEEEEECCCC-----------CeEE---eEecCCCCCeEEEEEcCCCCeEE----EEE
Q 014934 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSS-----------KVTK---LCDLGIDDSVCSVGWANRNTHLA----VGT 227 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~-----------~~~~---~~~~~~~~~V~~v~~sp~g~~la----~g~ 227 (415)
...+++++|++ +.+|+++..+.|++|+...- .... ...+.+...|++++|+|+|++|| +|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 34689999999 77888886666999874311 1110 11124567899999999999999 678
Q ss_pred CCCcEEEEECCCC--------e---eeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCC
Q 014934 228 SHGKVQIWDASRC--------K---RVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSE 293 (415)
Q Consensus 228 ~dg~V~iwd~~~~--------~---~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 293 (415)
.|+.|+|||+.++ + .+..+.+|...|.+++|++ ++|++++.||+|++||+++.. ......+|...
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-~~~~~~~~~~~ 194 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV-KVCATLPSTVA 194 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE-EEEEEECGGGC
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc-ceeeccCCCCc
Confidence 8999999998654 2 2455678999999999984 589999999999999999885 45556678999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-------CCcEEEEEEcCCCCcEEEEEcCCCC------CeE
Q 014934 294 VCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH-------TAAVKAIAWSPHLHGLLASGGGTAD------RCI 360 (415)
Q Consensus 294 V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~llasggg~~d------~~I 360 (415)
|++++|+|+|++||+|+.||.|++||++ ++....+..| ...|.+++|++++..+++... .| ..+
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~--~dg~~~~~~~v 271 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAA--ADGTLETSPDV 271 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEE--TTCCSSSCCEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEcc--CCCccCCCCce
Confidence 9999999999999999999999999998 5555555443 338999999998765544443 23 249
Q ss_pred EEEECCCCc-----EEEEe-eC-----C--CCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 361 RFWNTTTNT-----HLSCM-DT-----G--SQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 361 ~iwd~~t~~-----~~~~~-~~-----~--~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
++|++...+ ....+ +. . .+-..+.+-++.+.+++++ ...+.|.|...
T Consensus 272 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s-~~s~dv~vl~~ 331 (434)
T 2oit_A 272 VMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAAS-AASTEVSILAR 331 (434)
T ss_dssp EEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEE-TTCSBCEEEEE
T ss_pred EEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEec-CCCCceeEEEe
Confidence 999998652 11221 11 1 1222344447777777753 44555666654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=200.45 Aligned_cols=237 Identities=15% Similarity=0.112 Sum_probs=182.8
Q ss_pred ceeEeecCC--CcEEEEEc-----CC----eEEEEEC--CCCCeEEe--EecCCCCCeEEEEEcC--------------C
Q 014934 169 YLNLVDWSS--HNVLAVGL-----GN----CVYLWNA--CSSKVTKL--CDLGIDDSVCSVGWAN--------------R 219 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~-----d~----~V~iwd~--~~~~~~~~--~~~~~~~~V~~v~~sp--------------~ 219 (415)
.++..+|++ ..++++|. +| .|+|||+ .+++.... +. +|...+..+++++ .
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 466778988 34665552 56 8999999 88886532 33 6666777777664 2
Q ss_pred CCeEEEEECC------CcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCC---cEEEEECCCCCccEEEec
Q 014934 220 NTHLAVGTSH------GKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDK---SILQRDIRAQEDFVSKLS 288 (415)
Q Consensus 220 g~~la~g~~d------g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~ 288 (415)
+..++.++.+ +.|++||+. +.....+.+|...|.+++|+ ++.|++++.++ .|++||+.+++ ...+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--~~~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVA 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--EEEee
Confidence 6667766654 799999997 45567778899999999999 47899998885 99999999876 34567
Q ss_pred cccCCeEEEEEeCCCCEEE-EEeCCCc--EEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCC--eEEEE
Q 014934 289 GHKSEVCGLKWSYDNRELA-SGGNDNR--LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR--CIRFW 363 (415)
Q Consensus 289 ~h~~~V~~l~~spdg~~la-sg~~dg~--I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~--~I~iw 363 (415)
.|...+.+++|+|||++|| +++.|+. |++||+.+++. ..+..|...+.+++|+|+|+.+++++. .++ .|.+|
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~--~~g~~~i~~~ 296 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSD--QAGRPQVYKV 296 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEEC--TTSSCEEEEE
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEEC--CCCCcEEEEE
Confidence 7888999999999999888 6666554 99999998865 567788899999999999986766654 344 78888
Q ss_pred ECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEec-CCCcEEEEECCCCc
Q 014934 364 NTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY-SQNQIIVWRYPTMS 412 (415)
Q Consensus 364 d~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~-~dg~I~vw~~~s~~ 412 (415)
|+.+++......++..+..++|+|+|++|+++... .+..|.+||+.+.+
T Consensus 297 d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 297 NINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp ETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred ECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 99988765444466788999999999999985321 13589999998764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-22 Score=183.41 Aligned_cols=227 Identities=13% Similarity=0.127 Sum_probs=174.3
Q ss_pred cceeEeecCC-CcEEEEEcCCeEEEEECCC-CCeEEeEecCCCCCeEEEEEcCCCCeEEEEE--CCCcEEEEEC--CCCe
Q 014934 168 FYLNLVDWSS-HNVLAVGLGNCVYLWNACS-SKVTKLCDLGIDDSVCSVGWANRNTHLAVGT--SHGKVQIWDA--SRCK 241 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~~d~~V~iwd~~~-~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~--~dg~V~iwd~--~~~~ 241 (415)
..+.+++|+| ++.|+++.++.|++||+.+ ++...+....+...+.+++|+|+|++|++++ .++.+.||.+ .+++
T Consensus 42 ~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~ 121 (297)
T 2ojh_A 42 ELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT 121 (297)
T ss_dssp SCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC
T ss_pred cceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc
Confidence 3578999999 8889998899999999999 8877666433357889999999999999998 3345555554 4444
Q ss_pred eeEEecCCCccEEEEEee--CCEEE-EEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe-CCCcEEE
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLS-SGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFV 317 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~-~dg~I~i 317 (415)
...+..+. .+..++|+ ++.|+ +++.++.+.+|+++........+..|...+.+++|+|++++|+.++ .++.+.|
T Consensus 122 -~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i 199 (297)
T 2ojh_A 122 -PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQI 199 (297)
T ss_dssp -CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred -eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccE
Confidence 44455443 48889998 35555 7889999999987544334567777888999999999999888766 5889999
Q ss_pred EECC-CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCC--------CCCeEEEEECCCCcEEEEe---eCCCCEEEEEE
Q 014934 318 WNQH-STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGT--------ADRCIRFWNTTTNTHLSCM---DTGSQVCNLVW 385 (415)
Q Consensus 318 wd~~-~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~--------~d~~I~iwd~~t~~~~~~~---~~~~~V~~l~~ 385 (415)
|++. .+..+..+..|...+..++|+|+++.+++.+... .++.|.+||+.+++..... .+...+..++|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 279 (297)
T 2ojh_A 200 WRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNW 279 (297)
T ss_dssp EEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCB
T ss_pred EEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceE
Confidence 9986 5566777888888999999999998666555310 1267999999988753332 45678899999
Q ss_pred CCCCCeEEEEE
Q 014934 386 SKNVNELVSTH 396 (415)
Q Consensus 386 s~~~~~l~s~~ 396 (415)
+|+++.|+++.
T Consensus 280 spdg~~l~~~~ 290 (297)
T 2ojh_A 280 SPDGDEFAYVR 290 (297)
T ss_dssp CTTSSEEEEEE
T ss_pred CCCCCEEEEEE
Confidence 99999998863
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-21 Score=183.61 Aligned_cols=237 Identities=14% Similarity=0.111 Sum_probs=172.0
Q ss_pred ceeEeecCC-CcEEEEE-cC-CeEEEEECC--CCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC-CCcEEEEEC---CC
Q 014934 169 YLNLVDWSS-HNVLAVG-LG-NCVYLWNAC--SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDA---SR 239 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d-~~V~iwd~~--~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~-dg~V~iwd~---~~ 239 (415)
.+..++|+| ++.|+++ .+ +.|.+|++. +++...+..+.....+.+++|+|+|++|++++. ++.|.+||+ .+
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 118 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP 118 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc
Confidence 466789999 6656665 44 899999987 666554443333348899999999998877765 888999999 44
Q ss_pred CeeeEEecCCCccEEEEEee--CCEEEEEe-CCCcEEEEECCCCCccEE----Eec-cccCCeEEEEEeCCCCEEEEEe-
Q 014934 240 CKRVRTMEGHRLRVGALAWS--SSLLSSGS-RDKSILQRDIRAQEDFVS----KLS-GHKSEVCGLKWSYDNRELASGG- 310 (415)
Q Consensus 240 ~~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~----~~~-~h~~~V~~l~~spdg~~lasg~- 310 (415)
.+.+..+..+ ..+.+++|+ ++.|++++ .++.|.+||+........ ... .....+.+++|+|++++|++++
T Consensus 119 ~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~ 197 (343)
T 1ri6_A 119 VGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE 197 (343)
T ss_dssp EEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred ccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC
Confidence 4555555544 458889998 45677776 899999999987332221 222 2345788999999999776554
Q ss_pred CCCcEEEEECCC--Cce--eEEecc---C---CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC--C--CcEEEEeeC
Q 014934 311 NDNRLFVWNQHS--TQP--VLKYCE---H---TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT--T--NTHLSCMDT 376 (415)
Q Consensus 311 ~dg~I~iwd~~~--~~~--~~~~~~---h---~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~--t--~~~~~~~~~ 376 (415)
.++.|.+||+.. ++. ...+.. . ...+.+++|+|+++.+++++. .++.|.+||+. + .+.+..+..
T Consensus 198 ~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~--~~~~i~v~d~~~~~~~~~~~~~~~~ 275 (343)
T 1ri6_A 198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR--TASLITVFSVSEDGSVLSKEGFQPT 275 (343)
T ss_dssp TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec--CCCEEEEEEEcCCCCceEEeeeecC
Confidence 889999999953 432 222221 1 235778999999998887775 68999999998 3 345555655
Q ss_pred CCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 377 ~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+..+..++|+|++++|+++ +..++.|.+|++.
T Consensus 276 ~~~~~~~~~s~dg~~l~~~-~~~~~~v~v~~~d 307 (343)
T 1ri6_A 276 ETQPRGFNVDHSGKYLIAA-GQKSHHISVYEIV 307 (343)
T ss_dssp SSSCCCEEECTTSSEEEEE-CTTTCEEEEEEEE
T ss_pred CCccceEEECCCCCEEEEe-cCCCCeEEEEEEc
Confidence 5568899999999988884 3468999999654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-21 Score=180.44 Aligned_cols=220 Identities=8% Similarity=0.065 Sum_probs=167.3
Q ss_pred cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC-CeeeEEecCC-CccEEEEEee--C
Q 014934 185 LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-CKRVRTMEGH-RLRVGALAWS--S 260 (415)
Q Consensus 185 ~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~-~~~~~~l~~h-~~~V~~l~~~--~ 260 (415)
.++.|++||..+++...+. .|...|.+++|+|+|++|++++ ++.|.+||+.+ ++.......+ ...+.+++|+ +
T Consensus 20 ~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCEEEEEEETTTTEEEEEE--EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred cceeEEEEeCCCCceeeec--cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 4678999999998877655 4678999999999999999986 78999999998 7776666555 4778899998 5
Q ss_pred CEEEEEe--CCCcEEEEEC--CCCCccEEEeccccCCeEEEEEeCCCCEEE-EEeCCCcEEEEECC-CCceeEEeccCCC
Q 014934 261 SLLSSGS--RDKSILQRDI--RAQEDFVSKLSGHKSEVCGLKWSYDNRELA-SGGNDNRLFVWNQH-STQPVLKYCEHTA 334 (415)
Q Consensus 261 ~~l~sgs--~dg~I~iwd~--~~~~~~~~~~~~h~~~V~~l~~spdg~~la-sg~~dg~I~iwd~~-~~~~~~~~~~h~~ 334 (415)
..|++++ .++.+.+|.+ .... ...+..+. .+..++|+|++++|+ +++.++.+.||++. .......+..|..
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGT--PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCC--CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred CEEEEEEeCCCCcceEEEEECCCCc--eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence 7888888 3345555544 4443 34444443 489999999999887 77889989999853 2234456677888
Q ss_pred cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC-CCcEEEEee-CCCCEEEEEECCCCCeEEEEEec---------CCCcE
Q 014934 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTT-TNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGY---------SQNQI 403 (415)
Q Consensus 335 ~V~~l~~sp~~~~llasggg~~d~~I~iwd~~-t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~---------~dg~I 403 (415)
.+.+++|+|+++.+++++. .++.+++|++. .+..+..+. +...+..+.|+|++++|+++... .++.|
T Consensus 174 ~~~~~~~s~dg~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l 251 (297)
T 2ojh_A 174 RNDGPDYSPDGRWIYFNSS--RTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV 251 (297)
T ss_dssp CEEEEEECTTSSEEEEEEC--TTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred ccccceECCCCCEEEEEec--CCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence 9999999999987777664 58889999875 444444443 45678899999999999885332 12579
Q ss_pred EEEECCCCc
Q 014934 404 IVWRYPTMS 412 (415)
Q Consensus 404 ~vw~~~s~~ 412 (415)
.+||+.+.+
T Consensus 252 ~~~d~~~~~ 260 (297)
T 2ojh_A 252 QLMDMDGGN 260 (297)
T ss_dssp EEEETTSCS
T ss_pred EEEecCCCC
Confidence 999998764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=179.28 Aligned_cols=229 Identities=9% Similarity=0.085 Sum_probs=177.5
Q ss_pred CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC-CCcEEEEECCCCee-eEEecCCCccEE
Q 014934 178 HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRCKR-VRTMEGHRLRVG 254 (415)
Q Consensus 178 ~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~-dg~V~iwd~~~~~~-~~~l~~h~~~V~ 254 (415)
+.+++++ .++.|++||..+++.......+ ...+ +++|+|+|+++++++. ++.|.+||+.+++. ...+..+.....
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 87 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMA 87 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCC
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCcc
Confidence 3444454 5789999999999998877643 4556 9999999997777666 88999999999887 777776766666
Q ss_pred EEEee--CCEEEEEeCCC---cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEE-EEeCCCc-EEEEECCCCceeE
Q 014934 255 ALAWS--SSLLSSGSRDK---SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELA-SGGNDNR-LFVWNQHSTQPVL 327 (415)
Q Consensus 255 ~l~~~--~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-sg~~dg~-I~iwd~~~~~~~~ 327 (415)
+++|+ +++|+++..++ .|.+||+.+++ .+..+.. .....+++|+|+|++|+ ++..++. |.+|++.....+.
T Consensus 88 ~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~-~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~ 165 (331)
T 3u4y_A 88 DVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK-FISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF 165 (331)
T ss_dssp CEEECTTSSEEEECCCSSSSCEEEEEETTTTE-EEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred ceEECCCCCEEEEecCCCCcccEEEEECCCCC-eEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence 68888 46777555553 89999998876 3444443 45679999999998555 4556688 9999987643331
Q ss_pred ----EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE---EEEeeCCCCEEEEEECCCCCeEEEEEecCC
Q 014934 328 ----KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH---LSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 328 ----~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~---~~~~~~~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
....+...+..++|+|+++.+++++. .++.|++||+.+++. +..+..+..+..++|+|+|++|+++ ...+
T Consensus 166 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~ 242 (331)
T 3u4y_A 166 DTGQEFISGGTRPFNITFTPDGNFAFVANL--IGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL-TEST 242 (331)
T ss_dssp EEEEEEECSSSSEEEEEECTTSSEEEEEET--TTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE-CSSE
T ss_pred ecCCccccCCCCccceEECCCCCEEEEEeC--CCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEE-EcCC
Confidence 22244566899999999998888876 689999999999998 8888888888999999999988775 3457
Q ss_pred CcEEEEECCCCcc
Q 014934 401 NQIIVWRYPTMSK 413 (415)
Q Consensus 401 g~I~vw~~~s~~~ 413 (415)
+.|.+||..+++.
T Consensus 243 ~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 243 VDVFNFNQLSGTL 255 (331)
T ss_dssp EEEEEEETTTTEE
T ss_pred CEEEEEECCCCce
Confidence 7899999987653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.2e-21 Score=193.89 Aligned_cols=239 Identities=12% Similarity=0.102 Sum_probs=189.5
Q ss_pred eeEeecCC-CcEEEEE-cCCeEEEEEC--CCCCeEEeEecCCCCCeEEEEEcC----CCCeEEEEEC-CCcEEEEECCCC
Q 014934 170 LNLVDWSS-HNVLAVG-LGNCVYLWNA--CSSKVTKLCDLGIDDSVCSVGWAN----RNTHLAVGTS-HGKVQIWDASRC 240 (415)
Q Consensus 170 i~~l~ws~-~~~la~~-~d~~V~iwd~--~~~~~~~~~~~~~~~~V~~v~~sp----~g~~la~g~~-dg~V~iwd~~~~ 240 (415)
+..++++| +++|+++ .++.|++||+ .++++...+. +...+.+++|+| +|++|++++. +++|.+||..++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~ 258 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 258 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence 77899999 6666665 6799999999 7887776665 456789999999 9999999885 899999999999
Q ss_pred eeeEEecCC----------C-ccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEE
Q 014934 241 KRVRTMEGH----------R-LRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306 (415)
Q Consensus 241 ~~~~~l~~h----------~-~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 306 (415)
+++..+..+ . ..+.++.+++ .++++...++.|.+||.............+...+.++.|+|+|++|
T Consensus 259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l 338 (543)
T 1nir_A 259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYF 338 (543)
T ss_dssp CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEE
T ss_pred ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEE
Confidence 988887642 2 3788999983 4777888899999999987653332222456678899999999987
Q ss_pred EEEe-CCCcEEEEECCCCceeEEecc----CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC-------CcEEEEe
Q 014934 307 ASGG-NDNRLFVWNQHSTQPVLKYCE----HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-------NTHLSCM 374 (415)
Q Consensus 307 asg~-~dg~I~iwd~~~~~~~~~~~~----h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t-------~~~~~~~ 374 (415)
++++ .+++|.+||+.+++.+..+.. |.+....+ ++|++..+++++. ..|++|.+||+.+ +++++.+
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~-~~d~~V~v~d~~~~~~~~~~~~~v~~l 416 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH-LGDGSISLIGTDPKNHPQYAWKKVAEL 416 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEecc-CCCceEEEEEeCCCCCchhcCeEEEEE
Confidence 6654 589999999999998888764 65444433 5787566888873 1479999999998 8899999
Q ss_pred eC-CCCEEEEEECCCCCeEEEEEec-------CCCcEEEEECCCCccc
Q 014934 375 DT-GSQVCNLVWSKNVNELVSTHGY-------SQNQIIVWRYPTMSKV 414 (415)
Q Consensus 375 ~~-~~~V~~l~~s~~~~~l~s~~g~-------~dg~I~vw~~~s~~~l 414 (415)
.. +..+..+.++|++++|++ +. .++.|.|||+.+++.+
T Consensus 417 ~~~g~~~~~v~~~pdg~~l~v--~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 417 QGQGGGSLFIKTHPKSSHLYV--DTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp ECSCSCCCCEECCTTCCEEEE--CCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred EcCCCCceEEEcCCCCCcEEE--ecCCCCCcccCceEEEEECCCCCCC
Confidence 84 467788999999999999 43 1679999999988753
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-20 Score=175.00 Aligned_cols=223 Identities=10% Similarity=0.067 Sum_probs=181.1
Q ss_pred eeEeecCC-CcEE-EEEc-CCeEEEEECCCCCeEEeEecCCCC--------CeEEEEEcCCCCeEEEEE--CCCcEEEEE
Q 014934 170 LNLVDWSS-HNVL-AVGL-GNCVYLWNACSSKVTKLCDLGIDD--------SVCSVGWANRNTHLAVGT--SHGKVQIWD 236 (415)
Q Consensus 170 i~~l~ws~-~~~l-a~~~-d~~V~iwd~~~~~~~~~~~~~~~~--------~V~~v~~sp~g~~la~g~--~dg~V~iwd 236 (415)
...+.|++ ++.+ +++. ++.|++||..+++....+..+... .+.+++|+|+|++++++. .++.|.+||
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 45678888 5544 4443 589999999999988877654322 278999999999888876 478899999
Q ss_pred CCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec----cccCCeEEEEEeCCCCEEEEEe
Q 014934 237 ASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS----GHKSEVCGLKWSYDNRELASGG 310 (415)
Q Consensus 237 ~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~h~~~V~~l~~spdg~~lasg~ 310 (415)
..+++.+..+..+...+.+++|+ ++.|++++.++.|.+||+.++. ....+. ++...+.+++|+|++++|++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 171 GGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK-ILSRKKLLDDGKEHFFINISLDTARQRAFITD 249 (353)
T ss_dssp TTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE-EEEEEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe-EEEEEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence 99999988887666668888897 5789999999999999999876 344443 2456788999999999877666
Q ss_pred C-CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCC
Q 014934 311 N-DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNV 389 (415)
Q Consensus 311 ~-dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~ 389 (415)
. ++.|.+||+.+++.+..+..... ..++|+|+++.++++.. .++.|.+||+.+++.+..+..+..+.+++|+++|
T Consensus 250 ~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 325 (353)
T 3vgz_A 250 SKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHR--QAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADG 325 (353)
T ss_dssp SSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEET--TTTEEEEEETTTTEEEEEEECCSEEEEEEECTTS
T ss_pred CCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEEC--CCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCC
Confidence 4 58999999999998887765432 57999999998888876 6899999999999999999888889999999999
Q ss_pred CeEEEEEe
Q 014934 390 NELVSTHG 397 (415)
Q Consensus 390 ~~l~s~~g 397 (415)
+.|+++..
T Consensus 326 ~~l~v~~~ 333 (353)
T 3vgz_A 326 KTLYVSVK 333 (353)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEc
Confidence 98877643
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-20 Score=175.08 Aligned_cols=234 Identities=9% Similarity=0.018 Sum_probs=174.6
Q ss_pred EeecCC-CcEE-EEEc-CCeEEEEECCCCCe-EEeEecCCCCCeEEEEEcCCCCeEEEEECCC---cEEEEECCCCeeeE
Q 014934 172 LVDWSS-HNVL-AVGL-GNCVYLWNACSSKV-TKLCDLGIDDSVCSVGWANRNTHLAVGTSHG---KVQIWDASRCKRVR 244 (415)
Q Consensus 172 ~l~ws~-~~~l-a~~~-d~~V~iwd~~~~~~-~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg---~V~iwd~~~~~~~~ 244 (415)
.++|+| ++.| +++. ++.|++||..+++. ..... .+.....+++|+|+|++|+++..++ .|.+||+.+++.+.
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~ 122 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS 122 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc-cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE
Confidence 789999 5544 4444 67999999999987 55554 3344444499999999999655553 89999999999888
Q ss_pred EecCCCccEEEEEeeC--C-EEEEEeCCCc-EEEEECCCCCccE---EEeccccCCeEEEEEeCCCCEEEE-EeCCCcEE
Q 014934 245 TMEGHRLRVGALAWSS--S-LLSSGSRDKS-ILQRDIRAQEDFV---SKLSGHKSEVCGLKWSYDNRELAS-GGNDNRLF 316 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~--~-~l~sgs~dg~-I~iwd~~~~~~~~---~~~~~h~~~V~~l~~spdg~~las-g~~dg~I~ 316 (415)
.+..+ ....+++|++ + +++++..++. |.+|++....... .........+.+++|+|+|++|++ +..++.|.
T Consensus 123 ~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 201 (331)
T 3u4y_A 123 TIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIG 201 (331)
T ss_dssp EEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEE
Confidence 77744 4568999984 3 5555566688 9999998654221 112234456899999999996655 45689999
Q ss_pred EEECCCCce---eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE--EEEeeCC--------CCEEEE
Q 014934 317 VWNQHSTQP---VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH--LSCMDTG--------SQVCNL 383 (415)
Q Consensus 317 iwd~~~~~~---~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~--~~~~~~~--------~~V~~l 383 (415)
+||+.+++. +..+.. ...+..++|+|+++.++++.. .++.|.+||+.+++. +..+... ..+..+
T Consensus 202 v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (331)
T 3u4y_A 202 ILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTE--STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQM 278 (331)
T ss_dssp EEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECS--SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCE
T ss_pred EEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEc--CCCEEEEEECCCCceeeecccccccccCCCCcccccce
Confidence 999999888 777754 467789999999997777765 588899999999887 4443322 123558
Q ss_pred EECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 384 VWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 384 ~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+|+|++++|+++ +..++.|.+|++...
T Consensus 279 ~~spdg~~l~v~-~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 279 ALNKTETKLFIS-ANISRELKVFTISGK 305 (331)
T ss_dssp EECTTSSEEEEE-ETTTTEEEEEETTSC
T ss_pred EECCCCCEEEEe-cCCCCcEEEEEecCC
Confidence 999999998775 456789999999764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-20 Score=176.16 Aligned_cols=222 Identities=11% Similarity=0.036 Sum_probs=172.6
Q ss_pred EEEEcCCeEEEEECCCCCeEEeEecCCCC-CeEEEEEcCCCCeEEEE-ECCCcEEEEECCCCeeeEEecCC-----CccE
Q 014934 181 LAVGLGNCVYLWNACSSKVTKLCDLGIDD-SVCSVGWANRNTHLAVG-TSHGKVQIWDASRCKRVRTMEGH-----RLRV 253 (415)
Q Consensus 181 la~~~d~~V~iwd~~~~~~~~~~~~~~~~-~V~~v~~sp~g~~la~g-~~dg~V~iwd~~~~~~~~~l~~h-----~~~V 253 (415)
++.+.++.|++||..+++....+..++.. .+.+++|+|+|++++++ ..++.|.+||+.+++.+..+... ...+
T Consensus 5 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 84 (337)
T 1pby_B 5 LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSL 84 (337)
T ss_dssp EEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECT
T ss_pred EEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccc
Confidence 34446899999999999888777654432 48899999999876554 55789999999999887766531 1256
Q ss_pred EEEEee--CCEEEEEe------------CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 014934 254 GALAWS--SSLLSSGS------------RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319 (415)
Q Consensus 254 ~~l~~~--~~~l~sgs------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd 319 (415)
.+++|+ ++.|++++ .++.|.+||+.+.. ....+.. ...+.+++|+|+|++|+++ ++.|++||
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d 160 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMD 160 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEE
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc-EEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEE
Confidence 678888 46787776 67999999998765 3444443 4568889999999988888 68899999
Q ss_pred CCCCceeEEeccCC------------------------------------------------------------------
Q 014934 320 QHSTQPVLKYCEHT------------------------------------------------------------------ 333 (415)
Q Consensus 320 ~~~~~~~~~~~~h~------------------------------------------------------------------ 333 (415)
+.+++.+..+..+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 240 (337)
T 1pby_B 161 PEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240 (337)
T ss_dssp TTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS
T ss_pred CCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCC
Confidence 98876654443221
Q ss_pred CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 334 AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 334 ~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
..+.+++|+|+++.++++ ++.|.+||+.+++.+..+..+..+.+++|+|+|++|++ +..++.|.+||+.+++.
T Consensus 241 ~~~~~~~~s~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~--~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 241 VFYFSTAVNPAKTRAFGA-----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWL--GGALGDLAAYDAETLEK 313 (337)
T ss_dssp SCEEEEEECTTSSEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEE--ESBSSEEEEEETTTCCE
T ss_pred CceeeEEECCCCCEEEEe-----CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEE--EcCCCcEEEEECcCCcE
Confidence 234568999999866653 58999999999999988887788899999999999988 45689999999988764
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-20 Score=175.94 Aligned_cols=230 Identities=13% Similarity=0.078 Sum_probs=173.6
Q ss_pred eecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCCcEEEEECCCCeeeEEecCC
Q 014934 173 VDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 173 l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg~V~iwd~~~~~~~~~l~~h 249 (415)
+++++ +.+++++ .++.|++||..+++....+..+....+..++|+|+|++++++ ..++.|.+||+.+++.+..+..+
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 34556 4555554 678999999999988877765433368899999999866554 46889999999999888776532
Q ss_pred C------ccEEEEEee--CCEEEEEeCC------------CcEEEEECCCCCc--cEEEeccccCCeEEEEEeCCCCEEE
Q 014934 250 R------LRVGALAWS--SSLLSSGSRD------------KSILQRDIRAQED--FVSKLSGHKSEVCGLKWSYDNRELA 307 (415)
Q Consensus 250 ~------~~V~~l~~~--~~~l~sgs~d------------g~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~spdg~~la 307 (415)
. ..+.+++|+ +++|++++.+ +.|.+||+.++.. .+.... +...+.+++|+|+|+ ++
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EE
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EE
Confidence 2 236778887 4688888765 8999999987431 123333 334688999999999 55
Q ss_pred EEeCCCcEEEEECCCCceeEEeccCC------------------------------------------------------
Q 014934 308 SGGNDNRLFVWNQHSTQPVLKYCEHT------------------------------------------------------ 333 (415)
Q Consensus 308 sg~~dg~I~iwd~~~~~~~~~~~~h~------------------------------------------------------ 333 (415)
+++. .|++||+.+++.+..+..+.
T Consensus 163 ~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 240 (349)
T 1jmx_B 163 VAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 240 (349)
T ss_dssp EESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred EccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec
Confidence 5544 49999999888776654321
Q ss_pred --------------CcEEEEEEcC-CCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEec
Q 014934 334 --------------AAVKAIAWSP-HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 334 --------------~~V~~l~~sp-~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
..+..++|+| +++.++++ ++.|.+||+.+++.+..+..+..+.+++|+++++.|++ +.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~--~~ 313 (349)
T 1jmx_B 241 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYL--GG 313 (349)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEE--ES
T ss_pred cCCcEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEE--ec
Confidence 1345677889 88855553 67999999999999888887777889999999999988 45
Q ss_pred CCCcEEEEECCCCcc
Q 014934 399 SQNQIIVWRYPTMSK 413 (415)
Q Consensus 399 ~dg~I~vw~~~s~~~ 413 (415)
.++.|.+||..+++.
T Consensus 314 ~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 314 TFNDLAVFNPDTLEK 328 (349)
T ss_dssp BSSEEEEEETTTTEE
T ss_pred CCCeEEEEeccccce
Confidence 679999999988764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=185.48 Aligned_cols=228 Identities=12% Similarity=0.106 Sum_probs=177.6
Q ss_pred cCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC--CCCeeeEEecCCC
Q 014934 175 WSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA--SRCKRVRTMEGHR 250 (415)
Q Consensus 175 ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~--~~~~~~~~l~~h~ 250 (415)
++| +.+++++ .++.|.+||..++++...+..++. +.+++|+|+|++|++++.++.|.+||+ .+++.+..+. +.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 556 4455555 468999999999999888875543 899999999999999999999999999 8888888888 44
Q ss_pred ccEEEEEeeC------CEEEEEe-CCCcEEEEECCCCCccEEEecc----------cc-CCeEEEEEeCCCCE-EEEEeC
Q 014934 251 LRVGALAWSS------SLLSSGS-RDKSILQRDIRAQEDFVSKLSG----------HK-SEVCGLKWSYDNRE-LASGGN 311 (415)
Q Consensus 251 ~~V~~l~~~~------~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~----------h~-~~V~~l~~spdg~~-lasg~~ 311 (415)
..+..++|++ ++|++++ .+++|.+||..+.+ ++..+.. |. ..+.++.++|++.. +++...
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 5678999975 5777777 58999999998876 4555543 22 36899999997765 556778
Q ss_pred CCcEEEEECCCCceeE--EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC-----CCEEEEE
Q 014934 312 DNRLFVWNQHSTQPVL--KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-----SQVCNLV 384 (415)
Q Consensus 312 dg~I~iwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-----~~V~~l~ 384 (415)
++.|.+||..+.+.+. .+ .+...+..++|+|+++++++++. .++.|.+||+.+++++..+..+ .....+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~--~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred CCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEec--CCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 8999999998876544 44 46667889999999998888876 6899999999999999888732 223333
Q ss_pred ECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 385 WSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 385 ~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
++|++..++++....|++|.||++.+
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCCCccEEEeccCCCceEEEEEeCC
Confidence 46774444443223689999999987
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=204.03 Aligned_cols=234 Identities=14% Similarity=0.129 Sum_probs=175.9
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCC---CeEEEEEcCCCCeEEEEECC---------CcEEEEE
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDD---SVCSVGWANRNTHLAVGTSH---------GKVQIWD 236 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~---~V~~v~~sp~g~~la~g~~d---------g~V~iwd 236 (415)
...++|+| +.+++++.++.|++||..+++...++. .+.. .|.+++|+|||++||+++.+ +.|.+||
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~-~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEEC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEec-cccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 45778999 677777778999999999998877765 4433 49999999999999999874 7788999
Q ss_pred CCCCeeeEEec---CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCe-----------------
Q 014934 237 ASRCKRVRTME---GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV----------------- 294 (415)
Q Consensus 237 ~~~~~~~~~l~---~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V----------------- 294 (415)
+.+++. ..+. +|...+..++|+ ++.|+.++. +.|++||+.++. .......+...+
T Consensus 98 ~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 98 IPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-AIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp SSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-CEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred CCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-eEEEecCCCCCceECcccceeEEEEeccC
Confidence 998875 3333 455568889998 468888876 789999998876 344444433333
Q ss_pred -EEEEEeCCCCEEEEEeCCC----------------------------------cEEEEECCCCceeEEeccC------C
Q 014934 295 -CGLKWSYDNRELASGGNDN----------------------------------RLFVWNQHSTQPVLKYCEH------T 333 (415)
Q Consensus 295 -~~l~~spdg~~lasg~~dg----------------------------------~I~iwd~~~~~~~~~~~~h------~ 333 (415)
.+++|+|||++||+++.|+ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 7899999999999987553 7999999988866666654 6
Q ss_pred CcEEEEEEcCCCCcEEEEEc-CCCCCeEEEEECCCCcEEEEee--CCCCE----EEEEECCCCCeEEEEEecCCC-----
Q 014934 334 AAVKAIAWSPHLHGLLASGG-GTADRCIRFWNTTTNTHLSCMD--TGSQV----CNLVWSKNVNELVSTHGYSQN----- 401 (415)
Q Consensus 334 ~~V~~l~~sp~~~~llasgg-g~~d~~I~iwd~~t~~~~~~~~--~~~~V----~~l~~s~~~~~l~s~~g~~dg----- 401 (415)
..+..++|+|+|+.+++... +..+..|++||+.++++...+. +...+ ..+.|+|+|+.|+...+..++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 334 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF 334 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcce
Confidence 67899999999984434332 1235789999999998766543 22333 378999999988875344566
Q ss_pred -cEEEEE
Q 014934 402 -QIIVWR 407 (415)
Q Consensus 402 -~I~vw~ 407 (415)
.|.+|+
T Consensus 335 ~~l~~~d 341 (723)
T 1xfd_A 335 YHITVSS 341 (723)
T ss_dssp EEEEEEC
T ss_pred eEEEEEe
Confidence 566777
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-21 Score=200.58 Aligned_cols=235 Identities=13% Similarity=0.097 Sum_probs=180.1
Q ss_pred ceeEeecCC-CcEEEEEc--CC-----eEEEEECCCCCeEEeEecCC-C----------------------CCeEEEEEc
Q 014934 169 YLNLVDWSS-HNVLAVGL--GN-----CVYLWNACSSKVTKLCDLGI-D----------------------DSVCSVGWA 217 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~--d~-----~V~iwd~~~~~~~~~~~~~~-~----------------------~~V~~v~~s 217 (415)
.+..++|+| ++.|+++. ++ .|++||+.+++...+..... . ..|.+++|+
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 478999999 77777764 56 89999999998877775321 1 237899999
Q ss_pred CCCCeEEEEECCCcEEEEECCCCe--eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCC
Q 014934 218 NRNTHLAVGTSHGKVQIWDASRCK--RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSE 293 (415)
Q Consensus 218 p~g~~la~g~~dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 293 (415)
|||++|++++. +.|.+||+.++. .+..+..|...+.+++|+ ++.|+.++ ++.|++||+.++. .......+...
T Consensus 118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~-~~~~~~~~~~~ 194 (741)
T 2ecf_A 118 PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR-QMQLTADGSTT 194 (741)
T ss_dssp TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE-EEECCCCCCSS
T ss_pred CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC-EEEeccCCccc
Confidence 99999999886 899999998873 445677788889999999 46788877 4689999998765 23333333322
Q ss_pred ----------------eEEEEEeCCCCEEEEEeCCC---------------------------------cEEEEECCC-C
Q 014934 294 ----------------VCGLKWSYDNRELASGGNDN---------------------------------RLFVWNQHS-T 323 (415)
Q Consensus 294 ----------------V~~l~~spdg~~lasg~~dg---------------------------------~I~iwd~~~-~ 323 (415)
+.+++|+|||++|++++.|+ .|++||+.+ +
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 47899999999999987765 899999988 7
Q ss_pred ceeEEec--cCCCcEEEEEEcCCCCcEEEEEc--CCCCCeEEEEECCCCcEEEEeeCCC-----CEEEEEECCCCCeEEE
Q 014934 324 QPVLKYC--EHTAAVKAIAWSPHLHGLLASGG--GTADRCIRFWNTTTNTHLSCMDTGS-----QVCNLVWSKNVNELVS 394 (415)
Q Consensus 324 ~~~~~~~--~h~~~V~~l~~sp~~~~llasgg--g~~d~~I~iwd~~t~~~~~~~~~~~-----~V~~l~~s~~~~~l~s 394 (415)
+...... .|...+..++| |+|+.|++++. +..+..|++||+.+++....+.... .+..+.|+|+|+.+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~ 353 (741)
T 2ecf_A 275 QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWS 353 (741)
T ss_dssp CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEE
T ss_pred ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEE
Confidence 7654432 47788999999 99997766542 2246789999999998776664322 3468999999997666
Q ss_pred EEecCCCcEEEEECC
Q 014934 395 THGYSQNQIIVWRYP 409 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~ 409 (415)
+..+|.+.||.+.
T Consensus 354 --~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 354 --SERTGFQHLYRID 366 (741)
T ss_dssp --ECTTSSCEEEEEC
T ss_pred --ecCCCccEEEEEc
Confidence 5678888888765
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-20 Score=195.36 Aligned_cols=240 Identities=13% Similarity=0.106 Sum_probs=184.1
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCC-----CCeEEeEecCCCC-------------CeEEEEEcCCCCeEEEEE---
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACS-----SKVTKLCDLGIDD-------------SVCSVGWANRNTHLAVGT--- 227 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~-----~~~~~~~~~~~~~-------------~V~~v~~sp~g~~la~g~--- 227 (415)
+..++||| ++.|+++.++.|++|++.+ ++...+...++.. .+.++.|+|||++|++++
T Consensus 123 ~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~ 202 (706)
T 2z3z_A 123 TASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQ 202 (706)
T ss_dssp CTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEEC
T ss_pred ccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECC
Confidence 56789999 7888888899999999998 8776655422221 148999999999999987
Q ss_pred ------------------------------CCCcEEEEECCCCeeeEEec--CCCccEEEEEee--CCEEEEEeCCC---
Q 014934 228 ------------------------------SHGKVQIWDASRCKRVRTME--GHRLRVGALAWS--SSLLSSGSRDK--- 270 (415)
Q Consensus 228 ------------------------------~dg~V~iwd~~~~~~~~~l~--~h~~~V~~l~~~--~~~l~sgs~dg--- 270 (415)
.++.|.+||+.+++...... .|...+.+++|+ ++.|++++.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 282 (706)
T 2z3z_A 203 SMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQN 282 (706)
T ss_dssp TTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSC
T ss_pred CCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCC
Confidence 44679999999887654442 467789999998 46788877775
Q ss_pred --cEEEEECCCCCccEEEec-cccC---CeEEEEEeC--CCCEEEEEeCCCcEEEEECC-CCceeEEeccCCCcEEE-EE
Q 014934 271 --SILQRDIRAQEDFVSKLS-GHKS---EVCGLKWSY--DNRELASGGNDNRLFVWNQH-STQPVLKYCEHTAAVKA-IA 340 (415)
Q Consensus 271 --~I~iwd~~~~~~~~~~~~-~h~~---~V~~l~~sp--dg~~lasg~~dg~I~iwd~~-~~~~~~~~~~h~~~V~~-l~ 340 (415)
.|++||+.++........ .+.. .+.+++|+| ||++|++++.|+.+.||++. ++..+..+..|...+.. ++
T Consensus 283 ~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~ 362 (706)
T 2z3z_A 283 ECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAG 362 (706)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEE
T ss_pred eeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeE
Confidence 899999998732222222 2222 246789999 99999999999999999876 66777788888888877 79
Q ss_pred EcCCCCcEEEEEcCCCCC----eEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCC--CcEEEEECCCCc
Q 014934 341 WSPHLHGLLASGGGTADR----CIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ--NQIIVWRYPTMS 412 (415)
Q Consensus 341 ~sp~~~~llasggg~~d~----~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~d--g~I~vw~~~s~~ 412 (415)
|+|+++.+++++. .++ .|..||+.+++ +..+.+...+..++|+|+|++|+.+....+ +.|.+||..+.+
T Consensus 363 ~spdg~~l~~~~~--~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 363 FDPKGTRLYFEST--EASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ECTTSSEEEEEES--SSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EcCCCCEEEEEec--CCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 9999997877775 444 78888888876 455556777999999999999988533222 579999987754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-20 Score=174.67 Aligned_cols=220 Identities=12% Similarity=0.141 Sum_probs=161.8
Q ss_pred cCCeEEEEECC-CCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC-CcEEEEECC--CCe--eeEEecCCCccEEEEEe
Q 014934 185 LGNCVYLWNAC-SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-GKVQIWDAS--RCK--RVRTMEGHRLRVGALAW 258 (415)
Q Consensus 185 ~d~~V~iwd~~-~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d-g~V~iwd~~--~~~--~~~~l~~h~~~V~~l~~ 258 (415)
.++.|++|++. +++........+...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+..+. .+..++|
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 91 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIST 91 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEE
T ss_pred CCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEE
Confidence 57999999985 4444434334567789999999999999998886 999999997 444 444555443 7888999
Q ss_pred e--CCEEEEEe-CCCcEEEEECCCCC--ccEEEeccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCC-CceeE----
Q 014934 259 S--SSLLSSGS-RDKSILQRDIRAQE--DFVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHS-TQPVL---- 327 (415)
Q Consensus 259 ~--~~~l~sgs-~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spdg~~lasg~-~dg~I~iwd~~~-~~~~~---- 327 (415)
+ +++|++++ .++.|.+||+..+. .....+.. ...+.+++|+|++++|++++ .++.|.+||+.+ ++...
T Consensus 92 s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 170 (343)
T 1ri6_A 92 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA 170 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred cCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc
Confidence 8 45665555 58899999995221 12333333 34688999999999888877 899999999987 54432
Q ss_pred Eecc-CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC--CcE--EEEee---C----CCCEEEEEECCCCCeEEEE
Q 014934 328 KYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT--NTH--LSCMD---T----GSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 328 ~~~~-h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t--~~~--~~~~~---~----~~~V~~l~~s~~~~~l~s~ 395 (415)
.+.. ....+..++|+|+++.+++++. .++.|.+|++.. ++. +..+. . ...+..++|+|++++|+++
T Consensus 171 ~~~~~~~~~~~~~~~~pdg~~l~~~~~--~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~ 248 (343)
T 1ri6_A 171 EVTTVEGAGPRHMVFHPNEQYAYCVNE--LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC 248 (343)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE
T ss_pred ccccCCCCCcceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEE
Confidence 2222 3457889999999997878775 689999999953 443 22332 1 2357789999999988865
Q ss_pred EecCCCcEEEEECC
Q 014934 396 HGYSQNQIIVWRYP 409 (415)
Q Consensus 396 ~g~~dg~I~vw~~~ 409 (415)
+..++.|.+|++.
T Consensus 249 -~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 249 -DRTASLITVFSVS 261 (343)
T ss_dssp -ETTTTEEEEEEEC
T ss_pred -ecCCCEEEEEEEc
Confidence 4578999999997
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-21 Score=189.03 Aligned_cols=212 Identities=17% Similarity=0.211 Sum_probs=161.9
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC----------eeeEE-----ecCCC
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC----------KRVRT-----MEGHR 250 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~----------~~~~~-----l~~h~ 250 (415)
.+.|++|+... . .....+..+++++++.++++|+.+| |++|+.... ..+.. ...+.
T Consensus 22 ~~~vri~~~~~-~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (434)
T 2oit_A 22 LKKVRIFDSPE-E-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMK 92 (434)
T ss_dssp CCEEECSCCCS-S-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCS
T ss_pred eeeEEecCCcc-c-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCC
Confidence 36788886531 1 1235689999999999999999988 899875311 01111 11356
Q ss_pred ccEEEEEee--CCEEE----EEeCCCcEEEEECCCC-----Cc-----cEEEeccccCCeEEEEEeCC-CCEEEEEeCCC
Q 014934 251 LRVGALAWS--SSLLS----SGSRDKSILQRDIRAQ-----ED-----FVSKLSGHKSEVCGLKWSYD-NRELASGGNDN 313 (415)
Q Consensus 251 ~~V~~l~~~--~~~l~----sgs~dg~I~iwd~~~~-----~~-----~~~~~~~h~~~V~~l~~spd-g~~lasg~~dg 313 (415)
..|.+++|+ +++|+ +|+.|+.|++||+++. .. ....+.+|...|.+++|+|+ +.+||+|+.||
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence 789999999 57888 7889999999998754 11 14556689999999999997 89999999999
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC--------CCCEEEEEE
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--------GSQVCNLVW 385 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~--------~~~V~~l~~ 385 (415)
.|++||++++..+....+|...|.+++|+|+|. .|++|+ .|+.|++||++ ++....+.. ...|.++.|
T Consensus 173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~-~lasgs--~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w 248 (434)
T 2oit_A 173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGK-QLAVGK--QNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLW 248 (434)
T ss_dssp CEEEEEESSSEEEEEEECGGGCEEEEEECTTSS-CEEEEE--TTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEE
T ss_pred eEEEEEcCCCcceeeccCCCCceeEEEEcCCCC-EEEEEc--CCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEE
Confidence 999999999877777778999999999999987 555665 79999999998 665555531 127899999
Q ss_pred CCCCCeEEEEEecCCC------cEEEEECCCC
Q 014934 386 SKNVNELVSTHGYSQN------QIIVWRYPTM 411 (415)
Q Consensus 386 s~~~~~l~s~~g~~dg------~I~vw~~~s~ 411 (415)
++++.++++.. ..+| .+++|+++..
T Consensus 249 ~~~~~~l~~~~-~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 249 IGTYVFAIVYA-AADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EETTEEEEEEE-ETTCCSSSCCEEEEEECCCT
T ss_pred ecCceEEEEEc-cCCCccCCCCceEEEEeccC
Confidence 99988876653 3343 3899999864
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-19 Score=171.30 Aligned_cols=237 Identities=11% Similarity=0.056 Sum_probs=167.7
Q ss_pred eeEeecCC-CcEEEEEc---CCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCC---C
Q 014934 170 LNLVDWSS-HNVLAVGL---GNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASR---C 240 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~---d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~---~ 240 (415)
...++|+| +++++++. ++.|++|++.+++...+..+ .+...+..++|+|+|++|++++ .++.|.+|++.. .
T Consensus 42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred cceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 45688999 55555554 47899999987765444331 3467789999999999998888 678999999963 2
Q ss_pred eeeEEecC---------CCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccE--EEecc-ccCCeEEEEEeCCCCEE
Q 014934 241 KRVRTMEG---------HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFV--SKLSG-HKSEVCGLKWSYDNREL 306 (415)
Q Consensus 241 ~~~~~l~~---------h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~-h~~~V~~l~~spdg~~l 306 (415)
+.+..+.. +...+.+++|+ ++++++...++.|.+||+....... ..+.. ....+..++|+|||++|
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l 201 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA 201 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE
Confidence 33333321 12348889998 4666666678899999998332222 11222 23467889999999966
Q ss_pred EE-EeCCCcEEEEECCC--Cce--eEEeccCC------CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC-C--cEEE
Q 014934 307 AS-GGNDNRLFVWNQHS--TQP--VLKYCEHT------AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-N--THLS 372 (415)
Q Consensus 307 as-g~~dg~I~iwd~~~--~~~--~~~~~~h~------~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t-~--~~~~ 372 (415)
++ +..++.|.+|++.. ++. +..+.... ..+..++|+|+|++++++.. .++.|.+|++.. + +.+.
T Consensus 202 ~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~--~~~~v~v~~~~~~g~~~~~~ 279 (347)
T 3hfq_A 202 FLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR--GYNTLAVFAVTADGHLTLIQ 279 (347)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE--TTTEEEEEEECGGGCEEEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC--CCCEEEEEEECCCCcEEEeE
Confidence 65 56788999999874 432 23333222 45889999999998877775 689999999973 2 4455
Q ss_pred EeeC-CCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 373 CMDT-GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 373 ~~~~-~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.+.. +..+..++|+|+|++|+++ +..++.|.+|++.
T Consensus 280 ~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~v~v~~~d 316 (347)
T 3hfq_A 280 QISTEGDFPRDFDLDPTEAFVVVV-NQNTDNATLYARD 316 (347)
T ss_dssp EEECSSSCCCEEEECTTSSEEEEE-ETTTTEEEEEEEC
T ss_pred EEecCCCCcCeEEECCCCCEEEEE-EcCCCcEEEEEEe
Confidence 5544 5668899999999998885 4456899999553
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=191.10 Aligned_cols=236 Identities=11% Similarity=0.081 Sum_probs=177.1
Q ss_pred cceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC-----Cee
Q 014934 168 FYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-----CKR 242 (415)
Q Consensus 168 ~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~-----~~~ 242 (415)
..+..++|+|+..++++.++.|++||+.+++...+. .+...+.+++|+|||++||++ .++.|.+||+.+ ++.
T Consensus 82 ~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp CCCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred cCceeEEECCCCeEEEEECCEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence 458899999987777778899999999998876655 456778999999999999985 679999999988 776
Q ss_pred eEEecCCCcc--------------EEEEEee--CCEEEEEe---------------------------------CCCcEE
Q 014934 243 VRTMEGHRLR--------------VGALAWS--SSLLSSGS---------------------------------RDKSIL 273 (415)
Q Consensus 243 ~~~l~~h~~~--------------V~~l~~~--~~~l~sgs---------------------------------~dg~I~ 273 (415)
......+... +.+++|+ ++.|++++ .+..|+
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 6544444443 4789998 57888887 446799
Q ss_pred EEECCCCCccEEEe--ccccCCeEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCceeEEec--cCCC---cEEEEEE
Q 014934 274 QRDIRAQEDFVSKL--SGHKSEVCGLKWSYDNRELASGGNDN-----RLFVWNQHSTQPVLKYC--EHTA---AVKAIAW 341 (415)
Q Consensus 274 iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~lasg~~dg-----~I~iwd~~~~~~~~~~~--~h~~---~V~~l~~ 341 (415)
+||+.++.. .... ..|...+.+++|+|||++|++++.++ .|++||+.+++....+. .+.. .+..++|
T Consensus 239 ~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T 2z3z_A 239 IYHLATGKT-VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF 317 (706)
T ss_dssp EEETTTTEE-EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred EEECCCCce-EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence 999987762 2222 24667799999999999999987765 89999999984333332 2222 2467899
Q ss_pred cC--CCCcEEEEEcCCCCCeEEEEECC-CCcEEEEee-CCCCEEE-EEECCCCCeEEEEEecCCC----cEEEEECCCC
Q 014934 342 SP--HLHGLLASGGGTADRCIRFWNTT-TNTHLSCMD-TGSQVCN-LVWSKNVNELVSTHGYSQN----QIIVWRYPTM 411 (415)
Q Consensus 342 sp--~~~~llasggg~~d~~I~iwd~~-t~~~~~~~~-~~~~V~~-l~~s~~~~~l~s~~g~~dg----~I~vw~~~s~ 411 (415)
+| +|+ ++++++ .|+.+++|.+. ++..+..+. +...+.. +.|+|+++.|+.+ +..++ .|..|+..+.
T Consensus 318 sp~~dg~-~l~~~~--~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~-~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 318 LPGSNNQ-FIWQSR--RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFE-STEASPLERHFYCIDIKGG 392 (706)
T ss_dssp CTTCSSE-EEEEEC--TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEE-ESSSCTTCBEEEEEETTCC
T ss_pred ecCCCCE-EEEEEc--cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEE-ecCCCCceEEEEEEEcCCC
Confidence 99 987 666665 78889999876 566666664 3455766 8999999998875 34444 6777776654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=191.15 Aligned_cols=232 Identities=11% Similarity=0.088 Sum_probs=177.2
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCC---CeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSS---KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~---~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
.+..++||| ++.|+++.++.|++||+.++ +...+. .+...+.+++|+|||++||+++ ++.|.+||+.+++...
T Consensus 110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~--~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLT--HGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCC--CSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcc--cCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 467889999 78888888899999999988 655443 5667899999999999999987 4689999999887766
Q ss_pred EecCCCcc----------------EEEEEee--CCEEEEEeCCC---------------------------------cEE
Q 014934 245 TMEGHRLR----------------VGALAWS--SSLLSSGSRDK---------------------------------SIL 273 (415)
Q Consensus 245 ~l~~h~~~----------------V~~l~~~--~~~l~sgs~dg---------------------------------~I~ 273 (415)
....+... +.+++|+ ++.|++++.|+ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 55544432 3678998 56788887665 789
Q ss_pred EEECCC-CCccEEEec--cccCCeEEEEEeCCCCEEEEEeC-----CCcEEEEECCCCceeEEeccCCC----cEEEEEE
Q 014934 274 QRDIRA-QEDFVSKLS--GHKSEVCGLKWSYDNRELASGGN-----DNRLFVWNQHSTQPVLKYCEHTA----AVKAIAW 341 (415)
Q Consensus 274 iwd~~~-~~~~~~~~~--~h~~~V~~l~~spdg~~lasg~~-----dg~I~iwd~~~~~~~~~~~~h~~----~V~~l~~ 341 (415)
+||+.+ +. ...... .|...+..++| |||++|++++. +..|++||+.+++....+..+.. .+..++|
T Consensus 267 ~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 267 VISPAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EECSSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEECCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 999987 65 333322 47778999999 99999997653 56899999999987776665543 4568999
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECC-CCcEEEEee-CCCCEEEE-EECCCCCeEEEEEecCCC--cEEEEECCC
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTT-TNTHLSCMD-TGSQVCNL-VWSKNVNELVSTHGYSQN--QIIVWRYPT 410 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~-t~~~~~~~~-~~~~V~~l-~~s~~~~~l~s~~g~~dg--~I~vw~~~s 410 (415)
+|+|+ ++++++ .|+.+++|.+. ++. +..+. +...|..+ .|+|+++.|+.+ +..++ .++||++..
T Consensus 345 spdg~-~~~~~~--~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~-~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 345 LDDGS-ILWSSE--RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFR-AGIESARESQIYAVPL 413 (741)
T ss_dssp CTTSC-EEEEEC--TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEE-ECSSCTTCBEEEEEET
T ss_pred CCCCe-EEEEec--CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEE-EeCCCCceEEEEEEEc
Confidence 99998 777776 78877777664 344 55443 45668777 599999988765 44555 899998753
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-19 Score=196.75 Aligned_cols=233 Identities=11% Similarity=0.069 Sum_probs=185.2
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecC----------CCCCeEEEEEc-CCCCeEEEEECCCcEEEEEC
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLG----------IDDSVCSVGWA-NRNTHLAVGTSHGKVQIWDA 237 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~----------~~~~V~~v~~s-p~g~~la~g~~dg~V~iwd~ 237 (415)
+..++|+| ++.|+++.++.|++|+.....+. .+... |...+.+++|+ |+|++||+++ ++.|.+|++
T Consensus 247 ~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 247 YYPRHLNTDGRRILFSKGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp SCEEEEEESSSCEEEEETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred cceeeEcCCCCEEEEEeCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 34668998 77888888999999999655544 22110 23368999999 9999999987 789999999
Q ss_pred CCCeeeEEecCCCc-cEEEEEee-CCEEEEEeCCCcEE-EEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 238 SRCKRVRTMEGHRL-RVGALAWS-SSLLSSGSRDKSIL-QRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 238 ~~~~~~~~l~~h~~-~V~~l~~~-~~~l~sgs~dg~I~-iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
..++.. .+..|.. .+..++|+ +..|+.++.++.|. +||+..+. ...+.+|...+..++|+|||++||+++.++.
T Consensus 325 ~~~~~~-~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~ 401 (1045)
T 1k32_A 325 SGTYVL-KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--AEKFEENLGNVFAMGVDRNGKFAVVANDRFE 401 (1045)
T ss_dssp TSSBEE-ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC--EEECCCCCCSEEEEEECTTSSEEEEEETTSE
T ss_pred CCCceE-EccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCC--ceEecCCccceeeeEECCCCCEEEEECCCCe
Confidence 877644 4667777 89999998 45788888888898 99998765 3445578889999999999999999999999
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcC-------CCCCeEEEEECCCCcEEEEeeCCCCEEEEEECC
Q 014934 315 LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGG-------TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSK 387 (415)
Q Consensus 315 I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg-------~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~ 387 (415)
|++||+.+++....+.+|...+.+++|+|+|+++++++.. ..++.|++||+.+++......+...+..+.|+|
T Consensus 402 v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~sp 481 (1045)
T 1k32_A 402 IMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA 481 (1045)
T ss_dssp EEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECT
T ss_pred EEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcC
Confidence 9999999998887777899999999999999966655431 123599999999988444444667788999999
Q ss_pred CCCeEEEEEecCCCcEEEEECC
Q 014934 388 NVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 388 ~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+|+.|++ ++.++...+|+..
T Consensus 482 dG~~l~~--~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 482 DSKNLYY--LSYRSLDPSPDRV 501 (1045)
T ss_dssp TSCEEEE--EESCCCCCEECSS
T ss_pred CCCEEEE--EecccCCcCcchh
Confidence 9999998 4566677777654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-19 Score=188.15 Aligned_cols=237 Identities=11% Similarity=0.061 Sum_probs=172.9
Q ss_pred ceeEeecCC-CcEEEEEcC----------CeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEE
Q 014934 169 YLNLVDWSS-HNVLAVGLG----------NCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWD 236 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d----------~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd 236 (415)
.+..++||| ++.|+++.+ +.|++||+.+++...+... .+...+.+++|+|||++||+++. +.|.+||
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence 478999999 777777753 6899999999887444322 33445899999999999999886 7999999
Q ss_pred CCCCeeeEEecCCCccE------------------EEEEee--CCEEEEEeCCC--------------------------
Q 014934 237 ASRCKRVRTMEGHRLRV------------------GALAWS--SSLLSSGSRDK-------------------------- 270 (415)
Q Consensus 237 ~~~~~~~~~l~~h~~~V------------------~~l~~~--~~~l~sgs~dg-------------------------- 270 (415)
+.+++.......+...+ .+++|+ ++.|++++.|+
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 99888776665544333 789998 46888877543
Q ss_pred --------cEEEEECCCCCccEEEeccc------cCCeEEEEEeCCCCEEEEEeC----CCcEEEEECCCCceeEEecc-
Q 014934 271 --------SILQRDIRAQEDFVSKLSGH------KSEVCGLKWSYDNRELASGGN----DNRLFVWNQHSTQPVLKYCE- 331 (415)
Q Consensus 271 --------~I~iwd~~~~~~~~~~~~~h------~~~V~~l~~spdg~~lasg~~----dg~I~iwd~~~~~~~~~~~~- 331 (415)
.|++||+.++. ....+..+ ...+..++|+|||++|++... +..|++||+.+++....+..
T Consensus 221 ~G~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNGPT-HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp TTSCCCEEEEEEEESSSSC-CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCCCeeEEEEEECCCCc-eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 79999998776 23444443 567899999999999877653 35799999999887665543
Q ss_pred CCCcEE----EEEEcCCCCcEEEE-EcCCCCC------eEEEEE-CCCCc--EEEEee-CCCCEEE-EEECCCCCeEEEE
Q 014934 332 HTAAVK----AIAWSPHLHGLLAS-GGGTADR------CIRFWN-TTTNT--HLSCMD-TGSQVCN-LVWSKNVNELVST 395 (415)
Q Consensus 332 h~~~V~----~l~~sp~~~~llas-ggg~~d~------~I~iwd-~~t~~--~~~~~~-~~~~V~~-l~~s~~~~~l~s~ 395 (415)
+...+. .++|+|+|+.+++. +. .++ .|.+|| ..+++ +...+. ....+.. +.|+|+|+.|+.+
T Consensus 300 ~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~ 377 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKDGRKFFFIRAI--PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFL 377 (723)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEE--CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEE
T ss_pred cCCEEeccCCCceEcCCCCeEEEEEec--ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEE
Confidence 334443 78999999987765 43 566 577788 44444 133343 3345655 6999999999875
Q ss_pred EecCC--CcEEEEECCC
Q 014934 396 HGYSQ--NQIIVWRYPT 410 (415)
Q Consensus 396 ~g~~d--g~I~vw~~~s 410 (415)
+..+ +.+.||++..
T Consensus 378 -~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 378 -STEDLPRRRQLYSANT 393 (723)
T ss_dssp -ESSSCTTCCEEEEECS
T ss_pred -EcCCCCcceEEEEEeC
Confidence 3444 7899999864
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-17 Score=161.12 Aligned_cols=235 Identities=12% Similarity=0.082 Sum_probs=165.3
Q ss_pred eeEeecCC-CcEEEEEcC-----CeEEEEECCC--CCeEEeEec-CCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCC
Q 014934 170 LNLVDWSS-HNVLAVGLG-----NCVYLWNACS--SKVTKLCDL-GIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASR 239 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d-----~~V~iwd~~~--~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~ 239 (415)
...++|+| +++|+++.. +.|.+|++.. ++...+... .+...+..+++ +|++|+++. .++.|.+|++..
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ 129 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence 45688999 676666644 6899987755 555444433 24557788888 888887776 578999999975
Q ss_pred CeeeEEe------cC--------CCccEEEEEee--CCEEEEE-eCCCcEEEEECCCCCc------c------EEEeccc
Q 014934 240 CKRVRTM------EG--------HRLRVGALAWS--SSLLSSG-SRDKSILQRDIRAQED------F------VSKLSGH 290 (415)
Q Consensus 240 ~~~~~~l------~~--------h~~~V~~l~~~--~~~l~sg-s~dg~I~iwd~~~~~~------~------~~~~~~h 290 (415)
...+..+ .+ +...+.+++|+ +++|+++ ..++.|.+|++..... . ......+
T Consensus 130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (361)
T 3scy_A 130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP 209 (361)
T ss_dssp TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence 4322211 11 12346889998 4555544 4588999999876542 1 1222344
Q ss_pred cCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCCCce--eEEec---cCCCcEEEEEEcCCCCcEEEEEcCCC-CCeEEEE
Q 014934 291 KSEVCGLKWSYDNRELASGG-NDNRLFVWNQHSTQP--VLKYC---EHTAAVKAIAWSPHLHGLLASGGGTA-DRCIRFW 363 (415)
Q Consensus 291 ~~~V~~l~~spdg~~lasg~-~dg~I~iwd~~~~~~--~~~~~---~h~~~V~~l~~sp~~~~llasggg~~-d~~I~iw 363 (415)
...+.+++|+|||++|++++ .++.|.+||+.+++. +..+. .+...+..++|+|+|++|+++.. . ++.|.+|
T Consensus 210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~--~~~~~i~v~ 287 (361)
T 3scy_A 210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR--LKADGVAIF 287 (361)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC--SSSCEEEEE
T ss_pred CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC--CCCCEEEEE
Confidence 56688999999999887777 689999999987744 33332 23455789999999997777764 4 6899999
Q ss_pred ECC--CCc--EEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 364 NTT--TNT--HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 364 d~~--t~~--~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
++. +++ .+..+..+..+.+++|+|+|++|+++ +..++.|.+|++.
T Consensus 288 ~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~-~~~~~~v~v~~~d 336 (361)
T 3scy_A 288 KVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVA-CRDTNVIQIFERD 336 (361)
T ss_dssp EECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEE-ETTTTEEEEEEEC
T ss_pred EEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEE-ECCCCCEEEEEEE
Confidence 985 455 44555556678899999999998885 4467899997664
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=178.29 Aligned_cols=226 Identities=11% Similarity=0.037 Sum_probs=162.1
Q ss_pred ceeEeecCC-CcEEEEE-c-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC---CCcEEEEECCC---
Q 014934 169 YLNLVDWSS-HNVLAVG-L-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS---HGKVQIWDASR--- 239 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~---dg~V~iwd~~~--- 239 (415)
.+..+.|+| ++.||.+ . ++.+.||++.+++..++.. .+...+.++.|+|| ++++++.. +...+||.+..
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~-~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR-EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS-SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec-ccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence 488999999 6777776 3 7899999997777655542 33368999999999 77777765 45566665533
Q ss_pred CeeeEEec-CCCccEEEEEeeCC-EEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC----C
Q 014934 240 CKRVRTME-GHRLRVGALAWSSS-LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND----N 313 (415)
Q Consensus 240 ~~~~~~l~-~h~~~V~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d----g 313 (415)
+... .+. .+...+.+++++++ .+++.+.++.+.+||+.++. . ..+..+.. .+++|+|||++||+++.+ +
T Consensus 101 g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-~-~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 101 GEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG-L-RELARLPG--FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp TCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-E-EEEEEESS--CEEEEEEETTEEEEEEEEETTEE
T ss_pred Cccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-E-EEeecCCC--ceEEECCCCCEEEEEEEcCCCCe
Confidence 2322 333 22333445555553 44555555556699998775 2 33333333 789999999999988777 7
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCC--eEEEEECCCCcEEEEee-CCCCEEEEE------
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR--CIRFWNTTTNTHLSCMD-TGSQVCNLV------ 384 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~--~I~iwd~~t~~~~~~~~-~~~~V~~l~------ 384 (415)
.|++||+.+++.. .+..|...+..++|+|+|+.|+ ++. .++ .|++||+.+++.. .+. +...+..+.
T Consensus 176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~-~~~--~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 176 SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTA-GLE--TAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEE-EEE--CSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEE
T ss_pred EEEEEcCCCCCce-EeecCCCccccceECCCCCEEE-Ecc--CCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccc
Confidence 8999999888764 6778999999999999998655 554 577 8999999999877 443 334455555
Q ss_pred --ECCCCCeEEEEEecCCCcEEEEEC
Q 014934 385 --WSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 385 --~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
|+|||..+++ +..++.+++|++
T Consensus 251 ~~~spdg~~~~~--~~~~g~~~l~~~ 274 (582)
T 3o4h_A 251 LGYLPDGRLAVV--ARREGRSAVFID 274 (582)
T ss_dssp EEECTTSCEEEE--EEETTEEEEEET
T ss_pred eeEcCCCcEEEE--EEcCCcEEEEEE
Confidence 9999965555 567899999998
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=190.91 Aligned_cols=233 Identities=13% Similarity=0.156 Sum_probs=167.4
Q ss_pred EeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCC---CeEEEEEcCCCCeEEEEEC---------CCcEEEEECC
Q 014934 172 LVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDD---SVCSVGWANRNTHLAVGTS---------HGKVQIWDAS 238 (415)
Q Consensus 172 ~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~---~V~~v~~sp~g~~la~g~~---------dg~V~iwd~~ 238 (415)
.+.|+| +.+++.+.++.|++||+.+++...+.. .+.. .+.+++|||||++||+++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 568999 666766678999999999999877764 2222 4899999999999999876 6899999999
Q ss_pred CCeee--EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEE-eccccCCe-----------------EE
Q 014934 239 RCKRV--RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSK-LSGHKSEV-----------------CG 296 (415)
Q Consensus 239 ~~~~~--~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~h~~~V-----------------~~ 296 (415)
+++.+ ..+ ...+..++|+ ++.|+.+. ++.|++||+.++.. ... ..++...| .+
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~-~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP-FQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC-EECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc-EEEecCCCcCCeEcccccceeeeecccCccc
Confidence 88763 222 2458889998 46777775 78999999987763 222 12333322 48
Q ss_pred EEEeCCCCEEEEEeCCC----------------------------------cEEEEECCCCcee--EE------eccCCC
Q 014934 297 LKWSYDNRELASGGNDN----------------------------------RLFVWNQHSTQPV--LK------YCEHTA 334 (415)
Q Consensus 297 l~~spdg~~lasg~~dg----------------------------------~I~iwd~~~~~~~--~~------~~~h~~ 334 (415)
++|+|||++||+++.|. .|++||+.+++.. .. +.+|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999987652 7899999887653 12 335888
Q ss_pred cEEEEEEcCCCCcEEEEEcC--CCCCeEEEEE----CCCCcEEEEe-----eCCCCEE-----EEEECCCCCeEEEEEec
Q 014934 335 AVKAIAWSPHLHGLLASGGG--TADRCIRFWN----TTTNTHLSCM-----DTGSQVC-----NLVWSKNVNELVSTHGY 398 (415)
Q Consensus 335 ~V~~l~~sp~~~~llasggg--~~d~~I~iwd----~~t~~~~~~~-----~~~~~V~-----~l~~s~~~~~l~s~~g~ 398 (415)
.+..++|+|+++ ++++... .....|.+|| +.++++...+ .+...+. .+.|+|+|+.|+...+.
T Consensus 254 ~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 332 (719)
T 1z68_A 254 YFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD 332 (719)
T ss_dssp EEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred eEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence 899999999975 6665321 1124588999 8887655443 2344454 78999999977653344
Q ss_pred CCC--cEEEEECCCC
Q 014934 399 SQN--QIIVWRYPTM 411 (415)
Q Consensus 399 ~dg--~I~vw~~~s~ 411 (415)
.+| .|.+|++.+.
T Consensus 333 ~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 333 KDGYKHIHYIKDTVE 347 (719)
T ss_dssp TTSCEEEEEESSCST
T ss_pred cCCceEEEEEECCCC
Confidence 455 5666676543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-17 Score=157.42 Aligned_cols=219 Identities=14% Similarity=0.132 Sum_probs=154.5
Q ss_pred CeEEEE--ECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC---CCcEEEEECCCCe--eeEEecCCCccEEEEEee
Q 014934 187 NCVYLW--NACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS---HGKVQIWDASRCK--RVRTMEGHRLRVGALAWS 259 (415)
Q Consensus 187 ~~V~iw--d~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~---dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~~~ 259 (415)
+.|++| |..+++...+....+...+..++|+|+|+ |++++. ++.|.+||+.+++ .+..+..+...+..++|+
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s 94 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD 94 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence 455555 55567665544334557788999999999 555544 6899999997665 444445567778889998
Q ss_pred --CCEEEEEe-CCCcEEEEECCCCCc--cEEEecc---------ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC-CCc
Q 014934 260 --SSLLSSGS-RDKSILQRDIRAQED--FVSKLSG---------HKSEVCGLKWSYDNRELASGGNDNRLFVWNQH-STQ 324 (415)
Q Consensus 260 --~~~l~sgs-~dg~I~iwd~~~~~~--~~~~~~~---------h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~-~~~ 324 (415)
+++|++++ .++.|.+||+..... .+..+.. +...+.+++|+|+|++++++..++.|.+||+. +++
T Consensus 95 pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~ 174 (347)
T 3hfq_A 95 EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ 174 (347)
T ss_dssp TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence 46777777 789999999964321 1222211 12248899999999977777778999999998 454
Q ss_pred ee--EEecc-CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC--CcE--EEEeeC-C------CCEEEEEECCCCC
Q 014934 325 PV--LKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT--NTH--LSCMDT-G------SQVCNLVWSKNVN 390 (415)
Q Consensus 325 ~~--~~~~~-h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t--~~~--~~~~~~-~------~~V~~l~~s~~~~ 390 (415)
.. ..+.. ....+..++|+|+|+.+++++. .++.|.+|++.. ++. +..+.. . ..+..++|+|+|+
T Consensus 175 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 175 LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE--LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp EEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred EEEeeeEEcCCCCCCceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 32 22222 2336788999999997888776 689999999874 543 223321 1 4588899999999
Q ss_pred eEEEEEecCCCcEEEEECC
Q 014934 391 ELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 391 ~l~s~~g~~dg~I~vw~~~ 409 (415)
+|+++ +..++.|.+|++.
T Consensus 253 ~l~v~-~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 253 FLYVS-NRGYNTLAVFAVT 270 (347)
T ss_dssp EEEEE-EETTTEEEEEEEC
T ss_pred EEEEE-eCCCCEEEEEEEC
Confidence 88664 4568899999986
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-17 Score=161.21 Aligned_cols=240 Identities=9% Similarity=0.024 Sum_probs=165.6
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECC-CCCeEEeEecCCCCCeEEEEEcCCCCe--EEEEE-------------CCCc
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNAC-SSKVTKLCDLGIDDSVCSVGWANRNTH--LAVGT-------------SHGK 231 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~-~~~~~~~~~~~~~~~V~~v~~sp~g~~--la~g~-------------~dg~ 231 (415)
.+..++|+| +++|+++..+.|.+|++. +++...+......+.+.+++|+|+|++ ++++. .+|.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~ 120 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY 120 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred CCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCce
Confidence 356788999 676666654499999987 777655443211134667899999994 44543 6899
Q ss_pred EEEEECC-CCeeeEEec----CCCccEEEEEee--CCEEEEEe-CCCcEEEEECC-CCCcc-EEEec--cccCCeEEEEE
Q 014934 232 VQIWDAS-RCKRVRTME----GHRLRVGALAWS--SSLLSSGS-RDKSILQRDIR-AQEDF-VSKLS--GHKSEVCGLKW 299 (415)
Q Consensus 232 V~iwd~~-~~~~~~~l~----~h~~~V~~l~~~--~~~l~sgs-~dg~I~iwd~~-~~~~~-~~~~~--~h~~~V~~l~~ 299 (415)
+.+|++. +++....+. .+...+.+++|+ +++|+++. .++.|.+||+. +++.. +..+. .|...+..++|
T Consensus 121 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~ 200 (365)
T 1jof_A 121 GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAM 200 (365)
T ss_dssp EEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEE
T ss_pred EEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEE
Confidence 9999997 455443333 245679999998 45777665 46799999998 55421 22232 24567999999
Q ss_pred eCCCCEEEEEeC-CCcEEEEECC--CCcee---EEec-------cCCC------cEEEEE-EcCCCCcEEEEEcCCCC--
Q 014934 300 SYDNRELASGGN-DNRLFVWNQH--STQPV---LKYC-------EHTA------AVKAIA-WSPHLHGLLASGGGTAD-- 357 (415)
Q Consensus 300 spdg~~lasg~~-dg~I~iwd~~--~~~~~---~~~~-------~h~~------~V~~l~-~sp~~~~llasggg~~d-- 357 (415)
+|||++|++++. ++.|.+|++. +++.. ..+. +|.. .+..++ |+|+|+.|+++..+ .+
T Consensus 201 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~-~~~~ 279 (365)
T 1jof_A 201 HPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA-NKFE 279 (365)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE-SSTT
T ss_pred CCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC-CCCC
Confidence 999999988775 6899999765 45542 1222 1222 588999 99999977766531 22
Q ss_pred --CeEEEEECC-CCcEEE---Eee-CCCCEEEEEECC---CCCeEEEEEecCCCcEEEEECCC
Q 014934 358 --RCIRFWNTT-TNTHLS---CMD-TGSQVCNLVWSK---NVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 358 --~~I~iwd~~-t~~~~~---~~~-~~~~V~~l~~s~---~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+.|.+|++. +|+... .+. ....+..++|+| +|++|+++ +..++.|.+|++..
T Consensus 280 ~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~-~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 280 LQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT-DDQEGWLEIYRWKD 341 (365)
T ss_dssp SCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE-CSSSCEEEEEEEET
T ss_pred CCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEE-EcCCCeEEEEEEch
Confidence 289999996 676543 233 344567789999 89999884 33458999999864
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-16 Score=153.34 Aligned_cols=220 Identities=7% Similarity=0.047 Sum_probs=157.5
Q ss_pred CCeEEEEEC--CCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC----CcEEEEECCC--Ce--eeEEecCCCccEEE
Q 014934 186 GNCVYLWNA--CSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH----GKVQIWDASR--CK--RVRTMEGHRLRVGA 255 (415)
Q Consensus 186 d~~V~iwd~--~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d----g~V~iwd~~~--~~--~~~~l~~h~~~V~~ 255 (415)
++.|++|.+ .+++...+... +...+..++|+|+|++|++++.+ |.|.+|++.. ++ .+.....+......
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~ 104 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCY 104 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEE
T ss_pred CCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEE
Confidence 457888754 66777666654 66788899999999999998886 7999998865 43 33444445567778
Q ss_pred EEeeCCEEEEEe-CCCcEEEEECCCCCccE---E--Eecc--------ccCCeEEEEEeCCCCEEEEEe-CCCcEEEEEC
Q 014934 256 LAWSSSLLSSGS-RDKSILQRDIRAQEDFV---S--KLSG--------HKSEVCGLKWSYDNRELASGG-NDNRLFVWNQ 320 (415)
Q Consensus 256 l~~~~~~l~sgs-~dg~I~iwd~~~~~~~~---~--~~~~--------h~~~V~~l~~spdg~~lasg~-~dg~I~iwd~ 320 (415)
+++++++|++++ .++.|.+|++....... . ...+ +...+.+++|+|+|++|++++ .++.|.+|++
T Consensus 105 ~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 184 (361)
T 3scy_A 105 LTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNI 184 (361)
T ss_dssp EEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 888777777666 68899999997543211 1 1111 123458899999999776655 5889999988
Q ss_pred CCCce------e-------EEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE--EEEee----CCCCEE
Q 014934 321 HSTQP------V-------LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH--LSCMD----TGSQVC 381 (415)
Q Consensus 321 ~~~~~------~-------~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~--~~~~~----~~~~V~ 381 (415)
..... + .....+...+..++|+|+++.+++++. .++.|.+|++.+++. +..+. +.....
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~ 262 (361)
T 3scy_A 185 NPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE--IGGTVIAFRYADGMLDEIQTVAADTVNAQGSG 262 (361)
T ss_dssp CTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTCEEEEEEEETTEEEEEEEEESCSSCCCCEE
T ss_pred cCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC--CCCeEEEEEecCCceEEeEEEecCCCCCCCcc
Confidence 75431 1 112244567889999999997777775 689999999987754 33332 224578
Q ss_pred EEEECCCCCeEEEEEecC-CCcEEEEECC
Q 014934 382 NLVWSKNVNELVSTHGYS-QNQIIVWRYP 409 (415)
Q Consensus 382 ~l~~s~~~~~l~s~~g~~-dg~I~vw~~~ 409 (415)
.++|+|+|++|+++ ... ++.|.+|++.
T Consensus 263 ~i~~spdg~~l~v~-~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 263 DIHLSPDGKYLYAS-NRLKADGVAIFKVD 290 (361)
T ss_dssp EEEECTTSSEEEEE-ECSSSCEEEEEEEC
T ss_pred cEEECCCCCEEEEE-CCCCCCEEEEEEEc
Confidence 99999999998775 334 6899999985
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-17 Score=180.13 Aligned_cols=234 Identities=10% Similarity=0.004 Sum_probs=182.1
Q ss_pred ceeEeecCCCcEEEEE-cCCeEE-EEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSSHNVLAVG-LGNCVY-LWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~-~d~~V~-iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.+..+.|+.+..|+++ .+..|+ +|+..+++...+. ++...+.+++|+|||++||+++.++.|++||+.+++....+
T Consensus 339 ~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~ 416 (1045)
T 1k32_A 339 RYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE 416 (1045)
T ss_dssp EEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec
Confidence 5778899943455554 456788 9999888766554 67789999999999999999999999999999999888877
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCC----------cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDK----------SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg----------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
.+|...+.+++|+ +++|++++.++ .|++||+.++. ...+..|...+..++|+|||++|++++.++.
T Consensus 417 ~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~ 494 (1045)
T 1k32_A 417 RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSL 494 (1045)
T ss_dssp ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCC
T ss_pred cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEecccC
Confidence 7899999999998 46787776644 89999998765 5677788888999999999999999998877
Q ss_pred EEEEECCCCc-------------------------------------------eeEEeccCCCcEEEEEEcCCCCcEEEE
Q 014934 315 LFVWNQHSTQ-------------------------------------------PVLKYCEHTAAVKAIAWSPHLHGLLAS 351 (415)
Q Consensus 315 I~iwd~~~~~-------------------------------------------~~~~~~~h~~~V~~l~~sp~~~~llas 351 (415)
..+|+..... .+..+..|.+.+..++++|++..+++.
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~ 574 (1045)
T 1k32_A 495 DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV 574 (1045)
T ss_dssp CCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEEC
T ss_pred CcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEe
Confidence 7766643211 123344566788999999998644431
Q ss_pred ----------EcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 352 ----------GGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 352 ----------ggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
.+......|.+||+.+++..... ..+..++|+|||+.|+++ .. +.|++|++.+.+
T Consensus 575 ~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~~v~~~~~S~DG~~l~~~--~~-~~i~~~d~~~~~ 639 (1045)
T 1k32_A 575 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVR--KD-DGKIYTFPLEKP 639 (1045)
T ss_dssp CCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEE--ET-TSCEEEEESSCT
T ss_pred cccCcccccccccCCCceEEEEECCCCcEEEee---cCcceEEECCCCCEEEEE--cC-CcEEEEeCccCc
Confidence 11114568999999998854333 568889999999999984 33 489999998765
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-16 Score=148.69 Aligned_cols=236 Identities=12% Similarity=0.091 Sum_probs=178.8
Q ss_pred ceeEeecCC-CcEEEEEcCC-------------------------eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCe
Q 014934 169 YLNLVDWSS-HNVLAVGLGN-------------------------CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTH 222 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~-------------------------~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~ 222 (415)
.+..|++++ ++++++..++ .|++||..++++.......+-..+..++++++|++
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l 104 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNY 104 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCE
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCE
Confidence 478899999 7777777544 69999999999876654344467999999999998
Q ss_pred EEEEECCCcEEEEECCCCe-eeEEe---------cCCCccEEEEEeeC---CEEEEEe-CCCcEEEEECCCCCccEEEec
Q 014934 223 LAVGTSHGKVQIWDASRCK-RVRTM---------EGHRLRVGALAWSS---SLLSSGS-RDKSILQRDIRAQEDFVSKLS 288 (415)
Q Consensus 223 la~g~~dg~V~iwd~~~~~-~~~~l---------~~h~~~V~~l~~~~---~~l~sgs-~dg~I~iwd~~~~~~~~~~~~ 288 (415)
+++...++.|++||..... .+..+ .++......|++++ .++++.+ .++.|++||.. +. .+..+.
T Consensus 105 ~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~-~~~~~~ 182 (329)
T 3fvz_A 105 WVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GK-FVTQWG 182 (329)
T ss_dssp EEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SC-EEEEEC
T ss_pred EEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CC-EEEEec
Confidence 8888888999999986442 45555 34455788999984 4566665 58999999943 33 344443
Q ss_pred c----------ccCCeEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceeEEec--cCCCcEEEEEEcCCCCcEEEEEc--
Q 014934 289 G----------HKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGG-- 353 (415)
Q Consensus 289 ~----------h~~~V~~l~~spd-g~~lasg~~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~llasgg-- 353 (415)
. +-....+|+++|+ +.++++...++.|++||..+++.+..+. .+...+.+++|+| + .++++.+
T Consensus 183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~ 260 (329)
T 3fvz_A 183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G-FLFAVNGKP 260 (329)
T ss_dssp EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T-EEEEEECCC
T ss_pred cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C-EEEEeCCCE
Confidence 2 2234899999998 7777788888999999999898888874 4667889999999 3 2444432
Q ss_pred ---CCCCCeEEEEECCCCcEEEEee----CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 354 ---GTADRCIRFWNTTTNTHLSCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 354 ---g~~d~~I~iwd~~t~~~~~~~~----~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
...+..|++||..+++.+..+. +...+.+++++++|..+++ ...++.|++|+...
T Consensus 261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyva--d~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIG--DAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEE--ESSSCCEEEEEEEE
T ss_pred EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEE--ECCCCEEEEEeCCc
Confidence 1135689999999999998874 3456899999999966666 66788999999754
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=3.8e-17 Score=172.85 Aligned_cols=237 Identities=14% Similarity=0.159 Sum_probs=167.2
Q ss_pred eEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCC-----CeEEEEEcCCCCeEEEEECC---------CcEEEE
Q 014934 171 NLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDD-----SVCSVGWANRNTHLAVGTSH---------GKVQIW 235 (415)
Q Consensus 171 ~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~-----~V~~v~~sp~g~~la~g~~d---------g~V~iw 235 (415)
..+.|+| +.+|+.+ ++.|++||+.+++...++. .|.. ....+.|||||++|++++.+ +.+.+|
T Consensus 20 ~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEEC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred cccEECCCCcEEEEc-CCcEEEEECCCCceEEEEe-chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 3678999 6677776 9999999999999877765 3332 22458999999999998876 567799
Q ss_pred ECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCe-----------------EE
Q 014934 236 DASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV-----------------CG 296 (415)
Q Consensus 236 d~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----------------~~ 296 (415)
|+.+++.. .+..|...+...+|+ ++.|+.+ .|+.|++||+.++.....+..++...+ .+
T Consensus 98 d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~ 175 (740)
T 4a5s_A 98 DLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (740)
T ss_dssp ETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred ECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcc
Confidence 99998755 466778889999999 4677777 468999999987763222223333323 35
Q ss_pred EEEeCCCCEEEEEeCCC------------------------------------cEEEEECCC---Cc--eeEEec-----
Q 014934 297 LKWSYDNRELASGGNDN------------------------------------RLFVWNQHS---TQ--PVLKYC----- 330 (415)
Q Consensus 297 l~~spdg~~lasg~~dg------------------------------------~I~iwd~~~---~~--~~~~~~----- 330 (415)
+.|||||+.||.++.|. .|+|||+.+ ++ ....+.
T Consensus 176 ~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~ 255 (740)
T 4a5s_A 176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM 255 (740)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred eEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence 89999999999875321 588999988 73 233443
Q ss_pred -cCCCcEEEEEEcCCCCcEEEEEc-CCCCCeEEEEECCCCc----EE--EE---eeCCCCE-----EEEEECCCCCeEE-
Q 014934 331 -EHTAAVKAIAWSPHLHGLLASGG-GTADRCIRFWNTTTNT----HL--SC---MDTGSQV-----CNLVWSKNVNELV- 393 (415)
Q Consensus 331 -~h~~~V~~l~~sp~~~~llasgg-g~~d~~I~iwd~~t~~----~~--~~---~~~~~~V-----~~l~~s~~~~~l~- 393 (415)
+|...+..++|+|+|+.++.... +..+..|++||+.+|+ +. .. -.+...| ....|+|||+.|+
T Consensus 256 ~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~ 335 (740)
T 4a5s_A 256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYK 335 (740)
T ss_dssp HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEE
T ss_pred CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEE
Confidence 37788999999999984443322 1234579999999987 22 11 1233333 3688999999887
Q ss_pred EEEecCCC--cEEEEECCCCc
Q 014934 394 STHGYSQN--QIIVWRYPTMS 412 (415)
Q Consensus 394 s~~g~~dg--~I~vw~~~s~~ 412 (415)
.. ...+| .|++|+..+.+
T Consensus 336 ~~-s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 336 II-SNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EE-ECTTSCEEEEEEETTCSS
T ss_pred EE-EcCCCceEEEEEECCCCc
Confidence 43 33343 67888876543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=151.04 Aligned_cols=198 Identities=13% Similarity=0.056 Sum_probs=151.7
Q ss_pred eeEeecCC-CcEEE-EEc-CCeEEEEECCCCCeEEeEecCCC----CCeEEEEEcCCCCeEEEEE------------CCC
Q 014934 170 LNLVDWSS-HNVLA-VGL-GNCVYLWNACSSKVTKLCDLGID----DSVCSVGWANRNTHLAVGT------------SHG 230 (415)
Q Consensus 170 i~~l~ws~-~~~la-~~~-d~~V~iwd~~~~~~~~~~~~~~~----~~V~~v~~sp~g~~la~g~------------~dg 230 (415)
+..++|+| ++.++ ++. ++.|++||+.+++....+..++. ..+.+++|+|+|++|+++. .++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence 45788999 54544 443 57999999999998777664431 2677899999999999886 579
Q ss_pred cEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec--------------------
Q 014934 231 KVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS-------------------- 288 (415)
Q Consensus 231 ~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------------------- 288 (415)
.|.+||+.+++.+..+.. ...+.+++|+ +++|+++ ++.|.+||+.++.. ...+.
T Consensus 116 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~ 191 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTL-VEDKPIQSWEAETYAQPDVLAVWNQ 191 (337)
T ss_dssp EEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEE-EEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred eEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcE-eeeeeccccCCCceeCCCccEEeee
Confidence 999999999888877764 3457778888 4567666 68899999876542 22221
Q ss_pred ----------------------------------------------cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 289 ----------------------------------------------GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 289 ----------------------------------------------~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
.+...+.+++|+|+|++|+++ ++.|.+||+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~ 269 (337)
T 1pby_B 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK 269 (337)
T ss_dssp CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred ccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence 112245579999999999988 79999999999
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG 377 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~ 377 (415)
++.+..+.. ...+.+++|+|+++.++++ + .++.|++||+.+++.+..+..+
T Consensus 270 ~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-~--~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 270 NASIKRVPL-PHSYYSVNVSTDGSTVWLG-G--ALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp TEEEEEEEC-SSCCCEEEECTTSCEEEEE-S--BSSEEEEEETTTCCEEEEEECG
T ss_pred CcCcceecC-CCceeeEEECCCCCEEEEE-c--CCCcEEEEECcCCcEEEEEEcC
Confidence 988877754 3567899999999866664 4 5899999999999998887643
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-17 Score=158.45 Aligned_cols=241 Identities=13% Similarity=0.082 Sum_probs=167.9
Q ss_pred cceeEeecCC-CcEEEEEc--CC--eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 168 FYLNLVDWSS-HNVLAVGL--GN--CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~~--d~--~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.|+...+|+| ++.|+++. ++ .|++||+.+++...+.. ++...+.++.|+|||++|+.+..++.|.+||+.+++.
T Consensus 36 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 36 NYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE-GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC-SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred hhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee-CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 3445578999 67666664 34 59999999998877664 4445555778999999999999999999999999887
Q ss_pred eEEecCCCccEEEEEe--e--CCEEEEE----------------------eCCCcEEEEECCCCCccEEEeccccCCeEE
Q 014934 243 VRTMEGHRLRVGALAW--S--SSLLSSG----------------------SRDKSILQRDIRAQEDFVSKLSGHKSEVCG 296 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~--~--~~~l~sg----------------------s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 296 (415)
...+..+...+....| + +..++.. ..+..|++||+.+++ ...+..+...+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~ 192 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGH 192 (388)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEE
T ss_pred eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccc
Confidence 7767666666655554 3 4555532 244679999998875 4455567778999
Q ss_pred EEEeC-CCCEEEEEeCC------CcEEEEECCCCceeEEeccCC--CcEEEEEEcCCCCcEEEEEcC--CCCCeEEEEEC
Q 014934 297 LKWSY-DNRELASGGND------NRLFVWNQHSTQPVLKYCEHT--AAVKAIAWSPHLHGLLASGGG--TADRCIRFWNT 365 (415)
Q Consensus 297 l~~sp-dg~~lasg~~d------g~I~iwd~~~~~~~~~~~~h~--~~V~~l~~sp~~~~llasggg--~~d~~I~iwd~ 365 (415)
++|+| ||+.||.+..+ ..|.++|+..+.. ..+..+. ..+..++|+|+|+.|+..+.. ..+..|++||+
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (388)
T 3pe7_A 193 PIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP 271 (388)
T ss_dssp EEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred cEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEec
Confidence 99999 99999887753 3788999876544 4444444 357889999999977554431 11224999999
Q ss_pred CCCcEEEEeeCCCC------EEEEEECCCCCeEEEEEe-------cCCCcEEEEECCCCc
Q 014934 366 TTNTHLSCMDTGSQ------VCNLVWSKNVNELVSTHG-------YSQNQIIVWRYPTMS 412 (415)
Q Consensus 366 ~t~~~~~~~~~~~~------V~~l~~s~~~~~l~s~~g-------~~dg~I~vw~~~s~~ 412 (415)
.+++.......... ...+.|+|+|+.|+.+.. ..+..|++||..+.+
T Consensus 272 ~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 272 ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 99985432221110 112379999999886421 346689999998754
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-15 Score=139.03 Aligned_cols=233 Identities=9% Similarity=0.111 Sum_probs=170.1
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEec-----CCCCCeEEEEE-cCCCCeEEEEEC-CCcEEEEECCC
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-----GIDDSVCSVGW-ANRNTHLAVGTS-HGKVQIWDASR 239 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~-----~~~~~V~~v~~-sp~g~~la~g~~-dg~V~iwd~~~ 239 (415)
....+++++ ++++++. .++.|++|+.. ++....+.. ++...+.++++ .++|.++++... ++.|.+|| .+
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~ 108 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QY 108 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TT
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CC
Confidence 467888888 6666665 46899999987 555444421 22357899999 467776665543 78999999 56
Q ss_pred CeeeEEec-CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec--cccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 240 CKRVRTME-GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS--GHKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 240 ~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
++.+..+. .+...+.+++++ ++++++...++.|.+||.... .+..+. .+...+.+++++++|+++++...++.
T Consensus 109 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 109 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC--EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE
Confidence 77666664 344678899997 467777777899999996533 334432 34557899999999998888888999
Q ss_pred EEEEECCCCceeEEeccC--CCcEEEEEEcCCCCcEEEEEcCCCCC-eEEEEECCCCcEEEEeeCC---CCEEEEEECCC
Q 014934 315 LFVWNQHSTQPVLKYCEH--TAAVKAIAWSPHLHGLLASGGGTADR-CIRFWNTTTNTHLSCMDTG---SQVCNLVWSKN 388 (415)
Q Consensus 315 I~iwd~~~~~~~~~~~~h--~~~V~~l~~sp~~~~llasggg~~d~-~I~iwd~~t~~~~~~~~~~---~~V~~l~~s~~ 388 (415)
|++||. +++.+..+..+ ...+..++++++|. ++++.. .++ .|.+||. +++.+..+... ..+.+++++++
T Consensus 187 i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 187 VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGE-ILIADN--HNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCC-EEEEEC--SSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred EEEEcC-CCCEEEEEccCCccCCCcEEEECCCCC-EEEEeC--CCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCC
Confidence 999997 45566666443 36789999999986 777664 465 9999995 56777666532 34789999999
Q ss_pred CCeEEEEEecCCCcEEEEECCCCcc
Q 014934 389 VNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
|+.+++ . .++.|++|++.....
T Consensus 262 g~l~vs--~-~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 262 GSVVLA--S-KDYRLYIYRYVQLAP 283 (286)
T ss_dssp TEEEEE--E-TTTEEEEEECSCCCC
T ss_pred CcEEEE--C-CCCeEEEEEcccccc
Confidence 986665 3 589999999976544
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-17 Score=167.29 Aligned_cols=221 Identities=8% Similarity=0.007 Sum_probs=162.3
Q ss_pred ceeEeecCCCcEEEEEcC----C--eEEEEEC--CCCCeEEeEecCCCCCeEEEEEcCCCCe-EEEEECCCcEEEEECCC
Q 014934 169 YLNLVDWSSHNVLAVGLG----N--CVYLWNA--CSSKVTKLCDLGIDDSVCSVGWANRNTH-LAVGTSHGKVQIWDASR 239 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~~d----~--~V~iwd~--~~~~~~~~~~~~~~~~V~~v~~sp~g~~-la~g~~dg~V~iwd~~~ 239 (415)
.+..+.|+|+++++++.. . .|+.++. ..+.. .+ .....+...+|+|+|+. +++...++.+.+||+.+
T Consensus 66 ~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l---~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~ 141 (582)
T 3o4h_A 66 SVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RL---EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDG 141 (582)
T ss_dssp EECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-EC---TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEET
T ss_pred ccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cc---cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccC
Confidence 577899999866665542 3 3555565 33332 22 22334557789998863 33344455566999998
Q ss_pred CeeeEEecCCCccEEEEEee--CCEEEEEeCC----CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC
Q 014934 240 CKRVRTMEGHRLRVGALAWS--SSLLSSGSRD----KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN 313 (415)
Q Consensus 240 ~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg 313 (415)
++.......+. .+++|+ ++.|++++.+ +.|++||+.++. ...+..|...+..++|+|||++|+++..++
T Consensus 142 g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~--~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~ 216 (582)
T 3o4h_A 142 GGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG--LRVFDSGEGSFSSASISPGMKVTAGLETAR 216 (582)
T ss_dssp TEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC--CEEECCSSCEEEEEEECTTSCEEEEEECSS
T ss_pred CcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC--ceEeecCCCccccceECCCCCEEEEccCCC
Confidence 87665554333 677776 7899988777 789999998876 346778888899999999999999888888
Q ss_pred --cEEEEECCCCceeEEeccCCCcEEEEE--------EcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEE
Q 014934 314 --RLFVWNQHSTQPVLKYCEHTAAVKAIA--------WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNL 383 (415)
Q Consensus 314 --~I~iwd~~~~~~~~~~~~h~~~V~~l~--------~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l 383 (415)
.|++||+.+++.. .+..|...+..++ |+|+| .++++++ .|+.+++|++ |+.+. .....|.++
T Consensus 217 ~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~--~~g~~~l~~~--g~~~~--~~~~~v~~~ 288 (582)
T 3o4h_A 217 EARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVAR--REGRSAVFID--GERVE--APQGNHGRV 288 (582)
T ss_dssp CEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEE--ETTEEEEEET--TEEEC--CCSSEEEEE
T ss_pred eeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEE--cCCcEEEEEE--CCeec--cCCCceEEE
Confidence 8999999998877 7778887777777 99999 6888876 7999999999 76554 233568899
Q ss_pred EECCCCCeEEEEEecCC---CcEEEEECC
Q 014934 384 VWSKNVNELVSTHGYSQ---NQIIVWRYP 409 (415)
Q Consensus 384 ~~s~~~~~l~s~~g~~d---g~I~vw~~~ 409 (415)
+|+ +++.+++. +.+ ..|.+|+..
T Consensus 289 ~~s-dg~~l~~~--s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 289 VLW-RGKLVTSH--TSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEE-TTEEEEEE--EETTEEEEEEEETTC
T ss_pred Eec-CCEEEEEE--cCCCCCCeEEEEcCC
Confidence 999 88888764 333 346666654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=173.76 Aligned_cols=237 Identities=11% Similarity=0.107 Sum_probs=166.1
Q ss_pred ceeEeecCC-CcEEEEEcC----------CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC
Q 014934 169 YLNLVDWSS-HNVLAVGLG----------NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA 237 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d----------~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~ 237 (415)
.+..++||| ++.|+++.+ +.|++||+.+++......+ ...+.+++|+|||++||++. ++.|++||+
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~ 137 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQR 137 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESS
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec--CcccccceECCCCCEEEEEE-CCeEEEEeC
Confidence 367899999 787877743 7899999999876211111 25689999999999999985 789999999
Q ss_pred CCCeeeEEe-cCCCccE-----------------EEEEee--CCEEEEEeCCC---------------------------
Q 014934 238 SRCKRVRTM-EGHRLRV-----------------GALAWS--SSLLSSGSRDK--------------------------- 270 (415)
Q Consensus 238 ~~~~~~~~l-~~h~~~V-----------------~~l~~~--~~~l~sgs~dg--------------------------- 270 (415)
.+++..... .++...| .+++|+ ++.|++++.|.
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~ 217 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA 217 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence 888765433 2333323 479998 46888887552
Q ss_pred -------cEEEEECCCCCcc--EE-----EeccccCCeEEEEEeCCCCEEEEEeCC----CcEEEEE----CCCCceeEE
Q 014934 271 -------SILQRDIRAQEDF--VS-----KLSGHKSEVCGLKWSYDNRELASGGND----NRLFVWN----QHSTQPVLK 328 (415)
Q Consensus 271 -------~I~iwd~~~~~~~--~~-----~~~~h~~~V~~l~~spdg~~lasg~~d----g~I~iwd----~~~~~~~~~ 328 (415)
.|++||+.++... +. .+.+|...+..++|+||++++++.... ..|.+|| +.+++....
T Consensus 218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~ 297 (719)
T 1z68_A 218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT 297 (719)
T ss_dssp TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence 7889999876521 11 123577889999999998877775433 2489999 877765444
Q ss_pred e----ccCCCcEE-----EEEEcCCCCcEEE-EEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEec
Q 014934 329 Y----CEHTAAVK-----AIAWSPHLHGLLA-SGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 329 ~----~~h~~~V~-----~l~~sp~~~~lla-sggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
+ ..|...+. .++|+|+|+.++. ++.......|.+||+.+++......+...+..+.++ +++.|+.+ +.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~-~~ 375 (719)
T 1z68_A 298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYS-SN 375 (719)
T ss_dssp GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEE-ES
T ss_pred EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEE-Ee
Confidence 4 36777676 8899999987665 333112346888898887743332344567887777 88888775 33
Q ss_pred C----CCcEEEEECCC
Q 014934 399 S----QNQIIVWRYPT 410 (415)
Q Consensus 399 ~----dg~I~vw~~~s 410 (415)
. ++.+.+|.++.
T Consensus 376 ~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 376 EFEEYPGRRNIYRISI 391 (719)
T ss_dssp CGGGCTTCBEEEEEEC
T ss_pred cCCCCCceEEEEEEeC
Confidence 3 47888888753
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.3e-16 Score=146.93 Aligned_cols=197 Identities=13% Similarity=0.073 Sum_probs=147.3
Q ss_pred eeEeecCC-CcEEE-EE-cCCeEEEEECCCCCeEEeEecCC-----CCCeEEEEEcCCCCeEEEEECC------------
Q 014934 170 LNLVDWSS-HNVLA-VG-LGNCVYLWNACSSKVTKLCDLGI-----DDSVCSVGWANRNTHLAVGTSH------------ 229 (415)
Q Consensus 170 i~~l~ws~-~~~la-~~-~d~~V~iwd~~~~~~~~~~~~~~-----~~~V~~v~~sp~g~~la~g~~d------------ 229 (415)
+..++|+| ++.++ ++ .++.|++||+.+++....+...+ ...+.+++|+|+|++|++++.+
T Consensus 45 ~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 124 (349)
T 1jmx_B 45 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 124 (349)
T ss_dssp SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCC
Confidence 56788998 55444 44 46899999999998877766443 2337899999999999998865
Q ss_pred CcEEEEECCCCe---eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccc--------------
Q 014934 230 GKVQIWDASRCK---RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGH-------------- 290 (415)
Q Consensus 230 g~V~iwd~~~~~---~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-------------- 290 (415)
+.|.+||+.+++ .+..+. +...+.+++|+ ++ +++++. .|.+||+.+++ ....+..+
T Consensus 125 ~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
T 1jmx_B 125 PRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGK-YTVALPLRNWNRKGYSAPDVLY 199 (349)
T ss_dssp CEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCC-EEEEECSTTCCCTTBCCCBCCC
T ss_pred CeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCc-eeccccccccCCccccCcccee
Confidence 899999998743 334444 33458888898 45 555543 49999998776 23333221
Q ss_pred ------------------------------------------------------cCCeEEEEEeC-CCCEEEEEeCCCcE
Q 014934 291 ------------------------------------------------------KSEVCGLKWSY-DNRELASGGNDNRL 315 (415)
Q Consensus 291 ------------------------------------------------------~~~V~~l~~sp-dg~~lasg~~dg~I 315 (415)
...+.+++|+| ++++|+++ ++.|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v 277 (349)
T 1jmx_B 200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRL 277 (349)
T ss_dssp CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEE
T ss_pred eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeE
Confidence 11456778889 99999988 8899
Q ss_pred EEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC
Q 014934 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG 377 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~ 377 (415)
.+||+.+++.+..+.. ...+.+++|+|+++.++++ + .++.|++||+.+++.+..+...
T Consensus 278 ~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-~--~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 278 AKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLG-G--TFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEE-S--BSSEEEEEETTTTEEEEEEECS
T ss_pred EEEECccCeEEEEEcC-CCCccceEECCCCCEEEEe-c--CCCeEEEEeccccceeeeeecC
Confidence 9999999988777753 3457899999999877774 3 5899999999999988887643
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-16 Score=150.48 Aligned_cols=238 Identities=14% Similarity=0.111 Sum_probs=160.2
Q ss_pred ceeEeecCC-CcEEEEEcC----CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 169 YLNLVDWSS-HNVLAVGLG----NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d----~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
++..++|+| ++.|++..+ ..|++|+..+++...+.. ++......+.|+|||++|+.++.++.|.+||+.+++..
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC-SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec-CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 355678999 777766632 379999999888765543 22222334789999999999999999999999988766
Q ss_pred EEecCCCccEEE---E----------------Eee--CCEEEEE-----eCCCcEEEEECCCCCccEEEeccccCCeEEE
Q 014934 244 RTMEGHRLRVGA---L----------------AWS--SSLLSSG-----SRDKSILQRDIRAQEDFVSKLSGHKSEVCGL 297 (415)
Q Consensus 244 ~~l~~h~~~V~~---l----------------~~~--~~~l~sg-----s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 297 (415)
.....+...... + .|+ ++.++.+ ..+..|++||+.++. ...+..+...+..+
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~~~~~~~~~~~~ 193 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE--LEVIHQDTAWLGHP 193 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC--EEEEEEESSCEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc--EEeeccCCcccccc
Confidence 555544432222 2 222 1222222 356689999998876 23334567789999
Q ss_pred EEeC-CCCEEEEEeCC------CcEEEEECCCCceeEEeccC--CCcEEEEEEcCCCCcEEEEEc--CCCCCeEEEEECC
Q 014934 298 KWSY-DNRELASGGND------NRLFVWNQHSTQPVLKYCEH--TAAVKAIAWSPHLHGLLASGG--GTADRCIRFWNTT 366 (415)
Q Consensus 298 ~~sp-dg~~lasg~~d------g~I~iwd~~~~~~~~~~~~h--~~~V~~l~~sp~~~~llasgg--g~~d~~I~iwd~~ 366 (415)
.|+| +++.|+..+.+ ..|.+||+..++.. .+..+ ...+..++|+|+|+.|++.+. +..++.|++||+.
T Consensus 194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 272 (396)
T 3c5m_A 194 IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE 272 (396)
T ss_dssp EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred eECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC
Confidence 9999 88877776543 46999998766533 33333 235788999999997766543 1112459999999
Q ss_pred CCcEEEEeeCCCCEEEEEECC-CCCeEEEEEe--------------cCCCcEEEEECCCCc
Q 014934 367 TNTHLSCMDTGSQVCNLVWSK-NVNELVSTHG--------------YSQNQIIVWRYPTMS 412 (415)
Q Consensus 367 t~~~~~~~~~~~~V~~l~~s~-~~~~l~s~~g--------------~~dg~I~vw~~~s~~ 412 (415)
+++........ ... +.|++ +|+.++++.+ ..++.|.+||..+.+
T Consensus 273 ~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 273 TLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp TCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred CCCeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 88765433322 233 89999 9998876421 134789999987654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-15 Score=143.42 Aligned_cols=219 Identities=9% Similarity=0.028 Sum_probs=151.1
Q ss_pred CeEEEEE--CCCCCeEEeEec--CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC-CCeeeEEec--CCCccEEEEEee
Q 014934 187 NCVYLWN--ACSSKVTKLCDL--GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS-RCKRVRTME--GHRLRVGALAWS 259 (415)
Q Consensus 187 ~~V~iwd--~~~~~~~~~~~~--~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~-~~~~~~~l~--~h~~~V~~l~~~ 259 (415)
+.|++|+ ..++++..+... .....+..++|+|+|++|++++.+ .|.+||+. +++...... .+ +.+.+++|+
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~s 91 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDAD 91 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTT
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEEC
Confidence 5688765 456766444322 334578899999999999998888 99999997 776544322 11 224456777
Q ss_pred C--C--EEEEEe-------------CCCcEEEEECCCCCccEEEec----cccCCeEEEEEeCCCCEEEEEeC-CCcEEE
Q 014934 260 S--S--LLSSGS-------------RDKSILQRDIRAQEDFVSKLS----GHKSEVCGLKWSYDNRELASGGN-DNRLFV 317 (415)
Q Consensus 260 ~--~--~l~sgs-------------~dg~I~iwd~~~~~~~~~~~~----~h~~~V~~l~~spdg~~lasg~~-dg~I~i 317 (415)
+ + +++++. .+|.+.+|++.........+. .+...+.+++|+|||++|++++. ++.|++
T Consensus 92 pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~ 171 (365)
T 1jof_A 92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWT 171 (365)
T ss_dssp SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEE
Confidence 3 4 244543 689999999974332332222 24567999999999998887764 689999
Q ss_pred EECC-CCcee--EEec--cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC--CCcEE---EEee---CC----C--
Q 014934 318 WNQH-STQPV--LKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT--TNTHL---SCMD---TG----S-- 378 (415)
Q Consensus 318 wd~~-~~~~~--~~~~--~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~--t~~~~---~~~~---~~----~-- 378 (415)
||+. +++.. ..+. .|...+..++|+|+|+.++++.. .++.|.+|++. +|+.. ..+. .+ .
T Consensus 172 ~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~ 249 (365)
T 1jof_A 172 HRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPE 249 (365)
T ss_dssp EEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTT
T ss_pred EEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC--CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccc
Confidence 9998 67543 2333 24667999999999997777664 57899999765 56643 2232 11 2
Q ss_pred -----CEEEEE-ECCCCCeEEEEEecCC----CcEEEEECC
Q 014934 379 -----QVCNLV-WSKNVNELVSTHGYSQ----NQIIVWRYP 409 (415)
Q Consensus 379 -----~V~~l~-~s~~~~~l~s~~g~~d----g~I~vw~~~ 409 (415)
.+..++ |+|+|++|+++....+ +.|.+|++.
T Consensus 250 ~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 250 TGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp TSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred cccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 488899 9999999887533233 289999985
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.6e-15 Score=141.34 Aligned_cols=233 Identities=8% Similarity=-0.033 Sum_probs=156.4
Q ss_pred EeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEE--EcCCCCeEEEEE--------------------
Q 014934 172 LVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVG--WANRNTHLAVGT-------------------- 227 (415)
Q Consensus 172 ~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~--~sp~g~~la~g~-------------------- 227 (415)
.+.|+| ++.|+++. ++.|++||+.+++...+.. .+...+.... ++++|++++...
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ-VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYF 163 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee-chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhc
Confidence 457999 66777764 6799999999999877776 3444454444 489999887432
Q ss_pred --CCCcEEEEECCCCeeeEEecCCCccEEEEEeeC---CEEEEEeCC------CcEEEEECCCCCccEEEecccc--CCe
Q 014934 228 --SHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---SLLSSGSRD------KSILQRDIRAQEDFVSKLSGHK--SEV 294 (415)
Q Consensus 228 --~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~h~--~~V 294 (415)
.++.|.+||+.+++... +..+...+..++|++ ..|+.+..+ ..|.++|..... ...+..+. ..+
T Consensus 164 ~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~ 240 (388)
T 3pe7_A 164 TKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN--MRKVKTHAEGESC 240 (388)
T ss_dssp GCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--CEESCCCCTTEEE
T ss_pred cCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--eEEeeeCCCCccc
Confidence 34679999999886544 444667789999987 456655543 378888887654 34444444 357
Q ss_pred EEEEEeCCCCEEEEEeCC-C----cEEEEECCCCce--eEEeccCCCc---EEEEEEcCCCCcEEEEEc------CCCCC
Q 014934 295 CGLKWSYDNRELASGGND-N----RLFVWNQHSTQP--VLKYCEHTAA---VKAIAWSPHLHGLLASGG------GTADR 358 (415)
Q Consensus 295 ~~l~~spdg~~lasg~~d-g----~I~iwd~~~~~~--~~~~~~h~~~---V~~l~~sp~~~~llasgg------g~~d~ 358 (415)
..+.|+|||+.|+..+.+ + .|++||+.+++. +..+.++... ...++|+|+|+.++++.. +..+.
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 320 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP 320 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence 789999999987664432 2 399999998864 3333321111 112379999997776531 02477
Q ss_pred eEEEEECCCCcEEEEeeCCC-----------CEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 359 CIRFWNTTTNTHLSCMDTGS-----------QVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 359 ~I~iwd~~t~~~~~~~~~~~-----------~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.|++||+.+++......+.. .+..++|+|||+.|+.+ +..++...||.+.
T Consensus 321 ~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~-s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 321 FLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFT-SDVHGKPALYLAT 381 (388)
T ss_dssp EEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE-ECTTSSCEEEEEE
T ss_pred EEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEE-ecCCCceeEEEEE
Confidence 99999999987654444444 47889999999999886 3456766666654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-14 Score=141.03 Aligned_cols=233 Identities=9% Similarity=0.026 Sum_probs=167.6
Q ss_pred EeecCC-CcEEEEEc-----------CCeEEEEECCCCCeEEeEecC-----CCCCeEEEEEcCCCCeEEEEEC--CCcE
Q 014934 172 LVDWSS-HNVLAVGL-----------GNCVYLWNACSSKVTKLCDLG-----IDDSVCSVGWANRNTHLAVGTS--HGKV 232 (415)
Q Consensus 172 ~l~ws~-~~~la~~~-----------d~~V~iwd~~~~~~~~~~~~~-----~~~~V~~v~~sp~g~~la~g~~--dg~V 232 (415)
.+.++| ++.|.++. ++.|.+||..+.+....+... +......++++|+|++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 788999 67777763 457999999998887777643 2345778999999999999874 5789
Q ss_pred EEEECCCCeeeEE-ecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEE------EeccccCCeEEEEEeCC
Q 014934 233 QIWDASRCKRVRT-MEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVS------KLSGHKSEVCGLKWSYD 302 (415)
Q Consensus 233 ~iwd~~~~~~~~~-l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~------~~~~h~~~V~~l~~spd 302 (415)
.+||+.+++.+.. +.. ... ..+.+. +..+++.+.||.+.+|++........ .+..+..++ .+.++++
T Consensus 134 ~v~d~~~~~~~~~~i~~-~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~ 210 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAA-AGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALD 210 (361)
T ss_dssp EEEETTTTEEEEEEGGG-TTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEEC
T ss_pred EEEECCCCcEEEEEecC-CCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEeccc
Confidence 9999999998887 653 222 223333 35788899999999999876333221 112222222 2344678
Q ss_pred CCEEEEEeCCCcEEEEECCCCcee--EEecc------CC----CcEEEEEEcCCCCcEEEEEc--CC------CCCeEEE
Q 014934 303 NRELASGGNDNRLFVWNQHSTQPV--LKYCE------HT----AAVKAIAWSPHLHGLLASGG--GT------ADRCIRF 362 (415)
Q Consensus 303 g~~lasg~~dg~I~iwd~~~~~~~--~~~~~------h~----~~V~~l~~sp~~~~llasgg--g~------~d~~I~i 362 (415)
+..++..+.++.|.++|+...... ..+.. +. .....++|+|+++.++++.. |. ....|.+
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v 290 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV 290 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEE
Confidence 888888889999999999765322 22211 00 11123789999888887653 10 1358999
Q ss_pred EECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 363 wd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
||+.+++.+..+..+. +.+++|+|+|++|+++ .. +.|.+||..++
T Consensus 291 iD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~--n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 291 MDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTL--DG-GNVNVYDISQP 335 (361)
T ss_dssp EETTTTEEEEEEECTT-CCEEEEETTTTEEEEE--CS-SCEEEEECSSS
T ss_pred EECCCCcEEEEEecCC-eeEEEECCCCCEEEEe--CC-CeEEEEECCCC
Confidence 9999999999998777 9999999999999884 34 89999999987
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-14 Score=151.00 Aligned_cols=251 Identities=12% Similarity=0.032 Sum_probs=176.6
Q ss_pred ceeccCCCCCC--CcceeEeecCC-CcEEEEEcC--C----eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE
Q 014934 156 YKILDAPALQD--DFYLNLVDWSS-HNVLAVGLG--N----CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG 226 (415)
Q Consensus 156 ~~~ld~~~l~~--~~~i~~l~ws~-~~~la~~~d--~----~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g 226 (415)
..++|...+.. .+.+..+.||| ++.||.+.+ | .|++||+.+++...... .+ ..+.+++|+|||+.|+.+
T Consensus 111 ~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~-~~~~~~~wspDg~~l~~~ 188 (710)
T 2xdw_A 111 RVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ER-VKFSCMAWTHDGKGMFYN 188 (710)
T ss_dssp EEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EE-ECSCCEEECTTSSEEEEE
T ss_pred EEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cC-cccceEEEEeCCCEEEEE
Confidence 34455443332 24688999999 788887742 2 89999999998776432 22 236789999999999999
Q ss_pred ECCCc----------------EEEEECCCCee--eEEec--CCCccEEEEEee--CCEEEEEeC-----CCcEEEEECCC
Q 014934 227 TSHGK----------------VQIWDASRCKR--VRTME--GHRLRVGALAWS--SSLLSSGSR-----DKSILQRDIRA 279 (415)
Q Consensus 227 ~~dg~----------------V~iwd~~~~~~--~~~l~--~h~~~V~~l~~~--~~~l~sgs~-----dg~I~iwd~~~ 279 (415)
+.++. |.+|++.+++. ...+. .|...+..+.|+ +++|+.++. +..|++||+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred EECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 88766 99999987652 22233 356668889998 467766654 56899999986
Q ss_pred ------CCccEEEeccccCCeEEEEEeCCCCEEEEEeCC----CcEEEEECCCCc--eeEEeccCCC--cEEEEEEcCCC
Q 014934 280 ------QEDFVSKLSGHKSEVCGLKWSYDNRELASGGND----NRLFVWNQHSTQ--PVLKYCEHTA--AVKAIAWSPHL 345 (415)
Q Consensus 280 ------~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d----g~I~iwd~~~~~--~~~~~~~h~~--~V~~l~~sp~~ 345 (415)
+......+..+...+.. .|+|+|+.|+..++. +.|.+||+.++. ....+..|.. .+..++|++++
T Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 269 ESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN 347 (710)
T ss_dssp SSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred cccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC
Confidence 43224555666666654 588999988876654 369999998774 2344545544 68889999655
Q ss_pred CcEEEEEcCCCCC--eEEEEECCCCcEEEEeeC-CCCEEEEEECCCCCeEEEEEe--cCCCcEEEEECCCCc
Q 014934 346 HGLLASGGGTADR--CIRFWNTTTNTHLSCMDT-GSQVCNLVWSKNVNELVSTHG--YSQNQIIVWRYPTMS 412 (415)
Q Consensus 346 ~~llasggg~~d~--~I~iwd~~t~~~~~~~~~-~~~V~~l~~s~~~~~l~s~~g--~~dg~I~vw~~~s~~ 412 (415)
.++++.. .|+ .|.+||+.+|+.+..+.. ...+..+.+++++..++.+.. ...+.|.+||+.+++
T Consensus 348 -~lv~~~~--~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 348 -FLVLCYL--HDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp -EEEEEEE--ETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred -EEEEEEE--ECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4777765 566 467788878887777653 456888999999987775422 235789999998765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-14 Score=130.01 Aligned_cols=237 Identities=11% Similarity=-0.000 Sum_probs=165.2
Q ss_pred cceeEeecCC-CcEEE-E-EcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 168 FYLNLVDWSS-HNVLA-V-GLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la-~-~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
+....+++++ +++++ + ..++.|++|+..+...... .......+.+++++++|+++++.. ++.|.+||...... .
T Consensus 24 ~~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~ 100 (270)
T 1rwi_B 24 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-T 100 (270)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-E
T ss_pred CCccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-e
Confidence 3677888988 66555 4 2468999999866554322 223345788999999999555544 88999999876543 3
Q ss_pred Eec-CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 245 TME-GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 245 ~l~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
.+. .....+.+++++ ++++++...++.|.+||...... ..........+.+++++++|+++++...++.|.+||..
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC-EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee-EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 333 233568899997 45666666788999998665442 22222333467889999999988887778899999988
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-CCCEEEEEECCCCCeEEEEEecCC
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~-~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
..........+...+.++++.++| .++++.. .++.|.+||..+......... ...+.+++++++|+.+++ ...+
T Consensus 180 ~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~--~~~~ 254 (270)
T 1rwi_B 180 SNNQVVLPFTDITAPWGIAVDEAG-TVYVTEH--NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVA--DRGN 254 (270)
T ss_dssp TCCEEECCCSSCCSEEEEEECTTC-CEEEEET--TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEE--EGGG
T ss_pred CCceEeecccCCCCceEEEECCCC-CEEEEEC--CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEE--ECCC
Confidence 765544333344678999999998 4777765 578999999876554332222 357899999999986666 5678
Q ss_pred CcEEEEECCCCcc
Q 014934 401 NQIIVWRYPTMSK 413 (415)
Q Consensus 401 g~I~vw~~~s~~~ 413 (415)
+.|.+++....+.
T Consensus 255 ~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 255 DRVVKLTSLEHHH 267 (270)
T ss_dssp TEEEEECCCGGGS
T ss_pred CEEEEEcCCCccc
Confidence 9999999987554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-15 Score=154.93 Aligned_cols=231 Identities=11% Similarity=-0.021 Sum_probs=162.0
Q ss_pred cceeEeecCCCcEEEEEc----CCeEEEEECC-CCCeEEeEecCCCCCeE---------EEEEc--CCCCe-EEEEEC-C
Q 014934 168 FYLNLVDWSSHNVLAVGL----GNCVYLWNAC-SSKVTKLCDLGIDDSVC---------SVGWA--NRNTH-LAVGTS-H 229 (415)
Q Consensus 168 ~~i~~l~ws~~~~la~~~----d~~V~iwd~~-~~~~~~~~~~~~~~~V~---------~v~~s--p~g~~-la~g~~-d 229 (415)
..+..+.|+++.++.+.. ++...||... +++...+. .+...+. .+.|+ |||++ |+.+.. +
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~ 101 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESAL--PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD 101 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESS--CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeC--CCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence 357788899865554443 5678888843 44443333 4445555 56666 99998 776654 4
Q ss_pred CcEEEEECC--CCeeeEEecC-----CCccEEEEEee--CCEEEEEeCC----------CcEEEEECCC------CCccE
Q 014934 230 GKVQIWDAS--RCKRVRTMEG-----HRLRVGALAWS--SSLLSSGSRD----------KSILQRDIRA------QEDFV 284 (415)
Q Consensus 230 g~V~iwd~~--~~~~~~~l~~-----h~~~V~~l~~~--~~~l~sgs~d----------g~I~iwd~~~------~~~~~ 284 (415)
..|.+|++. .......+.. |...+..++|+ ++.|++++.+ ..|++||+.+ +. .
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~ 179 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA--V 179 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG--S
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc--e
Confidence 556666665 2034555665 67789999999 4688888776 5899999987 43 3
Q ss_pred EEec-cccCCeEEEEEeCCCCEEEEEeCC--------CcEEEEECC-CC---ceeEEeccCCCcEEEEEEcCCCCcEEEE
Q 014934 285 SKLS-GHKSEVCGLKWSYDNRELASGGND--------NRLFVWNQH-ST---QPVLKYCEHTAAVKAIAWSPHLHGLLAS 351 (415)
Q Consensus 285 ~~~~-~h~~~V~~l~~spdg~~lasg~~d--------g~I~iwd~~-~~---~~~~~~~~h~~~V~~l~~sp~~~~llas 351 (415)
..+. .+...+..++|+|||++||.++.+ ..|++||+. ++ +......+|...+..++|+|+|+ ++++
T Consensus 180 ~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~ 258 (662)
T 3azo_A 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVA 258 (662)
T ss_dssp EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEE
T ss_pred eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEE
Confidence 4555 566778889999999999987755 379999998 56 44444445678899999999999 7777
Q ss_pred EcCCCCC--eEEEEECCCCcEEEEeeCCCC---------EEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 352 GGGTADR--CIRFWNTTTNTHLSCMDTGSQ---------VCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 352 ggg~~d~--~I~iwd~~t~~~~~~~~~~~~---------V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
+. .++ .|.+||+.+++.......... +..++|+++++.+++ +.. +.+.||.+
T Consensus 259 ~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~--~~~-~~~~l~~~ 321 (662)
T 3azo_A 259 TD--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV--HGK-GAAVLGIL 321 (662)
T ss_dssp EC--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE--EBS-SSCEEEEE
T ss_pred EC--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE--EEc-CccEEEEE
Confidence 75 567 677778777776544432211 457889999998877 556 88888844
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-14 Score=139.06 Aligned_cols=219 Identities=8% Similarity=0.076 Sum_probs=151.0
Q ss_pred ceeEeecCC-CcEEEEEcC----C--eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC------------
Q 014934 169 YLNLVDWSS-HNVLAVGLG----N--CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH------------ 229 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d----~--~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d------------ 229 (415)
.+..+.||| ++.|++... + .|++|++.+++...+.... . +.++.|+|||+.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~--~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK--N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES--E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC--C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 356789999 677776632 3 4899999988877766532 3 9999999999999888642
Q ss_pred ---------------CcEEEEECCCCeeeEEecCCCccEEEEEeeCC-EEEEEeCCC-------cEEEEECCCCCccEEE
Q 014934 230 ---------------GKVQIWDASRCKRVRTMEGHRLRVGALAWSSS-LLSSGSRDK-------SILQRDIRAQEDFVSK 286 (415)
Q Consensus 230 ---------------g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~-~l~sgs~dg-------~I~iwd~~~~~~~~~~ 286 (415)
..|.+||+.+++.+..+.. . .+..++|+++ +++++..++ ...+|.+.++. ...
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~--~~~ 212 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGK--EEK 212 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTE--EEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCc--eEE
Confidence 5699999998876455544 3 6788899854 666665542 33444444332 334
Q ss_pred eccccCCeEEEEEeCCCCEEEEEeCC--------CcEEEEECCCCceeEEeccCCCcEEE-EEEcCCCCcEEEEEcCCCC
Q 014934 287 LSGHKSEVCGLKWSYDNRELASGGND--------NRLFVWNQHSTQPVLKYCEHTAAVKA-IAWSPHLHGLLASGGGTAD 357 (415)
Q Consensus 287 ~~~h~~~V~~l~~spdg~~lasg~~d--------g~I~iwd~~~~~~~~~~~~h~~~V~~-l~~sp~~~~llasggg~~d 357 (415)
+..+ ..+..+ +|||++|+.++.+ ..|++|| +++.......|...+.. ++|+ ++ ++++++ .+
T Consensus 213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~--~~ 282 (347)
T 2gop_A 213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLF--EE 282 (347)
T ss_dssp EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEE--ET
T ss_pred eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEe--cC
Confidence 4444 555544 9999999887754 3688888 55554444456778886 9999 76 777665 78
Q ss_pred CeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcE-EEEECC
Q 014934 358 RCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQI-IVWRYP 409 (415)
Q Consensus 358 ~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I-~vw~~~ 409 (415)
+.+++| +.+++....+.....|.++.|++ ..+++ +..++.. .||.+.
T Consensus 283 ~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~--~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 283 GSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYL--KETATRLRELFTWD 330 (347)
T ss_dssp TEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEE--EECSSSCCEEEEES
T ss_pred CcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEE--EcCCCChHHheEeC
Confidence 999999 87777655555666789999999 45554 3344443 666654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-13 Score=127.92 Aligned_cols=210 Identities=12% Similarity=0.038 Sum_probs=161.6
Q ss_pred CCCcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCC-CccE
Q 014934 176 SSHNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH-RLRV 253 (415)
Q Consensus 176 s~~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h-~~~V 253 (415)
+|+++|+++. ++.|++||.++++....+..+....+.++.++|+|++|+ +.++.|..||. +++.+..+..+ ...+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 4677888874 789999999999988777643224789999999999888 45778999999 88888888764 3467
Q ss_pred EEEEee--CCEEEEEeC-CCcEEEEECCCCCccEEEec------cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 254 GALAWS--SSLLSSGSR-DKSILQRDIRAQEDFVSKLS------GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 254 ~~l~~~--~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
.++.+. ++++++.+. ++.|..+|. .++ .+..+. .+......+++.++|++|++...++.|.+||.. ++
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk-~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGE-VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSC-EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCC-EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 777766 678888777 777888876 333 333332 222345567889999999999999999999998 99
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC-------CCEEEEEECCCCCeEEEE
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-------SQVCNLVWSKNVNELVST 395 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-------~~V~~l~~s~~~~~l~s~ 395 (415)
.+.++..+ ..+.++...+++. +++++. .++.|..+|..+|+.+..+... ..+..+...++|+.+++.
T Consensus 157 ~~w~~~~~-~~~~~~~~~~~g~-~~v~~~--~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 157 LLNSVKLS-GTPFSSAFLDNGD-CLVACG--DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEEECS-SCCCEEEECTTSC-EEEECB--TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EEEEEECC-CCccceeEcCCCC-EEEEeC--CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 99998654 4556778888887 555554 5778999999999999888621 227889999999988885
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-13 Score=127.47 Aligned_cols=227 Identities=11% Similarity=0.059 Sum_probs=161.6
Q ss_pred ceeEeecCC-Cc-EEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSS-HN-VLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~-~~-~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
....+.|++ ++ +++++ .++.|+.|+..++ . ..+. .+...+.+++++++|+++++...++.|.+||..+++....
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~~~-~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SPEM-HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI 105 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EEEE-SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EEEE-CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE
Confidence 467899999 66 67776 4689999999887 3 4443 4567899999999999877766678999999988765443
Q ss_pred ecCC----CccEEEEEee--CCEEEE----Ee-------------CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC
Q 014934 246 MEGH----RLRVGALAWS--SSLLSS----GS-------------RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD 302 (415)
Q Consensus 246 l~~h----~~~V~~l~~~--~~~l~s----gs-------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 302 (415)
.... ...+..++++ ++++++ |+ ..+.|..+|.. +. ...+..+.....+++|+|+
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~gi~~s~d 182 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRDRVKPNGLAFLPS 182 (296)
T ss_dssp ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECCCSSEEEEEECTT
T ss_pred eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecCCCCCccEEECCC
Confidence 3221 1235567887 466666 32 13456666655 32 4445556677899999999
Q ss_pred CCEEEEEeCCCcEEEEECC-CCce---eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCC
Q 014934 303 NRELASGGNDNRLFVWNQH-STQP---VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS 378 (415)
Q Consensus 303 g~~lasg~~dg~I~iwd~~-~~~~---~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~ 378 (415)
++.|++.+.++.|.+||+. +++. ...+..+...+.++++.++|. ++++. ++.|.+||.. ++.+..+....
T Consensus 183 g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~----~~~v~~~~~~-g~~~~~~~~~~ 256 (296)
T 3e5z_A 183 GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA----GDGVHVLTPD-GDELGRVLTPQ 256 (296)
T ss_dssp SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE----TTEEEEECTT-SCEEEEEECSS
T ss_pred CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc----CCeEEEECCC-CCEEEEEECCC
Confidence 9999777788999999987 4544 233334556677899999997 66654 5789999986 77777776544
Q ss_pred CEEEEEE-CCCCCeEEEEEecCCCcEEEEECCC
Q 014934 379 QVCNLVW-SKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 379 ~V~~l~~-s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
.+.+++| +++++.|+++ .. +.|..++..+
T Consensus 257 ~~~~~~f~~~d~~~L~v~--t~-~~l~~~~~~~ 286 (296)
T 3e5z_A 257 TTSNLCFGGPEGRTLYMT--VS-TEFWSIETNV 286 (296)
T ss_dssp CCCEEEEESTTSCEEEEE--ET-TEEEEEECSC
T ss_pred CceeEEEECCCCCEEEEE--cC-CeEEEEEccc
Confidence 4889999 6899988884 33 3555555554
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.6e-13 Score=125.89 Aligned_cols=219 Identities=9% Similarity=0.084 Sum_probs=154.8
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC----CcEEEEECCCCee
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH----GKVQIWDASRCKR 242 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d----g~V~iwd~~~~~~ 242 (415)
.+..++|++ +++++++ .++.|++||..+++...... .+...+.+++|+++|++++++..+ +.|.+||..+++.
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 124 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee-CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE
Confidence 467899998 6666666 46899999999988766553 456789999999999977776665 6899999987765
Q ss_pred eEEec--CCCccEEEEEee--CCEEEEEeC------CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEE-EEeC
Q 014934 243 VRTME--GHRLRVGALAWS--SSLLSSGSR------DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELA-SGGN 311 (415)
Q Consensus 243 ~~~l~--~h~~~V~~l~~~--~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-sg~~ 311 (415)
...+. .+...+.+++++ +.++++... .+.|..+|..... ...+..+...+.+++|+|+|+.|+ +...
T Consensus 125 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 202 (333)
T 2dg1_A 125 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVTETT 202 (333)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE--EEEeecCCCcccceEECCCCCEEEEEeCC
Confidence 43333 244578999998 345555443 3556666665443 233333445688999999998665 4456
Q ss_pred CCcEEEEECCC-CceeEE--------eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCC----
Q 014934 312 DNRLFVWNQHS-TQPVLK--------YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS---- 378 (415)
Q Consensus 312 dg~I~iwd~~~-~~~~~~--------~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~---- 378 (415)
++.|.+||+.+ +..+.. +.++ ..+..++++++|. ++++.. .++.|.+||. +++.+..+....
T Consensus 203 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~--~~~~v~~~d~-~g~~~~~~~~~~~~~g 277 (333)
T 2dg1_A 203 ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMY--GQGRVLVFNK-RGYPIGQILIPGRDEG 277 (333)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEE--TTTEEEEECT-TSCEEEEEECTTGGGT
T ss_pred CCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC-EEEEEc--CCCEEEEECC-CCCEEEEEEcCCCccc
Confidence 78999999864 333221 1122 4678899999987 666554 4789999998 577777775432
Q ss_pred ---CEEEEEECCCCCeEEEE
Q 014934 379 ---QVCNLVWSKNVNELVST 395 (415)
Q Consensus 379 ---~V~~l~~s~~~~~l~s~ 395 (415)
.+.+++|+++++.|+++
T Consensus 278 ~~~~~~~~~~~~dg~~L~v~ 297 (333)
T 2dg1_A 278 HMLRSTHPQFIPGTNQLIIC 297 (333)
T ss_dssp CSCBCCEEEECTTSCEEEEE
T ss_pred cccCcceEEECCCCCEEEEE
Confidence 58899999998777664
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-13 Score=131.28 Aligned_cols=231 Identities=9% Similarity=-0.033 Sum_probs=169.4
Q ss_pred eeEeecCCCcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCeeeEEec
Q 014934 170 LNLVDWSSHNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 170 i~~l~ws~~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~~~~l~ 247 (415)
...+.+..+.+.++.. ++.|.+||..+++....+. .......++++++|+ +.++. .++.|.+||..+++....+.
T Consensus 46 ~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 46 AQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp EEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred ceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEE
Confidence 3455565666666664 6899999999999877764 346789999999985 55555 78999999999998877665
Q ss_pred CCC-----ccEEEEEeeCCEEEEEe--CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC--------
Q 014934 248 GHR-----LRVGALAWSSSLLSSGS--RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-------- 312 (415)
Q Consensus 248 ~h~-----~~V~~l~~~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d-------- 312 (415)
... .....|++.+..|+++. .++.|.++|+.+.+ ....+.. .....+++++|+|++++++..+
T Consensus 123 ~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~-~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDK-VVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGY 200 (328)
T ss_dssp CTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTE-EEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred cCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCe-EEEEEEc-CCCccceEEcCCCCEEEEECCCccCCcccc
Confidence 332 14556666777776666 48899999999876 3444443 3346788999999987776654
Q ss_pred --CcEEEEECCCCceeEEeccC-CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE--eeC-CCCEEEEEEC
Q 014934 313 --NRLFVWNQHSTQPVLKYCEH-TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC--MDT-GSQVCNLVWS 386 (415)
Q Consensus 313 --g~I~iwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~--~~~-~~~V~~l~~s 386 (415)
+.|.+||..+++....+... ......++|+|+++.++++. +.|.+||+.+++.... +.. .....+++++
T Consensus 201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~-----~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vd 275 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-----NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVN 275 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-----SSEEEEETTCSSCCSSCSBCCCSSCEEEEEEC
T ss_pred CCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-----cEEEEEECCCCceeeeeeecCCCCceEEEEEc
Confidence 78999999998877666432 24689999999998777643 3899999998876421 222 4678999999
Q ss_pred CCCCeEEEEEe----cCCCcEEEEECCCCc
Q 014934 387 KNVNELVSTHG----YSQNQIIVWRYPTMS 412 (415)
Q Consensus 387 ~~~~~l~s~~g----~~dg~I~vw~~~s~~ 412 (415)
|++..|.++ . ..++.|.+|+.. ++
T Consensus 276 p~~g~lyva-~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 276 PNNGEVYVA-DAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp TTTCCEEEE-ECTTSSSEEEEEEECTT-CC
T ss_pred CCCCeEEEE-cccccccCCEEEEECCC-CC
Confidence 955555554 4 457899999987 54
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-14 Score=149.97 Aligned_cols=234 Identities=8% Similarity=-0.024 Sum_probs=158.4
Q ss_pred EeecC--C-CcE-EEEEcC--CeEEEEECC--C-CCeEEeEecC---CCCCeEEEEEcCCCCeEEEEECC----------
Q 014934 172 LVDWS--S-HNV-LAVGLG--NCVYLWNAC--S-SKVTKLCDLG---IDDSVCSVGWANRNTHLAVGTSH---------- 229 (415)
Q Consensus 172 ~l~ws--~-~~~-la~~~d--~~V~iwd~~--~-~~~~~~~~~~---~~~~V~~v~~sp~g~~la~g~~d---------- 229 (415)
...|+ | ++. |+.+.+ ..|++|+.. + ++...+.... +...+.+++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 34455 6 666 777754 578888876 3 5554444322 55678999999999999998876
Q ss_pred CcEEEEECCC------CeeeEEec-CCCccEEEEEee--CCEEEEEeCC--------CcEEEEECC-CCC--ccEEEecc
Q 014934 230 GKVQIWDASR------CKRVRTME-GHRLRVGALAWS--SSLLSSGSRD--------KSILQRDIR-AQE--DFVSKLSG 289 (415)
Q Consensus 230 g~V~iwd~~~------~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~d--------g~I~iwd~~-~~~--~~~~~~~~ 289 (415)
..|.+||+.+ ++ ...+. .+...+..++|+ ++.|+.++.+ ..|++||+. ++. .......+
T Consensus 161 ~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 5799999987 54 44555 666788889998 4678777654 379999998 451 23344445
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCC--cEEEEECCCCceeEEeccCCCc--------EEEEEEcCCCCcEEEEEcCCCCCe
Q 014934 290 HKSEVCGLKWSYDNRELASGGNDN--RLFVWNQHSTQPVLKYCEHTAA--------VKAIAWSPHLHGLLASGGGTADRC 359 (415)
Q Consensus 290 h~~~V~~l~~spdg~~lasg~~dg--~I~iwd~~~~~~~~~~~~h~~~--------V~~l~~sp~~~~llasggg~~d~~ 359 (415)
|...+..+.|+|||+++++++.++ .|++||+.+++.......+... +..++|+|++. +++++. . +.
T Consensus 240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~--~-~~ 315 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHG--K-GA 315 (662)
T ss_dssp TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEB--S-SS
T ss_pred CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE-EEEEEE--c-Cc
Confidence 578899999999999888888888 6778887677654333333222 46788999876 777775 5 88
Q ss_pred EEEE--ECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCC--cEEEEECCCCc
Q 014934 360 IRFW--NTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQN--QIIVWRYPTMS 412 (415)
Q Consensus 360 I~iw--d~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg--~I~vw~~~s~~ 412 (415)
+++| |+.+++ +..+. +...+..+ |++++..++.+.++.+. .|.+|+..+.+
T Consensus 316 ~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 316 AVLGILDPESGE-LVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp CEEEEEETTTTE-EEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred cEEEEEECCCCc-EEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8888 666665 45554 33445555 25566655554455554 45555555543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-13 Score=131.57 Aligned_cols=200 Identities=14% Similarity=0.174 Sum_probs=152.8
Q ss_pred CCeEEEEEcCCCCeEEEEECC------------------------CcEEEEECCCCeeeEEec-CCCccEEEEEee--CC
Q 014934 209 DSVCSVGWANRNTHLAVGTSH------------------------GKVQIWDASRCKRVRTME-GHRLRVGALAWS--SS 261 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~d------------------------g~V~iwd~~~~~~~~~l~-~h~~~V~~l~~~--~~ 261 (415)
+.+.+|+++++|+++++...+ +.|.+||..+++.+..+. ++......++++ ++
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 578999999999988877766 479999999888876664 455678899998 57
Q ss_pred EEEEEeCCCcEEEEECCCCCccEEEe---------ccccCCeEEEEEeC-CCCEEEEEe-CCCcEEEEECCCCceeEEec
Q 014934 262 LLSSGSRDKSILQRDIRAQEDFVSKL---------SGHKSEVCGLKWSY-DNRELASGG-NDNRLFVWNQHSTQPVLKYC 330 (415)
Q Consensus 262 ~l~sgs~dg~I~iwd~~~~~~~~~~~---------~~h~~~V~~l~~sp-dg~~lasg~-~dg~I~iwd~~~~~~~~~~~ 330 (415)
++++...++.|++||.......+..+ .++.....+|+++| ++.++++.+ .++.|++|| .+++.+..+.
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~ 182 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWG 182 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEEC
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEec
Confidence 88888889999999986553234444 24445789999999 888888886 689999999 5677777664
Q ss_pred c----------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee---CCCCEEEEEECC------CCCe
Q 014934 331 E----------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---TGSQVCNLVWSK------NVNE 391 (415)
Q Consensus 331 ~----------h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~---~~~~V~~l~~s~------~~~~ 391 (415)
. +-.....|+++|++..++++.. .++.|++||..+|+.+..+. .+..+..++|+| +++.
T Consensus 183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~--~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~ 260 (329)
T 3fvz_A 183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADR--ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKP 260 (329)
T ss_dssp EECCSSSCCTTEESCEEEEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCC
T ss_pred cCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC--CCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCE
Confidence 2 2234899999999556888876 68999999999999988885 456788999999 3332
Q ss_pred EEEEEecCCCcEEEEECCCCcc
Q 014934 392 LVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+++ ...++.|.+|++.+++.
T Consensus 261 ~v~--~~~~~~v~~~~~~~g~~ 280 (329)
T 3fvz_A 261 YFG--DQEPVQGFVMNFSSGEI 280 (329)
T ss_dssp CTT--CSCCCCEEEEETTTCCE
T ss_pred Eec--cCCCcEEEEEEcCCCeE
Confidence 222 23455899999887653
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-13 Score=131.55 Aligned_cols=216 Identities=12% Similarity=0.170 Sum_probs=146.5
Q ss_pred ceeEeecCCCcEEEEEc----------CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC---C--cEE
Q 014934 169 YLNLVDWSSHNVLAVGL----------GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---G--KVQ 233 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~~----------d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d---g--~V~ 233 (415)
.+..+.+ .+..|+... ++.|++|++.+++...+ ..+.++.|+|||++||.++.+ + .|.
T Consensus 16 ~~~~~~~-dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT-KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI------ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE-ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE------ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE-CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc------ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 4556666 655555531 45799999999886554 468899999999999988754 3 377
Q ss_pred EEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeC---------------------------CCcEEEEECCCCCccE
Q 014934 234 IWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSR---------------------------DKSILQRDIRAQEDFV 284 (415)
Q Consensus 234 iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~---------------------------dg~I~iwd~~~~~~~~ 284 (415)
+||+.+++.......+ . +..++|+ ++.|+.++. ...|++||+.++. .+
T Consensus 89 ~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~-~~ 165 (347)
T 2gop_A 89 VADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE-VI 165 (347)
T ss_dssp EEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE-EE
T ss_pred EEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe-EE
Confidence 8888887765544433 3 9999998 466776653 2569999998775 22
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEeCCC---------cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCC
Q 014934 285 SKLSGHKSEVCGLKWSYDNRELASGGNDN---------RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGT 355 (415)
Q Consensus 285 ~~~~~h~~~V~~l~~spdg~~lasg~~dg---------~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~ 355 (415)
..+.. . .+..+.|+||| +++++..++ .|+++| +++ ...+..+ ..+..+ +|+|+.+++.+...
T Consensus 166 ~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~ 236 (347)
T 2gop_A 166 EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPE 236 (347)
T ss_dssp EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCS
T ss_pred eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccc
Confidence 33433 3 78899999999 777776542 455556 444 3444444 555544 99999777665311
Q ss_pred -----CCCeEEEEECCCCcEEEEeeC-CCCEEE-EEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 356 -----ADRCIRFWNTTTNTHLSCMDT-GSQVCN-LVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 356 -----~d~~I~iwd~~t~~~~~~~~~-~~~V~~-l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
....|.+|| +++....... ...+.. +.|+ ++ .+++ +..++.++|| +.+
T Consensus 237 ~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~--~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 237 KKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFT--LFEEGSVNLY-IWD 291 (347)
T ss_dssp SSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEE--EEETTEEEEE-EES
T ss_pred cCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEE--EecCCcEEEE-EcC
Confidence 135788888 6655443332 456776 8999 88 6665 5678899999 864
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-13 Score=130.39 Aligned_cols=230 Identities=8% Similarity=0.024 Sum_probs=161.1
Q ss_pred eeEeecCC-Cc-EEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 170 LNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 170 i~~l~ws~-~~-~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
++++.|++ .. ++..+.++.+..|. ++....+. .+...+.+++|+++|++++++..++.|.+||..+++......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~ 83 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTIT---AEPWLEIS-KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV 83 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEE-SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred cceeeecCCccceeEEeecccCcccc---cceeEEEe-ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence 56677777 22 23334567788882 33333333 455678999999999988888889999999998877655444
Q ss_pred CCCccEEEEEee--CCEEEEEeCC----CcEEEEECCCCCccEEEec--cccCCeEEEEEeCCCCEEEEEeC------CC
Q 014934 248 GHRLRVGALAWS--SSLLSSGSRD----KSILQRDIRAQEDFVSKLS--GHKSEVCGLKWSYDNRELASGGN------DN 313 (415)
Q Consensus 248 ~h~~~V~~l~~~--~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~lasg~~------dg 313 (415)
.+...+.+++++ ++++++...+ +.|.+||..... ....+. .+...+.+++++|+|+++++... .+
T Consensus 84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 566789999998 4566666555 689999988765 222222 34457999999999998887654 35
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC-CcEEEEe------e--CCCCEEEEE
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-NTHLSCM------D--TGSQVCNLV 384 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t-~~~~~~~------~--~~~~V~~l~ 384 (415)
.|..||..+++... +..+...+..++|+|+++.++++.. .++.|.+||+.+ +..+..+ . ....+..++
T Consensus 163 ~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 239 (333)
T 2dg1_A 163 GVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCC 239 (333)
T ss_dssp EEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEE
T ss_pred eEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC--CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceE
Confidence 67777776554433 3334456889999999987777665 578999999964 4332211 1 123678899
Q ss_pred ECCCCCeEEEEEecCCCcEEEEECC
Q 014934 385 WSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 385 ~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
++++|+.+++ ...++.|.+|+..
T Consensus 240 ~d~~G~l~v~--~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 240 IDSDDNLYVA--MYGQGRVLVFNKR 262 (333)
T ss_dssp EBTTCCEEEE--EETTTEEEEECTT
T ss_pred ECCCCCEEEE--EcCCCEEEEECCC
Confidence 9999998777 3457899999874
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-14 Score=150.94 Aligned_cols=220 Identities=10% Similarity=0.076 Sum_probs=151.1
Q ss_pred EeecCC-CcEEEEEcC----------CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC
Q 014934 172 LVDWSS-HNVLAVGLG----------NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 172 ~l~ws~-~~~la~~~d----------~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~ 240 (415)
.+.||| ++.|+.+.+ +.+++||+.+++...+. .+...+..++|||||+.||.+. ++.|.+||+.++
T Consensus 66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~--~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~ 142 (740)
T 4a5s_A 66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE--RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL 142 (740)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS--CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcc--cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC
Confidence 478999 777777765 67889999999876543 5567899999999999999884 679999999887
Q ss_pred eeeEEe-cCCCccE-----------------EEEEee--CCEEEEEeCCC------------------------------
Q 014934 241 KRVRTM-EGHRLRV-----------------GALAWS--SSLLSSGSRDK------------------------------ 270 (415)
Q Consensus 241 ~~~~~l-~~h~~~V-----------------~~l~~~--~~~l~sgs~dg------------------------------ 270 (415)
+..+.. .++...+ ..+.|+ ++.|+.++.|.
T Consensus 143 ~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG 222 (740)
T ss_dssp CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence 654422 2333323 247888 46777765322
Q ss_pred ------cEEEEECCC---CCc-cEEEec------cccCCeEEEEEeCCCCEEEEEeC----CCcEEEEECCCCc----e-
Q 014934 271 ------SILQRDIRA---QED-FVSKLS------GHKSEVCGLKWSYDNRELASGGN----DNRLFVWNQHSTQ----P- 325 (415)
Q Consensus 271 ------~I~iwd~~~---~~~-~~~~~~------~h~~~V~~l~~spdg~~lasg~~----dg~I~iwd~~~~~----~- 325 (415)
.|++||+.+ +.. ....+. +|...+..++|+|||+.++.... +..|.+||+.+++ +
T Consensus 223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 488899987 621 123333 37778999999999997766532 3479999998887 1
Q ss_pred -eEEe--ccCCCcEE-----EEEEcCCCCcEE-EEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 326 -VLKY--CEHTAAVK-----AIAWSPHLHGLL-ASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 326 -~~~~--~~h~~~V~-----~l~~sp~~~~ll-asggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
+..+ +.|...|. .++|+|+|+.++ ..+.......|++||+.+++..........|..+.+ ++++.|+.+
T Consensus 303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~ 380 (740)
T 4a5s_A 303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYI 380 (740)
T ss_dssp GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEE
T ss_pred EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEE
Confidence 1222 35665554 789999998766 443211235799999988876655445556766543 346666654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-14 Score=137.15 Aligned_cols=233 Identities=9% Similarity=-0.012 Sum_probs=153.5
Q ss_pred EeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEE-------------------EEEcCCCCeEEEE----
Q 014934 172 LVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCS-------------------VGWANRNTHLAVG---- 226 (415)
Q Consensus 172 ~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~-------------------v~~sp~g~~la~g---- 226 (415)
.+.|+| ++.|+.. .++.|++|++.+++...+... +...... +.|+|+++.++++
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTV-DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEec-ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 367999 6667655 567899999999988777653 3332222 3567888776654
Q ss_pred -ECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC---CEEEEEeCC------CcEEEEECCCCCccEEEeccc--cCCe
Q 014934 227 -TSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---SLLSSGSRD------KSILQRDIRAQEDFVSKLSGH--KSEV 294 (415)
Q Consensus 227 -~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~h--~~~V 294 (415)
..++.|.+||+.+++..... .+...+..+.|++ ..|+..+.+ ..|.+||+.... ...+..+ ...+
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~ 240 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESC 240 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEE
T ss_pred CCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccc
Confidence 35668999999887765444 4667789999986 345555443 468899987654 2333333 2357
Q ss_pred EEEEEeCCCCEEEEEeCC-----CcEEEEECCCCceeEEeccCCCcEEEEEEcC-CCCcEEEEEcC-------------C
Q 014934 295 CGLKWSYDNRELASGGND-----NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP-HLHGLLASGGG-------------T 355 (415)
Q Consensus 295 ~~l~~spdg~~lasg~~d-----g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~llasggg-------------~ 355 (415)
..++|+|||++|+.++.+ +.|++||+.+++..... ... ... ++|+| +++.++++++. .
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~ 317 (396)
T 3c5m_A 241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-VMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE 317 (396)
T ss_dssp EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-ECC-SEE-EEEECSSSSEEEEEECCC----------CCC
T ss_pred cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-eCC-CCC-CCccCCCCceEEEecCCcceeeccccccccC
Confidence 889999999988877544 44999999888654332 222 233 89999 99844443210 1
Q ss_pred CCCeEEEEECCCCcEEEEeeCCC-----------CEEEEEECCCCCeEEEEEecCCCc--EEEEECCCCc
Q 014934 356 ADRCIRFWNTTTNTHLSCMDTGS-----------QVCNLVWSKNVNELVSTHGYSQNQ--IIVWRYPTMS 412 (415)
Q Consensus 356 ~d~~I~iwd~~t~~~~~~~~~~~-----------~V~~l~~s~~~~~l~s~~g~~dg~--I~vw~~~s~~ 412 (415)
.+..|++||+.+++......+.. .+..+.|+|+|+.|+.++ ..++. |.++++.+.+
T Consensus 318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s-~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 318 NDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTS-DFEGVPAIYIADVPESY 386 (396)
T ss_dssp CCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE-CTTSSCEEEEEECCTTC
T ss_pred CCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEe-cCCCCceEEEEEEcccc
Confidence 24789999999887544333333 256789999999988763 34454 4445555543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-12 Score=121.60 Aligned_cols=238 Identities=7% Similarity=-0.054 Sum_probs=167.3
Q ss_pred EeecCC-CcEEEEEc-----------CCeEEEEECCCCCeEEeEecC-C-----CCCeEEEEEcCCCCeEEEEEC--CCc
Q 014934 172 LVDWSS-HNVLAVGL-----------GNCVYLWNACSSKVTKLCDLG-I-----DDSVCSVGWANRNTHLAVGTS--HGK 231 (415)
Q Consensus 172 ~l~ws~-~~~la~~~-----------d~~V~iwd~~~~~~~~~~~~~-~-----~~~V~~v~~sp~g~~la~g~~--dg~ 231 (415)
.+.++| ++.|.++. ++.|.+||..+.+....+.++ . ......+.|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 678888 67777763 467999999998887776543 1 134568999999999999874 478
Q ss_pred EEEEECCCCeeeEE-ecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEec-----cccCC-eEEEEEeCCCC
Q 014934 232 VQIWDASRCKRVRT-MEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS-----GHKSE-VCGLKWSYDNR 304 (415)
Q Consensus 232 V~iwd~~~~~~~~~-l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----~h~~~-V~~l~~spdg~ 304 (415)
|.++| .+++.+.. +.. ...+....+.+..+++.+.||.+.++|. .+.. ..... ....+ .....+.+++.
T Consensus 150 v~viD-~t~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~ 225 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSS-PTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA-AGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred EEEEE-CCCCEEeEEcCC-CceEEEEeCCCceEEEEcCCCCEEEEEC-CCcE-EEEEeccccccCCcceeecceeEecCC
Confidence 99999 99988877 653 2223333334567778889999999999 6653 22111 11112 12345667666
Q ss_pred EEEEEeCCCcEEEEECCCCc--eeEEecc----------CCCcEEEEEEcCCCCcEEEEEcCC-------CCCeEEEEEC
Q 014934 305 ELASGGNDNRLFVWNQHSTQ--PVLKYCE----------HTAAVKAIAWSPHLHGLLASGGGT-------ADRCIRFWNT 365 (415)
Q Consensus 305 ~lasg~~dg~I~iwd~~~~~--~~~~~~~----------h~~~V~~l~~sp~~~~llasggg~-------~d~~I~iwd~ 365 (415)
.++..+..+.+.+.|+.+.. .+..+.- .......++++|+++.++++.... ..+.|.++|+
T Consensus 226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~ 305 (373)
T 2mad_H 226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence 65555578899999997653 2222211 112244578999998888865310 1368999999
Q ss_pred CCCcEEEEeeCCCCEEEEEECCCCC-eEEEEEecCCCcEEEEECCCCccc
Q 014934 366 TTNTHLSCMDTGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 366 ~t~~~~~~~~~~~~V~~l~~s~~~~-~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
.+++.+..+..+....++.|++||+ .++++ ...++.|.+||..+++.+
T Consensus 306 ~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~-~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 306 LVGQTSSQISLGHDVDAISVAQDGGPDLYAL-SAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CCCEEEEEEECCCCcCeEEECCCCCeEEEEE-cCCCCeEEEEECCCCCEE
Confidence 9999999998888899999999999 56663 335889999999988753
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-12 Score=120.46 Aligned_cols=233 Identities=9% Similarity=0.053 Sum_probs=160.8
Q ss_pred ceeEeecCC-CcEEEE--------EcCCeEEEEECCCCCeEEeEe---cCCCCCeEEEEEcCC-CCeEEEEECCCcEEEE
Q 014934 169 YLNLVDWSS-HNVLAV--------GLGNCVYLWNACSSKVTKLCD---LGIDDSVCSVGWANR-NTHLAVGTSHGKVQIW 235 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~--------~~d~~V~iwd~~~~~~~~~~~---~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iw 235 (415)
....++|++ ++++++ ..++.|++|+..+++...... .++...+.+++++++ |++++ ++..+.|.+|
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~~~ 97 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCEEEE
Confidence 356888988 666666 457899999988888754432 013467999999999 66444 4545579999
Q ss_pred ECCCCeeeEE-ecC----CCccEEEEEee--CCEEEEEeCC---------------CcEEEEECCCCCccEEEeccccCC
Q 014934 236 DASRCKRVRT-MEG----HRLRVGALAWS--SSLLSSGSRD---------------KSILQRDIRAQEDFVSKLSGHKSE 293 (415)
Q Consensus 236 d~~~~~~~~~-l~~----h~~~V~~l~~~--~~~l~sgs~d---------------g~I~iwd~~~~~~~~~~~~~h~~~ 293 (415)
|.. ++.... ... ....+.+++++ ++++++...+ +.|..+|.. +. ...+..+...
T Consensus 98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~ 173 (314)
T 1pjx_A 98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQVDTAFQF 173 (314)
T ss_dssp ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEEEEEEESS
T ss_pred eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEEeccCCCC
Confidence 988 654332 221 12357888887 4555555444 567777765 33 2333334456
Q ss_pred eEEEEEe----CCCCEEEEE-eCCCcEEEEECC-CCc-----eeEEeccCC-CcEEEEEEcCCCCcEEEEEcCCCCCeEE
Q 014934 294 VCGLKWS----YDNRELASG-GNDNRLFVWNQH-STQ-----PVLKYCEHT-AAVKAIAWSPHLHGLLASGGGTADRCIR 361 (415)
Q Consensus 294 V~~l~~s----pdg~~lasg-~~dg~I~iwd~~-~~~-----~~~~~~~h~-~~V~~l~~sp~~~~llasggg~~d~~I~ 361 (415)
..+++|+ |+++.|..+ ..++.|.+||.. +++ ....+..+. ..+..++++++|. ++++.. .++.|.
T Consensus 174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~--~~~~i~ 250 (314)
T 1pjx_A 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANW--GSSHIE 250 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEE--TTTEEE
T ss_pred cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEc--CCCEEE
Confidence 7899999 999765554 567899999986 443 223333444 6688999999986 666554 478999
Q ss_pred EEECCCCcEEEEeeCC-CCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 362 FWNTTTNTHLSCMDTG-SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 362 iwd~~t~~~~~~~~~~-~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+||..+++.+..+... ..+.+++|+++++.|.++ ...++.|..|+...
T Consensus 251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~-~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT-EHENNAVWKFEWQR 299 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE-ETTTTEEEEEECSS
T ss_pred EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEE-eCCCCeEEEEeCCC
Confidence 9999888777666543 679999999999966654 44567999999764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-12 Score=120.03 Aligned_cols=193 Identities=14% Similarity=0.167 Sum_probs=145.7
Q ss_pred CCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec------CCCccEEEEEee--CCEEEEEeC--CCcEEEEE
Q 014934 207 IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME------GHRLRVGALAWS--SSLLSSGSR--DKSILQRD 276 (415)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~------~h~~~V~~l~~~--~~~l~sgs~--dg~I~iwd 276 (415)
+-..+.+++++++|+++++...++.|.+||.. ++.+..+. ++...+.++++. ...|+++.. ++.|.+||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 34578999999999988887889999999987 56666553 244678899994 345555553 88999999
Q ss_pred CCCCCccEEEec-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec--cCCCcEEEEEEcCCCCcEEEEEc
Q 014934 277 IRAQEDFVSKLS-GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 277 ~~~~~~~~~~~~-~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~llasgg 353 (415)
. .+. .+..+. .+...+.+++++|+|+++++...++.|.+||.. ++.+..+. .+...+.+++++|++. ++++..
T Consensus 107 ~-~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~ 182 (286)
T 1q7f_A 107 Q-YGQ-FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDN 182 (286)
T ss_dssp T-TSC-EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-EEEEEG
T ss_pred C-CCc-EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC-EEEEEC
Confidence 4 444 344443 344678999999999988888888999999964 55565553 3456789999999987 777765
Q ss_pred CCCCCeEEEEECCCCcEEEEeeCC---CCEEEEEECCCCCeEEEEEecCCC-cEEEEECC
Q 014934 354 GTADRCIRFWNTTTNTHLSCMDTG---SQVCNLVWSKNVNELVSTHGYSQN-QIIVWRYP 409 (415)
Q Consensus 354 g~~d~~I~iwd~~t~~~~~~~~~~---~~V~~l~~s~~~~~l~s~~g~~dg-~I~vw~~~ 409 (415)
.++.|++||. +++.+..+... ..+..++++++|+.+++ ...++ .|.+|+..
T Consensus 183 --~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~--~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 183 --RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIA--DNHNNFNLTIFTQD 237 (286)
T ss_dssp --GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEE--ECSSSCEEEEECTT
T ss_pred --CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEE--eCCCCEEEEEECCC
Confidence 5899999997 56666666533 56899999999988777 44565 99999953
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-11 Score=113.44 Aligned_cols=230 Identities=10% Similarity=-0.075 Sum_probs=165.6
Q ss_pred cceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee-E
Q 014934 168 FYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV-R 244 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~-~ 244 (415)
..+.++.+++ ++++++.. ++.|.+|+.. ++............+.++++.++|.++++...++.|..||.. ++.. .
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~ 92 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEY 92 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEE
Confidence 3578888888 66666665 6899999988 665544322345789999999999977776668889999986 3322 2
Q ss_pred EecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 245 TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
.+......+.++++. +.++++...++.|..||. .+.........+...+.+++++++|+++++...++.|.+||. +
T Consensus 93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~ 170 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S 170 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C
Confidence 222345578889987 456666666889999998 443222222334567899999999988888777889999999 6
Q ss_pred CceeEE-eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee---CCCCEEEEEECCCCCeEEEEEec
Q 014934 323 TQPVLK-YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---TGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 323 ~~~~~~-~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~---~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
++.... +..+...+.++++.+++. ++++.. .++.|.+||. +++... +. ....+.+++++++|+.+++ ..
T Consensus 171 g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~--~~ 243 (299)
T 2z2n_A 171 GDITEFKIPTPASGPVGITKGNDDA-LWFVEI--IGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFT--EW 243 (299)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEE--ET
T ss_pred CcEEEeeCCCCCCcceeEEECCCCC-EEEEcc--CCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEe--cc
Confidence 655432 333456788999999987 666654 5789999999 776443 32 3367899999999986666 44
Q ss_pred CCCcEEEEEC
Q 014934 399 SQNQIIVWRY 408 (415)
Q Consensus 399 ~dg~I~vw~~ 408 (415)
.++.|.+|+.
T Consensus 244 ~~~~i~~~d~ 253 (299)
T 2z2n_A 244 GANKIGRLTS 253 (299)
T ss_dssp TTTEEEEEET
T ss_pred CCceEEEECC
Confidence 6788999986
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-14 Score=137.43 Aligned_cols=173 Identities=14% Similarity=0.082 Sum_probs=136.2
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCC---------eEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSK---------VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~---------~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~ 238 (415)
.++++++++ ..++++|....+.+|++.+.+ ........+.. |+.|+| ++++|+++ .+|.|++||+.
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence 488999999 788888888899999865432 11111223456 999999 99999999 88999999998
Q ss_pred CCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 014934 239 RCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 239 ~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iw 318 (415)
+.........|...+.++.+.+..+++++.||.|.+||+..... .. +...|++++|||+| ++.|..||.+++|
T Consensus 115 sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~ 187 (388)
T 1xip_A 115 ELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSF 187 (388)
T ss_dssp STTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECSSE--EEEEETTSCEEEE
T ss_pred hhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcCCc--eEEEEcCCcEEEE
Confidence 76666666677788999888765699999999999999987762 22 45689999999999 7889999999999
Q ss_pred ECCCCce--eEEe------c---cCCCcEEEEEEcCCCCcEEEEE
Q 014934 319 NQHSTQP--VLKY------C---EHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 319 d~~~~~~--~~~~------~---~h~~~V~~l~~sp~~~~llasg 352 (415)
+...+.. ..++ . +|...|.+|.|.+++.++++-+
T Consensus 188 ~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 188 AWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9877764 4555 3 3788999999999887555433
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-13 Score=141.57 Aligned_cols=250 Identities=10% Similarity=0.002 Sum_probs=167.2
Q ss_pred CceeccCCCCC--CCcceeEeecCC-CcEEEEEc--C----CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEE
Q 014934 155 PYKILDAPALQ--DDFYLNLVDWSS-HNVLAVGL--G----NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV 225 (415)
Q Consensus 155 p~~~ld~~~l~--~~~~i~~l~ws~-~~~la~~~--d----~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~ 225 (415)
+..++|...+. ..+.+..++||| ++.||.+. + ..|++||+.+++......+.. ....+++|+|||+.|+.
T Consensus 106 ~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~-~~~~~~~wspDg~~l~~ 184 (695)
T 2bkl_A 106 EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG-GKYATPKWTPDSKGFYY 184 (695)
T ss_dssp CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC-CTTCCCEECTTSSEEEE
T ss_pred cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc-ccccceEEecCCCEEEE
Confidence 44555544332 235688999999 78888653 2 479999999998641111111 11268999999999999
Q ss_pred EECCCc-------------EEEEECCCCe----eeEEecCCCccEEEEEee--CCEEEEEeCCC----cEEEEECCCCCc
Q 014934 226 GTSHGK-------------VQIWDASRCK----RVRTMEGHRLRVGALAWS--SSLLSSGSRDK----SILQRDIRAQED 282 (415)
Q Consensus 226 g~~dg~-------------V~iwd~~~~~----~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg----~I~iwd~~~~~~ 282 (415)
++.+.. |.+|++.++. .+.....|...+..+.|+ +++|+.++.++ .|++||...+.
T Consensus 185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~- 263 (695)
T 2bkl_A 185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD- 263 (695)
T ss_dssp EECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-
T ss_pred EEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-
Confidence 988776 9999998765 333333456678899998 46677666555 67777665443
Q ss_pred cEEEeccccCCeEEEEEeCCCCEEEEEe---CCCcEEEEECCCCce--eEEeccC--CCcEEEEEEcCCCCcEEEEEcCC
Q 014934 283 FVSKLSGHKSEVCGLKWSYDNRELASGG---NDNRLFVWNQHSTQP--VLKYCEH--TAAVKAIAWSPHLHGLLASGGGT 355 (415)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spdg~~lasg~---~dg~I~iwd~~~~~~--~~~~~~h--~~~V~~l~~sp~~~~llasggg~ 355 (415)
...+..+...+....| ++|.+++... .++.|.+||+.++.. ...+..| ...+..++|+ + ..++++..
T Consensus 264 -~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~-~~lv~~~~-- 337 (695)
T 2bkl_A 264 -FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G-GHLSLEYL-- 337 (695)
T ss_dssp -CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T-TEEEEEEE--
T ss_pred -eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C-CEEEEEEE--
Confidence 3445555556666667 5666444443 257899999987753 2333333 4567888888 3 45777776
Q ss_pred CCCeEEEEECC-CCcEEEEeeC--CCCEEEEEECCCCCeEEEEEe--cCCCcEEEEECCCCc
Q 014934 356 ADRCIRFWNTT-TNTHLSCMDT--GSQVCNLVWSKNVNELVSTHG--YSQNQIIVWRYPTMS 412 (415)
Q Consensus 356 ~d~~I~iwd~~-t~~~~~~~~~--~~~V~~l~~s~~~~~l~s~~g--~~dg~I~vw~~~s~~ 412 (415)
.|+..++|.+. +++.+..+.. ...|..+.+++++..++.+.. ...+.|++||+.+++
T Consensus 338 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 338 KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 78887777654 4666666543 455778899999988875422 234689999998764
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.9e-13 Score=139.40 Aligned_cols=250 Identities=10% Similarity=-0.022 Sum_probs=167.0
Q ss_pred CceeccCCCCCCC--cceeEeecCC-CcEEEEEcC------CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEE
Q 014934 155 PYKILDAPALQDD--FYLNLVDWSS-HNVLAVGLG------NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV 225 (415)
Q Consensus 155 p~~~ld~~~l~~~--~~i~~l~ws~-~~~la~~~d------~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~ 225 (415)
+..++|...+..+ +.+..+.||| ++.||.+.+ ..|++||+.+++...... +...+..++|+|| +.|+.
T Consensus 148 ~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~ 224 (741)
T 1yr2_A 148 GRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLY 224 (741)
T ss_dssp CEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEE
T ss_pred CEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEE
Confidence 3445554443332 4788999999 788887743 269999999998765421 1122357899999 99999
Q ss_pred EECCCc--------------EEEEECCCCee--eEEec--CCCccEEEEEee--CCEEEEEeCCC-----cEEEEECCCC
Q 014934 226 GTSHGK--------------VQIWDASRCKR--VRTME--GHRLRVGALAWS--SSLLSSGSRDK-----SILQRDIRAQ 280 (415)
Q Consensus 226 g~~dg~--------------V~iwd~~~~~~--~~~l~--~h~~~V~~l~~~--~~~l~sgs~dg-----~I~iwd~~~~ 280 (415)
+..++. |.+|++.++.. ...+. .+...+..+.|+ +++|+..+.++ .|++||+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp EECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred EEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 887654 88999977642 22333 344458889998 46677666443 7999999876
Q ss_pred Ccc-EEEeccccCCeEEEEEeCCCCEEEEEeCC----CcEEEEECCCC--ceeEEeccCCCcEEEEEEcCCCCcEEEEEc
Q 014934 281 EDF-VSKLSGHKSEVCGLKWSYDNRELASGGND----NRLFVWNQHST--QPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 281 ~~~-~~~~~~h~~~V~~l~~spdg~~lasg~~d----g~I~iwd~~~~--~~~~~~~~h~~~V~~l~~sp~~~~llasgg 353 (415)
... ...+..+...+... ++|+|+.|+..+++ +.|.+||+.++ .....+..+...+..++|. +..++++..
T Consensus 305 ~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~ 381 (741)
T 1yr2_A 305 KIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYI 381 (741)
T ss_dssp EECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEE
T ss_pred CCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEE
Confidence 322 34455555555555 35899998887764 45999999874 3333344455556677887 445777776
Q ss_pred CCCCCeEEEEECC-CCcEEEEee--CCCCEEEEEECCCCCeEEEEEe--cCCCcEEEEECCCCc
Q 014934 354 GTADRCIRFWNTT-TNTHLSCMD--TGSQVCNLVWSKNVNELVSTHG--YSQNQIIVWRYPTMS 412 (415)
Q Consensus 354 g~~d~~I~iwd~~-t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g--~~dg~I~vw~~~s~~ 412 (415)
.|+..++|.+. +++.+..+. ....|..+.++++++.|+.+.. ...+.|++||+.+++
T Consensus 382 --~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 382 --HDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp --ETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred --ECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 67777666543 466666665 3456888999999987775322 234789999987754
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-12 Score=136.12 Aligned_cols=221 Identities=8% Similarity=0.041 Sum_probs=150.3
Q ss_pred eEEEEECCCCCeEEeEec-----CCCCCeEEEEEcCCCCeEEEEECCC-----cEEEEECCCCeeeEEecCCCccEEEEE
Q 014934 188 CVYLWNACSSKVTKLCDL-----GIDDSVCSVGWANRNTHLAVGTSHG-----KVQIWDASRCKRVRTMEGHRLRVGALA 257 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~-----~~~~~V~~v~~sp~g~~la~g~~dg-----~V~iwd~~~~~~~~~l~~h~~~V~~l~ 257 (415)
.+++.+..+++...++.. ++...+.+++|||||++||.+..++ .|++||+.+++.+.....+ ..+..++
T Consensus 99 ~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~ 177 (710)
T 2xdw_A 99 VLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMA 177 (710)
T ss_dssp EEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEE
T ss_pred EEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEE
Confidence 455555555554444322 2333588999999999999887644 8999999999876543222 2256789
Q ss_pred ee--CCEEEEEeCCCc----------------EEEEECCCCCcc-EEEec--cccCCeEEEEEeCCCCEEEEEeC-----
Q 014934 258 WS--SSLLSSGSRDKS----------------ILQRDIRAQEDF-VSKLS--GHKSEVCGLKWSYDNRELASGGN----- 311 (415)
Q Consensus 258 ~~--~~~l~sgs~dg~----------------I~iwd~~~~~~~-~~~~~--~h~~~V~~l~~spdg~~lasg~~----- 311 (415)
|+ ++.|+.++.++. |++|++.++... ...+. .|...+.++.|+|||++|+.++.
T Consensus 178 wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 257 (710)
T 2xdw_A 178 WTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP 257 (710)
T ss_dssp ECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS
T ss_pred EEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCC
Confidence 98 468888887766 999999876522 22222 34556889999999999988764
Q ss_pred CCcEEEEECCC------Cc-eeEEeccCCCcEEEEEEcCCCCcEEEEEcC-CCCCeEEEEECCCCcE---EEEeeCCC--
Q 014934 312 DNRLFVWNQHS------TQ-PVLKYCEHTAAVKAIAWSPHLHGLLASGGG-TADRCIRFWNTTTNTH---LSCMDTGS-- 378 (415)
Q Consensus 312 dg~I~iwd~~~------~~-~~~~~~~h~~~V~~l~~sp~~~~llasggg-~~d~~I~iwd~~t~~~---~~~~~~~~-- 378 (415)
+..|++||+.+ +. ....+..+...+.. .|+|+|..+++.+.. .....|.+||+.++.. ...+.+..
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD 336 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence 67899999986 43 45666677766655 488998877776641 1245799999988742 22233333
Q ss_pred CEEEEEECCCCCeEEEEEecCCC--cEEEEECCCCc
Q 014934 379 QVCNLVWSKNVNELVSTHGYSQN--QIIVWRYPTMS 412 (415)
Q Consensus 379 ~V~~l~~s~~~~~l~s~~g~~dg--~I~vw~~~s~~ 412 (415)
.+..+.|++++..+++ ...++ .|.+|++.+++
T Consensus 337 ~~~~~~~~~~~~lv~~--~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 337 VLEWVACVRSNFLVLC--YLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp EEEEEEEETTTEEEEE--EEETTEEEEEEEETTTCC
T ss_pred eEEEEEEEcCCEEEEE--EEECCEEEEEEEECCCCC
Confidence 5778999966665555 44566 46667765544
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-11 Score=122.25 Aligned_cols=226 Identities=12% Similarity=0.077 Sum_probs=164.9
Q ss_pred CcEEEEE--cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC--CCeeeEEecCCCccE
Q 014934 178 HNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS--RCKRVRTMEGHRLRV 253 (415)
Q Consensus 178 ~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~--~~~~~~~l~~h~~~V 253 (415)
++.+++. .++.|.++|..++++...+..+ ..+..+.|+|||+++++++.+|.|.+||+. +.+.+..+.... ..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P 242 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EA 242 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CC
Confidence 3444444 4689999999999988877643 467899999999999999999999999995 778887776543 35
Q ss_pred EEEEee------CCEEEEEe-CCCcEEEEECCCCCccEEEecc----------c-cCCeEEEEEeCCCCEEE-EEeCCCc
Q 014934 254 GALAWS------SSLLSSGS-RDKSILQRDIRAQEDFVSKLSG----------H-KSEVCGLKWSYDNRELA-SGGNDNR 314 (415)
Q Consensus 254 ~~l~~~------~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~----------h-~~~V~~l~~spdg~~la-sg~~dg~ 314 (415)
..++++ +++++++. .+++|.++|..+.+ .+..+.. | ...+..+..++++..++ ....+|.
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 678887 35666554 56899999998876 3444331 2 12578899998866554 4556799
Q ss_pred EEEEECCCCcee--EEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-CCCE---EEEE-ECC
Q 014934 315 LFVWNQHSTQPV--LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQV---CNLV-WSK 387 (415)
Q Consensus 315 I~iwd~~~~~~~--~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~-~~~V---~~l~-~s~ 387 (415)
|.++|..+.+.+ ..+ ........+.|+|++++++++.. .++.|.++|+.+++.+..+.. +... ..+. ++|
T Consensus 322 v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~--~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p 398 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP 398 (567)
T ss_dssp EEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred EEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeC--CCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECC
Confidence 999998776432 222 34456778999999999888886 688999999999998887776 3211 1222 578
Q ss_pred CCCeEEEEEecCCCcEEEEECCC
Q 014934 388 NVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 388 ~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
++..+.++....++.|.+++..+
T Consensus 399 ~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 399 TFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCcEEEeCCCCCCeEEEecCCC
Confidence 75555443233568999999887
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.4e-13 Score=128.83 Aligned_cols=171 Identities=9% Similarity=0.001 Sum_probs=135.4
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe-----------eeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEEC
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-----------RVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDI 277 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~-----------~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~ 277 (415)
..+..+++++...++++|+.++ +.+|+++..+ ..... .+.. |..|+|++..|+++ .++.|++||+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCFHGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEEETTEEEEE-ESSEEEEEES
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEECCCEEEEE-cCCcEEEEEc
Confidence 3689999999999999999985 6669865332 11222 3556 99999987889888 8899999999
Q ss_pred CCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCC
Q 014934 278 RAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTAD 357 (415)
Q Consensus 278 ~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d 357 (415)
++.. .......|...+.++.+.+. .+|++..||.|.+||+.++.... +...|++++|+|.| + +.|. .|
T Consensus 114 ~sl~-~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~-~vg~--~d 181 (388)
T 1xip_A 114 EELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--L-AVLL--KD 181 (388)
T ss_dssp SSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--E-EEEE--TT
T ss_pred hhhh-ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--e-EEEE--cC
Confidence 8876 34556677888998888754 38999999999999999887643 45689999999998 3 3444 69
Q ss_pred CeEEEEECCCCcE--EEEe------e----CCCCEEEEEECCCCCeEEEE
Q 014934 358 RCIRFWNTTTNTH--LSCM------D----TGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 358 ~~I~iwd~~t~~~--~~~~------~----~~~~V~~l~~s~~~~~l~s~ 395 (415)
|.|++|+...++. ..++ . +...|.++.|.+++.++++-
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999999888775 5566 2 46779999999999988874
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-11 Score=111.00 Aligned_cols=220 Identities=14% Similarity=0.113 Sum_probs=151.9
Q ss_pred ceeEeecCC--CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
......|++ +.++.+. .++.|+.|+..+++.. .+. ....+.+++++++|+++ ++. ++.|.+||..+++....
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~--~~~~~~~i~~~~dG~l~-v~~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT--MDAPVSSVALRQSGGYV-ATI-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE--CSSCEEEEEEBTTSSEE-EEE-TTEEEEEETTTTEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe--CCCceEEEEECCCCCEE-EEE-CCeEEEEECCCCcEEEE
Confidence 466889998 4556665 4689999999988763 332 34689999999999954 445 56799999988764433
Q ss_pred ecC----CCccEEEEEee--CCEEEEEeC---------CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEE-EE
Q 014934 246 MEG----HRLRVGALAWS--SSLLSSGSR---------DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELA-SG 309 (415)
Q Consensus 246 l~~----h~~~V~~l~~~--~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-sg 309 (415)
... ....+.+++++ ++++++... .....+|.+..... ...+..+.....+++|+||++.|+ +.
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv~~ 167 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYYID 167 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEEec
Confidence 221 23468889887 454444322 12334454443332 233333445578999999998765 45
Q ss_pred eCCCcEEEEEC--CCCce-----eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC-CCEE
Q 014934 310 GNDNRLFVWNQ--HSTQP-----VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQVC 381 (415)
Q Consensus 310 ~~dg~I~iwd~--~~~~~-----~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-~~V~ 381 (415)
+.++.|.+||+ .++.. +..+..+......+++.++|. ++++.. ..+.|..||..+|+.+..+... ..++
T Consensus 168 ~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~--~~~~v~~~d~~tG~~~~~i~~p~~~~t 244 (297)
T 3g4e_A 168 SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACY--NGGRVIRLDPVTGKRLQTVKLPVDKTT 244 (297)
T ss_dssp GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEE--TTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEc--CCCEEEEEcCCCceEEEEEECCCCCce
Confidence 56789999987 45542 223334456788999999996 666654 4688999999999999888865 6799
Q ss_pred EEEEC-CCCCeEEEEEe
Q 014934 382 NLVWS-KNVNELVSTHG 397 (415)
Q Consensus 382 ~l~~s-~~~~~l~s~~g 397 (415)
+++|. |+++.|.+++.
T Consensus 245 ~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 245 SCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEESGGGCEEEEEEB
T ss_pred EEEEeCCCCCEEEEEcC
Confidence 99998 89888877654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.3e-11 Score=122.20 Aligned_cols=240 Identities=13% Similarity=0.079 Sum_probs=172.9
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECC--CCCeEEeEecCCCCCeEEEEEc----CCCCeEEEEEC-CCcEEEEECC
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNAC--SSKVTKLCDLGIDDSVCSVGWA----NRNTHLAVGTS-HGKVQIWDAS 238 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~--~~~~~~~~~~~~~~~V~~v~~s----p~g~~la~g~~-dg~V~iwd~~ 238 (415)
..+..+.++| ++++.++ .++.|.+||+. +++....+.. ......++|+ |||+++++++. ++.|.++|..
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence 3466889999 6665555 57899999996 7777766653 3457899999 69998888765 5899999999
Q ss_pred CCeeeEEecC----------C-CccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCC
Q 014934 239 RCKRVRTMEG----------H-RLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR 304 (415)
Q Consensus 239 ~~~~~~~l~~----------h-~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 304 (415)
+.+.+..+.. | ..++..+..+ +.+++....+|.|.++|...................++.|+|+|+
T Consensus 275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr 354 (567)
T 1qks_A 275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR 354 (567)
T ss_dssp TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCC
Confidence 9988877652 1 1267777776 346666777899999998776432222223345677899999999
Q ss_pred EEEEEe-CCCcEEEEECCCCceeEEecc-----CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC-------CcEE
Q 014934 305 ELASGG-NDNRLFVWNQHSTQPVLKYCE-----HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-------NTHL 371 (415)
Q Consensus 305 ~lasg~-~dg~I~iwd~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t-------~~~~ 371 (415)
+|+++. .++.|.++|+.+++.+..+.- |.+....+ ++|++..+++++. ..++.|.++|+.+ .+.+
T Consensus 355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~-~g~~~Vsvid~~~~~~~~~~~kvv 432 (567)
T 1qks_A 355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSH-MGDDSVALIGTDPEGHPDNAWKIL 432 (567)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSEE
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCC-CCCCeEEEecCCCCCCccccCEEE
Confidence 987765 578999999999987766543 33222222 6887666777663 1368999999988 5678
Q ss_pred EEeeCC-CCEEEEEECCCCCeEEEEEe-cC----CCcEEEEECCCC
Q 014934 372 SCMDTG-SQVCNLVWSKNVNELVSTHG-YS----QNQIIVWRYPTM 411 (415)
Q Consensus 372 ~~~~~~-~~V~~l~~s~~~~~l~s~~g-~~----dg~I~vw~~~s~ 411 (415)
+.+... ..-..+..+|++++|.+... .. .+.|.|+|+.++
T Consensus 433 ~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 433 DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 888754 33355789999999988431 11 359999999877
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-11 Score=118.99 Aligned_cols=239 Identities=10% Similarity=0.023 Sum_probs=167.3
Q ss_pred eecCC-CcEEEEEc-----------CCeEEEEECCCCCeEEeEecCC------CCCeEEEEEcCCCCeEEEEEC--CCcE
Q 014934 173 VDWSS-HNVLAVGL-----------GNCVYLWNACSSKVTKLCDLGI------DDSVCSVGWANRNTHLAVGTS--HGKV 232 (415)
Q Consensus 173 l~ws~-~~~la~~~-----------d~~V~iwd~~~~~~~~~~~~~~------~~~V~~v~~sp~g~~la~g~~--dg~V 232 (415)
+.++| ++.|.++. ++.|.+||..+.++...+.++. ......+.++|||++|.++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 77888 56555543 4679999999999888776543 135677999999999998874 6899
Q ss_pred EEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccc----cCCeE-EEEEe-CCCCEE
Q 014934 233 QIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGH----KSEVC-GLKWS-YDNREL 306 (415)
Q Consensus 233 ~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h----~~~V~-~l~~s-pdg~~l 306 (415)
.++|+.+++.+.++... +.........+.+++.+.||.+.+.++....+.......+ ...+. ...|. ++|+++
T Consensus 163 sVID~~t~~vv~tI~v~-g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~ 241 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVP-DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV 241 (386)
T ss_dssp EEEETTTTEEEEEEECC-SEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred EEEECCCCcEEEEEECC-CcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE
Confidence 99999999999888632 2111111225778888999999999998633332221111 12221 24564 577554
Q ss_pred EEEeCCCcEEEEECCCCce--eEEec---c-------CCCcEEEEEEcCCCCcEEEEEcC----C---CCCeEEEEECCC
Q 014934 307 ASGGNDNRLFVWNQHSTQP--VLKYC---E-------HTAAVKAIAWSPHLHGLLASGGG----T---ADRCIRFWNTTT 367 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~--~~~~~---~-------h~~~V~~l~~sp~~~~llasggg----~---~d~~I~iwd~~t 367 (415)
+ .+.+|.|++.|+.+... +..+. . .......++++++++.++++... + ..+.|.+.|+.+
T Consensus 242 ~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t 320 (386)
T 3sjl_D 242 W-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 320 (386)
T ss_dssp E-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred E-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC
Confidence 4 56689999999976642 22221 0 11233457789999888887520 0 125799999999
Q ss_pred CcEEEEeeCCCCEEEEEECCCCC-eEEEEEecCCCcEEEEECCCCccc
Q 014934 368 NTHLSCMDTGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 368 ~~~~~~~~~~~~V~~l~~s~~~~-~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
++.+..+..+..+.++.+++|++ .|+++. ..++.|.++|..+++.+
T Consensus 321 ~kv~~~i~vg~~~~~lavs~D~~~~ly~tn-~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 321 GERLAKFEMGHEIDSINVSQDEKPLLYALS-TGDKTLYIHDAESGEEL 367 (386)
T ss_dssp CCEEEEEEEEEEECEEEECSSSSCEEEEEE-TTTTEEEEEETTTCCEE
T ss_pred CeEEEEEECCCCcceEEECCCCCeEEEEEc-CCCCeEEEEECCCCcEE
Confidence 99999999888999999999997 666653 46889999999988753
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.3e-10 Score=103.97 Aligned_cols=231 Identities=10% Similarity=-0.052 Sum_probs=160.6
Q ss_pred cceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
..+..+.+++ ++++++.. ++.|+.|+.. ++............+.++++.++|.++++...++.|.+||. +++....
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~ 134 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREY 134 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEe
Confidence 3577888888 66666665 6789999986 45433221124567999999999987777667889999998 5543332
Q ss_pred -ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 246 -MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 246 -l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
...+...+.++++. +.++++...++.|..||. ++.........+...+.+++++++|+++++...++.|.+||. +
T Consensus 135 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~ 212 (299)
T 2z2n_A 135 ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-S 212 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-C
Confidence 33345678899988 355555556789999998 544211123334567889999999998877777889999999 6
Q ss_pred CceeE-EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee---CCCCEEEEEECCCCCeEEEEEec
Q 014934 323 TQPVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---TGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 323 ~~~~~-~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~---~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
++... ....+...+.++++.++|. ++++.. .++.|..||. +++ +..+. ....+.++++ ++++.+++ ..
T Consensus 213 g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~--~~ 284 (299)
T 2z2n_A 213 GEITEFKIPTPNARPHAITAGAGID-LWFTEW--GANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFA--ME 284 (299)
T ss_dssp CCEEEEECSSTTCCEEEEEECSTTC-EEEEET--TTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEE--ET
T ss_pred CcEEEEECCCCCCCceeEEECCCCC-EEEecc--CCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEE--ec
Confidence 65432 2233556789999999987 777654 4789999998 454 33332 3467899999 88887766 33
Q ss_pred CCCcEEEEECCCC
Q 014934 399 SQNQIIVWRYPTM 411 (415)
Q Consensus 399 ~dg~I~vw~~~s~ 411 (415)
.+.|..++..+.
T Consensus 285 -~~~l~~~~~~~~ 296 (299)
T 2z2n_A 285 -CDKIGKLTLIKD 296 (299)
T ss_dssp -TTEEEEEEEC--
T ss_pred -CCcEEEEEcCcc
Confidence 567888887654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-11 Score=115.05 Aligned_cols=217 Identities=10% Similarity=0.004 Sum_probs=156.2
Q ss_pred CCeEEEEECCCCCeEEeEec-----CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee-
Q 014934 186 GNCVYLWNACSSKVTKLCDL-----GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS- 259 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~-----~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~- 259 (415)
++.|.+||..++++...+.. ........+.+. +++..++...++.|.+||..+++.+..+. .......++++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence 57899999999987654311 122456778774 34455555567899999999999988885 34668888884
Q ss_pred CCEEEEEe-CCCcEEEEECCCCCccEEEecccc-----CCeEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeEEeccC
Q 014934 260 SSLLSSGS-RDKSILQRDIRAQEDFVSKLSGHK-----SEVCGLKWSYDNRELASGG-NDNRLFVWNQHSTQPVLKYCEH 332 (415)
Q Consensus 260 ~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~spdg~~lasg~-~dg~I~iwd~~~~~~~~~~~~h 332 (415)
...++++. .++.|.+||..+.. ....+.... ....++++ .++.++++.. .++.|.+||+.+++.+..+..
T Consensus 94 ~g~lyv~~~~~~~v~~iD~~t~~-~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~- 170 (328)
T 3dsm_A 94 DEKAYVTQIWDYRIFIINPKTYE-ITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI- 170 (328)
T ss_dssp TTEEEEEEBSCSEEEEEETTTTE-EEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-
T ss_pred CCeEEEEECCCCeEEEEECCCCe-EEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-
Confidence 44666665 89999999998876 344443222 14566777 3444444443 488999999999988877754
Q ss_pred CCcEEEEEEcCCCCcEEEEEcCCC--------CCeEEEEECCCCcEEEEeeC--CCCEEEEEECCCCCeEEEEEecCCCc
Q 014934 333 TAAVKAIAWSPHLHGLLASGGGTA--------DRCIRFWNTTTNTHLSCMDT--GSQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 333 ~~~V~~l~~sp~~~~llasggg~~--------d~~I~iwd~~t~~~~~~~~~--~~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
......++++|+|+ +++++.+.. .+.|.++|..+++....+.. +.....++|+|+++.|.++ . +.
T Consensus 171 g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~--~--~~ 245 (328)
T 3dsm_A 171 GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI--N--ND 245 (328)
T ss_dssp SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE--S--SS
T ss_pred CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE--c--cE
Confidence 33457889999987 666654211 27899999999998877764 4578999999999999883 2 28
Q ss_pred EEEEECCCCc
Q 014934 403 IIVWRYPTMS 412 (415)
Q Consensus 403 I~vw~~~s~~ 412 (415)
|.+||..+.+
T Consensus 246 v~~~d~~t~~ 255 (328)
T 3dsm_A 246 IWRMPVEADR 255 (328)
T ss_dssp EEEEETTCSS
T ss_pred EEEEECCCCc
Confidence 9999987754
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-11 Score=119.88 Aligned_cols=213 Identities=8% Similarity=0.002 Sum_probs=148.9
Q ss_pred ceeEeecCC-CcEEEEEc---CCeEEEEECCCCCeEEe-EecCCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCC-Ce
Q 014934 169 YLNLVDWSS-HNVLAVGL---GNCVYLWNACSSKVTKL-CDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASR-CK 241 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~---d~~V~iwd~~~~~~~~~-~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~-~~ 241 (415)
....+.++| +++|.++. ++.|.+||+.+++.... +.. .....+.+.|++ ..+++.+.||.+.+|+... ++
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~ 185 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA---AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK 185 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG---TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC---CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence 345678998 77777763 47899999999987665 432 223346677876 6778888999999999865 44
Q ss_pred eeEE------ecCCCccEEE-EEeeCCEEEEEeCCCcEEEEECCCCCccE-EEec--c----c----cCCeEEEEEeCCC
Q 014934 242 RVRT------MEGHRLRVGA-LAWSSSLLSSGSRDKSILQRDIRAQEDFV-SKLS--G----H----KSEVCGLKWSYDN 303 (415)
Q Consensus 242 ~~~~------l~~h~~~V~~-l~~~~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~--~----h----~~~V~~l~~spdg 303 (415)
.... +..+..++.. ..-.+..++..+.++.|.++|+......+ ..+. . + ......++++|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg 265 (361)
T 2oiz_A 186 VASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS 265 (361)
T ss_dssp EEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTT
T ss_pred EeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCC
Confidence 4311 1222222110 01124566667788999999997654211 1111 0 0 0112237899998
Q ss_pred CEEEEEeC-----------CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC--cE
Q 014934 304 RELASGGN-----------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN--TH 370 (415)
Q Consensus 304 ~~lasg~~-----------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~--~~ 370 (415)
+.++++.. .+.|.+||+.+++.+.++..+. +.+++|+|+|+.|+ +++ . +.|.+||+.++ +.
T Consensus 266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~-v~n--~-~~v~v~D~~t~~l~~ 339 (361)
T 2oiz_A 266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLML-TLD--G-GNVNVYDISQPEPKL 339 (361)
T ss_dssp TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEE-EEC--S-SCEEEEECSSSSCEE
T ss_pred CeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEE-EeC--C-CeEEEEECCCCccee
Confidence 88777543 3589999999999999998776 99999999999555 443 4 99999999999 99
Q ss_pred EEEe-eCCCCEEEEEECCCCC
Q 014934 371 LSCM-DTGSQVCNLVWSKNVN 390 (415)
Q Consensus 371 ~~~~-~~~~~V~~l~~s~~~~ 390 (415)
+..+ ..+.....+.++|+|+
T Consensus 340 ~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 340 LRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEETTSCSSEEEEEECCCSC
T ss_pred eEEeccCCCCcEEEEecCCCC
Confidence 9997 5788889999999986
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.5e-10 Score=103.31 Aligned_cols=231 Identities=10% Similarity=-0.068 Sum_probs=162.6
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE-
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR- 244 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~- 244 (415)
.....+.+.+ +++.++. .++.|.+|+.. ++............+.++++.++|.++++...++.|..||.. ++...
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~ 97 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEY 97 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEe
Confidence 3567888888 6666666 46899999988 666543221234679999999999877766667889999987 55432
Q ss_pred EecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 245 TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
.+......+.++++. +.++++...++.|..+|.. +......+......+.++++.++|+++++...++.|.+||. +
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 223344678889887 4566666568889999987 43221223334567899999999997777766889999998 5
Q ss_pred CceeE-EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe-e-CCCCEEEEEECCCCCeEEEEEecC
Q 014934 323 TQPVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM-D-TGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 323 ~~~~~-~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~-~-~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
++... ....+...+.++++.+++. ++++.. ..+.|.+||. +++..... . ....+.+++++++|+.+++ ...
T Consensus 176 g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~--~~~ 249 (300)
T 2qc5_A 176 GKLEEYPLPTNAAAPVGITSGNDGA-LWFVEI--MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT--EWG 249 (300)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE--ETT
T ss_pred CcEEEeeCCCCCCCcceEEECCCCC-EEEEcc--CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe--ccC
Confidence 55433 2223456789999999885 776654 4678999998 56544332 2 3466899999999987666 445
Q ss_pred CCcEEEEEC
Q 014934 400 QNQIIVWRY 408 (415)
Q Consensus 400 dg~I~vw~~ 408 (415)
++.|..|+.
T Consensus 250 ~~~i~~~~~ 258 (300)
T 2qc5_A 250 ANQIGRITN 258 (300)
T ss_dssp TTEEEEECT
T ss_pred CCeEEEECC
Confidence 678888886
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.4e-12 Score=116.34 Aligned_cols=184 Identities=13% Similarity=0.024 Sum_probs=145.1
Q ss_pred CCCeEEEEECCCcEEEEECCCCeeeEEecCCC-ccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccc-cCCe
Q 014934 219 RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR-LRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGH-KSEV 294 (415)
Q Consensus 219 ~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~-~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V 294 (415)
.+++|++++.++.|.+||.++++.+..+..+. ..+.++.+. +++|+ +.++.|..||. +++ .+..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-ELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-EEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-EEEEEcCCCCccc
Confidence 46789999999999999999999999888765 467777776 56777 45788999998 565 45556554 3578
Q ss_pred EEEEEeCCCCEEEEEeC-CCcEEEEECCCCceeEEecc------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 295 CGLKWSYDNRELASGGN-DNRLFVWNQHSTQPVLKYCE------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 295 ~~l~~spdg~~lasg~~-dg~I~iwd~~~~~~~~~~~~------h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t 367 (415)
.++.+.++|+++++.+. ++.|..+|. +++.+.++.. +......+++.++|. ++++.. .++.|..||..
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~--~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLF--ATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEET--TTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-EEEEec--CCCEEEEECCC-
Confidence 89999999999999887 788888886 7777776641 222445667889987 556655 69999999998
Q ss_pred CcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 368 NTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 368 ~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
|+.+..+.....+.++...++|+.+++ +..++.|..+|..+++.
T Consensus 155 G~~~w~~~~~~~~~~~~~~~~g~~~v~--~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 155 GQLLNSVKLSGTPFSSAFLDNGDCLVA--CGDAHCFVQLNLESNRI 198 (276)
T ss_dssp SCEEEEEECSSCCCEEEECTTSCEEEE--CBTTSEEEEECTTTCCE
T ss_pred CCEEEEEECCCCccceeEcCCCCEEEE--eCCCCeEEEEeCcCCcE
Confidence 999999987777778889999999988 66677899999877664
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-11 Score=113.32 Aligned_cols=191 Identities=8% Similarity=-0.026 Sum_probs=140.1
Q ss_pred CCCCeEEEEEcCCCC-eEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc
Q 014934 207 IDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (415)
Q Consensus 207 ~~~~V~~v~~sp~g~-~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (415)
+.....+++|+|+|+ +++++..++.|..||..++ ...+..+...+.+++++ +.++++...++.|.+||..++. .
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~-~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE-W 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC-E
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc-E
Confidence 446788999999998 7888888999999999877 56666677889999998 4566666667899999997765 2
Q ss_pred EEEecc----ccCCeEEEEEeCCCCEEEEE----e-------------CCCcEEEEECCCCceeEEeccCCCcEEEEEEc
Q 014934 284 VSKLSG----HKSEVCGLKWSYDNRELASG----G-------------NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342 (415)
Q Consensus 284 ~~~~~~----h~~~V~~l~~spdg~~lasg----~-------------~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 342 (415)
...... ....+..++++|+|+++++. . ..+.|..+|.. ++ +..+..+......++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFL 180 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEEC
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEEC
Confidence 222221 12346789999999998873 3 13467777765 44 34455667778999999
Q ss_pred CCCCcEEEEEcCCCCCeEEEEECC-CCcE---EEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 343 PHLHGLLASGGGTADRCIRFWNTT-TNTH---LSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 343 p~~~~llasggg~~d~~I~iwd~~-t~~~---~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
|+++.+ ++.. .++.|.+|++. +++. ...+. ....+.+++++++|+.+++ . ++.|.+|+..
T Consensus 181 ~dg~~l-v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~--~--~~~v~~~~~~ 245 (296)
T 3e5z_A 181 PSGNLL-VSDT--GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS--A--GDGVHVLTPD 245 (296)
T ss_dssp TTSCEE-EEET--TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEE--E--TTEEEEECTT
T ss_pred CCCCEE-EEeC--CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEE--c--CCeEEEECCC
Confidence 999866 6665 68899999987 5554 22221 2345678999999987766 3 6789999975
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-10 Score=114.93 Aligned_cols=231 Identities=13% Similarity=0.075 Sum_probs=160.9
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC--cEEEEECCCCeeeE
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG--KVQIWDASRCKRVR 244 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg--~V~iwd~~~~~~~~ 244 (415)
....|+|++ ++++++.. ++.|++||..++.+..+... ..... ++|+++++.|+++..++ .|.+|+...+....
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET--CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc--CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 467889988 66666654 47999999998887776653 22334 99999999999888766 78888887654433
Q ss_pred Ee----cCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEE---eccccCCe--EEEEEeCC-CCEEEEEeCC
Q 014934 245 TM----EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSK---LSGHKSEV--CGLKWSYD-NRELASGGND 312 (415)
Q Consensus 245 ~l----~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~h~~~V--~~l~~spd-g~~lasg~~d 312 (415)
.+ ......+.++++++ ..|+.+..++.|+.||.......... ..++...- ..++|+|+ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 33 22445677888874 56666778889999999876521110 12222222 39999995 6666666778
Q ss_pred CcEEEEECCCCceeEEeccCC---------------CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-
Q 014934 313 NRLFVWNQHSTQPVLKYCEHT---------------AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT- 376 (415)
Q Consensus 313 g~I~iwd~~~~~~~~~~~~h~---------------~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~- 376 (415)
+.|+.||.... +..+.++. .....++++|+|. ++++.. ..++.|+.|++.+|.......+
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~-~~~~~I~~~~~~~G~v~~~~g~~ 364 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDG-FKGYCLRKLDILDGYVSTVAGQV 364 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEET-TTTCEEEEEETTTTEEEEEEECT
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeC-CCCCEEEEEECCCCEEEEEeCCC
Confidence 89999997644 33333332 3478999999998 766642 0378999999888875444333
Q ss_pred --------------CCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 377 --------------GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 377 --------------~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
-.....+++++++..+++ ...++.|+.+++
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa--d~~n~~Ir~i~~ 408 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIA--EAWGKAIRKYAV 408 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE--ESTTCEEEEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcCCCCEEEE--ECCCCeEEEEEe
Confidence 145889999999877776 667788888765
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-11 Score=128.72 Aligned_cols=214 Identities=8% Similarity=-0.025 Sum_probs=145.6
Q ss_pred eEEEEECCCCCeEEeEec-----CCCCCeEEEEEcCCCCeEEEEE-----CCCcEEEEECCCCeeeEEecCCCccE--EE
Q 014934 188 CVYLWNACSSKVTKLCDL-----GIDDSVCSVGWANRNTHLAVGT-----SHGKVQIWDASRCKRVRTMEGHRLRV--GA 255 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~-----~~~~~V~~v~~sp~g~~la~g~-----~dg~V~iwd~~~~~~~~~l~~h~~~V--~~ 255 (415)
.|++.+...++...++.. +|...+.+++|||||++||.+. .+..|++||+.+++.+. ..+...+ ..
T Consensus 95 ~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~ 172 (695)
T 2bkl_A 95 ILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYAT 172 (695)
T ss_dssp EEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCC
T ss_pred EEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccc
Confidence 456666666665555432 2344689999999999999543 34579999999987641 1122222 67
Q ss_pred EEee--CCEEEEEeCCCc-------------EEEEECCCCCc---cEEEeccccCCeEEEEEeCCCCEEEEEeCCC----
Q 014934 256 LAWS--SSLLSSGSRDKS-------------ILQRDIRAQED---FVSKLSGHKSEVCGLKWSYDNRELASGGNDN---- 313 (415)
Q Consensus 256 l~~~--~~~l~sgs~dg~-------------I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg~~lasg~~dg---- 313 (415)
++|+ ++.|+.++.|.. |++|++.++.. .+.....|...+.++.|+|||++|+.++.++
T Consensus 173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 252 (695)
T 2bkl_A 173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEN 252 (695)
T ss_dssp CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEE
T ss_pred eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCce
Confidence 8998 468888888776 99999987752 2223334556789999999999998877666
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEc-CCCCCeEEEEECCCCcE---EEEeeC--CCCEEEEEECC
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGG-GTADRCIRFWNTTTNTH---LSCMDT--GSQVCNLVWSK 387 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg-g~~d~~I~iwd~~t~~~---~~~~~~--~~~V~~l~~s~ 387 (415)
.|++||..+++ ...+..+...+....| +++. +++.+. +..++.|.+||+.+++. ...+.+ ...+..+.|+
T Consensus 253 ~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~- 328 (695)
T 2bkl_A 253 DVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV- 328 (695)
T ss_dssp EEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-
T ss_pred EEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-
Confidence 78888776554 4455566666677777 6666 666653 11368899999988753 333333 3457888888
Q ss_pred CCCeEEEEEecCCCcEEEEECC
Q 014934 388 NVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 388 ~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
++..+++ ...|+..+||.+.
T Consensus 329 ~~~lv~~--~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 329 GGHLSLE--YLKDATSEVRVAT 348 (695)
T ss_dssp TTEEEEE--EEETTEEEEEEEE
T ss_pred CCEEEEE--EEECCEEEEEEEe
Confidence 5555555 5678887777654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=9e-10 Score=104.55 Aligned_cols=215 Identities=12% Similarity=0.037 Sum_probs=146.2
Q ss_pred ceeEeecCC--CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
......|++ +.++.++ .++.|+.|+..+++... +. ....+.++.|+++|+++++ +.+| |.+||..+++....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~--~~~~v~~i~~~~dg~l~v~-~~~g-l~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA--LPFMGSALAKISDSKQLIA-SDDG-LFLRDTATGVLTLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE--CSSCEEEEEEEETTEEEEE-ETTE-EEEEETTTCCEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE--CCCcceEEEEeCCCeEEEE-ECCC-EEEEECCCCcEEEE
Confidence 356788998 4556666 46899999998876543 33 2467999999999987665 4444 99999988765433
Q ss_pred ecC----CCccEEEEEee--CCEEEEEeC------CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEE-eCC
Q 014934 246 MEG----HRLRVGALAWS--SSLLSSGSR------DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASG-GND 312 (415)
Q Consensus 246 l~~----h~~~V~~l~~~--~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg-~~d 312 (415)
... ....+.+++++ ++++++... .+.|+.+| .+. ...+..+.....+++|+||++.|+.+ ..+
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence 221 12468899998 355444332 24566666 332 33333344567899999999877554 457
Q ss_pred CcEEEEECC--CC-c-----eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC-CCEEEE
Q 014934 313 NRLFVWNQH--ST-Q-----PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQVCNL 383 (415)
Q Consensus 313 g~I~iwd~~--~~-~-----~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-~~V~~l 383 (415)
+.|.+||+. ++ . .+..+......+..+++.++|. ++++.. .++.|..||. +++.+..+... ..+.++
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~--~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARW--GEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEE--TTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEe--CCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 899999985 55 3 1223333455678899999987 555543 3678999998 67777777644 469999
Q ss_pred EEC-CCCCeEEEEE
Q 014934 384 VWS-KNVNELVSTH 396 (415)
Q Consensus 384 ~~s-~~~~~l~s~~ 396 (415)
+|+ ++++.|+++.
T Consensus 277 af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 277 AFIGPDASRLLVTS 290 (326)
T ss_dssp EEESTTSCEEEEEE
T ss_pred EEecCCCCEEEEEe
Confidence 998 8888876653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-11 Score=118.08 Aligned_cols=239 Identities=11% Similarity=0.053 Sum_probs=169.4
Q ss_pred EeecCC-CcEEEEEc-----------CCeEEEEECCCCCeEEeEecC-C-----CCCeEEEEEcCCCCeEEEEEC--CCc
Q 014934 172 LVDWSS-HNVLAVGL-----------GNCVYLWNACSSKVTKLCDLG-I-----DDSVCSVGWANRNTHLAVGTS--HGK 231 (415)
Q Consensus 172 ~l~ws~-~~~la~~~-----------d~~V~iwd~~~~~~~~~~~~~-~-----~~~V~~v~~sp~g~~la~g~~--dg~ 231 (415)
.+.++| ++.|.++. ++.|.++|..+.+....+.++ . ......+.++|||++|.++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 577888 55555553 468999999999988877654 1 234567899999999999874 578
Q ss_pred EEEEECCCCeeeEEecCCCccEEEEEe-eCCEEEEEeCCCcEEEEECCCCCccEEE----eccccCCe-EEEEEeCCCCE
Q 014934 232 VQIWDASRCKRVRTMEGHRLRVGALAW-SSSLLSSGSRDKSILQRDIRAQEDFVSK----LSGHKSEV-CGLKWSYDNRE 305 (415)
Q Consensus 232 V~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~----~~~h~~~V-~~l~~spdg~~ 305 (415)
|.+.|+.+.+.+..+.-.. . ..+.. ....+++.+.||.+.+.+...+. .... +.....++ ..+.+.+++..
T Consensus 202 VsVID~~t~kvv~~I~v~g-~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~-v~~~~~~~~~v~~~p~~~~~~~~~dg~~ 278 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPD-C-YHIFPASPTVFYMNCRDGSLARVDFADGE-TKVTNTEVFHTEDELLINHPAFSLRSGR 278 (426)
T ss_dssp EEEEETTTTEEEEEEECCS-E-EEEEEEETTEEEEEETTSSEEEEECCTTC-CEEEECCCCSCTTSCBCSCCEECTTTCE
T ss_pred EEEEECCCCeEEEEEEcCC-c-eeeccCCCcEEEEEcCCCCEEEEECCCCc-EEEEeeeeeccCCCceeeEeeecCCCCE
Confidence 9999999999988876422 1 12222 24677788899999999995443 2321 11111121 23567899998
Q ss_pred EEEEeCCCcEEEEECCCCceeE--Eecc----------CCCcEEEEEEcCCCCcEEEEEcCC-------CCCeEEEEECC
Q 014934 306 LASGGNDNRLFVWNQHSTQPVL--KYCE----------HTAAVKAIAWSPHLHGLLASGGGT-------ADRCIRFWNTT 366 (415)
Q Consensus 306 lasg~~dg~I~iwd~~~~~~~~--~~~~----------h~~~V~~l~~sp~~~~llasggg~-------~d~~I~iwd~~ 366 (415)
++.....+.|.+.|........ .+.- .......++++|+++.++++.... ..+.|.++|+.
T Consensus 279 ~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~ 358 (426)
T 3c75_H 279 LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE 358 (426)
T ss_dssp EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence 8888888999999987553211 1110 011122378999998888875210 13579999999
Q ss_pred CCcEEEEeeCCCCEEEEEECCCCC-eEEEEEecCCCcEEEEECCCCccc
Q 014934 367 TNTHLSCMDTGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 367 t~~~~~~~~~~~~V~~l~~s~~~~-~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+++.+..+..+....++.|+++|+ .++++ ...++.|.|+|..+++.+
T Consensus 359 T~kvv~~I~vg~~P~gia~spDg~~~lyv~-n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 359 TGERINKIELGHEIDSINVSQDAEPLLYAL-SAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp TCCEEEEEEEEEEECEEEECCSSSCEEEEE-ETTTTEEEEEETTTCCEE
T ss_pred CCeEEEEEECCCCcCeEEEccCCCEEEEEE-cCCCCeEEEEECCCCCEE
Confidence 999999998877899999999999 77775 446899999999988753
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.3e-11 Score=109.57 Aligned_cols=197 Identities=10% Similarity=0.009 Sum_probs=140.3
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
.+..+++++ ++++++..++.|++|+..+...... .......+.++++.++|+++++...++.|.+|+..+........
T Consensus 68 ~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~-~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~ 146 (270)
T 1rwi_B 68 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL-PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF 146 (270)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC-CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC
T ss_pred CcceeEECCCCCEEEEcCCCEEEEEeCCCceEeee-ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc
Confidence 355778887 5666665678999999877654332 22333678999999999977776778899999876554333222
Q ss_pred CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q 014934 248 GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP 325 (415)
Q Consensus 248 ~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~ 325 (415)
.....+.+++++ ++++++...++.|.+||...... ......+...+.+++++++|.++++...++.|.+||......
T Consensus 147 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 147 TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp CSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred ccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce-EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence 333456778887 46666666678999999876652 222233336789999999998888887889999999876544
Q ss_pred eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE
Q 014934 326 VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370 (415)
Q Consensus 326 ~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~ 370 (415)
......+...+.+++++++|. ++++.. .++.|+++++...+.
T Consensus 226 ~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 226 TVLPFTGLNTPLAVAVDSDRT-VYVADR--GNDRVVKLTSLEHHH 267 (270)
T ss_dssp EECCCCSCSCEEEEEECTTCC-EEEEEG--GGTEEEEECCCGGGS
T ss_pred eeeccCCCCCceeEEECCCCC-EEEEEC--CCCEEEEEcCCCccc
Confidence 332223446789999999986 777776 689999999876543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-09 Score=99.49 Aligned_cols=228 Identities=9% Similarity=-0.068 Sum_probs=157.7
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE-
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT- 245 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~- 245 (415)
.+..+.+.+ +++.++.. ++.|+.||.. ++............+.++++.++|+++++...++.|..||.. ++....
T Consensus 63 ~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~ 140 (300)
T 2qc5_A 63 KVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD 140 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred cceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc
Confidence 467788888 66666654 5789999987 666433321234679999999999877776668899999987 554422
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+......+.++++. ++++++...++.|..+|. .+.........+...+.+++++++|+++++....+.|.+||. ++
T Consensus 141 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g 218 (300)
T 2qc5_A 141 LPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TG 218 (300)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred CCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CC
Confidence 33345678889887 455555555788999998 443222222234457899999999988877777788999998 55
Q ss_pred ceeEE-eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE-ee-CCCCEEEEEECCCCCeEEEEEecCC
Q 014934 324 QPVLK-YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC-MD-TGSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 324 ~~~~~-~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~-~~-~~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
+.... +..+...+.++++.+++. ++++.. .++.|..||. +++.... +. ....+.+++++++|+.+++ .. .
T Consensus 219 ~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~-~ 291 (300)
T 2qc5_A 219 EISEYDIPTPNARPHAITAGKNSE-IWFTEW--GANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFA--LK-C 291 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTC-EEEEET--TTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEE--CS-S
T ss_pred cEEEEECCCCCCCceEEEECCCCC-EEEecc--CCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEE--cc-C
Confidence 44332 334556789999999987 777654 4789999998 4544322 22 2456888999999986665 33 3
Q ss_pred CcEEEEEC
Q 014934 401 NQIIVWRY 408 (415)
Q Consensus 401 g~I~vw~~ 408 (415)
.|..++.
T Consensus 292 -~i~~~~p 298 (300)
T 2qc5_A 292 -KIGKLNL 298 (300)
T ss_dssp -EEEEEEE
T ss_pred -ceEEeCC
Confidence 6766664
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-10 Score=121.23 Aligned_cols=248 Identities=13% Similarity=0.078 Sum_probs=165.9
Q ss_pred ceeccCCCCCC--CcceeEeecCC-CcEEEEEcC------CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE
Q 014934 156 YKILDAPALQD--DFYLNLVDWSS-HNVLAVGLG------NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG 226 (415)
Q Consensus 156 ~~~ld~~~l~~--~~~i~~l~ws~-~~~la~~~d------~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g 226 (415)
..+||...+.. .+.+..+.||| ++.||.+.+ ..|++||+.+++...... . .....+++|+ ||+.|+.+
T Consensus 115 ~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~-~~k~~~~~Ws-Dg~~l~y~ 191 (693)
T 3iuj_A 115 EVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-K-DVKFSGISWL-GNEGFFYS 191 (693)
T ss_dssp EEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-E-EEESCCCEEE-TTTEEEEE
T ss_pred EEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-C-CceeccEEEe-CCCEEEEE
Confidence 44555543332 34688889999 788887632 369999999998755432 1 1113578999 99999999
Q ss_pred ECCCc-------------EEEEECCCCee--eEEec--C-CCccEEEEEee--CCEEEE-EeC---CCcEEEEECCCCCc
Q 014934 227 TSHGK-------------VQIWDASRCKR--VRTME--G-HRLRVGALAWS--SSLLSS-GSR---DKSILQRDIRAQED 282 (415)
Q Consensus 227 ~~dg~-------------V~iwd~~~~~~--~~~l~--~-h~~~V~~l~~~--~~~l~s-gs~---dg~I~iwd~~~~~~ 282 (415)
+.+.. |.+|++.+... ...+. . |...+..+.|+ +++|+. .+. ++.|+++|+..+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 192 SYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp ESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred EecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 88743 99999977542 23333 3 44557788888 455543 332 35899999987643
Q ss_pred cEEEeccccCCeEEEEEeCCCCEEEEEeC-C---CcEEEEECCCCce--eEEeccCCCcEEEEEEcCCCCcEEEEEcCCC
Q 014934 283 FVSKLSGHKSEVCGLKWSYDNRELASGGN-D---NRLFVWNQHSTQP--VLKYCEHTAAVKAIAWSPHLHGLLASGGGTA 356 (415)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spdg~~lasg~~-d---g~I~iwd~~~~~~--~~~~~~h~~~V~~l~~sp~~~~llasggg~~ 356 (415)
....+..+....... |+++|..|+..++ + +.|.++|+.++.. ...+..|...+. .|++++..|+++.. .
T Consensus 272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~--~ 346 (693)
T 3iuj_A 272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM--V 346 (693)
T ss_dssp CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE--E
T ss_pred ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE--E
Confidence 345556666555555 6677776655443 2 5799999988754 345666766665 89999987777664 4
Q ss_pred CC--eEEEEECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEec--CCCcEEEEECCCCc
Q 014934 357 DR--CIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGY--SQNQIIVWRYPTMS 412 (415)
Q Consensus 357 d~--~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~--~dg~I~vw~~~s~~ 412 (415)
++ .|++||+..+ ....+. ....+..+.+++++..|+.+..+ .-+.|..||+.+.+
T Consensus 347 ~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 347 DATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp TTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 44 6899998854 445554 33457788889999888774322 12789999987654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.8e-10 Score=104.18 Aligned_cols=223 Identities=11% Similarity=0.113 Sum_probs=148.6
Q ss_pred ceeEeecCC-Cc-EEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSS-HN-VLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~-~~-~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
......|++ ++ ++.++ .++.|+.|+. +++..... .+...+.+++++++|+++++...++.|.+|+.. ++....
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~--~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLL--DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL 121 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEE--ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEe--CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE
Confidence 456789998 55 56666 4689999998 55543333 345678999999999966655556789999986 543222
Q ss_pred ec---CC-CccEEEEEee--CCEEEE----EeC-------------CCcEEEEECCCCCccEEEeccccCCeEEEEEeCC
Q 014934 246 ME---GH-RLRVGALAWS--SSLLSS----GSR-------------DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD 302 (415)
Q Consensus 246 l~---~h-~~~V~~l~~~--~~~l~s----gs~-------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 302 (415)
.. +. ...+.+++++ +.++++ |.. .+.|+.+|..++. ... +. ......+++|+||
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-~~~-~~-~~~~p~gl~~spd 198 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-LQR-MA-DLDHPNGLAFSPD 198 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC-CEE-EE-EESSEEEEEECTT
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc-EEE-Ee-cCCCCcceEEcCC
Confidence 21 11 1235567777 456664 332 2567788876554 222 22 4456789999999
Q ss_pred CCEEEEEeCC------CcEEEEECCCCceeE---Ee-ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE
Q 014934 303 NRELASGGND------NRLFVWNQHSTQPVL---KY-CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS 372 (415)
Q Consensus 303 g~~lasg~~d------g~I~iwd~~~~~~~~---~~-~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~ 372 (415)
++.|+.+... +.|.+||+..+. +. .+ .........+++.++|+ ++++. .+ .|.+||. .++.+.
T Consensus 199 g~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~---~~-gv~~~~~-~g~~~~ 271 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSS---GT-GVCVFDS-DGQLLG 271 (305)
T ss_dssp SSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECC---SS-EEEEECT-TSCEEE
T ss_pred CCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEec---CC-cEEEECC-CCCEEE
Confidence 9988877665 789999987553 21 11 11234456789999997 66644 23 4999998 678888
Q ss_pred EeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 373 CMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 373 ~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
.+.....+.+++|+++++.|..+ .. +.|..+++
T Consensus 272 ~~~~~~~~~~~~f~~d~~~L~it--~~-~~l~~~~~ 304 (305)
T 3dr2_A 272 HIPTPGTASNCTFDQAQQRLFIT--GG-PCLWMLPL 304 (305)
T ss_dssp EEECSSCCCEEEECTTSCEEEEE--ET-TEEEEEEC
T ss_pred EEECCCceeEEEEeCCCCEEEEE--cC-CeEEEEEC
Confidence 88766678999999999888874 23 34554443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.29 E-value=5.9e-10 Score=104.17 Aligned_cols=196 Identities=9% Similarity=0.067 Sum_probs=138.6
Q ss_pred CCCeEEEEEcCCCCeEEE-------EECCCcEEEEECCCCeeeEEec----CCCccEEEEEeeC--CEEEEEeCCCcEEE
Q 014934 208 DDSVCSVGWANRNTHLAV-------GTSHGKVQIWDASRCKRVRTME----GHRLRVGALAWSS--SLLSSGSRDKSILQ 274 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~-------g~~dg~V~iwd~~~~~~~~~l~----~h~~~V~~l~~~~--~~l~sgs~dg~I~i 274 (415)
-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.++++++ ..|+.++..+.|.+
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~ 96 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence 346789999999987777 5778899999988776543222 2446788999974 46666666668999
Q ss_pred EECCCCCccEEEe-cc-----ccCCeEEEEEeCCCCEEEEEeCC---------------CcEEEEECCCCceeEEeccCC
Q 014934 275 RDIRAQEDFVSKL-SG-----HKSEVCGLKWSYDNRELASGGND---------------NRLFVWNQHSTQPVLKYCEHT 333 (415)
Q Consensus 275 wd~~~~~~~~~~~-~~-----h~~~V~~l~~spdg~~lasg~~d---------------g~I~iwd~~~~~~~~~~~~h~ 333 (415)
||.. +. ...+ .. ....+.+++++++|+++++...+ +.|..||.. ++... +..+.
T Consensus 97 ~d~~-g~--~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~ 171 (314)
T 1pjx_A 97 VQTD-GT--FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAF 171 (314)
T ss_dssp EETT-SC--EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEE
T ss_pred EeCC-CC--EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCC
Confidence 9988 44 2333 11 12458899999999988877655 578888876 54433 33444
Q ss_pred CcEEEEEEc----CCCCcEEEEEcCCCCCeEEEEECC-CCcE-----EEEeeCC--CCEEEEEECCCCCeEEEEEecCCC
Q 014934 334 AAVKAIAWS----PHLHGLLASGGGTADRCIRFWNTT-TNTH-----LSCMDTG--SQVCNLVWSKNVNELVSTHGYSQN 401 (415)
Q Consensus 334 ~~V~~l~~s----p~~~~llasggg~~d~~I~iwd~~-t~~~-----~~~~~~~--~~V~~l~~s~~~~~l~s~~g~~dg 401 (415)
.....++|+ |+++.++++.. .++.|.+||+. +++. +..+... ..+..++++++|+.+++ ...++
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~--~~~~~ 247 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA--NWGSS 247 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE--EETTT
T ss_pred CCcceEEEecccCCCCCEEEEEEC--CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEE--EcCCC
Confidence 567889999 99876777765 57899999986 4542 2222222 45788999999988877 44578
Q ss_pred cEEEEECCCCc
Q 014934 402 QIIVWRYPTMS 412 (415)
Q Consensus 402 ~I~vw~~~s~~ 412 (415)
.|.+|+..+++
T Consensus 248 ~i~~~d~~~g~ 258 (314)
T 1pjx_A 248 HIEVFGPDGGQ 258 (314)
T ss_dssp EEEEECTTCBS
T ss_pred EEEEEcCCCCc
Confidence 99999987543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-10 Score=119.15 Aligned_cols=217 Identities=12% Similarity=0.040 Sum_probs=138.4
Q ss_pred eEEEEECC---CCCeEEeEec-----CCCCCeEEEEEcCCCCeEEEEECC-----CcEEEEECCCCeeeEEecCCCccEE
Q 014934 188 CVYLWNAC---SSKVTKLCDL-----GIDDSVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCKRVRTMEGHRLRVG 254 (415)
Q Consensus 188 ~V~iwd~~---~~~~~~~~~~-----~~~~~V~~v~~sp~g~~la~g~~d-----g~V~iwd~~~~~~~~~l~~h~~~V~ 254 (415)
.|++.+.. .++...++.. ++...+.+++|||||++||.+..+ ..|++||+.+++.+.... +...+.
T Consensus 134 ~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~ 212 (741)
T 1yr2_A 134 QLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFS 212 (741)
T ss_dssp EEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESC
T ss_pred EEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceec
Confidence 35555554 4554444321 223368899999999999988654 359999999988754311 222235
Q ss_pred EEEeeC-CEEEEEeCCCc--------------EEEEECCCCCcc-EEEec--cccCCeEEEEEeCCCCEEEEEeCCC---
Q 014934 255 ALAWSS-SLLSSGSRDKS--------------ILQRDIRAQEDF-VSKLS--GHKSEVCGLKWSYDNRELASGGNDN--- 313 (415)
Q Consensus 255 ~l~~~~-~~l~sgs~dg~--------------I~iwd~~~~~~~-~~~~~--~h~~~V~~l~~spdg~~lasg~~dg--- 313 (415)
.++|++ +.|+.++.++. |++|++.++... ...+. .+...+.++.|+|||++|+..+.++
T Consensus 213 ~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 292 (741)
T 1yr2_A 213 GLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDP 292 (741)
T ss_dssp CCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCS
T ss_pred cEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCC
Confidence 788985 57777776654 899999776521 22222 3334588999999999998877543
Q ss_pred --cEEEEECCCC--ceeEEeccCCCcEEEEEEcCCCCcEEEEEcC-CCCCeEEEEECCCC--cEEEEeeCC-CCEEEEEE
Q 014934 314 --RLFVWNQHST--QPVLKYCEHTAAVKAIAWSPHLHGLLASGGG-TADRCIRFWNTTTN--THLSCMDTG-SQVCNLVW 385 (415)
Q Consensus 314 --~I~iwd~~~~--~~~~~~~~h~~~V~~l~~sp~~~~llasggg-~~d~~I~iwd~~t~--~~~~~~~~~-~~V~~l~~ 385 (415)
.|++||+.++ +....+..+...+.... +|++..+++.... ..++.|.+||+.++ +....+.+. ..+..+.|
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~ 371 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGI 371 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEE
T ss_pred cceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEE
Confidence 8999999877 42455656665555554 4888877766531 12567999999885 333333333 34667788
Q ss_pred CCCCCeEEEEEecCCCcEEEEECC
Q 014934 386 SKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 386 s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+ ++..+++ ...++..+||.+.
T Consensus 372 ~-~~~lv~~--~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 372 A-GNRLFAS--YIHDAKSQVLAFD 392 (741)
T ss_dssp E-BTEEEEE--EEETTEEEEEEEE
T ss_pred E-CCEEEEE--EEECCEEEEEEEe
Confidence 7 4444444 4567777666553
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-09 Score=105.26 Aligned_cols=196 Identities=8% Similarity=-0.047 Sum_probs=138.3
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCC--cEEEEECCCCCccE
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDK--SILQRDIRAQEDFV 284 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg--~I~iwd~~~~~~~~ 284 (415)
.....|+|+++|+++++...++.|++||..++........... .. ++|+ ++.|+++..++ .|.++|...... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 4688999999999777777778999999988776655544322 23 7777 56888888766 788998876542 2
Q ss_pred EEe----ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEE----eccCCCcE-E-EEEEcCCCCcEEEEEcC
Q 014934 285 SKL----SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK----YCEHTAAV-K-AIAWSPHLHGLLASGGG 354 (415)
Q Consensus 285 ~~~----~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~----~~~h~~~V-~-~l~~sp~~~~llasggg 354 (415)
..+ ......+.+++++|++..|..+..++.|+.||..++..... ..++...- . .++|+|++..|+++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~- 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ- 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET-
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC-
Confidence 233 22456788999999555555577788999999987754322 22222222 3 8999997666888876
Q ss_pred CCCCeEEEEECCCCcEEEEeeCC---------------CCEEEEEECCCCCeEEEEEec-CCCcEEEEECCCCc
Q 014934 355 TADRCIRFWNTTTNTHLSCMDTG---------------SQVCNLVWSKNVNELVSTHGY-SQNQIIVWRYPTMS 412 (415)
Q Consensus 355 ~~d~~I~iwd~~t~~~~~~~~~~---------------~~V~~l~~s~~~~~l~s~~g~-~dg~I~vw~~~s~~ 412 (415)
..+.|+.|+.... ........ .....++++++|+.+++ .. .++.|+.|++++++
T Consensus 287 -~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva--d~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 287 -NLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV--DGFKGYCLRKLDILDGY 356 (409)
T ss_dssp -TTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE--ETTTTCEEEEEETTTTE
T ss_pred -CCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE--eCCCCCEEEEEECCCCE
Confidence 6889999997643 22222221 34789999999996666 56 78899999976653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.5e-09 Score=95.26 Aligned_cols=205 Identities=12% Similarity=0.076 Sum_probs=146.7
Q ss_pred CeEEeEecCCCCCeEEEEEcCCCCeEEEEEC---CCcEEEEECCCCeeeEEecCC-CccEEEEEeeCCEEEEEe-CCCcE
Q 014934 198 KVTKLCDLGIDDSVCSVGWANRNTHLAVGTS---HGKVQIWDASRCKRVRTMEGH-RLRVGALAWSSSLLSSGS-RDKSI 272 (415)
Q Consensus 198 ~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~---dg~V~iwd~~~~~~~~~l~~h-~~~V~~l~~~~~~l~sgs-~dg~I 272 (415)
+++..+..+.......+.|+++|. |.+++. ++.|.++|+.+++.+..+.-. ......+++.++.|+.+. .++.+
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v 88 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEE
T ss_pred eEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEE
Confidence 344555434334578999999874 555442 578999999999988886522 223345777776655554 67899
Q ss_pred EEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-----CCcEEEEEEcCCCCc
Q 014934 273 LQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH-----TAAVKAIAWSPHLHG 347 (415)
Q Consensus 273 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~ 347 (415)
.++|..+.+ .+..+.....+ +..+++||+.|+++..++.|.++|..+.+.+..+.-- -..++.+.|. ++ .
T Consensus 89 ~viD~~t~~-v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~ 163 (266)
T 2iwa_A 89 FIYDRRTLS-NIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-E 163 (266)
T ss_dssp EEEETTTTE-EEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred EEEECCCCc-EEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-E
Confidence 999999876 45555422122 2345568887777777899999999998887776522 1246788888 55 4
Q ss_pred EEEEEcCCCCCeEEEEECCCCcEEEEeeCC--------------CCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 348 LLASGGGTADRCIRFWNTTTNTHLSCMDTG--------------SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 348 llasggg~~d~~I~iwd~~t~~~~~~~~~~--------------~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+++... .++.|.+.|..+++.+..++.+ ....+++|+++++.|+++ |...+.|.+.++...
T Consensus 164 lyvn~~--~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT-gk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIW--QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT-GKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEET--TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE-ETTCSEEEEEEEEEC
T ss_pred EEEecC--CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE-CCCCCeEEEEEEecc
Confidence 777775 6889999999999999998753 357899999999888876 556778888887543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=119.43 Aligned_cols=199 Identities=12% Similarity=0.070 Sum_probs=117.2
Q ss_pred cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCcc-E-EEE
Q 014934 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLR-V-GAL 256 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~-V-~~l 256 (415)
.+++.+.++.|+.||..+|+....+.. +.+.+..+..++..+++++.||.|..||..+++.+..+..+... + ...
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp 87 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASP 87 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCS
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCc
Confidence 444555689999999999998877763 45555556677888888889999999999998877666543211 1 011
Q ss_pred Ee-eCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCc
Q 014934 257 AW-SSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAA 335 (415)
Q Consensus 257 ~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~ 335 (415)
.. .+..+++|+.|+.|+.||.++++. +..+..+. ...++|++..+++++.|+.|+.||.++++.+.++..+.
T Consensus 88 ~~~~~~~v~~g~~dg~v~a~D~~tG~~-~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-- 160 (369)
T 2hz6_A 88 CRSSDGILYMGKKQDIWYVIDLLTGEK-QQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-- 160 (369)
T ss_dssp CC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--
T ss_pred eEecCCEEEEEeCCCEEEEEECCCCcE-EEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--
Confidence 11 356788888999999999998873 44444332 23456788899999999999999999998877664321
Q ss_pred EEEEEEcCCC---CcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEE-EEECCCCC
Q 014934 336 VKAIAWSPHL---HGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCN-LVWSKNVN 390 (415)
Q Consensus 336 V~~l~~sp~~---~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~-l~~s~~~~ 390 (415)
....++.++. ..+++.+ .|+.|+.||..+|+.+......+++.. ..++.++.
T Consensus 161 ~~~~~~~~~~~~~~~v~~~~---~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 161 YAASLPEDDVDYKMSHFVSN---GDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp ECCBCCCCCTTCCCCEEEEE---TSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred ccCccccCCccccceEEEEC---CCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 1223334321 3355543 699999999999999988887777654 44555664
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.18 E-value=2.8e-09 Score=99.58 Aligned_cols=184 Identities=10% Similarity=0.029 Sum_probs=129.3
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecC---CCCCeEEEEEcCCCCeEEEEECC---------CcEEEE
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLG---IDDSVCSVGWANRNTHLAVGTSH---------GKVQIW 235 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~---~~~~V~~v~~sp~g~~la~g~~d---------g~V~iw 235 (415)
.+.++.+++ +++ .++.++.|++||..+++...+.... ....+..++++|+|+++++.... ..-.||
T Consensus 55 ~~~~i~~~~dG~l-~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~ 133 (297)
T 3g4e_A 55 PVSSVALRQSGGY-VATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALY 133 (297)
T ss_dssp CEEEEEEBTTSSE-EEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEE
T ss_pred ceEEEEECCCCCE-EEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEE
Confidence 477899998 564 4445789999999988876665432 12357899999999966644321 234555
Q ss_pred ECCCCeeeEEecCCCccEEEEEee--CCEE-EEEeCCCcEEEEECC--CCCc----cEEEeccccCCeEEEEEeCCCCEE
Q 014934 236 DASRCKRVRTMEGHRLRVGALAWS--SSLL-SSGSRDKSILQRDIR--AQED----FVSKLSGHKSEVCGLKWSYDNREL 306 (415)
Q Consensus 236 d~~~~~~~~~l~~h~~~V~~l~~~--~~~l-~sgs~dg~I~iwd~~--~~~~----~~~~~~~h~~~V~~l~~spdg~~l 306 (415)
.+.....+..+..+......++|+ ++.| ++.+.++.|.+||+. ++.. ....+..+.....+++++++|++.
T Consensus 134 ~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 134 SLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLW 213 (297)
T ss_dssp EECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEE
T ss_pred EEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEE
Confidence 554322222233334456789998 3445 556668899999974 3321 122223344568899999999988
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEc-CCCCcEEEEEc
Q 014934 307 ASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS-PHLHGLLASGG 353 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s-p~~~~llasgg 353 (415)
++....+.|.+||..+++.+..+..+...+++++|. |+++.|+++..
T Consensus 214 va~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 214 VACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 888888899999999999998888787889999998 88888888775
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-09 Score=103.44 Aligned_cols=223 Identities=10% Similarity=0.037 Sum_probs=144.5
Q ss_pred ceeEeecCC-CcEEEEEc---CCeEEEEECCCCCeEEeEe-----cCCCCCeEEEEEcCCCCeEEEEEC-----CCcEEE
Q 014934 169 YLNLVDWSS-HNVLAVGL---GNCVYLWNACSSKVTKLCD-----LGIDDSVCSVGWANRNTHLAVGTS-----HGKVQI 234 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~---d~~V~iwd~~~~~~~~~~~-----~~~~~~V~~v~~sp~g~~la~g~~-----dg~V~i 234 (415)
....+++++ ++++++.. ++.+.||.+.++++...-. ..+-..+.+|+++++|+++++-.. ++.|.+
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~ 97 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA 97 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE
Confidence 467888887 66766642 3324444443554331110 123467999999999886665443 578999
Q ss_pred EECCCCeeeEEecC------CCccEEEEEee--CCEE-EEEe---CCCcEEEEECCCCCccEEEeccc------------
Q 014934 235 WDASRCKRVRTMEG------HRLRVGALAWS--SSLL-SSGS---RDKSILQRDIRAQEDFVSKLSGH------------ 290 (415)
Q Consensus 235 wd~~~~~~~~~l~~------h~~~V~~l~~~--~~~l-~sgs---~dg~I~iwd~~~~~~~~~~~~~h------------ 290 (415)
||+.+++.+..+.. +...+..++++ +..+ ++.. .++.|.+||+.++. ....+.+|
T Consensus 98 ~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-~~r~~~~~~~~~~~~~~~~~ 176 (343)
T 2qe8_A 98 WDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-AARVLQGYPGIAPEDIDLVI 176 (343)
T ss_dssp EETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-EEEECTTCTTTSCCSCCCEE
T ss_pred EECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-EEEEecCCCcccccccceeE
Confidence 99999987766642 22356788887 3454 4444 57899999998665 33333322
Q ss_pred -----------------cCCeEEEEEeCCCCEEEEEeCCC-cEEEEECC---CCc-----ee--EEeccCCCcEEEEEEc
Q 014934 291 -----------------KSEVCGLKWSYDNRELASGGNDN-RLFVWNQH---STQ-----PV--LKYCEHTAAVKAIAWS 342 (415)
Q Consensus 291 -----------------~~~V~~l~~spdg~~lasg~~dg-~I~iwd~~---~~~-----~~--~~~~~h~~~V~~l~~s 342 (415)
...+.+|+|+|+|+.|+++..++ .|+.++.. .+. .. ....++......++++
T Consensus 177 ~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d 256 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISID 256 (343)
T ss_dssp TTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEEC
T ss_pred CCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEEC
Confidence 12368899999999888887665 56555532 111 00 0111344456679999
Q ss_pred CCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC--CCCEEEEEECCCCCeEEEE
Q 014934 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--GSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 343 p~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~--~~~V~~l~~s~~~~~l~s~ 395 (415)
++|. ++++.. .++.|.+||..+|+....... ...+.+++|.++++.++++
T Consensus 257 ~~G~-l~va~~--~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~ 308 (343)
T 2qe8_A 257 KDHN-IYVGDL--AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDC 308 (343)
T ss_dssp TTCC-EEEEEG--GGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEE
T ss_pred CCCC-EEEEcc--CCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEe
Confidence 9986 777765 689999999866764333332 4568999999998877774
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=7.2e-10 Score=106.90 Aligned_cols=233 Identities=8% Similarity=-0.039 Sum_probs=154.9
Q ss_pred EeecCC-CcEEEEEc-----------CCeEEEEECCCCCeEEeEecCC------CCCeEEEEEcCCCCeEEEEEC--CCc
Q 014934 172 LVDWSS-HNVLAVGL-----------GNCVYLWNACSSKVTKLCDLGI------DDSVCSVGWANRNTHLAVGTS--HGK 231 (415)
Q Consensus 172 ~l~ws~-~~~la~~~-----------d~~V~iwd~~~~~~~~~~~~~~------~~~V~~v~~sp~g~~la~g~~--dg~ 231 (415)
.+.++| +..+.++. ++.|.+||..+++....+.++. ......+.++|||++|+++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 577888 55555553 5789999999999988886541 134678999999999999875 456
Q ss_pred EEE--EECCCCeeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCC----CCccEE----EeccccCCeEEEEEe
Q 014934 232 VQI--WDASRCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRA----QEDFVS----KLSGHKSEVCGLKWS 300 (415)
Q Consensus 232 V~i--wd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~----~~~~~~----~~~~h~~~V~~l~~s 300 (415)
|.+ +|..+ +..+... +. ..+... ...+++.+.||.+.+.|+.. ..+... .+.....+. . .
T Consensus 149 v~V~~iD~~t---v~~i~v~-~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~ 219 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSA-SC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-A 219 (368)
T ss_dssp EEEEETTTEE---EEEEECS-SC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-E
T ss_pred EEEEEEchhh---ceEEECC-Cc-eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-c
Confidence 888 99877 3444311 11 112222 35666777899998899876 221111 011112233 3 6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCc--eeEEecc-------CC---CcEEEEEEcCCCCcEEEEEc-C-CC----CCeEEE
Q 014934 301 YDNRELASGGNDNRLFVWNQHSTQ--PVLKYCE-------HT---AAVKAIAWSPHLHGLLASGG-G-TA----DRCIRF 362 (415)
Q Consensus 301 pdg~~lasg~~dg~I~iwd~~~~~--~~~~~~~-------h~---~~V~~l~~sp~~~~llasgg-g-~~----d~~I~i 362 (415)
+++..++..+. +.|.+.|+.+.. .+..+.- +. .....++++|+++.++++.. . .. +..+.+
T Consensus 220 ~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~V 298 (368)
T 1mda_H 220 NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298 (368)
T ss_dssp TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEE
Confidence 67777766667 999999987543 2222210 00 11122689999998887642 0 00 234569
Q ss_pred EECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 363 wd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+|+.+++.+..+..+....++.|+++|+.++.+.+..++.|.++|..+++.+
T Consensus 299 iD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 299 VTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp EESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred EECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 9999999999998777899999999999766654435899999999988643
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-09 Score=114.51 Aligned_cols=199 Identities=13% Similarity=0.134 Sum_probs=134.1
Q ss_pred CCCCeEEEEEcCCCCeEEEEEC-----CCcEEEEECCCCeeeEEecCCCccEEEEEee-CCEEEEEeCCCc---------
Q 014934 207 IDDSVCSVGWANRNTHLAVGTS-----HGKVQIWDASRCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKS--------- 271 (415)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~g~~-----dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~--------- 271 (415)
+...+..++|||||++||.+.. ...|++||+.+++.+.... +......++|+ ++.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWLGNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEETTTEEEEEESSCCC-------C
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEeCCCEEEEEEecCcccccccccC
Confidence 3456888999999999986543 2469999999988654311 11112456676 677888777743
Q ss_pred ----EEEEECCCCCcc-EEEe--cc-ccCCeEEEEEeCCCCEEEEEe----CCCcEEEEECCCCc-eeEEeccCCCcEEE
Q 014934 272 ----ILQRDIRAQEDF-VSKL--SG-HKSEVCGLKWSYDNRELASGG----NDNRLFVWNQHSTQ-PVLKYCEHTAAVKA 338 (415)
Q Consensus 272 ----I~iwd~~~~~~~-~~~~--~~-h~~~V~~l~~spdg~~lasg~----~dg~I~iwd~~~~~-~~~~~~~h~~~V~~ 338 (415)
|++|++.+.... ...+ .. |...+.++.|+|||++|+... .++.|+++|+.++. ....+..+......
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~ 285 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS 285 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence 999999876532 2222 23 444578899999999886543 23589999998764 45566667766665
Q ss_pred EEEcCCCCcEEEEEcC-CCCCeEEEEECCCCcE---EEEeeCCCCEEEEEECCCCCeEEEEEecCCC--cEEEEECCC
Q 014934 339 IAWSPHLHGLLASGGG-TADRCIRFWNTTTNTH---LSCMDTGSQVCNLVWSKNVNELVSTHGYSQN--QIIVWRYPT 410 (415)
Q Consensus 339 l~~sp~~~~llasggg-~~d~~I~iwd~~t~~~---~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg--~I~vw~~~s 410 (415)
. |++++..+++.... .....|..+|+.++.. ...+.+...+. .|+++++.|+.+. ..++ .|.+|++..
T Consensus 286 ~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~-~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 286 L-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEY-MVDATARVEQFDYEG 359 (693)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEE-EETTEEEEEEECTTS
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEE-EECCeeEEEEEECCC
Confidence 5 67777777776641 1246899999988754 23334444444 8999999988752 3444 688888764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-07 Score=86.39 Aligned_cols=227 Identities=6% Similarity=-0.046 Sum_probs=146.9
Q ss_pred cEEEEEcCCeEEEEECCCCCeE-----EeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCeeeEEecCCCcc
Q 014934 179 NVLAVGLGNCVYLWNACSSKVT-----KLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVRTMEGHRLR 252 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~~~-----~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~~~~l~~h~~~ 252 (415)
.+|..+..+.|+.+++...... .++. .....+.+++|++++..|.++. .++.|..++.........+......
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeec-CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 3455555568999998765432 1221 1124578999999766565554 5678999998765443334333356
Q ss_pred EEEEEee--CCEEE-EEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC---CCcEEEEECCCCcee
Q 014934 253 VGALAWS--SSLLS-SGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN---DNRLFVWNQHSTQPV 326 (415)
Q Consensus 253 V~~l~~~--~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~---dg~I~iwd~~~~~~~ 326 (415)
...++++ +..|+ +-...+.|.++++..... ............+++++|++..|..+.. .+.|..+++.... .
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~ 158 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-R 158 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-C
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-c
Confidence 7888887 34444 445567899999875432 2222222246789999997666555443 4689888876433 2
Q ss_pred EEe-ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEE
Q 014934 327 LKY-CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (415)
Q Consensus 327 ~~~-~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~v 405 (415)
..+ .........++++|++..|+++.. ..+.|.++|.........+.......+++.. +..|..+ ....+.|.+
T Consensus 159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva-~~~~~~v~~ 233 (267)
T 1npe_A 159 RILAQDNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-DWKTNSVIA 233 (267)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-ETTTTEEEE
T ss_pred EEEEECCCCCCcEEEEcCCCCEEEEEEC--CCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEE-ECCCCeEEE
Confidence 222 233356789999998887888876 6789999999865544444444556677764 4555554 456789999
Q ss_pred EECCCCcc
Q 014934 406 WRYPTMSK 413 (415)
Q Consensus 406 w~~~s~~~ 413 (415)
++..+++.
T Consensus 234 ~d~~~g~~ 241 (267)
T 1npe_A 234 MDLAISKE 241 (267)
T ss_dssp EETTTTEE
T ss_pred EeCCCCCc
Confidence 99887653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.4e-08 Score=89.72 Aligned_cols=194 Identities=10% Similarity=0.000 Sum_probs=141.8
Q ss_pred ceeEeecCCCcEEEEE-c---CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCeee
Q 014934 169 YLNLVDWSSHNVLAVG-L---GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRV 243 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~-~---d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~~ 243 (415)
+...+.|+++..|.++ . ++.|.++|..++++.....++.......+++. |+.|.+++ .++.|.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 4678889983344444 2 47999999999999988876543344455554 55665555 5789999999999999
Q ss_pred EEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecccc-----CCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 014934 244 RTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK-----SEVCGLKWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~spdg~~lasg~~dg~I~iw 318 (415)
.++......-..++++++.|+++..++.|.++|..+.+. ...+.-.. ..+..+.|. +|..++....++.|.+.
T Consensus 100 ~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v-~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 100 KNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKL-IKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp EEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcE-EEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 888632122345777877777777789999999988763 44433211 246788888 77666666678999999
Q ss_pred ECCCCceeEEeccC-------------CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC
Q 014934 319 NQHSTQPVLKYCEH-------------TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (415)
Q Consensus 319 d~~~~~~~~~~~~h-------------~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~ 368 (415)
|..+++.+..+.-. ......|+|+|+++.+++++. ....|.+.++...
T Consensus 178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk--~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK--LWPKLFEIKLHLV 238 (266)
T ss_dssp ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET--TCSEEEEEEEEEC
T ss_pred ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC--CCCeEEEEEEecc
Confidence 99999988887531 135689999999999999987 7888888887654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.07 E-value=4.1e-08 Score=98.92 Aligned_cols=228 Identities=13% Similarity=0.040 Sum_probs=160.9
Q ss_pred CcEEEEEc--CCeEEEEECCCCCeEEeEecCCCCCeEEEEE-c-CCCCeEEEEE------------------CCCcEEEE
Q 014934 178 HNVLAVGL--GNCVYLWNACSSKVTKLCDLGIDDSVCSVGW-A-NRNTHLAVGT------------------SHGKVQIW 235 (415)
Q Consensus 178 ~~~la~~~--d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~-s-p~g~~la~g~------------------~dg~V~iw 235 (415)
++.|.+.. ++.|.+.|+.+.++.+++.+.....+..+++ + |+++++++++ .++.|.++
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI 180 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 180 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence 34555553 4679999999999988877766667899998 5 9999998884 24579999
Q ss_pred ECCCCeeeEEecC-CCccEEEEEeeCCEEEEEeCCC--------------------------------------cEEEEE
Q 014934 236 DASRCKRVRTMEG-HRLRVGALAWSSSLLSSGSRDK--------------------------------------SILQRD 276 (415)
Q Consensus 236 d~~~~~~~~~l~~-h~~~V~~l~~~~~~l~sgs~dg--------------------------------------~I~iwd 276 (415)
|..+.+.+..+.- ..-.-..+...++++++.+.+. .|.+.|
T Consensus 181 D~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID 260 (595)
T 1fwx_A 181 DADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD 260 (595)
T ss_dssp ETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE
T ss_pred ECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEe
Confidence 9999887776652 1111122222355655555332 477788
Q ss_pred CCC--CCccEEEeccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCCCc------------eeEEeccCCCcEEEEEE
Q 014934 277 IRA--QEDFVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHSTQ------------PVLKYCEHTAAVKAIAW 341 (415)
Q Consensus 277 ~~~--~~~~~~~~~~h~~~V~~l~~spdg~~lasg~-~dg~I~iwd~~~~~------------~~~~~~~h~~~V~~l~~ 341 (415)
.++ +...+..+.. .....++.++|||+++++++ .+++|.++|+.+.+ .+.+. .-......++|
T Consensus 261 ~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF 338 (595)
T 1fwx_A 261 GRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAF 338 (595)
T ss_dssp CSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEE
T ss_pred CcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEE
Confidence 876 3322333332 23567899999999877655 67899999998653 22333 33456789999
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECCC----------CcEEEEeeCCCCEEEE------EECCCCCeEEEEEecCCCcE--
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTTT----------NTHLSCMDTGSQVCNL------VWSKNVNELVSTHGYSQNQI-- 403 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~t----------~~~~~~~~~~~~V~~l------~~s~~~~~l~s~~g~~dg~I-- 403 (415)
+|+| +++++.. .|+.|.+||+.+ .+.+..++.+.+.-.. .+++||++|+++...+...+
T Consensus 339 ~~dG-~aY~t~~--ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 339 DGRG-NAYTSLF--LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp CTTS-EEEEEET--TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred CCCC-eEEEEEe--cCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 9999 7888886 899999999987 6678888877665333 44799999999877774455
Q ss_pred ---------EEEECCC
Q 014934 404 ---------IVWRYPT 410 (415)
Q Consensus 404 ---------~vw~~~s 410 (415)
.++|+..
T Consensus 416 ~gp~~~~~~ql~dis~ 431 (595)
T 1fwx_A 416 VGPLKPENDQLIDISG 431 (595)
T ss_dssp CCSSCCEEEEEEECSS
T ss_pred CCCCCCCcceEEEcCC
Confidence 8899853
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-08 Score=106.84 Aligned_cols=233 Identities=9% Similarity=0.070 Sum_probs=155.0
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecC-CC---CCeEEEEEcCCCCeEEEEEC------CCcEEEEECCCCeeeEEec
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLG-ID---DSVCSVGWANRNTHLAVGTS------HGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~-~~---~~V~~v~~sp~g~~la~g~~------dg~V~iwd~~~~~~~~~l~ 247 (415)
+.+++.+.++.|+.+|..+|+..-.+... .. ..+.+--.. .+..+++++. +|.|..||..+++.+-.+.
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 44555557899999999999988777643 10 112110011 2445666654 6899999999999876664
Q ss_pred CCCcc--------------------------------EEEEEee--CCEEEEEeCCC-------------------cEEE
Q 014934 248 GHRLR--------------------------------VGALAWS--SSLLSSGSRDK-------------------SILQ 274 (415)
Q Consensus 248 ~h~~~--------------------------------V~~l~~~--~~~l~sgs~dg-------------------~I~i 274 (415)
..... ...++++ .+.++.+..++ .|..
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~A 287 (677)
T 1kb0_A 208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA 287 (677)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEE
Confidence 32111 0134554 46788777664 4999
Q ss_pred EECCCCCccEEEec--ccc-------CCeEEEEEeCCC---CEEEEEeCCCcEEEEECCCCceeEEeccCC---------
Q 014934 275 RDIRAQEDFVSKLS--GHK-------SEVCGLKWSYDN---RELASGGNDNRLFVWNQHSTQPVLKYCEHT--------- 333 (415)
Q Consensus 275 wd~~~~~~~~~~~~--~h~-------~~V~~l~~spdg---~~lasg~~dg~I~iwd~~~~~~~~~~~~h~--------- 333 (415)
+|.++++. +-.++ .|. ....-+....+| ..++.++.+|.|+++|..+++.+..+....
T Consensus 288 lD~~TG~~-~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~ 366 (677)
T 1kb0_A 288 LDPDTGKY-KWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK 366 (677)
T ss_dssp ECTTTCCE-EEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred EECCCCCE-EEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence 99998874 33322 121 122223344477 688999999999999999999887764221
Q ss_pred -C-cE------------------------EEEEEcCCCCcEEEEEc--------------C-------------------
Q 014934 334 -A-AV------------------------KAIAWSPHLHGLLASGG--------------G------------------- 354 (415)
Q Consensus 334 -~-~V------------------------~~l~~sp~~~~llasgg--------------g------------------- 354 (415)
+ .+ ..++++|++..+++... |
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 446 (677)
T 1kb0_A 367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF 446 (677)
T ss_dssp TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence 0 01 14678888775554321 0
Q ss_pred -------CCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 355 -------TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 355 -------~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
...+.|..||+.+|+.+..+.++..+.+..+...+..++. |..||.|++||..+++.+
T Consensus 447 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~--g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 447 NAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ--GTADGRLVAYHAATGEKL 511 (677)
T ss_dssp CSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEE
T ss_pred ccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEE--ECCCCcEEEEECCCCcee
Confidence 0127899999999999998887766666667777888877 678999999999998764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.2e-08 Score=94.50 Aligned_cols=215 Identities=13% Similarity=0.064 Sum_probs=145.4
Q ss_pred CcEEEEE--cCCeEEEEECCCC----CeEEeEe---c--C-CCCCeEEEEEcCCCCeEEEEECC------CcEEEEECCC
Q 014934 178 HNVLAVG--LGNCVYLWNACSS----KVTKLCD---L--G-IDDSVCSVGWANRNTHLAVGTSH------GKVQIWDASR 239 (415)
Q Consensus 178 ~~~la~~--~d~~V~iwd~~~~----~~~~~~~---~--~-~~~~V~~v~~sp~g~~la~g~~d------g~V~iwd~~~ 239 (415)
.+.|.+. .++.|+++|..+. ++.+.++ + . .......+...|+| .++++..+ |.|.++|..+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 4555554 3578999999765 5555552 1 0 11245667888999 66666555 7899999999
Q ss_pred CeeeEEecCCCc---cEEEEEee--CCEEEEEe-------------------CCCcEEEEECCCCCccEEEeccc--cCC
Q 014934 240 CKRVRTMEGHRL---RVGALAWS--SSLLSSGS-------------------RDKSILQRDIRAQEDFVSKLSGH--KSE 293 (415)
Q Consensus 240 ~~~~~~l~~h~~---~V~~l~~~--~~~l~sgs-------------------~dg~I~iwd~~~~~~~~~~~~~h--~~~ 293 (415)
.+.+..+..... .-..+.|+ .+.+++.. .+.+|.+||+.+++ .+..+..- ...
T Consensus 174 ~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~tI~vg~~g~~ 252 (462)
T 2ece_A 174 FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHSLTLGEENRM 252 (462)
T ss_dssp CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEEEESCTTEEE
T ss_pred CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeEEecCCCCCc
Confidence 999988863211 22346666 35677664 36889999999864 45555431 233
Q ss_pred eEEEEE--eCCCCEEEEEe------CCCcEEEEECCCCce--eEEe--ccC----------------CCcEEEEEEcCCC
Q 014934 294 VCGLKW--SYDNRELASGG------NDNRLFVWNQHSTQP--VLKY--CEH----------------TAAVKAIAWSPHL 345 (415)
Q Consensus 294 V~~l~~--spdg~~lasg~------~dg~I~iwd~~~~~~--~~~~--~~h----------------~~~V~~l~~sp~~ 345 (415)
...+.| +|+++++.+++ .++.|.+|....++. .+.+ ... ......|.++|++
T Consensus 253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG 332 (462)
T 2ece_A 253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD 332 (462)
T ss_dssp EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence 455656 99999988776 466888776554421 1111 110 2346789999999
Q ss_pred CcEEEEEcCCCCCeEEEEECCC---CcEEEEeeCCC---------------CEEEEEECCCCCeEEEEE
Q 014934 346 HGLLASGGGTADRCIRFWNTTT---NTHLSCMDTGS---------------QVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 346 ~~llasggg~~d~~I~iwd~~t---~~~~~~~~~~~---------------~V~~l~~s~~~~~l~s~~ 396 (415)
++|+++.- ..+.|.+||+.. .+.+..+..++ .-..+.+++||++|+++.
T Consensus 333 rfLYVSnr--g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 333 KFLYLSLW--GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEEEEET--TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CEEEEEeC--CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999886 578999999863 45666776652 247799999999999964
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-07 Score=90.60 Aligned_cols=224 Identities=11% Similarity=0.034 Sum_probs=142.5
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCC--------CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCC
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGI--------DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~--------~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h 249 (415)
+.+++.+.++.|+.+|..+++..-...... ...+.+ ....++..+++++.+|.|..+|..+++.+-.....
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 344444457899999999999876665432 122322 22234667888999999999999999877665543
Q ss_pred CccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCe-----EEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 250 RLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV-----CGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 250 ~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
..........+..++.++.++.|..+|..+++. +.......... ...... +..++.+..++.|..+|..+++
T Consensus 133 ~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~ 209 (376)
T 3q7m_A 133 GEALSRPVVSDGLVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQ 209 (376)
T ss_dssp SCCCSCCEEETTEEEEECTTSEEEEEETTTCCE-EEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCC
T ss_pred CceEcCCEEECCEEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCc
Confidence 322222334477899999999999999988873 33332211110 122222 4567888889999999999999
Q ss_pred eeEEeccCCCc-------EEEEEEcC--CCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 325 PVLKYCEHTAA-------VKAIAWSP--HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 325 ~~~~~~~h~~~-------V~~l~~sp--~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
.+.++...... +..+.-.| .+..+++ ++ .++.|..+|..+|+.+....... ...+.. ++..+++
T Consensus 210 ~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~-~~--~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~--~~~~l~~- 282 (376)
T 3q7m_A 210 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFA-LA--YNGNLTALDLRSGQIMWKRELGS-VNDFIV--DGNRIYL- 282 (376)
T ss_dssp EEEEEECCC-----------CCCCCCEEETTEEEE-EC--TTSCEEEEETTTCCEEEEECCCC-EEEEEE--ETTEEEE-
T ss_pred EEEEEecccCCCCcccccccccCCCcEEECCEEEE-Ee--cCcEEEEEECCCCcEEeeccCCC-CCCceE--ECCEEEE-
Confidence 88776532110 00000111 1233444 33 68999999999999887765433 344443 3555666
Q ss_pred EecCCCcEEEEECCCCcc
Q 014934 396 HGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 396 ~g~~dg~I~vw~~~s~~~ 413 (415)
+..++.|..+|..+++.
T Consensus 283 -~~~~g~l~~~d~~tG~~ 299 (376)
T 3q7m_A 283 -VDQNDRVMALTIDGGVT 299 (376)
T ss_dssp -EETTCCEEEEETTTCCE
T ss_pred -EcCCCeEEEEECCCCcE
Confidence 45678899999887764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-08 Score=106.17 Aligned_cols=234 Identities=14% Similarity=0.107 Sum_probs=150.5
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecC-CCCCeEEEEEcC--CCCeEEEEE------CCCcEEEEECCCCeeeEEecC
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLG-IDDSVCSVGWAN--RNTHLAVGT------SHGKVQIWDASRCKRVRTMEG 248 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~-~~~~V~~v~~sp--~g~~la~g~------~dg~V~iwd~~~~~~~~~l~~ 248 (415)
+.+++.+.++.|+.+|..+|+..-..... +......+..+| .+..+++++ .+|.|..||..+++.+-.+..
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 201 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYT 201 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecc
Confidence 44444456899999999999987666543 211111111122 133455554 368999999999998765541
Q ss_pred C--C-c----------------------------cEEEEEee--CCEEEEEeCCCc-------------------EEEEE
Q 014934 249 H--R-L----------------------------RVGALAWS--SSLLSSGSRDKS-------------------ILQRD 276 (415)
Q Consensus 249 h--~-~----------------------------~V~~l~~~--~~~l~sgs~dg~-------------------I~iwd 276 (415)
. . . ....++++ .++++.++.++. |..+|
T Consensus 202 ~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD 281 (689)
T 1yiq_A 202 VPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVN 281 (689)
T ss_dssp SCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEE
T ss_pred cCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEE
Confidence 1 0 0 00134555 478888887763 99999
Q ss_pred CCCCCccEEEecc--cc-------CCeEEEEEeCCCC---EEEEEeCCCcEEEEECCCCceeEEeccCC-CcE-------
Q 014934 277 IRAQEDFVSKLSG--HK-------SEVCGLKWSYDNR---ELASGGNDNRLFVWNQHSTQPVLKYCEHT-AAV------- 336 (415)
Q Consensus 277 ~~~~~~~~~~~~~--h~-------~~V~~l~~spdg~---~lasg~~dg~I~iwd~~~~~~~~~~~~h~-~~V------- 336 (415)
.++++. +-.+.. |. .++.......+|+ .++.++.+|.|+++|.++++++....... ...
T Consensus 282 ~~TG~~-~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~ 360 (689)
T 1yiq_A 282 ADTGEY-VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT 360 (689)
T ss_dssp TTTCCE-EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred ccCCce-eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence 999884 333322 21 1222222333565 78899999999999999999875432110 000
Q ss_pred -------------------------------EEEEEcCCCCcEEEEEc------------------------C-------
Q 014934 337 -------------------------------KAIAWSPHLHGLLASGG------------------------G------- 354 (415)
Q Consensus 337 -------------------------------~~l~~sp~~~~llasgg------------------------g------- 354 (415)
..++++|+...+++... |
T Consensus 361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 440 (689)
T 1yiq_A 361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP 440 (689)
T ss_dssp TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence 12678887764444311 0
Q ss_pred -----------CCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 355 -----------TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 355 -----------~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
..++.|+.||+.+|+.+..+..+..+..-.+...+..++. |+.||.|+.||..+++.+
T Consensus 441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFE--GSADGRVIAYAADTGEKL 509 (689)
T ss_dssp SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEE
T ss_pred cccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEE--ECCCCcEEEEECCCCccc
Confidence 0147899999999999988887665555566667777777 788999999999998865
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=6.3e-08 Score=91.71 Aligned_cols=180 Identities=9% Similarity=0.068 Sum_probs=124.3
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCC---CCCeEEEEEcCCCCeEEEEEC------CCcEEEEECC
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGI---DDSVCSVGWANRNTHLAVGTS------HGKVQIWDAS 238 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~---~~~V~~v~~sp~g~~la~g~~------dg~V~iwd~~ 238 (415)
.+.++.|++ ++++++. +..|++||..+++...+..... ...+.+++++++|+++++... .+.|..++
T Consensus 91 ~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-- 167 (326)
T 2ghs_A 91 MGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-- 167 (326)
T ss_dssp CEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--
T ss_pred cceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--
Confidence 477889988 5555554 5679999999988766544221 235889999999986654432 24565666
Q ss_pred CCeeeEEecCCCccEEEEEee--CCEE-EEEeCCCcEEEEECC--CC-C----ccEEEeccccCCeEEEEEeCCCCEEEE
Q 014934 239 RCKRVRTMEGHRLRVGALAWS--SSLL-SSGSRDKSILQRDIR--AQ-E----DFVSKLSGHKSEVCGLKWSYDNRELAS 308 (415)
Q Consensus 239 ~~~~~~~l~~h~~~V~~l~~~--~~~l-~sgs~dg~I~iwd~~--~~-~----~~~~~~~~h~~~V~~l~~spdg~~las 308 (415)
+++.. .+..+......++|+ ++.| ++.+.++.|.+||+. ++ . .....+......+.+++++++|+++++
T Consensus 168 ~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva 246 (326)
T 2ghs_A 168 KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA 246 (326)
T ss_dssp TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE
T ss_pred CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE
Confidence 45433 232233456788998 3455 444567899999986 44 2 112223333456788999999998888
Q ss_pred EeCCCcEEEEECCCCceeEEeccCCCcEEEEEEc-CCCCcEEEEEc
Q 014934 309 GGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS-PHLHGLLASGG 353 (415)
Q Consensus 309 g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s-p~~~~llasgg 353 (415)
...++.|.+||. +++.+..+..+...+.+++|. +++..|+++..
T Consensus 247 ~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 247 RWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 777789999998 677777777777789999998 88877777664
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-11 Score=116.84 Aligned_cols=181 Identities=14% Similarity=0.048 Sum_probs=100.2
Q ss_pred CCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccC-CeE
Q 014934 219 RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKS-EVC 295 (415)
Q Consensus 219 ~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-~V~ 295 (415)
++..+++++.||.|..||..+++.+-.+.. ..+.+..+. +..+++++.||.|+.||..+++. +..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCccccc
Confidence 578899999999999999999998877765 333322222 45777778999999999987763 333332211 110
Q ss_pred -EEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 296 -GLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 296 -~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
+..+. ++..+++|+.|+.|+.||..+++.+.++..+. ...++|++..+++ ++ .|+.|+.||..+|+.+..+
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~-~~--~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYL-GR--TEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC--------------------------EEE-EE--EEEEEECCCSSSSSCCCEE
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEE-Ee--cCCEEEEEECCCCCEEEeE
Confidence 01111 35577888889999999999999988876543 2456676664444 44 6899999999999877665
Q ss_pred eCCCCEEEEEECCCC---CeEEEEEecCCCcEEEEECCCCcc
Q 014934 375 DTGSQVCNLVWSKNV---NELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 375 ~~~~~V~~l~~s~~~---~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.... .....++.+. ..+++ +..+|.|..||..+++.
T Consensus 157 ~~~~-~~~~~~~~~~~~~~~v~~--~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 157 TYFD-YAASLPEDDVDYKMSHFV--SNGDGLVVTVDSESGDV 195 (369)
T ss_dssp EEEE-ECCBCCCCCTTCCCCEEE--EETSCEEEEECTTTCCE
T ss_pred eccc-ccCccccCCccccceEEE--ECCCCEEEEEECCCCcE
Confidence 4221 1223333332 44555 56789999999988764
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-07 Score=86.49 Aligned_cols=188 Identities=13% Similarity=0.099 Sum_probs=133.5
Q ss_pred eEEeEecCCCCCeEEEEEcCCCCeEEEEECCC--cEEEEECCCCeeeEEecCCCcc-EEEEEeeCCEEEEE-eCCCcEEE
Q 014934 199 VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG--KVQIWDASRCKRVRTMEGHRLR-VGALAWSSSLLSSG-SRDKSILQ 274 (415)
Q Consensus 199 ~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg--~V~iwd~~~~~~~~~l~~h~~~-V~~l~~~~~~l~sg-s~dg~I~i 274 (415)
+++.+..+.......+.|+ ++.+..+.+.+| .|+++|+++++.+..+...... .-.++..++.|... -.++.+.+
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 4455543445556899998 666666666665 8999999999988887643332 23466666655555 46889999
Q ss_pred EECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccC--C---CcEEEEEEcCCCCcEE
Q 014934 275 RDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH--T---AAVKAIAWSPHLHGLL 349 (415)
Q Consensus 275 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h--~---~~V~~l~~sp~~~~ll 349 (415)
+|..+.+ .+..+... .+=.++ ++|++.|+.+..++.|.++|..+.+.+.++.-. . ..++.+.|. +|. ++
T Consensus 112 ~D~~t~~-~~~ti~~~-~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-ly 185 (262)
T 3nol_A 112 WNIRNLR-QVRSFNYD-GEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IF 185 (262)
T ss_dssp EETTTCC-EEEEEECS-SCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EE
T ss_pred EECccCc-EEEEEECC-CCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EE
Confidence 9999887 45555432 222333 456777777666889999999999888776532 1 345667887 554 77
Q ss_pred EEEcCCCCCeEEEEECCCCcEEEEeeCC-------------CCEEEEEECCCCCeEEEE
Q 014934 350 ASGGGTADRCIRFWNTTTNTHLSCMDTG-------------SQVCNLVWSKNVNELVST 395 (415)
Q Consensus 350 asggg~~d~~I~iwd~~t~~~~~~~~~~-------------~~V~~l~~s~~~~~l~s~ 395 (415)
+..- .+..|.+.|..+|+.+..++.. .-.++++|+|+++.|.++
T Consensus 186 an~w--~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT 242 (262)
T 3nol_A 186 ANVW--QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT 242 (262)
T ss_dssp EEET--TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred EEEc--cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence 7664 6889999999999999988742 346889999998888876
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.00 E-value=4.7e-08 Score=94.37 Aligned_cols=212 Identities=10% Similarity=0.048 Sum_probs=144.3
Q ss_pred eeEeecCC-CcEEEEEc---CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC-CeeeE
Q 014934 170 LNLVDWSS-HNVLAVGL---GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-CKRVR 244 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~---d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~-~~~~~ 244 (415)
...+.++| ++.|.++. ++.|.++|+.++++...+... + + ...+....+.+++.+.||.+.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~--g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC--C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEE
Confidence 34578888 67666663 578999999999998888643 2 1 222333445677778899999999876 55432
Q ss_pred EecCCC----ccEE-EEEee--CCEEEEEeCCCcEEEEECCCCCc-cEEEec---------c-ccCCeEEEEEeCCCCEE
Q 014934 245 TMEGHR----LRVG-ALAWS--SSLLSSGSRDKSILQRDIRAQED-FVSKLS---------G-HKSEVCGLKWSYDNREL 306 (415)
Q Consensus 245 ~l~~h~----~~V~-~l~~~--~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~---------~-h~~~V~~l~~spdg~~l 306 (415)
....+. ..+. ...|. ...++..+.+|.|++.|+..... ....+. + .......++++++++.|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~l 294 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI 294 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred eecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeE
Confidence 221111 1221 13453 23444466789999999976541 111111 0 12234457889999988
Q ss_pred EEEeC----------CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCC-cEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 307 ASGGN----------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH-GLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 307 asg~~----------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
..... .+.|.++|+.+++.+.++.. ...+..|+++++++ .|+++.. .++.|.++|..+++.+.++.
T Consensus 295 yV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~--~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 295 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALST--GDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEET--TTTEEEEEETTTCCEEEEEC
T ss_pred EEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcC--CCCeEEEEECCCCcEEEEec
Confidence 87643 25799999999999888753 33678999999997 4566555 68999999999999999998
Q ss_pred CCCCEEEEEECCC
Q 014934 376 TGSQVCNLVWSKN 388 (415)
Q Consensus 376 ~~~~V~~l~~s~~ 388 (415)
....-..+.+++|
T Consensus 372 ~~~~p~~l~~s~d 384 (386)
T 3sjl_D 372 QLGHGPQVITTAD 384 (386)
T ss_dssp CCCSSCCEEEECC
T ss_pred CCCCCceeEECCc
Confidence 8777777777766
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.5e-07 Score=87.62 Aligned_cols=202 Identities=10% Similarity=-0.040 Sum_probs=131.8
Q ss_pred eEeecCC-CcEEEEEc---CCeEEEEECCCCCeEEe-EecCCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCCCeeeE
Q 014934 171 NLVDWSS-HNVLAVGL---GNCVYLWNACSSKVTKL-CDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 171 ~~l~ws~-~~~la~~~---d~~V~iwd~~~~~~~~~-~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
..+.|+| ++.|.++. ++.|.++| .++++... +..+ . ++.+.|++ ..+++.+.||.+.++|. +++.+.
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~--~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP--T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC--c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 4678999 77777663 36899999 99988766 5422 2 24455655 45566678999999999 777663
Q ss_pred Eec-----CCCccE-EEEEee--CCEEEEEeCCCcEEEEECCCCCc-cEEEecc----------ccCCeEEEEEeCCCCE
Q 014934 245 TME-----GHRLRV-GALAWS--SSLLSSGSRDKSILQRDIRAQED-FVSKLSG----------HKSEVCGLKWSYDNRE 305 (415)
Q Consensus 245 ~l~-----~h~~~V-~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~----------h~~~V~~l~~spdg~~ 305 (415)
... ....++ ....+. +..++..+..+.+.+.|+..... ....+.- .......+.++|+++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 321 111111 112222 33333334678999999975531 1122110 1122444788999988
Q ss_pred EEEEeC----------CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE-e
Q 014934 306 LASGGN----------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC-M 374 (415)
Q Consensus 306 lasg~~----------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~-~ 374 (415)
+.++.. ++.|.++|+.+.+.+.++. -.....+++|+|+|+.+++++.. .++.|.+||+.+++.+.. +
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~-~~~~V~ViD~~t~~vv~~i~ 358 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSA-GTEVLHIYDAGAGDQDQSTV 358 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcC-CCCeEEEEECCCCCEEeeec
Confidence 877643 3579999999999988884 34468999999999844444431 489999999999999988 4
Q ss_pred eCCCCEE
Q 014934 375 DTGSQVC 381 (415)
Q Consensus 375 ~~~~~V~ 381 (415)
..+....
T Consensus 359 ~vG~~P~ 365 (373)
T 2mad_H 359 ELGSGPQ 365 (373)
T ss_pred CCCCCCc
Confidence 5554433
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-07 Score=99.41 Aligned_cols=206 Identities=15% Similarity=0.106 Sum_probs=140.9
Q ss_pred CCeEEEEECCCCCeEEeEecCCC------------------------------CCeEEEEEcCCCCeEEEEECCCc----
Q 014934 186 GNCVYLWNACSSKVTKLCDLGID------------------------------DSVCSVGWANRNTHLAVGTSHGK---- 231 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~------------------------------~~V~~v~~sp~g~~la~g~~dg~---- 231 (415)
++.|+.||..+|+..-.+..... .....+++.|++.++++++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 57899999999998766542110 01125778888899999988764
Q ss_pred ---------------EEEEECCCCeeeEEecC--CC-------cc--EEEEEeeCC---EEEEEeCCCcEEEEECCCCCc
Q 014934 232 ---------------VQIWDASRCKRVRTMEG--HR-------LR--VGALAWSSS---LLSSGSRDKSILQRDIRAQED 282 (415)
Q Consensus 232 ---------------V~iwd~~~~~~~~~l~~--h~-------~~--V~~l~~~~~---~l~sgs~dg~I~iwd~~~~~~ 282 (415)
|..||..+++.+-.+.. |. .. +..+.+.+. .++.++.+|.++++|.++++.
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 99999999998876653 21 11 223334443 788999999999999998873
Q ss_pred cEEEeccc---------------------------c-----------CCeEEEEEeCCCCEEEEEeC-------------
Q 014934 283 FVSKLSGH---------------------------K-----------SEVCGLKWSYDNRELASGGN------------- 311 (415)
Q Consensus 283 ~~~~~~~h---------------------------~-----------~~V~~l~~spdg~~lasg~~------------- 311 (415)
....-... . ..-..++++|+..+|++..+
T Consensus 342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~ 421 (689)
T 1yiq_A 342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP 421 (689)
T ss_dssp EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence 21111000 0 01123788998888887632
Q ss_pred --------------------------------CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCe
Q 014934 312 --------------------------------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC 359 (415)
Q Consensus 312 --------------------------------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~ 359 (415)
+|.|..||+.+++.+.++..+.. +..-.+...+. +++.++ .|+.
T Consensus 422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagg-lvf~gt--~dg~ 497 (689)
T 1yiq_A 422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGN-LVFEGS--ADGR 497 (689)
T ss_dssp CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTT-EEEEEC--TTSE
T ss_pred cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceECCC-EEEEEC--CCCc
Confidence 37799999999999988865542 33334455554 666665 8999
Q ss_pred EEEEECCCCcEEEEeeCCCCE--EEEEECCCCCeEEEE
Q 014934 360 IRFWNTTTNTHLSCMDTGSQV--CNLVWSKNVNELVST 395 (415)
Q Consensus 360 I~iwd~~t~~~~~~~~~~~~V--~~l~~s~~~~~l~s~ 395 (415)
|+.||..+|+.+..+..+..+ .-+.|..+|+..++.
T Consensus 498 l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~ 535 (689)
T 1yiq_A 498 VIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTF 535 (689)
T ss_dssp EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEE
Confidence 999999999999988755332 347778888866553
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.5e-07 Score=81.51 Aligned_cols=193 Identities=12% Similarity=0.069 Sum_probs=135.3
Q ss_pred CceeccCCCCCCCcceeEeecCCCcEEEEEcC---CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCC
Q 014934 155 PYKILDAPALQDDFYLNLVDWSSHNVLAVGLG---NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHG 230 (415)
Q Consensus 155 p~~~ld~~~l~~~~~i~~l~ws~~~~la~~~d---~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg 230 (415)
.++++..-.....-+...+.|+++.+..++.. +.|+.+|+.++++.....+.. ..........++.|... -.++
T Consensus 8 ~~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~--~~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 8 GYRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPP--PYFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp CEEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESSSS
T ss_pred ceEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCC--CcceeEEEEeCCEEEEEEeeCC
Confidence 34454442233345677888888654444432 489999999999998887653 23333333345555554 4588
Q ss_pred cEEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecccc-----CCeEEEEEeCCCCE
Q 014934 231 KVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK-----SEVCGLKWSYDNRE 305 (415)
Q Consensus 231 ~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~spdg~~ 305 (415)
.+.+||..+.+.+.++.... .-..+++.+..|+.+..++.|.++|..+.+ .+..+.-.. ..++.|.|. +|+.
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~-~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQ-QVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEEETTTTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECCcCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCe-EEEEEEEccCCcccccceeeEEe-CCEE
Confidence 99999999999999887433 345777877777777778999999999876 344443211 345677776 7777
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeccC-------------CCcEEEEEEcCCCCcEEEEE
Q 014934 306 LASGGNDNRLFVWNQHSTQPVLKYCEH-------------TAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 306 lasg~~dg~I~iwd~~~~~~~~~~~~h-------------~~~V~~l~~sp~~~~llasg 352 (415)
+|..-.++.|.+.|.++++.+..+.-. ..-.+.|||+|+++.|+++|
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 766667889999999999988877521 12468999999999899988
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.7e-08 Score=91.75 Aligned_cols=197 Identities=9% Similarity=-0.055 Sum_probs=129.0
Q ss_pred CCeEEEEEcCCCCeEEEEE--CCCcEEEEECCCCeeeEEec-------CCCccEEEEEeeC-CEEEEEeC------CCcE
Q 014934 209 DSVCSVGWANRNTHLAVGT--SHGKVQIWDASRCKRVRTME-------GHRLRVGALAWSS-SLLSSGSR------DKSI 272 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~--~dg~V~iwd~~~~~~~~~l~-------~h~~~V~~l~~~~-~~l~sgs~------dg~I 272 (415)
..+..|+++++|+.+++.. .+|.++||.+.+++. ..+. .|...+.++++++ ..|+.... ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6899999999999888764 234355555545543 3231 3456899999984 44555443 5789
Q ss_pred EEEECCCCCccEEEecc------ccCCeEEEEEeCCCCEE-EEEe---CCCcEEEEECCCCceeEEeccCC---------
Q 014934 273 LQRDIRAQEDFVSKLSG------HKSEVCGLKWSYDNREL-ASGG---NDNRLFVWNQHSTQPVLKYCEHT--------- 333 (415)
Q Consensus 273 ~iwd~~~~~~~~~~~~~------h~~~V~~l~~spdg~~l-asg~---~dg~I~iwd~~~~~~~~~~~~h~--------- 333 (415)
.+||+.+++ .+..+.. +...+..+++++++..+ ++.. .++.|.+||+.+++....+.+|.
T Consensus 96 ~~~d~~tg~-~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQ-LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTE-EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCe-EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 999998776 3343332 22356899999865454 5544 57899999998887665553321
Q ss_pred --------------------CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC---CCc--------EEEEeeCCCCEEE
Q 014934 334 --------------------AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT---TNT--------HLSCMDTGSQVCN 382 (415)
Q Consensus 334 --------------------~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~---t~~--------~~~~~~~~~~V~~ 382 (415)
..+..|+|+|+++.|+++.. ....|..++.. .+. .+...........
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg 252 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM--HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG 252 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES--SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC--CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence 23688999999987777654 34456555532 111 0112222335667
Q ss_pred EEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 383 LVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 383 l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
++++++|+.+++ ...++.|.+|+..++
T Consensus 253 ia~d~~G~l~va--~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 253 ISIDKDHNIYVG--DLAHSAIGVITSADR 279 (343)
T ss_dssp EEECTTCCEEEE--EGGGTEEEEEETTTT
T ss_pred EEECCCCCEEEE--ccCCCeEEEEECCCC
Confidence 999999988777 667889999997443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-07 Score=97.43 Aligned_cols=219 Identities=11% Similarity=0.110 Sum_probs=150.1
Q ss_pred CCeEEEEECCCCCeEEeEecCCCC-------------------------------CeEEEEEcCCCCeEEEEECCC----
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDD-------------------------------SVCSVGWANRNTHLAVGTSHG---- 230 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~-------------------------------~V~~v~~sp~g~~la~g~~dg---- 230 (415)
++.|+.||..+|+..-.+...... ....+++++++..+.+++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 588999999999987766542211 113567888899898887764
Q ss_pred ---------------cEEEEECCCCeeeEEecC--CC--------cc-EEEEEeeC---CEEEEEeCCCcEEEEECCCCC
Q 014934 231 ---------------KVQIWDASRCKRVRTMEG--HR--------LR-VGALAWSS---SLLSSGSRDKSILQRDIRAQE 281 (415)
Q Consensus 231 ---------------~V~iwd~~~~~~~~~l~~--h~--------~~-V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~ 281 (415)
.|..+|..+++.+-.+.. |. .+ +..+...+ ..++.++.+|.|+++|.++++
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 499999999998766543 21 11 22233344 678999999999999999887
Q ss_pred ccEEEecccc-----------CCe------------------------EEEEEeCCCCEEEEEeCC--------------
Q 014934 282 DFVSKLSGHK-----------SEV------------------------CGLKWSYDNRELASGGND-------------- 312 (415)
Q Consensus 282 ~~~~~~~~h~-----------~~V------------------------~~l~~spdg~~lasg~~d-------------- 312 (415)
. +....... ..+ ..++++|++.++++...+
T Consensus 349 ~-l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 349 F-ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp E-EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred E-eccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 3 33222110 001 157889998888876432
Q ss_pred -----------------------------CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 313 -----------------------------NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 313 -----------------------------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
|.|..||+.+++.+.++. +...+....+...+. +++.++ .|+.+++|
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~-~v~~g~--~dg~l~a~ 503 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGN-VVFQGT--ADGRLVAY 503 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTT-EEEEEC--TTSEEEEE
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCC-EEEEEC--CCCcEEEE
Confidence 789999999999988875 333444455566665 455554 89999999
Q ss_pred ECCCCcEEEEeeCCCC--EEEEEECCCCCeEEEE-Eec--------------CCCcEEEEECC
Q 014934 364 NTTTNTHLSCMDTGSQ--VCNLVWSKNVNELVST-HGY--------------SQNQIIVWRYP 409 (415)
Q Consensus 364 d~~t~~~~~~~~~~~~--V~~l~~s~~~~~l~s~-~g~--------------~dg~I~vw~~~ 409 (415)
|..+|+.+..+..+.. ..-+.|..+|+.+++. .|. ..+.+.+|.++
T Consensus 504 D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 504 HAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp ETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred ECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 9999999999875443 3346677888755543 231 03678888876
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.4e-07 Score=84.17 Aligned_cols=189 Identities=10% Similarity=0.019 Sum_probs=134.0
Q ss_pred CeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCc-cEEEEEeeC-CEEEEEeCCCcEEEE
Q 014934 198 KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL-RVGALAWSS-SLLSSGSRDKSILQR 275 (415)
Q Consensus 198 ~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~-~V~~l~~~~-~~l~sgs~dg~I~iw 275 (415)
+++..+..+.......+.|+ ++.+..+.+.+|.|+++|+++++.+..+ -... ..-.++..+ .+.+..-.++.+.+|
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~ 121 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTW 121 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEE
T ss_pred EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEE
Confidence 34455544445667889987 4556666677889999999999888776 2222 123466665 455555578999999
Q ss_pred ECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC-----CcEEEEEEcCCCCcEEE
Q 014934 276 DIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHT-----AAVKAIAWSPHLHGLLA 350 (415)
Q Consensus 276 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~-----~~V~~l~~sp~~~~lla 350 (415)
|..+.+ .+..+.. ..+-.+++ +|++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +| .+++
T Consensus 122 D~~Tl~-~~~ti~~-~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lya 195 (268)
T 3nok_A 122 SGMPPQ-RERTTRY-SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYA 195 (268)
T ss_dssp ETTTTE-EEEEEEC-SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEE
T ss_pred ECCcCc-EEEEEeC-CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEE
Confidence 999887 4555543 23334444 567888887779999999999998887765321 245778887 55 4777
Q ss_pred EEcCCCCCeEEEEECCCCcEEEEeeCC--------------CCEEEEEECCCCCeEEEEEe
Q 014934 351 SGGGTADRCIRFWNTTTNTHLSCMDTG--------------SQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 351 sggg~~d~~I~iwd~~t~~~~~~~~~~--------------~~V~~l~~s~~~~~l~s~~g 397 (415)
..- .+..|.+.|..+|+.+..++.. .-.++++|+|+++.|+++ |
T Consensus 196 nvw--~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT-G 253 (268)
T 3nok_A 196 NIW--HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT-G 253 (268)
T ss_dssp EET--TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE-E
T ss_pred EEC--CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe-C
Confidence 664 6789999999999999988732 346889999988777775 5
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-07 Score=88.61 Aligned_cols=188 Identities=12% Similarity=0.053 Sum_probs=127.7
Q ss_pred CCCeEEEEEcCCCC-eEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccE
Q 014934 208 DDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFV 284 (415)
Q Consensus 208 ~~~V~~v~~sp~g~-~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~ 284 (415)
.....+..|+++|+ +++++..++.|..|+. +++ +..+..+...+..++++ ++++++...++.|.+||.. +. .
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~--~ 118 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ--A 118 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--E
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC--E
Confidence 45678899999998 6666777889999998 444 34555566778899998 4555554456789999986 33 2
Q ss_pred EEeccc-----cCCeEEEEEeCCCCEEEE----EeC-------------CCcEEEEECCCCceeEEeccCCCcEEEEEEc
Q 014934 285 SKLSGH-----KSEVCGLKWSYDNRELAS----GGN-------------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342 (415)
Q Consensus 285 ~~~~~h-----~~~V~~l~~spdg~~las----g~~-------------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 342 (415)
..+..+ ...+..++++++|+++++ |.. .+.|+.||..+++..... .......++|+
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~s 196 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFS 196 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEEC
T ss_pred EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEc
Confidence 222211 134678999999998886 332 256888888777654333 44567889999
Q ss_pred CCCCcEEEEEcCCC-----CCeEEEEECCCCcEEEE---ee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 343 PHLHGLLASGGGTA-----DRCIRFWNTTTNTHLSC---MD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 343 p~~~~llasggg~~-----d~~I~iwd~~t~~~~~~---~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
|+++.|+++.. . .+.|.+|++..+. +.. +. ......++.++++|+..++ .. +.|.+|+..
T Consensus 197 pdg~~lyv~~~--~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~---~~-~gv~~~~~~ 266 (305)
T 3dr2_A 197 PDEQTLYVSQT--PEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSS---SG-TGVCVFDSD 266 (305)
T ss_dssp TTSSEEEEEEC--CC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEEC---CS-SEEEEECTT
T ss_pred CCCCEEEEEec--CCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEe---cC-CcEEEECCC
Confidence 99987777654 2 3789999987654 211 11 1334567899999995554 23 358888863
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.93 E-value=4.3e-07 Score=87.29 Aligned_cols=223 Identities=12% Similarity=-0.006 Sum_probs=143.5
Q ss_pred CCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccE--
Q 014934 176 SSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRV-- 253 (415)
Q Consensus 176 s~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V-- 253 (415)
..+.+++.+.++.|+.+|..+++..-...... ........ .+..+++++.+|.|..+|..+++.+-.+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG-EALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSS-CCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC-ceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee
Confidence 34556666678999999999999876665432 11111111 24578888999999999999998776665332211
Q ss_pred ---EEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecccc--C--CeEE---EEEeC--CCCEEEEEeCCCcEEEEECC
Q 014934 254 ---GALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK--S--EVCG---LKWSY--DNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 254 ---~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~--~--~V~~---l~~sp--dg~~lasg~~dg~I~iwd~~ 321 (415)
......+..++.++.++.|..+|..+++. +....... . ++.. +...| .+..+..++.++.|..+|..
T Consensus 179 ~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 179 RGESAPTTAFGAAVVGGDNGRVSAVLMEQGQM-IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR 257 (376)
T ss_dssp CCCCCCEEETTEEEECCTTTEEEEEETTTCCE-EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred cCCCCcEEECCEEEEEcCCCEEEEEECCCCcE-EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence 22233467888899999999999988873 32222110 0 0000 00111 35677888889999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CC-CCEEEEEECCCCCeEEEEEecC
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TG-SQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~-~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
+++.+..... .....+... +..+++.. .++.|..+|..+|+.+.... .. ..+..... .+..|++ +..
T Consensus 258 tG~~~w~~~~--~~~~~~~~~--~~~l~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v--~~~ 326 (376)
T 3q7m_A 258 SGQIMWKREL--GSVNDFIVD--GNRIYLVD---QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVV--GDS 326 (376)
T ss_dssp TCCEEEEECC--CCEEEEEEE--TTEEEEEE---TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEE--ECT
T ss_pred CCcEEeeccC--CCCCCceEE--CCEEEEEc---CCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEE--EeC
Confidence 9998877642 334445443 34466654 58899999999999887765 21 12222222 2456666 667
Q ss_pred CCcEEEEECCCCcc
Q 014934 400 QNQIIVWRYPTMSK 413 (415)
Q Consensus 400 dg~I~vw~~~s~~~ 413 (415)
+|.|.++|..+++.
T Consensus 327 ~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 327 EGYLHWINVEDGRF 340 (376)
T ss_dssp TSEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcE
Confidence 89999999888764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.89 E-value=8.3e-07 Score=79.80 Aligned_cols=189 Identities=11% Similarity=0.045 Sum_probs=131.6
Q ss_pred CeEEeEecCCCCCeEEEEEcCCCCeEEEEECC--CcEEEEECCCCeeeEEecCCCcc-EEEEEeeCCE-EEEEeCCCcEE
Q 014934 198 KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH--GKVQIWDASRCKRVRTMEGHRLR-VGALAWSSSL-LSSGSRDKSIL 273 (415)
Q Consensus 198 ~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d--g~V~iwd~~~~~~~~~l~~h~~~-V~~l~~~~~~-l~sgs~dg~I~ 273 (415)
+++..+..........+.|+. +.+..+.+.. ..|+.+|+.+++.+..+...... --.++..++. ....-.++.+.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence 344555444456788999986 5544544444 48999999999988877633222 2345555554 44555789999
Q ss_pred EEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC-----CcEEEEEEcCCCCcE
Q 014934 274 QRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHT-----AAVKAIAWSPHLHGL 348 (415)
Q Consensus 274 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~-----~~V~~l~~sp~~~~l 348 (415)
++|..+.+ .+..+... .+-.+++ ++++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +|. +
T Consensus 89 v~D~~tl~-~~~ti~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-l 162 (243)
T 3mbr_X 89 VYDLATLT-PRARFRYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-L 162 (243)
T ss_dssp EEETTTTE-EEEEEECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-E
T ss_pred EEECCcCc-EEEEEeCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-E
Confidence 99999887 45555532 2334454 567777777778999999999998887775321 345677776 444 7
Q ss_pred EEEEcCCCCCeEEEEECCCCcEEEEeeCC--------------CCEEEEEECCCCCeEEEE
Q 014934 349 LASGGGTADRCIRFWNTTTNTHLSCMDTG--------------SQVCNLVWSKNVNELVST 395 (415)
Q Consensus 349 lasggg~~d~~I~iwd~~t~~~~~~~~~~--------------~~V~~l~~s~~~~~l~s~ 395 (415)
++..- .+..|.+.|..+|+.+..++.. .-.++++|+|+++.|.++
T Consensus 163 yanvw--~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 163 LANVW--LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp EEEET--TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred EEEEC--CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 77664 5789999999999999988722 246789999998888776
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.8e-07 Score=82.81 Aligned_cols=180 Identities=10% Similarity=0.002 Sum_probs=130.2
Q ss_pred CcceeEeecCCCcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg~V~iwd~~~~~~~~ 244 (415)
.-+...|.|+.+.+..+. .++.|+++|+.++++.... ++..-.--.+++ +++.|... -.++.+.+||..+.+.+.
T Consensus 54 ~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 54 NAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp TCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEE
Confidence 345677788765444444 4578999999999988777 553222233444 45545444 458899999999999999
Q ss_pred EecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecc--cc---CCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 014934 245 TMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSG--HK---SEVCGLKWSYDNRELASGGNDNRLFVWN 319 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~---~~V~~l~~spdg~~lasg~~dg~I~iwd 319 (415)
++... ..-..+++.+..|+.+..++.|.++|..+.+ .+..+.. +. ..++.|.|. +|+++|..-.++.|.+.|
T Consensus 131 ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~-v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vID 207 (268)
T 3nok_A 131 TTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFA-LVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEID 207 (268)
T ss_dssp EEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEEC
T ss_pred EEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCe-EEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEe
Confidence 88743 3346777888888888889999999999877 3444432 21 245678887 787666666788999999
Q ss_pred CCCCceeEEeccC-------------CCcEEEEEEcCCCCcEEEEE
Q 014934 320 QHSTQPVLKYCEH-------------TAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 320 ~~~~~~~~~~~~h-------------~~~V~~l~~sp~~~~llasg 352 (415)
.++++.+..+.-. ..-.+.|||.|+++.|+++|
T Consensus 208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999988777521 13568999999999899988
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-07 Score=87.93 Aligned_cols=216 Identities=10% Similarity=-0.006 Sum_probs=145.5
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEE
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALA 257 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~ 257 (415)
+.+.+.+.++.|+.+|.. ++...... .....+.++...++|. |.+|+.++.|..+|.. ++.+..+......+.++.
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS 183 (330)
T ss_dssp TEEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred CEEEEEecCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence 444444457899999988 77655554 2334566667777776 6668888999999998 776666655555566666
Q ss_pred ee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcE
Q 014934 258 WS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAV 336 (415)
Q Consensus 258 ~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V 336 (415)
.. ...+..++ +.|..+| .++. ...........+.++...++|.+ ..++.++.|..+|. +++.+..+......+
T Consensus 184 ~d~~g~l~v~t--~~l~~~d-~~g~-~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~ 257 (330)
T 3hxj_A 184 IGKDGTIYFGS--DKVYAIN-PDGT-EKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINP-DGTEKWRFKTGKRIE 257 (330)
T ss_dssp ECTTCCEEEES--SSEEEEC-TTSC-EEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECT-TSCEEEEEECSSCCC
T ss_pred EcCCCEEEEEe--CEEEEEC-CCCc-EEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECC-CCCEeEEeeCCCCcc
Confidence 64 45566666 8899999 5554 34444444566888888888754 55666788888884 566666665544444
Q ss_pred EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~-~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
..+...+++. +++.. .++.|..+|. +++.+..+.. ...+.++....+|+..+ |+.+|.+++...+..
T Consensus 258 ~~~~~~~~g~-l~v~t---~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~---gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 258 SSPVIGNTDT-IYFGS---YDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF---GTRNGKFYALFNLEH 325 (330)
T ss_dssp SCCEECTTSC-EEEEC---TTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE---ECTTSCEEEEEC---
T ss_pred ccceEcCCCe-EEEec---CCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE---EcCCCeEEEEecccc
Confidence 5566666664 66533 5788999996 7877776654 34466777778887555 567899998876543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.86 E-value=3.9e-07 Score=82.71 Aligned_cols=193 Identities=16% Similarity=0.203 Sum_probs=133.7
Q ss_pred ceeccCCCCCCCcceeEeecCCCcEEEE-EcCC--eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCc
Q 014934 156 YKILDAPALQDDFYLNLVDWSSHNVLAV-GLGN--CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGK 231 (415)
Q Consensus 156 ~~~ld~~~l~~~~~i~~l~ws~~~~la~-~~d~--~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~ 231 (415)
++++..-.....-+...|.|+.+.+..+ |.++ .|+.+|+.++++.....++. ........++++.|...+ .++.
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK--RYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESSSSE
T ss_pred eEEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCC--ccceeEEEEeCCEEEEEEeeCCE
Confidence 3444332223344567788885433333 3344 89999999999988887653 333333334566666655 4789
Q ss_pred EEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecc----cc-CCeEEEEEeCCCCEE
Q 014934 232 VQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSG----HK-SEVCGLKWSYDNREL 306 (415)
Q Consensus 232 V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~----h~-~~V~~l~~spdg~~l 306 (415)
+.+||..+.+.+.++.... .-..+++.+..|+....++.|.++|..+.+ .+..+.. .. ..++.+.|. +|+++
T Consensus 109 v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~-v~~~I~V~~~g~~~~~lNELe~~-~G~ly 185 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLT-PVRTITVTAHGEELPELNELEWV-DGEIF 185 (262)
T ss_dssp EEEEETTTCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCS-EEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEEECccCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCe-EEEEEEeccCCccccccceeEEE-CCEEE
Confidence 9999999999999887432 335677777777777668889999999877 3444332 11 335567887 78777
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccC------------CCcEEEEEEcCCCCcEEEEEc
Q 014934 307 ASGGNDNRLFVWNQHSTQPVLKYCEH------------TAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~~~~~~~h------------~~~V~~l~~sp~~~~llasgg 353 (415)
|..-.++.|.+.|.++++.+..+... ..-.+.|||+|+++.|+++|-
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 66667889999999999988877532 134589999999998999883
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.86 E-value=3.7e-07 Score=92.05 Aligned_cols=185 Identities=10% Similarity=0.044 Sum_probs=135.4
Q ss_pred CCCeEEEEEC-CCcEEEEECCCCeeeEEecC-CCccEEEEEe----eCCEEEEEeC------------------CCcEEE
Q 014934 219 RNTHLAVGTS-HGKVQIWDASRCKRVRTMEG-HRLRVGALAW----SSSLLSSGSR------------------DKSILQ 274 (415)
Q Consensus 219 ~g~~la~g~~-dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~~----~~~~l~sgs~------------------dg~I~i 274 (415)
||++|.+... ++.|.+.|+.+.++...+.- .......+++ +++++++++. ++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888888765 45699999999998875532 2234667775 2578887752 357899
Q ss_pred EECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC--------------------------------------cEE
Q 014934 275 RDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN--------------------------------------RLF 316 (415)
Q Consensus 275 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg--------------------------------------~I~ 316 (415)
+|..+.+ ....+.-- +....++++|+|+++++.+.+. .|.
T Consensus 180 ID~~t~~-v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWE-VAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTE-EEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCe-EEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 9999876 34443321 2456788999999998887543 367
Q ss_pred EEECCC--Cce-eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc------------EEEEeeCCCCEE
Q 014934 317 VWNQHS--TQP-VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT------------HLSCMDTGSQVC 381 (415)
Q Consensus 317 iwd~~~--~~~-~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~------------~~~~~~~~~~V~ 381 (415)
|.|.++ ++. +..+.. .....++.++|||+++++++. .+..|.++|+.+.+ .+..+..+....
T Consensus 258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~--~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~ 334 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGK--LSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL 334 (595)
T ss_dssp EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECT--TSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEE
T ss_pred EEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCC--CCCeEEEEECcccccccccccCcccceEEEcCCCCCcc
Confidence 777766 444 333322 234567999999999999887 78999999999763 566777888999
Q ss_pred EEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 382 ~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
.++|+++| .+.++ -.-|++|.+|++..
T Consensus 335 h~aF~~dG-~aY~t-~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 335 HTAFDGRG-NAYTS-LFLDSQVVKWNIED 361 (595)
T ss_dssp EEEECTTS-EEEEE-ETTTTEEEEEEHHH
T ss_pred eEEECCCC-eEEEE-EecCCcEEEEEhhH
Confidence 99999999 65555 57899999999875
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=8.5e-06 Score=74.32 Aligned_cols=215 Identities=6% Similarity=-0.046 Sum_probs=141.0
Q ss_pred ceeEeecCC-CcEEEEE--cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCeeeE
Q 014934 169 YLNLVDWSS-HNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVR 244 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~~~ 244 (415)
....++|++ ++.|.++ ..+.|+.++..++....+.. ..-.....+++++++..|.++. ..+.|.++++.......
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC-TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE-CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 356888987 4544444 35799999998766544442 2235789999999766555554 56789999986433222
Q ss_pred EecCCCccEEEEEeeC--CEEEEEeC---CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEE-EeCCCcEEEE
Q 014934 245 TMEGHRLRVGALAWSS--SLLSSGSR---DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELAS-GGNDNRLFVW 318 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~--~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-g~~dg~I~iw 318 (415)
...........+++++ ..|+.+.. .+.|..+++..... ............++++++++..|.. -...+.|.++
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence 2222224568888874 56555554 36888888865432 2222223346789999998776655 4456899999
Q ss_pred ECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCC--CEEEEEECCCCC
Q 014934 319 NQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS--QVCNLVWSKNVN 390 (415)
Q Consensus 319 d~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~--~V~~l~~s~~~~ 390 (415)
|.........+.. ......++.. +..++++.. ..+.|..+|..+++.+..+..+. ...++++.|++.
T Consensus 195 ~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~--~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 195 NPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDW--KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEET--TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred ecCCCceEEEecC-CCCceEEEEe--CCEEEEEEC--CCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 9976543333322 2344566654 456888765 57899999999999998887553 467788877764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-06 Score=84.35 Aligned_cols=220 Identities=15% Similarity=0.178 Sum_probs=144.3
Q ss_pred eEEEEECCC-----CCeEEeEecCC-CCCeEEEEE-----------c--CCCCeEEEE-ECCCcEEEEECCCC----eee
Q 014934 188 CVYLWNACS-----SKVTKLCDLGI-DDSVCSVGW-----------A--NRNTHLAVG-TSHGKVQIWDASRC----KRV 243 (415)
Q Consensus 188 ~V~iwd~~~-----~~~~~~~~~~~-~~~V~~v~~-----------s--p~g~~la~g-~~dg~V~iwd~~~~----~~~ 243 (415)
.|.+.|+.. ++++....+.. .+....+.| + .++++|++. ..++.|.++|+.+. +.+
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 566677765 67777666543 234444555 6 778777664 55788999999765 666
Q ss_pred EEec------C-CCccEEEEEeeC-CEEEEEeCC------CcEEEEECCCCCccEEEeccccC---CeEEEEEeCCCCEE
Q 014934 244 RTME------G-HRLRVGALAWSS-SLLSSGSRD------KSILQRDIRAQEDFVSKLSGHKS---EVCGLKWSYDNREL 306 (415)
Q Consensus 244 ~~l~------~-h~~~V~~l~~~~-~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~h~~---~V~~l~~spdg~~l 306 (415)
.+++ . ....-..+...+ .+++++..+ |.|.++|..+.+ .+..+..... --..+.|+|+++.+
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~-v~~~~~~~~~~~~~~Yd~~~~p~~~~m 202 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFE-PLGKWEIDRGDQYLAYDFWWNLPNEVL 202 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCC-EEEECCSBCTTCCCCCCEEEETTTTEE
T ss_pred eeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCe-EEEEEccCCCCccccceEEECCCCCEE
Confidence 6663 0 111233344442 366665555 789999999887 5666652211 13357889999998
Q ss_pred EEEe-------------------CCCcEEEEECCCCceeEEeccC--CCcEEEEEE--cCCCCcEEEEEc---CCCCCeE
Q 014934 307 ASGG-------------------NDNRLFVWNQHSTQPVLKYCEH--TAAVKAIAW--SPHLHGLLASGG---GTADRCI 360 (415)
Q Consensus 307 asg~-------------------~dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~--sp~~~~llasgg---g~~d~~I 360 (415)
++.. .+++|.+||+.+++.+.++..- ......+.| +|+++++++++. ...++.|
T Consensus 203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V 282 (462)
T 2ece_A 203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSI 282 (462)
T ss_dssp EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEE
T ss_pred EEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceE
Confidence 8874 3689999999998888877542 134455656 999997777652 0035677
Q ss_pred EEEECCCCcE--EEEee--C-----------------CCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 361 RFWNTTTNTH--LSCMD--T-----------------GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 361 ~iwd~~t~~~--~~~~~--~-----------------~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.+|....|+. ++.++ . +.....+.+|+||++|.++. ...+.|.+||+.
T Consensus 283 ~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSn-rg~d~VavfdV~ 351 (462)
T 2ece_A 283 WLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSL-WGIGEVRQYDIS 351 (462)
T ss_dssp EEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEE-TTTTEEEEEECS
T ss_pred EEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEe-CCCCEEEEEEec
Confidence 7766554431 12211 1 24567899999999999874 456899999985
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.4e-07 Score=96.48 Aligned_cols=235 Identities=12% Similarity=0.074 Sum_probs=149.1
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC--CCCeEEEEEC------CCcEEEEECCCCeeeEEecCC
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTS------HGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp--~g~~la~g~~------dg~V~iwd~~~~~~~~~l~~h 249 (415)
+.+++.+.++.|+.+|..+|+..-............+.-+| .+..++++.. +|.|..+|..+++.+-.+...
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 197 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV 197 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred CEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEeccc
Confidence 44455556899999999999987776643211111111111 2345556543 589999999999987666421
Q ss_pred ---Cc----------------------------cEEEEEee--CCEEEEEeCCC-------------------cEEEEEC
Q 014934 250 ---RL----------------------------RVGALAWS--SSLLSSGSRDK-------------------SILQRDI 277 (415)
Q Consensus 250 ---~~----------------------------~V~~l~~~--~~~l~sgs~dg-------------------~I~iwd~ 277 (415)
.. ....++++ .+.++.++.++ .|..+|.
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~ 277 (668)
T 1kv9_A 198 PGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP 277 (668)
T ss_dssp CCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred CCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcC
Confidence 00 00124554 46888887766 3999999
Q ss_pred CCCCccEEEecc-cc-------CCeEEEEEeCCCC---EEEEEeCCCcEEEEECCCCceeEEeccCC-----------C-
Q 014934 278 RAQEDFVSKLSG-HK-------SEVCGLKWSYDNR---ELASGGNDNRLFVWNQHSTQPVLKYCEHT-----------A- 334 (415)
Q Consensus 278 ~~~~~~~~~~~~-h~-------~~V~~l~~spdg~---~lasg~~dg~I~iwd~~~~~~~~~~~~h~-----------~- 334 (415)
++++..-+.-.. |. .+.....+..+|+ .++.++.+|.++++|..+++.+....... .
T Consensus 278 ~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~ 357 (668)
T 1kv9_A 278 DTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGR 357 (668)
T ss_dssp TTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCC
T ss_pred CCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCC
Confidence 998743222222 22 2333333334675 68899999999999999999885443211 0
Q ss_pred cE------------------------EEEEEcCCCCcEEEEE---------------------------------cCCCC
Q 014934 335 AV------------------------KAIAWSPHLHGLLASG---------------------------------GGTAD 357 (415)
Q Consensus 335 ~V------------------------~~l~~sp~~~~llasg---------------------------------gg~~d 357 (415)
.+ ..++++|+...+++.. ....+
T Consensus 358 p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~ 437 (668)
T 1kv9_A 358 PVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVS 437 (668)
T ss_dssp EEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCE
T ss_pred ccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCcc
Confidence 00 0156777665444321 00134
Q ss_pred CeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 358 RCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 358 ~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+.|..||+.+|+.+..+..+..+....+...+..+++ |..|+.|++||..+++.+
T Consensus 438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~--g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ--GTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEE
T ss_pred ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEE--ECCcccchhhhhhcChhh
Confidence 8899999999999988876655555555567777877 778999999999988754
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-05 Score=73.26 Aligned_cols=224 Identities=10% Similarity=-0.061 Sum_probs=142.6
Q ss_pred EEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCCcEEEEECCC----CeeeEEecCCCccEE
Q 014934 180 VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASR----CKRVRTMEGHRLRVG 254 (415)
Q Consensus 180 ~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg~V~iwd~~~----~~~~~~l~~h~~~V~ 254 (415)
+|.++....|+..++.+.+...+.. .-..+.+++|++++..|... ...+.|..+++.. ......+........
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECCCeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 5677777889999999887666553 34678999999876655554 4568899999875 222222332223345
Q ss_pred EEEee--CC-EEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-C-CcEEEEECCCCceeEEe
Q 014934 255 ALAWS--SS-LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-D-NRLFVWNQHSTQPVLKY 329 (415)
Q Consensus 255 ~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-d-g~I~iwd~~~~~~~~~~ 329 (415)
.++++ +. +.++-...+.|.+.|+.... .............+++++|.+..|..+.. . +.|..+++... ....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~ 158 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSL 158 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEE
Confidence 56654 44 44555677899999987543 22223333456789999996666555443 3 68999888543 33333
Q ss_pred -ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC---CCCEEEEEECCCCCeEEEEEecCCCcEEE
Q 014934 330 -CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (415)
Q Consensus 330 -~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~---~~~V~~l~~s~~~~~l~s~~g~~dg~I~v 405 (415)
...-.....|+++|++..|+++-. ..+.|..+|+........+.. .....++++.. + .|..+ ....+.|..
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~D~--~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~-~ly~~-d~~~~~V~~ 233 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-D-KVFWT-DIINEAIFS 233 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-T-EEEEE-ETTTTEEEE
T ss_pred EECCCCCceEEEEeccCCEEEEEEC--CCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-C-EEEEE-ECCCCeEEE
Confidence 233456789999998887888876 678999999975333222222 24467788853 4 44443 456778888
Q ss_pred EECCCCc
Q 014934 406 WRYPTMS 412 (415)
Q Consensus 406 w~~~s~~ 412 (415)
++..+++
T Consensus 234 ~~~~~g~ 240 (316)
T 1ijq_A 234 ANRLTGS 240 (316)
T ss_dssp EETTTCC
T ss_pred EeCCCCc
Confidence 8865543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.80 E-value=8.4e-08 Score=90.00 Aligned_cols=222 Identities=11% Similarity=0.038 Sum_probs=143.2
Q ss_pred eeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCC
Q 014934 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 170 i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h 249 (415)
+..+...++..|.++..+ |+.+|. +++........ ........+. +..|.+|+.+|.|..+|.. ++.......+
T Consensus 62 ~~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~~~~~-~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~ 135 (330)
T 3hxj_A 62 ECRPSIGKDGTIYFGSDK-VYAINP-DGTEKWRFDTK-KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTK 135 (330)
T ss_dssp EECCEETTTTEECCSSCE-EEEECC-CGGGGGGSCC------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECS
T ss_pred ccceEEecCCcEEEecCc-EEEECC-CCcEEEEEECC-CCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCC
Confidence 344455554455555555 888986 55543333211 1122222333 5567888889999999988 7666555544
Q ss_pred CccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 014934 250 RLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 250 ~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~ 328 (415)
...+.++... ...++.++.++.|..+|.. +. ....+......+.++...+++.+++. + +.|..|| .+++.+..
T Consensus 136 ~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~-~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~ 209 (330)
T 3hxj_A 136 KAIYATPIVSEDGTIYVGSNDNYLYAINPD-GT-EKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWN 209 (330)
T ss_dssp SCCCSCCEECTTSCEEEECTTSEEEEECTT-SC-EEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEE
T ss_pred CceeeeeEEcCCCEEEEEcCCCEEEEECCC-CC-EeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEE
Confidence 4455555665 5678888888999999998 54 34444444556777888778875554 4 7899999 78877777
Q ss_pred eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCC-EEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 329 YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ-VCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 329 ~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~-V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
+......+.+++..+++. +++.. .++.|..+| .+++.+..+..... +..+...+++... . ++.+|.|..+|
T Consensus 210 ~~~~~~~~~~~~~~~~g~-l~v~t---~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v--~t~~ggl~~~d 281 (330)
T 3hxj_A 210 FYAGYWTVTRPAISEDGT-IYVTS---LDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDTIY-F--GSYDGHLYAIN 281 (330)
T ss_dssp ECCSSCCCSCCEECTTSC-EEEEE---TTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSCEE-E--ECTTCEEEEEC
T ss_pred EccCCcceeceEECCCCe-EEEEc---CCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCCeEE-E--ecCCCCEEEEC
Confidence 766666788888888875 66544 578888887 46666666654332 3445666666544 4 45677888888
Q ss_pred CCCCc
Q 014934 408 YPTMS 412 (415)
Q Consensus 408 ~~s~~ 412 (415)
. +++
T Consensus 282 ~-~g~ 285 (330)
T 3hxj_A 282 P-DGT 285 (330)
T ss_dssp T-TSC
T ss_pred C-CCc
Confidence 4 443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-05 Score=75.59 Aligned_cols=234 Identities=9% Similarity=-0.058 Sum_probs=149.3
Q ss_pred eEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCCcEEEEECCCCeeeEEecCC
Q 014934 171 NLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 171 ~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg~V~iwd~~~~~~~~~l~~h 249 (415)
.|.+..+..+|.++....|+..++.......+.. ....+..++|.+.+..|... ...+.|..+++........+...
T Consensus 37 ~C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 114 (349)
T 3v64_C 37 SCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 114 (349)
T ss_dssp CEEESSSCCEEEEECBSCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred cccccccCceeEeecccceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence 3555555567777777789999987776655543 34568999999866555554 45778999998765433333322
Q ss_pred CccEEEEEee--C-CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEE-eCC-CcEEEEECCCCc
Q 014934 250 RLRVGALAWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASG-GND-NRLFVWNQHSTQ 324 (415)
Q Consensus 250 ~~~V~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg-~~d-g~I~iwd~~~~~ 324 (415)
......++++ . .++++-...+.|.+.++..... ...+........+++++|.+..|... ... +.|..+++....
T Consensus 115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193 (349)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence 2334455554 3 4555666678899999876542 33333344567899999966555444 444 789999986543
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcE
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I 403 (415)
....+...-.....|+++|++..|+++-. ..+.|..+|+........+. ......++++. .+ .|..+ ....+.|
T Consensus 194 ~~~~~~~~~~~PnGla~d~~~~~lY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~t-d~~~~~V 268 (349)
T 3v64_C 194 RRIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWT-DWHTKSI 268 (349)
T ss_dssp CEESCCSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEE-ETTTTEE
T ss_pred cEEEEECCCCCcceEEEeCCCCEEEEEEC--CCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEe-cCCCCeE
Confidence 32222233456789999998887888876 67899999987544333332 23456778883 33 44443 4567788
Q ss_pred EEEECCCCc
Q 014934 404 IVWRYPTMS 412 (415)
Q Consensus 404 ~vw~~~s~~ 412 (415)
..++-.+++
T Consensus 269 ~~~~~~~G~ 277 (349)
T 3v64_C 269 NSANKFTGK 277 (349)
T ss_dssp EEEETTTCC
T ss_pred EEEEccCCC
Confidence 887754443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-05 Score=77.44 Aligned_cols=233 Identities=9% Similarity=-0.058 Sum_probs=150.2
Q ss_pred EeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCCcEEEEECCCCeeeEEecCCC
Q 014934 172 LVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRCKRVRTMEGHR 250 (415)
Q Consensus 172 ~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg~V~iwd~~~~~~~~~l~~h~ 250 (415)
|.+..+..+|..+....|+.+++.......+.. ....+..++|.+.+..|... ...+.|..+++........+....
T Consensus 81 C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 158 (386)
T 3v65_B 81 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 158 (386)
T ss_dssp EEECSSCCEEEEECBSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred ECCccccceeEeecCccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence 444455567777777889999998877665553 34568999999866555544 457789999987655433333222
Q ss_pred ccEEEEEee--C-CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe-CC-CcEEEEECCCCce
Q 014934 251 LRVGALAWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG-ND-NRLFVWNQHSTQP 325 (415)
Q Consensus 251 ~~V~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~-~d-g~I~iwd~~~~~~ 325 (415)
.....++++ . .++++-...+.|.+.++.... ....+........+|+++|.+..|.... .. +.|..+++.....
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 237 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 237 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc
Confidence 233445554 3 455555667788888887554 2333333345688999999766655544 34 6899999865443
Q ss_pred eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEE
Q 014934 326 VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQII 404 (415)
Q Consensus 326 ~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~ 404 (415)
.......-.....|+|+|++..|+++-. ..+.|..+|+........+. ......++++. .+ .|..+ ....+.|.
T Consensus 238 ~~~~~~~~~~PnGlavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~t-d~~~~~V~ 312 (386)
T 3v65_B 238 RIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWT-DWHTKSIN 312 (386)
T ss_dssp EEEECSSCSCEEEEEEEGGGTEEEEEET--TTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEE-ETTTTEEE
T ss_pred EEEEECCCCCeeeEEEeCCCCEEEEEEC--CCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEe-eCCCCeEE
Confidence 3333334456789999998887888876 67899999987544333333 23456778883 33 44443 45677888
Q ss_pred EEECCCCc
Q 014934 405 VWRYPTMS 412 (415)
Q Consensus 405 vw~~~s~~ 412 (415)
.++-.+++
T Consensus 313 ~~~~~~G~ 320 (386)
T 3v65_B 313 SANKFTGK 320 (386)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 88754443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-05 Score=75.32 Aligned_cols=232 Identities=9% Similarity=0.017 Sum_probs=139.9
Q ss_pred eeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecC------------------CCCCeEEEEEcC-CCCeEEEEEC
Q 014934 170 LNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLG------------------IDDSVCSVGWAN-RNTHLAVGTS 228 (415)
Q Consensus 170 i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~------------------~~~~V~~v~~sp-~g~~la~g~~ 228 (415)
...++|++ ++++.++ .++.|+.|+..+++........ ....+.++++.+ +|+ |.++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 44678887 6655555 5789999998877654433211 013578999998 554 555655
Q ss_pred CCcEEEEECCCCeeeEEec----C-CCccEEEEEeeC--CEEEEEeC------------------CCcEEEEECCCCCcc
Q 014934 229 HGKVQIWDASRCKRVRTME----G-HRLRVGALAWSS--SLLSSGSR------------------DKSILQRDIRAQEDF 283 (415)
Q Consensus 229 dg~V~iwd~~~~~~~~~l~----~-h~~~V~~l~~~~--~~l~sgs~------------------dg~I~iwd~~~~~~~ 283 (415)
.+.|..+|..+++. ..+. + .......+++.+ ..|..+.. ++.|..+|..++.
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-- 176 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE-- 176 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE--
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE--
Confidence 55688888775532 2221 1 112466777764 23433332 3668888876554
Q ss_pred EEEeccccCCeEEEEEeCCCCEEEEE-eCCCcEEEEECCCCc--eeEEeccCCCcEEEEEEcCCCCcEEEEEcC------
Q 014934 284 VSKLSGHKSEVCGLKWSYDNRELASG-GNDNRLFVWNQHSTQ--PVLKYCEHTAAVKAIAWSPHLHGLLASGGG------ 354 (415)
Q Consensus 284 ~~~~~~h~~~V~~l~~spdg~~lasg-~~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~sp~~~~llasggg------ 354 (415)
...+........+|+|+|+|+.|..+ ...+.|.+|++.... ....+....+ ...+++.++|. ++++..+
T Consensus 177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~ 254 (322)
T 2fp8_A 177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNM 254 (322)
T ss_dssp EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSST
T ss_pred EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC-EEEEecCcccccc
Confidence 22222222346789999999866555 556899999987531 1122212223 78899999997 6665431
Q ss_pred --CCCCeEEEEECCCCcEEEEeeCC-----CCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 355 --TADRCIRFWNTTTNTHLSCMDTG-----SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 355 --~~d~~I~iwd~~t~~~~~~~~~~-----~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
...+.|..+|. .|+.+..+... ..++.+++ .+++.+++ ....+.|.++++...
T Consensus 255 ~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~--~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 255 HGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIG--TLFHGSVGILVYDKK 314 (322)
T ss_dssp TSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEE--CSSCSEEEEEEC---
T ss_pred cCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEe--ecCCCceEEEecccc
Confidence 01467888886 47777777532 34666666 34544444 456789999987643
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.71 E-value=9.8e-07 Score=86.46 Aligned_cols=196 Identities=12% Similarity=0.069 Sum_probs=129.2
Q ss_pred eEeecCC-CcEEEEEc---CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCCCeeeEE
Q 014934 171 NLVDWSS-HNVLAVGL---GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 171 ~~l~ws~-~~~la~~~---d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
..+.++| ++.|.++. ++.|.+.|..+.++...+..+. . ....|+| ..+++.+.||.+.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C---YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 3567888 66777663 4789999999999888876532 1 2334444 4555667788888888755554422
Q ss_pred ----ecCCCccE-EEEEee--CCEEEEEeCCCcEEEEECCCCCccE-EEec-------c---ccCCeEEEEEeCCCCEEE
Q 014934 246 ----MEGHRLRV-GALAWS--SSLLSSGSRDKSILQRDIRAQEDFV-SKLS-------G---HKSEVCGLKWSYDNRELA 307 (415)
Q Consensus 246 ----l~~h~~~V-~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~-------~---h~~~V~~l~~spdg~~la 307 (415)
+.....++ ..+.+. +..++..+..+.+.+.|+......+ ..+. . .......++++|+++.+.
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly 334 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY 334 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence 11111111 112233 4566666778899999986543111 0000 0 011222378999988777
Q ss_pred EEeC----------CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCC-cEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 308 SGGN----------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH-GLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 308 sg~~----------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
+... ++.|.++|+.+.+.+.++.. ......++|+|+++ .++++.. .++.|.++|+.+++.+..+
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~--~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSA--GTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEET--TTTEEEEEETTTCCEEEEE
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcC--CCCeEEEEECCCCCEEEEe
Confidence 6542 35799999999999988853 23578999999998 6666664 5899999999999999987
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.71 E-value=6.5e-05 Score=73.11 Aligned_cols=228 Identities=11% Similarity=-0.067 Sum_probs=148.4
Q ss_pred CCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCCcEEEEECCCC----eeeEEecCCCc
Q 014934 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRC----KRVRTMEGHRL 251 (415)
Q Consensus 177 ~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg~V~iwd~~~~----~~~~~l~~h~~ 251 (415)
+..+|..+....|+..++.......+. ..-..+..|+|++.+..|... ...+.|+.+++... .....+.....
T Consensus 82 ~~~~ll~~~~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 82 SIAYLFFTNRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp TSCEEEEEETTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred ccceeEEeccceeEEEccCCcceeEec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 445677777889999999887766655 345678999999866655555 45678988988652 22333333344
Q ss_pred cEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe--CCCcEEEEECCCCcee
Q 014934 252 RVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG--NDNRLFVWNQHSTQPV 326 (415)
Q Consensus 252 ~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~--~dg~I~iwd~~~~~~~ 326 (415)
....|+++ ++++++-...+.|.+.++.... ....+........+|+++|.+..|.... ..+.|...++......
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 56666665 3455555667889999987654 2233333345688999999766665554 2478999998654443
Q ss_pred EEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC---CCCEEEEEECCCCCeEEEEEecCCCcE
Q 014934 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSKNVNELVSTHGYSQNQI 403 (415)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~---~~~V~~l~~s~~~~~l~s~~g~~dg~I 403 (415)
..+...-.....|++++++..|+.+-. ....|..+|+........+.. -....++++ ++..|+.+ ....+.|
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywt-d~~~~~V 313 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWT-DIINEAI 313 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEE-ESSSCSE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEEC--CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEe-cCCCCeE
Confidence 333344467899999998887888765 678999999875443333332 234567777 33445443 4566788
Q ss_pred EEEECCCCc
Q 014934 404 IVWRYPTMS 412 (415)
Q Consensus 404 ~vw~~~s~~ 412 (415)
..++-.+++
T Consensus 314 ~~~~~~~G~ 322 (400)
T 3p5b_L 314 FSANRLTGS 322 (400)
T ss_dssp EEEESSSCC
T ss_pred EEEEcCCCC
Confidence 888865554
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-06 Score=86.87 Aligned_cols=230 Identities=13% Similarity=0.074 Sum_probs=144.6
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCC---CCeEEEEEcC--CCCeEEEEEC------CCcEEEEECCCCeeeEEe
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGID---DSVCSVGWAN--RNTHLAVGTS------HGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~---~~V~~v~~sp--~g~~la~g~~------dg~V~iwd~~~~~~~~~l 246 (415)
+.+++...++.|+.+|..+|+..-....... ..+.+ +| .+..+++++. +|.|..+|..+++.+-.+
T Consensus 116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~---~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQ---APFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCS---CCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceecc---CCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 4444545689999999999998776654320 01211 11 2345666665 789999999999887665
Q ss_pred cCCCcc-------------------------------------E-EEEEee--CCEEEEEeCC----------------C
Q 014934 247 EGHRLR-------------------------------------V-GALAWS--SSLLSSGSRD----------------K 270 (415)
Q Consensus 247 ~~h~~~-------------------------------------V-~~l~~~--~~~l~sgs~d----------------g 270 (415)
...... + ..++++ ...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 422110 0 123344 2566666532 2
Q ss_pred cEEEEECCCCCccEEEec--ccc--------CCeEEEEEeCCCC---EEEEEeCCCcEEEEECCCCceeEEeccCC----
Q 014934 271 SILQRDIRAQEDFVSKLS--GHK--------SEVCGLKWSYDNR---ELASGGNDNRLFVWNQHSTQPVLKYCEHT---- 333 (415)
Q Consensus 271 ~I~iwd~~~~~~~~~~~~--~h~--------~~V~~l~~spdg~---~lasg~~dg~I~iwd~~~~~~~~~~~~h~---- 333 (415)
.|..+|.++++. +-.++ .|. .++. +....+|+ .++.++.+|.++++|..+++.+..+....
T Consensus 273 ~v~Ald~~tG~~-~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 273 TIWGRDLDTGMA-KWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp EEEEEETTTCCE-EEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEecCCCcE-EEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 599999998874 33332 121 2221 22234674 57788999999999999999887764221
Q ss_pred ---------CcE--------------------------EEEEEcCCCCcEEEEEc---------------C---------
Q 014934 334 ---------AAV--------------------------KAIAWSPHLHGLLASGG---------------G--------- 354 (415)
Q Consensus 334 ---------~~V--------------------------~~l~~sp~~~~llasgg---------------g--------- 354 (415)
.++ ..++++|+...+++... |
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 111 13567777665554421 0
Q ss_pred ----------CCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 355 ----------TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 355 ----------~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
..++.|..||+.+|+.+..+..+..+........+..+++ +..|+.|+.||..+++.+
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~--g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY--ATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEE
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEE--EcCCCeEEEEECCCCCEE
Confidence 1358899999999999888876555444333334566666 678999999999988764
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=9.6e-05 Score=78.36 Aligned_cols=230 Identities=14% Similarity=0.114 Sum_probs=156.2
Q ss_pred cceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecC------CCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 168 FYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLG------IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 168 ~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~------~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
-.|.++...+...|-+|.++.|++|+..+++........ ....|.++...++|. |.+|+.++-|..|+..+..
T Consensus 263 ~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~ 341 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR 341 (795)
T ss_dssp SBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS
T ss_pred CeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc
Confidence 358888887744344444457999998887765443211 135799999998887 5668887889999876544
Q ss_pred eeEEecC-------CCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEecc--------ccCCeEEEEEeCCCCE
Q 014934 242 RVRTMEG-------HRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSG--------HKSEVCGLKWSYDNRE 305 (415)
Q Consensus 242 ~~~~l~~-------h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--------h~~~V~~l~~spdg~~ 305 (415)
.. .+.. ....|.++... ...|..|+.++-|..||..+.. ....... ....|.++...++|++
T Consensus 342 ~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~ 419 (795)
T 4a2l_A 342 FK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQR-FTSYTLQEDESARGIGSNNIKAVYVDEKKSL 419 (795)
T ss_dssp SE-EECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCC-EEEECCC------CCSCSCEEEEEEETTTTE
T ss_pred ce-EEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCc-EEEEecCCCCcccCCCCccEEEEEEcCCCCE
Confidence 22 2221 23568999887 4578889988889999987654 2222111 2357999999989985
Q ss_pred EEEEeCCCcEEEEECCCCceeEEec-----cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-----
Q 014934 306 LASGGNDNRLFVWNQHSTQPVLKYC-----EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD----- 375 (415)
Q Consensus 306 lasg~~dg~I~iwd~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~----- 375 (415)
|..|+.++-|.+||..+++.. .+. .+...|.++...+++. |.+.. . +.|.+||..+++......
T Consensus 420 lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~-lwigt---~-~Gl~~~~~~~~~~~~~~~~~~~~ 493 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGN-LWLGT---L-SALVRFNPEQRSFTTIEKEKDGT 493 (795)
T ss_dssp EEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSC-EEEEE---S-SCEEEEETTTTEEEECCBCTTCC
T ss_pred EEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCC-EEEEe---c-CceeEEeCCCCeEEEcccccccc
Confidence 677787777999999887643 332 1345799999888876 55533 3 458899988876433221
Q ss_pred --CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 376 --TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 376 --~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
....|.++...++|+..+.+ . +-|..|+..+
T Consensus 494 ~~~~~~i~~i~~d~~g~lWigt---~-~Gl~~~~~~~ 526 (795)
T 4a2l_A 494 PVVSKQITTLFRDSHKRLWIGG---E-EGLSVFKQEG 526 (795)
T ss_dssp BCCCCCEEEEEECTTCCEEEEE---S-SCEEEEEEET
T ss_pred ccCCceEEEEEECCCCCEEEEe---C-CceEEEeCCC
Confidence 13568999999999877763 2 4577777543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=4.4e-06 Score=86.95 Aligned_cols=207 Identities=13% Similarity=0.055 Sum_probs=135.8
Q ss_pred CCeEEEEECCCCCeEEeEecCC--CC----------------------------CeEEEEEcCCCCeEEEEECCCc----
Q 014934 186 GNCVYLWNACSSKVTKLCDLGI--DD----------------------------SVCSVGWANRNTHLAVGTSHGK---- 231 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~--~~----------------------------~V~~v~~sp~g~~la~g~~dg~---- 231 (415)
++.|+.+|..+|+..-.+.... .. ....+++.+++..+.+++.++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 4789999999999877665311 00 1124678888888888887763
Q ss_pred ---------------EEEEECCCCeeeEEecC--CC-------cc--EEEEEeeCC---EEEEEeCCCcEEEEECCCCCc
Q 014934 232 ---------------VQIWDASRCKRVRTMEG--HR-------LR--VGALAWSSS---LLSSGSRDKSILQRDIRAQED 282 (415)
Q Consensus 232 ---------------V~iwd~~~~~~~~~l~~--h~-------~~--V~~l~~~~~---~l~sgs~dg~I~iwd~~~~~~ 282 (415)
|..+|..+++.+-.+.. |. .+ +..+.+.+. .++.++.+|.++++|..+++.
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 99999999998766653 22 22 223444553 689999999999999998873
Q ss_pred cEEEecccc------------CC------------------------eEEEEEeCCCCEEEEEe----------------
Q 014934 283 FVSKLSGHK------------SE------------------------VCGLKWSYDNRELASGG---------------- 310 (415)
Q Consensus 283 ~~~~~~~h~------------~~------------------------V~~l~~spdg~~lasg~---------------- 310 (415)
+....... .+ -..++++|+..++....
T Consensus 337 -l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 337 -ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp -EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred -eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 32111000 00 01267888777665421
Q ss_pred --------------------CCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE
Q 014934 311 --------------------NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370 (415)
Q Consensus 311 --------------------~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~ 370 (415)
.+|.|..||+.+++.+.++..+. .+....+...+. +++.++ .|+.|+.||..+|+.
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg-~vf~g~--~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGN-LVFQGT--AAGQMHAYSADKGEA 491 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTT-EEEEEC--TTSEEEEEETTTCCE
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCC-EEEEEC--CcccchhhhhhcChh
Confidence 24789999999999988775433 223233334454 555554 899999999999999
Q ss_pred EEEeeCCCCEE--EEEECCCCC-eEEEEEe
Q 014934 371 LSCMDTGSQVC--NLVWSKNVN-ELVSTHG 397 (415)
Q Consensus 371 ~~~~~~~~~V~--~l~~s~~~~-~l~s~~g 397 (415)
+..+..+..+. -+.+..+|+ +++.++|
T Consensus 492 l~~~~~~~~~~~~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 492 LWQFEAQSGIVAAPMTFELAGRQYVAIMAG 521 (668)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred heEecCCCCcccCceEEEECCEEEEEEEec
Confidence 99887654332 244555666 5555554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.59 E-value=8.4e-05 Score=69.25 Aligned_cols=219 Identities=9% Similarity=0.035 Sum_probs=135.1
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC--cEEEEECCCCeee
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG--KVQIWDASRCKRV 243 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg--~V~iwd~~~~~~~ 243 (415)
.....++|++ ++++++. .++.|+.|+..+ +....... ...+.++++.++|+++++..... .|..+|..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~--~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV--EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC--SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC--CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4577899988 6666666 468999999865 44444443 35789999999999665544332 4667777777643
Q ss_pred EEecC-CCccEEEEE-eeCCEEEEEe-CCCcEEEEECCCCCccEEEec---------cccCCeEEEEEeCCCCEEEEE-e
Q 014934 244 RTMEG-HRLRVGALA-WSSSLLSSGS-RDKSILQRDIRAQEDFVSKLS---------GHKSEVCGLKWSYDNRELASG-G 310 (415)
Q Consensus 244 ~~l~~-h~~~V~~l~-~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~---------~h~~~V~~l~~spdg~~lasg-~ 310 (415)
..... .......++ |.+..++... .++.|+++|.......+.... ..-....+| +++++.|..+ .
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 32221 112223333 4444444444 588999999865421111111 111235566 7888766554 4
Q ss_pred CCCcEEEEECCC-Cce--eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE--EeeCC-CCEEEEE
Q 014934 311 NDNRLFVWNQHS-TQP--VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS--CMDTG-SQVCNLV 384 (415)
Q Consensus 311 ~dg~I~iwd~~~-~~~--~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~--~~~~~-~~V~~l~ 384 (415)
..+.|.+||+.. ++. ...+.. ......+++.++|. ++++.. ..+.|.++|.. |+... .+... ....+++
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~--~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a 261 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN-LYGATH--IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA 261 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC-EEEECB--TTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred CCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC-EEEEeC--CCCeEEEECCC-CCEEEEeecccccCCceEEE
Confidence 568899999864 321 112211 13456689999986 666654 57889999975 66532 34433 6789999
Q ss_pred EC---CCCCeEEEEE
Q 014934 385 WS---KNVNELVSTH 396 (415)
Q Consensus 385 ~s---~~~~~l~s~~ 396 (415)
|. ++++.|+++.
T Consensus 262 ~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 262 FGQTEGDCTAIYVVT 276 (306)
T ss_dssp ECCSTTTTTEEEEEE
T ss_pred EecccCCCCEEEEEC
Confidence 99 8988877754
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.56 E-value=6.5e-05 Score=70.70 Aligned_cols=227 Identities=11% Similarity=0.010 Sum_probs=142.4
Q ss_pred CcEEEEEcCCeEEEEECCCCC--eEEeEecCCCCCeEEEEEcCCCCeE-EEEECCCcEEEEECCCCeee-EEecCCCccE
Q 014934 178 HNVLAVGLGNCVYLWNACSSK--VTKLCDLGIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDASRCKRV-RTMEGHRLRV 253 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~--~~~~~~~~~~~~V~~v~~sp~g~~l-a~g~~dg~V~iwd~~~~~~~-~~l~~h~~~V 253 (415)
.-+|.++....|+.+++.... ..... ..-..+.+++|.+.+..| ++-...+.|..+++...... ..+.......
T Consensus 4 ~p~ll~~~~~~I~~i~l~~~~~~~~~~~--~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 4 APLLLYANRRDLRLVDATNGKENATIVV--GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp CCEEEEECEEEEEEEETTCTTSCCEEEE--EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred ccEEEEEccCeEEEEECCCCceEEEEEe--cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 346777777899999998764 22222 222457799999865544 44455678999998765321 1222112234
Q ss_pred EEEEee--C-CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe--CCCcEEEEECCCCceeEE
Q 014934 254 GALAWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG--NDNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 254 ~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~--~dg~I~iwd~~~~~~~~~ 328 (415)
..+++. . .++++-...+.|.++++..... ............+++++|.+..|.... ..+.|...++........
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~ 160 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII 160 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE
Confidence 445554 3 4555556678899999876542 223334445678999999766666555 357899998864333222
Q ss_pred eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 329 YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 329 ~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
....-.....|+|+|++..|+.+-. ..+.|..+|+........+. ......++++.. ..++.+ ....+.|..++
T Consensus 161 ~~~~l~~Pnglavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywt-d~~~~~V~~~~ 235 (318)
T 3sov_A 161 INSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWT-DWSTHSILACN 235 (318)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEE-ETTTTEEEEEE
T ss_pred EECCCCCccEEEEeccCCEEEEEEC--CCCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEE-ecCCCeEEEEE
Confidence 2333456789999998887888876 68899999987543322222 334567777753 344443 45677888888
Q ss_pred CCCCc
Q 014934 408 YPTMS 412 (415)
Q Consensus 408 ~~s~~ 412 (415)
..+++
T Consensus 236 ~~~G~ 240 (318)
T 3sov_A 236 KYTGE 240 (318)
T ss_dssp TTTCC
T ss_pred CCCCC
Confidence 76654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=0.00016 Score=76.54 Aligned_cols=225 Identities=12% Similarity=0.058 Sum_probs=152.9
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecC-------CCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLG-------IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~-------~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~ 240 (415)
.|.++...+ +++.++..++.|..|+..+++........ ....|.++...++|..|.+|+.++-|.+||..++
T Consensus 358 ~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 358 VVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG 437 (795)
T ss_dssp SEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred eeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence 477888777 55555556678999999887765543211 1357999999888886778888778999999877
Q ss_pred eeeEEec----CCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEecc-------ccCCeEEEEEeCCCCEEEE
Q 014934 241 KRVRTME----GHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSG-------HKSEVCGLKWSYDNRELAS 308 (415)
Q Consensus 241 ~~~~~l~----~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-------h~~~V~~l~~spdg~~las 308 (415)
+...... .....|.++... ...|..|+. +-|.+||..+.. ...+.. ....|.++...++|++.+.
T Consensus 438 ~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 514 (795)
T 4a2l_A 438 QVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRS--FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG 514 (795)
T ss_dssp CEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTE--EEECCBCTTCCBCCCCCEEEEEECTTCCEEEE
T ss_pred cEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCe--EEEccccccccccCCceEEEEEECCCCCEEEE
Confidence 6443222 134578888887 356666666 458899987654 222221 2356899999988887665
Q ss_pred EeCCCcEEEEECCCCceeEEec-------cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-----C
Q 014934 309 GGNDNRLFVWNQHSTQPVLKYC-------EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-----T 376 (415)
Q Consensus 309 g~~dg~I~iwd~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-----~ 376 (415)
.. +-|..||..+++. .+. .....|.++...++|. +.++. .. -|..||..+++.. .+. .
T Consensus 515 t~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT---~~-Gl~~~d~~~~~~~-~~~~~~gl~ 584 (795)
T 4a2l_A 515 GE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGI-IWVGT---RE-GFYCFNEKDKQIK-RYNTTNGLP 584 (795)
T ss_dssp ES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSC-EEEEE---SS-CEEEEETTTTEEE-EECGGGTCS
T ss_pred eC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCC-EEEEe---CC-CceeECCCCCcEE-EeCCCCCCc
Confidence 54 4588999877654 332 1345789999998887 55543 23 6888998877543 332 2
Q ss_pred CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 377 ~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
...|.++...++|+..+++ ++-|..|+..+
T Consensus 585 ~~~i~~i~~d~~g~lWi~t----~~Gl~~~~~~~ 614 (795)
T 4a2l_A 585 NNVVYGILEDSFGRLWLST----NRGISCFNPET 614 (795)
T ss_dssp CSCEEEEEECTTSCEEEEE----TTEEEEEETTT
T ss_pred hhheEEEEECCCCCEEEEc----CCceEEEcCCC
Confidence 3568999999999877763 34566777554
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-05 Score=74.12 Aligned_cols=181 Identities=10% Similarity=0.007 Sum_probs=120.8
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecC--------------------CCccEEEEEeeC--CEEEEE
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG--------------------HRLRVGALAWSS--SLLSSG 266 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~--------------------h~~~V~~l~~~~--~~l~sg 266 (415)
....+++|.++|+++.++..++.|..||..+++.. .+.. ....+..+++.+ ..|+.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 34677889999998888889999999998765432 2210 013578888873 677777
Q ss_pred eCCCcEEEEECCCCCccEEEec----c-ccCCeEEEEEeC-CCCEEEEEeC-----------------CCcEEEEECCCC
Q 014934 267 SRDKSILQRDIRAQEDFVSKLS----G-HKSEVCGLKWSY-DNRELASGGN-----------------DNRLFVWNQHST 323 (415)
Q Consensus 267 s~dg~I~iwd~~~~~~~~~~~~----~-h~~~V~~l~~sp-dg~~lasg~~-----------------dg~I~iwd~~~~ 323 (415)
...+.|..+|...+. +..+. + .......+++.+ +|++.++-.. ++.|..||..++
T Consensus 98 d~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp ETTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred ECCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 666668888876543 12221 1 113478899999 9987776432 367999998776
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC---cEEEEeeCCCCEEEEEECCCCCeEEEEE
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN---THLSCMDTGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~---~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 396 (415)
+..... ..-.....|+|+|++..++++-. ..+.|..|++... .......... ...++++++|+.+++..
T Consensus 176 ~~~~~~-~~~~~p~gia~~~dg~~lyv~d~--~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 176 ETTLLL-KELHVPGGAEVSADSSFVLVAEF--LSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp EEEEEE-EEESCCCEEEECTTSSEEEEEEG--GGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred EEEEec-cCCccCcceEECCCCCEEEEEeC--CCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec
Confidence 543222 22234567999999987777755 5789999998752 2111112223 78899999998777753
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00013 Score=66.23 Aligned_cols=195 Identities=13% Similarity=0.175 Sum_probs=130.8
Q ss_pred CCCCCeEEEEEcCCCC-eEEEEECCCcEEEEECCCCeeeEEec-CCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCC
Q 014934 206 GIDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE 281 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~-~la~g~~dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~ 281 (415)
+-.+.+..++|.|++. ++++...++.|...|.. ++.++.+. +.....-.|++.+ .++++.-.++.+.++++....
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 3446799999999766 55557788899999998 88777764 2235577788763 344555567789999887654
Q ss_pred c--cEEEec------cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC---CCceeEEec-------cCCCcEEEEEEcC
Q 014934 282 D--FVSKLS------GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH---STQPVLKYC-------EHTAAVKAIAWSP 343 (415)
Q Consensus 282 ~--~~~~~~------~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~---~~~~~~~~~-------~h~~~V~~l~~sp 343 (415)
. .+.... .......+|+|+|.++.|.++.......||.+. ....+..+. .+...+.+++++|
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ 182 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence 2 112221 234457899999998777776655444444442 111222221 1344678999999
Q ss_pred CCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC----------CCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 344 HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG----------SQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 344 ~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~----------~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
....+++.+. ..+.|.++|.. |+.+..+.-. .+.-+++|.++|+..++ ++.|.++++.
T Consensus 183 ~tg~lliLS~--~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv---sE~n~~y~f~ 250 (255)
T 3qqz_A 183 QKNTLLVLSH--ESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV---SEPNRFYRFT 250 (255)
T ss_dssp TTTEEEEEET--TTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE---ETTTEEEEEE
T ss_pred CCCeEEEEEC--CCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE---cCCceEEEEE
Confidence 9888888887 78999999966 6666655421 37899999999986665 3566666654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.4e-05 Score=80.11 Aligned_cols=229 Identities=13% Similarity=0.063 Sum_probs=140.7
Q ss_pred EEEEEcCCeEEEEECCCCCeEEeEecCCC---CCeEE-EEEcCCCCeEEEEE------CCCcEEEEECCCCeeeEEecCC
Q 014934 180 VLAVGLGNCVYLWNACSSKVTKLCDLGID---DSVCS-VGWANRNTHLAVGT------SHGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 180 ~la~~~d~~V~iwd~~~~~~~~~~~~~~~---~~V~~-v~~sp~g~~la~g~------~dg~V~iwd~~~~~~~~~l~~h 249 (415)
+++.+.++.|+-+|..+|+..-....... ..+++ -.+ .++ .+++++ .+|.|.-+|..+++.+-.+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 55555789999999999998766554220 01221 011 134 556665 3799999999999887655422
Q ss_pred Ccc-------------------------------------E-EEEEee--CCEEEEEeCC----------------CcEE
Q 014934 250 RLR-------------------------------------V-GALAWS--SSLLSSGSRD----------------KSIL 273 (415)
Q Consensus 250 ~~~-------------------------------------V-~~l~~~--~~~l~sgs~d----------------g~I~ 273 (415)
... + ..+++. .++++.+..+ +.|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 111 0 012232 4567777655 3799
Q ss_pred EEECCCCCccEEEec-c-cc--------CCeEEEEEe-CCC---CEEEEEeCCCcEEEEECCCCceeEEeccCC------
Q 014934 274 QRDIRAQEDFVSKLS-G-HK--------SEVCGLKWS-YDN---RELASGGNDNRLFVWNQHSTQPVLKYCEHT------ 333 (415)
Q Consensus 274 iwd~~~~~~~~~~~~-~-h~--------~~V~~l~~s-pdg---~~lasg~~dg~I~iwd~~~~~~~~~~~~h~------ 333 (415)
.+|.++++. +-.++ . |. .++. +... .+| ..++.++.+|.++++|.++++.+.......
T Consensus 282 Ald~~TG~~-~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~ 359 (599)
T 1w6s_A 282 GRDADTGEA-KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFK 359 (599)
T ss_dssp EEETTTCCE-EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEeCCCCce-eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccc
Confidence 999999874 33332 2 21 1221 2222 567 467788999999999999999887664211
Q ss_pred -------CcE--------------------------EEEEEcCCCCcEEEEEc---------------------------
Q 014934 334 -------AAV--------------------------KAIAWSPHLHGLLASGG--------------------------- 353 (415)
Q Consensus 334 -------~~V--------------------------~~l~~sp~~~~llasgg--------------------------- 353 (415)
..+ ..++++|+...+++...
T Consensus 360 ~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 439 (599)
T 1w6s_A 360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMY 439 (599)
T ss_dssp EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred ccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceec
Confidence 111 13456666553333210
Q ss_pred ---CC------CCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 354 ---GT------ADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 354 ---g~------~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
.. .++.|.-||+.+|+.+.....+.++..-.....+..++. |..|+.|+.||..+++.+
T Consensus 440 ~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~--gt~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 440 PGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFY--GTLDGYLKARDSDTGDLL 507 (599)
T ss_dssp ECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEE
T ss_pred cCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEE--ECCCCeEEEEECCCCCEE
Confidence 01 247899999999999888765443332222234566666 678999999999998764
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-06 Score=84.22 Aligned_cols=203 Identities=11% Similarity=0.002 Sum_probs=130.2
Q ss_pred EeecCC-CcEEEEEc---CCeEEE--EECCCCCeEEeEecCCCCCeEEEEEcCCCC-eEEEEECCCcEEEEECCC-----
Q 014934 172 LVDWSS-HNVLAVGL---GNCVYL--WNACSSKVTKLCDLGIDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASR----- 239 (415)
Q Consensus 172 ~l~ws~-~~~la~~~---d~~V~i--wd~~~~~~~~~~~~~~~~~V~~v~~sp~g~-~la~g~~dg~V~iwd~~~----- 239 (415)
.+.++| ++.|.++. ++.|.+ +|..+ ...+..+. . +.+.|+|+ .+++.+.||.+.+.|+.+
T Consensus 128 ~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 128 IIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp SEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS--C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred eEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC--c---eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 567888 66666663 357888 88877 33443321 1 22345553 344456788888888876
Q ss_pred CeeeEE----ecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCc-cEEEecc-------c---cCCeEEEEEeCCCC
Q 014934 240 CKRVRT----MEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQED-FVSKLSG-------H---KSEVCGLKWSYDNR 304 (415)
Q Consensus 240 ~~~~~~----l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~-------h---~~~V~~l~~spdg~ 304 (415)
++.+.. +.-...+. . ...+..++..+. +.+.+.|+..... .+..+.- + ......++++||++
T Consensus 200 ~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~ 276 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276 (368)
T ss_dssp EECCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred CeEEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC
Confidence 433211 11112233 2 222455555556 8999999875431 1111110 0 11122268999999
Q ss_pred EEEEEeC---------CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 305 ELASGGN---------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 305 ~lasg~~---------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
.+.++.. ++.+.++|+.+.+.+.++.... ...+++|+|+++.++++..+ .++.|.++|+.+++.+..+.
T Consensus 277 ~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~-~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSA-GTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEET-TTTEEEEEESSSCEEEEECC
T ss_pred EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccC-CCCeEEEEECCCCcEEEEEE
Confidence 8876543 2356699999999888775433 68899999999877777641 28999999999999999999
Q ss_pred CCCCEEEEEECC
Q 014934 376 TGSQVCNLVWSK 387 (415)
Q Consensus 376 ~~~~V~~l~~s~ 387 (415)
.+.....+++.+
T Consensus 355 vg~~P~~i~~~~ 366 (368)
T 1mda_H 355 LDKGPESLSVQN 366 (368)
T ss_dssp CCSCCCEEECCC
T ss_pred CCCCCCEEEeec
Confidence 887777777654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.8e-05 Score=83.60 Aligned_cols=235 Identities=13% Similarity=0.068 Sum_probs=132.4
Q ss_pred ceeEeecC-C-CcEEEEEcC--C----eEEEEECCCC-CeEEeEecCCCCCeEEEEEcCCCCeEEEEECC-----CcEEE
Q 014934 169 YLNLVDWS-S-HNVLAVGLG--N----CVYLWNACSS-KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-----GKVQI 234 (415)
Q Consensus 169 ~i~~l~ws-~-~~~la~~~d--~----~V~iwd~~~~-~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d-----g~V~i 234 (415)
.+....|| | ++.||.+.+ | .|+++|+.++ +..... + .....++.|+|||+.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~--~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-V--SGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-E--EEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-c--cCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 8 778887743 2 4999999998 632110 0 1123468899999988887765 25788
Q ss_pred EECCCCe--eeEEec-CCCccEEEEEee--CCEEEEEeC---CCcEEEEECCCCCccE--EEe-ccccCCeEEEEEeCCC
Q 014934 235 WDASRCK--RVRTME-GHRLRVGALAWS--SSLLSSGSR---DKSILQRDIRAQEDFV--SKL-SGHKSEVCGLKWSYDN 303 (415)
Q Consensus 235 wd~~~~~--~~~~l~-~h~~~V~~l~~~--~~~l~sgs~---dg~I~iwd~~~~~~~~--~~~-~~h~~~V~~l~~spdg 303 (415)
+++.++. ....+. ........+.|+ +++|+..+. ...|+++|+.++.... ..+ ........++.|+. |
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 8887653 223332 223446678888 455655442 3468888998753112 333 33344556666554 5
Q ss_pred CEEEE-EeCC----CcEEEEECCCCceeEE-eccCCCc--EEEEEEcCCCCcEEEEEcCCCCCe--EEEEEC-------C
Q 014934 304 RELAS-GGND----NRLFVWNQHSTQPVLK-YCEHTAA--VKAIAWSPHLHGLLASGGGTADRC--IRFWNT-------T 366 (415)
Q Consensus 304 ~~las-g~~d----g~I~iwd~~~~~~~~~-~~~h~~~--V~~l~~sp~~~~llasggg~~d~~--I~iwd~-------~ 366 (415)
+.|+. ...+ ..|.++|+.++..... +..|... +..+.+ .+..++++.. .++. |.++++ .
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~--~~g~~~l~~~dl~~~~~~~~ 406 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR--RAGLTRIWTMMADSQDGVFK 406 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE--ETTEEEEEEEECCTTTSCCC
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE--eCCEEEEEEEeccccccccc
Confidence 55544 4333 3688888865322122 2234443 444555 4556777765 5664 566675 3
Q ss_pred CCcEEEEeeCC--CCEEEEEE----CCCCCeEEEEEecCC--CcEEEEECCCC
Q 014934 367 TNTHLSCMDTG--SQVCNLVW----SKNVNELVSTHGYSQ--NQIIVWRYPTM 411 (415)
Q Consensus 367 t~~~~~~~~~~--~~V~~l~~----s~~~~~l~s~~g~~d--g~I~vw~~~s~ 411 (415)
+++.+..+... ..+..+.+ +.++..++.+..+.. ..+..+++.+.
T Consensus 407 ~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 407 AGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp TTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred CCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 44413444322 23444443 456666655433222 35666666554
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.8e-05 Score=80.84 Aligned_cols=207 Identities=10% Similarity=-0.004 Sum_probs=131.3
Q ss_pred CCeEEEEECCCCCeEEeEecCCCC-------------------------------------CeEEEEEcCCCCeEEEEEC
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDD-------------------------------------SVCSVGWANRNTHLAVGTS 228 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~-------------------------------------~V~~v~~sp~g~~la~g~~ 228 (415)
++.|+.+|..+|+..-.+...... ....+++.++...+.+++.
T Consensus 175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g 254 (571)
T 2ad6_A 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG 254 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECC
Confidence 579999999999987666532110 0013456666667776664
Q ss_pred C----------------CcEEEEECCCCeeeEEecC--C--------CccEE-EEEeeC---CEEEEEeCCCcEEEEECC
Q 014934 229 H----------------GKVQIWDASRCKRVRTMEG--H--------RLRVG-ALAWSS---SLLSSGSRDKSILQRDIR 278 (415)
Q Consensus 229 d----------------g~V~iwd~~~~~~~~~l~~--h--------~~~V~-~l~~~~---~~l~sgs~dg~I~iwd~~ 278 (415)
+ +.|..+|..+++.+-.++. | ..++. ....++ ..++.++.+|.++++|..
T Consensus 255 ~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 334 (571)
T 2ad6_A 255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE 334 (571)
T ss_dssp CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred CCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECC
Confidence 2 3599999999988766642 2 12222 222234 357788999999999998
Q ss_pred CCCccEEEec-cc------------cCCe--------------------------EEEEEeCCCCEEEEEe---------
Q 014934 279 AQEDFVSKLS-GH------------KSEV--------------------------CGLKWSYDNRELASGG--------- 310 (415)
Q Consensus 279 ~~~~~~~~~~-~h------------~~~V--------------------------~~l~~spdg~~lasg~--------- 310 (415)
+++. +.... .. ..++ ..++++|+..+|.+..
T Consensus 335 tG~~-~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~ 413 (571)
T 2ad6_A 335 NGNL-IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEP 413 (571)
T ss_dssp TCCE-EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred CCCE-EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccc
Confidence 8873 32221 11 0111 2467888877777653
Q ss_pred ----------------------------CCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEE
Q 014934 311 ----------------------------NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (415)
Q Consensus 311 ----------------------------~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~i 362 (415)
.++.|..||+.+++.+.++... ..+....+...+. ++..++ .|+.|+.
T Consensus 414 ~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg-~v~~g~--~dg~l~a 489 (571)
T 2ad6_A 414 FMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGG-LVWYAT--LDGYLKA 489 (571)
T ss_dssp CCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTT-EEEEEC--TTSEEEE
T ss_pred cccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCC-EEEEEc--CCCeEEE
Confidence 3578999999999988887532 2222222222344 444454 7999999
Q ss_pred EECCCCcEEEEeeCCCCEE--EEEECCCCCeEEEEEe
Q 014934 363 WNTTTNTHLSCMDTGSQVC--NLVWSKNVNELVSTHG 397 (415)
Q Consensus 363 wd~~t~~~~~~~~~~~~V~--~l~~s~~~~~l~s~~g 397 (415)
||..+|+.+..+..+..+. -+.+..+|+.++.+..
T Consensus 490 ~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~ 526 (571)
T 2ad6_A 490 LDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEEC
Confidence 9999999999988654432 2445678876666543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00055 Score=72.27 Aligned_cols=232 Identities=9% Similarity=-0.078 Sum_probs=146.1
Q ss_pred EeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEE-EEECCCcEEEEECCCC----eeeEEe
Q 014934 172 LVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA-VGTSHGKVQIWDASRC----KRVRTM 246 (415)
Q Consensus 172 ~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la-~g~~dg~V~iwd~~~~----~~~~~l 246 (415)
+.+.....+|..+....|+..++...+...+.. ....+..|+|.+.+..|. +-...+.|+.+++... .....+
T Consensus 389 C~~~~~~p~Ll~an~~~Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi 466 (791)
T 3m0c_C 389 CKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 466 (791)
T ss_dssp CEETTSCCEEEEECBSSEEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE
T ss_pred eeecccccccccccccceeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE
Confidence 334444456777777788888888776655553 346788999998655444 4445678888888642 223333
Q ss_pred cCCCccEEEEEee--C-CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC--CCcEEEEECC
Q 014934 247 EGHRLRVGALAWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN--DNRLFVWNQH 321 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~--dg~I~iwd~~ 321 (415)
.........|+++ + +++++-...+.|.+.++.... ....+........+|+++|.+.+|..... .+.|.+.++.
T Consensus 467 ~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d 545 (791)
T 3m0c_C 467 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 545 (791)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence 3233344455554 4 455666677899999997654 22233334456889999997666655542 3789999986
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC---CCEEEEEECCCCCeEEEEEec
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG---SQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~---~~V~~l~~s~~~~~l~s~~g~ 398 (415)
.......+...-....+|++.+.+..|+++-. ....|...++........+... ....+|++. +..|+.+ -.
T Consensus 546 G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~--~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwt-D~ 620 (791)
T 3m0c_C 546 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT-DI 620 (791)
T ss_dssp SCCEEEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE-ET
T ss_pred CCceEEEEeCCCCCceEEEEecCCCeEEEEeC--CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEE-EC
Confidence 55443344344467899999988887888765 6788999998755444444321 235566663 3455554 45
Q ss_pred CCCcEEEEECCCC
Q 014934 399 SQNQIIVWRYPTM 411 (415)
Q Consensus 399 ~dg~I~vw~~~s~ 411 (415)
..+.|...+..++
T Consensus 621 ~~~~I~~~dk~tG 633 (791)
T 3m0c_C 621 INEAIFSANRLTG 633 (791)
T ss_dssp TTTEEEEEETTTC
T ss_pred CCCEEEEEeCCCC
Confidence 5677777775544
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=8.3e-05 Score=75.98 Aligned_cols=234 Identities=11% Similarity=0.065 Sum_probs=142.4
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCC---CeE-EEEEcC---CCC-eEEEEEC------CCcEEEEECCCCeee
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDD---SVC-SVGWAN---RNT-HLAVGTS------HGKVQIWDASRCKRV 243 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~---~V~-~v~~sp---~g~-~la~g~~------dg~V~iwd~~~~~~~ 243 (415)
+.+++...++.|+-+|..+|+..-........ .+. +-.... +|+ .+++++. +|.|.-+|..+++.+
T Consensus 118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~ 197 (582)
T 1flg_A 118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEI 197 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEE
Confidence 45555567899999999999987666543210 111 111111 233 5666653 789999999999876
Q ss_pred EEecCCCccE-----------------------------------------EEEEee--CCEEEEEeC------------
Q 014934 244 RTMEGHRLRV-----------------------------------------GALAWS--SSLLSSGSR------------ 268 (415)
Q Consensus 244 ~~l~~h~~~V-----------------------------------------~~l~~~--~~~l~sgs~------------ 268 (415)
-........+ ..++++ .++++.+..
T Consensus 198 W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~ 277 (582)
T 1flg_A 198 WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTA 277 (582)
T ss_dssp EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSC
T ss_pred eecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccccc
Confidence 5443211000 012233 256666653
Q ss_pred --------C----CcEEEEECCCCCccEEEec-ccc--------CCeEEEEEe-CCCC---EEEEEeCCCcEEEEECCCC
Q 014934 269 --------D----KSILQRDIRAQEDFVSKLS-GHK--------SEVCGLKWS-YDNR---ELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 269 --------d----g~I~iwd~~~~~~~~~~~~-~h~--------~~V~~l~~s-pdg~---~lasg~~dg~I~iwd~~~~ 323 (415)
| +.|..+|..+++..-+... .|. .++. +... .+|+ .++.++.+|.|+++|..++
T Consensus 278 ~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 278 KGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp TTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred CCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 2 5799999999884332222 232 1221 2222 4674 7888999999999999999
Q ss_pred ceeEEeccCC-------------CcE--------------------------------EEEEEcCCCCcEEEEEc-----
Q 014934 324 QPVLKYCEHT-------------AAV--------------------------------KAIAWSPHLHGLLASGG----- 353 (415)
Q Consensus 324 ~~~~~~~~h~-------------~~V--------------------------------~~l~~sp~~~~llasgg----- 353 (415)
+.+..+.... .++ ..++++|+...+++...
T Consensus 357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 436 (582)
T 1flg_A 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence 9887764331 000 12456666554444321
Q ss_pred -------------------------CCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 354 -------------------------GTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 354 -------------------------g~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
...++.|.-||+.+|+.+........+..-.....+..++. |..|+.|+.||.
T Consensus 437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--g~~dg~l~A~D~ 514 (582)
T 1flg_A 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFT--GTGDGYFKAFDA 514 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEE--ECTTSEEEEEET
T ss_pred eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEE--ECCCCcEEEEEC
Confidence 01368899999999999888765544332222224566666 778999999999
Q ss_pred CCCccc
Q 014934 409 PTMSKV 414 (415)
Q Consensus 409 ~s~~~l 414 (415)
.+++.+
T Consensus 515 ~tG~~l 520 (582)
T 1flg_A 515 KSGKEL 520 (582)
T ss_dssp TTCCEE
T ss_pred CCCCEE
Confidence 998865
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00099 Score=68.59 Aligned_cols=228 Identities=7% Similarity=-0.098 Sum_probs=148.6
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCCcEEEEECCCCeeeEEecCCCccEEEE
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRCKRVRTMEGHRLRVGAL 256 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l 256 (415)
..+|..+....|+..++.+........+..-..+..|+|++.+..|..+ ..++.|..+++........+.........|
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 4567778889999999987765544443334578999999976655544 457889999987543333333222334455
Q ss_pred Eee--C-CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe--CCCcEEEEECCCCceeEEecc
Q 014934 257 AWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG--NDNRLFVWNQHSTQPVLKYCE 331 (415)
Q Consensus 257 ~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~--~dg~I~iwd~~~~~~~~~~~~ 331 (415)
+++ + ++.++-...+.|.+.++..... .......-....+|+++|....|.... ..+.|...++........+ .
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~ 163 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-P 163 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-C
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-C
Confidence 554 4 4555556678899999876542 222323445678999999655555544 3578888888655433333 3
Q ss_pred CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 332 h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
.-.....|++.+++..|+.+-. ..+.|..+|+................++++.. + .|..+ -...+.|...|-.++
T Consensus 164 ~~~~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~-~ly~t-D~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 164 NVGRANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-D-YIYWT-DWSRRSIERANKTSG 238 (628)
T ss_dssp SCSSEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECCSCEEEEEEET-T-EEEEE-ETTTTEEEEEETTTC
T ss_pred CCCCcceEEEccccCEEEEEEC--CCCEEEEEcCCCCceEEeeccCCCceEEEEEC-C-EEEEe-cCCCCEEEEEECCCC
Confidence 4567899999998887888876 67899999997654422223344567788765 3 44443 455778888886554
Q ss_pred c
Q 014934 412 S 412 (415)
Q Consensus 412 ~ 412 (415)
+
T Consensus 239 ~ 239 (628)
T 4a0p_A 239 Q 239 (628)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00022 Score=66.31 Aligned_cols=193 Identities=9% Similarity=0.030 Sum_probs=120.5
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCC-C-cEEEEECCCCCcc
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRD-K-SILQRDIRAQEDF 283 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d-g-~I~iwd~~~~~~~ 283 (415)
.....+++|+++|+++++-..++.|..||.... ....+. ....+..+++. ++++++.... + .|..+|..++. .
T Consensus 31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~-~ 107 (306)
T 2p4o_A 31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT-V 107 (306)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC-E
T ss_pred CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe-E
Confidence 357889999999997766667889999998753 333333 23568889987 4554444332 2 47777776655 2
Q ss_pred EEEec-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-eEEec---------cCCCcEEEEEEcCCCCcEEEEE
Q 014934 284 VSKLS-GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP-VLKYC---------EHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 284 ~~~~~-~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~-~~~~~---------~h~~~V~~l~~sp~~~~llasg 352 (415)
..... .......+++..+++..+++-..++.|+++|..+++. +.... ..-.....| +|++..++++.
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 21111 1223345666666555555555688999999876532 21111 111234556 78888788887
Q ss_pred cCCCCCeEEEEECCC-CcE--EEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 353 GGTADRCIRFWNTTT-NTH--LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 353 gg~~d~~I~iwd~~t-~~~--~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
. ..+.|..|++.. ++. ...+........++++++|+.+++ ....+.|.+++..
T Consensus 186 ~--~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va--~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 186 T--EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA--THIYNSVVRIAPD 241 (306)
T ss_dssp T--TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE--CBTTCCEEEECTT
T ss_pred C--CCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEE--eCCCCeEEEECCC
Confidence 6 688999999874 331 112222234567899999987666 4456789998854
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00011 Score=75.36 Aligned_cols=193 Identities=9% Similarity=0.033 Sum_probs=121.9
Q ss_pred EEEEEc-CCeEEEEEC-CCCCeEEeEecCCCC----------CeEEEEEcCCCCe----EEEEECCCcEEEEECCCCeee
Q 014934 180 VLAVGL-GNCVYLWNA-CSSKVTKLCDLGIDD----------SVCSVGWANRNTH----LAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 180 ~la~~~-d~~V~iwd~-~~~~~~~~~~~~~~~----------~V~~v~~sp~g~~----la~g~~dg~V~iwd~~~~~~~ 243 (415)
+.+++. ++.|+-+|. .+|+..-.+...... ....++++|.+.. |++++.|+.|.-+|..+++.+
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~ 144 (599)
T 1w6s_A 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV 144 (599)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEE
Confidence 344444 688999999 899987666543211 0123455444444 888899999999999999877
Q ss_pred EEecCCCc----cEE-EEEeeCCEEEEEe------CCCcEEEEECCCCCccEEEeccccC--------------------
Q 014934 244 RTMEGHRL----RVG-ALAWSSSLLSSGS------RDKSILQRDIRAQEDFVSKLSGHKS-------------------- 292 (415)
Q Consensus 244 ~~l~~h~~----~V~-~l~~~~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~h~~-------------------- 292 (415)
-....... .+. .-...+..+++++ .+|.|+.+|.++++..-........
T Consensus 145 W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~ 224 (599)
T 1w6s_A 145 WKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKG 224 (599)
T ss_dssp EEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTT
T ss_pred EeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccc
Confidence 55432210 111 1112345666665 3899999999998743222111100
Q ss_pred ----------------Ce-EEEEEeCCCCEEEEEeCC----------------CcEEEEECCCCceeEEeccCCC-----
Q 014934 293 ----------------EV-CGLKWSYDNRELASGGND----------------NRLFVWNQHSTQPVLKYCEHTA----- 334 (415)
Q Consensus 293 ----------------~V-~~l~~spdg~~lasg~~d----------------g~I~iwd~~~~~~~~~~~~h~~----- 334 (415)
.+ ..+++.++..++..+..+ +.|.-+|.++++.+..++....
T Consensus 225 ~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~ 304 (599)
T 1w6s_A 225 LGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDY 304 (599)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred cccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccc
Confidence 00 135667777888877665 3799999999999888764221
Q ss_pred -----cEEEEEEc-CCCC--cEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 335 -----AVKAIAWS-PHLH--GLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 335 -----~V~~l~~s-p~~~--~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
.+. +... .+|+ .+++.++ .+|.+.++|..+|+.+....
T Consensus 305 d~~~~p~l-~d~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 305 AGVNVMML-SEQKDKDGKARKLLTHPD--RNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp CCCCCCEE-EEEECTTSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEE
T ss_pred cCCCccEE-EeccccCCcEEEEEEEEC--CCcEEEEEECCCCCEeeccc
Confidence 121 2222 4553 3566555 89999999999999987665
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00057 Score=72.21 Aligned_cols=229 Identities=12% Similarity=0.065 Sum_probs=150.4
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEec--------CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDL--------GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~--------~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~ 239 (415)
.|.++.... +++-++..++.|..++..++........ -....|.++...++|. |.+|+.++-|..||..+
T Consensus 314 ~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 392 (781)
T 3v9f_A 314 SARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGK 392 (781)
T ss_dssp CEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTE
T ss_pred eEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCC
Confidence 477777777 5555555588899999887665443210 1235699999888776 55678767799999876
Q ss_pred CeeeEEe---cCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEec---cccCCeEEEEEeCCCCEEEEEeCC
Q 014934 240 CKRVRTM---EGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLS---GHKSEVCGLKWSYDNRELASGGND 312 (415)
Q Consensus 240 ~~~~~~l---~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~spdg~~lasg~~d 312 (415)
+...... ......|.++... ...|..|+.++-|..+|..++. ...+. .....|.++...++|.+.+ |+.
T Consensus 393 ~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~- 468 (781)
T 3v9f_A 393 RVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK--FQIIELEKNELLDVRVFYEDKNKKIWI-GTH- 468 (781)
T ss_dssp EEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE--EEECCSTTTCCCCEEEEEECTTSEEEE-EET-
T ss_pred CeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc--EEEeccCCCCCCeEEEEEECCCCCEEE-EEC-
Confidence 4332111 1234678898887 5677778887789999987654 23332 1346799998888776544 455
Q ss_pred CcEEEEECCCCceeEEeccC-----CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-----CCCCEEE
Q 014934 313 NRLFVWNQHSTQPVLKYCEH-----TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-----TGSQVCN 382 (415)
Q Consensus 313 g~I~iwd~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-----~~~~V~~ 382 (415)
+-|.+||..+++........ ...|.++...++|. +.+.. .++-|..||..+++.. .+. ....|.+
T Consensus 469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt---~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~ 543 (781)
T 3v9f_A 469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGT---FGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQ 543 (781)
T ss_dssp TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEE---SSSCEEEECTTCCEEE-EECTTTTCSCSCEEE
T ss_pred CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-EEEEE---cCCCEEEEeCCCCeEE-EccCCCCCCCCeeEE
Confidence 45899998876554332222 36789999998887 55433 3345788998776543 332 2356899
Q ss_pred EEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 383 LVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 383 l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+...++|...+++ .+|.|..|+..+
T Consensus 544 i~~d~~g~lWi~T---~~Glv~~~d~~~ 568 (781)
T 3v9f_A 544 IYRSSKGQMWLAT---GEGLVCFPSARN 568 (781)
T ss_dssp EEECTTSCEEEEE---TTEEEEESCTTT
T ss_pred EEECCCCCEEEEE---CCCceEEECCCC
Confidence 9999999877763 345447776554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-05 Score=83.42 Aligned_cols=220 Identities=11% Similarity=0.064 Sum_probs=128.5
Q ss_pred eEEEEECCCCCeEEeEec--CCCCCeEEEEEcCCCCeEEEEEC-CCcEEEEECCCCeeeE--EecCCCccEEEEEe-eCC
Q 014934 188 CVYLWNACSSKVTKLCDL--GIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRCKRVR--TMEGHRLRVGALAW-SSS 261 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~--~~~~~V~~v~~sp~g~~la~g~~-dg~V~iwd~~~~~~~~--~l~~h~~~V~~l~~-~~~ 261 (415)
.+.+||..+++...+... .+.....++++..+|+++++|+. ++.+.+||..+.+-.. .+........++.. ++.
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~ 299 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 299 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe
Confidence 589999999886554433 23344556788899999999984 4579999988764332 22222233344555 578
Q ss_pred EEEEEe-CC-----CcEEEEECCCCCccEEEecc-----ccCCeEEEEEeCCCCEEEEEeCCC---------cEEEEECC
Q 014934 262 LLSSGS-RD-----KSILQRDIRAQEDFVSKLSG-----HKSEVCGLKWSYDNRELASGGNDN---------RLFVWNQH 321 (415)
Q Consensus 262 ~l~sgs-~d-----g~I~iwd~~~~~~~~~~~~~-----h~~~V~~l~~spdg~~lasg~~dg---------~I~iwd~~ 321 (415)
+++.|+ .+ ..+.+||..+.. ...+.. ....-....+..++..++.|+.+| .+..||..
T Consensus 300 iyv~GG~~~~~~~~~~~e~yd~~t~~--W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 300 VFTIGGSWSGGVFEKNGEVYSPSSKT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred EEEEeCcccCCcccccceEeCCCCCc--ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 888888 44 569999998764 222210 000000011224555556665443 56788887
Q ss_pred CCceeEEeccCC---------CcEEEEEEcCCCCcEEEEEcCCC-C-----C---eEEEEECCCCcEEEEe--e--CCCC
Q 014934 322 STQPVLKYCEHT---------AAVKAIAWSPHLHGLLASGGGTA-D-----R---CIRFWNTTTNTHLSCM--D--TGSQ 379 (415)
Q Consensus 322 ~~~~~~~~~~h~---------~~V~~l~~sp~~~~llasggg~~-d-----~---~I~iwd~~t~~~~~~~--~--~~~~ 379 (415)
+.........+. ..-.++.|...+..+++.||... + . .|.+||..+....... . ....
T Consensus 378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~ 457 (656)
T 1k3i_A 378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART 457 (656)
T ss_dssp TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB
T ss_pred CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcc
Confidence 765443332221 12345556554556888876210 1 1 6888898877654432 1 1111
Q ss_pred EEEEEECCCCCeEEEEEecCC-----------CcEEEEECCCC
Q 014934 380 VCNLVWSKNVNELVSTHGYSQ-----------NQIIVWRYPTM 411 (415)
Q Consensus 380 V~~l~~s~~~~~l~s~~g~~d-----------g~I~vw~~~s~ 411 (415)
-.++...++++.++. |+.+ ..+.+||..+.
T Consensus 458 ~~~~~~l~~g~i~v~--GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 458 FHTSVVLPDGSTFIT--GGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp SCEEEECTTSCEEEE--CCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred cCCeEECCCCCEEEE--CCcccCcCcCCCCcccceEEEcCCCC
Confidence 234567789988888 5432 46889987553
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00025 Score=69.69 Aligned_cols=230 Identities=6% Similarity=-0.006 Sum_probs=133.2
Q ss_pred eeEeecCC---CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC-----cEEEEECCCC
Q 014934 170 LNLVDWSS---HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG-----KVQIWDASRC 240 (415)
Q Consensus 170 i~~l~ws~---~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg-----~V~iwd~~~~ 240 (415)
...|+|++ +..|.++ ..+.|+.++..++.+..+. .......+++|+++|+ |.++...+ .+...+....
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 45778886 2444444 4488999999888876654 3445789999999999 55544322 1333332211
Q ss_pred ee-eEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEec-cccCCeEEEEEeCCCCEEE-EEeCCCc
Q 014934 241 KR-VRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLS-GHKSEVCGLKWSYDNRELA-SGGNDNR 314 (415)
Q Consensus 241 ~~-~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~la-sg~~dg~ 314 (415)
.. ...+. .......++++ +.++++-..++.|+.+|..++......+. +....-..|+|+|+++.|. +-...+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 10 01111 11223345555 34444555677899999875542111111 1122335799999999554 4455688
Q ss_pred EEEEECC--CCce--eEEeccC---------------CCcEEEEEE---------cCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 315 LFVWNQH--STQP--VLKYCEH---------------TAAVKAIAW---------SPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 315 I~iwd~~--~~~~--~~~~~~h---------------~~~V~~l~~---------sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
|+.++.. ++.. ...+.+. -.....+++ .+++. |+++-. ....|+.++.
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~--~n~~I~~~~~- 372 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDR--DSHTVRVLTP- 372 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEET--TTTEEEEECT-
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEEC--CCCEEEEECC-
Confidence 9998865 2321 1122121 123577999 56654 777665 5788999985
Q ss_pred CCcEEEEeeCC------------------CCEEEEEEC-CCCCeEEEEEecCCCcEEEEECC
Q 014934 367 TNTHLSCMDTG------------------SQVCNLVWS-KNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 367 t~~~~~~~~~~------------------~~V~~l~~s-~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+|........+ .....++++ +++..+++ -...+.|+.++.+
T Consensus 373 ~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa--D~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG--DCDNHRVRKIAPE 432 (433)
T ss_dssp TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE--EGGGTEEEEEEEC
T ss_pred CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE--eCCCCEEEEEecC
Confidence 56443332211 236789999 66666555 5567788888764
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00033 Score=68.79 Aligned_cols=230 Identities=9% Similarity=0.069 Sum_probs=133.9
Q ss_pred eeEeecCC---CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC-C----cEEEEECCCCe
Q 014934 170 LNLVDWSS---HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-G----KVQIWDASRCK 241 (415)
Q Consensus 170 i~~l~ws~---~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d-g----~V~iwd~~~~~ 241 (415)
...|+|+| +++.++...+.|+.+|..++.+..+.. .......|+|+++|++|.++... + .+.+++. .+.
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 45667875 344444444789999998877666553 44678999999999966666542 2 2333443 222
Q ss_pred ee--EEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEE-EEEeCCCcE
Q 014934 242 RV--RTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL-ASGGNDNRL 315 (415)
Q Consensus 242 ~~--~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-asg~~dg~I 315 (415)
.. ..+.. ......+++++ .++++-..++.|..+|............+......+|+|+|+|++| ++-...+.|
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 11 22221 12234556653 4555555678899999876542111111122457789999999954 455567889
Q ss_pred EEEECCC--Cce--eEEeccC---------------CCcEE-EEEEc--------CCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 316 FVWNQHS--TQP--VLKYCEH---------------TAAVK-AIAWS--------PHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 316 ~iwd~~~--~~~--~~~~~~h---------------~~~V~-~l~~s--------p~~~~llasggg~~d~~I~iwd~~t 367 (415)
..++... ++. +..+.+. -.... .++.. +++ .|+++-. ....|+.++ .+
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~--~n~~I~~i~-~~ 370 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDR--ENHCIRILT-PQ 370 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEG--GGTEEEEEC-TT
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEEC--CCcEEEEEC-CC
Confidence 9987653 211 1222111 01123 45553 234 3666654 577899998 45
Q ss_pred CcEEEEeeC---------C---------CCEEEEEECCC-CCeEEEEEecCCCcEEEEECC
Q 014934 368 NTHLSCMDT---------G---------SQVCNLVWSKN-VNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 368 ~~~~~~~~~---------~---------~~V~~l~~s~~-~~~l~s~~g~~dg~I~vw~~~ 409 (415)
|........ . .....++++++ +..+++ -...+.|+.++.+
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa--D~~n~rIr~i~~e 429 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIG--DRENRRIRKIGYE 429 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEE--EGGGTEEEEEEEC
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEE--ECCCCeEEEEccC
Confidence 654433322 0 14789999995 554444 4566788887754
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0005 Score=62.29 Aligned_cols=196 Identities=7% Similarity=0.080 Sum_probs=125.4
Q ss_pred CCCCCCcceeEeecCC-Cc-EEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC
Q 014934 162 PALQDDFYLNLVDWSS-HN-VLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 162 ~~l~~~~~i~~l~ws~-~~-~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~ 238 (415)
|.+.++ +..++|+| ++ +.++. .++.|+..|.. +++.+.+.++.....-.|++.+++.++++.-.++.+.++++.
T Consensus 23 ~g~~~~--lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 23 AGITNN--ISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp TTCCSC--EEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred CCcccC--cceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 444443 78999998 44 55555 45789999998 888888776544678899999888776665567789999876
Q ss_pred CCee---eEEec------CCCccEEEEEeeC--CEEEEEeCCCcEEEEECCC--CCccEEEec-------cccCCeEEEE
Q 014934 239 RCKR---VRTME------GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRA--QEDFVSKLS-------GHKSEVCGLK 298 (415)
Q Consensus 239 ~~~~---~~~l~------~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~--~~~~~~~~~-------~h~~~V~~l~ 298 (415)
.... +.... ........|+|++ +.|+++.......+|.+.. ....+..+. .+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5432 22221 1344568999984 4565555444444444331 111122221 1234678999
Q ss_pred EeCCC-CEEEEEeCCCcEEEEECCCCceeEEeccCC---------CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 299 WSYDN-RELASGGNDNRLFVWNQHSTQPVLKYCEHT---------AAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 299 ~spdg-~~lasg~~dg~I~iwd~~~~~~~~~~~~h~---------~~V~~l~~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
++|.. .+++....++.|.++|.. ++.+..+.-.. ...-.|+|.++|+ |++++ +.+.++.+.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvs---E~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVS---EPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEE---TTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEc---CCceEEEEEe
Confidence 99954 455666777889999975 55555443221 2568899999996 77776 5667776654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00089 Score=63.67 Aligned_cols=200 Identities=11% Similarity=-0.002 Sum_probs=128.1
Q ss_pred eeEeecCC-CcEEEEE--cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeE-EEEECCCcEEEEECCCCeeeEE
Q 014934 170 LNLVDWSS-HNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 170 i~~l~ws~-~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~l-a~g~~dg~V~iwd~~~~~~~~~ 245 (415)
...++|++ ++.|..+ ..+.|+.++..++....+.. ..-.....+++.+.+..| ++-...+.|.+.++........
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l 153 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL 153 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe-CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE
Confidence 57889986 4544444 35789999998876555543 223456788998755544 4445567899999875433333
Q ss_pred ecCCCccEEEEEeeC--CEE-EEEeCC-CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEEC
Q 014934 246 MEGHRLRVGALAWSS--SLL-SSGSRD-KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQ 320 (415)
Q Consensus 246 l~~h~~~V~~l~~~~--~~l-~sgs~d-g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~-~dg~I~iwd~ 320 (415)
+.........+++++ ..| ++-... +.|...++..... .......-....+|+++|++..|..+. ..+.|..+|+
T Consensus 154 ~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~ 232 (349)
T 3v64_C 154 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 232 (349)
T ss_dssp ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 333445678888873 444 444444 7788888875442 222222334578999998776665554 5678999998
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
........+........++++. +..++.+.. ..+.|..+|..+|+.+..+.
T Consensus 233 dG~~~~~~~~~~~~~P~giav~--~~~ly~td~--~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 233 DGSHRKAVISQGLPHPFAITVF--EDSLYWTDW--HTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TSCSCEEEECSSCSSEEEEEEE--TTEEEEEET--TTTEEEEEETTTCCSCEEEE
T ss_pred CCCceEEEEeCCCCCceEEEEE--CCEEEEecC--CCCeEEEEEccCCCccEEec
Confidence 7544333333344566788883 345777765 67889999977777665554
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00033 Score=66.16 Aligned_cols=182 Identities=12% Similarity=0.180 Sum_probs=121.0
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCC---------EEEEEeC---CCcEEEEECCCCCccEEEe
Q 014934 220 NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSS---------LLSSGSR---DKSILQRDIRAQEDFVSKL 287 (415)
Q Consensus 220 g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~---------~l~sgs~---dg~I~iwd~~~~~~~~~~~ 287 (415)
..+++.....+-+.+||+ +++.+..+.. +++..+..-+. ++++..+ +++|.+|++......+..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 345555567788999999 7888888864 55666665432 3344444 4789999774222234444
Q ss_pred cc------cc-CCeEEEEE--eCC-CC-EEEEEeCCCcEEEEECC-------CCceeEEeccCCCcEEEEEEcCCCCcEE
Q 014934 288 SG------HK-SEVCGLKW--SYD-NR-ELASGGNDNRLFVWNQH-------STQPVLKYCEHTAAVKAIAWSPHLHGLL 349 (415)
Q Consensus 288 ~~------h~-~~V~~l~~--spd-g~-~lasg~~dg~I~iwd~~-------~~~~~~~~~~h~~~V~~l~~sp~~~~ll 349 (415)
.. .. ..+.++++ +|. +. ++++...+|.+..|++. +.+.+.+|.. ...+-.++..+....|+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence 21 11 56778888 774 44 57778888999999983 3356677743 45688888888777666
Q ss_pred EEEcCCCCCeEEEEECC-----CCcEEEEeeCC---CCEEEEEE--CCCCC-eEEEEEecCCCcEEEEECC
Q 014934 350 ASGGGTADRCIRFWNTT-----TNTHLSCMDTG---SQVCNLVW--SKNVN-ELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 350 asggg~~d~~I~iwd~~-----t~~~~~~~~~~---~~V~~l~~--s~~~~-~l~s~~g~~dg~I~vw~~~ 409 (415)
+.- ++.-|..++.. +++.+..+..+ ..+..|++ .++++ +|+++ .-.++.+.||+..
T Consensus 196 v~e---Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS-sQG~~s~~Vydr~ 262 (355)
T 3amr_A 196 IAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS-SQGNSSYAIYDRQ 262 (355)
T ss_dssp EEE---TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE-EGGGTEEEEEESS
T ss_pred Eec---ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE-cCCCCEEEEEECC
Confidence 644 67667777755 45566665433 46888887 55666 66664 3456799999986
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00072 Score=65.25 Aligned_cols=201 Identities=11% Similarity=-0.011 Sum_probs=128.8
Q ss_pred ceeEeecCC-CcEEEEE--cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeE-EEEECCCcEEEEECCCCeeeE
Q 014934 169 YLNLVDWSS-HNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~l-a~g~~dg~V~iwd~~~~~~~~ 244 (415)
....++|++ ++.|..+ ..+.|+.++..++....+.. ........+++.+.+..| ++-...+.|.+.++.......
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC-SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe-CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 367889986 4444444 45789999998876655543 222356778888755544 444456788888886543333
Q ss_pred EecCCCccEEEEEee--CCEEEEE-eCC-CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEE-eCCCcEEEEE
Q 014934 245 TMEGHRLRVGALAWS--SSLLSSG-SRD-KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASG-GNDNRLFVWN 319 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~--~~~l~sg-s~d-g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg-~~dg~I~iwd 319 (415)
.+.........|+++ +..|+.. ... +.|..+++..... .......-....+|+|+|++..|..+ ...+.|..+|
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d 274 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 274 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence 344344567888887 3444444 344 6788888876542 22333334457899999876666554 4567899999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 320 QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 320 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
+........+........+|++. +..++.+.. ..+.|..+|..+|+.+..+.
T Consensus 275 ~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~--~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 275 LDGSHRKAVISQGLPHPFAITVF--EDSLYWTDW--HTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTSCSCEEEECSSCSSEEEEEEE--TTEEEEEET--TTTEEEEEETTTCCSCEEEE
T ss_pred CCCCeeEEEEECCCCCceEEEEE--CCEEEEeeC--CCCeEEEEECCCCcceEEEc
Confidence 87544333343344567788883 335777765 67889999977887666665
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0017 Score=61.06 Aligned_cols=230 Identities=10% Similarity=0.053 Sum_probs=132.7
Q ss_pred CcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEec--CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDL--GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~--~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
+..+..|.++++.+++++..+.|+. ..+.++.-..... .....+..+.+.+++..++++ .+|.|.. ....++.-.
T Consensus 79 ~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~ 155 (327)
T 2xbg_A 79 DYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQ 155 (327)
T ss_dssp CCEEEEEEEETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEE
T ss_pred CccEEEEEecCCeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCE
Confidence 3457788888877778877776655 3344443222221 123467888887777766655 4564422 112232222
Q ss_pred E-ecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 245 T-MEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 245 ~-l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
. ...+...+..+++. +..++..+.+|.++.-+-..+......-......+..+.+.+++.+++. +.+|.+++.+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~ 234 (327)
T 2xbg_A 156 ALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDN 234 (327)
T ss_dssp EEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTE
T ss_pred EeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCC
Confidence 2 23455678888887 3444455566666554322122122222345567889999999876654 5678888775332
Q ss_pred CceeEEec-c---CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC----CCCEEEEEECCCCCeEEE
Q 014934 323 TQPVLKYC-E---HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT----GSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 323 ~~~~~~~~-~---h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~----~~~V~~l~~s~~~~~l~s 394 (415)
++.-..+. . +...+.++++.+++. +++.+. ++.| ++....|+.-..+.. ...+..+.|..++..+++
T Consensus 235 G~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~---~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~ 309 (327)
T 2xbg_A 235 SENWGELLSPLRRNSVGFLDLAYRTPNE-VWLAGG---AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFIL 309 (327)
T ss_dssp EEEECCCBCTTSSCCSCEEEEEESSSSC-EEEEES---TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEE
T ss_pred CCeeEeccCCcccCCcceEEEEecCCCE-EEEEeC---CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEE
Confidence 33222221 1 234588999998765 777663 6766 556666665555542 356788888766654444
Q ss_pred EEecCCCcEEEEEC
Q 014934 395 THGYSQNQIIVWRY 408 (415)
Q Consensus 395 ~~g~~dg~I~vw~~ 408 (415)
+.+|.|.-++-
T Consensus 310 ---G~~G~i~~~~~ 320 (327)
T 2xbg_A 310 ---GQKGILLRYVT 320 (327)
T ss_dssp ---CSTTEEEEECC
T ss_pred ---cCCceEEEEcC
Confidence 46887776653
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0011 Score=69.97 Aligned_cols=230 Identities=9% Similarity=-0.053 Sum_probs=148.1
Q ss_pred cceeEeecCCCcEEEEEcC-CeEEEEECCCCCeEEeEe-------c------CCCCCeEEEEEcCCCCeEEEEECCCcEE
Q 014934 168 FYLNLVDWSSHNVLAVGLG-NCVYLWNACSSKVTKLCD-------L------GIDDSVCSVGWANRNTHLAVGTSHGKVQ 233 (415)
Q Consensus 168 ~~i~~l~ws~~~~la~~~d-~~V~iwd~~~~~~~~~~~-------~------~~~~~V~~v~~sp~g~~la~g~~dg~V~ 233 (415)
..|.++...++..|-+|.. +.|++++..++....... . -....|.++....+|. |.+|+.++-|.
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~ 336 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGIN 336 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEE
Confidence 3577887777444555544 789999998876543322 0 1235799999988886 66788777799
Q ss_pred EEECCCCeeeEEec---------CCCccEEEEEeeC-CEEEEEeCCCcEEEEECCCCCccEEEe----ccccCCeEEEEE
Q 014934 234 IWDASRCKRVRTME---------GHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKL----SGHKSEVCGLKW 299 (415)
Q Consensus 234 iwd~~~~~~~~~l~---------~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~----~~h~~~V~~l~~ 299 (415)
.++..+........ .....|.++.... ..|..|+.++-|..+|..+.. ...+ ......|.++..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~v~~i~~ 414 (781)
T 3v9f_A 337 FISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRV--AIYNKENRELLSNSVLCSLK 414 (781)
T ss_dssp EECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEE--EECC-----CCCSBEEEEEE
T ss_pred EeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCe--EEEccCCCCCCCcceEEEEE
Confidence 99987654322110 1235688988873 678888877779999976432 1111 122356889988
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeEEec---cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC
Q 014934 300 SYDNRELASGGNDNRLFVWNQHSTQPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT 376 (415)
Q Consensus 300 spdg~~lasg~~dg~I~iwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~ 376 (415)
.++|.+.+ |+.++-|..+|..+++.. .+. .....|.++...+++. +.+.. . +-|..||..+++.......
T Consensus 415 d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~-lwigt---~-~Gl~~~~~~~~~~~~~~~~ 487 (781)
T 3v9f_A 415 DSEGNLWF-GTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKK-IWIGT---H-AGVFVIDLASKKVIHHYDT 487 (781)
T ss_dssp CTTSCEEE-EETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSE-EEEEE---T-TEEEEEESSSSSCCEEECT
T ss_pred CCCCCEEE-EeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCC-EEEEE---C-CceEEEeCCCCeEEecccC
Confidence 88877655 666667999998776533 332 1346799998888775 55532 3 5689999887765433221
Q ss_pred ------CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 377 ------GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 377 ------~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
...|.++...++|+..+.+ ..+-|..|+..+
T Consensus 488 ~~~~~~~~~i~~i~~d~~g~lWigt---~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 488 SNSQLLENFVRSIAQDSEGRFWIGT---FGGGVGIYTPDM 524 (781)
T ss_dssp TTSSCSCSCEEEEEECTTCCEEEEE---SSSCEEEECTTC
T ss_pred cccccccceeEEEEEcCCCCEEEEE---cCCCEEEEeCCC
Confidence 3578999999999877763 223466676543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00036 Score=71.24 Aligned_cols=192 Identities=11% Similarity=0.050 Sum_probs=118.9
Q ss_pred cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCe--------EEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCC
Q 014934 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSV--------CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR 250 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V--------~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~ 250 (415)
.+++.+.++.|+-+|..+|+..-.+........ ..+.+ .+..+++++.++.|.-+|..+++.+-......
T Consensus 70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~ 147 (582)
T 1flg_A 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFAD 147 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECSC
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCCC
Confidence 344444446699999999998766654321110 11222 35678888999999999999998876554221
Q ss_pred c----cEE-EEEeeCC------EEEEEe------CCCcEEEEECCCCCccEEEeccccC---------------------
Q 014934 251 L----RVG-ALAWSSS------LLSSGS------RDKSILQRDIRAQEDFVSKLSGHKS--------------------- 292 (415)
Q Consensus 251 ~----~V~-~l~~~~~------~l~sgs------~dg~I~iwd~~~~~~~~~~~~~h~~--------------------- 292 (415)
. .+. .....+. .+++++ .++.|+-+|..+++..- .......
T Consensus 148 ~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W-~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 148 HGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIW-MRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp GGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEE-EEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEe-ecCCCccccccccCcccccccccccccC
Confidence 0 111 1111123 666665 37899999999887432 2211000
Q ss_pred --------------------CeEEEEEeCCCCEEEEEeC--------------------C----CcEEEEECCCCceeEE
Q 014934 293 --------------------EVCGLKWSYDNRELASGGN--------------------D----NRLFVWNQHSTQPVLK 328 (415)
Q Consensus 293 --------------------~V~~l~~spdg~~lasg~~--------------------d----g~I~iwd~~~~~~~~~ 328 (415)
.-..++++|+..++..+.. | +.|.-+|..+++.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 0013566777777776653 2 5799999999999888
Q ss_pred ecc--CC--------CcEEEEEEc-CCCC--cEEEEEcCCCCCeEEEEECCCCcEEEEeeC
Q 014934 329 YCE--HT--------AAVKAIAWS-PHLH--GLLASGGGTADRCIRFWNTTTNTHLSCMDT 376 (415)
Q Consensus 329 ~~~--h~--------~~V~~l~~s-p~~~--~llasggg~~d~~I~iwd~~t~~~~~~~~~ 376 (415)
++. |. ..+. +... .+|+ .+++.++ .+|.++++|..+|+.+..+..
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHAD--RNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEES
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEEC--CCceEEEEECCCCCEeccccc
Confidence 753 32 1221 1221 4554 3566665 899999999999999877654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0042 Score=58.30 Aligned_cols=221 Identities=10% Similarity=0.054 Sum_probs=127.3
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEec---CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDL---GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~---~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
.+..|.+.+ +..++++..+.|+. ....++.-..... .....+.+|.+.+ +..+++ +..|.|.. ....++.-.
T Consensus 37 ~~~~v~~~~~~~~~~~G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~ 112 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVGVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWS 112 (327)
T ss_dssp CEEEEEESSSSCEEEEETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCE
T ss_pred cEEEEEECCCCcEEEEcCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCce
Confidence 577888876 77788887777643 3444432222211 1244688999976 444444 45664433 223233323
Q ss_pred Eec---CCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 245 TME---GHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 245 ~l~---~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
.+. .+...+..+.+. +..++.++.+|.|+.- ...+..-......+...+..+.+.+++.+++++...+..+-+|-
T Consensus 113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~ 191 (327)
T 2xbg_A 113 QIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP 191 (327)
T ss_dssp ECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT
T ss_pred ECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC
Confidence 222 234456777765 5555556667765432 22233223333455667899999999988877654443444442
Q ss_pred --CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-----CCCEEEEEECCCCCeEE
Q 014934 321 --HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-----GSQVCNLVWSKNVNELV 393 (415)
Q Consensus 321 --~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~-----~~~V~~l~~s~~~~~l~ 393 (415)
.+.+.+. ......+..+++.+++. +++.+ .++.+++.+...|+....+.. ...+..+.+.+++..++
T Consensus 192 gG~tW~~~~--~~~~~~~~~~~~~~~g~-~~~~~---~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~ 265 (327)
T 2xbg_A 192 GQTAWEPHN--RTTSRRLHNMGFTPDGR-LWMIV---NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWL 265 (327)
T ss_dssp TCSSCEEEE--CCSSSCEEEEEECTTSC-EEEEE---TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEE
T ss_pred CCCceeECC--CCCCCccceeEECCCCC-EEEEe---CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEE
Confidence 2333332 24566789999999886 66655 478887765333444333332 23588899998887776
Q ss_pred EEEecCCCcE
Q 014934 394 STHGYSQNQI 403 (415)
Q Consensus 394 s~~g~~dg~I 403 (415)
+ | .++.|
T Consensus 266 ~--g-~~g~i 272 (327)
T 2xbg_A 266 A--G-GAGAL 272 (327)
T ss_dssp E--E-STTCE
T ss_pred E--e-CCCeE
Confidence 6 4 35655
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.17 E-value=8e-05 Score=78.53 Aligned_cols=192 Identities=11% Similarity=0.058 Sum_probs=113.3
Q ss_pred CeEEEEEc-CCCCeEEEEEC-CC----cEEEEECCCC-eeeEE-ecCCCccEEEEEee--CCEEEEEeCC-----CcEEE
Q 014934 210 SVCSVGWA-NRNTHLAVGTS-HG----KVQIWDASRC-KRVRT-MEGHRLRVGALAWS--SSLLSSGSRD-----KSILQ 274 (415)
Q Consensus 210 ~V~~v~~s-p~g~~la~g~~-dg----~V~iwd~~~~-~~~~~-l~~h~~~V~~l~~~--~~~l~sgs~d-----g~I~i 274 (415)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+.. +. .....++|+ ++.|+....| ..|+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99999887654 33 4999999988 63211 11 113457887 3466655554 25888
Q ss_pred EECCCCCcc-EEEec-cccCCeEEEEEeCCCCEEEEEe---CCCcEEEEECCCCc-ee--EEec-cCCCcEEEEEEcCCC
Q 014934 275 RDIRAQEDF-VSKLS-GHKSEVCGLKWSYDNRELASGG---NDNRLFVWNQHSTQ-PV--LKYC-EHTAAVKAIAWSPHL 345 (415)
Q Consensus 275 wd~~~~~~~-~~~~~-~h~~~V~~l~~spdg~~lasg~---~dg~I~iwd~~~~~-~~--~~~~-~h~~~V~~l~~sp~~ 345 (415)
+++.+.... ...+. .......++.|+|||++|+... ....|+++|+.++. .. ..+. ........+.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 898776422 22222 2233467889999999988755 34479999998762 22 3333 3344556666554 4
Q ss_pred CcEEEEEcC--CCCCeEEEEECCCC-cEEE-EeeCCC--CEEEEEECCCCCeEEEEEecCCCc--EEEEEC
Q 014934 346 HGLLASGGG--TADRCIRFWNTTTN-THLS-CMDTGS--QVCNLVWSKNVNELVSTHGYSQNQ--IIVWRY 408 (415)
Q Consensus 346 ~~llasggg--~~d~~I~iwd~~t~-~~~~-~~~~~~--~V~~l~~s~~~~~l~s~~g~~dg~--I~vw~~ 408 (415)
..+++.... .....|..+|+.++ +... .+.+.. .+..+.+. +..|+.+ ...++. |.++++
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~-~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVA-GRRAGLTRIWTMMA 398 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEE-EEETTEEEEEEEEC
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEE-EEeCCEEEEEEEec
Confidence 556665531 12346888888753 2222 233333 34455554 5566654 445664 455554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0022 Score=60.01 Aligned_cols=184 Identities=11% Similarity=0.002 Sum_probs=119.2
Q ss_pred eEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC--C-EEEEEeCCCcEEEEECCCC---CccEEEeccccCCeE
Q 014934 222 HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--S-LLSSGSRDKSILQRDIRAQ---EDFVSKLSGHKSEVC 295 (415)
Q Consensus 222 ~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~-~l~sgs~dg~I~iwd~~~~---~~~~~~~~~h~~~V~ 295 (415)
+|+.+. ...|+..|+...+....+. ....+.+++|++ + ++++-..++.|..+++... ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344443 3568999998776555554 345678899983 3 4555556789999998761 212223332334568
Q ss_pred EEEEeCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 296 GLKWSYDNR-ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 296 ~l~~spdg~-~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
++++++.+. ++++-...+.|.++|+........+.........+++.|.+..++.+..+ ..+.|...++... ....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG~-~~~~~ 158 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGV-DIYSL 158 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSC-CEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCCC-CeEEE
Confidence 899997554 44555667899999987554333333344567899999987778887642 2378988888543 33333
Q ss_pred -e-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 375 -D-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 375 -~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
. .-.....++|++++..|..+ -...+.|..+++..
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~-D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNG 195 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTS
T ss_pred EECCCCCceEEEEeccCCEEEEE-ECCCCeEEEEecCC
Confidence 2 33567899999988877775 44567899999864
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-05 Score=84.54 Aligned_cols=225 Identities=9% Similarity=-0.067 Sum_probs=134.0
Q ss_pred cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCC----CeeeEEecCCCccE
Q 014934 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASR----CKRVRTMEGHRLRV 253 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~----~~~~~~l~~h~~~V 253 (415)
.+|.++....|+..++.+.+...+.. ....+..|+|.+.+..|.... ..+.|+.+++.. ......+.......
T Consensus 378 ~~ll~~~~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P 455 (699)
T 1n7d_A 378 AYLFFTNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 455 (699)
T ss_dssp CCBCCCCTTC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--C
T ss_pred eeEEecCccceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCc
Confidence 44555556788888888777655543 234677899998776666554 457899999875 22222222111223
Q ss_pred EEEEee--C-CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe-C-CCcEEEEECCCCceeEE
Q 014934 254 GALAWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG-N-DNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 254 ~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~-~-dg~I~iwd~~~~~~~~~ 328 (415)
..|++. + +++++-...+.|.++++.... ....+........+|+++|.+.+|+... . .+.|.++++........
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l 534 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 534 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence 445554 3 455555567889999987654 2222222234567899999665555443 2 36888888754332222
Q ss_pred eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC---CCCEEEEEECCCCCeEEEEEecCCCcEEE
Q 014934 329 YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (415)
Q Consensus 329 ~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~---~~~V~~l~~s~~~~~l~s~~g~~dg~I~v 405 (415)
+...-.....|+|+|++..|+++-. ..+.|..+++........+.. .....+|++..+ .|+.+ ....+.|..
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywt-d~~~~~V~~ 609 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWT-DIINEAIFS 609 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEET--TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEE-CSTTTCEEE
T ss_pred EeCCCCCccEEEEeccCCEEEEEec--CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEE-eCCCCeEEE
Confidence 2222345678999998888888876 678999999875433322221 123345555443 45443 356678888
Q ss_pred EECCCC
Q 014934 406 WRYPTM 411 (415)
Q Consensus 406 w~~~s~ 411 (415)
++..++
T Consensus 610 ~d~~~G 615 (699)
T 1n7d_A 610 ANRLTG 615 (699)
T ss_dssp EETTTE
T ss_pred EEccCC
Confidence 886544
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0028 Score=59.39 Aligned_cols=200 Identities=11% Similarity=-0.024 Sum_probs=125.5
Q ss_pred eeEeecCC-CcEEE-EE-cCCeEEEEECCCCCeE-EeEecCCCCCeEEEEEcCCCC-eEEEEECCCcEEEEECCCCeeeE
Q 014934 170 LNLVDWSS-HNVLA-VG-LGNCVYLWNACSSKVT-KLCDLGIDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 170 i~~l~ws~-~~~la-~~-~d~~V~iwd~~~~~~~-~~~~~~~~~~V~~v~~sp~g~-~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
...++|++ ++.|. +. ..+.|+.++..++... .+.. ..-.....+++.+.+. +.++-...+.|.++++.......
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV-SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE-ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc-CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 55788987 44444 44 4578999998776422 2222 1224567888887554 44444556789999986543332
Q ss_pred EecCCCccEEEEEeeC--CEEEEEe--CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEE
Q 014934 245 TMEGHRLRVGALAWSS--SLLSSGS--RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWN 319 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~--~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~-~dg~I~iwd 319 (415)
.+.........+++++ ..|+... ..+.|...++..... .......-....+|++++++..|..+. ..+.|..+|
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d 194 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 194 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence 3333445677888873 4555554 357888888875432 222222234578999999776665554 567899999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 320 QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 320 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
+........+.+......++++. +..++.+-. ..+.|..+|..+|+....+.
T Consensus 195 ~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~--~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 195 LDGTNRQAVVKGSLPHPFALTLF--EDILYWTDW--STHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTSCSCEEEECSCCSCEEEEEEE--TTEEEEEET--TTTEEEEEETTTCCSCEEEE
T ss_pred CCCCceEEEecCCCCCceEEEEe--CCEEEEEec--CCCeEEEEECCCCCceEEEe
Confidence 86543332333344566778875 335777765 67899999998887665554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0033 Score=60.88 Aligned_cols=185 Identities=12% Similarity=0.000 Sum_probs=122.9
Q ss_pred eEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CC-EEEEEeCCCcEEEEECCCCC---ccEEEeccccCCeE
Q 014934 222 HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SS-LLSSGSRDKSILQRDIRAQE---DFVSKLSGHKSEVC 295 (415)
Q Consensus 222 ~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~ 295 (415)
+|+.. ....|+..++........+. ....+..|+|+ .+ ++++-...+.|+.+++.... .....+........
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEe-ccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 44444 34678888887665444444 45668899998 34 44455567889999987521 12333333445688
Q ss_pred EEEEeCC-CCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 296 GLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 296 ~l~~spd-g~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
+|++.+. ++++++-...+.|.+.++........+........+|++.|.+..|+.+-.| ..+.|...++........+
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSCSCEEEE
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCCccEEEE
Confidence 9999984 5555555667899999987665544444445568999999987778887642 3478999998755443333
Q ss_pred eC-CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 375 DT-GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 375 ~~-~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
.. -.....|++++++..|..+ -...+.|..+++..
T Consensus 242 ~~~l~~P~glavd~~~~~lY~a-D~~~~~I~~~d~dG 277 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNG 277 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTS
T ss_pred ECCCCceEEEEEEeCCCEEEEE-ECCCCEEEEEeCCC
Confidence 33 3578899999988888775 34567899988864
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0035 Score=64.37 Aligned_cols=228 Identities=9% Similarity=-0.018 Sum_probs=136.5
Q ss_pred cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC-CCcEEEEECCCCee-eEEecCCCccEEEE
Q 014934 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRCKR-VRTMEGHRLRVGAL 256 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~-dg~V~iwd~~~~~~-~~~l~~h~~~V~~l 256 (415)
-+|..+....|+..++.............-..+..|+|++.+..|..... .+.|..+++..... ...+.........|
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl 89 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 89 (619)
T ss_dssp CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred ceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence 35666777889999887653212222233456899999997766665544 67788888865432 23333333456677
Q ss_pred Eee--CC-EEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeEEecc
Q 014934 257 AWS--SS-LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN--DNRLFVWNQHSTQPVLKYCE 331 (415)
Q Consensus 257 ~~~--~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~--dg~I~iwd~~~~~~~~~~~~ 331 (415)
+++ ++ ++++-...+.|.+.++..... .......-....+|+++|.+..|..... .+.|...++...........
T Consensus 90 AvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 90 ACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC
Confidence 766 34 555556678999999976542 2233234456788999997665555442 46788778764433333333
Q ss_pred CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 332 h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
.-.....|++.+++..|+++-. ..+.|...|+........+. ......++++..+ .|..+ ....+.|...|..+
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~t-d~~~~~V~~~d~~t 243 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWT-DWSTHSILACNKYT 243 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEET--TTCCEEEESSSCCEEC---------CCCEEESSS--EEEEE-CTTTCSEEEEESSS
T ss_pred CCCCCcEEEEEccCCEEEEEeC--CCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEe-cCCCCEEEEEECCC
Confidence 4556899999998877888875 67889999987543322222 1222345677655 45544 45667888888766
Q ss_pred Cc
Q 014934 411 MS 412 (415)
Q Consensus 411 ~~ 412 (415)
++
T Consensus 244 g~ 245 (619)
T 3s94_A 244 GE 245 (619)
T ss_dssp CC
T ss_pred Cc
Confidence 54
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00054 Score=70.95 Aligned_cols=219 Identities=9% Similarity=0.018 Sum_probs=124.1
Q ss_pred eecCC-CcEEEEEc--CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CC-----CcEEEEECCCCeee
Q 014934 173 VDWSS-HNVLAVGL--GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SH-----GKVQIWDASRCKRV 243 (415)
Q Consensus 173 l~ws~-~~~la~~~--d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~d-----g~V~iwd~~~~~~~ 243 (415)
+.+.. +.++++|. +..+++||..+++...+..+.....-.+++..++|+.+++|+ .+ ..+.+||..+.+-.
T Consensus 248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 34434 67777774 358999999988776655433333334556667999999998 34 46999999876533
Q ss_pred EE-------ecCCCccEEEEEeeCCEEEEEeCCC---------cEEEEECCCCCccEEEecccc---------CCeEEEE
Q 014934 244 RT-------MEGHRLRVGALAWSSSLLSSGSRDK---------SILQRDIRAQEDFVSKLSGHK---------SEVCGLK 298 (415)
Q Consensus 244 ~~-------l~~h~~~V~~l~~~~~~l~sgs~dg---------~I~iwd~~~~~~~~~~~~~h~---------~~V~~l~ 298 (415)
.. +...... ..+..++..++.|+.+| .+..||...... ......+. ..-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceEe
Confidence 22 0000000 00112244455555444 467888877652 22221111 1234444
Q ss_pred EeC-CCCEEEEEeCCC-----------cEEEEECCCCceeEEe--ccCCCcE-EEEEEcCCCCcEEEEEcCCC-------
Q 014934 299 WSY-DNRELASGGNDN-----------RLFVWNQHSTQPVLKY--CEHTAAV-KAIAWSPHLHGLLASGGGTA------- 356 (415)
Q Consensus 299 ~sp-dg~~lasg~~dg-----------~I~iwd~~~~~~~~~~--~~h~~~V-~~l~~sp~~~~llasggg~~------- 356 (415)
+.. ++++++.|+.++ .|.+||..+....... ..+.... .+.+..|+++ +++.||...
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~-i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS-TFITGGQRRGIPFEDS 484 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC-EEEECCBSBCCTTCCC
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC-EEEECCcccCcCcCCC
Confidence 543 778888887542 6888898776544332 1222222 3445667876 777775210
Q ss_pred --CCeEEEEECCCCcEEEEee--C-CCCEEEEEECCCCCeEEE
Q 014934 357 --DRCIRFWNTTTNTHLSCMD--T-GSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 357 --d~~I~iwd~~t~~~~~~~~--~-~~~V~~l~~s~~~~~l~s 394 (415)
-..+.+||..+++-...-. . ........+.++++.++.
T Consensus 485 ~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~ 527 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNG 527 (656)
T ss_dssp SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEE
T ss_pred CcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEec
Confidence 1568999998765432111 1 112234566789998888
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0029 Score=59.20 Aligned_cols=196 Identities=12% Similarity=0.114 Sum_probs=125.1
Q ss_pred CcceeEeecCC-CcEEEEE--cCCeEEEEECCCCCeEEeEecCC-----C--CCeEEEEE---cCCCCeEEEEEC-----
Q 014934 167 DFYLNLVDWSS-HNVLAVG--LGNCVYLWNACSSKVTKLCDLGI-----D--DSVCSVGW---ANRNTHLAVGTS----- 228 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~-----~--~~V~~v~~---sp~g~~la~g~~----- 228 (415)
..|..+++|++ ...+.++ ..+.|..|+...+....+ .+.. . ..+..|.| .|+|+++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 35677999988 4444444 479999999987766555 3332 1 13689999 688777776442
Q ss_pred --------CCcEEEEECC---CCeeeEEec--CC-----------CccEEEEEee--CCEEEEEeCC-CcEEEEECCCCC
Q 014934 229 --------HGKVQIWDAS---RCKRVRTME--GH-----------RLRVGALAWS--SSLLSSGSRD-KSILQRDIRAQE 281 (415)
Q Consensus 229 --------dg~V~iwd~~---~~~~~~~l~--~h-----------~~~V~~l~~~--~~~l~sgs~d-g~I~iwd~~~~~ 281 (415)
+..|..||+. +++.+.... .. ......|+.. ++..++++.- +.|...+.....
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 5679999998 777665443 11 1247788877 6788888887 888777776542
Q ss_pred ccEEEec------cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-eEEec--cC---CCcEEEE-EEcCCCCcE
Q 014934 282 DFVSKLS------GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP-VLKYC--EH---TAAVKAI-AWSPHLHGL 348 (415)
Q Consensus 282 ~~~~~~~------~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~-~~~~~--~h---~~~V~~l-~~sp~~~~l 348 (415)
+..+. ......++|+++|+|+.|++....|.|..+|+..... ..... +. -.....| .--.+|+.+
T Consensus 171 --~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 171 --VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp --EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred --EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 22211 1122367999999999999887799999999885432 01121 21 1223343 333456655
Q ss_pred EEEEcCCCCCeEEEEECCC
Q 014934 349 LASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 349 lasggg~~d~~I~iwd~~t 367 (415)
|++.+ ..+.+.+.+...
T Consensus 249 lV~~~--~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGAR--APYAISFRSWDN 265 (334)
T ss_dssp EEEEE--TTEEEEEECSST
T ss_pred EEEcC--CCCEEEEECCCC
Confidence 66665 466666666543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.017 Score=57.19 Aligned_cols=235 Identities=8% Similarity=0.024 Sum_probs=139.1
Q ss_pred eeEeecCC---CcEEEEEc-CCeEEEEECCCCCeEEeEecCC--CCCeEEEEE-------cCCCCeEEEEECCC-c----
Q 014934 170 LNLVDWSS---HNVLAVGL-GNCVYLWNACSSKVTKLCDLGI--DDSVCSVGW-------ANRNTHLAVGTSHG-K---- 231 (415)
Q Consensus 170 i~~l~ws~---~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~--~~~V~~v~~-------sp~g~~la~g~~dg-~---- 231 (415)
...|+++| ++++++.. .+.|++.|..++.+..+...+. ......|+| +++|++|.++...+ .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 55778886 34444443 3579999999988877765322 235899999 99999777776654 2
Q ss_pred --EEEEECCC-Ceee-----EEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECC-------CCCc------c----
Q 014934 232 --VQIWDASR-CKRV-----RTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIR-------AQED------F---- 283 (415)
Q Consensus 232 --V~iwd~~~-~~~~-----~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~-------~~~~------~---- 283 (415)
|.+++... +... ..+... .....++.++ .++++-..++.|..+|+. ++.. .
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 66665433 1211 122111 1223455553 455666677889999987 4431 0
Q ss_pred EEE-e-ccccCCeEEEEEeCCCCEEEE-EeCCCcEEEEEC--CCCce--eEEeccC---C------------CcEE-EEE
Q 014934 284 VSK-L-SGHKSEVCGLKWSYDNRELAS-GGNDNRLFVWNQ--HSTQP--VLKYCEH---T------------AAVK-AIA 340 (415)
Q Consensus 284 ~~~-~-~~h~~~V~~l~~spdg~~las-g~~dg~I~iwd~--~~~~~--~~~~~~h---~------------~~V~-~l~ 340 (415)
... + .+.......|+|+|+|+.|.. -...+.|+.+|. ..+.. ...+.+. . .... .++
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~ 379 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF 379 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence 111 1 122344678999999996444 456678988664 33321 1222221 0 1234 445
Q ss_pred Ec-------CCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC------------------------CCEEEEEECCC-
Q 014934 341 WS-------PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG------------------------SQVCNLVWSKN- 388 (415)
Q Consensus 341 ~s-------p~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~------------------------~~V~~l~~s~~- 388 (415)
.. +.+. |+++-. ....|+.++ .+|........+ .....|+++++
T Consensus 380 vd~~~~~~~~~g~-lyVaD~--~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 380 VKNPDYTGEEEYD-FYFVDR--LNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EECTTCCSSCCEE-EEEEEG--GGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EccccccccCCCe-EEEEEC--CCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 54 3443 666655 578999998 566433222221 23678999997
Q ss_pred CCeEEEEEecCCCcEEEEECCCC
Q 014934 389 VNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+..+++ -..++.|+.+++..-
T Consensus 456 g~lyVa--D~~N~rIrki~~~~~ 476 (496)
T 3kya_A 456 EMFYVH--DQVGHTIRTISMEQE 476 (496)
T ss_dssp TEEEEE--ETTTTEEEEEEECCC
T ss_pred CEEEEE--eCCCCEEEEEECCCC
Confidence 666665 566789999987653
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.011 Score=55.71 Aligned_cols=189 Identities=11% Similarity=0.172 Sum_probs=126.3
Q ss_pred cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCC----CCe--EEEEEC----CCcEEEEECC--CCeeeEEe
Q 014934 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR----NTH--LAVGTS----HGKVQIWDAS--RCKRVRTM 246 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~----g~~--la~g~~----dg~V~iwd~~--~~~~~~~l 246 (415)
.+|++...+.+++||+ +|+.+..+. .+.+..|..-|+ |+. +|.++. +++|.+|++. ++ .+..+
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i 116 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSM 116 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEEC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeec
Confidence 3555556789999999 778777764 256777777663 322 333333 4689999773 33 35444
Q ss_pred cC------CC-ccEEEEEe--eC---C-EEEEEeCCCcEEEEECCC---C---CccEEEeccccCCeEEEEEeCCCCEEE
Q 014934 247 EG------HR-LRVGALAW--SS---S-LLSSGSRDKSILQRDIRA---Q---EDFVSKLSGHKSEVCGLKWSYDNRELA 307 (415)
Q Consensus 247 ~~------h~-~~V~~l~~--~~---~-~l~sgs~dg~I~iwd~~~---~---~~~~~~~~~h~~~V~~l~~spdg~~la 307 (415)
.. .. ..+..++. ++ . ++++...+|.+..|++.. + .+.++.+.- ...+.++...+....|.
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence 22 11 34555665 42 2 688888999999999843 1 123445443 45788999999999999
Q ss_pred EEeCCCcEEEEECC-----CCceeEEec-cC-CCcEEEEEE--cCCCC-cEEEEEcCCCCCeEEEEECC-CCcEEEEee
Q 014934 308 SGGNDNRLFVWNQH-----STQPVLKYC-EH-TAAVKAIAW--SPHLH-GLLASGGGTADRCIRFWNTT-TNTHLSCMD 375 (415)
Q Consensus 308 sg~~dg~I~iwd~~-----~~~~~~~~~-~h-~~~V~~l~~--sp~~~-~llasggg~~d~~I~iwd~~-t~~~~~~~~ 375 (415)
.+-++.-|..+|.+ +++.+..+. ++ ...+..|++ .++++ +|++++- .+....+||.. +.+.+..+.
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ--G~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ--GNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG--GGTEEEEEESSTTCCEEEEEE
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC--CCCEEEEEECCCCCcEEEEEE
Confidence 99999778777855 344555542 22 347888888 55555 6888885 47899999997 677777764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0069 Score=59.31 Aligned_cols=192 Identities=6% Similarity=-0.062 Sum_probs=118.1
Q ss_pred CeEEEEEcCC--CCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCC-----cEEEEECCCC
Q 014934 210 SVCSVGWANR--NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDK-----SILQRDIRAQ 280 (415)
Q Consensus 210 ~V~~v~~sp~--g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg-----~I~iwd~~~~ 280 (415)
....|+|+|+ +..|.++...+.|+.+|..+++..... ........|+++ ++ |+.+...+ .+...+....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4678999985 445555555488999999877655443 345568888888 45 44444321 1333333222
Q ss_pred CccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeEEe-c-cCCCcEEEEEEcCCCCcEEEEEcCCCC
Q 014934 281 EDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQPVLKY-C-EHTAAVKAIAWSPHLHGLLASGGGTAD 357 (415)
Q Consensus 281 ~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~~~~~~~-~-~h~~~V~~l~~sp~~~~llasggg~~d 357 (415)
......+. ......+++++| +|.++++-..++.|+.+|..++.....+ . +....-..++|+|+++.|+++-. ..
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~--~~ 294 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN--GK 294 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET--TT
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC--CC
Confidence 11011111 234466788999 7776666667789999999877652222 1 12223357999999987888775 67
Q ss_pred CeEEEEECC--CCcEE--EEe-eC---------------CCCEEEEEE---------CCCCCeEEEEEecCCCcEEEEEC
Q 014934 358 RCIRFWNTT--TNTHL--SCM-DT---------------GSQVCNLVW---------SKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 358 ~~I~iwd~~--t~~~~--~~~-~~---------------~~~V~~l~~---------s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
+.|+.++.. ++... ..+ .. -.....+++ ..+|+.+++ -...+.|+.++.
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyva--D~~n~~I~~~~~ 372 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFC--DRDSHTVRVLTP 372 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEE--ETTTTEEEEECT
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEE--ECCCCEEEEECC
Confidence 899998865 33211 111 11 123667999 777776666 556778888873
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0018 Score=63.37 Aligned_cols=151 Identities=11% Similarity=0.065 Sum_probs=98.1
Q ss_pred cEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-CC----cEEEEECCCC
Q 014934 252 RVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-DN----RLFVWNQHST 323 (415)
Q Consensus 252 ~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-dg----~I~iwd~~~~ 323 (415)
....|++++ ..|+.+...+.|..+|+.... +..+.......++|+|+++|++|+++.. ++ .+.+++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 345677774 456666555889999987654 3344444567899999999996655554 22 3444443 33
Q ss_pred cee--EEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEecC
Q 014934 324 QPV--LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 324 ~~~--~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
... ..+.. ......++++|++..|+++-. .++.|..++..++....... .......++|+|+|++|..+ ...
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~--~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~-d~~ 290 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSW--NAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIV-VVN 290 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEET--TTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEE-ETT
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEEC--CCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEE-ECC
Confidence 221 22221 234567889995445887765 57899999998776422222 33457889999999966654 456
Q ss_pred CCcEEEEECC
Q 014934 400 QNQIIVWRYP 409 (415)
Q Consensus 400 dg~I~vw~~~ 409 (415)
.+.|..+++.
T Consensus 291 ~~~I~~~~~d 300 (430)
T 3tc9_A 291 QHYILRSDYD 300 (430)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEeCC
Confidence 7899998875
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.017 Score=60.95 Aligned_cols=185 Identities=12% Similarity=0.019 Sum_probs=120.9
Q ss_pred eEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCC---ccEEEeccccCCeE
Q 014934 222 HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQE---DFVSKLSGHKSEVC 295 (415)
Q Consensus 222 ~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~ 295 (415)
+|+. +....|+..++........+. ....+.+|+|+. .++++-...+.|+.+++.... .....+........
T Consensus 397 ~Ll~-an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFF-TNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEE-ECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccc-ccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 3443 344568888887655444444 345677888873 355555667789999987531 12333333445678
Q ss_pred EEEEeCCCCEE-EEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 296 GLKWSYDNREL-ASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 296 ~l~~spdg~~l-asg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
+|++.+.++.| ++-...+.|.+.++........+........+|++.|.+..|+.+-.| ..+.|...++........+
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEEEEE
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCCceEEEE
Confidence 89999877554 555567899999997654433343445568999999987778887642 3478999998755544444
Q ss_pred eCC-CCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 375 DTG-SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 375 ~~~-~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
..+ ....+|++++.+..|..+ -...+.|...++..
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwa-D~~~~~I~~~d~dG 589 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNG 589 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTS
T ss_pred eCCCCCceEEEEecCCCeEEEE-eCCCCcEEEEecCC
Confidence 333 578899999887777775 34567888888754
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.052 Score=52.49 Aligned_cols=229 Identities=10% Similarity=0.060 Sum_probs=149.4
Q ss_pred CCCcEEEEEc----CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCc
Q 014934 176 SSHNVLAVGL----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL 251 (415)
Q Consensus 176 s~~~~la~~~----d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~ 251 (415)
.+++++.+-. +..|.|.|+..+.......... -+.-.+|..+.||.=. ..+++|+|+++...+..+.- ..
T Consensus 33 ESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e 106 (494)
T 1bpo_A 33 ESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TD 106 (494)
T ss_dssp EETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCC----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SS
T ss_pred ecCceEEEEecCCCCCeEEEEECCCCCcceeccccc----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CC
Confidence 3355666542 2478888887765443332222 2345678888888765 67899999999888887774 44
Q ss_pred cEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEecccc----CCeEEEEEeCCCCEEEEEeC-------CCcEEEEE
Q 014934 252 RVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK----SEVCGLKWSYDNRELASGGN-------DNRLFVWN 319 (415)
Q Consensus 252 ~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~----~~V~~l~~spdg~~lasg~~-------dg~I~iwd 319 (415)
.|.--.|- ++.|+-.+ +..|+.|++.....+++.+..|. ..|..-..+++.++++..|- .|.+.+|.
T Consensus 107 ~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS 185 (494)
T 1bpo_A 107 DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYS 185 (494)
T ss_dssp CCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred CceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEee
Confidence 56667775 67776664 56799999987666777776653 45777788999999876442 36788998
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCC--CcEEEEEcC-CCCCeEEEEECCCC---c---EEEEee-------CCCCEEEE
Q 014934 320 QHSTQPVLKYCEHTAAVKAIAWSPHL--HGLLASGGG-TADRCIRFWNTTTN---T---HLSCMD-------TGSQVCNL 383 (415)
Q Consensus 320 ~~~~~~~~~~~~h~~~V~~l~~sp~~--~~llasggg-~~d~~I~iwd~~t~---~---~~~~~~-------~~~~V~~l 383 (415)
.+.+ .-+.+++|.+....+...-+. ..+++-+.. ...+.++|.++... . ....++ ....-.++
T Consensus 186 ~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvam 264 (494)
T 1bpo_A 186 VDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (494)
T ss_dssp STTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEE
T ss_pred cccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEE
Confidence 8654 456778887766555443221 224444431 12378888888532 1 111121 13445678
Q ss_pred EECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 384 VWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 384 ~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
..++....+.. -..-|-|++||+.++..+
T Consensus 265 qvs~kygviyv--iTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 265 QISEKHDVVFL--ITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEETTTTEEEE--EETTSEEEEEETTTCCEE
T ss_pred EecccCCEEEE--EecCceEEEEecccceee
Confidence 88887777666 357899999999998765
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.041 Score=53.16 Aligned_cols=192 Identities=13% Similarity=0.140 Sum_probs=129.3
Q ss_pred eeEeecCCCcEEEEEcCCeEEEEECCC-CCeEEeEecCC----CCCeEEEEEcCCCCeEEEEEC-------CCcEEEEEC
Q 014934 170 LNLVDWSSHNVLAVGLGNCVYLWNACS-SKVTKLCDLGI----DDSVCSVGWANRNTHLAVGTS-------HGKVQIWDA 237 (415)
Q Consensus 170 i~~l~ws~~~~la~~~d~~V~iwd~~~-~~~~~~~~~~~----~~~V~~v~~sp~g~~la~g~~-------dg~V~iwd~ 237 (415)
|.--.|=..+.|+.-.+..||-|++.. ....+.++ .| ...|..-..+++.++++..+- .|.+++|..
T Consensus 108 VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFd-R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~ 186 (494)
T 1bpo_A 108 VTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 186 (494)
T ss_dssp CCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEE-CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEES
T ss_pred ceEEEecCCCeEEEEcCCeeEEecccCCCCchhhee-cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeec
Confidence 445578778889999999999999975 35666665 22 356777788889997765432 478999998
Q ss_pred CCCeeeEEecCCCccEEEEEeeC-----CEEEEEeCC---CcEEEEECCCC---C-----ccEEEecc---ccCCeEEEE
Q 014934 238 SRCKRVRTMEGHRLRVGALAWSS-----SLLSSGSRD---KSILQRDIRAQ---E-----DFVSKLSG---HKSEVCGLK 298 (415)
Q Consensus 238 ~~~~~~~~l~~h~~~V~~l~~~~-----~~l~sgs~d---g~I~iwd~~~~---~-----~~~~~~~~---h~~~V~~l~ 298 (415)
+.. .-+.+++|.+....+...+ .+++.+.+. +.+++.++... . +.+..+.. -..---++.
T Consensus 187 er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamq 265 (494)
T 1bpo_A 187 DRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ 265 (494)
T ss_dssp TTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEE
T ss_pred ccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEE
Confidence 764 4567889988777777663 245555543 78999998654 1 11111111 122345688
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 299 WSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 299 ~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
.++.-..+..-..-|.|++||+.++.++..-+-....|..-+-......+++.. ..|.|.--.+.
T Consensus 266 vs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vn---r~GqVl~v~v~ 330 (494)
T 1bpo_A 266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN---RKGQVLSVCVE 330 (494)
T ss_dssp EETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEE---TTCEEEEEEEC
T ss_pred ecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEc---cCceEEEEEEc
Confidence 888888899999999999999999999887655555555555544444455544 35554444443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0035 Score=57.70 Aligned_cols=214 Identities=14% Similarity=0.084 Sum_probs=112.0
Q ss_pred CeEEEEECCCCCeEEeEecCCC-CCeEEEEEcCCCCeEEEEECC-----CcEEEEECCCCe-----eeEEecCCCccEEE
Q 014934 187 NCVYLWNACSSKVTKLCDLGID-DSVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCK-----RVRTMEGHRLRVGA 255 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~-~~V~~v~~sp~g~~la~g~~d-----g~V~iwd~~~~~-----~~~~l~~h~~~V~~ 255 (415)
..+++||..+.+...+..+... .....+. .++..++.|+.+ ..+.+||..+.+ .+..+........+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 4699999998876655433221 1222222 357777777754 368999987654 33223222222333
Q ss_pred EEeeCCEEEEEeCCC-----cEEEEECCCCCcc-EEEeccccCCeEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCc
Q 014934 256 LAWSSSLLSSGSRDK-----SILQRDIRAQEDF-VSKLSGHKSEVCGLKWSYDNRELASGGND-----NRLFVWNQHSTQ 324 (415)
Q Consensus 256 l~~~~~~l~sgs~dg-----~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg~~lasg~~d-----g~I~iwd~~~~~ 324 (415)
+..++.+++.|+.++ .+.+||+.+..-. +..+......-..+. -++++++.|+.+ +.+.+||+.+.+
T Consensus 109 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 109 TTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGH 186 (301)
T ss_dssp EEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred EEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCc
Confidence 444566777776543 5888998776511 111111111112222 267777887754 468999988764
Q ss_pred eeEE--eccCCCcEEEEEEcCCCCcEEEEEcCCC---CCeEEEEECCCCcEEEEeeC--C-CCEEEEEECCCCCeEEEEE
Q 014934 325 PVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTA---DRCIRFWNTTTNTHLSCMDT--G-SQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 325 ~~~~--~~~h~~~V~~l~~sp~~~~llasggg~~---d~~I~iwd~~t~~~~~~~~~--~-~~V~~l~~s~~~~~l~s~~ 396 (415)
-... +........++.+ +..+++.||... -..+.+||+.+.+-...-.. . .....+.+ +++.++.
T Consensus 187 W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~-- 259 (301)
T 2vpj_A 187 WTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAI-- 259 (301)
T ss_dssp EEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE--
T ss_pred EEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEE--
Confidence 3322 1111111122222 335777775211 25689999988764332211 1 11122222 4555554
Q ss_pred ecCC-----CcEEEEECCCC
Q 014934 397 GYSQ-----NQIIVWRYPTM 411 (415)
Q Consensus 397 g~~d-----g~I~vw~~~s~ 411 (415)
|+.+ +.|.+||..+.
T Consensus 260 GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 260 AGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CCBCSSSBEEEEEEEETTTT
T ss_pred cCcCCCcccccEEEEcCCCC
Confidence 4443 46778887653
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.091 Score=53.80 Aligned_cols=228 Identities=7% Similarity=-0.056 Sum_probs=135.7
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeE-ecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCeeeEEecCCCccEEE
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLC-DLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVRTMEGHRLRVGA 255 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~-~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~~~~l~~h~~~V~~ 255 (415)
..+|.++..+.|+..++......... .+..-..+.+|+|.+.+..|..+. ..+.|..+++........+.........
T Consensus 317 ~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~G 396 (619)
T 3s94_A 317 TELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDG 396 (619)
T ss_dssp SEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred ceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCc
Confidence 55777887788888888766532222 222235688999998665555544 5778999988754333333332234445
Q ss_pred EEee--C-CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe--CCCcEEEEECCCCceeEEec
Q 014934 256 LAWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG--NDNRLFVWNQHSTQPVLKYC 330 (415)
Q Consensus 256 l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~--~dg~I~iwd~~~~~~~~~~~ 330 (415)
|+++ + ++.++-+..+.|.+.++..... .......-....+|++.|....|.... ..+.|...++..........
T Consensus 397 lAvD~~~~~lY~tD~~~~~I~v~~~~G~~~-~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~ 475 (619)
T 3s94_A 397 IAVDWVARNLYWTDTGTDRIEVTRLNGTMR-KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVN 475 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred eEEecccCcEEEEeCCCCcEEEEeCCCCeE-EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEe
Confidence 5554 4 4555556678899999876542 222333345688999999744544443 34678777775443332333
Q ss_pred cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 331 EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 331 ~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
..-.....|++.+.+..|+.+-. ..+.|..+++........+. ......+++...+ .|..+ -...+.|...+..
T Consensus 476 ~~l~~P~GlalD~~~~~LY~aD~--~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~--~ly~t-D~~~~~I~~~~k~ 550 (619)
T 3s94_A 476 TSLGWPNGLALDYDEGKIYWGDA--KTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD--YVYWT-DWQRRSIERVHKR 550 (619)
T ss_dssp SSCSCEEEEEEETTTTEEEEEET--TTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT--EEEEE-CTTSSCEEEEESS
T ss_pred CCCCCCeeeEEcccCCEEEEEEC--CCCEEEEEecCCCceEEEeccCCCCcEEEEEECC--EEEEe-ecCCCeEEEEEcC
Confidence 34567889999998777888765 57889999986443222221 1122334454432 44443 3344555555544
Q ss_pred CC
Q 014934 410 TM 411 (415)
Q Consensus 410 s~ 411 (415)
++
T Consensus 551 ~g 552 (619)
T 3s94_A 551 SA 552 (619)
T ss_dssp SC
T ss_pred CC
Confidence 43
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.067 Score=50.57 Aligned_cols=218 Identities=10% Similarity=0.076 Sum_probs=121.2
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEec----CCCCCeEEEEEcCC---CCeEEEEEC-C-----CcEEEE
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDL----GIDDSVCSVGWANR---NTHLAVGTS-H-----GKVQIW 235 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~----~~~~~V~~v~~sp~---g~~la~g~~-d-----g~V~iw 235 (415)
...++|.| ++++++-.++.|++++ +++...+..+ ........|+|+|+ +..|.++.. . +.|..|
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 56889998 6777776779999998 4543333222 12457899999998 555555443 2 568888
Q ss_pred ECCCC-----ee-eEEec---CCCccEEEEEee--CCEEEEEeC-------------CCcEEEEECCCC-----------
Q 014934 236 DASRC-----KR-VRTME---GHRLRVGALAWS--SSLLSSGSR-------------DKSILQRDIRAQ----------- 280 (415)
Q Consensus 236 d~~~~-----~~-~~~l~---~h~~~V~~l~~~--~~~l~sgs~-------------dg~I~iwd~~~~----------- 280 (415)
+.... +. +..+. +.......|+|. +.+.++.+. .|.|..+|....
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~ 190 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRR 190 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCT
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCC
Confidence 87643 11 12233 111223577886 344443221 256666666531
Q ss_pred -CccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCc--------EEEEECCC----------------CceeEEeccCCC
Q 014934 281 -EDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNR--------LFVWNQHS----------------TQPVLKYCEHTA 334 (415)
Q Consensus 281 -~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~--------I~iwd~~~----------------~~~~~~~~~h~~ 334 (415)
........+|. ...+++|+| +++++++-...+. |.+...-. ..++..+ .+..
T Consensus 191 ~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~~ 268 (352)
T 2ism_A 191 GARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQGF 268 (352)
T ss_dssp TSCTTEEEECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TTCC
T ss_pred CCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CCCC
Confidence 00111122332 366789999 6776665333232 44432211 1234444 2334
Q ss_pred cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-------EEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-------HLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 335 ~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-------~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
....++| .++. ++++.- ..+.|...++.... ....+.....+..+++.|+|..++++
T Consensus 269 ap~G~~~-~~G~-l~v~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 269 PPGNLAF-FRGD-LYVAGL--RGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp CEEEEEE-ETTE-EEEEET--TTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCcceEE-ECCE-EEEEEC--CCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 5677888 3443 666553 56778877775432 11122344678999999999877775
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.01 Score=54.64 Aligned_cols=220 Identities=12% Similarity=0.017 Sum_probs=116.3
Q ss_pred cEEEEEc---CCeEEEEECCCCCeEEeEecCC-CCCeEEEEEcCCCCeEEEEECC----CcEEEEECCCCee--eEEecC
Q 014934 179 NVLAVGL---GNCVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRNTHLAVGTSH----GKVQIWDASRCKR--VRTMEG 248 (415)
Q Consensus 179 ~~la~~~---d~~V~iwd~~~~~~~~~~~~~~-~~~V~~v~~sp~g~~la~g~~d----g~V~iwd~~~~~~--~~~l~~ 248 (415)
.++++|. .+.+++||..+++...+-.... ...-..+. -++..++.|+.+ ..+.+||..+.+- +..+..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 3455553 3579999999988766544322 12222222 367777777754 5688999987653 222322
Q ss_pred CCccEEEEEeeCCEEEEEeCC------CcEEEEECCCCCccEEEeccc---cCCeEEEEEeCCCCEEEEEeC--------
Q 014934 249 HRLRVGALAWSSSLLSSGSRD------KSILQRDIRAQEDFVSKLSGH---KSEVCGLKWSYDNRELASGGN-------- 311 (415)
Q Consensus 249 h~~~V~~l~~~~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~h---~~~V~~l~~spdg~~lasg~~-------- 311 (415)
.......+...+.+++.|+.+ ..+.+||+.+.. ...+... ...-..+. -++++++.|+.
T Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES--WHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE--EEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCE
T ss_pred cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc--eEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCccc
Confidence 222233344456777777765 468899988764 2222111 11111222 26677777763
Q ss_pred -CCcEEEEECCCCceeEE--eccCCCcEEEEEEcCCCCcEEEEEcCCC---CCeEEEEECCCCcEEEEeeCC---CCEEE
Q 014934 312 -DNRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTA---DRCIRFWNTTTNTHLSCMDTG---SQVCN 382 (415)
Q Consensus 312 -dg~I~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~llasggg~~---d~~I~iwd~~t~~~~~~~~~~---~~V~~ 382 (415)
-+.+.+||+.+.+-... +.........+.+ + ..+++.||... -..+.+||+.+.+-...-... .....
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV--K-DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T-TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEE--C-CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 34589999987743222 1111111122222 3 34777775211 246889999887533221111 11222
Q ss_pred EEECCCCCeEEEEEecC-----CCcEEEEECCCC
Q 014934 383 LVWSKNVNELVSTHGYS-----QNQIIVWRYPTM 411 (415)
Q Consensus 383 l~~s~~~~~l~s~~g~~-----dg~I~vw~~~s~ 411 (415)
+.+ ++..++. |+. -+.+.+||..+.
T Consensus 244 ~~~--~~~i~v~--GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 244 AAV--GSIVYVL--AGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEE--TTEEEEE--ECBCSSSBCCEEEEEETTTT
T ss_pred EEE--CCEEEEE--eCcCCCeeeeeEEEEcCCCC
Confidence 222 4555555 443 246888887664
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.026 Score=55.93 Aligned_cols=153 Identities=9% Similarity=0.043 Sum_probs=96.2
Q ss_pred CeEEEEEcC-CCCeEEEE-ECCCcEEEEECCCCeeeEEecC---CCccEEEEEe-------e--CCEEEEEeCCC-----
Q 014934 210 SVCSVGWAN-RNTHLAVG-TSHGKVQIWDASRCKRVRTMEG---HRLRVGALAW-------S--SSLLSSGSRDK----- 270 (415)
Q Consensus 210 ~V~~v~~sp-~g~~la~g-~~dg~V~iwd~~~~~~~~~l~~---h~~~V~~l~~-------~--~~~l~sgs~dg----- 270 (415)
....|+|.| ++..|.++ ...+.|++.|++++........ .......|+| + ++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 577899998 34444444 4446799999988766554432 2246889999 5 56566665554
Q ss_pred --cEEEEECCCCCccE-----EEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECC-------CCce----------
Q 014934 271 --SILQRDIRAQEDFV-----SKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQH-------STQP---------- 325 (415)
Q Consensus 271 --~I~iwd~~~~~~~~-----~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~-------~~~~---------- 325 (415)
.|.+++........ ..+... ....+++++| ++.++++-..++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 26667643311111 222222 2456788999 55556666678889999987 4543
Q ss_pred -eEE-ec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 326 -VLK-YC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 326 -~~~-~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
... +. +.......|+|+|++..|+++-. ....|+.++.
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~--~~h~I~kid~ 339 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVI--NNHYFMRSDY 339 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEET--TTTEEEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeC--CCCEEEEEec
Confidence 112 11 22344689999999987777765 6788998654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.13 Score=52.68 Aligned_cols=228 Identities=9% Similarity=-0.019 Sum_probs=138.2
Q ss_pred CcEEEEEcCCeEEEEECCCCCeE-EeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCeeeEEecC------C
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVT-KLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVRTMEG------H 249 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~-~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~~~~l~~------h 249 (415)
..+|.++....|+-..+...... ..+....-..+.+|+|.+.+..|.... ..+.|+.++.........+.. .
T Consensus 308 ~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~ 387 (628)
T 4a0p_A 308 TTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNL 387 (628)
T ss_dssp SSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------
T ss_pred cceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccc
Confidence 45677777777776665543211 112222335688999998766666554 467788888764332223322 2
Q ss_pred CccEEEEEee--CC-EEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCC--cEEEEECCCC
Q 014934 250 RLRVGALAWS--SS-LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDN--RLFVWNQHST 323 (415)
Q Consensus 250 ~~~V~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg--~I~iwd~~~~ 323 (415)
...+..|+++ ++ +.++-+..+.|.+.++.... ....+........+|++.| .|.++.+-.... .|...++...
T Consensus 388 ~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~-~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~ 466 (628)
T 4a0p_A 388 EIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRS-VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT 466 (628)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCE-EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC
T ss_pred cCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCe-EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC
Confidence 3356777776 44 55666778889999986442 2222333446789999999 555555533332 6777777544
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEecCCC
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQN 401 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg 401 (415)
.........-.....|++.+.+..|+.+-. ..+.|...++.... ...+. ......+++... + .|..+ -...+
T Consensus 467 ~~~~l~~~~l~~P~gla~D~~~~~LYw~D~--~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~-~-~ly~t-D~~~~ 540 (628)
T 4a0p_A 467 EREVLFFSGLSKPIALALDSRLGKLFWADS--DLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFE-N-WLYWI-DKQQQ 540 (628)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCS-CEEEECSSCSCEEEEEEET-T-EEEEE-ETTTT
T ss_pred CcEEEEeccCCCccEEEEeCCCCEEEEEeC--CCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC-C-EEEEE-ECCCC
Confidence 333333334456799999998877888765 57899999985433 33332 234567777755 3 44443 34556
Q ss_pred cEEEEECCCCc
Q 014934 402 QIIVWRYPTMS 412 (415)
Q Consensus 402 ~I~vw~~~s~~ 412 (415)
.|...+-.+++
T Consensus 541 ~i~~~~k~~G~ 551 (628)
T 4a0p_A 541 MIEKIDMTGRE 551 (628)
T ss_dssp EEEEEETTSSS
T ss_pred eEEEEECcCCC
Confidence 77776665443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0077 Score=55.41 Aligned_cols=214 Identities=16% Similarity=0.168 Sum_probs=110.5
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC-----CcEEEEECCCCeee--EEecCCCccEEEEEee
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCKRV--RTMEGHRLRVGALAWS 259 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d-----g~V~iwd~~~~~~~--~~l~~h~~~V~~l~~~ 259 (415)
..+..||..+.+...+-.+.....-.+++. -++..++.|+.+ ..+.+||..+.+-. ..+.........+.+.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~ 108 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLN 108 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEEC
Confidence 468999998887665543322111112222 267777777754 35889998876422 2222222233344456
Q ss_pred CCEEEEEeCCC-----cEEEEECCCCCccEEEeccccCC--eEEEEEeCCCCEEEEEeCC-------CcEEEEECCCCce
Q 014934 260 SSLLSSGSRDK-----SILQRDIRAQEDFVSKLSGHKSE--VCGLKWSYDNRELASGGND-------NRLFVWNQHSTQP 325 (415)
Q Consensus 260 ~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~h~~~--V~~l~~spdg~~lasg~~d-------g~I~iwd~~~~~~ 325 (415)
+.+++.|+.++ .+.+||+.+.. ...+.....+ -.+++. -++++++.|+.+ +.+.+||+.+.+-
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSNE--WFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTTE--EEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCCe--EeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 77777787654 47788887664 2222211111 112222 266777777643 4589999987643
Q ss_pred eEE--eccCCCcEEEEEEcCCCCcEEEEEcCCC---CCeEEEEECCCCcEEEEeeCC---CCEEEEEECCCCCeEEEEEe
Q 014934 326 VLK--YCEHTAAVKAIAWSPHLHGLLASGGGTA---DRCIRFWNTTTNTHLSCMDTG---SQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 326 ~~~--~~~h~~~V~~l~~sp~~~~llasggg~~---d~~I~iwd~~t~~~~~~~~~~---~~V~~l~~s~~~~~l~s~~g 397 (415)
... +.........+.+ +..+++.||... ...+.+||+.+.+-...-... .....+.+ +++.++. |
T Consensus 186 ~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~--G 258 (302)
T 2xn4_A 186 TYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVV--G 258 (302)
T ss_dssp EEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE--C
T ss_pred EECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEE--C
Confidence 322 1111111122222 235777775211 246899999887543322111 11111222 4555555 4
Q ss_pred cCC-----CcEEEEECCCC
Q 014934 398 YSQ-----NQIIVWRYPTM 411 (415)
Q Consensus 398 ~~d-----g~I~vw~~~s~ 411 (415)
+.+ +.+.+||..+.
T Consensus 259 G~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 259 GDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CBCSSSBCCCEEEEETTTT
T ss_pred CcCCCcccccEEEEcCCCC
Confidence 433 35888887653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00083 Score=70.12 Aligned_cols=201 Identities=9% Similarity=-0.030 Sum_probs=115.9
Q ss_pred eeEeecCC-CcEEEEE--cCCeEEEEECCC----CCeEEeEecCCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCCCe
Q 014934 170 LNLVDWSS-HNVLAVG--LGNCVYLWNACS----SKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 170 i~~l~ws~-~~~la~~--~d~~V~iwd~~~----~~~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~~~ 241 (415)
+..|+|++ ++.|.++ ..+.|+.+++.+ .....++. ..-.....|++.+.+ .++++-...+.|.++++....
T Consensus 408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~-~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC-SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe-CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 55778887 5555555 346888888875 22222221 112245667887544 444444456789999987544
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEEe-C-CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEE-EEEeCCCcEE
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSGS-R-DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL-ASGGNDNRLF 316 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sgs-~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-asg~~dg~I~ 316 (415)
....+.........|+++ +..|+... . .+.|..+++..... .......-....+|+|+|++..| ++-...+.|.
T Consensus 487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 333333223345566775 23443333 2 26788887765432 12222223456789999875554 4445667899
Q ss_pred EEECCCCceeEEecc--CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC
Q 014934 317 VWNQHSTQPVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT 376 (415)
Q Consensus 317 iwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~ 376 (415)
++|+........+.. ......+|++.. ..++++.. ..+.|..+|..+|+.+..+..
T Consensus 566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywtd~--~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDI--INEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp EECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEECS--TTTCEEEEETTTEEEEECCCT
T ss_pred EEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEEeC--CCCeEEEEEccCCCceEEeec
Confidence 999865433222221 122334556644 35777765 678999999988888777653
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.042 Score=52.13 Aligned_cols=163 Identities=12% Similarity=0.072 Sum_probs=100.3
Q ss_pred CCCcEEEEECCCC--e--eeEEecC-----CCccEEEEEee----CC-EEEEE-eC--CCcEEEEECCCCCcc---EEEe
Q 014934 228 SHGKVQIWDASRC--K--RVRTMEG-----HRLRVGALAWS----SS-LLSSG-SR--DKSILQRDIRAQEDF---VSKL 287 (415)
Q Consensus 228 ~dg~V~iwd~~~~--~--~~~~l~~-----h~~~V~~l~~~----~~-~l~sg-s~--dg~I~iwd~~~~~~~---~~~~ 287 (415)
.+|.|.++|..+. + .+. +.+ .......|.+. +. +|+++ .. +.+|.+|++...... +..+
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 6889999998732 2 222 222 22356666653 22 34444 33 456777777654322 2233
Q ss_pred ccc-cCCeEEEEEeCCCCEEEEEe-----------------CCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEE
Q 014934 288 SGH-KSEVCGLKWSYDNRELASGG-----------------NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 349 (415)
Q Consensus 288 ~~h-~~~V~~l~~spdg~~lasg~-----------------~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 349 (415)
.+. -...+.+.+.++|.+.++.. ..|.|+-+|.. + +..+...-...+.++|+|+++.++
T Consensus 160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~~~~~l~~pNGia~spDg~~lY 236 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRVVAEGFDFANGINISPDGKYVY 236 (355)
T ss_dssp CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEEEEEEESSEEEEEECTTSSEEE
T ss_pred ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-EEEeecCCcccCcceECCCCCEEE
Confidence 322 23578999999998887754 12456666653 2 223333345678999999999888
Q ss_pred EEEcCCCCCeEEEEECCC-CcE--EEEeeCCCCEEEEEECC-CCCeEEEEE
Q 014934 350 ASGGGTADRCIRFWNTTT-NTH--LSCMDTGSQVCNLVWSK-NVNELVSTH 396 (415)
Q Consensus 350 asggg~~d~~I~iwd~~t-~~~--~~~~~~~~~V~~l~~s~-~~~~l~s~~ 396 (415)
++-. ..+.|..|++.. +.. ...+......-++++.+ +|+..++++
T Consensus 237 vadt--~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 237 IAEL--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp EEEG--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred EEeC--CCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence 8876 678999999863 432 22334456678899999 599888653
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.019 Score=53.20 Aligned_cols=182 Identities=11% Similarity=0.065 Sum_probs=96.4
Q ss_pred EEEEcCCeEEEEECCCCCeEEeEecCC-CCCeEEEEEcCCCCeEEEEEC----C-------CcEEEEECCCCeeeE--Ee
Q 014934 181 LAVGLGNCVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRNTHLAVGTS----H-------GKVQIWDASRCKRVR--TM 246 (415)
Q Consensus 181 la~~~d~~V~iwd~~~~~~~~~~~~~~-~~~V~~v~~sp~g~~la~g~~----d-------g~V~iwd~~~~~~~~--~l 246 (415)
+..| ++.+.+||..+++... ..... ...........++..++.|+. + ..+.+||..+.+-.. .+
T Consensus 8 ~~~G-G~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMIS-EEGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEE-TTEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEc-CCceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 3344 4789999999988754 33321 123333334457888888873 1 127788988765321 22
Q ss_pred cCCCccEEEEEeeCCEEEEEeCC--------CcEEEEECCCCCccEEEecc---ccCCeEEEEEeCCCCEEEEEeC-C--
Q 014934 247 EGHRLRVGALAWSSSLLSSGSRD--------KSILQRDIRAQEDFVSKLSG---HKSEVCGLKWSYDNRELASGGN-D-- 312 (415)
Q Consensus 247 ~~h~~~V~~l~~~~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~lasg~~-d-- 312 (415)
.........+...+.+++.|+.+ ..+.+||+.+.. ...+.. ....-. ++. -++++++.|+. +
T Consensus 86 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 86 PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGHT-VLS-HMDLVYVIGGKGSDR 161 (315)
T ss_dssp SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSCE-EEE-ETTEEEEECCBCTTS
T ss_pred CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCccccee-EEE-ECCEEEEEeCCCCCC
Confidence 21111122333446666777642 458899988764 222211 111111 222 36677777776 2
Q ss_pred ---CcEEEEECCCCceeE--EeccCCCcEEEEEEcCCCCcEEEEEcCCCC---CeEEEEECCCCcEE
Q 014934 313 ---NRLFVWNQHSTQPVL--KYCEHTAAVKAIAWSPHLHGLLASGGGTAD---RCIRFWNTTTNTHL 371 (415)
Q Consensus 313 ---g~I~iwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~llasggg~~d---~~I~iwd~~t~~~~ 371 (415)
+.+.+||..+.+-.. .+........++.+ ++ .+++.||...+ ..+.+||+.+.+-.
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCCCeEE
Confidence 468999988764322 11111111122222 33 47777752111 25889999887543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.029 Score=51.92 Aligned_cols=178 Identities=16% Similarity=0.128 Sum_probs=93.8
Q ss_pred CCeEEEEECCCCCeEEeEecCC-CCCeEEEEEcCCCCeEEEEEC----CC-------cEEEEECCCCeeeE--EecCCCc
Q 014934 186 GNCVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRNTHLAVGTS----HG-------KVQIWDASRCKRVR--TMEGHRL 251 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~-~~~V~~v~~sp~g~~la~g~~----dg-------~V~iwd~~~~~~~~--~l~~h~~ 251 (415)
+..+..||..+++.... .... ...........++..++.|+. ++ .+.+||..+.+-.. .+.....
T Consensus 23 G~~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 101 (318)
T 2woz_A 23 DTAAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARC 101 (318)
T ss_dssp SSEEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBC
T ss_pred ccceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccc
Confidence 45689999999887653 2221 122233334457788888873 12 17788887764322 2222222
Q ss_pred cEEEEEeeCCEEEEEeCC-------CcEEEEECCCCCccEEEeccccCCe--EEEEEeCCCCEEEEEeC------CCcEE
Q 014934 252 RVGALAWSSSLLSSGSRD-------KSILQRDIRAQEDFVSKLSGHKSEV--CGLKWSYDNRELASGGN------DNRLF 316 (415)
Q Consensus 252 ~V~~l~~~~~~l~sgs~d-------g~I~iwd~~~~~~~~~~~~~h~~~V--~~l~~spdg~~lasg~~------dg~I~ 316 (415)
....+...+.+++.|+.+ ..+.+||+.+.. ...+.....+. .+++. .++++++.|+. -+.+.
T Consensus 102 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 178 (318)
T 2woz_A 102 LFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVF 178 (318)
T ss_dssp SCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEE
T ss_pred ccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEE
Confidence 223344456777777764 247888987664 22221111111 11222 36777777764 24599
Q ss_pred EEECCCCceeEE--eccCCCcEEEEEEcCCCCcEEEEEcCCCC---CeEEEEECCCCcE
Q 014934 317 VWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTAD---RCIRFWNTTTNTH 370 (415)
Q Consensus 317 iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~llasggg~~d---~~I~iwd~~t~~~ 370 (415)
+||+.+.+-... +........++.+ + ..+++.||...+ ..+.+||+.+.+-
T Consensus 179 ~yd~~~~~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 179 IYNPKKGDWKDLAPMKTPRSMFGVAIH--K-GKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEE--T-TEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred EEcCCCCEEEECCCCCCCcccceEEEE--C-CEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 999987643222 1111111122222 3 357777752222 3577899988754
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.016 Score=54.16 Aligned_cols=157 Identities=10% Similarity=0.168 Sum_probs=103.0
Q ss_pred CCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCeeeEE-ecC----C--CccEEEEEe---eC-C-EEEEEe-------
Q 014934 208 DDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVRT-MEG----H--RLRVGALAW---SS-S-LLSSGS------- 267 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~~~~-l~~----h--~~~V~~l~~---~~-~-~l~sgs------- 267 (415)
.-..-+++|.+....|.+++ ..|+|..||...+..... +.+ . ...+..|.| .+ . ++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 34556789988666666666 789999999976543333 222 1 124688999 43 3 444333
Q ss_pred ------CCCcEEEEECC---CCCccEE-Eecccc-----------CCeEEEEEeCCCCEEEEEeCC-CcEEEEECCCCce
Q 014934 268 ------RDKSILQRDIR---AQEDFVS-KLSGHK-----------SEVCGLKWSYDNRELASGGND-NRLFVWNQHSTQP 325 (415)
Q Consensus 268 ------~dg~I~iwd~~---~~~~~~~-~~~~h~-----------~~V~~l~~spdg~~lasg~~d-g~I~iwd~~~~~~ 325 (415)
.+..|..+|+. +++.... .+.... .....++..++|+..++++.- +.|..++.... .
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E
Confidence 26779999998 5553222 222111 247899999999999999888 88888887544 2
Q ss_pred eEEec------cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC
Q 014934 326 VLKYC------EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (415)
Q Consensus 326 ~~~~~------~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~ 368 (415)
+..+. ......+.|+++|++..|++.. ..+.|..+|+.+.
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~---~~g~L~~fD~~~p 216 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG---GPRALTAFDVSKP 216 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEES---SSSSEEEEECSSS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEc---CCCeEEEEcCCCC
Confidence 22221 1122367899999998555554 3899999998853
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.27 E-value=0.083 Score=58.10 Aligned_cols=220 Identities=7% Similarity=0.038 Sum_probs=124.6
Q ss_pred EEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC------------------------------
Q 014934 180 VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH------------------------------ 229 (415)
Q Consensus 180 ~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d------------------------------ 229 (415)
-+++..++.++|..+..-+......+.-...+..++++|+.+.++++..+
T Consensus 708 g~v~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1158)
T 3ei3_A 708 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK 787 (1158)
T ss_dssp EEEEECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred cEEEEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence 34445566688887654332222222334678888888877765554321
Q ss_pred -------------------CcEEEEECCCCeeeEEec-CCCccEEEEEe---e---CCEEEEEe----------CCCcEE
Q 014934 230 -------------------GKVQIWDASRCKRVRTME-GHRLRVGALAW---S---SSLLSSGS----------RDKSIL 273 (415)
Q Consensus 230 -------------------g~V~iwd~~~~~~~~~l~-~h~~~V~~l~~---~---~~~l~sgs----------~dg~I~ 273 (415)
+.|++.|..+.+.+..+. .....+.+++. . ..+|++|. ..|.|+
T Consensus 788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~ 867 (1158)
T 3ei3_A 788 LFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIV 867 (1158)
T ss_dssp CC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEE
T ss_pred cccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEE
Confidence 236777777777665543 23345555553 2 26788886 347899
Q ss_pred EEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeE-EeccCCC-cEEEEEEcCCCCcEEEE
Q 014934 274 QRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL-KYCEHTA-AVKAIAWSPHLHGLLAS 351 (415)
Q Consensus 274 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~-~~~~h~~-~V~~l~~sp~~~~llas 351 (415)
++++...+-........++.|.+|+-- +|+ |++|- .++|+||++...+.+. ....+.. .+..+.. .+. +++.
T Consensus 868 vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~--~~~-~I~v 941 (1158)
T 3ei3_A 868 VFQYSDGKLQTVAEKEVKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKT--KGD-FILV 941 (1158)
T ss_dssp EEEEETTEEEEEEEEEESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEE--ETT-EEEE
T ss_pred EEEEECCEEEEEEEEEcCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEec--cCC-EEEE
Confidence 999874331111122346778887744 454 44443 3689999998765444 1111111 1223433 344 4555
Q ss_pred EcCCCCCeEEE--EECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 352 GGGTADRCIRF--WNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 352 ggg~~d~~I~i--wd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
|. .-..|.+ |+...++....-+ ....++++.+-.++ .++. +..+|.|.+..++.
T Consensus 942 gD--~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~--aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 942 GD--LMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLG--AENAFNLFVCQKDS 999 (1158)
T ss_dssp EE--SSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEE--EETTSEEEEEEECT
T ss_pred EE--hhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEE--EcCCCcEEEEecCC
Confidence 53 4455555 4544444333222 34568888887555 4555 57899999998875
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.034 Score=50.91 Aligned_cols=185 Identities=12% Similarity=0.148 Sum_probs=100.3
Q ss_pred CcEEEEEc-C-----CeEEEEECCCCC---eEEeEecCCC-CCeEEEEEcCCCCeEEEEECC-----CcEEEEECCCCe-
Q 014934 178 HNVLAVGL-G-----NCVYLWNACSSK---VTKLCDLGID-DSVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCK- 241 (415)
Q Consensus 178 ~~~la~~~-d-----~~V~iwd~~~~~---~~~~~~~~~~-~~V~~v~~sp~g~~la~g~~d-----g~V~iwd~~~~~- 241 (415)
+.++++|. + +.+++||..+.+ ...+..+... ....++.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 45555553 2 469999999888 6665443221 12222222 67777777654 358899987764
Q ss_pred -eeEEecCCCccEEEEEeeCCEEEEEeCC-----CcEEEEECCCCCccEEEeccccCC--eEEEEEeCCCCEEEEEeCC-
Q 014934 242 -RVRTMEGHRLRVGALAWSSSLLSSGSRD-----KSILQRDIRAQEDFVSKLSGHKSE--VCGLKWSYDNRELASGGND- 312 (415)
Q Consensus 242 -~~~~l~~h~~~V~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~h~~~--V~~l~~spdg~~lasg~~d- 312 (415)
.+..+........++...+.+++.|+.+ ..+.+||+.+.. ...+.....+ -.++.. -++++++.|+.+
T Consensus 141 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~ 217 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGH--WTNVTPMATKRSGAGVAL-LNDHIYVVGGFDG 217 (301)
T ss_dssp EEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEE-ETTEEEEECCBCS
T ss_pred EECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCc--EEeCCCCCcccccceEEE-ECCEEEEEeCCCC
Confidence 3333332222233444456777777755 458899988765 2222211111 112222 267777887764
Q ss_pred ----CcEEEEECCCCceeEE--eccCCCcEEEEEEcCCCCcEEEEEcCCCC---CeEEEEECCCCcE
Q 014934 313 ----NRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTAD---RCIRFWNTTTNTH 370 (415)
Q Consensus 313 ----g~I~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~llasggg~~d---~~I~iwd~~t~~~ 370 (415)
+.+.+||+.+.+-... +........++.+ ++ .+++.||.... ..|.+||+.+.+-
T Consensus 218 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 218 TAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RG-RLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred CcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CC-EEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 4699999987653322 1111111222222 33 47777751111 4678889887653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.015 Score=53.72 Aligned_cols=213 Identities=15% Similarity=0.095 Sum_probs=110.2
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC----C-----CcEEEEECCCCee--eEEecCCCccEEE
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS----H-----GKVQIWDASRCKR--VRTMEGHRLRVGA 255 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~----d-----g~V~iwd~~~~~~--~~~l~~h~~~V~~ 255 (415)
..+.+||..+.+...+-.+.....-.+++. -++.+++.|+. + ..+.+||+.+.+- +..+.........
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 117 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 117 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence 469999999888766543322111112222 26677777765 2 4688999877642 2222222223334
Q ss_pred EEeeCCEEEEEeCC-----CcEEEEECCCCCccEEEecc---ccCCeEEEEEeCCCCEEEEEeCC-----CcEEEEECCC
Q 014934 256 LAWSSSLLSSGSRD-----KSILQRDIRAQEDFVSKLSG---HKSEVCGLKWSYDNRELASGGND-----NRLFVWNQHS 322 (415)
Q Consensus 256 l~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~lasg~~d-----g~I~iwd~~~ 322 (415)
+.+++.+++.|+.+ ..+.+||+.+.. ...+.. ....-..+.+ ++.+++.|+.+ +.+.+||+.+
T Consensus 118 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 193 (308)
T 1zgk_A 118 GVIDGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPER 193 (308)
T ss_dssp EEETTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEECCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence 44556677777644 358889987764 122211 1111122222 67777777754 4689999877
Q ss_pred CceeEE--eccCCCcEEEEEEcCCCCcEEEEEcCCC---CCeEEEEECCCCcEEEEee--CC-CCEEEEEECCCCCeEEE
Q 014934 323 TQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTA---DRCIRFWNTTTNTHLSCMD--TG-SQVCNLVWSKNVNELVS 394 (415)
Q Consensus 323 ~~~~~~--~~~h~~~V~~l~~sp~~~~llasggg~~---d~~I~iwd~~t~~~~~~~~--~~-~~V~~l~~s~~~~~l~s 394 (415)
.+-... +........++.+ +..+++.||... -..+.+||+.+.+-...-. .. .....+.+ +++.++.
T Consensus 194 ~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~ 268 (308)
T 1zgk_A 194 NEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVL 268 (308)
T ss_dssp TEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE
T ss_pred CeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEE
Confidence 643211 1111111222333 334777775211 2568999998875432211 11 11112222 4555554
Q ss_pred EEecC-----CCcEEEEECCCC
Q 014934 395 THGYS-----QNQIIVWRYPTM 411 (415)
Q Consensus 395 ~~g~~-----dg~I~vw~~~s~ 411 (415)
|+. -+.+.+||..+.
T Consensus 269 --GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 269 --GGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp --CCBCSSCBCCEEEEEETTTT
T ss_pred --cCcCCCcccceEEEEcCCCC
Confidence 443 246788887654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.041 Score=53.05 Aligned_cols=140 Identities=11% Similarity=0.126 Sum_probs=98.8
Q ss_pred CCcEEEEEcCCeEEEEECCCCCeEEeEecCC---CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe------------
Q 014934 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGI---DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK------------ 241 (415)
Q Consensus 177 ~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~---~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~------------ 241 (415)
.+.-|.+..++.|+.-++..+...+.+...+ -+.|..+..+|+|++||+.+.. .|.|..+..+.
T Consensus 31 n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCccccccccc
Confidence 3556777778899988887555556665542 2368889999999999997655 78888876221
Q ss_pred eeEEecC------CCccEEEEEeeC-----CEEEEEeCCCcEEEEECCCCC-ccEEEec---------cccCCeEEEEEe
Q 014934 242 RVRTMEG------HRLRVGALAWSS-----SLLSSGSRDKSILQRDIRAQE-DFVSKLS---------GHKSEVCGLKWS 300 (415)
Q Consensus 242 ~~~~l~~------h~~~V~~l~~~~-----~~l~sgs~dg~I~iwd~~~~~-~~~~~~~---------~h~~~V~~l~~s 300 (415)
..+.+.- ...+|..+.|+| ..|++-..|+.|++||+.... .+. .+. .....|.+++|.
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEEC
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEc
Confidence 1122321 357799999994 689999999999999998632 122 222 223679999999
Q ss_pred CCCCEEEEEe--CCCcEEEE
Q 014934 301 YDNRELASGG--NDNRLFVW 318 (415)
Q Consensus 301 pdg~~lasg~--~dg~I~iw 318 (415)
.++-.|.... ..|.|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9887777755 77877654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.38 Score=50.20 Aligned_cols=224 Identities=11% Similarity=0.124 Sum_probs=135.6
Q ss_pred ceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEec--CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDL--GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~--~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.|+++.-.....|=+|..+.+..||-.. ....... .....|.++....+| .|.+|+.+| +..||..+.+.....
T Consensus 23 ~V~~I~qD~~G~lWigT~~GL~ryDG~~--~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~ 98 (758)
T 3ott_A 23 VVSCFLQDSEGLIWIGSNKGLFSYDGYS--TQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPE 98 (758)
T ss_dssp CEEEEEECTTSCEEEEESSCEEEECSSC--EEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCS
T ss_pred eEEEEEECCCCCEEEEECCCccccCCCc--eEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcc
Confidence 5788887775555566566688887432 1111110 123568888777665 577788776 789998876543211
Q ss_pred cCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEec-----cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 247 EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS-----GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 247 ~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
......|.++......|..|+.+ -|..+|..+.. ...+. .....|.++....+|.+.+ |+.+ -|..+|..
T Consensus 99 ~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 173 (758)
T 3ott_A 99 TDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRK--LTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPS 173 (758)
T ss_dssp CCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCC--EEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETT
T ss_pred cCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCe--EEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccC
Confidence 11233577776666778888776 58889987654 23331 1134688888887887665 4444 48888987
Q ss_pred CCceeEEecc------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEE
Q 014934 322 STQPVLKYCE------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 322 ~~~~~~~~~~------h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s 394 (415)
+++.. .+.. ....|.++....++..|.+.. ++-|..+|..+++...... ....|.++....+|...+.
T Consensus 174 ~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt----~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig 248 (758)
T 3ott_A 174 NGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT----EGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG 248 (758)
T ss_dssp TTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEE----EEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE
T ss_pred CCceE-EecCCCccccccceeEEEEEECCCCEEEEEE----CCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE
Confidence 66532 2211 122488888877665444422 3458889988765432111 2345888888888887765
Q ss_pred EEecCCCcEEEEECCC
Q 014934 395 THGYSQNQIIVWRYPT 410 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s 410 (415)
+ . +-|.+++..+
T Consensus 249 T---~-~Gl~~~~~~~ 260 (758)
T 3ott_A 249 T---D-NGLYVYHNDT 260 (758)
T ss_dssp E---T-TEEEEECCTT
T ss_pred e---C-CceeEEecCC
Confidence 3 2 3466776543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.031 Score=51.23 Aligned_cols=185 Identities=18% Similarity=0.211 Sum_probs=99.1
Q ss_pred CCcEEEEEc-C-----CeEEEEECCCCCeEEeEecCCC-CCeEEEEEcCCCCeEEEEECCC-----cEEEEECCCCeeeE
Q 014934 177 SHNVLAVGL-G-----NCVYLWNACSSKVTKLCDLGID-DSVCSVGWANRNTHLAVGTSHG-----KVQIWDASRCKRVR 244 (415)
Q Consensus 177 ~~~~la~~~-d-----~~V~iwd~~~~~~~~~~~~~~~-~~V~~v~~sp~g~~la~g~~dg-----~V~iwd~~~~~~~~ 244 (415)
.+.++++|. + ..+.+||..+.+...+-..... ....++.+ ++..++.|+.++ .+.+||+.+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 345555553 2 3699999998877666543222 12222222 677788887654 47889987764322
Q ss_pred --EecCCCccEEEEEeeCCEEEEEeCC-------CcEEEEECCCCCccEEEecc---ccCCeEEEEEeCCCCEEEEEeCC
Q 014934 245 --TMEGHRLRVGALAWSSSLLSSGSRD-------KSILQRDIRAQEDFVSKLSG---HKSEVCGLKWSYDNRELASGGND 312 (415)
Q Consensus 245 --~l~~h~~~V~~l~~~~~~l~sgs~d-------g~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~lasg~~d 312 (415)
.+........++.+.+.+++.|+.+ ..+.+||+.+.. ...+.. ..... ++.. -++++++.|+.+
T Consensus 139 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~ 214 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHD 214 (302)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSC-EEEE-ETTEEEEECCBS
T ss_pred cCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccc-cEEE-ECCEEEEECCCC
Confidence 2222222233344456677776643 358899998764 222211 11111 2222 267778888764
Q ss_pred -----CcEEEEECCCCceeEE--eccCCCcEEEEEEcCCCCcEEEEEcCCC---CCeEEEEECCCCcE
Q 014934 313 -----NRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTA---DRCIRFWNTTTNTH 370 (415)
Q Consensus 313 -----g~I~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~llasggg~~---d~~I~iwd~~t~~~ 370 (415)
+.+.+||+.+.+-... +.........+.+ ++ .+++.||... -..+.+||+.+.+-
T Consensus 215 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NG-LLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CC-EEEEECCcCCCcccccEEEEcCCCCeE
Confidence 4699999987643321 1111111122222 33 4777775211 13488999887653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.094 Score=49.55 Aligned_cols=140 Identities=9% Similarity=0.162 Sum_probs=82.9
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe--eeEEec---CCCccEEEEEeeCC-----EEEEEeCC------CcE
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--RVRTME---GHRLRVGALAWSSS-----LLSSGSRD------KSI 272 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~--~~~~l~---~h~~~V~~l~~~~~-----~l~sgs~d------g~I 272 (415)
.....++|.|+|++ .++...|.|.+++ +++ .+..+. ........|+++++ .|+.+... +.|
T Consensus 31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 46789999999985 4556779999998 343 222222 22456889999864 66555432 568
Q ss_pred EEEECCCCC-----ccEEEec---cccCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEECCC---------
Q 014934 273 LQRDIRAQE-----DFVSKLS---GHKSEVCGLKWSYDNRELASGGN-------------DNRLFVWNQHS--------- 322 (415)
Q Consensus 273 ~iwd~~~~~-----~~~~~~~---~h~~~V~~l~~spdg~~lasg~~-------------dg~I~iwd~~~--------- 322 (415)
..++..... ..+..+. +.......|+|.|||.++++-+. .+.|.-+|...
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 888876431 1111122 11123468999999987776432 25666666543
Q ss_pred -----CceeEEeccCCCcEEEEEEcCCCCcEEEEEc
Q 014934 323 -----TQPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 323 -----~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 353 (415)
...+... +|. ....++|+|+...|+++-.
T Consensus 188 ~~~~~~~~i~a~-G~r-np~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 188 GRRGARPEVYSL-GHR-NPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp TCTTSCTTEEEE-CCS-EECCCEECTTTCCEEEEEE
T ss_pred CCCCCCccEEEE-cCC-CcccEEEECCCCCEEEEEc
Confidence 1112221 332 3577899994444776654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.05 Score=49.95 Aligned_cols=185 Identities=15% Similarity=0.088 Sum_probs=100.9
Q ss_pred CcEEEEEc-C----CeEEEEECCCCCeEEeEecCCC-CCeEEEEEcCCCCeEEEEECC------CcEEEEECCCCeeeE-
Q 014934 178 HNVLAVGL-G----NCVYLWNACSSKVTKLCDLGID-DSVCSVGWANRNTHLAVGTSH------GKVQIWDASRCKRVR- 244 (415)
Q Consensus 178 ~~~la~~~-d----~~V~iwd~~~~~~~~~~~~~~~-~~V~~v~~sp~g~~la~g~~d------g~V~iwd~~~~~~~~- 244 (415)
+.++++|. + +.+.+||..+++...+..+... .....+.+ +++.++.|+.+ ..+.+||..+.+-..
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 45555553 2 5799999999887666544322 12222222 67777887765 458999998765322
Q ss_pred -EecCCCccEEEEEeeCCEEEEEeC---------CCcEEEEECCCCCccEEEeccccCC--eEEEEEeCCCCEEEEEeCC
Q 014934 245 -TMEGHRLRVGALAWSSSLLSSGSR---------DKSILQRDIRAQEDFVSKLSGHKSE--VCGLKWSYDNRELASGGND 312 (415)
Q Consensus 245 -~l~~h~~~V~~l~~~~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~~h~~~--V~~l~~spdg~~lasg~~d 312 (415)
.+........++...+.+++.|+. -..+.+||+.+.. ...+...... -.++... ++++++.|+.+
T Consensus 134 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~ 210 (306)
T 3ii7_A 134 PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFV-KDKIFAVGGQN 210 (306)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE-TTEEEEECCEE
T ss_pred CCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcceEEEE-CCEEEEEeCCC
Confidence 222222222334445666666653 3458899998764 2222211111 1122222 67777777654
Q ss_pred -----CcEEEEECCCCceeE--EeccCCCcEEEEEEcCCCCcEEEEEcCC---CCCeEEEEECCCCcE
Q 014934 313 -----NRLFVWNQHSTQPVL--KYCEHTAAVKAIAWSPHLHGLLASGGGT---ADRCIRFWNTTTNTH 370 (415)
Q Consensus 313 -----g~I~iwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~llasggg~---~d~~I~iwd~~t~~~ 370 (415)
+.+.+||+.+.+-.. .+........++.+ + ..+++.||.. .-..+.+||+.+.+-
T Consensus 211 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--G-SIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp TTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--T-TEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred CCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--C-CEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 468999998764321 11111122233333 3 3477777521 125688899987653
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.24 Score=46.80 Aligned_cols=193 Identities=9% Similarity=0.106 Sum_probs=108.8
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe-eeEEec---CCCccEEEEEeeCC-----EEEEEeC----C----Cc
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-RVRTME---GHRLRVGALAWSSS-----LLSSGSR----D----KS 271 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~-~~~~l~---~h~~~V~~l~~~~~-----~l~sgs~----d----g~ 271 (415)
.....++|.|+|+ |.++..+|.|.++|. +++ .+..+. ........|+++++ .|+.+.. + +.
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4678999999998 555577799999973 444 222221 22356889999863 5655443 3 56
Q ss_pred EEEEECCCCC------ccE-EEec-cccCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEECCCC-------
Q 014934 272 ILQRDIRAQE------DFV-SKLS-GHKSEVCGLKWSYDNRELASGGN-------------DNRLFVWNQHST------- 323 (415)
Q Consensus 272 I~iwd~~~~~------~~~-~~~~-~h~~~V~~l~~spdg~~lasg~~-------------dg~I~iwd~~~~------- 323 (415)
|..++..... +.+ ..+. ........|+|.|||.++++-+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 7778766441 111 1121 11123467999999987777432 245666665432
Q ss_pred --ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCC--eEEEEECCCCc------------------EEEEe-eCCCCE
Q 014934 324 --QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR--CIRFWNTTTNT------------------HLSCM-DTGSQV 380 (415)
Q Consensus 324 --~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~--~I~iwd~~t~~------------------~~~~~-~~~~~V 380 (415)
..+... +|. ....++|+|+...|+++-.| .++ .|.+. ..|. .+..+ ......
T Consensus 187 ~~~~i~a~-G~r-np~Gla~d~~~g~l~v~d~g-~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 187 PNSPIWSY-GHR-NPQGIDWHRASGVMVATEHG-PVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp TTCCEEEE-CCS-CCCEEEECTTTCCEEEEECC-SSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCcEEEE-ccC-CcceEEEeCCCCCEEEEecC-CCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 122222 443 34689999944447776543 222 23332 2221 22233 224457
Q ss_pred EEEEEC-------CCCCeEEEEEecCCCcEEEEECCC
Q 014934 381 CNLVWS-------KNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 381 ~~l~~s-------~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
..+.|. .+|..+++ ....+.|...++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~--~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIA--CLRGSMLAAVNFGD 296 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEE--ETTTTEEEEEEECG
T ss_pred cceEEECCCCCcccCCcEEEE--EcCCCEEEEEEECC
Confidence 788883 46666655 45566777777653
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.63 Score=48.55 Aligned_cols=213 Identities=13% Similarity=0.106 Sum_probs=128.8
Q ss_pred ceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec-
Q 014934 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME- 247 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~- 247 (415)
.|.++.-..+..|-++.++.++.||..+.+...... .....|.++.. .+| .|.+|+.+ -|..+|..+++.. .+.
T Consensus 64 ~i~~i~~d~~g~lWigT~~Gl~~yd~~~~~f~~~~~-~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~ 138 (758)
T 3ott_A 64 RIYCGVIIDNTYLYMGTDNGILVYNYRADRYEQPET-DFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDT 138 (758)
T ss_dssp CEEEEEEETTTEEEEEETTEEEEEETTTTEECCCSC-CCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECH
T ss_pred eEEEEEEcCCCcEEEEeCCCeEEEeCCCCEEECccc-CCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-Eecc
Confidence 466666556555666667779999998765433111 12345777754 344 57777777 5888998765533 231
Q ss_pred ----CCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEecc------ccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 248 ----GHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSG------HKSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 248 ----~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------h~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
.....|.++... ...|..|+.+| |..+|..... ...+.. ....|.++....++..|..|.. +-|.
T Consensus 139 ~~~~l~~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~ 214 (758)
T 3ott_A 139 RRNGLPNNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGK--FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLF 214 (758)
T ss_dssp HHHCCSCSCEEEEEECTTCCEEEEETTE-EEEEETTTTE--EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEE
T ss_pred CCCCcCCCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCc--eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCe
Confidence 123468888776 45666677654 7788876654 222211 1224888888877776555554 4588
Q ss_pred EEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--------CCCCEEEEEECCC
Q 014934 317 VWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--------TGSQVCNLVWSKN 388 (415)
Q Consensus 317 iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--------~~~~V~~l~~s~~ 388 (415)
.+|..+++...........|.++....+|. +.+.. ++-+.+++..+++...... ....|.++....+
T Consensus 215 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT----~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~ 289 (758)
T 3ott_A 215 QYFPSTGQIKQTEAFHNNSIKSLALDGNGD-LLAGT----DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE 289 (758)
T ss_dssp EEETTTTEEEEEEEEEEEEEEEEEECTTCC-EEEEE----TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT
T ss_pred EEcCCCCeEEeccCCCCCeEEEEEEcCCCC-EEEEe----CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC
Confidence 899877643221111234588888887776 54422 3458888887765432211 1245889988888
Q ss_pred CCeEEEE
Q 014934 389 VNELVST 395 (415)
Q Consensus 389 ~~~l~s~ 395 (415)
|...+.+
T Consensus 290 g~lWiGT 296 (758)
T 3ott_A 290 HNIWLGT 296 (758)
T ss_dssp CCEEEEE
T ss_pred CCEEEEe
Confidence 8876653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.069 Score=58.91 Aligned_cols=233 Identities=9% Similarity=0.064 Sum_probs=142.1
Q ss_pred EeecCCCcEEEEEc----CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 172 LVDWSSHNVLAVGL----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 172 ~l~ws~~~~la~~~----d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
.+.+.+++++++-. +..|.|.|+..+......... .-+.-.+|..+.||.-. ..+++|+|+++...+..+.
T Consensus 29 ~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~ 103 (1630)
T 1xi4_A 29 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT 103 (1630)
T ss_pred ceeeecCceEEEEecCCCCceEEEEECCCCCCccccccc----chhhccCCCcceEEEec-CCeEEEeehHHhhhhcccc
Confidence 33444455665542 347888888876543222211 22344578777777654 6789999999877776665
Q ss_pred CCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccc----cCCeEEEEEeCCCCEEEEEe-------CCCcE
Q 014934 248 GHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGH----KSEVCGLKWSYDNRELASGG-------NDNRL 315 (415)
Q Consensus 248 ~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h----~~~V~~l~~spdg~~lasg~-------~dg~I 315 (415)
- ...|.--.|- ++.|+-.+ +..|+.|++.....++..+..| ...|..-..+++.++++..| -.|.+
T Consensus 104 ~-~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~m 181 (1630)
T 1xi4_A 104 M-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (1630)
T ss_pred c-CCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCccccee
Confidence 3 4467777775 56666554 5679999997655455555555 45677788889999987644 34778
Q ss_pred EEEECCCCceeEEeccCCCcEEEEEEc--CCCCcEEEEEcC-CCCCeEEEEECCCC---c-EE--EEee-------CCCC
Q 014934 316 FVWNQHSTQPVLKYCEHTAAVKAIAWS--PHLHGLLASGGG-TADRCIRFWNTTTN---T-HL--SCMD-------TGSQ 379 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~s--p~~~~llasggg-~~d~~I~iwd~~t~---~-~~--~~~~-------~~~~ 379 (415)
.+|....+ ..+.+++|.+....+... +....+++-+.. ...+.++|-++... . .. ..++ ....
T Consensus 182 QLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Df 260 (1630)
T 1xi4_A 182 QLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF 260 (1630)
T ss_pred eeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCc
Confidence 88887654 334566777655444432 222234443321 02367888887442 1 11 1111 1223
Q ss_pred EEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 380 V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
...+..++....+.. -+.-|-|+++|+.++..+
T Consensus 261 pv~~~vs~k~g~iy~--itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 261 PVAMQISEKHDVVFL--ITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred ceEEEeccccCEEEE--EecCceEEEEecccchhh
Confidence 445677776666555 347889999999998764
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.04 Score=50.95 Aligned_cols=172 Identities=14% Similarity=0.082 Sum_probs=92.0
Q ss_pred EEEEECCCCCeEEeEecCCC-CCeEEEEEcCCCCeEEEEECC--------CcEEEEECCCCe--eeEEecCCCccEEEEE
Q 014934 189 VYLWNACSSKVTKLCDLGID-DSVCSVGWANRNTHLAVGTSH--------GKVQIWDASRCK--RVRTMEGHRLRVGALA 257 (415)
Q Consensus 189 V~iwd~~~~~~~~~~~~~~~-~~V~~v~~sp~g~~la~g~~d--------g~V~iwd~~~~~--~~~~l~~h~~~V~~l~ 257 (415)
++.||..+++...+...... .....+.+ ++..++.|+.+ ..+.+||..+.+ .+..+........++.
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 146 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS 146 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence 88999998877655433221 11122222 66777777632 458999998764 2222222222233444
Q ss_pred eeCCEEEEEeC-C-----CcEEEEECCCCCccEEEeccccCC--eEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCc
Q 014934 258 WSSSLLSSGSR-D-----KSILQRDIRAQEDFVSKLSGHKSE--VCGLKWSYDNRELASGGNDN-----RLFVWNQHSTQ 324 (415)
Q Consensus 258 ~~~~~l~sgs~-d-----g~I~iwd~~~~~~~~~~~~~h~~~--V~~l~~spdg~~lasg~~dg-----~I~iwd~~~~~ 324 (415)
..+.+++.|+. + ..+.+||+.+.. ...+.....+ -.+++. -++++++.|+.++ .+.+||+.+.+
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE--WKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCe--EEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 55677777776 2 468999988764 2222211111 111222 2677888887654 58899998764
Q ss_pred eeEEec--cCCCcEEEEEEcCCCCcEEEEEcCCCC--------------CeEEEEECCCCcE
Q 014934 325 PVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTAD--------------RCIRFWNTTTNTH 370 (415)
Q Consensus 325 ~~~~~~--~h~~~V~~l~~sp~~~~llasggg~~d--------------~~I~iwd~~t~~~ 370 (415)
-...-. ........+.+ ++ .+++.|| .+ ..|.+||+.+.+-
T Consensus 224 W~~~~~~p~~r~~~~~~~~--~~-~l~v~GG--~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 224 WAPFEAFPQERSSLSLVSL--VG-TLYAIGG--FATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp EEEECCCSSCCBSCEEEEE--TT-EEEEEEE--EEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred EEECCCCCCcccceeEEEE--CC-EEEEECC--ccccCcCCccccccccCcEEEecCCCChh
Confidence 332211 11111222222 33 4777775 32 3467888877654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.04 Score=50.78 Aligned_cols=175 Identities=17% Similarity=0.165 Sum_probs=94.4
Q ss_pred CeEEEEECCCCCeEEeEecCC-CCCeEEEEEcCCCCeEEEEECC-----CcEEEEECCCCeee--EEecCCCccEEEEEe
Q 014934 187 NCVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCKRV--RTMEGHRLRVGALAW 258 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~-~~~V~~v~~sp~g~~la~g~~d-----g~V~iwd~~~~~~~--~~l~~h~~~V~~l~~ 258 (415)
+.+++||..+.+...+..+.. .....++.+ +++.++.|+.+ ..+.+||..+.+-. ..+........++.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 468999999887666544322 122222322 67777777643 36889998876422 222222222333444
Q ss_pred eCCEEEEEeCC-----CcEEEEECCCCCccEEEecc---ccCCeEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCce
Q 014934 259 SSSLLSSGSRD-----KSILQRDIRAQEDFVSKLSG---HKSEVCGLKWSYDNRELASGGND-----NRLFVWNQHSTQP 325 (415)
Q Consensus 259 ~~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~lasg~~d-----g~I~iwd~~~~~~ 325 (415)
.+.+++.|+.+ ..+.+||+.+.. ...+.. ....-..+.+ ++++++.|+.+ +.+.+||+.+.+-
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 56677777654 458899987664 222211 1111122222 67777888764 5699999987643
Q ss_pred eEE--eccCCCcEEEEEEcCCCCcEEEEEcCC---CCCeEEEEECCCCcE
Q 014934 326 VLK--YCEHTAAVKAIAWSPHLHGLLASGGGT---ADRCIRFWNTTTNTH 370 (415)
Q Consensus 326 ~~~--~~~h~~~V~~l~~sp~~~~llasggg~---~d~~I~iwd~~t~~~ 370 (415)
... +.........+.+ + ..+++.||.. .-..+.+||+.+.+-
T Consensus 244 ~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 244 TFVAPMKHRRSALGITVH--Q-GRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp EECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred EECCCCCCCccceEEEEE--C-CEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 221 1111111122222 3 3477777511 124578888887653
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.68 E-value=1.1 Score=49.38 Aligned_cols=219 Identities=7% Similarity=0.048 Sum_probs=123.9
Q ss_pred ceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCC------CCeEEEEEC-CCcEEEEECCCCe
Q 014934 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR------NTHLAVGTS-HGKVQIWDASRCK 241 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~------g~~la~g~~-dg~V~iwd~~~~~ 241 (415)
.|...+-+.. .++++.++.+.++.+..+++.......-...|.|+++.+. ++++|+|.. |++|+|+++.+.+
T Consensus 515 ~I~~As~n~~-~vvva~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~ 593 (1158)
T 3ei3_A 515 NISVASCNSS-QVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE 593 (1158)
T ss_dssp CCCEEEECSS-EEEEEETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEEeCCC-EEEEEECCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence 3444444433 3444457788888777665544333334568999999863 469999996 9999999998766
Q ss_pred eeEEecC-CCccEEEEEee----CCEEEEEeCCCcEEEEECCC--CCcc--EEEeccccCCeEEEEEeCCCCEEEEEeCC
Q 014934 242 RVRTMEG-HRLRVGALAWS----SSLLSSGSRDKSILQRDIRA--QEDF--VSKLSGHKSEVCGLKWSYDNRELASGGND 312 (415)
Q Consensus 242 ~~~~l~~-h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~--~~~~--~~~~~~h~~~V~~l~~spdg~~lasg~~d 312 (415)
.+....- ......++... .-+|..|-.||.+..+.+.. +.-. .....| ..++.=..+...|..-+.+..+
T Consensus 594 ~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~ 672 (1158)
T 3ei3_A 594 LLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSD 672 (1158)
T ss_dssp EEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESS
T ss_pred eEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECC
Confidence 5543321 11234444443 24788999999987666543 2211 112233 3455544454444443333345
Q ss_pred CcEEEEECCCCceeEEeccCCCcEEEEEEcCCC--CcEEEEEcCCCCCeEEEEECCCCc--EEEEeeCCCCEEEEEECCC
Q 014934 313 NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL--HGLLASGGGTADRCIRFWNTTTNT--HLSCMDTGSQVCNLVWSKN 388 (415)
Q Consensus 313 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~--~~llasggg~~d~~I~iwd~~t~~--~~~~~~~~~~V~~l~~s~~ 388 (415)
....+|--+ ++....--.-..--....|+..+ ..++++. ++.++|..+..-. .+..+.-+..+..++++|.
T Consensus 673 rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~----~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~ 747 (1158)
T 3ei3_A 673 RPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN----NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEV 747 (1158)
T ss_dssp SCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC----SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGG
T ss_pred CCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEEc----CCceEEEEecccCCeeEEEEeCCCCceEEEEcCC
Confidence 555555433 33222111111112344564322 2344433 4568888775432 3455667788899999998
Q ss_pred CCeEEE
Q 014934 389 VNELVS 394 (415)
Q Consensus 389 ~~~l~s 394 (415)
.+.++.
T Consensus 748 ~~~~~v 753 (1158)
T 3ei3_A 748 SQCFGV 753 (1158)
T ss_dssp GTEEEE
T ss_pred CCEEEE
Confidence 876655
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.1 Score=48.94 Aligned_cols=140 Identities=12% Similarity=0.066 Sum_probs=76.6
Q ss_pred CCcEEEEEc--CCeEEEEECCC--CCeEEeEecC-C-CCCeEEEEEcCCCCeEEEEEC-C---------CcEEEEECCCC
Q 014934 177 SHNVLAVGL--GNCVYLWNACS--SKVTKLCDLG-I-DDSVCSVGWANRNTHLAVGTS-H---------GKVQIWDASRC 240 (415)
Q Consensus 177 ~~~~la~~~--d~~V~iwd~~~--~~~~~~~~~~-~-~~~V~~v~~sp~g~~la~g~~-d---------g~V~iwd~~~~ 240 (415)
.+.++++|. .+.+++||..+ .+...+..+. . ...-.++.+ ++++++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 345555552 46899999974 5555554333 1 112222222 5777777765 2 46899999876
Q ss_pred ee--eEEec-CCCccEEEEEeeCCEEEEEeCC---------------------------------------CcEEEEECC
Q 014934 241 KR--VRTME-GHRLRVGALAWSSSLLSSGSRD---------------------------------------KSILQRDIR 278 (415)
Q Consensus 241 ~~--~~~l~-~h~~~V~~l~~~~~~l~sgs~d---------------------------------------g~I~iwd~~ 278 (415)
+- +..+. .......++...+.+++.|+.+ ..+.+||+.
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 42 22222 2222334445567788888765 578999998
Q ss_pred CCCcc-EEEeccccCCe-EEEEEeCCCCEEEEEeC------CCcEEEEEC
Q 014934 279 AQEDF-VSKLSGHKSEV-CGLKWSYDNRELASGGN------DNRLFVWNQ 320 (415)
Q Consensus 279 ~~~~~-~~~~~~h~~~V-~~l~~spdg~~lasg~~------dg~I~iwd~ 320 (415)
+..-. +..+. ....- .+++.. ++++++.|+. ...+.+||+
T Consensus 177 ~~~W~~~~~~p-~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 177 TQQWSYAGESP-WYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp TTEEEEEEECS-SCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred CCcEEECCCCC-CCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence 76511 11111 11111 223332 5667777764 345788887
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.058 Score=50.74 Aligned_cols=199 Identities=8% Similarity=-0.038 Sum_probs=106.3
Q ss_pred cCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEc--C-CCCeEEEE-ECCCcEEEEECCCCeeeEEecC-
Q 014934 175 WSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWA--N-RNTHLAVG-TSHGKVQIWDASRCKRVRTMEG- 248 (415)
Q Consensus 175 ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~s--p-~g~~la~g-~~dg~V~iwd~~~~~~~~~l~~- 248 (415)
|.- +.+++.+.||.|+-+|..+|+..-.+......++....-. + ++..+++. +.||.|..++..++.....+..
T Consensus 7 ~~~~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 7 LSLSDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp SEEEEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred ceeCCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 444 3455555799999999999998777654311222221100 1 23333333 5899999999988754433321
Q ss_pred ---CCccEEE---EEe-------eCCEEEEEeCCCcEEEEECCCCCccEEEecccc-CC------eEEEEEe-----CCC
Q 014934 249 ---HRLRVGA---LAW-------SSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK-SE------VCGLKWS-----YDN 303 (415)
Q Consensus 249 ---h~~~V~~---l~~-------~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~------V~~l~~s-----pdg 303 (415)
...++.. ... .+..+++|+.+|.+...|.++++. +..+.... .. ..|.... ..+
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~-~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI-ISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE-EEEESTTCBCC--------------------C
T ss_pred cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE-EEEEecCCCcccccccccccccccccccccCC
Confidence 1222221 011 367889999999999999999983 44443211 00 1111111 124
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEec-----cCCCc--EE-EEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE-Ee
Q 014934 304 RELASGGNDNRLFVWNQHSTQPVLKYC-----EHTAA--VK-AIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS-CM 374 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~~~~~~~~~~-----~h~~~--V~-~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~-~~ 374 (415)
..|+.|..+..+.+.+ ++++ +..++ .+... +. .-..+.++.. +++. .|+.|.-+|..+|+.+. ..
T Consensus 166 ~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~---~dg~v~A~d~~~G~~~W~~~ 239 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPF---RDKSLLASDLDFRIARWVSP 239 (339)
T ss_dssp CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEE---TTTEEEEECSTTCCEEEECC
T ss_pred CeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEEC---CCCEEEEEECCCCcEEEEee
Confidence 5677777777777766 4443 22211 11000 00 0000123443 4433 68899999988888776 44
Q ss_pred eCCCCE
Q 014934 375 DTGSQV 380 (415)
Q Consensus 375 ~~~~~V 380 (415)
+..+++
T Consensus 240 ~l~sPv 245 (339)
T 2be1_A 240 TFPGII 245 (339)
T ss_dssp CCSSCE
T ss_pred cCCCCe
Confidence 444443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.72 Score=43.44 Aligned_cols=221 Identities=14% Similarity=0.065 Sum_probs=121.5
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEec----CCCCCeEEEEEcCC---CCeEEEEEC----C----CcE
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDL----GIDDSVCSVGWANR---NTHLAVGTS----H----GKV 232 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~----~~~~~V~~v~~sp~---g~~la~g~~----d----g~V 232 (415)
....++|.| ++++++-.++.|++++ .+++ ..+..+ ........|+++|+ +..|.++.. + +.|
T Consensus 30 ~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTERPGRLVLIS-PSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEEC-SSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCeEEEEcCCCeEEEEeCCCEEEEEe-CCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 356788988 6666666779999997 3454 223221 12356899999997 555555443 2 567
Q ss_pred EEEECCCC-------eee-EEecC-CCccEEEEEee--CCEEEEEeC-------------CCcEEEEECCCCC-------
Q 014934 233 QIWDASRC-------KRV-RTMEG-HRLRVGALAWS--SSLLSSGSR-------------DKSILQRDIRAQE------- 281 (415)
Q Consensus 233 ~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~~--~~~l~sgs~-------------dg~I~iwd~~~~~------- 281 (415)
..|+.... +.+ ..+.. .......|+|. +.++++.+. .|.|..+|....-
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~ 187 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP 187 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence 77776543 111 11221 11123567776 344444322 2456666654320
Q ss_pred ccEEEeccccCCeEEEEEeC-CCCEEEEEeCCC---cEEEEECCC----------------CceeEEeccCCCcEEEEEE
Q 014934 282 DFVSKLSGHKSEVCGLKWSY-DNRELASGGNDN---RLFVWNQHS----------------TQPVLKYCEHTAAVKAIAW 341 (415)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg---~I~iwd~~~----------------~~~~~~~~~h~~~V~~l~~ 341 (415)
.......+|. ....++|+| +|+++++-...+ .|.+...-. ..++..+.........++|
T Consensus 188 ~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~ 266 (354)
T 3a9g_A 188 NSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASF 266 (354)
T ss_dssp TCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEE
T ss_pred CCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEE
Confidence 0111223443 356899999 676665533222 244332110 1244444222346788888
Q ss_pred c-------CCCCcEEEEEcCCCCCeEEEEECCCC-cEE--EEeeC--CCCEEEEEECCCCCeEEEE
Q 014934 342 S-------PHLHGLLASGGGTADRCIRFWNTTTN-THL--SCMDT--GSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 342 s-------p~~~~llasggg~~d~~I~iwd~~t~-~~~--~~~~~--~~~V~~l~~s~~~~~l~s~ 395 (415)
. .++ .++++.- ..+.|...++... +.. ..+-. ...+..+++.|||..++++
T Consensus 267 y~g~~fp~~~G-~l~v~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 267 VHGDMFPGLRG-WLLIACL--RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp CCSSSCGGGTT-EEEEEET--TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred ECCCCCcccCC-cEEEEEc--CCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 4 344 3666553 5678888888753 332 22222 4578999999999877663
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.12 Score=47.63 Aligned_cols=175 Identities=11% Similarity=0.117 Sum_probs=90.9
Q ss_pred EEEEECCCCCeEEeEecCCC-CCeEEEEEcCCCCeEEEEECC-------CcEEEEECCCCeeeE--EecCCCccEEEEEe
Q 014934 189 VYLWNACSSKVTKLCDLGID-DSVCSVGWANRNTHLAVGTSH-------GKVQIWDASRCKRVR--TMEGHRLRVGALAW 258 (415)
Q Consensus 189 V~iwd~~~~~~~~~~~~~~~-~~V~~v~~sp~g~~la~g~~d-------g~V~iwd~~~~~~~~--~l~~h~~~V~~l~~ 258 (415)
+..||..+.+...+-..... .....+.+ +++.++.|+.+ ..+.+||..+.+-.. .+........++..
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH 157 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence 88899988877665433221 12222222 67777777754 248889988764322 22211111223334
Q ss_pred eCCEEEEEeC------CCcEEEEECCCCCccEEEeccccC--CeEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCce
Q 014934 259 SSSLLSSGSR------DKSILQRDIRAQEDFVSKLSGHKS--EVCGLKWSYDNRELASGGND-----NRLFVWNQHSTQP 325 (415)
Q Consensus 259 ~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h~~--~V~~l~~spdg~~lasg~~d-----g~I~iwd~~~~~~ 325 (415)
.+.+++.|+. -..+.+||+.+.. ...+..... .-.+++. -++++++.|+.+ +.+.+||+.+.+-
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCE--EEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 4666677764 2358999998765 222221111 1112222 267777887754 3578899887643
Q ss_pred eEE--eccCCCcEEEEEEcCCCCcEEEEEcCCC------------CCeEEEEECCCCcEE
Q 014934 326 VLK--YCEHTAAVKAIAWSPHLHGLLASGGGTA------------DRCIRFWNTTTNTHL 371 (415)
Q Consensus 326 ~~~--~~~h~~~V~~l~~sp~~~~llasggg~~------------d~~I~iwd~~t~~~~ 371 (415)
... +.........+.+ + ..+++.||... -..+.+||+.+.+-.
T Consensus 235 ~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 235 EVMTEFPQERSSISLVSL--A-GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp EECCCCSSCCBSCEEEEE--T-TEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred EECCCCCCcccceEEEEE--C-CEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 221 1111111122222 2 34777775211 245778888876543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.1 Score=54.28 Aligned_cols=191 Identities=15% Similarity=0.215 Sum_probs=107.4
Q ss_pred CCcEEEEEc-C----CeEEEEECCCCCeEEeE-e-----cCC-CCCeEEEEEcCCCCeEEEEECC------CcEEEEECC
Q 014934 177 SHNVLAVGL-G----NCVYLWNACSSKVTKLC-D-----LGI-DDSVCSVGWANRNTHLAVGTSH------GKVQIWDAS 238 (415)
Q Consensus 177 ~~~~la~~~-d----~~V~iwd~~~~~~~~~~-~-----~~~-~~~V~~v~~sp~g~~la~g~~d------g~V~iwd~~ 238 (415)
.+.+++.|. + +.+++||..+++...+. . ... ...-.++.+..+++.++.|+.+ ..+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 355555553 1 46999999998877665 2 111 1222333333277888888754 358899988
Q ss_pred CCe--eeEEecCCCccEEEEEe-eCCEEEEEeCCC--cEEEEECCCCCccEEEecc------ccCCeEEEEEeCC-CCEE
Q 014934 239 RCK--RVRTMEGHRLRVGALAW-SSSLLSSGSRDK--SILQRDIRAQEDFVSKLSG------HKSEVCGLKWSYD-NREL 306 (415)
Q Consensus 239 ~~~--~~~~l~~h~~~V~~l~~-~~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~------h~~~V~~l~~spd-g~~l 306 (415)
+.+ .+..+......-.++.+ .+.+++.|+.++ .+.+||+.+.. ...+.. ......++.+..+ +.++
T Consensus 477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 753 33223322233344444 577888887655 69999998765 222221 1122233555655 6677
Q ss_pred EEEeC--C-----CcEEEEECCCCce-----eEEecc----CCCcEEEEEEcCCCCcEEEEEcCC------CCCeEEEEE
Q 014934 307 ASGGN--D-----NRLFVWNQHSTQP-----VLKYCE----HTAAVKAIAWSPHLHGLLASGGGT------ADRCIRFWN 364 (415)
Q Consensus 307 asg~~--d-----g~I~iwd~~~~~~-----~~~~~~----h~~~V~~l~~sp~~~~llasggg~------~d~~I~iwd 364 (415)
+.||. + +.+.+||+.+.+. ...+.. ......++. ..++ .+++.||.. ....|.+||
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~-~~~~-~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY-ITPR-KLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE-EETT-EEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE-eCCC-EEEEECCccCCCCCCCCCeEEEEE
Confidence 77775 2 4589999887761 122211 111122222 2223 477777521 235699999
Q ss_pred CCCCcEE
Q 014934 365 TTTNTHL 371 (415)
Q Consensus 365 ~~t~~~~ 371 (415)
+.+.+-.
T Consensus 633 ~~t~~W~ 639 (695)
T 2zwa_A 633 PLSETLT 639 (695)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 9987654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.4 Score=45.27 Aligned_cols=138 Identities=15% Similarity=0.112 Sum_probs=82.8
Q ss_pred CCCcEEEEECCCCCccEEE--ecc-----ccCCeEEEEEeC--CCC-EEEEE-eC--CCcEEEEECCCCc----eeEEec
Q 014934 268 RDKSILQRDIRAQEDFVSK--LSG-----HKSEVCGLKWSY--DNR-ELASG-GN--DNRLFVWNQHSTQ----PVLKYC 330 (415)
Q Consensus 268 ~dg~I~iwd~~~~~~~~~~--~~~-----h~~~V~~l~~sp--dg~-~lasg-~~--dg~I~iwd~~~~~----~~~~~~ 330 (415)
.+|.|.++|..+....... +.+ ......+|.+.+ ++. +|+++ .. +..|.+|++.... .+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999998743211222 222 234677888766 454 34443 33 4577787765432 223343
Q ss_pred cC-CCcEEEEEEcCCCCcEEEEEcC---------------CCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 331 EH-TAAVKAIAWSPHLHGLLASGGG---------------TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 331 ~h-~~~V~~l~~sp~~~~llasggg---------------~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
+. -...+.+++.++|. ++++... ...+.|..+|. ++.......-...+.++|+||++.|..
T Consensus 161 g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEE
Confidence 22 24578999999987 6665431 01245655655 333222333456789999999998887
Q ss_pred EEecCCCcEEEEECC
Q 014934 395 THGYSQNQIIVWRYP 409 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~ 409 (415)
+ .+..+.|..|++.
T Consensus 238 a-dt~~~~I~~~~~~ 251 (355)
T 3sre_A 238 A-ELLAHKIHVYEKH 251 (355)
T ss_dssp E-EGGGTEEEEEEEC
T ss_pred E-eCCCCeEEEEEEC
Confidence 6 3456899999986
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.7 Score=42.54 Aligned_cols=208 Identities=11% Similarity=0.056 Sum_probs=119.2
Q ss_pred CcEEEEEc---CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC--------------CcEEEEECCCC
Q 014934 178 HNVLAVGL---GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH--------------GKVQIWDASRC 240 (415)
Q Consensus 178 ~~~la~~~---d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d--------------g~V~iwd~~~~ 240 (415)
+..|..+. ++.|+..+.......++.. +. +--++++|.+|..+... ..|+..++...
T Consensus 25 g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~----~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 25 DGEVFFSNTNDNGRLYAMNIDGSNIHKLSN----DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp TTEEEEEEGGGTTEEEEEETTSCSCEEEEE----EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred CCEEEEEeCCCCceEEEEcCCCCCCEEccC----Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 45555553 5678888887767666653 22 33457889988877553 35677777655
Q ss_pred eeeEEecCCCccEEEEEeeCCEEEEEe----CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-CCcE
Q 014934 241 KRVRTMEGHRLRVGALAWSSSLLSSGS----RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-DNRL 315 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~~~~l~sgs----~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-dg~I 315 (415)
+... +.. .....++..++.|+-.. .+..|+..++.... ...+..+.. ..++++++.|.-.+. ...|
T Consensus 99 ~~~~-l~~--~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 99 GSTV-LDP--DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp CCEE-EEC--SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCE
T ss_pred cceE-eec--CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceE
Confidence 4333 221 22334555677766554 34456666776544 334443332 456778888876554 6789
Q ss_pred EEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
++-++..+.....+.+ ... ..+.|++.+|+.+..+ ....|..-++..+.... + +...+ ..|+|++..|..+
T Consensus 170 y~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~-~~~~I~~~~ldG~~~~~-L-t~~~~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 170 YRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVN-RDNAIVHVNINNPNPVV-L-TEANI--EHYNVYGSLIFYQ 240 (302)
T ss_dssp EEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGG-GTTEEEEECSSSCCCEE-C-SCSCE--EEEEEETTEEEEE
T ss_pred EEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcC-CCcEEEEEECCCCCeEE-E-eCCCc--ceEEECCCEEEEE
Confidence 9999876654333332 222 3456888888777641 22467777776554322 2 22333 3367777777654
Q ss_pred EecCCCcEEEEECC
Q 014934 396 HGYSQNQIIVWRYP 409 (415)
Q Consensus 396 ~g~~dg~I~vw~~~ 409 (415)
.....+.|..-++.
T Consensus 241 ~~~~~~~i~~~~~D 254 (302)
T 3s25_A 241 RGGDNPALCVVKND 254 (302)
T ss_dssp ECSSSCEEEEEETT
T ss_pred ECCCCcEEEEEECC
Confidence 22223455555554
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.22 Score=46.57 Aligned_cols=184 Identities=13% Similarity=0.046 Sum_probs=92.4
Q ss_pred CeEEEEECCCCCeEEeEecC-CCCCeEEEEEcCCCCeEEEEECC------------------------------------
Q 014934 187 NCVYLWNACSSKVTKLCDLG-IDDSVCSVGWANRNTHLAVGTSH------------------------------------ 229 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~-~~~~V~~v~~sp~g~~la~g~~d------------------------------------ 229 (415)
+.+++||..+.+...+.... ....-.++.. .++++++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDY 164 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGG
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccccccc
Confidence 35999999998776655433 2111122222 577888888754
Q ss_pred ---CcEEEEECCCCe--eeEEecCCCcc-EEEEEeeCCEEEEEeC------CCcEEEEECCCCCccEEEeccc---cCCe
Q 014934 230 ---GKVQIWDASRCK--RVRTMEGHRLR-VGALAWSSSLLSSGSR------DKSILQRDIRAQEDFVSKLSGH---KSEV 294 (415)
Q Consensus 230 ---g~V~iwd~~~~~--~~~~l~~h~~~-V~~l~~~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h---~~~V 294 (415)
..+.+||..+.+ .+..+...... ..++...+.+++.|+. ...+.++|+.........+... ....
T Consensus 165 ~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 165 FFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp CCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred CCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 478999998754 33333321111 3333444666666654 3457778873222112222211 1111
Q ss_pred EEEEEeCCCCEEEEEeCC----------------------CcEEEEECCCCce--eEEeccCCCcEEEEEEcCCCCcEEE
Q 014934 295 CGLKWSYDNRELASGGND----------------------NRLFVWNQHSTQP--VLKYCEHTAAVKAIAWSPHLHGLLA 350 (415)
Q Consensus 295 ~~l~~spdg~~lasg~~d----------------------g~I~iwd~~~~~~--~~~~~~h~~~V~~l~~sp~~~~lla 350 (415)
...+...++++++.|+.+ ..+.+||+.+.+- +..+........++.+ ++ .+++
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v 321 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW--NN-SLLI 321 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE--TT-EEEE
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEe--CC-EEEE
Confidence 111222367777777732 2578999886543 2223222222222222 33 4777
Q ss_pred EEcCCCC----CeEEEEECCCCcEEEEe
Q 014934 351 SGGGTAD----RCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 351 sggg~~d----~~I~iwd~~t~~~~~~~ 374 (415)
.||...+ ..|.++++.+++.+...
T Consensus 322 ~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 322 IGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred EeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 7762222 24666688888766544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.18 Score=55.69 Aligned_cols=180 Identities=14% Similarity=0.177 Sum_probs=111.1
Q ss_pred eeEeecCCCcEEEEEcCCeEEEEECCCC-CeEEeEecCC----CCCeEEEEEcCCCCeEEEEE-------CCCcEEEEEC
Q 014934 170 LNLVDWSSHNVLAVGLGNCVYLWNACSS-KVTKLCDLGI----DDSVCSVGWANRNTHLAVGT-------SHGKVQIWDA 237 (415)
Q Consensus 170 i~~l~ws~~~~la~~~d~~V~iwd~~~~-~~~~~~~~~~----~~~V~~v~~sp~g~~la~g~-------~dg~V~iwd~ 237 (415)
|.--.|-..+.|+.-.+..||-|++.+. .+.++++ .| ...|..-..+++.++++..+ -.|.+++|..
T Consensus 108 VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fd-R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~ 186 (1630)
T 1xi4_A 108 VTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 186 (1630)
T ss_pred ceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHh-cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeec
Confidence 5556788888888888999999999642 3444443 22 35577777788888776543 3588999998
Q ss_pred CCCeeeEEecCCCccEEEEEeeC----C-EEEEEeC---CCcEEEEECCCC---C-cc----EEEeccc---cCCeEEEE
Q 014934 238 SRCKRVRTMEGHRLRVGALAWSS----S-LLSSGSR---DKSILQRDIRAQ---E-DF----VSKLSGH---KSEVCGLK 298 (415)
Q Consensus 238 ~~~~~~~~l~~h~~~V~~l~~~~----~-~l~sgs~---dg~I~iwd~~~~---~-~~----~~~~~~h---~~~V~~l~ 298 (415)
+.. .-+.+.||.+....+...+ . +++.+.+ .+.+.|.++... . .. +..+... ..-.-++.
T Consensus 187 er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~ 265 (1630)
T 1xi4_A 187 DRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ 265 (1630)
T ss_pred ccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEE
Confidence 753 3445677776665555542 2 3332322 268888888653 1 00 1111111 12234577
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEE
Q 014934 299 WSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLAS 351 (415)
Q Consensus 299 ~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 351 (415)
.++.-..+..-+.-|.|++||+.++.++..-+-....|...+-.....++++.
T Consensus 266 vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~v 318 (1630)
T 1xi4_A 266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGV 318 (1630)
T ss_pred eccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEE
Confidence 77777788888899999999999998876544333444433333333334443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.22 Score=48.00 Aligned_cols=121 Identities=14% Similarity=0.094 Sum_probs=83.2
Q ss_pred CCCceeccCCC-CCCCcceeEeecCC-CcEEEEEcCCeEEEEECCCCC------------eEEeEecC-----CCCCeEE
Q 014934 153 RSPYKILDAPA-LQDDFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSK------------VTKLCDLG-----IDDSVCS 213 (415)
Q Consensus 153 ~~p~~~ld~~~-l~~~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~------------~~~~~~~~-----~~~~V~~ 213 (415)
...|++|+.|. +.. ..+..+-.|| +++||+..+..|.|-.+..+. ..+.+.++ ....|..
T Consensus 51 ~~~Yk~L~~~~~i~f-~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~q 129 (452)
T 3pbp_A 51 DSLYHSLNFSRHLVL-DDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKK 129 (452)
T ss_dssp CSSCEEEECTTTCCC-CTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEE
T ss_pred CCcceEEecCccccc-CceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeE
Confidence 35799999985 322 1355678888 999999999999999886332 11233333 2567999
Q ss_pred EEEcCC---CCeEEEEECCCcEEEEECCCC--eeeEEec---------CCCccEEEEEeeC--CEEEE--EeCCCcEEEE
Q 014934 214 VGWANR---NTHLAVGTSHGKVQIWDASRC--KRVRTME---------GHRLRVGALAWSS--SLLSS--GSRDKSILQR 275 (415)
Q Consensus 214 v~~sp~---g~~la~g~~dg~V~iwd~~~~--~~~~~l~---------~h~~~V~~l~~~~--~~l~s--gs~dg~I~iw 275 (415)
+.|+|- |..|++-+.|+.|++||+... ++. .+. .....|.+++|.+ -.|.. .++.|.|+-.
T Consensus 130 VlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 130 VLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 999994 568999999999999999752 122 332 2235688889983 34555 4477887653
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.042 Score=51.73 Aligned_cols=110 Identities=10% Similarity=0.006 Sum_probs=70.2
Q ss_pred CeEEEEECCCcEEEEECCCCeeeEEecCC-CccEEEEEee----CCEEEEE--eCCCcEEEEECCCCCccEEEecc----
Q 014934 221 THLAVGTSHGKVQIWDASRCKRVRTMEGH-RLRVGALAWS----SSLLSSG--SRDKSILQRDIRAQEDFVSKLSG---- 289 (415)
Q Consensus 221 ~~la~g~~dg~V~iwd~~~~~~~~~l~~h-~~~V~~l~~~----~~~l~sg--s~dg~I~iwd~~~~~~~~~~~~~---- 289 (415)
..+++++.||.|.-+|..+|+.+=.++.. ..++....-. +..++.+ +.||.|+.+|..++... ..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eeeccccce
Confidence 46888999999999999999888777643 1122211111 2244444 68999999998776422 11111
Q ss_pred ccCCeEE---EEE-e----CCCCEEEEEeCCCcEEEEECCCCceeEEecc
Q 014934 290 HKSEVCG---LKW-S----YDNRELASGGNDNRLFVWNQHSTQPVLKYCE 331 (415)
Q Consensus 290 h~~~V~~---l~~-s----pdg~~lasg~~dg~I~iwd~~~~~~~~~~~~ 331 (415)
...++.. ... . -.+..+.+|+.+|++...|+++|+.+.++..
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1112221 000 0 1456788999999999999999999999863
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.18 E-value=2.1 Score=40.12 Aligned_cols=142 Identities=10% Similarity=0.106 Sum_probs=80.6
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE---e----cCCCccEEEEEeeC-----CEEEEEe-C-------
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT---M----EGHRLRVGALAWSS-----SLLSSGS-R------- 268 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~---l----~~h~~~V~~l~~~~-----~~l~sgs-~------- 268 (415)
.....|+|.|+|++|.++...|.|.+++.. ++.... + .........|++++ ..|.... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 457899999999845566778999999853 332111 1 11234578899985 3444432 2
Q ss_pred CCcEEEEECCCCC----ccEEEecc------ccCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEECCCC--
Q 014934 269 DKSILQRDIRAQE----DFVSKLSG------HKSEVCGLKWSYDNRELASGGN-------------DNRLFVWNQHST-- 323 (415)
Q Consensus 269 dg~I~iwd~~~~~----~~~~~~~~------h~~~V~~l~~spdg~~lasg~~-------------dg~I~iwd~~~~-- 323 (415)
...|..+++.... .....+.. .......|.|.|||.++++-+. .|.|.-+|....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 2356667665331 11111111 1112467999999976666443 246777776532
Q ss_pred ------------ceeEEeccCCCcEEEEEEcCCCCcEEEEEc
Q 014934 324 ------------QPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 324 ------------~~~~~~~~h~~~V~~l~~sp~~~~llasgg 353 (415)
..+... +|. ....++|.|....|+++-.
T Consensus 177 ~~npf~~~~~~~~~i~a~-G~r-np~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSY-GIR-NPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp TTCTTTTSTTSCTTEEEE-CCS-EEEEEEEETTTTEEEEEEE
T ss_pred CCCCCcCCCCCCccEEEE-cCc-CccceEEECCCCCEEEEec
Confidence 112222 343 4688999994334766543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.90 E-value=2.2 Score=39.16 Aligned_cols=125 Identities=8% Similarity=-0.026 Sum_probs=75.8
Q ss_pred CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe----CCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCC
Q 014934 270 KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG----NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL 345 (415)
Q Consensus 270 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~----~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~ 345 (415)
..|+..++...+. ..+.. .. +..|+++++.|+-.. .+..|+.-++... ...++..+.. .+|++++
T Consensus 88 ~~Iy~i~~dg~~~--~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~~~----~~~~~~g 156 (302)
T 3s25_A 88 NSLCRIKRNGHGS--TVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNHYL----FTCNTSD 156 (302)
T ss_dssp EEEEEEETTSCCC--EEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESSCC----CCSEEET
T ss_pred CeEEEEeCCCCcc--eEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCCCc----eEeeEEC
Confidence 4577777776652 22221 11 236788899988765 3446777777643 3444544433 4567888
Q ss_pred CcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 346 HGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 346 ~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+.|+.+.. ....|...++..+.....+. .... ..+.|++.+|+-+.......|..-++..
T Consensus 157 ~~iy~t~~--g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 157 RYFYYNNP--KNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp TEEEEECT--TTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred CEEEEEeC--CCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence 88888764 46889999987765443332 2222 3356899998876433334566655554
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.67 E-value=3.5 Score=40.17 Aligned_cols=101 Identities=11% Similarity=0.089 Sum_probs=60.2
Q ss_pred CCeEEEEEcCCCCeEEEEECC-CcEEEEECCCCee--eEEecC------CCccEEEEEeeC-----CEEEEEeC------
Q 014934 209 DSVCSVGWANRNTHLAVGTSH-GKVQIWDASRCKR--VRTMEG------HRLRVGALAWSS-----SLLSSGSR------ 268 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~d-g~V~iwd~~~~~~--~~~l~~------h~~~V~~l~~~~-----~~l~sgs~------ 268 (415)
....+++|.|+|+++++ ... +.|.+++..+++. +..+.. ....+..|+|++ ..|.....
T Consensus 27 ~~P~~~a~~pdG~l~V~-e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLT-ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEE-ETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEE-EcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 46789999999986665 555 4688888654432 223321 245678999984 44544432
Q ss_pred -------CCcEEEEECCCCC------c-cEEEec-cccCCeEEEEEeCCCCEEEEEe
Q 014934 269 -------DKSILQRDIRAQE------D-FVSKLS-GHKSEVCGLKWSYDNRELASGG 310 (415)
Q Consensus 269 -------dg~I~iwd~~~~~------~-~~~~~~-~h~~~V~~l~~spdg~~lasg~ 310 (415)
...|..++..... + .+..+. ........|+|.|||.++++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2356666654321 1 111121 1123578999999999887754
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=1 Score=46.67 Aligned_cols=150 Identities=15% Similarity=0.091 Sum_probs=83.8
Q ss_pred CCCCeEEEEECC----CcEEEEECCCCeeeEEe--------cCCCccEEEEEe--eCCEEEEEeCCC------cEEEEEC
Q 014934 218 NRNTHLAVGTSH----GKVQIWDASRCKRVRTM--------EGHRLRVGALAW--SSSLLSSGSRDK------SILQRDI 277 (415)
Q Consensus 218 p~g~~la~g~~d----g~V~iwd~~~~~~~~~l--------~~h~~~V~~l~~--~~~~l~sgs~dg------~I~iwd~ 277 (415)
.++..++.|+.+ ..+.+||..+++-...- ......-..+.+ .+.+++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777643 45888998776432221 111223344555 566777777543 5788998
Q ss_pred CCCCccEEEeccccC--CeEEEEEeCCCCEEEEEeCCC--cEEEEECCCCceeEEe-----ccCCCcEEEEEEcCCCCcE
Q 014934 278 RAQEDFVSKLSGHKS--EVCGLKWSYDNRELASGGNDN--RLFVWNQHSTQPVLKY-----CEHTAAVKAIAWSPHLHGL 348 (415)
Q Consensus 278 ~~~~~~~~~~~~h~~--~V~~l~~spdg~~lasg~~dg--~I~iwd~~~~~~~~~~-----~~h~~~V~~l~~sp~~~~l 348 (415)
.+.. ...+..... .-.+++.-.++.+++.||.++ .+.+||..+.+-...- ........++.+......+
T Consensus 476 ~t~~--W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 476 KTRE--WSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTTE--EEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCCc--EEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 8754 222211111 111223324788888888655 6999999876432211 1111222335555553458
Q ss_pred EEEEcCCCC-----CeEEEEECCCCc
Q 014934 349 LASGGGTAD-----RCIRFWNTTTNT 369 (415)
Q Consensus 349 lasggg~~d-----~~I~iwd~~t~~ 369 (415)
++.||...+ ..+.+||+.+..
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCc
Confidence 887763222 468899998877
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=1 Score=39.44 Aligned_cols=136 Identities=10% Similarity=-0.019 Sum_probs=75.2
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCcc--------EEEEEeeC-CEEEEEeCCCcEEEEECCC
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLR--------VGALAWSS-SLLSSGSRDKSILQRDIRA 279 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~--------V~~l~~~~-~~l~sgs~dg~I~iwd~~~ 279 (415)
..++.++|+|+|.+.++ .+|.+.-.+..+.....-+. .... ..++.|.+ ..|..+ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence 46789999999997777 77776666654421111011 1122 35677774 334444 679998887643
Q ss_pred CCc--c----EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc------eeEEec-cCCCcEEEEEEcCCCC
Q 014934 280 QED--F----VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ------PVLKYC-EHTAAVKAIAWSPHLH 346 (415)
Q Consensus 280 ~~~--~----~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~------~~~~~~-~h~~~V~~l~~sp~~~ 346 (415)
... . ...-.+--..+..|.+.|+|.+.|.. |+.++-+..-+.. ....+- ..-..-+-+.|++++.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 221 0 11111122468999999999988887 7775543332111 011111 2222344466888775
Q ss_pred cEEEE
Q 014934 347 GLLAS 351 (415)
Q Consensus 347 ~llas 351 (415)
|++.
T Consensus 195 -l~~v 198 (236)
T 1tl2_A 195 -LFGV 198 (236)
T ss_dssp -EEEE
T ss_pred -EEEE
Confidence 4443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=93.52 E-value=4.9 Score=37.55 Aligned_cols=221 Identities=12% Similarity=0.063 Sum_probs=118.5
Q ss_pred eeEeecCC-Cc-EEEEEcCCeEEEEECCCCCeEE-eEec-----CCCCCeEEEEEcCC---CCeEEEEE-C-------CC
Q 014934 170 LNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTK-LCDL-----GIDDSVCSVGWANR---NTHLAVGT-S-------HG 230 (415)
Q Consensus 170 i~~l~ws~-~~-~la~~~d~~V~iwd~~~~~~~~-~~~~-----~~~~~V~~v~~sp~---g~~la~g~-~-------dg 230 (415)
...|+|.| ++ ++++...+.|++++.. +.... +..+ ........|+++|+ +..|.+.. . ..
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 45788999 67 7777778999999853 33221 1111 12346789999996 44444442 2 23
Q ss_pred cEEEEECCCC----eeeE-EecC------CCccEEEEEeeC-CEEEEEeCC--------------CcEEEEECCCCC---
Q 014934 231 KVQIWDASRC----KRVR-TMEG------HRLRVGALAWSS-SLLSSGSRD--------------KSILQRDIRAQE--- 281 (415)
Q Consensus 231 ~V~iwd~~~~----~~~~-~l~~------h~~~V~~l~~~~-~~l~sgs~d--------------g~I~iwd~~~~~--- 281 (415)
.|..|+.... .... .+.. .......|+|.+ ..|+.+..| |.|.-+|....-
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~ 178 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDD 178 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCC
Confidence 5666666432 1111 1111 111235688873 344444322 467777765420
Q ss_pred ---------ccEEEeccccCCeEEEEEeC-CCCEEEEEeC-CC--cEEEEE--------CCC------------------
Q 014934 282 ---------DFVSKLSGHKSEVCGLKWSY-DNRELASGGN-DN--RLFVWN--------QHS------------------ 322 (415)
Q Consensus 282 ---------~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~-dg--~I~iwd--------~~~------------------ 322 (415)
.....-.+| ....+++|+| +|+++++-.. ++ .|.+.. ...
T Consensus 179 npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~ 257 (353)
T 2g8s_A 179 NPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIV 257 (353)
T ss_dssp CTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSC
T ss_pred CCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCC
Confidence 111112234 3477899999 5655554221 11 222211 000
Q ss_pred ---CceeEEeccCCCcEEEEEEcCCC------CcEEEEEcCCCCCeEEEEECCCCcEEEEee----CCCCEEEEEECCCC
Q 014934 323 ---TQPVLKYCEHTAAVKAIAWSPHL------HGLLASGGGTADRCIRFWNTTTNTHLSCMD----TGSQVCNLVWSKNV 389 (415)
Q Consensus 323 ---~~~~~~~~~h~~~V~~l~~sp~~------~~llasggg~~d~~I~iwd~~t~~~~~~~~----~~~~V~~l~~s~~~ 389 (415)
..++..+. +..++..++|.... ..++++.- ..+.|...++..++.+.... ....+..+++.|+|
T Consensus 258 ~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 334 (353)
T 2g8s_A 258 AGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGAL--KDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG 334 (353)
T ss_dssp TTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEET--TTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred CCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEc--cCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence 12333443 33467788886421 23555543 57888888887665443321 24579999999999
Q ss_pred CeEEEE
Q 014934 390 NELVST 395 (415)
Q Consensus 390 ~~l~s~ 395 (415)
..++++
T Consensus 335 ~lyv~t 340 (353)
T 2g8s_A 335 YLYVLT 340 (353)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 977653
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=3.6 Score=35.97 Aligned_cols=140 Identities=11% Similarity=0.046 Sum_probs=80.1
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCCCCe-------EEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKV-------TKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~-------~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
+..++++| +.+.++ .++.++-.+..++.. .++-..+-. ...++.|.++|.+.++ .||.|.-++..+..
T Consensus 43 ~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 43 FKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSD 118 (236)
T ss_dssp CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred ceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence 44889999 666666 788888887755322 222111111 2578899999998887 56999888763321
Q ss_pred ee------EEe-cCCCccEEEEEeeC-CEEEEEeCCCcEEEEECCCCC------ccEEEeccccCCeEEEEEeCCCCEEE
Q 014934 242 RV------RTM-EGHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQE------DFVSKLSGHKSEVCGLKWSYDNRELA 307 (415)
Q Consensus 242 ~~------~~l-~~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~spdg~~la 307 (415)
.. ..+ ..-=..+..|.+.+ ..|.+.. |+.++-+...... .....-...-..-.-+.|.+++.+++
T Consensus 119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~ 197 (236)
T 1tl2_A 119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFG 197 (236)
T ss_dssp TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEE
T ss_pred CCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEE
Confidence 11 111 11224678888884 4566666 8876543322111 00111112222344567889988877
Q ss_pred EEeCCCcEE
Q 014934 308 SGGNDNRLF 316 (415)
Q Consensus 308 sg~~dg~I~ 316 (415)
+. ++.++
T Consensus 198 v~--~g~~Y 204 (236)
T 1tl2_A 198 VQ--GGKFY 204 (236)
T ss_dssp EE--TTEEE
T ss_pred Ee--CCeEE
Confidence 76 67544
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=92.89 E-value=5.2 Score=36.12 Aligned_cols=221 Identities=16% Similarity=0.150 Sum_probs=115.1
Q ss_pred eeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCC
Q 014934 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 170 i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h 249 (415)
|..++-.....++.. ++.|+.|-....-...+- ......|..|+....- .++. . ||.|..|-......+..-..-
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~ 100 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEA 100 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGG
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCccc
Confidence 334454555666666 999999976542211111 0112356666654332 2333 4 899999976543222111111
Q ss_pred CccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 014934 250 RLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY 329 (415)
Q Consensus 250 ~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~ 329 (415)
...|..++......+.-. ||.|+.|-.....+.- ........|..++...+. .++ -. ||.|+.|-....-.+-.-
T Consensus 101 ~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gqlg~p 175 (282)
T 3qhy_B 101 RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQTTVP 175 (282)
T ss_dssp SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTTSCC
T ss_pred CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCCCCc
Confidence 346888888776666666 9999999876543221 111123457666654332 222 33 788999976542111110
Q ss_pred ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 330 CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 330 ~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
..-...|..|+.-.. +.++. . |+.|..|-.... ++-........|..++-.... .++. . ||.|..|-.
T Consensus 176 ~~~~~~v~~i~~G~~--hs~al-~---~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al---~-~g~v~~wG~ 244 (282)
T 3qhy_B 176 AEAQSGVDDVAGGIF--HSLAL-K---DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL---K-NGKVIAWGS 244 (282)
T ss_dssp GGGGSSEEEEEECSS--EEEEE-E---TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE---E-TTEEEEEST
T ss_pred eecCCCeEEEEecCC--EEEEE-E---CCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEE---E-CCEEEEecC
Confidence 112345777766543 23333 3 788888876542 211111122345555544332 2333 2 778888866
Q ss_pred CCC
Q 014934 409 PTM 411 (415)
Q Consensus 409 ~s~ 411 (415)
...
T Consensus 245 n~~ 247 (282)
T 3qhy_B 245 SRT 247 (282)
T ss_dssp TCC
T ss_pred CCC
Confidence 544
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=92.47 E-value=3.4 Score=38.75 Aligned_cols=109 Identities=12% Similarity=0.015 Sum_probs=67.4
Q ss_pred eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce--eEEe----ccCCCcEEEEEEcCC---CCcEEEEEcCCCC
Q 014934 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP--VLKY----CEHTAAVKAIAWSPH---LHGLLASGGGTAD 357 (415)
Q Consensus 287 ~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~--~~~~----~~h~~~V~~l~~sp~---~~~llasggg~~d 357 (415)
+...-....+|+|.|||++|++--..|.|++++..+++. +..+ .........|+++|+ +..|+++-+...+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 333345678999999999887776689999998766543 2222 123567899999996 4456665321134
Q ss_pred CeEEEEECCCC----------cEE-EEee--CCCCEEEEEECCCCCeEEEE
Q 014934 358 RCIRFWNTTTN----------THL-SCMD--TGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 358 ~~I~iwd~~t~----------~~~-~~~~--~~~~V~~l~~s~~~~~l~s~ 395 (415)
..|.-|....+ +.+ ..+. .......|.|.|+|...++.
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~ 157 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGT 157 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEEC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEE
Confidence 56666665441 111 1222 12234569999999766553
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=91.78 E-value=1.1 Score=44.63 Aligned_cols=120 Identities=14% Similarity=0.003 Sum_probs=83.9
Q ss_pred cEEEEECCC----CCccEEEeccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCCC------ce-------eEEeccC
Q 014934 271 SILQRDIRA----QEDFVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHST------QP-------VLKYCEH 332 (415)
Q Consensus 271 ~I~iwd~~~----~~~~~~~~~~h~~~V~~l~~spdg~~lasg~-~dg~I~iwd~~~~------~~-------~~~~~~h 332 (415)
.+.+.|.+. .......+ .-.....++..+|||++++.++ .+.++.|+|++.- +. +.+. .-
T Consensus 299 gv~ViD~~~~~~~~~~~~~~i-P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~-e~ 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYV-PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP-EL 376 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEE-EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC-BC
T ss_pred CeeEEccccccccCCceEEEE-eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec-cC
Confidence 367777766 33233333 2334566789999999987765 5789999998731 11 2222 22
Q ss_pred CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC----------cEEEEeeCCCCEEEEEE------CCCCCeEEEE
Q 014934 333 TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN----------THLSCMDTGSQVCNLVW------SKNVNELVST 395 (415)
Q Consensus 333 ~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~----------~~~~~~~~~~~V~~l~~------s~~~~~l~s~ 395 (415)
.-.....+|.++| +.+.+-- .|..|..||+... ..+..++...++-.+.- .++|++|++.
T Consensus 377 GlGPlHt~Fd~~G-~aYTtlf--idSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 377 GLGPLHTTFDGRG-NAYTTLF--IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp CSCEEEEEECSSS-EEEEEET--TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred CCcccEEEECCCC-ceEeeee--ecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence 3456778999998 5777765 8999999999753 56778888888877766 6789999884
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=91.50 E-value=9 Score=35.79 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=84.5
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee--eEEec----CCCccEEEEEeeC-----CEEEEE---eCCCcEE
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR--VRTME----GHRLRVGALAWSS-----SLLSSG---SRDKSIL 273 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~--~~~l~----~h~~~V~~l~~~~-----~~l~sg---s~dg~I~ 273 (415)
-.....|+|.|+|.++++--..|.|.+++...++. +..+. ........|++++ ..|+.. ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 35678999999998766644489999998765543 22221 2356688999975 344433 2455676
Q ss_pred EEECCCC----------CccEEEec-cccCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEECCCC------
Q 014934 274 QRDIRAQ----------EDFVSKLS-GHKSEVCGLKWSYDNRELASGGN-------------DNRLFVWNQHST------ 323 (415)
Q Consensus 274 iwd~~~~----------~~~~~~~~-~h~~~V~~l~~spdg~~lasg~~-------------dg~I~iwd~~~~------ 323 (415)
-|..... +..+..+. .....-..|.|.|||.++++.+. .|.|.-.+....
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 6766541 11111121 11123567999999988877542 345555555422
Q ss_pred ---ceeEEeccCCCcEEEEEEcCCCCcEEEEEc
Q 014934 324 ---QPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 324 ---~~~~~~~~h~~~V~~l~~sp~~~~llasgg 353 (415)
..+... +|. ....++|+|++. |+++-.
T Consensus 191 f~~~~i~a~-G~R-Np~Gla~dp~G~-L~~~d~ 220 (347)
T 3das_A 191 FPGSPVYSY-GHR-NVQGLAWDDKQR-LFASEF 220 (347)
T ss_dssp STTCCEEEB-CCS-BCCEEEECTTCC-EEEEEC
T ss_pred CCCCeEEee-CCC-CcceEEECCCCC-EEEEec
Confidence 122222 554 356899999865 666553
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=89.30 E-value=17 Score=35.30 Aligned_cols=59 Identities=8% Similarity=0.121 Sum_probs=39.7
Q ss_pred ceeEeecCC-CcEEEEEcCC-eEEEEECCCCCeEEeEecC-------CCCCeEEEEEcCC---CCeEEEEE
Q 014934 169 YLNLVDWSS-HNVLAVGLGN-CVYLWNACSSKVTKLCDLG-------IDDSVCSVGWANR---NTHLAVGT 227 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~-~V~iwd~~~~~~~~~~~~~-------~~~~V~~v~~sp~---g~~la~g~ 227 (415)
....|+|.| ++++++-..+ .|++++..+++...+..+. .......|+|+|+ +..|.++.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 356889988 7777777654 7999987667665544332 2356789999995 55554443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=88.74 E-value=0.85 Score=45.49 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=56.4
Q ss_pred CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC------Cc-------EEEEeeCCCCEEEEEECCCCCeEEEEEecCC
Q 014934 334 AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT------NT-------HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 334 ~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t------~~-------~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
.....+..+|+|++++++|. .+.++.++|+.. ++ ....+..+-.....+|.++|+ ..++ -+-|
T Consensus 323 ksPHGv~vsPDGkyi~v~GK--LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~-aYTt-lfid 398 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGK--LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN-AYTT-LFID 398 (638)
T ss_dssp SSCCCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE-EEEE-ETTT
T ss_pred CCCcceeeCCCCCEEEEcCC--CCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc-eEee-eeec
Confidence 34456889999998888876 899999999984 22 244556677889999999993 3333 6889
Q ss_pred CcEEEEECCC
Q 014934 401 NQIIVWRYPT 410 (415)
Q Consensus 401 g~I~vw~~~s 410 (415)
.+|.-|++..
T Consensus 399 SqvvkWni~~ 408 (638)
T 3sbq_A 399 SQVVKWNMEE 408 (638)
T ss_dssp TEEEEEEHHH
T ss_pred ceEEEEeccH
Confidence 9999999854
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=88.45 E-value=29 Score=37.09 Aligned_cols=79 Identities=14% Similarity=0.029 Sum_probs=51.7
Q ss_pred cEEEEEeeCCEEEEEeCCCcEEEEECCCCCc--------------cEEE-e-----cc---ccCCeEEEEEeCCCCEEEE
Q 014934 252 RVGALAWSSSLLSSGSRDKSILQRDIRAQED--------------FVSK-L-----SG---HKSEVCGLKWSYDNRELAS 308 (415)
Q Consensus 252 ~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~--------------~~~~-~-----~~---h~~~V~~l~~spdg~~las 308 (415)
+..-.+.+++.++++-.||.+...+-+.... .+.. + .. -...+.+++..++..++++
T Consensus 173 p~~l~av~~~~l~Vsl~dGgLlrl~r~~~~~~~~~~~f~~~s~~~sl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lft 252 (950)
T 4gq2_M 173 PDLMAAISTSEICVSFFNGGLTKIILNPKDASHYEQHIDDSSYLFSLKKYLSLQAFKADYRSPNTIISMIFLSTYNVLVM 252 (950)
T ss_dssp EEEEEECSSSEEEEEETTSCEEEEEEETTTTEEEEEEECCCCCCCBCC-------CCSSCCCTTCEEEEEEETTTTEEEE
T ss_pred ceEEEEEcCCeEEEEECCCCEEEEEecCCCCCcceeeecCCcHHHhhhhhcccccCCCCCCCcceEEEEeecCCCcEEEE
Confidence 4444455678888888888776543222110 0000 0 11 1124667778888899999
Q ss_pred EeCCCcEEEEECCCCceeEEec
Q 014934 309 GGNDNRLFVWNQHSTQPVLKYC 330 (415)
Q Consensus 309 g~~dg~I~iwd~~~~~~~~~~~ 330 (415)
-+.|++++||++.+++++.+..
T Consensus 253 l~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 253 LSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EETTCEEEEEETTTTEEEEEEE
T ss_pred EECCCEEEEEECCCCCeEeeec
Confidence 9999999999999998887753
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.66 E-value=29 Score=32.54 Aligned_cols=234 Identities=11% Similarity=0.107 Sum_probs=128.3
Q ss_pred eeEeecCCCcEEEEEcCCeEEEEECCCC-C--------e--EEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC
Q 014934 170 LNLVDWSSHNVLAVGLGNCVYLWNACSS-K--------V--TKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 170 i~~l~ws~~~~la~~~d~~V~iwd~~~~-~--------~--~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~ 238 (415)
+..++-.....++...++.|+.|-.... + . ...+..-....+..++++....+.++-+.+|.|..|-..
T Consensus 55 i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n 134 (389)
T 3kci_A 55 PVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA 134 (389)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC
T ss_pred eEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCC
Confidence 3344444456777888999999964321 1 1 111111123345667777777777777899999999543
Q ss_pred CC-----------eeeEEecC-CCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCc----------cEEEecc-ccCCeE
Q 014934 239 RC-----------KRVRTMEG-HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQED----------FVSKLSG-HKSEVC 295 (415)
Q Consensus 239 ~~-----------~~~~~l~~-h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~----------~~~~~~~-h~~~V~ 295 (415)
.. .....+.. ....|..|+......+.-..||.|+.|-.....+ ....+.. ....|.
T Consensus 135 ~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~ 214 (389)
T 3kci_A 135 EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVV 214 (389)
T ss_dssp GGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred CCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEE
Confidence 21 11112221 2236788887777777888999999997543110 0111111 123466
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCC-c---------e-eEEecc-CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 296 GLKWSYDNRELASGGNDNRLFVWNQHST-Q---------P-VLKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 296 ~l~~spdg~~lasg~~dg~I~iwd~~~~-~---------~-~~~~~~-h~~~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
.++......+.+.-..||.|+.|-.... + . ...+.. ....|..|+.-.. +.++.. .|+.|..|
T Consensus 215 ~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~alt---~~G~v~~w 289 (389)
T 3kci_A 215 DIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVALT---KSGAVYTW 289 (389)
T ss_dssp EEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEEEE---TTSCEEEE
T ss_pred EEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC--EEEEEe---CCCeEEEE
Confidence 6665433356666778999999975421 0 1 111211 1224666665543 234433 58999999
Q ss_pred ECCCC-c----------EEEEee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 364 NTTTN-T----------HLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 364 d~~t~-~----------~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
-.... + ....+. .+..|..++...... ++. ..||.|+.|-....-
T Consensus 290 G~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~-~al---~~~G~v~~wG~n~~G 347 (389)
T 3kci_A 290 GKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHC-VCC---TEDGEVYTWGDNDEG 347 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEE-EEE---ETTCCEEEEECCTTS
T ss_pred eCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeE-EEE---CCCCCEEEeeCCCCC
Confidence 76421 0 111111 234566666554432 222 368899999876543
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=83.51 E-value=29 Score=32.40 Aligned_cols=208 Identities=8% Similarity=-0.009 Sum_probs=100.7
Q ss_pred cEEEEEcCCeEEEEECCC--CCeEEeEecCCCCCeEEEEEcC-CCCeEEEEECCC----cEEEEECCCCeeeEEec----
Q 014934 179 NVLAVGLGNCVYLWNACS--SKVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHG----KVQIWDASRCKRVRTME---- 247 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~--~~~~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg----~V~iwd~~~~~~~~~l~---- 247 (415)
..|.++....+++++... ..............|.+|++.| +...|.+++..| .|...+ ..++....+.
T Consensus 23 g~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 23 VMLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPA 101 (394)
T ss_dssp CEEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCC
T ss_pred CEEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcccc
Confidence 345555455577776543 2333321112246799999998 334455555555 343332 2222222221
Q ss_pred --C--------CCccEEEEEee----CCEEEEEeCCCcEEEEECCCCCccEEEecc-------------------ccCCe
Q 014934 248 --G--------HRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQEDFVSKLSG-------------------HKSEV 294 (415)
Q Consensus 248 --~--------h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-------------------h~~~V 294 (415)
. ....|.+|++. ++.|..++..+.|...+-.... ...+.. ....|
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~t--W~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGAS--WEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSB--CEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCC--eEECcCccCCccccccccccccCCCCCCce
Confidence 1 11357788886 5677777766666655322221 122211 12357
Q ss_pred EEEEEeCC-CCEEEEEeCCCcEEEEECCCCceeEEecc-----C--------CCcEEEEEEcCCCCcEEEEEcCCCCCeE
Q 014934 295 CGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLKYCE-----H--------TAAVKAIAWSPHLHGLLASGGGTADRCI 360 (415)
Q Consensus 295 ~~l~~spd-g~~lasg~~dg~I~iwd~~~~~~~~~~~~-----h--------~~~V~~l~~sp~~~~llasggg~~d~~I 360 (415)
.+|.++|. ...|..+..++.|+..+- .++....+.. + ...+.+|++.|.....+..+. .+.|
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~---~~gl 255 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN---HCGI 255 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE---TTEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc---CCeE
Confidence 88999873 444555544454544332 2222222211 0 134889999997433444443 3334
Q ss_pred EEEECCCCcEEEEeeC---C---CCEEEEEECCC-CCeEEE
Q 014934 361 RFWNTTTNTHLSCMDT---G---SQVCNLVWSKN-VNELVS 394 (415)
Q Consensus 361 ~iwd~~t~~~~~~~~~---~---~~V~~l~~s~~-~~~l~s 394 (415)
...+ ..|+....+.. . ..+..+.++|. ...|.+
T Consensus 256 ~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~ 295 (394)
T 3b7f_A 256 YRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWV 295 (394)
T ss_dssp EEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEE
T ss_pred EEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEE
Confidence 4433 23444433321 1 34567788763 333444
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=82.68 E-value=29 Score=33.72 Aligned_cols=106 Identities=11% Similarity=0.081 Sum_probs=62.3
Q ss_pred CCeEEEEEeCCCC-EEEEEeCCCcEEEEECCCC---ceeEEecc---------CCCcEEEEEEcCC---CCcEEEEEcCC
Q 014934 292 SEVCGLKWSYDNR-ELASGGNDNRLFVWNQHST---QPVLKYCE---------HTAAVKAIAWSPH---LHGLLASGGGT 355 (415)
Q Consensus 292 ~~V~~l~~spdg~-~lasg~~dg~I~iwd~~~~---~~~~~~~~---------h~~~V~~l~~sp~---~~~llasggg~ 355 (415)
..-..|+|.|||. .|+++...|.|++++.... ..+..+.. .......|+|+|+ ...++++-...
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999996 4555567899999975432 23333221 1457889999996 33465553210
Q ss_pred CC----------CeEEEEECCC----------CcEEEEee---CCCCEEEEEECCCCCeEEEEEec
Q 014934 356 AD----------RCIRFWNTTT----------NTHLSCMD---TGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 356 ~d----------~~I~iwd~~t----------~~~~~~~~---~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
.+ ..|.-|.+.. .+.+..+. .......|.|.|||...+++ |.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~-Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIIL-GD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEE-CC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEe-CC
Confidence 11 1344455532 12333332 23447789999999766654 53
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=81.84 E-value=15 Score=33.02 Aligned_cols=161 Identities=14% Similarity=0.111 Sum_probs=84.4
Q ss_pred eeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCC
Q 014934 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 170 i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h 249 (415)
+..++-.....++.. ++.|+.|-........+. ......|..|+.... +.++-. +|.|..|-......+..-..-
T Consensus 104 v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~-~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~p~~~ 178 (282)
T 3qhy_B 104 VDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVP-AEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTVPAEA 178 (282)
T ss_dssp EEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCC-GGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGG
T ss_pred eEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCC-ccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCCceec
Confidence 555666666777777 999999976542211111 012345666654332 222223 788888876442222111112
Q ss_pred CccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 014934 250 RLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY 329 (415)
Q Consensus 250 ~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~ 329 (415)
...|..++......+.- .||.|+.|-.....+.- .-......|..++..... .+|.. ||.|+.|=.....++.
T Consensus 179 ~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~wG~n~~gq~~-- 251 (282)
T 3qhy_B 179 QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTT-VPTEALSGVSAIASGEWY-SLALK--NGKVIAWGSSRTAPSS-- 251 (282)
T ss_dssp GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTC-CCGGGGSSCCEEEECSSC-EEEEE--TTEEEEESTTCCCCGG--
T ss_pred CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCC-CCcccCCCceEEEcCCCE-EEEEE--CCEEEEecCCCCcccc--
Confidence 34577777664444444 69999999765443221 111112356666654333 33333 8889988765543321
Q ss_pred ccCCCcEEEEEEcCC
Q 014934 330 CEHTAAVKAIAWSPH 344 (415)
Q Consensus 330 ~~h~~~V~~l~~sp~ 344 (415)
-...|..|+--..
T Consensus 252 --v~~~v~~iaaG~~ 264 (282)
T 3qhy_B 252 --VQSGVSSIEAGPN 264 (282)
T ss_dssp --GSSCEEEEEECSS
T ss_pred --CCCCcEEEEECcC
Confidence 1235666655544
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=81.77 E-value=32 Score=31.66 Aligned_cols=220 Identities=14% Similarity=0.056 Sum_probs=121.5
Q ss_pred CCcceeEeecCC-CcEEEEEcCCeEEEEEC---CCC----CeE---EeEecCCCCCeEEEEEcC---CCCeEEEEECCCc
Q 014934 166 DDFYLNLVDWSS-HNVLAVGLGNCVYLWNA---CSS----KVT---KLCDLGIDDSVCSVGWAN---RNTHLAVGTSHGK 231 (415)
Q Consensus 166 ~~~~i~~l~ws~-~~~la~~~d~~V~iwd~---~~~----~~~---~~~~~~~~~~V~~v~~sp---~g~~la~g~~dg~ 231 (415)
+|+....+.-+. +.+|.....|.+|-... ... .-. .++.+...+.|.++.... +..++++.+.+|.
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 455555555555 66777888888776653 221 111 123334456677665443 5779999999999
Q ss_pred EEEEECCCC-------eeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECC--CCC---c---cEEEec-cccCCe
Q 014934 232 VQIWDASRC-------KRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIR--AQE---D---FVSKLS-GHKSEV 294 (415)
Q Consensus 232 V~iwd~~~~-------~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~--~~~---~---~~~~~~-~h~~~V 294 (415)
|+--.+... .....+.....-+.....+ .+.|+..+..|.++.+... .-. . =+..+. .....|
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~V 200 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRL 200 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCE
T ss_pred EEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEE
Confidence 999876432 2222334433334333333 4678888999998888766 211 0 011111 123457
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCC-------ceeE--EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 295 CGLKWSYDNRELASGGNDNRLFVWNQHST-------QPVL--KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 295 ~~l~~spdg~~lasg~~dg~I~iwd~~~~-------~~~~--~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
.++..-+++..|+..+..|.++.-.+..- +-+. .+..-.+.+..+........+++.. .+|.+.-++.
T Consensus 201 v~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T---~~G~~ir~~~ 277 (327)
T 3uc1_A 201 LSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVT---SGGGVIRTAA 277 (327)
T ss_dssp EEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEE---GGGCEEEEEG
T ss_pred EEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEc---CCCeEEEEeh
Confidence 77766666778999999999988775321 2222 2222234455544433333455544 3666666655
Q ss_pred CC---------CcEEEEeeCCCCEEEEEECCC
Q 014934 366 TT---------NTHLSCMDTGSQVCNLVWSKN 388 (415)
Q Consensus 366 ~t---------~~~~~~~~~~~~V~~l~~s~~ 388 (415)
.. |-.+-.+..+..|.++...+.
T Consensus 278 ~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~ 309 (327)
T 3uc1_A 278 RQVRKAGRQTKGVRLMNLGEGDTLLAIARNAE 309 (327)
T ss_dssp GGSCBCCTTSCCEECTTCCTTCCEEEEEECC-
T ss_pred hhccccCCCCCCeEeEecCCCCEEEEEEEcCC
Confidence 32 111222234566766665543
|
| >2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.35 E-value=0.73 Score=24.82 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=9.7
Q ss_pred CCCcccCCCCCC
Q 014934 45 YSDRFIPSRSSS 56 (415)
Q Consensus 45 ~~drfip~r~~~ 56 (415)
..++|||+|-+.
T Consensus 4 ~~eKFiPsRPAP 15 (26)
T 2rqw_B 4 ANGKFIPSRPAP 15 (26)
T ss_dssp CCCSSCCSSCCC
T ss_pred cccccccCCCCC
Confidence 458999999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 415 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-19 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-17 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-12 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-11 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.001 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.001 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.004 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 4e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.004 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 85.6 bits (210), Expect = 4e-19
Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 6/181 (3%)
Query: 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246
+ + G V S+ A G ++WD +T
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 247 EGHRLRVGALAWS--SSLLSSGSRDKSI-LQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
GH + A+ + + ++GS D + L QE + + +S
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363
R L +G +D VW+ H V + + +A+G D ++ W
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM-AVATGS--WDSFLKIW 339
Query: 364 N 364
N
Sbjct: 340 N 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.4 bits (155), Expect = 5e-12
Identities = 34/247 (13%), Positives = 72/247 (29%), Gaps = 7/247 (2%)
Query: 173 VDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGK 231
+ W + +L + + + V + +A ++A G
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 232 VQIWDASRCKR----VRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKL 287
I++ + R + GH + + S + +
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 288 SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHG 347
+GH +V L + D R SG D +W+ + H + + AI + P+ +
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 348 LLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407
R S + + ++ +SK+ L++ GY VW
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNVWD 298
Query: 408 YPTMSKV 414
+
Sbjct: 299 ALKADRA 305
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.3 bits (134), Expect = 2e-09
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 5/105 (4%)
Query: 173 VDWSSH-NVLAVGL--GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH 229
+ + + N A G C ++ I + SV ++ L G
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 230 GKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSI 272
+WDA + R + GH RV L + +++GS D +
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.5 bits (119), Expect = 1e-07
Identities = 21/125 (16%), Positives = 41/125 (32%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L GH +++ + W D+R L S D +L +W+ ++T V ++ V A++P +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406
+ G N +S G + + T +
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 407 RYPTM 411
Sbjct: 171 IETGQ 175
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.8 bits (99), Expect = 5e-05
Identities = 29/169 (17%), Positives = 53/169 (31%), Gaps = 4/169 (2%)
Query: 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY 301
RT+ GH ++ A+ W S LL S S+D ++ D V + S V ++
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAP 107
Query: 302 DNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIR 361
+A GG DN ++N + + ++ A + D
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167
Query: 362 FWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410
W+ T + + + L + G +W
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS-GACDASAKLWDVRE 215
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 21/208 (10%), Positives = 50/208 (24%), Gaps = 2/208 (0%)
Query: 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSS 265
G + ++ W + L + GK+ IWD+ +V + V A++ S
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 266 GSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRL-FVWNQHSTQ 324
+ + + + S + + +
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVCNL 383
+ T + G D + W+ S + +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 384 VWSKNVNELVSTHGYSQNQIIVWRYPTM 411
+ N N + + ++ R
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQE 260
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.2 bits (191), Expect = 9e-17
Identities = 35/211 (16%), Positives = 72/211 (34%), Gaps = 26/211 (12%)
Query: 175 WSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQI 234
+ + + + + G + V V T +A ++ V++
Sbjct: 110 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 169
Query: 235 WDASRCKRVRTMEGHRLRVGALAW----------------------SSSLLSSGSRDKSI 272
W + + + HR V ++W L SGSRDK+I
Sbjct: 170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 229
Query: 273 LQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH 332
D+ + L GH + V G+ + + + S +D L VW+ + + + H
Sbjct: 230 KMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 288
Query: 333 TAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363
V ++ + + +G D+ ++ W
Sbjct: 289 EHFVTSLDFHKT-APYVVTGS--VDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 69.0 bits (167), Expect = 1e-13
Identities = 24/155 (15%), Positives = 56/155 (36%), Gaps = 3/155 (1%)
Query: 166 DDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV 225
+D + + ++ A + + + + + + L
Sbjct: 163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222
Query: 226 GTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSS--LLSSGSRDKSILQRDIRAQEDF 283
G+ +++WD S + T+ GH V + + S + S + DK++ D + +
Sbjct: 223 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR-C 281
Query: 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318
+ L+ H+ V L + + +G D + VW
Sbjct: 282 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.9 bits (159), Expect = 1e-12
Identities = 45/271 (16%), Positives = 90/271 (33%), Gaps = 65/271 (23%)
Query: 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAW------- 258
G V V + + + + +++WD RT++GH V +++
Sbjct: 15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74
Query: 259 -------------------------------------SSSLLSSGSRDKSILQRDIRAQE 281
+ + S SRDK+I +++
Sbjct: 75 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134
Query: 282 DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW 341
V +GH+ V ++ + D +AS ND + VW + + + EH V+ I+W
Sbjct: 135 -CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 193
Query: 342 SPHLHGLLASGG-----------------GTADRCIRFWNTTTNTHLSCMDT-GSQVCNL 383
+P S G+ D+ I+ W+ +T L + + V +
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 253
Query: 384 VWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
++ ++S + VW Y +
Sbjct: 254 LFHSGGKFILS--CADDKTLRVWDYKNKRCM 282
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.3 bits (121), Expect = 8e-08
Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 2/130 (1%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL 345
LSGH+S V + + + S D + VW+ + HT +V+ I++
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 346 HGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405
L + + F + D + N + +VS ++
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS--IMPNGDHIVSASRDKTIKMWE 129
Query: 406 WRYPTMSKVL 415
+ K
Sbjct: 130 VQTGYCVKTF 139
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.3 bits (103), Expect = 1e-05
Identities = 33/178 (18%), Positives = 67/178 (37%), Gaps = 7/178 (3%)
Query: 239 RCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCG 296
R + GHR V + + S++ S S D +I D + F L GH V
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-FERTLKGHTDSVQD 64
Query: 297 LKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTA 356
+ + + + LAS D + +W+ + + H V +++ P+ ++++
Sbjct: 65 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR--- 121
Query: 357 DRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
D+ I+ W T + + +V L+++ + + VW T
Sbjct: 122 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS-CSNDQTVRVWVVATKECK 178
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.6 bits (171), Expect = 5e-14
Identities = 45/258 (17%), Positives = 91/258 (35%), Gaps = 27/258 (10%)
Query: 132 FDDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYL 191
F D + + + R KI+ + +L + S + L G G+
Sbjct: 129 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 188
Query: 192 WNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME---- 247
+ L D ++A G+ V++WD+ V ++
Sbjct: 189 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 248
Query: 248 ---GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED-----------FVSKLSGHK 291
GH+ V ++ ++ + SGS D+S+ +++ + GHK
Sbjct: 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308
Query: 292 SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL-----H 346
V + + ++ + SG D + W++ S P+L H +V ++A + +
Sbjct: 309 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368
Query: 347 GLLASGGGTADRCIRFWN 364
+ A+G D R W
Sbjct: 369 NVFATGS--GDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.3 bits (113), Expect = 9e-07
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
N +S ++ +G D V SV + ++ G+ V WD +
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 345
Query: 246 MEGHRLRVGALAWSSS--------LLSSGSRDKSILQRDIR 278
++GHR V ++A ++ + ++GS D +
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.7 bits (109), Expect = 3e-06
Identities = 50/326 (15%), Positives = 98/326 (30%), Gaps = 56/326 (17%)
Query: 140 VSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSH-------------NVLAVGLG 186
+ V K + Y IL PAL + + L H LA G
Sbjct: 23 LDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCN 82
Query: 187 NCVYLWNACSSK-----------------VTKLCDLGIDDSVCSVGWANRNTHLAVGTSH 229
++ + D + SV ++ LA G
Sbjct: 83 KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 142
Query: 230 GKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSG-SRDKSILQRDIRAQEDFVSKLS 288
++IWD K V ++GH + +L + S ++ LS
Sbjct: 143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 202
Query: 289 GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS-------TQPVLKYCEHTAAVKAIAW 341
D + +A+G D + VW+ + H +V ++ +
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 262
Query: 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-------------GSQVCNLVWSKN 388
+ +++ G+ DR ++ WN + S T V ++ ++N
Sbjct: 263 TRDGQSVVS---GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN 319
Query: 389 VNELVSTHGYSQNQIIVWRYPTMSKV 414
++S G ++ W + + +
Sbjct: 320 DEYILS--GSKDRGVLFWDKKSGNPL 343
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 44/273 (16%), Positives = 82/273 (30%), Gaps = 44/273 (16%)
Query: 140 VSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKV 199
+HS P + + DA Q + Y L + + + V L
Sbjct: 10 ANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVEL-------------- 55
Query: 200 TKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS 259
L VC V ++N +LA G + Q++ S V +
Sbjct: 56 --HKSLDHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENL 112
Query: 260 SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319
++ S + + +S D + LA+G D + +W+
Sbjct: 113 NT-----------------------SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149
Query: 320 QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ 379
+ + V+ H + I + G+ DR +R W+ T +
Sbjct: 150 IENRKIVMILQGHE---QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG 206
Query: 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412
V + S + ++ G + VW T
Sbjct: 207 VTTVAVSPGDGKYIAA-GSLDRAVRVWDSETGF 238
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.6 bits (158), Expect = 2e-12
Identities = 42/242 (17%), Positives = 82/242 (33%), Gaps = 13/242 (5%)
Query: 173 VDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKV 232
V + V G+ + + + + + G V
Sbjct: 100 VRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV 159
Query: 233 QIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKS 292
++WD + T++GH RV +L + + SGS D SI D+ + L+GH+S
Sbjct: 160 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQS 218
Query: 293 EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASG 352
G + L SG D+ + +W+ + Q + A+ + +
Sbjct: 219 LTSG--MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276
Query: 353 GGTADRCIRFWNTTTNTHLSCMDT------GSQVCNLVWSKNVNELV--STHGYSQNQII 404
D ++ W+ T + + T G V + S S +G + +++
Sbjct: 277 S--DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 334
Query: 405 VW 406
V
Sbjct: 335 VL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 9/122 (7%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L GH V + + SG +DN L VW+ + + + HT V + ++
Sbjct: 12 LKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII 70
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406
+ R C+ T + V +++E G + VW
Sbjct: 71 --------ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122
Query: 407 RY 408
Sbjct: 123 DI 124
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 3e-06
Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 13/223 (5%)
Query: 192 WNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL 251
W K K+ G DD V + + G+ +++W A K +RT+ GH
Sbjct: 1 WRRGELKSPKVLK-GHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58
Query: 252 RVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311
V + ++ + + E + + + + SG
Sbjct: 59 GVWSSQMRDNI---IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115
Query: 312 DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371
D L VW+ + Q + H AAV+ + + A D ++ W+ T T L
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY-----DFMVKVWDPETETCL 170
Query: 372 SCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
+ G + +VS G I VW T + +
Sbjct: 171 HTL-QGHTNRVYSLQFDGIHVVS--GSLDTSIRVWDVETGNCI 210
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 8e-11
Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 17/187 (9%)
Query: 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246
+ +W+ S L + + + ++ + +++W+ S C+ VRT+
Sbjct: 115 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174
Query: 247 EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306
GH+ + L + L+ SGS D +I DI + C +DN+ +
Sbjct: 175 NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC---IRFDNKRI 231
Query: 307 ASGGNDNRLFVWN---------QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTAD 357
SG D ++ VW+ T + EH+ V + + + S D
Sbjct: 232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSS--HD 286
Query: 358 RCIRFWN 364
I W+
Sbjct: 287 DTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (131), Expect = 4e-09
Identities = 27/153 (17%), Positives = 61/153 (39%), Gaps = 13/153 (8%)
Query: 175 WSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQI 234
+ +++ + +WN + + + + R+ + G+S +++
Sbjct: 146 FDDKYIVSASGDRTIKVWNTSTCEFVRTLN---GHKRGIACLQYRDRLVVSGSSDNTIRL 202
Query: 235 WDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDF--------VSK 286
WD +R +EGH V + + + + SG+ D I D+ A D +
Sbjct: 203 WDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT 262
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319
L H V L++ D ++ S +D+ + +W+
Sbjct: 263 LVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (109), Expect = 2e-06
Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 8/195 (4%)
Query: 220 NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRA 279
+ + G ++IWD + + R + GH V L + ++ +GS D ++ D+
Sbjct: 25 DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT 84
Query: 280 QEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAI 339
E + + ++ + + + + + VW+ S + A+
Sbjct: 85 GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS---IAVWDMASPTDITLRRVLVGHRAAV 141
Query: 340 AWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS 399
+ S G DR I+ WNT+T + T + + + + G S
Sbjct: 142 NVVDFDDKYIVSASG--DRTIKVWNTSTC---EFVRTLNGHKRGIACLQYRDRLVVSGSS 196
Query: 400 QNQIIVWRYPTMSKV 414
N I +W + +
Sbjct: 197 DNTIRLWDIECGACL 211
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.001
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL 345
S V L YD++++ SG DN + +W++++ + HT +V + + +
Sbjct: 11 RSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.002
Identities = 28/174 (16%), Positives = 45/174 (25%), Gaps = 8/174 (4%)
Query: 241 KRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS 300
+R+ V L + + SG RD +I D E L+GH V L++
Sbjct: 6 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQYD 64
Query: 301 YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360
+T A + DR I
Sbjct: 65 ERV-------IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSI 117
Query: 361 RFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
W+ + T ++ V + ++ I VW T V
Sbjct: 118 AVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV 171
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.0 bits (138), Expect = 6e-10
Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 4/130 (3%)
Query: 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPH 344
+ L GH + V +++ + +G +D + V++ + + +L+ H V A+ ++
Sbjct: 6 TTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH- 63
Query: 345 LHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQII 404
G+L SG + TH+ + C + + + G N +
Sbjct: 64 -GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI-VTGSRDNTLH 121
Query: 405 VWRYPTMSKV 414
VW+ P S V
Sbjct: 122 VWKLPKESSV 131
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 6e-09
Identities = 28/208 (13%), Positives = 57/208 (27%), Gaps = 3/208 (1%)
Query: 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLL 263
G SV + + ++ G ++++D+ K + + GH V AL ++ L+
Sbjct: 10 GHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68
Query: 264 SSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
S + + + V + + + + + +G DN L VW
Sbjct: 69 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNL 383
V + E + G D V ++
Sbjct: 129 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV 188
Query: 384 VWSKNVNELVSTHGYSQNQIIVWRYPTM 411
K + L + I
Sbjct: 189 AQMKCLYILSGHTDRIYSTIYDHERKRC 216
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.5 bits (90), Expect = 5e-04
Identities = 9/92 (9%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
Query: 227 TSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK 286
++ + + S ++L SGS + ++R+ + +
Sbjct: 261 ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHAN 319
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318
+ ++ + + +A+ D + F+
Sbjct: 320 ILKDADQIWSVNFKGKTL-VAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.001
Identities = 9/76 (11%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE-HTAAVKAIAWSPHLHGL 348
H + + + Y + + G++N+ ++N S + V + ++ + L
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTL 337
Query: 349 LASGGGTADRCIRFWN 364
+A+ + +
Sbjct: 338 VAAVEKDGQSFLEILD 353
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.6 bits (137), Expect = 9e-10
Identities = 23/196 (11%), Positives = 66/196 (33%), Gaps = 6/196 (3%)
Query: 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDAS--RCKRVRTMEGHRLRVGALAWS--SSLLS 264
+ + W T +A+ ++ +V I++ S + +V ++ H +V + W+ S+ +
Sbjct: 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67
Query: 265 SGSRDKSI-LQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
+ D++ + + ++W+ + ++ A G + +
Sbjct: 68 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 127
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLA-SGGGTADRCIRFWNTTTNTHLSCMDTGSQVCN 382
+++ S H G+ D R ++
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187
Query: 383 LVWSKNVNELVSTHGY 398
+ + + + E S+ G+
Sbjct: 188 MPFGELMFESSSSCGW 203
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.5 bits (129), Expect = 8e-09
Identities = 19/159 (11%), Positives = 47/159 (29%), Gaps = 5/159 (3%)
Query: 253 VGALAWSS--SLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSYDNRELASG 309
+ AW+ + ++ + + + + V +L H +V G+ W+ D+ + +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 310 GNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369
G D +VW A + + G + + N
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 370 HLSCMDTGSQVCNLVWSKNVNELVSTHGY--SQNQIIVW 406
C + + V S + + + ++
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.7 bits (127), Expect = 2e-08
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 6/129 (4%)
Query: 288 SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC--EHTAAVKAIAWSPHL 345
S + W+ D ++A N++ + ++ + + V + EH V + W+P
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD- 62
Query: 346 HGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV-CNLVWSKNVNELVSTHGYSQNQII 404
+ + G DR W T + NE G I
Sbjct: 63 SNRIVTCG--TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 120
Query: 405 VWRYPTMSK 413
+ + +
Sbjct: 121 ICYFEQEND 129
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.2 bits (97), Expect = 8e-05
Identities = 17/164 (10%), Positives = 45/164 (27%), Gaps = 4/164 (2%)
Query: 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS 228
+++ V +S++ + + + A + K + L + + L
Sbjct: 203 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH 262
Query: 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS 288
++ + G + ++ + S
Sbjct: 263 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS 322
Query: 289 GHKSEVCGLKWS----YDNRELASGGNDNRLFVWNQHSTQPVLK 328
HK+ V + + + G D + +W+ S + LK
Sbjct: 323 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 366
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.4 bits (134), Expect = 2e-09
Identities = 13/135 (9%), Positives = 36/135 (26%), Gaps = 3/135 (2%)
Query: 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN---QHSTQPVLKYCEHTAAVKAIA 340
V K + +K L D L V+ Q +L+ + +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400
+ + + G + + + + + + ++L++
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
Query: 401 NQIIVWRYPTMSKVL 415
++I R +
Sbjct: 124 IEVIDPRNYGDGVIA 138
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 2e-05
Identities = 14/176 (7%), Positives = 54/176 (30%), Gaps = 9/176 (5%)
Query: 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDA---SRCKRVRTMEGHRLRVGALAWSSS--- 261
D + + + L + + G + ++ ++ + ++ + + +
Sbjct: 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL 70
Query: 262 LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321
+ G+ IL+ D+ F + + + Y + +L + D + V +
Sbjct: 71 QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130
Query: 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGG---GTADRCIRFWNTTTNTHLSCM 374
+ + ++ + + S G + ++++ +
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 16/149 (10%), Positives = 33/149 (22%), Gaps = 4/149 (2%)
Query: 241 KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS--GHKSEVCG 296
+ V+ + + + + SLL S D S+ Q V L +K +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 297 LKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTA 356
+ + G + P + + A I
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121
Query: 357 DRCIRFWNTTTNTHLSCMDTGSQVCNLVW 385
+ + + V
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVK 150
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.8 bits (83), Expect = 0.004
Identities = 13/112 (11%), Positives = 37/112 (33%), Gaps = 1/112 (0%)
Query: 263 LSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322
D + +R K + V +++S ++ L + G+D + WN +
Sbjct: 223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282
Query: 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
+ + + + + + + L + + + T + S +
Sbjct: 283 RKKIKNFAKFNEDS-VVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSI 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 3e-09
Identities = 24/178 (13%), Positives = 53/178 (29%), Gaps = 4/178 (2%)
Query: 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246
+ + T + S + + R R
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220
Query: 247 EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306
++ +L + + +S + + +L H+S V LK++Y +
Sbjct: 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF 280
Query: 307 ASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364
S G DN L W + + + +++V + S + +G G D+ +
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVD-DKYIVTGSG--DKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 3e-06
Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 5/147 (3%)
Query: 175 WSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQI 234
S+ G + + + +L + S+G+ LAVG V++
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
Query: 235 WDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKS 292
++ + + H V +L ++ S +D + S S
Sbjct: 251 LHVNKPDKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--SKESS 307
Query: 293 EVCGLKWSYDNRELASGGNDNRLFVWN 319
V S D++ + +G D + V+
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 3e-05
Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 6/128 (4%)
Query: 289 GHKSEVCGLKWSYDNRELASGGNDNRLFVWN-----QHSTQPVLKYCEHTAAVKAIAWSP 343
H VC + S R + +GG + VW+ S L +++ P
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 344 HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQI 403
L+ G + T + L S + S +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 404 IVWRYPTM 411
T+
Sbjct: 168 WDLHNQTL 175
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 3e-04
Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 10/239 (4%)
Query: 180 VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS- 238
+ V + ++ L + VC+V +N H+ G G V++WD S
Sbjct: 23 MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISH 81
Query: 239 ----RCKRVRTMEGHRLRVGALAWSSS--LLSSGSRDKSILQRDIRAQEDFVSKLSGHKS 292
+ + L G ++ D+ A + +
Sbjct: 82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA 141
Query: 293 EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASG 352
C + ++ + Q +++ + + + L +G
Sbjct: 142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201
Query: 353 GGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411
G D +R W+ L D SQ+ +L + L S +++ P
Sbjct: 202 G--LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 4e-04
Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 6/118 (5%)
Query: 289 GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGL 348
S++ L + LA G + + V + + + H + V ++ ++
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYC-GKW 279
Query: 349 LASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406
S G D + W T + S V + S + +V+ G + V+
Sbjct: 280 FVSTG--KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVT--GSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.002
Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 10/121 (8%)
Query: 297 LKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTA 356
+ D + + L + H V A+ S + +GG
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG--- 70
Query: 357 DRCIRFWNTTTN------THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410
C++ W+ + + L C++ + + + + L+ S I PT
Sbjct: 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130
Query: 411 M 411
Sbjct: 131 P 131
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.2 bits (115), Expect = 4e-07
Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 2/133 (1%)
Query: 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVRTM 246
L +K + + + + + + + + + + +
Sbjct: 154 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISW 213
Query: 247 EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306
+ L+++GS D +I ++ + L+ HK V L W + L
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-L 272
Query: 307 ASGGNDNRLFVWN 319
S G D + WN
Sbjct: 273 VSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.2 bits (102), Expect = 1e-05
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE-HTAAVKAIAWSPHLHGL 348
+E + + +A+G D +F+++ ++K H V + W
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PST 271
Query: 349 LASGGGTADRCIRFWN 364
L S G AD CI+ WN
Sbjct: 272 LVSSG--ADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.5 bits (95), Expect = 1e-04
Identities = 18/133 (13%), Positives = 43/133 (32%), Gaps = 11/133 (8%)
Query: 280 QEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAI 339
++ + +SGH + L + L SG D R+ W+ S +H+ + ++
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSL 52
Query: 340 AWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS 399
S +S + + + + N ++L+ ++
Sbjct: 53 DNSK--AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 110
Query: 400 QNQIIVWRYPTMS 412
+ I R +
Sbjct: 111 GDIIKSVRLNSPG 123
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (88), Expect = 8e-04
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 241 KRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS 300
+ ++T+ GH + AL + L SGS D I++ S H + + L S
Sbjct: 4 EVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSS------SMHQDHSNLIVSLDNS 55
Query: 301 YDNRELASGGNDNRLFVWNQHSTQPVLKYCEH 332
+ +D
Sbjct: 56 KAQEYSSISWDDTLKVNGITKHEFGSQPKVAS 87
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.2 bits (116), Expect = 4e-07
Identities = 21/303 (6%), Positives = 59/303 (19%), Gaps = 30/303 (9%)
Query: 133 DDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDF-YLNLVDWSSHNVLAVGLGNCVYL 191
+ S + S L L S + V +
Sbjct: 41 YFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEV 100
Query: 192 WNACSSKVTKLCDLG------IDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVR 244
++ + +L + V +G + L +
Sbjct: 101 FDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ 160
Query: 245 TMEGHRLRVGALAWSSSLLSSGSRDKSILQRD-----IRAQEDFVSKLSGHKSEVCGLKW 299
+ +++ GS S+ D A +
Sbjct: 161 LTKSAS-CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQA 219
Query: 300 SYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLA--------- 350
+Y + + + + + KA + ++A
Sbjct: 220 NYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM 279
Query: 351 -------SGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQI 403
A + + G ++ +++ + +
Sbjct: 280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVL 339
Query: 404 IVW 406
++
Sbjct: 340 DIY 342
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.4 bits (113), Expect = 6e-07
Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 1/126 (0%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE-HTAAVKAIAWSPHL 345
GH + L S D + L S + + W+ + + + H + I +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67
Query: 346 HGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405
S + ++ SQ L S + + V+
Sbjct: 68 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127
Query: 406 WRYPTM 411
+ +
Sbjct: 128 GKLTEV 133
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.0 bits (91), Expect = 4e-04
Identities = 23/147 (15%), Positives = 42/147 (28%), Gaps = 2/147 (1%)
Query: 241 KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLK 298
+ GH + AL+ S L S + I DI H + + G+K
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 299 WSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR 358
+ +D+ V S K + + + + + G +A
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 359 CIRFWNTTTNTHLSCMDTGSQVCNLVW 385
I T +S + + N
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQ 149
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 2e-06
Identities = 22/180 (12%), Positives = 46/180 (25%), Gaps = 24/180 (13%)
Query: 243 VRTMEGHRLRVGALAWSSSLLSSGSRDKSI-----LQRDIRAQEDFVSKLSGHKSEV--- 294
+ H + +++ +S S S D + D +D HKS +
Sbjct: 7 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 295 ----CGLKWSYDNRELASGGNDNRLFVWN----------QHSTQPVLKYCEHTAAVKAIA 340
+ +++ +A+ L + +L + A+
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126
Query: 341 WSPHLHGLLAS--GGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY 398
W LL+ W S T + L V ++ +
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.001
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 10/113 (8%)
Query: 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGS 267
V S+ + + L GK++ WD +R+ T+ H + ++ G
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320
D++ K + N L D + + +
Sbjct: 349 SLAEPGVFDVKF----------LKKGWRSGMGADLNESLCCVCLDRSIRWFRE 391
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.8 bits (83), Expect = 0.004
Identities = 32/201 (15%), Positives = 56/201 (27%), Gaps = 32/201 (15%)
Query: 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWD--------ASRCKRVRTMEGHRLRVGALAWS 259
SV + +A G ++G VQI + + + +R +
Sbjct: 184 SQFATSVDI-SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242
Query: 260 SSLLSSGSRDKSIL---------------QRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR 304
SLL+ S H S V L ++
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302
Query: 305 ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVK----AIAWSPHLHGLLASGGGTADRCI 360
L S G D +L W+ + + + H ++ +A H LA G +
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD-SLAEPG---VFDV 358
Query: 361 RFWNTTTNTHLSCMDTGSQVC 381
+F + + S C
Sbjct: 359 KFLKKGWRSGMGADLNESLCC 379
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 46.3 bits (108), Expect = 4e-06
Identities = 19/211 (9%), Positives = 52/211 (24%), Gaps = 17/211 (8%)
Query: 220 NTHLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWS---SSLLSSGSRDKSILQR 275
+ ++ V + + D + ++ + G + + + I
Sbjct: 8 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 67
Query: 276 DIRAQE-----DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY- 329
D+ + + S + S D +E+ + N + + P L+
Sbjct: 68 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVF 127
Query: 330 ---CEHTAAVKAIAWSPHLHGLLASGGG----TADRCIRFWNTTTNTHLSCMDTGSQVCN 382
A P L+ + A I + T + + +
Sbjct: 128 STADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRK 187
Query: 383 LVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413
+ +V +++
Sbjct: 188 GYSAPDVLYFWPHQSPRHEFSMLYTIARFKD 218
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 22/200 (11%), Positives = 56/200 (28%), Gaps = 5/200 (2%)
Query: 51 PSRSSSNFDLFNISQPSPNSPAVTDSHKDDNSGTYTALLRAALFGPETPEKKDVLGPPSG 110
P R+ + + + + T AL P
Sbjct: 137 PVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNR--KGYSAPDV 194
Query: 111 RNIFRFKSETRRSLHSLSPFGFDDDVASGVSHSPVKAPRKV-PRSPYKILDAPALQDDFY 169
+ +S + F DD + + V ++ A + Y
Sbjct: 195 LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY 254
Query: 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH 229
+ G+ N + ++ K+ K +L + V + + L +G +
Sbjct: 255 FTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLGGTF 312
Query: 230 GKVQIWDASRCKRVRTMEGH 249
+ +++ ++V+ ++
Sbjct: 313 NDLAVFNPDTLEKVKNIKLP 332
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (104), Expect = 2e-05
Identities = 20/204 (9%), Positives = 57/204 (27%), Gaps = 19/204 (9%)
Query: 230 GKVQIWDASRCKRVRTMEGHRLRVGALAWSSS--LLSSGSRDKSILQRDIRAQE----DF 283
G++ + D S + ++ V S+S L RD + D+ +E
Sbjct: 42 GQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE 100
Query: 284 VSKLSGHKSEVCGLKWSYDNREL-ASGGNDNRLFVWNQHSTQPVLKYCEHTAAV------ 336
+ S +S ++++ A + + + + +P
Sbjct: 101 IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH 160
Query: 337 -----KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNE 391
AI S + + + T + + N + + + + +
Sbjct: 161 PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY 220
Query: 392 LVSTHGYSQNQIIVWRYPTMSKVL 415
++ +++ +
Sbjct: 221 FITAANARNKLVVIDTKEGKLVAI 244
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.4 bits (95), Expect = 2e-04
Identities = 15/123 (12%), Positives = 37/123 (30%), Gaps = 14/123 (11%)
Query: 206 GIDDSVCSVGWANRNTHLAVG-------TSHGKVQIWDASRCKRVRTMEGHRLRVGALAW 258
I S R+ G D + + +E L
Sbjct: 225 LIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH 284
Query: 259 SS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316
+ +L+ D++ + K++ K+ + L+ S D + + +D +++
Sbjct: 285 GEFAAYYQGAPEKGVLLKYDVKTR-----KVTEVKNNLTDLRLSADRKTVMVRKDDGKIY 339
Query: 317 VWN 319
+
Sbjct: 340 TFP 342
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 2e-04
Identities = 18/138 (13%), Positives = 41/138 (29%), Gaps = 16/138 (11%)
Query: 288 SGHKSEVCGLKWSYDNRELASGGNDN---RLFVWNQHSTQPVLKYCEH-TAAVKAIAWSP 343
S ++ L + +A + R PV+++ H ++ V + +SP
Sbjct: 14 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73
Query: 344 HLHG-LLASGGGTADRCIRFWNTTTNTHLSCMDT---------GSQVCNLVWSKNVNELV 393
L SG + W T + + ++ + ++ W L
Sbjct: 74 IKGSQYLCSGD--ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 131
Query: 394 STHGYSQNQIIVWRYPTM 411
N + + +
Sbjct: 132 VVGEGRDNFGVFISWDSG 149
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 3e-04
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 299 WSYDNRELASGGNDNRLFVWNQHSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTA 356
D+++ A+ G D + VW+ +++ V K+ + + + +G + S
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS--L 316
Query: 357 DRCIRFWN 364
D + F+
Sbjct: 317 DGTLNFYE 324
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.9 bits (92), Expect = 4e-04
Identities = 25/178 (14%), Positives = 53/178 (29%), Gaps = 9/178 (5%)
Query: 216 WANRNTHLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWSSSLLSSGSRDKSILQ 274
N G++ + D K V+ ++ G+ + + ++ S L RD I
Sbjct: 28 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDM 87
Query: 275 RDIRAQED----FVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHSTQPVLKY 329
D+ A+E + +S Y++R +G + + + + +P
Sbjct: 88 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 147
Query: 330 CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSK 387
V + P + F T + + NL +
Sbjct: 148 STRGMTVDTQTYHPEPRVAAIIA---SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS 202
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.4 bits (90), Expect = 5e-04
Identities = 15/128 (11%), Positives = 40/128 (31%), Gaps = 2/128 (1%)
Query: 132 FDDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYL 191
D+ + + ++ D + + A G N +
Sbjct: 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLES 264
Query: 192 WNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL 251
++ + K + + S SV + + + +G + G + +DA ++ ++
Sbjct: 265 FDLEKNASIKR--VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322
Query: 252 RVGALAWS 259
+LA
Sbjct: 323 ASMSLASV 330
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.9 bits (86), Expect = 0.002
Identities = 7/86 (8%), Positives = 21/86 (24%), Gaps = 4/86 (4%)
Query: 306 LASGGNDNRLFVWNQHSTQPV--LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363
+ + ++L V + + + +P A+ +
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK--SESLVKI 61
Query: 364 NTTTNTHLSCMDTGSQVCNLVWSKNV 389
+ T L +D + +
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGA 87
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.7 bits (88), Expect = 7e-04
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 294 VCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353
L + ++ N ++ S Y EH+ SP + +
Sbjct: 20 AVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS--- 75
Query: 354 GTADRCIRFWNTTTNTHLSCM 374
G +R W+TT TH+
Sbjct: 76 GDVHGNVRIWDTTQTTHILKT 96
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.4 bits (82), Expect = 0.004
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHT-AAVKAIAWSPHLHGL 348
H V GL WS D ++AS D + +WN + + T + + L
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296
Query: 349 LASGGGTADRCIRFWN 364
++ +A+ I F N
Sbjct: 297 VS---ISANGFINFVN 309
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 415 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.93 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.93 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.91 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.89 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.89 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.88 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.84 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.79 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.77 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.77 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.75 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.71 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.71 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.68 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.67 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.6 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.56 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.54 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.47 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.39 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.32 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.22 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.18 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.15 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.12 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.1 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.08 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.05 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.01 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.99 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.97 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.95 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.85 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.81 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.69 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.66 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.61 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.55 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.55 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.54 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.51 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.45 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.4 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.29 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.17 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.99 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.98 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.77 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.43 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.4 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.29 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.24 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.21 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.07 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.06 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.99 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.91 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.88 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.87 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.79 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 96.73 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.62 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.54 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.5 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.46 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.74 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.5 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.11 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.69 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.23 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 93.39 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.13 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 90.47 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 89.63 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 88.32 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 86.16 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 83.97 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 81.86 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.1e-35 Score=275.94 Aligned_cols=237 Identities=19% Similarity=0.288 Sum_probs=209.3
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee--EEe
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV--RTM 246 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~--~~l 246 (415)
..+++++| ++.|+++.++.|++|++.+.+....+. +|.+.|++++|+|+|++||+|+.||.|+|||+.+++.. ..+
T Consensus 20 ~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~-~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~ 98 (311)
T d1nr0a1 20 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI 98 (311)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE
T ss_pred eEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEc-CCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccc
Confidence 34668888 888999999999999999998888875 89999999999999999999999999999999877543 567
Q ss_pred cCCCccEEEEEee--CCEEEEEeC--CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCE-EEEEeCCCcEEEEECC
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSR--DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWNQH 321 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~-lasg~~dg~I~iwd~~ 321 (415)
..|...|.+++|+ +.+|++++. ++.+++|++.+.. ....+.+|...|.+++|+|++++ |++|+.|+.|++||++
T Consensus 99 ~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~-~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~ 177 (311)
T d1nr0a1 99 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 177 (311)
T ss_dssp ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT
T ss_pred ccccCcccccccccccccccccccccccccccccccccc-ccccccccccccccccccccceeeeccccccccccccccc
Confidence 8899999999999 467888875 4669999999876 56778899999999999999885 8889999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--------CCCCEEEEEECCCCCeEE
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--------TGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--------~~~~V~~l~~s~~~~~l~ 393 (415)
+++....+..|...|.+++|+|++. ++++++ .|+.|++||+.++..+..+. |...|.+++|+|++++|+
T Consensus 178 ~~~~~~~~~~~~~~i~~v~~~p~~~-~l~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~ 254 (311)
T d1nr0a1 178 PFKFKSTFGEHTKFVHSVRYNPDGS-LFASTG--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 254 (311)
T ss_dssp TBEEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred ccccccccccccccccccccCcccc-cccccc--ccccccccccccccccccccccccccccccccccccccCCCCCEEE
Confidence 9999999999999999999999987 666666 79999999999998887764 456799999999999999
Q ss_pred EEEecCCCcEEEEECCCCcc
Q 014934 394 STHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s~~~ 413 (415)
+ |+.||.|+|||+.+++.
T Consensus 255 t--gs~Dg~v~iwd~~t~~~ 272 (311)
T d1nr0a1 255 S--ASADKTIKIWNVATLKV 272 (311)
T ss_dssp E--EETTSEEEEEETTTTEE
T ss_pred E--EeCCCeEEEEECCCCcE
Confidence 8 77899999999988764
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.6e-34 Score=270.76 Aligned_cols=243 Identities=21% Similarity=0.254 Sum_probs=213.4
Q ss_pred CCCcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeE---Ee-EecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC
Q 014934 165 QDDFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVT---KL-CDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 165 ~~~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~---~~-~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~ 239 (415)
.....|.+++|+| +.+|++|.|+.|+|||+.++... .. ...+|.+.|.+++|+|+|++|++|+.||.|++||+..
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~ 128 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccc
Confidence 3445689999999 88999999999999999765422 22 2237888999999999999999999999999999864
Q ss_pred --CeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcE
Q 014934 240 --CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRL 315 (415)
Q Consensus 240 --~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I 315 (415)
.+....+..|...+.+++|+ +.++++++.|+.|++||+++.. ......+|...|.+++|++++..+++|+.|+.|
T Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v 207 (337)
T d1gxra_ 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207 (337)
T ss_dssp C--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 45667788899999999998 4799999999999999999876 577788899999999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
++||+++++.+..+ .|...|.+++|+|++. ++++++ .|+.|++||+.+++......+...|.+++|+|++++|++
T Consensus 208 ~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s- 282 (337)
T d1gxra_ 208 RSWDLREGRQLQQH-DFTSQIFSLGYCPTGE-WLAVGM--ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVS- 282 (337)
T ss_dssp EEEETTTTEEEEEE-ECSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEE-
T ss_pred cccccccceeeccc-ccccceEEEEEccccc-ccceec--cccccccccccccccccccccccccceEEECCCCCEEEE-
Confidence 99999999988777 6889999999999987 566665 799999999999998888788899999999999999998
Q ss_pred EecCCCcEEEEECCCCccc
Q 014934 396 HGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 396 ~g~~dg~I~vw~~~s~~~l 414 (415)
|+.||.|++||+++++.+
T Consensus 283 -~s~Dg~i~iwd~~~~~~~ 300 (337)
T d1gxra_ 283 -TGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp -EETTSEEEEEETTTCCEE
T ss_pred -EeCCCeEEEEECCCCCEE
Confidence 778999999999988754
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.9e-33 Score=265.13 Aligned_cols=234 Identities=19% Similarity=0.278 Sum_probs=200.6
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEe-cCCCCCeEEEEEcCCCCeEEEEEC--CCcEEEEECCCCee
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCD-LGIDDSVCSVGWANRNTHLAVGTS--HGKVQIWDASRCKR 242 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~-~~~~~~V~~v~~sp~g~~la~g~~--dg~V~iwd~~~~~~ 242 (415)
..|++++|+| +++||+| .|+.|+|||+.+++...... ..|.+.|.+++|+|++++|++++. +..++||++++++.
T Consensus 59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~ 138 (311)
T d1nr0a1 59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138 (311)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred CCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccc
Confidence 3599999999 7888877 68999999998876543222 278899999999999999999986 45699999999999
Q ss_pred eEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 014934 243 VRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd 319 (415)
+..+.+|...|.+++|++ ..|++|+.||.|++||+++.. ....+..|...|+++.|+|++++|++|+.|+.|++||
T Consensus 139 ~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d 217 (311)
T d1nr0a1 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 217 (311)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cccccccccccccccccccceeeecccccccccccccccccc-cccccccccccccccccCccccccccccccccccccc
Confidence 999999999999999984 368899999999999999876 5778889999999999999999999999999999999
Q ss_pred CCCCceeEEec-------cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCC----CEEEEEECCC
Q 014934 320 QHSTQPVLKYC-------EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS----QVCNLVWSKN 388 (415)
Q Consensus 320 ~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~----~V~~l~~s~~ 388 (415)
+.++..+..+. +|.+.|.+++|+|+++ +|++|+ .|+.|+|||+.+++++..+..+. .+.++.|++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~-~l~tgs--~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~- 293 (311)
T d1nr0a1 218 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASAS--ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK- 293 (311)
T ss_dssp TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEE--TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS-
T ss_pred cccccccccccccccccccccccccccccCCCCC-EEEEEe--CCCeEEEEECCCCcEEEEEECCCCccceEEEEEecC-
Confidence 99988877664 5889999999999997 666776 79999999999999999887443 456666654
Q ss_pred CCeEEEEEecCCCcEEEEECC
Q 014934 389 VNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+.|++ ++.||.|++||.+
T Consensus 294 -~~l~s--~s~dG~i~~wd~d 311 (311)
T d1nr0a1 294 -QALVS--ISANGFINFVNPE 311 (311)
T ss_dssp -SCEEE--EETTCCEEEEETT
T ss_pred -CEEEE--EECCCEEEEEeCC
Confidence 56777 6689999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-32 Score=261.22 Aligned_cols=234 Identities=17% Similarity=0.253 Sum_probs=205.6
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
+-.|.+++|+| +++|+++ .|+.|++||+..........+ .|...|.++.|+|++.++++++.++.|++||+.+++..
T Consensus 97 ~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~ 176 (337)
T d1gxra_ 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV 176 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44799999999 6777766 689999999876543322222 77889999999999999999999999999999999999
Q ss_pred EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
....+|...|.+++|+ +..+++|+.|+.|++||++++. .+.. ..|...|.+++|+|++++|++|+.|+.|++||++
T Consensus 177 ~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~-~~~~-~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~ 254 (337)
T d1gxra_ 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ccccccccccccccccccccccccccccccccccccccce-eecc-cccccceEEEEEcccccccceecccccccccccc
Confidence 9999999999999998 5799999999999999999876 3443 3588899999999999999999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCC
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN 401 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg 401 (415)
+++.. ....|...|.+++|+|+++ +|++++ .|+.|++||+.+++.+..+.+...|.+++|+|++++|++ |+.||
T Consensus 255 ~~~~~-~~~~~~~~i~~v~~s~~g~-~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t--~s~D~ 328 (337)
T d1gxra_ 255 KPDKY-QLHLHESCVLSLKFAYCGK-WFVSTG--KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVT--GSGDK 328 (337)
T ss_dssp SSCEE-EECCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEE--EETTS
T ss_pred ccccc-cccccccccceEEECCCCC-EEEEEe--CCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEE--EeCCC
Confidence 88765 4558999999999999997 666666 899999999999999999999999999999999999998 77899
Q ss_pred cEEEEEC
Q 014934 402 QIIVWRY 408 (415)
Q Consensus 402 ~I~vw~~ 408 (415)
.|+|||+
T Consensus 329 ~I~vWdl 335 (337)
T d1gxra_ 329 KATVYEV 335 (337)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 9999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.7e-32 Score=254.97 Aligned_cols=233 Identities=16% Similarity=0.305 Sum_probs=198.1
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC----e
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC----K 241 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~----~ 241 (415)
-.|++++|+| +.+|++| .|+.|+|||..+++....+. .|...|.+++|+|++.++++|+.|+.+.+|+.... +
T Consensus 56 ~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~ 134 (340)
T d1tbga_ 56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR 134 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEE-CSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCC
T ss_pred CCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEe-cccccEEeeEeeccceeeeeecccceeecccccccccccc
Confidence 4599999999 7777777 58999999999999888776 78899999999999999999999999999997542 2
Q ss_pred eeEEecCCC-----------------------------------------ccEEEEEee--CCEEEEEeCCCcEEEEECC
Q 014934 242 RVRTMEGHR-----------------------------------------LRVGALAWS--SSLLSSGSRDKSILQRDIR 278 (415)
Q Consensus 242 ~~~~l~~h~-----------------------------------------~~V~~l~~~--~~~l~sgs~dg~I~iwd~~ 278 (415)
....+.+|. ..+....+. ..++++|+.|+.|++||++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~ 214 (340)
T d1tbga_ 135 VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214 (340)
T ss_dssp EEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred cceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECC
Confidence 222232222 233333443 3678999999999999999
Q ss_pred CCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec--cCCCcEEEEEEcCCCCcEEEEEcCCC
Q 014934 279 AQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTA 356 (415)
Q Consensus 279 ~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~llasggg~~ 356 (415)
+.. .+..+.+|...|.+++|+|++++|++|+.|+.|++||+.....+..+. .|...|.+++|+|++. +|++|+ .
T Consensus 215 ~~~-~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~--~ 290 (340)
T d1tbga_ 215 EGM-CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGY--D 290 (340)
T ss_dssp TTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC-EEEEEE--T
T ss_pred CCc-EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCC-EEEEEE--C
Confidence 887 678889999999999999999999999999999999999988777663 5677899999999987 666666 7
Q ss_pred CCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 357 DRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 357 d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
|+.|++||+.+++++..+. |...|.+++|+|++++|++ |+.||.|+|||
T Consensus 291 dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s--~s~Dg~v~iWd 340 (340)
T d1tbga_ 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT--GSWDSFLKIWN 340 (340)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE--EETTSCEEEEC
T ss_pred CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE--EccCCEEEEeC
Confidence 9999999999999999887 6789999999999999998 77899999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-32 Score=253.53 Aligned_cols=233 Identities=18% Similarity=0.350 Sum_probs=202.8
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEE-------------------------------
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSV------------------------------- 214 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v------------------------------- 214 (415)
-.|++|+|+| +++|++| .|+.|+|||+.+++....+. +|...|.++
T Consensus 18 ~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (317)
T d1vyhc1 18 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT 96 (317)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCCCcEEEEeeecccccccccccccccccccccccccccc
Confidence 4699999999 7777776 58999999999887666553 444455544
Q ss_pred -----------EEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC
Q 014934 215 -----------GWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE 281 (415)
Q Consensus 215 -----------~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~ 281 (415)
.|+++++.+++++.|+.+++||+.+++.+..+.+|...+.+++|+ +.+|++|+.|+.|++|++....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~ 176 (317)
T d1vyhc1 97 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 176 (317)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce
Confidence 455556667888889999999999999999999999999999998 5899999999999999999887
Q ss_pred ccEEEeccccCCeEEEEEeCCC--------------------CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEE
Q 014934 282 DFVSKLSGHKSEVCGLKWSYDN--------------------RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW 341 (415)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~spdg--------------------~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 341 (415)
....+.+|...+.+++|+|++ .++++|+.|+.|++||+.+++++.++.+|...|.+++|
T Consensus 177 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~ 255 (317)
T d1vyhc1 177 -CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255 (317)
T ss_dssp -EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred -eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEE
Confidence 577888999999999998753 47899999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
+|+++ +|++++ .|+.|++||+.+++++..+. |...|++++|+|++++|++ |+.||+|+|||
T Consensus 256 ~~~~~-~l~s~~--~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s--~s~Dg~i~iWd 317 (317)
T d1vyhc1 256 HSGGK-FILSCA--DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT--GSVDQTVKVWE 317 (317)
T ss_dssp CSSSS-CEEEEE--TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEE--EETTSEEEEEC
T ss_pred CCCCC-EEEEEE--CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE--EeCCCeEEEeC
Confidence 99987 556665 79999999999999998887 6789999999999999998 77899999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.1e-32 Score=263.54 Aligned_cols=236 Identities=12% Similarity=0.219 Sum_probs=198.9
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee--e
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR--V 243 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~--~ 243 (415)
.|+|++|+| +.+||++ .++.|+||+..+++......+ +|.+.|++++|+|++++|++|+.||.|+|||+.++.. .
T Consensus 9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~ 88 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 88 (371)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc
Confidence 388999999 7788877 468999999988875444433 8999999999999999999999999999999987653 4
Q ss_pred EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc---EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 014934 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF---VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iw 318 (415)
..+.+|...|.+++|+ ++.|++|+.|++|++|++...... ......|...|.+++|+|++++||+|+.|+.|++|
T Consensus 89 ~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~ 168 (371)
T d1k8kc_ 89 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168 (371)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEE
Confidence 4567889999999998 579999999999999998776532 34456789999999999999999999999999999
Q ss_pred ECCCC------------------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCC
Q 014934 319 NQHST------------------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQ 379 (415)
Q Consensus 319 d~~~~------------------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~ 379 (415)
|.... ..+.....|...|.+++|+|+++ .|++++ .|+.|++||+.+++.+..+. +..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~ 245 (371)
T d1k8kc_ 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVS--HDSTVCLADADKKMAVATLASETLP 245 (371)
T ss_dssp ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEE--TTTEEEEEEGGGTTEEEEEECSSCC
T ss_pred eeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc-cccccc--cCCcceEEeeecccceeeeeccccc
Confidence 97642 34566678999999999999987 667776 79999999999999988887 5678
Q ss_pred EEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 380 V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
|.+++|+++++.|++ | .|+.+.+|.+..
T Consensus 246 v~s~~fs~d~~~la~--g-~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 246 LLAVTFITESSLVAA--G-HDCFPVLFTYDS 273 (371)
T ss_dssp EEEEEEEETTEEEEE--E-TTSSCEEEEEET
T ss_pred ceeeeecCCCCEEEE--E-cCCceEEEEeeC
Confidence 999999999987776 5 477777776654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-31 Score=255.32 Aligned_cols=242 Identities=20% Similarity=0.308 Sum_probs=199.5
Q ss_pred CcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEe-----------------cCCCCCeEEEEEcCCCCeEEEEEC
Q 014934 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCD-----------------LGIDDSVCSVGWANRNTHLAVGTS 228 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~-----------------~~~~~~V~~v~~sp~g~~la~g~~ 228 (415)
.-.|+||+|+| +++||+|.|+.|+|||+.+++....+. ..|...|++++|+|+|++|++|+.
T Consensus 62 ~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~ 141 (388)
T d1erja_ 62 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 141 (388)
T ss_dssp SSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccc
Confidence 34699999999 789999999999999999988765542 145677999999999999999999
Q ss_pred CCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEE
Q 014934 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306 (415)
Q Consensus 229 dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 306 (415)
||.|++||...++.+..+.+|...|.+++|+ +..+++|+.++.|++||.+... .......+...++...+.+++++|
T Consensus 142 dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 220 (388)
T d1erja_ 142 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLTLSIEDGVTTVAVSPGDGKYI 220 (388)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEECSSCEEEEEECSTTCCEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccc-cccccccccccccccccCCCCCeE
Confidence 9999999999999999999999999999998 4789999999999999999876 344444444444444444589999
Q ss_pred EEEeCCCcEEEEECCCCceeEEe-------ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE-------
Q 014934 307 ASGGNDNRLFVWNQHSTQPVLKY-------CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS------- 372 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~~~~~-------~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~------- 372 (415)
++|+.|+.|++||..++..+..+ .+|...|.+++|+|++. +|++++ .|+.|++||+.++....
T Consensus 221 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~ 297 (388)
T d1erja_ 221 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGS--LDRSVKLWNLQNANNKSDSKTPNS 297 (388)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEEC--------------
T ss_pred EEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC-EEEEEE--CCCcEEEEeccCCccccccccccc
Confidence 99999999999999998776665 35889999999999987 666666 79999999998764322
Q ss_pred ------EeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 373 ------CMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 373 ------~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
...+...|.+++|++++++|++ |+.||.|++||+.+++++
T Consensus 298 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s--g~~dg~i~vwd~~~~~~~ 343 (388)
T d1erja_ 298 GTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPL 343 (388)
T ss_dssp -CEEEEEECCSSCEEEEEECGGGCEEEE--EETTSEEEEEETTTCCEE
T ss_pred cceeeecccccceEEEEEECCCCCEEEE--EeCCCEEEEEECCCCcEE
Confidence 2235678999999999999998 789999999999988754
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-30 Score=249.66 Aligned_cols=240 Identities=20% Similarity=0.364 Sum_probs=198.6
Q ss_pred CCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 165 QDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 165 ~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
..+..|++++|+| +++|++| .|+.|++|+...++...... +|...|.++.|++++..+++|+.+|.|++||..+...
T Consensus 119 ~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 197 (388)
T d1erja_ 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197 (388)
T ss_dssp CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCCCEEEEEECCCCCcceecccccccccccccccccccccc-cccccccccccccccccccccccceeeeeeecccccc
Confidence 3456799999999 6777766 68999999999998877765 7899999999999999999999999999999999888
Q ss_pred eEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccE------EEeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFV------SKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~------~~~~~h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
......+...+....+. +.+|++|+.||.|++||.++..... ....+|...|.+++|+|++++|++|+.|+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~ 277 (388)
T d1erja_ 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 277 (388)
T ss_dssp EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCc
Confidence 87777665554444433 5799999999999999999876321 123468899999999999999999999999
Q ss_pred EEEEECCCCc------------eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEE
Q 014934 315 LFVWNQHSTQ------------PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVC 381 (415)
Q Consensus 315 I~iwd~~~~~------------~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~ 381 (415)
|++||+.++. .......|...|.+++|+|+++ +|++|+ .|+.|++||+.+++++..+. |...|.
T Consensus 278 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~--~dg~i~vwd~~~~~~~~~l~~H~~~V~ 354 (388)
T d1erja_ 278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGS--KDRGVLFWDKKSGNPLLMLQGHRNSVI 354 (388)
T ss_dssp EEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence 9999997643 3445557899999999999987 666766 89999999999999999887 677899
Q ss_pred EEEE------CCCCCeEEEEEecCCCcEEEEECCC
Q 014934 382 NLVW------SKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 382 ~l~~------s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
++++ +|++++|++ |+.||.|+||+++.
T Consensus 355 ~~~~~~~~~~spd~~~l~s--~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 355 SVAVANGSSLGPEYNVFAT--GSGDCKARIWKYKK 387 (388)
T ss_dssp EEEECSSCTTCTTCEEEEE--EETTSEEEEEEEEE
T ss_pred EEEEecCcccCCCCCEEEE--EeCCCEEEEEeeee
Confidence 8875 678888988 77899999999854
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=1e-29 Score=235.90 Aligned_cols=236 Identities=15% Similarity=0.233 Sum_probs=183.9
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee--
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR-- 242 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~-- 242 (415)
.-.|++++|+| +++|++| .|+.|++||+.+++....+...|...|++++|+|+|.++ +++.|+.+++|+......
T Consensus 12 ~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~ 90 (299)
T d1nr0a2 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDS 90 (299)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCT
T ss_pred CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEeccCCccccc
Confidence 34699999999 6777766 689999999999998877755788999999999999754 567799999998642110
Q ss_pred -----------e--------------------EEec-------CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc
Q 014934 243 -----------V--------------------RTME-------GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED 282 (415)
Q Consensus 243 -----------~--------------------~~l~-------~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~ 282 (415)
+ ..+. .....+.+++|+ +.+|++|+.||.|++||+++...
T Consensus 91 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~ 170 (299)
T d1nr0a2 91 SKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV 170 (299)
T ss_dssp TSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 0000 122346667776 46899999999999999987763
Q ss_pred cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee---EEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCe
Q 014934 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV---LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC 359 (415)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~---~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~ 359 (415)
.......|...|.+++|+|++++|++++.|+.|++||+.++..+ ..+..|...|.+++|+|++. +|++|+ .|+.
T Consensus 171 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~sgs--~dg~ 247 (299)
T d1nr0a2 171 SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV-RLATGS--LDNS 247 (299)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS-EEEEEE--TTSC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ceEEEc--CCCE
Confidence 33455678999999999999999999999999999999877544 34567999999999999987 777776 8999
Q ss_pred EEEEECCCCcEEEEee----CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 360 IRFWNTTTNTHLSCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 360 I~iwd~~t~~~~~~~~----~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
|++||+.++.....+. +...|..+.| +++++|++ |+.|+.|++||++
T Consensus 248 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s--~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 248 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVS--AGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEE--EETTSCEEEEECC
T ss_pred EEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEE--EeCCCEEEEEecc
Confidence 9999999875433322 2345666655 56778888 6789999999986
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.5e-29 Score=243.39 Aligned_cols=241 Identities=17% Similarity=0.206 Sum_probs=192.8
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe---
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--- 241 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~--- 241 (415)
-.|++++|+| +++|+++ .|+.|+|||+.++.......+ +|...|++++|+|++++|++|+.||.|++|++....
T Consensus 52 ~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~ 131 (371)
T d1k8kc_ 52 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW 131 (371)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccc
Confidence 4699999999 6777765 679999999988876655544 678899999999999999999999999999986543
Q ss_pred -eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC-----------------ccEEEeccccCCeEEEEEeC
Q 014934 242 -RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE-----------------DFVSKLSGHKSEVCGLKWSY 301 (415)
Q Consensus 242 -~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-----------------~~~~~~~~h~~~V~~l~~sp 301 (415)
.......|...|.+++|+ +.+|++|+.|++|++||..... .......+|...|.+++|+|
T Consensus 132 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 211 (371)
T d1k8kc_ 132 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 211 (371)
T ss_dssp EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred cccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec
Confidence 234456799999999998 4799999999999999986432 23455678899999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC--CCcEEEE------
Q 014934 302 DNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT--TNTHLSC------ 373 (415)
Q Consensus 302 dg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~--t~~~~~~------ 373 (415)
++++||+++.|+.|++||+.+++.+..+..|..+|.+++|+|++. ++++| .|+.+++|... .+.....
T Consensus 212 ~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~-~la~g---~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (371)
T d1k8kc_ 212 NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS-LVAAG---HDCFPVLFTYDSAAGKLSFGGRLDVP 287 (371)
T ss_dssp SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTE-EEEEE---TTSSCEEEEEETTTTEEEECCCCCCC
T ss_pred ccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCC-EEEEE---cCCceEEEEeeCCCceEEEeeeecCc
Confidence 999999999999999999999999999999999999999999985 77776 47776665543 2221100
Q ss_pred --------------------------------e--eCCCCEEEEEECCCCC----eEEEEEecCCCcEEEEECCCCccc
Q 014934 374 --------------------------------M--DTGSQVCNLVWSKNVN----ELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 374 --------------------------------~--~~~~~V~~l~~s~~~~----~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+ .|.+.|+++++.+.+. .+++ ++.||.|+|||++++++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T--~g~Dg~v~iW~~~~~~~~ 364 (371)
T d1k8kc_ 288 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCT--TGMDGGMSIWDVRSLESA 364 (371)
T ss_dssp --------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEE--EETTSEEEEEEHHHHHHH
T ss_pred cccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEE--EcCCCeEEEEeCCcChhh
Confidence 0 0445789999877543 3555 678999999999876543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=8.8e-29 Score=228.14 Aligned_cols=204 Identities=23% Similarity=0.382 Sum_probs=184.6
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC-------------------------
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS------------------------- 260 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~------------------------- 260 (415)
+|.+.|++|+|+|++++||+|+.||+|+|||+.+++.+.++.+|...|.+++|++
T Consensus 15 GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (317)
T d1vyhc1 15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 94 (317)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999998888887752
Q ss_pred -------------------CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 261 -------------------SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 261 -------------------~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
+.+++++.|+.+++||++++. ....+.+|...+.+++|+|++++|++|+.|+.|++|++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~ 173 (317)
T d1vyhc1 95 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173 (317)
T ss_dssp ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cccccccccceeeeccCCCceEEeeccCcceeEeecccce-eeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeec
Confidence 247888999999999999887 577888999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCC-------------------cEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEE
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLH-------------------GLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVC 381 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~-------------------~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~ 381 (415)
+++.+..+.+|...+.+++|+|++. .++++++ .|+.|++||+.+++++..+. +...|.
T Consensus 174 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~~~~~~~v~ 251 (317)
T d1vyhc1 174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDNWVR 251 (317)
T ss_dssp TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred cceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc--CCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence 9999999999999999999998753 2566666 89999999999999988886 678899
Q ss_pred EEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 382 ~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+++|+|++++|++ |+.||.|+|||+.+++.+
T Consensus 252 ~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~ 282 (317)
T d1vyhc1 252 GVLFHSGGKFILS--CADDKTLRVWDYKNKRCM 282 (317)
T ss_dssp EEEECSSSSCEEE--EETTTEEEEECCTTSCCC
T ss_pred EEEECCCCCEEEE--EECCCeEEEEECCCCcEE
Confidence 9999999999998 778999999999987653
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.4e-28 Score=225.02 Aligned_cols=241 Identities=20% Similarity=0.376 Sum_probs=191.1
Q ss_pred CCceeccCCCCCCCcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEE
Q 014934 154 SPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQ 233 (415)
Q Consensus 154 ~p~~~ld~~~l~~~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~ 233 (415)
.+.++|..+. +..+.|++|+.+.+++++.|+.|+|||+.++++...+. +|...|.+++|+++ +|++|+.|+.++
T Consensus 7 ~~~~~l~GH~---~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~~~~--~l~s~s~D~~~~ 80 (342)
T d2ovrb2 7 KSPKVLKGHD---DHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMRDN--IIISGSTDRTLK 80 (342)
T ss_dssp CCCEEEECST---TSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECC-CCSSCEEEEEEETT--EEEEEETTSCEE
T ss_pred CcCEEECCcC---CceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCCCCEEEEEeCCC--ccccceeccccc
Confidence 3445666532 33356788875544445578999999999999888775 89999999999864 888888888777
Q ss_pred EEECCC--------------------------------------------------------------------------
Q 014934 234 IWDASR-------------------------------------------------------------------------- 239 (415)
Q Consensus 234 iwd~~~-------------------------------------------------------------------------- 239 (415)
+|+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 160 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 160 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence 776432
Q ss_pred ------CeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC
Q 014934 240 ------CKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN 313 (415)
Q Consensus 240 ------~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg 313 (415)
.+.+..+.+|...+..+.+++..|++|+.||.|++||++... .+..+.+|...|.++.++ +++|++|+.|+
T Consensus 161 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~ 237 (342)
T d2ovrb2 161 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGMELK--DNILVSGNADS 237 (342)
T ss_dssp EEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC-EEEEECCCCSCEEEEEEE--TTEEEEEETTS
T ss_pred EeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccce-eeeEecccccceeEEecC--CCEEEEEcCCC
Confidence 222233345666677777778899999999999999999887 678889999999988876 46999999999
Q ss_pred cEEEEECCCCceeEEecc---CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee------CCCCEEEEE
Q 014934 314 RLFVWNQHSTQPVLKYCE---HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD------TGSQVCNLV 384 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~---h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~------~~~~V~~l~ 384 (415)
.|++||+...+....+.. |...+.++.++++ ++++++ .||.|++||+++++++..+. +...|.+++
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~s--~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~ 312 (342)
T d2ovrb2 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSS--DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 312 (342)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS---EEEEEE--TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred EEEEEecccccccccccccceeeeceeecccCCC---eeEEEc--CCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEE
Confidence 999999999888777764 5677888888754 777777 89999999999999988774 345699999
Q ss_pred ECCCCCeEEEEEecCCCc----EEEEECCC
Q 014934 385 WSKNVNELVSTHGYSQNQ----IIVWRYPT 410 (415)
Q Consensus 385 ~s~~~~~l~s~~g~~dg~----I~vw~~~s 410 (415)
|+|++..|++ |+.||+ |++||+..
T Consensus 313 ~s~~~~~la~--g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 313 ASNTKLVCAV--GSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ECSSEEEEEE--ECSSSSSCCEEEEEECCC
T ss_pred ECCCCCEEEE--EeCCCCCeeEEEEEeCCC
Confidence 9999988888 777774 99999974
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3e-29 Score=237.18 Aligned_cols=235 Identities=16% Similarity=0.159 Sum_probs=187.4
Q ss_pred cceeEeecCC---CcEEEEE-cCCeEEEEECCCCCeEEeE-------ecCCCCCeEEEEEcCCCCeEEEEEC--CCcEEE
Q 014934 168 FYLNLVDWSS---HNVLAVG-LGNCVYLWNACSSKVTKLC-------DLGIDDSVCSVGWANRNTHLAVGTS--HGKVQI 234 (415)
Q Consensus 168 ~~i~~l~ws~---~~~la~~-~d~~V~iwd~~~~~~~~~~-------~~~~~~~V~~v~~sp~g~~la~g~~--dg~V~i 234 (415)
..+++++|+| +.+||+| .|++|+|||...++..... ...|.+.|.+++|+++|++|++++. ++.+.+
T Consensus 64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~ 143 (325)
T d1pgua1 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF 143 (325)
T ss_dssp SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEE
Confidence 4589999997 4588776 5899999998764422111 1157789999999999999988765 678999
Q ss_pred EECCCCeeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEE--EeccccCCeEEEEEeCC-CCEEEE
Q 014934 235 WDASRCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVS--KLSGHKSEVCGLKWSYD-NRELAS 308 (415)
Q Consensus 235 wd~~~~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~--~~~~h~~~V~~l~~spd-g~~las 308 (415)
|+..+++.+..+.+|...|.+++|++ .++++++.|+.|++||......... ....|...|.+++|+|+ +.+|++
T Consensus 144 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s 223 (325)
T d1pgua1 144 ISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT 223 (325)
T ss_dssp EETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred EeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccc
Confidence 99999999999999999999999983 4688999999999999987652222 23467788999999996 689999
Q ss_pred EeCCCcEEEEECCCCceeEEeccCCCcEEEEEEc---CCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC-CC----E
Q 014934 309 GGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS---PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQ----V 380 (415)
Q Consensus 309 g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s---p~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-~~----V 380 (415)
|+.|+.|++||+++++.+..+.+|...+..+.|+ |++. +|++++ .|+.|+|||+.+++++..+..+ .. .
T Consensus 224 ~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (325)
T d1pgua1 224 VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ-KFATVG--ADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300 (325)
T ss_dssp EETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSS-EEEEEE--TTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred cccccceeeeeeccccccccccccccccccceeeeeccCCC-EEEEEe--CCCeEEEEECCCCCEEEEEEecCCcccCeE
Confidence 9999999999999999999999888877666555 5665 666766 8999999999999999887632 22 3
Q ss_pred EEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 381 CNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 381 ~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
.++.|.+++ .|++ |+.||.|+|||+
T Consensus 301 ~~~~~~~~~-~l~s--~s~dg~i~vwdl 325 (325)
T d1pgua1 301 VGVVATGNG-RIIS--LSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEEETT-EEEE--EETTSCEEEEET
T ss_pred EEEEECCCC-EEEE--EECCCEEEEEEC
Confidence 345555444 5666 678999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=3e-28 Score=227.99 Aligned_cols=208 Identities=19% Similarity=0.363 Sum_probs=181.0
Q ss_pred EeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECC
Q 014934 201 KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIR 278 (415)
Q Consensus 201 ~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~ 278 (415)
+.+. +|.+.|++|+|+|++++||+|+.||.|+|||+.+++.+..+..|...|.+++|+ +.++++|+.|+.+.+|+..
T Consensus 49 ~tL~-GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~ 127 (340)
T d1tbga_ 49 RTLR-GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127 (340)
T ss_dssp EEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred EEEC-CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccc
Confidence 4444 899999999999999999999999999999999999999999999999999998 5799999999999999976
Q ss_pred CCCc---c-----------------------------------------EEEeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 279 AQED---F-----------------------------------------VSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 279 ~~~~---~-----------------------------------------~~~~~~h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
.... . ......+...+....+.+.+.++++|+.|+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 207 (340)
T d1tbga_ 128 TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS 207 (340)
T ss_dssp SSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred ccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCce
Confidence 4321 0 1112234456778888889999999999999
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee---CCCCEEEEEECCCCCe
Q 014934 315 LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---TGSQVCNLVWSKNVNE 391 (415)
Q Consensus 315 I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~---~~~~V~~l~~s~~~~~ 391 (415)
|++||+++++++..+.+|...|.+++|+|++. +|++++ .|+.|++||+.....+..+. +...|.+++|++++++
T Consensus 208 v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~-~l~s~s--~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 284 (340)
T d1tbga_ 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284 (340)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCE
T ss_pred EEEEECCCCcEEEEEeCCCCCeEEEEECCCCC-EEEEEe--CCCeEEEEeecccccccccccccccCceEEEEECCCCCE
Confidence 99999999999999999999999999999987 667776 79999999999998887764 4567999999999999
Q ss_pred EEEEEecCCCcEEEEECCCCccc
Q 014934 392 LVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
|++ |+.||.|++||+.+++.+
T Consensus 285 l~~--g~~dg~i~iwd~~~~~~~ 305 (340)
T d1tbga_ 285 LLA--GYDDFNCNVWDALKADRA 305 (340)
T ss_dssp EEE--EETTSCEEEEETTTCCEE
T ss_pred EEE--EECCCEEEEEECCCCcEE
Confidence 999 789999999999987653
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.5e-28 Score=229.75 Aligned_cols=239 Identities=16% Similarity=0.254 Sum_probs=187.4
Q ss_pred eeEeecCC-CcEEEEEcCCeEEE--EECCCCCeEEeEec-CC-CCCeEEEEEcC--CCCeEEEEECCCcEEEEECCCCee
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYL--WNACSSKVTKLCDL-GI-DDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~i--wd~~~~~~~~~~~~-~~-~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
..+++|+| ++.|+++.++.+.+ |+...........+ +| ...|++++|+| +|.+||+|+.||+|+|||+..++.
T Consensus 20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~ 99 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE 99 (325)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcc
Confidence 46788999 88888887766555 55433332222222 55 57899999998 578999999999999999865432
Q ss_pred --------eEEecCCCccEEEEEee--CCEEEEEe--CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCE-EEEE
Q 014934 243 --------VRTMEGHRLRVGALAWS--SSLLSSGS--RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASG 309 (415)
Q Consensus 243 --------~~~l~~h~~~V~~l~~~--~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~-lasg 309 (415)
...+..|.++|.+++|+ +..|++++ .++.+.+|+..++. .+..+.+|...|.+++|+|++.+ ++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 178 (325)
T d1pgua1 100 SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN-SLGEVSGHSQRINACHLKQSRPMRSMTV 178 (325)
T ss_dssp GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC-EEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred eeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccc-cceeeeecccccccccccccccceEEEe
Confidence 23345788999999998 46776665 47789999998876 67888999999999999998875 6789
Q ss_pred eCCCcEEEEECCCCceeEEec---cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEE
Q 014934 310 GNDNRLFVWNQHSTQPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVW 385 (415)
Q Consensus 310 ~~dg~I~iwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~ 385 (415)
+.|+.|++||....+....+. .|...|.+++|+|++..++++++ .|+.|++||+++++.+..+. +...+..+.|
T Consensus 179 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~--~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 256 (325)
T d1pgua1 179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG--SDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256 (325)
T ss_dssp ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE--TTCCEEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred ecccccccccccccccceecccccCCCCccEEeeeccccceeccccc--cccceeeeeecccccccccccccccccccee
Confidence 999999999998887666553 56778999999998777888887 89999999999999998886 3344443333
Q ss_pred C---CCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 386 S---KNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 386 s---~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+ +++++|++ ++.|+.|+|||+++.+.
T Consensus 257 s~~~~dg~~l~s--~s~D~~i~iwd~~~~~~ 285 (325)
T d1pgua1 257 ALSWLDSQKFAT--VGADATIRVWDVTTSKC 285 (325)
T ss_dssp EEEESSSSEEEE--EETTSEEEEEETTTTEE
T ss_pred eeeccCCCEEEE--EeCCCeEEEEECCCCCE
Confidence 3 57889988 77899999999998764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.2e-27 Score=222.58 Aligned_cols=234 Identities=20% Similarity=0.312 Sum_probs=178.5
Q ss_pred ceeEeecCCCcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 169 YLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
.++|++++. ++|++| .|+.|+|||..+++....+. +|.+.|++++|+++ .+|++|+.||.|++|+....+......
T Consensus 15 vitc~~~~~-~~l~tgs~Dg~i~vWd~~~~~~~~~l~-~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~ 91 (355)
T d1nexb2 15 VITCLQFED-NYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFE 91 (355)
T ss_dssp CEEEEEEET-TEEEEEETTTEEEEEETTTTEEEEEEE-CCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred cEEEEEECC-CEEEEEeCCCeEEEEECCCCcEEEEEE-CCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccc
Confidence 367888875 455555 68999999999999888876 89999999999985 589999999999999998766554443
Q ss_pred CCCcc--EEEEEee--CCEEEEEeCCCcEEEEEC----------------------------------------------
Q 014934 248 GHRLR--VGALAWS--SSLLSSGSRDKSILQRDI---------------------------------------------- 277 (415)
Q Consensus 248 ~h~~~--V~~l~~~--~~~l~sgs~dg~I~iwd~---------------------------------------------- 277 (415)
.+... +....+. +..+++++.|+.|++||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (355)
T d1nexb2 92 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171 (355)
T ss_dssp CCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEET
T ss_pred cccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccccc
Confidence 32222 2222222 234555555555555554
Q ss_pred -----------------CCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEE
Q 014934 278 -----------------RAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIA 340 (415)
Q Consensus 278 -----------------~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 340 (415)
+... .+....++...+.++.|+|++.++++++.|+.|++||+.++..+..+.+|...|.+++
T Consensus 172 ~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~ 250 (355)
T d1nexb2 172 NIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 250 (355)
T ss_dssp TEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEE
T ss_pred ceeeeecccceeeeeeccccc-ceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccc
Confidence 4333 3444556778889999999999999999999999999999999999999999999999
Q ss_pred EcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 341 ~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
|++. +|++++ .|+.|++||+.++.......+........++++++.|++ | .||.|+|||+++++.+
T Consensus 251 ~~~~---~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--g-~d~~i~vwd~~tg~~~ 316 (355)
T d1nexb2 251 LSDK---FLVSAA--ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVS--G-SENQFNIYNLRSGKLV 316 (355)
T ss_dssp ECSS---EEEEEC--TTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEE--E-ETTEEEEEETTTCCBC
T ss_pred cccc---eeeeee--cccccccccccccceecccccCCceEEEEEcCCCCEEEE--E-eCCEEEEEECCCCCEE
Confidence 9863 777776 899999999999887766655444444566777776665 4 5899999999987754
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=8.9e-28 Score=222.59 Aligned_cols=210 Identities=18% Similarity=0.246 Sum_probs=171.9
Q ss_pred CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec-CCCccEEEEEeeC-CEEEEEeCCCcEEE
Q 014934 197 SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWSS-SLLSSGSRDKSILQ 274 (415)
Q Consensus 197 ~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~~~~-~~l~sgs~dg~I~i 274 (415)
|++.+++. +|.+.|++++|+|+|++||+|+.||.|++||+.+++.+..+. +|...|.+++|++ ..+++++.|+.+++
T Consensus 2 g~~~~~~~-GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRY-GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV 80 (299)
T ss_dssp TEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred CccceEcC-CCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEE
Confidence 45566665 999999999999999999999999999999999999888874 6899999999984 46778889999999
Q ss_pred EECCCCCc-------------c-------------------EEE-------eccccCCeEEEEEeCCCCEEEEEeCCCcE
Q 014934 275 RDIRAQED-------------F-------------------VSK-------LSGHKSEVCGLKWSYDNRELASGGNDNRL 315 (415)
Q Consensus 275 wd~~~~~~-------------~-------------------~~~-------~~~h~~~V~~l~~spdg~~lasg~~dg~I 315 (415)
|+...... . +.. .......+.+++|+|++++|++|+.|+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 160 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV 160 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred eccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99754210 0 000 00123457889999999999999999999
Q ss_pred EEEECCCCceeE-EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee----CCCCEEEEEECCCCC
Q 014934 316 FVWNQHSTQPVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD----TGSQVCNLVWSKNVN 390 (415)
Q Consensus 316 ~iwd~~~~~~~~-~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~----~~~~V~~l~~s~~~~ 390 (415)
++||+++++... ....|...|.+++|+|++. +|++++ .|+.|++||+.++..+.... |...|.+++|+|+++
T Consensus 161 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 237 (299)
T d1nr0a2 161 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATD--QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237 (299)
T ss_dssp EEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEE--TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred cccccccccccccccccccccccccccccccc-cccccc--ccccccccccccccccccccccccccccccccccccccc
Confidence 999998876543 3447999999999999987 566665 79999999999887665443 567899999999999
Q ss_pred eEEEEEecCCCcEEEEECCCCc
Q 014934 391 ELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 391 ~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+|++ |+.||.|++||+.+..
T Consensus 238 ~l~s--gs~dg~i~iwd~~~~~ 257 (299)
T d1nr0a2 238 RLAT--GSLDNSVIVWNMNKPS 257 (299)
T ss_dssp EEEE--EETTSCEEEEETTCTT
T ss_pred ceEE--EcCCCEEEEEECCCCC
Confidence 9998 7889999999998764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.2e-26 Score=211.54 Aligned_cols=225 Identities=21% Similarity=0.413 Sum_probs=182.6
Q ss_pred cceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee----
Q 014934 168 FYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV---- 243 (415)
Q Consensus 168 ~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~---- 243 (415)
..|.|++|+.+.+++++.|+.|+|||+.++++...+. +|.+.|++++| ++++|++|+.||.|++|++..+...
T Consensus 16 ~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~-~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~ 92 (293)
T d1p22a2 16 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI 92 (293)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred CCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEe-cCCCCEeeeec--ccceeeccccccccccccccccccccccc
Confidence 3588999875444444578999999999999988886 89999999987 6789999999999999997543221
Q ss_pred ---------------------------------------EEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccE
Q 014934 244 ---------------------------------------RTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFV 284 (415)
Q Consensus 244 ---------------------------------------~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 284 (415)
..+..|...|..+.+.+..+++++.|+.|++||+++.+ .+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~-~~ 171 (293)
T d1p22a2 93 HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-FV 171 (293)
T ss_dssp CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-EE
T ss_pred ccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCc-EE
Confidence 12234666777788888899999999999999999887 57
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE
Q 014934 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 285 ~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd 364 (415)
..+.+|...|..+.++ +.+|++++.||.|++||+++.+.+..+.+|...+..+. +++. .|++++ .|+.|++||
T Consensus 172 ~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~sg~--~dg~i~iwd 244 (293)
T d1p22a2 172 RTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR--FDNK-RIVSGA--YDGKIKVWD 244 (293)
T ss_dssp EEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE--CCSS-EEEEEE--TTSCEEEEE
T ss_pred EEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeecc--ccce-EEEEEc--CCCEEEEEE
Confidence 7888898999888776 56899999999999999999999999999998887654 4444 677776 899999999
Q ss_pred CCC---------CcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 365 TTT---------NTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 365 ~~t---------~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
+.+ ..++..+. |...|++++|+ +.+|++ |+.||+|+|||
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s--~s~Dg~i~iWD 293 (293)
T d1p22a2 245 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVS--SSHDDTILIWD 293 (293)
T ss_dssp HHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEE--CCSSSEEEEEC
T ss_pred CCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEE--EecCCEEEEeC
Confidence 753 23455554 67789999995 567888 78999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.3e-26 Score=224.39 Aligned_cols=241 Identities=14% Similarity=0.200 Sum_probs=177.5
Q ss_pred cceeEeecCCCcEEEEEcCCeEEEEECCCCCeE-----EeEecCCCCCeEEEEE------cC-CCCeEEEEECCCcEEEE
Q 014934 168 FYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVT-----KLCDLGIDDSVCSVGW------AN-RNTHLAVGTSHGKVQIW 235 (415)
Q Consensus 168 ~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~-----~~~~~~~~~~V~~v~~------sp-~g~~la~g~~dg~V~iw 235 (415)
-.|.+++++++.++.++.|+.|+|||..+.+.. ......|...+..+.. .. ++.++++++.||.|++|
T Consensus 15 ~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w 94 (393)
T d1sq9a_ 15 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY 94 (393)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEE
T ss_pred CccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEE
Confidence 357888888877777778999999997665421 1111134443333222 11 34578899999999999
Q ss_pred ECCCCeee-----EEe-----cCCCccEEEEEee-------CCEEEEEeCCCcEEEEECCCCCc----------------
Q 014934 236 DASRCKRV-----RTM-----EGHRLRVGALAWS-------SSLLSSGSRDKSILQRDIRAQED---------------- 282 (415)
Q Consensus 236 d~~~~~~~-----~~l-----~~h~~~V~~l~~~-------~~~l~sgs~dg~I~iwd~~~~~~---------------- 282 (415)
++...... ... ..+...+..++|. ..++++++.||.|.+||+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 174 (393)
T d1sq9a_ 95 RITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ 174 (393)
T ss_dssp EEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEE
T ss_pred EccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecc
Confidence 97543211 111 1244567777776 25789999999999999853220
Q ss_pred -cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEe------ccCCCcEEEEEEcCCCCcEEEEEcCC
Q 014934 283 -FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY------CEHTAAVKAIAWSPHLHGLLASGGGT 355 (415)
Q Consensus 283 -~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~------~~h~~~V~~l~~sp~~~~llasggg~ 355 (415)
.......+...+.+++|+|++ +||+|+.|+.|+|||+.+++++..+ .+|...|.+|+|+|+++ +|++|+
T Consensus 175 ~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs-- 250 (393)
T d1sq9a_ 175 GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAH-- 250 (393)
T ss_dssp EEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEE--
T ss_pred cceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc-eeeeec--
Confidence 011122445668999999997 8999999999999999998877654 46899999999999997 677776
Q ss_pred CCC---eEEEEECCCCcEEEEee--------------CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 356 ADR---CIRFWNTTTNTHLSCMD--------------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 356 ~d~---~I~iwd~~t~~~~~~~~--------------~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
.|+ .|++||+.+++++..+. |...|++++|+|++++|++ |+.|++|+|||+.+++.+
T Consensus 251 ~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S--~s~D~~v~vWd~~~g~~~ 324 (393)
T d1sq9a_ 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS--AGWDGKLRFWDVKTKERI 324 (393)
T ss_dssp EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE--EETTSEEEEEETTTTEEE
T ss_pred CCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEE--ECCCCEEEEEECCCCCEE
Confidence 565 59999999999888773 5678999999999999998 789999999999987643
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.8e-26 Score=211.32 Aligned_cols=226 Identities=14% Similarity=0.227 Sum_probs=173.2
Q ss_pred cceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC-------
Q 014934 168 FYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC------- 240 (415)
Q Consensus 168 ~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~------- 240 (415)
-.|++++|++ +++++.|+.|++||..++. ..|...|.++.+++++ .+++++.|++|++|++...
T Consensus 14 ~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~------~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~~~~~ 84 (287)
T d1pgua2 14 KGITALTVNP--LISGSYDGRIMEWSSSSMH------QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPK 84 (287)
T ss_dssp SCEEEEETTT--TEEEETTSCEEETTTTEEE------CCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEE
T ss_pred CceEEEEECc--EEEEeCCCeEEEEECCCCC------CCCCCCEEEEEecCCC-eEEEEeecccccccccccccccccee
Confidence 4689999987 6666689999999986532 2678889999988654 5678888888888875421
Q ss_pred ---------------------------eeeEEecCCCccEEEEEeeCCEEEEEeCCC-cEEEEECCCCCccEEEeccccC
Q 014934 241 ---------------------------KRVRTMEGHRLRVGALAWSSSLLSSGSRDK-SILQRDIRAQEDFVSKLSGHKS 292 (415)
Q Consensus 241 ---------------------------~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~h~~ 292 (415)
+.+..+. +...+.++..++..+++++.++ .|++|++............|..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (287)
T d1pgua2 85 VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA 163 (287)
T ss_dssp EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS
T ss_pred eeeeccCCceEEEeecccceeeeccceeeeeecc-ccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCC
Confidence 1122221 2234555666677777777765 7999999766533333446788
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeE-EeccCCCcEEEEEEcCCC---------CcEEEEEcCCCCCeEEE
Q 014934 293 EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL-KYCEHTAAVKAIAWSPHL---------HGLLASGGGTADRCIRF 362 (415)
Q Consensus 293 ~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~-~~~~h~~~V~~l~~sp~~---------~~llasggg~~d~~I~i 362 (415)
.|.+++|+|++.+|++|+.||.|++||+.+++... .+..|...|.+++|+|.+ ..++++|+ .|+.|++
T Consensus 164 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs--~D~~i~i 241 (287)
T d1pgua2 164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS--LDTNIFI 241 (287)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE--TTSCEEE
T ss_pred ceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeec--CCCeEEE
Confidence 99999999999999999999999999999887654 466899999999999865 24788887 8999999
Q ss_pred EECCC-CcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 363 WNTTT-NTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 363 wd~~t-~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
||+.+ ++.+..+. |...|++++|++++ .|++ ++.|+.|++|++
T Consensus 242 w~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s--~g~D~~v~iW~i 286 (287)
T d1pgua2 242 YSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVS--SGADACIKRWNV 286 (287)
T ss_dssp EESSCTTCCEEETTSSTTCEEEEEEEETT-EEEE--EETTSCEEEEEE
T ss_pred EECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEE--EECCCeEEEEEE
Confidence 99977 44555443 67889999999986 4666 568999999986
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=8.3e-26 Score=210.53 Aligned_cols=210 Identities=22% Similarity=0.397 Sum_probs=169.4
Q ss_pred EECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCc
Q 014934 192 WNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKS 271 (415)
Q Consensus 192 wd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~ 271 (415)
|+....+...++. +|.+.|.+ +++++|++||+|+.||+|+|||+.+++++.++.+|...|.+++|++++|++|+.|+.
T Consensus 1 W~~~~~~~~~~l~-GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~ 78 (342)
T d2ovrb2 1 WRRGELKSPKVLK-GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRT 78 (342)
T ss_dssp HHHSCCCCCEEEE-CSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSC
T ss_pred CCCCCCCcCEEEC-CcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceeccc
Confidence 4444555666676 89988865 466789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCc---------------------------------------------------------------------
Q 014934 272 ILQRDIRAQED--------------------------------------------------------------------- 282 (415)
Q Consensus 272 I~iwd~~~~~~--------------------------------------------------------------------- 282 (415)
+++|+......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 158 (342)
T d2ovrb2 79 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM 158 (342)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred ccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCe
Confidence 99998754220
Q ss_pred ----------cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEE
Q 014934 283 ----------FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 283 ----------~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 352 (415)
.+..+.+|...+ ..+++++.+|++|+.||.|++||++.++++..+..|...|.+++++++ +|+++
T Consensus 159 i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~ 233 (342)
T d2ovrb2 159 VKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSG 233 (342)
T ss_dssp EEEEEGGGTEEEEEECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETT---EEEEE
T ss_pred EEEeecccceeeEEEcCccccc--ccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCC---EEEEE
Confidence 011122333333 344557889999999999999999999999999999999999988864 77777
Q ss_pred cCCCCCeEEEEECCCCcEEEEee----CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 353 GGTADRCIRFWNTTTNTHLSCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 353 gg~~d~~I~iwd~~t~~~~~~~~----~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+ .|+.|++||+...+....+. +...+.++.++ ++++++ |+.||.|+|||+.+++.+
T Consensus 234 s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s--~s~Dg~i~iwd~~tg~~i 293 (342)
T d2ovrb2 234 N--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVIT--SSDDGTVKLWDLKTGEFI 293 (342)
T ss_dssp E--TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEE--EETTSEEEEEETTTCCEE
T ss_pred c--CCCEEEEEecccccccccccccceeeeceeecccC--CCeeEE--EcCCCEEEEEECCCCCEE
Confidence 7 89999999999998887775 34556667665 467877 778999999999987653
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=6.5e-25 Score=207.22 Aligned_cols=185 Identities=12% Similarity=0.040 Sum_probs=151.0
Q ss_pred EeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC--cEEEEECCCCeeeEEec
Q 014934 172 LVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG--KVQIWDASRCKRVRTME 247 (415)
Q Consensus 172 ~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg--~V~iwd~~~~~~~~~l~ 247 (415)
.-+||| ++++|++.++.|++|+..++...++ .|...|++++|+|||++|++++.+. .|++||..+++. ..+.
T Consensus 7 ~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~---~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~ 82 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFE 82 (360)
T ss_dssp EEEEEECGGGCEEEEETTEEEEECTTSSBEEEC---SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECC
T ss_pred cccccCCCCCEEEEEECCeEEEEECCCCcEEEc---cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEee
Confidence 357887 7899999999999999998877653 6889999999999999998876553 799999988764 4577
Q ss_pred CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe----------CCCcE
Q 014934 248 GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG----------NDNRL 315 (415)
Q Consensus 248 ~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~----------~dg~I 315 (415)
.|...|.+++|+ +++|++++.++.+++|++.... ....+..|...+.+++|+|||++||.+. .++.+
T Consensus 83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~ 161 (360)
T d1k32a3 83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161 (360)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred CCCceEEeeeecccccccceeccccccccccccccc-eeeeeecccccccchhhccceeeeeeeccccccceeeccccce
Confidence 899999999998 5799999999999999998887 5677788999999999999999998654 34569
Q ss_pred EEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
++||+.+++.. .+..|...+..++|+|+|+.|+. ++ .++.+++|+.
T Consensus 162 ~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~-~s--~~~~~~~~d~ 207 (360)
T d1k32a3 162 HVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYY-LS--YRSLDPSPDR 207 (360)
T ss_dssp EEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEE-EE--SCCCCCEECS
T ss_pred eeeccccCcee-eecccccccccccccCCCCEEEE-Ee--CCCceEcccc
Confidence 99999887654 44467778888999999885544 33 4566666653
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=6.8e-25 Score=203.66 Aligned_cols=242 Identities=15% Similarity=0.165 Sum_probs=180.7
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEE--eEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCCCeee
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTK--LCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~--~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
.|++|+|+| +++||++ .|++|+|||+.++.... ....+|...|++++|+|+ +.+|++|+.||.|++|++......
T Consensus 13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~ 92 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF 92 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccc
Confidence 699999999 7777777 58999999987654322 222368999999999986 468999999999999999888777
Q ss_pred EEecCCCccEEE-EEe--eCCEEEEEeCCCcEEEEECCCCCccE---EEeccc--cCCeEEEEEeCCCCEEEEEeCCCcE
Q 014934 244 RTMEGHRLRVGA-LAW--SSSLLSSGSRDKSILQRDIRAQEDFV---SKLSGH--KSEVCGLKWSYDNRELASGGNDNRL 315 (415)
Q Consensus 244 ~~l~~h~~~V~~-l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~---~~~~~h--~~~V~~l~~spdg~~lasg~~dg~I 315 (415)
.....+...+.. ..+ ....+++++.|+.+++||++...... .....+ ......+.+.+++..+++++.|+.|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 172 (342)
T d1yfqa_ 93 QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQV 172 (342)
T ss_dssp EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEE
T ss_pred ccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcE
Confidence 666554433322 222 36899999999999999987654221 222222 2345567778899999999999999
Q ss_pred EEEECCCCcee---EEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE---------EEEe-------eC
Q 014934 316 FVWNQHSTQPV---LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH---------LSCM-------DT 376 (415)
Q Consensus 316 ~iwd~~~~~~~---~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~---------~~~~-------~~ 376 (415)
++||+...+.. .....+...+.+..+.+.....+++++ .|+.+.+|+...... .... .+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (342)
T d1yfqa_ 173 QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250 (342)
T ss_dssp EEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS
T ss_pred EEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec--CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcc
Confidence 99999876433 233356667778888777666777776 899999999865321 1111 13
Q ss_pred CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 377 ~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
...|.+++|+|++++|++ |+.||.|+|||+.+.+++
T Consensus 251 ~~~v~~l~~sp~~~~las--g~~Dg~v~vWD~~~~~~l 286 (342)
T d1yfqa_ 251 AYPVNSIEFSPRHKFLYT--AGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp CCCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEE
T ss_pred cccceeEEecCCccEEEE--ECCCCEEEEEECCCCcEE
Confidence 456899999999999999 789999999999987654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.3e-24 Score=203.47 Aligned_cols=228 Identities=16% Similarity=0.214 Sum_probs=167.3
Q ss_pred cceeEeecCCCcEEEEE-cCCeEEEEECCCCCeEEeEecC-CCCCeEEEEEcCCCCeEEEEECCCcEEEEEC--------
Q 014934 168 FYLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLG-IDDSVCSVGWANRNTHLAVGTSHGKVQIWDA-------- 237 (415)
Q Consensus 168 ~~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~~~~~~~~~-~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~-------- 237 (415)
-.|++++|+++++|+++ .|+.|++|+....+........ +...+..+.+.+++.++++|+.||.|++||+
T Consensus 54 ~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~ 133 (355)
T d1nexb2 54 GGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD 133 (355)
T ss_dssp SCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------
T ss_pred CCEEEEEEcCCCEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecc
Confidence 46999999996666655 6899999999887665444321 1222334445555556666666666655554
Q ss_pred -------------------------------------------------------CCCeeeEEecCCCccEEEEEee--C
Q 014934 238 -------------------------------------------------------SRCKRVRTMEGHRLRVGALAWS--S 260 (415)
Q Consensus 238 -------------------------------------------------------~~~~~~~~l~~h~~~V~~l~~~--~ 260 (415)
.+++.+....++...+.++.|+ +
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (355)
T d1nexb2 134 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER 213 (355)
T ss_dssp -----CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred ccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccc
Confidence 4444444555666777778887 5
Q ss_pred CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEE
Q 014934 261 SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIA 340 (415)
Q Consensus 261 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 340 (415)
..+++++.|+.|++||++++. .+..+.+|...|.+++|+ +++|++|+.||.|++||+++..... ..|...+.+++
T Consensus 214 ~~~~~~~~d~~i~i~d~~~~~-~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~ 288 (355)
T d1nexb2 214 KRCISASMDTTIRIWDLENGE-LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAIT 288 (355)
T ss_dssp TEEEEEETTSCEEEEETTTCC-EEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCC
T ss_pred eeeecccccceEEeeeccccc-cccccccccccccccccc--cceeeeeecccccccccccccceec--ccccCCceEEE
Confidence 789999999999999999887 678889999999999986 5799999999999999999876544 45666666665
Q ss_pred E-cCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe--eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 341 W-SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 341 ~-sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~--~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
+ ++++ .++++|+ |+.|++||+++|+++... .+...|.+++|+++. .+++ ++.||++.||.
T Consensus 289 ~~~~~~-~~l~~g~---d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~-~~~~--~s~dg~~~l~~ 351 (355)
T d1nexb2 289 TFYVSD-NILVSGS---ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAA--VEKDGQSFLEI 351 (355)
T ss_dssp EEEECS-SEEEEEE---TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTE-EEEE--EESSSCEEEEE
T ss_pred EEcCCC-CEEEEEe---CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCe-EEEE--EECCCcEEEEE
Confidence 4 5554 5877774 899999999999987543 356789999999863 4444 67899865554
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.2e-23 Score=191.30 Aligned_cols=192 Identities=21% Similarity=0.417 Sum_probs=159.8
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCc---
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQED--- 282 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~--- 282 (415)
+|...|+|++| +|++||+|+.||+|+|||+.+++++.++.+|...|.+++|++++|++|+.|+.|++|++..+..
T Consensus 13 ~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~ 90 (293)
T d1p22a2 13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNT 90 (293)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred CCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeeccccccccccccccccccccc
Confidence 66788998765 7999999999999999999999999999999999999999999999999999999999876531
Q ss_pred ---------------------------------------cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 283 ---------------------------------------FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 283 ---------------------------------------~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
....+..|...|..+.+. ...+++++.|+.|++||++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~ 168 (293)
T d1p22a2 91 LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTC 168 (293)
T ss_dssp ECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTC
T ss_pred ccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCC
Confidence 011133455566666554 457889999999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC-CCEEEEEECCCCCeEEEEEecCCCc
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
+.+..+.+|...|..+.+++. .+++++ .|+.|++||+.+++.+...... ..+. .+++++.+|++ |+.||.
T Consensus 169 ~~~~~~~~~~~~v~~~~~~~~---~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s--g~~dg~ 239 (293)
T d1p22a2 169 EFVRTLNGHKRGIACLQYRDR---LVVSGS--SDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVS--GAYDGK 239 (293)
T ss_dssp CEEEEEECCSSCEEEEEEETT---EEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEE--EEECCSSEEEE--EETTSC
T ss_pred cEEEEEcccccccccccCCCC---eEEEec--CCCEEEEEecccceeeeeecccceeee--eccccceEEEE--EcCCCE
Confidence 999999999999999888753 566666 7999999999999998887643 3444 45677888888 789999
Q ss_pred EEEEECCC
Q 014934 403 IIVWRYPT 410 (415)
Q Consensus 403 I~vw~~~s 410 (415)
|++||+.+
T Consensus 240 i~iwd~~~ 247 (293)
T d1p22a2 240 IKVWDLVA 247 (293)
T ss_dssp EEEEEHHH
T ss_pred EEEEECCC
Confidence 99999754
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=6.7e-24 Score=205.10 Aligned_cols=194 Identities=15% Similarity=0.280 Sum_probs=148.5
Q ss_pred cEEEEE-cCCeEEEEECCCCCeEEeE-----ec----CCCCCeEEEEEcCC-----CCeEEEEECCCcEEEEECCCCe--
Q 014934 179 NVLAVG-LGNCVYLWNACSSKVTKLC-----DL----GIDDSVCSVGWANR-----NTHLAVGTSHGKVQIWDASRCK-- 241 (415)
Q Consensus 179 ~~la~~-~d~~V~iwd~~~~~~~~~~-----~~----~~~~~V~~v~~sp~-----g~~la~g~~dg~V~iwd~~~~~-- 241 (415)
.+++++ .|+.|++|+.......... .. .+...+..++|.++ +.++++++.||.|++|++....
T Consensus 80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~ 159 (393)
T d1sq9a_ 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 159 (393)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence 345444 6899999987544321111 10 12456788888775 4688999999999999974210
Q ss_pred ----------------eeEEecCCCccEEEEEeeC-CEEEEEeCCCcEEEEECCCCCcc-----EEEeccccCCeEEEEE
Q 014934 242 ----------------RVRTMEGHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDF-----VSKLSGHKSEVCGLKW 299 (415)
Q Consensus 242 ----------------~~~~l~~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~-----~~~~~~h~~~V~~l~~ 299 (415)
.......+...+.+++|++ .+|++|+.||+|++||+++.... ...+.+|...|.+++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 239 (393)
T d1sq9a_ 160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239 (393)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred cceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccc
Confidence 1111224556788999995 59999999999999999987632 1234579999999999
Q ss_pred eCCCCEEEEEeCCCc---EEEEECCCCceeEEec-------------cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 300 SYDNRELASGGNDNR---LFVWNQHSTQPVLKYC-------------EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 300 spdg~~lasg~~dg~---I~iwd~~~~~~~~~~~-------------~h~~~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
+|+|++|++|+.|+. |++||+.+++.+..+. +|.+.|++|+|+|+++ +|++++ .|++|++|
T Consensus 240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s--~D~~v~vW 316 (393)
T d1sq9a_ 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAG--WDGKLRFW 316 (393)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEE--TTSEEEEE
T ss_pred ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEEC--CCCEEEEE
Confidence 999999999999874 9999999998877764 7999999999999987 778887 89999999
Q ss_pred ECCCCcEEEEee
Q 014934 364 NTTTNTHLSCMD 375 (415)
Q Consensus 364 d~~t~~~~~~~~ 375 (415)
|+.+|+++..+.
T Consensus 317 d~~~g~~~~~l~ 328 (393)
T d1sq9a_ 317 DVKTKERITTLN 328 (393)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCCCEEEEEC
Confidence 999999998875
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.91 E-value=1.1e-21 Score=180.24 Aligned_cols=225 Identities=15% Similarity=0.111 Sum_probs=175.6
Q ss_pred EcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEE-EEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--C
Q 014934 184 GLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA-VGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--S 260 (415)
Q Consensus 184 ~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la-~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~ 260 (415)
+.+++|.+||+.++++...+..+ ..+..++|+|||++|+ ++..++.|.+||+.+++.+..+..+.. +..++|+ +
T Consensus 9 ~~~~~v~v~D~~t~~~~~~i~~g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~ 85 (301)
T d1l0qa2 9 SESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDG 85 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTS
T ss_pred CCCCEEEEEECCCCeEEEEEECC--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccccccccc
Confidence 36789999999999998888644 5689999999999875 556789999999999999999887654 6778887 3
Q ss_pred C-EEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEE-EeCCCcEEEEECCCCceeEEec--------
Q 014934 261 S-LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELAS-GGNDNRLFVWNQHSTQPVLKYC-------- 330 (415)
Q Consensus 261 ~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-g~~dg~I~iwd~~~~~~~~~~~-------- 330 (415)
. .++++..++.+.+||..... ....+. +...+.++.|+|+++.++. +..++.+.+|+..+.+.+..+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (301)
T d1l0qa2 86 KQVYVTNMASSTLSVIDTTSNT-VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGI 163 (301)
T ss_dssp SEEEEEETTTTEEEEEETTTTE-EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEE
T ss_pred ccccccccccceeeecccccce-eeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEE
Confidence 3 55667778899999998876 344444 3456778899999987754 5567788889887654433321
Q ss_pred ---------------------------------cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC
Q 014934 331 ---------------------------------EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG 377 (415)
Q Consensus 331 ---------------------------------~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~ 377 (415)
.+...+..++|++++..+++++.+..++.|++||+.+++.+..+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~ 243 (301)
T d1l0qa2 164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243 (301)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC
T ss_pred EeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC
Confidence 12234566788888887766655446788999999999999999988
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
..+.+++|+|+|++|+++ +..++.|.+||+.+++.+
T Consensus 244 ~~~~~va~spdg~~l~va-~~~~~~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 244 PDPAGIAVTPDGKKVYVA-LSFCNTVSVIDTATNTIT 279 (301)
T ss_dssp SSEEEEEECTTSSEEEEE-ETTTTEEEEEETTTTEEE
T ss_pred CCEEEEEEeCCCCEEEEE-ECCCCeEEEEECCCCeEE
Confidence 899999999999988654 667899999999988653
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1e-21 Score=180.22 Aligned_cols=189 Identities=18% Similarity=0.309 Sum_probs=154.3
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC-cEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG-KVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg-~V~iwd~~~~~~~~~l 246 (415)
.+.++.+++ +.+++++.++.+.+|+..+++....+.. ...+ .++++++..+++++.++ .|++|++...+....+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~ 157 (287)
T d1pgua2 82 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL--NSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL 157 (287)
T ss_dssp CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC
T ss_pred ceeeeeeccCCceEEEeecccceeeeccceeeeeeccc--ccee--eeeeccCcceeeeccccceeeeeeccccceeeee
Confidence 466778888 5667777888999999999988777753 2333 45677888899988875 6999999876665555
Q ss_pred c-CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC----------CCEEEEEeCCC
Q 014934 247 E-GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD----------NRELASGGNDN 313 (415)
Q Consensus 247 ~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd----------g~~lasg~~dg 313 (415)
. .|...+.+++|+ +.+|++|+.||.|++||+.+.......+.+|...|.+++|+|+ +.+||+|+.|+
T Consensus 158 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~ 237 (287)
T d1pgua2 158 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 237 (287)
T ss_dssp SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS
T ss_pred eeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCC
Confidence 4 578899999998 5799999999999999999887444457789999999999874 56899999999
Q ss_pred cEEEEECCC-CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 314 RLFVWNQHS-TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 314 ~I~iwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
.|+|||+++ .+.+..+.+|...|.+++|+|++ .|+++| .|+.|++||+
T Consensus 238 ~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~--~l~s~g--~D~~v~iW~i 286 (287)
T d1pgua2 238 NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--TLVSSG--ADACIKRWNV 286 (287)
T ss_dssp CEEEEESSCTTCCEEETTSSTTCEEEEEEEETT--EEEEEE--TTSCEEEEEE
T ss_pred eEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC--EEEEEE--CCCeEEEEEE
Confidence 999999977 45677778999999999999986 355665 7999999996
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=9.1e-22 Score=192.27 Aligned_cols=234 Identities=13% Similarity=0.088 Sum_probs=169.4
Q ss_pred CCcEEEE-E-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE--e---cCC
Q 014934 177 SHNVLAV-G-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT--M---EGH 249 (415)
Q Consensus 177 ~~~~la~-~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~--l---~~h 249 (415)
+.+++++ . .++.|+|||..+++++..+..+ ..+.+++|+|||++|++++.||.|++||+.+++.... + .+|
T Consensus 30 ~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g--~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~ 107 (426)
T d1hzua2 30 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG--YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA 107 (426)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCSEEEEEECC--SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE
T ss_pred CCeEEEEEEcCCCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCC
Confidence 3344434 3 4799999999999999888743 5699999999999999999999999999998864432 2 245
Q ss_pred CccEEEEEee--CCEE-EEEeCCCcEEEEECCCCCccEEE----------------------------------------
Q 014934 250 RLRVGALAWS--SSLL-SSGSRDKSILQRDIRAQEDFVSK---------------------------------------- 286 (415)
Q Consensus 250 ~~~V~~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~---------------------------------------- 286 (415)
...+.+++|+ ++++ +++..++.+.+||...... ...
T Consensus 108 ~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~ 186 (426)
T d1hzua2 108 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK 186 (426)
T ss_dssp EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred cceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce-eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCe
Confidence 5556666665 4555 5556889999999876431 100
Q ss_pred ---------------eccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCCC---------------------------
Q 014934 287 ---------------LSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHST--------------------------- 323 (415)
Q Consensus 287 ---------------~~~h~~~V~~l~~spdg~~lasg~-~dg~I~iwd~~~~--------------------------- 323 (415)
...+...+..+.|+|++++++++. .++.+.+|+..++
T Consensus 187 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (426)
T d1hzua2 187 VLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGP 266 (426)
T ss_dssp EEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEE
T ss_pred EEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCc
Confidence 112344567889999999877765 4445666665432
Q ss_pred ---------------------------ceeEEeccCCCcEEEEEEcCCCCcEEEEE----cCCCCCeEEEEECCCCcEEE
Q 014934 324 ---------------------------QPVLKYCEHTAAVKAIAWSPHLHGLLASG----GGTADRCIRFWNTTTNTHLS 372 (415)
Q Consensus 324 ---------------------------~~~~~~~~h~~~V~~l~~sp~~~~llasg----gg~~d~~I~iwd~~t~~~~~ 372 (415)
+....+.+|...+..++|+|++.++++.. +|..|++|++||+.+++...
T Consensus 267 ~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~ 346 (426)
T d1hzua2 267 VWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY 346 (426)
T ss_dssp EEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred eEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCe
Confidence 33445667888899999999999766532 12267899999999998765
Q ss_pred Ee----------eCCCCEEEEEECCCCCeEEEEE---ecCCCcEEEEECCCCcc
Q 014934 373 CM----------DTGSQVCNLVWSKNVNELVSTH---GYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 373 ~~----------~~~~~V~~l~~s~~~~~l~s~~---g~~dg~I~vw~~~s~~~ 413 (415)
++ ++...|.+++|||||++++++. +..++.|+|||..+++.
T Consensus 347 ~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~ 400 (426)
T d1hzua2 347 QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 400 (426)
T ss_dssp EEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred EEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence 54 2455699999999999886542 24578999999999864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=6.3e-21 Score=177.53 Aligned_cols=224 Identities=12% Similarity=0.048 Sum_probs=171.9
Q ss_pred EEEEEcCCeEEEEECCCCCeEEeEecC-CCCCeEEEEEcCCCCeEE-EEECCCcEEEEECCCCeeeEEecCCCcc-----
Q 014934 180 VLAVGLGNCVYLWNACSSKVTKLCDLG-IDDSVCSVGWANRNTHLA-VGTSHGKVQIWDASRCKRVRTMEGHRLR----- 252 (415)
Q Consensus 180 ~la~~~d~~V~iwd~~~~~~~~~~~~~-~~~~V~~v~~sp~g~~la-~g~~dg~V~iwd~~~~~~~~~l~~h~~~----- 252 (415)
+++++.+++|++||+.++++...+... +...+.+++|+|||++++ +++.+|.|.+||+.+++.+..+..+...
T Consensus 4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~ 83 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccc
Confidence 455557899999999999998888764 346688999999999874 5667999999999999998888765433
Q ss_pred EEEEEee--CCEEEEEe------------CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 014934 253 VGALAWS--SSLLSSGS------------RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 253 V~~l~~~--~~~l~sgs------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iw 318 (415)
+..++|+ ++.++++. .+..+.+||..... ....+. +...+.+++|+|||+++++++.+ +.+|
T Consensus 84 ~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~~~~ 159 (337)
T d1pbyb_ 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFE-APRQITMLAWARDGSKLYGLGRD--LHVM 159 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEE-CCSSCCCEEECTTSSCEEEESSS--EEEE
T ss_pred eeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-EEEecc-ccCCceEEEEcCCCCEEEEEcCC--ccee
Confidence 3356776 45666654 46788999998876 344444 44568899999999999998654 6778
Q ss_pred ECCCCceeEEe------------------------------------------------------------------ccC
Q 014934 319 NQHSTQPVLKY------------------------------------------------------------------CEH 332 (415)
Q Consensus 319 d~~~~~~~~~~------------------------------------------------------------------~~h 332 (415)
|..+++....+ ..+
T Consensus 160 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (337)
T d1pbyb_ 160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239 (337)
T ss_dssp ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred eeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC
Confidence 87654332222 123
Q ss_pred CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 333 TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 333 ~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
...+..++++|++.. ++. .++.|++||+.+++.+..+.++..+.+++|+|+|++|++ ++.+|.|.|||..+++
T Consensus 240 ~~~~~~~~~~~~~~~-~~~----~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v--~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 240 DVFYFSTAVNPAKTR-AFG----AYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWL--GGALGDLAAYDAETLE 312 (337)
T ss_dssp SSCEEEEEECTTSSE-EEE----EESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEE--ESBSSEEEEEETTTCC
T ss_pred CcceEEEEecccceE-EEE----ccccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEE--EeCCCcEEEEECCCCc
Confidence 344555667777653 332 268999999999999999999889999999999999998 7789999999999988
Q ss_pred cc
Q 014934 413 KV 414 (415)
Q Consensus 413 ~l 414 (415)
++
T Consensus 313 ~v 314 (337)
T d1pbyb_ 313 KK 314 (337)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=1.2e-21 Score=181.51 Aligned_cols=236 Identities=15% Similarity=0.112 Sum_probs=175.5
Q ss_pred cceeEeecCC--CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe---
Q 014934 168 FYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--- 241 (415)
Q Consensus 168 ~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~--- 241 (415)
-.|.+++|++ +.+|++| .|+.|++|+...+.........+........+.+++..+++++.++.+++||+.+..
T Consensus 57 ~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~ 136 (342)
T d1yfqa_ 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBC
T ss_pred CCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccce
Confidence 3589999987 3466665 689999999998877766654555666677777888999999999999999985432
Q ss_pred -eeEEecCC----CccEEEEEeeCCEEEEEeCCCcEEEEECCCCCcc--EEEeccccCCeEEEEEe-CCCCEEEEEeCCC
Q 014934 242 -RVRTMEGH----RLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDF--VSKLSGHKSEVCGLKWS-YDNRELASGGNDN 313 (415)
Q Consensus 242 -~~~~l~~h----~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~s-pdg~~lasg~~dg 313 (415)
.......+ ......+...+..+++++.|+.|++||++..... ......+...+.+..+. .++..+++++.||
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 216 (342)
T d1yfqa_ 137 IAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp EEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred eeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCC
Confidence 22223222 2234445555789999999999999999876532 23333445556666655 4778999999999
Q ss_pred cEEEEECCCCcee------E---------EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCC
Q 014934 314 RLFVWNQHSTQPV------L---------KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS 378 (415)
Q Consensus 314 ~I~iwd~~~~~~~------~---------~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~ 378 (415)
.+.+|+....... . ....|...|.+++|+|+++ +|++|+ .||.|++||+.+++.+..+....
T Consensus 217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~--~Dg~v~vWD~~~~~~l~~~~~~~ 293 (342)
T d1yfqa_ 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAG--SDGIISCWNLQTRKKIKNFAKFN 293 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEE--TTSCEEEEETTTTEEEEECCCCS
T ss_pred eEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc-EEEEEC--CCCEEEEEECCCCcEEEEecCCC
Confidence 9999997643211 1 1135777899999999997 677777 89999999999999999887666
Q ss_pred CEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 379 QVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 379 ~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
.+..++|+++++.|+++ +.|+.+++|..
T Consensus 294 ~~~~~~~s~~~~~l~~a--~sdd~~~~~~~ 321 (342)
T d1yfqa_ 294 EDSVVKIACSDNILCLA--TSDDTFKTNAA 321 (342)
T ss_dssp SSEEEEEEECSSEEEEE--EECTHHHHCSS
T ss_pred CCEEEEEEeCCCEEEEE--EcCCcEEEeee
Confidence 77778899999999984 45666666654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.88 E-value=2.1e-21 Score=182.81 Aligned_cols=192 Identities=9% Similarity=0.049 Sum_probs=162.8
Q ss_pred EEEEcC-CCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC--CEEEEEeCC-C-cEEEEECCCCCccEEEe
Q 014934 213 SVGWAN-RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRD-K-SILQRDIRAQEDFVSKL 287 (415)
Q Consensus 213 ~v~~sp-~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~~l~sgs~d-g-~I~iwd~~~~~~~~~~~ 287 (415)
.-.||| ||+++|+++ +|.|.+||+..+..++ + +|...|.+++|++ +.|++++.+ + .|++||.+++. ...+
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~--~~~~ 81 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--AEKF 81 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC--EEEC
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc--EEEe
Confidence 356999 999999876 5799999998877654 3 6999999999994 566655544 3 79999998876 5677
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEc-------CCCCCeE
Q 014934 288 SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGG-------GTADRCI 360 (415)
Q Consensus 288 ~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg-------g~~d~~I 360 (415)
..|...|.+++|+|+|++|++++.++.+++|++.+++....+..|...+.+++|+|+|+.++.+.. +..++.+
T Consensus 82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~ 161 (360)
T d1k32a3 82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161 (360)
T ss_dssp CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccce
Confidence 889999999999999999999999999999999999999889899999999999999986655431 2356789
Q ss_pred EEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 361 RFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 361 ~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
++||+.+++......+...+..+.|+|+|+.|++ ++.++.+.+|+....
T Consensus 162 ~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~--~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 162 HVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY--LSYRSLDPSPDRVVL 210 (360)
T ss_dssp EEEETTTTEEEECSCSSSBEEEEEECTTSCEEEE--EESCCCCCEECSSSS
T ss_pred eeeccccCceeeecccccccccccccCCCCEEEE--EeCCCceEccccccc
Confidence 9999999988877778888999999999999998 668899999987554
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=3e-19 Score=166.62 Aligned_cols=235 Identities=13% Similarity=0.070 Sum_probs=165.3
Q ss_pred eecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEE-EECCCcEEEEECCCCeeeEEecCC
Q 014934 173 VDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV-GTSHGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 173 l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~-g~~dg~V~iwd~~~~~~~~~l~~h 249 (415)
+++++ +++|+++ .++.|.+||+.++++...+.+.+...+.+++|+|||+++++ +..++.|.+||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 35677 6777776 57899999999999999888777778899999999998755 457899999999999988776532
Q ss_pred C------ccEEEEEee--CCEEEEEe------------CCCcEEEEECCCCCccEEEecc--ccCCeEEEEEeCCCCEEE
Q 014934 250 R------LRVGALAWS--SSLLSSGS------------RDKSILQRDIRAQEDFVSKLSG--HKSEVCGLKWSYDNRELA 307 (415)
Q Consensus 250 ~------~~V~~l~~~--~~~l~sgs------------~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~la 307 (415)
. ..+..++|+ ++++++++ .++.+.+||..++.. ...+.. ....+..+.+++++.+++
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-AKPVRTFPMPRQVYLMRAADDGSLYV 160 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-BCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee-eeEEEeeeccCceEEEEecCCCEEEE
Confidence 2 123456776 45666554 467788898876542 111111 112333444444444443
Q ss_pred EE----------------------------------------------------------------eCCCcEEEEECCCC
Q 014934 308 SG----------------------------------------------------------------GNDNRLFVWNQHST 323 (415)
Q Consensus 308 sg----------------------------------------------------------------~~dg~I~iwd~~~~ 323 (415)
++ ..++.+.+||+.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (346)
T d1jmxb_ 161 AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 240 (346)
T ss_dssp ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred eCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC
Confidence 32 11122333444433
Q ss_pred ceeE-EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCc
Q 014934 324 QPVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 324 ~~~~-~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
.... .+..|...+..+.+++++..++... ++.|.+||+.+++.+..+..+..+.+++|+|||++|++ ++.|+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v--~~~d~~ 314 (346)
T d1jmxb_ 241 KTHTQEFADLTELYFTGLRSPKDPNQIYGV----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYL--GGTFND 314 (346)
T ss_dssp CEEEEEEEECSSCEEEEEECSSCTTEEEEE----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEE--ESBSSE
T ss_pred ceEEEEeecccceeEEEEEeCCCCEEEEec----CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEE--EeCCCc
Confidence 3222 2234666777888888887655433 56899999999999999998889999999999999999 678999
Q ss_pred EEEEECCCCccc
Q 014934 403 IIVWRYPTMSKV 414 (415)
Q Consensus 403 I~vw~~~s~~~l 414 (415)
|.|||..+++.+
T Consensus 315 v~v~D~~t~~~i 326 (346)
T d1jmxb_ 315 LAVFNPDTLEKV 326 (346)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECccCCEE
Confidence 999999998764
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=4.5e-17 Score=159.19 Aligned_cols=227 Identities=12% Similarity=0.053 Sum_probs=163.4
Q ss_pred CcEEEEE--cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee--eEEe---cCCC
Q 014934 178 HNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR--VRTM---EGHR 250 (415)
Q Consensus 178 ~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~--~~~l---~~h~ 250 (415)
.+++++. .++.|.|||..++++...+..+ ..+..++|+|||++|++++.||.|.+||+.+++. +..+ .+|.
T Consensus 31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g--~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~ 108 (432)
T d1qksa2 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 108 (432)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CcEEEEEEcCCCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence 3454343 4689999999999999998744 4699999999999999999999999999987653 3333 2455
Q ss_pred ccEEEEEee--CCE-EEEEeCCCcEEEEECCCCCccEEEecc-----------ccCCeEEEEEeCCCCEEE-EEeCCCcE
Q 014934 251 LRVGALAWS--SSL-LSSGSRDKSILQRDIRAQEDFVSKLSG-----------HKSEVCGLKWSYDNRELA-SGGNDNRL 315 (415)
Q Consensus 251 ~~V~~l~~~--~~~-l~sgs~dg~I~iwd~~~~~~~~~~~~~-----------h~~~V~~l~~spdg~~la-sg~~dg~I 315 (415)
+.+.+..|+ +++ +++++.+++|.+||..+++ ++..+.. +......+.++|+|..++ +...++.|
T Consensus 109 ~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i 187 (432)
T d1qksa2 109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 187 (432)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred CeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc-ceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence 555555665 465 4788899999999999887 4444433 334567788999998764 56678999
Q ss_pred EEEECCCCceeEEec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC------CCEEEEEECCC
Q 014934 316 FVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG------SQVCNLVWSKN 388 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~------~~V~~l~~s~~ 388 (415)
.+||..+.+...... .+...+..++|+|+|+++++++. .+..+.++|..+++.+..+.++ .......+...
T Consensus 188 ~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~--~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 265 (432)
T d1qksa2 188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTF 265 (432)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTT
T ss_pred EEEEccCCCcceEEEEcccCccccceECCCCCEEEEecc--ccceEEEeecccceEEEEeccCccccccCcccceecCCC
Confidence 999998876544332 45667899999999998888876 6889999999988877766533 22333444444
Q ss_pred CCeEEEEEecCCCcEEEEECCC
Q 014934 389 VNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+...++. ...++.|.+|...+
T Consensus 266 g~~~~~~-~lg~~~v~~~~~~~ 286 (432)
T d1qksa2 266 GPVWATS-HMGDDSVALIGTDP 286 (432)
T ss_dssp EEEEEEE-BSSSSEEEEEECCT
T ss_pred Cceeccc-ccCCceEEeccccc
Confidence 4444332 22355666665543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=2.3e-17 Score=161.29 Aligned_cols=189 Identities=13% Similarity=0.046 Sum_probs=154.4
Q ss_pred CeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc-EEE---eccccCCe
Q 014934 221 THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF-VSK---LSGHKSEV 294 (415)
Q Consensus 221 ~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~-~~~---~~~h~~~V 294 (415)
-++++.+.+|+|.|||..+++++..+..+. .+..++|+ ++++++++.|+.|.+||+.+.+.. ... ..+|...+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~ 111 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE 111 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence 345788889999999999999999998774 69999999 579999999999999999876532 222 23555666
Q ss_pred EEEEEeCCCCEE-EEEeCCCcEEEEECCCCceeEEecc-----------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEE
Q 014934 295 CGLKWSYDNREL-ASGGNDNRLFVWNQHSTQPVLKYCE-----------HTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (415)
Q Consensus 295 ~~l~~spdg~~l-asg~~dg~I~iwd~~~~~~~~~~~~-----------h~~~V~~l~~sp~~~~llasggg~~d~~I~i 362 (415)
.+..|+|||++| +++..++.|.|||..+++++..+.. +.....++.++|++..++++.. .++.|.+
T Consensus 112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~--~~~~i~~ 189 (432)
T d1qksa2 112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK--ETGKILL 189 (432)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET--TTTEEEE
T ss_pred EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc--cCCeEEE
Confidence 677788899986 6788899999999999998877654 3455678999999998888876 7899999
Q ss_pred EECCCCcEE--EEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 363 WNTTTNTHL--SCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 363 wd~~t~~~~--~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
||..+++.. ..+.++..+..+.|+|+|++++++ +..++.+.+++..+.+.
T Consensus 190 ~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va-~~~~~~v~v~d~~~~~~ 241 (432)
T d1qksa2 190 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA-ANARNKLVVIDTKEGKL 241 (432)
T ss_dssp EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE-EGGGTEEEEEETTTTEE
T ss_pred EEccCCCcceEEEEcccCccccceECCCCCEEEEe-ccccceEEEeecccceE
Confidence 999988754 456788889999999999998886 45677999999887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.77 E-value=4.7e-16 Score=147.24 Aligned_cols=238 Identities=7% Similarity=-0.089 Sum_probs=161.3
Q ss_pred ceeEeecCC-CcEEEEE------cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC----------CCc
Q 014934 169 YLNLVDWSS-HNVLAVG------LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS----------HGK 231 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~------~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~----------dg~ 231 (415)
.++.++++| +..+++. ..+.|++||..+++....+.. + ....++|+|||++|+++.. ++.
T Consensus 22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~-~--~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~ 98 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-G--FLPNPVAAHSGSEFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred CccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC-C--CCccEEEcCCCCEEEEEeecCCcccccccceE
Confidence 356677888 5555543 235799999999998887753 2 2347999999999998753 578
Q ss_pred EEEEECCCCeeeEEecCCCccEEEEEee---------CCEEE--EEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEe
Q 014934 232 VQIWDASRCKRVRTMEGHRLRVGALAWS---------SSLLS--SGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS 300 (415)
Q Consensus 232 V~iwd~~~~~~~~~l~~h~~~V~~l~~~---------~~~l~--sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 300 (415)
|.+||..+++.+..+..+......+... +..++ ....++.+.+|+..... . ..+.....++.++
T Consensus 99 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~s 173 (373)
T d2madh_ 99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS-D----DQLLSSPTCYHIH 173 (373)
T ss_pred EEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe-E----EEEeccceeEEEe
Confidence 9999999999988887766655444333 23222 22334556666665443 1 2233456678899
Q ss_pred CCCCEE-EEEeCCCcEEEEECCCCceeEEec-------------------------------------------------
Q 014934 301 YDNREL-ASGGNDNRLFVWNQHSTQPVLKYC------------------------------------------------- 330 (415)
Q Consensus 301 pdg~~l-asg~~dg~I~iwd~~~~~~~~~~~------------------------------------------------- 330 (415)
|+|+.+ ++.+.|+.+.+||...++......
T Consensus 174 ~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 253 (373)
T d2madh_ 174 PGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID 253 (373)
T ss_pred cCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeec
Confidence 988754 677889999999976543222110
Q ss_pred cCC----------CcEEEEEEcCCCCcEEEEEc-------CCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEE
Q 014934 331 EHT----------AAVKAIAWSPHLHGLLASGG-------GTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 331 ~h~----------~~V~~l~~sp~~~~llasgg-------g~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~ 393 (415)
.+. .....+++++++..++.... ...++.|.+||+.+++.+..+.++..+..++|+|||+.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l 333 (373)
T d2madh_ 254 ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDL 333 (373)
T ss_pred cccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEE
Confidence 000 01123455555554332211 1146789999999999999999999999999999999754
Q ss_pred EEEecCCCcEEEEECCCCccc
Q 014934 394 STHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s~~~l 414 (415)
...+..|+.|+|||+.+++.+
T Consensus 334 ~vt~~~d~~v~v~D~~tg~~~ 354 (373)
T d2madh_ 334 YALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EEEeCCCCeEEEEECCCCCEE
Confidence 333788999999999998754
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1.1e-16 Score=148.53 Aligned_cols=227 Identities=14% Similarity=0.110 Sum_probs=154.1
Q ss_pred EEEEE-cCCeEEEEECCCCCe-EEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCeeeEEe---cCCCccE
Q 014934 180 VLAVG-LGNCVYLWNACSSKV-TKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVRTM---EGHRLRV 253 (415)
Q Consensus 180 ~la~~-~d~~V~iwd~~~~~~-~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~~~~l---~~h~~~V 253 (415)
+++++ .+++|++|++.+... ..+..+.+.+.|.+|+|+|||++|++++ .|+.|++|++........+ ..+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 44444 678999999876543 3333346778999999999999996665 4899999999765432222 2244556
Q ss_pred EEEEee--CCEEEEEeC-CCcEEEEECCCCCcc-EEEeccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEECCCCceeEE
Q 014934 254 GALAWS--SSLLSSGSR-DKSILQRDIRAQEDF-VSKLSGHKSEVCGLKWSYDNRELASGGN-DNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 254 ~~l~~~--~~~l~sgs~-dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg~~lasg~~-dg~I~iwd~~~~~~~~~ 328 (415)
..++|+ +++|++++. ++.|.+|+....... ......+...+.++.++|+++++++++. +..|.+|+.........
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence 778998 467777774 678899987765421 2233456667888899999998877664 45688887644211000
Q ss_pred -----------------------------------------------------ec------cCCCcEEEEEEcCCCCcEE
Q 014934 329 -----------------------------------------------------YC------EHTAAVKAIAWSPHLHGLL 349 (415)
Q Consensus 329 -----------------------------------------------------~~------~h~~~V~~l~~sp~~~~ll 349 (415)
.. ........++++++++.++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~ 245 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 245 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence 00 0112345678888888777
Q ss_pred EEEcCCCCCeEEEEECCCCcEEE----EeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 350 ASGGGTADRCIRFWNTTTNTHLS----CMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 350 asggg~~d~~I~iwd~~t~~~~~----~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+++. .++.+.+|++....... ...++..+.+++|+|||++|+++ +..++.|.+|++.
T Consensus 246 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va-~~~~~~v~v~~id 306 (333)
T d1ri6a_ 246 ACDR--TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAA-GQKSHHISVYEIV 306 (333)
T ss_dssp EEET--TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEE-CTTTCEEEEEEEE
T ss_pred eecc--cCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEE-ECCCCeEEEEEEE
Confidence 7765 67889999886543322 22355667889999999998875 5667899999653
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.71 E-value=9.3e-15 Score=133.11 Aligned_cols=203 Identities=12% Similarity=0.069 Sum_probs=155.8
Q ss_pred ceeEeecCC-CcEE-EEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCCcEEEEECCCCeeeE
Q 014934 169 YLNLVDWSS-HNVL-AVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 169 ~i~~l~ws~-~~~l-a~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg~V~iwd~~~~~~~~ 244 (415)
....+.|++ +..+ +++ .++.+.+|+..+++....+. +...+.++.|+|+|..++++ ..++.+.+|+..+.+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (301)
T d1l0qa2 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (301)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cccccccccccccccccccccceeeecccccceeeeecc--ccccceEEEeecCCCeeeeeeccccceeeeeccccceee
Confidence 356788888 5444 444 35789999999988777764 45678999999999977655 457789999999999888
Q ss_pred EecCCCccEEEEEee--CCEEEEEeCC-CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe---CCCcEEEE
Q 014934 245 TMEGHRLRVGALAWS--SSLLSSGSRD-KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG---NDNRLFVW 318 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~--~~~l~sgs~d-g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~---~dg~I~iw 318 (415)
.+..+ ..+..++++ +..+++++.+ +.+.+|+..... ...... +...+.+++|+++++.+++++ .++.|++|
T Consensus 153 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~ 229 (301)
T d1l0qa2 153 TVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (301)
T ss_dssp EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred ecccC-CCceEEEeeccccceeeeccccccccccccccee-eeeccc-ccCCcceeeccccccccccccccceeeeeeee
Confidence 88754 457788887 3566666655 566677766554 344433 345678899999999887654 34689999
Q ss_pred ECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCC
Q 014934 319 NQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ 379 (415)
Q Consensus 319 d~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~ 379 (415)
|+.+++.+..+.. ...+.+++|+|+|++++++++ .|+.|++||+.+++.+.++..+..
T Consensus 230 D~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~--~~~~i~v~D~~t~~~~~~~~vg~~ 287 (301)
T d1l0qa2 230 DTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALS--FCNTVSVIDTATNTITATMAVGKN 287 (301)
T ss_dssp ETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSS
T ss_pred ecCCCeEEEEEcC-CCCEEEEEEeCCCCEEEEEEC--CCCeEEEEECCCCeEEEEEeCCCC
Confidence 9999998888754 456899999999998888886 799999999999999999876544
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=1.5e-15 Score=142.29 Aligned_cols=242 Identities=10% Similarity=0.029 Sum_probs=171.2
Q ss_pred EeecCC-CcEEEEE-----------cCCeEEEEECCCCCeEEeEecCC------CCCeEEEEEcCCCCeEEEEEC--CCc
Q 014934 172 LVDWSS-HNVLAVG-----------LGNCVYLWNACSSKVTKLCDLGI------DDSVCSVGWANRNTHLAVGTS--HGK 231 (415)
Q Consensus 172 ~l~ws~-~~~la~~-----------~d~~V~iwd~~~~~~~~~~~~~~------~~~V~~v~~sp~g~~la~g~~--dg~ 231 (415)
.++||| ++.|++. .++.|++||..+++......... ......++|+++|++++++.. +..
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 130 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 130 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCce
Confidence 678999 6666553 25789999999999887765421 223456899999998888753 567
Q ss_pred EEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEE-----eccccCCeEEEEEeCCCCEE
Q 014934 232 VQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK-----LSGHKSEVCGLKWSYDNREL 306 (415)
Q Consensus 232 V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-----~~~h~~~V~~l~~spdg~~l 306 (415)
+.+|+..+++.+..+..+... ......+...+..+.|+....+........... ...+...+....+.+++..+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (355)
T d2bbkh_ 131 VGVVDLEGKAFKRMLDVPDCY-HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL 209 (355)
T ss_dssp EEEEETTTTEEEEEEECCSEE-EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred eeeeecCCCcEeeEEecCCcc-eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeE
Confidence 999999999988887754432 223333556666777877777765544322111 11233445667888899999
Q ss_pred EEEeCCCcEEEEECCCCceeE--EeccCC----------CcEEEEEEcCCCCcEEEEEcC-------CCCCeEEEEECCC
Q 014934 307 ASGGNDNRLFVWNQHSTQPVL--KYCEHT----------AAVKAIAWSPHLHGLLASGGG-------TADRCIRFWNTTT 367 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~~~--~~~~h~----------~~V~~l~~sp~~~~llasggg-------~~d~~I~iwd~~t 367 (415)
+.++.++.+++|++..++... ....+. .....+++++++..+++.... .....|.+||+.+
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t 289 (355)
T d2bbkh_ 210 VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 289 (355)
T ss_dssp EEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC
Confidence 999999999999998775422 111111 223458899999877665431 1235799999999
Q ss_pred CcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 368 NTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 368 ~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
++.+..+..+..+.+++|+|||+.++.+++..|+.|.|||..+++.+
T Consensus 290 ~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~ 336 (355)
T d2bbkh_ 290 GERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 336 (355)
T ss_dssp CCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence 99999988888899999999998543333778999999999998754
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.68 E-value=4.5e-15 Score=137.18 Aligned_cols=198 Identities=14% Similarity=0.089 Sum_probs=148.1
Q ss_pred ceeEeecCC-CcEE-EEE-cCCeEEEEECCCCCeEEeEecCC----CCCeEEEEEcCCCCeEEEEE------------CC
Q 014934 169 YLNLVDWSS-HNVL-AVG-LGNCVYLWNACSSKVTKLCDLGI----DDSVCSVGWANRNTHLAVGT------------SH 229 (415)
Q Consensus 169 ~i~~l~ws~-~~~l-a~~-~d~~V~iwd~~~~~~~~~~~~~~----~~~V~~v~~sp~g~~la~g~------------~d 229 (415)
.+..++|+| ++.| +++ .++.|++||+.+++......... ...+..++|+|++++++++. .+
T Consensus 35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T d1pbyb_ 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccc
Confidence 456789999 6665 444 47899999999999887776421 12355789999999998876 35
Q ss_pred CcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc-------------------------
Q 014934 230 GKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED------------------------- 282 (415)
Q Consensus 230 g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~------------------------- 282 (415)
+.+.+||..+++.+..+.. ...+.+++|+ +.++++++.+ +.+||......
T Consensus 115 ~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (337)
T d1pbyb_ 115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ 191 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred cceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeecc
Confidence 7899999999998888874 3457778887 5677777544 56677654320
Q ss_pred ----------------------------------------cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 283 ----------------------------------------FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 283 ----------------------------------------~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
....+..+...+..+.++|++.+++.+ ++.|++||+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~ 269 (337)
T d1pbyb_ 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK 269 (337)
T ss_dssp CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred ccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCC
Confidence 011122344456677788888888766 57899999999
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
++.+..+ .+...+.+++|+|+|+.+++ ++ .|+.|++||+.+++.+..+.
T Consensus 270 ~~~~~~~-~~~~~~~~~~~s~dG~~l~v-~~--~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 270 NASIKRV-PLPHSYYSVNVSTDGSTVWL-GG--ALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp TEEEEEE-ECSSCCCEEEECTTSCEEEE-ES--BSSEEEEEETTTCCEEEEEE
T ss_pred CcEEEEE-cCCCCEEEEEECCCCCEEEE-Ee--CCCcEEEEECCCCcEEEEEE
Confidence 9998887 56678899999999995555 44 79999999999999998886
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.67 E-value=3.3e-15 Score=145.00 Aligned_cols=188 Identities=13% Similarity=0.074 Sum_probs=146.6
Q ss_pred eEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccE----EEeccccCCeE
Q 014934 222 HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFV----SKLSGHKSEVC 295 (415)
Q Consensus 222 ~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~----~~~~~h~~~V~ 295 (415)
++++...||.|+|||+.+++.+.++..|. .+..++|+ +++|++++.|++|++||+.+.+... ....+|...+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 45667789999999999999999999775 58999998 6899999999999999998876321 12235666677
Q ss_pred EEEEeCCCCEEEE-EeCCCcEEEEECCCCceeEEeccCCC-----------cEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 296 GLKWSYDNRELAS-GGNDNRLFVWNQHSTQPVLKYCEHTA-----------AVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 296 ~l~~spdg~~las-g~~dg~I~iwd~~~~~~~~~~~~h~~-----------~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
+++|+|||++|++ +..++.+.+||..++.++..+..|.. ....+++++++..++.+.. ..+.+.++
T Consensus 113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~--~~~~i~~~ 190 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK--ETGKVLLV 190 (426)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET--TTTEEEEE
T ss_pred eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC--CCCeEEEE
Confidence 7888899998755 45889999999999988877765443 3456677777776666554 46777777
Q ss_pred ECCCCc--EEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 364 NTTTNT--HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 364 d~~t~~--~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+...+. .+..+.++..+..+.|+|++++++++ ...++.+.+|+..+++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a-~~~~~~~~~~~~~~~~~ 241 (426)
T d1hzua2 191 NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTA-ANNSNKVAVIDSKDRRL 241 (426)
T ss_dssp ECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEE-ETTCSEEEEEETTTTEE
T ss_pred EeccccceeeEEeccCCccEeeeECCCCcEEEee-eecccceeeeecccccE
Confidence 776655 34455678889999999999999886 45778899999887754
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.60 E-value=1.8e-14 Score=136.69 Aligned_cols=241 Identities=8% Similarity=-0.009 Sum_probs=168.3
Q ss_pred eEeecCC-CcEEEEEc-----------CCeEEEEECCCCCeEEeEecCCC------CCeEEEEEcCCCCeEEEEE-CCCc
Q 014934 171 NLVDWSS-HNVLAVGL-----------GNCVYLWNACSSKVTKLCDLGID------DSVCSVGWANRNTHLAVGT-SHGK 231 (415)
Q Consensus 171 ~~l~ws~-~~~la~~~-----------d~~V~iwd~~~~~~~~~~~~~~~------~~V~~v~~sp~g~~la~g~-~dg~ 231 (415)
..+.|+| +..|++.. ++.|.+||..+++....+..... .....++|+|||++|+++. .++.
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~ 147 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA 147 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCe
Confidence 3578999 67777653 45699999999998877754221 2234689999999998886 5789
Q ss_pred EEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEE-----eccccCCeEEEEEeCCCCEE
Q 014934 232 VQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK-----LSGHKSEVCGLKWSYDNREL 306 (415)
Q Consensus 232 V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-----~~~h~~~V~~l~~spdg~~l 306 (415)
|.+||+.+++.+..+..+..... .......++..+.||.+.++++......... ...+...+....+.+++..+
T Consensus 148 v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 226 (368)
T d1mdah_ 148 AAGLSVPGASDDQLTKSASCFHI-HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV 226 (368)
T ss_dssp EEEEEETTTEEEEEEECSSCCCC-EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred EEEEECCCCcEeEEeeccCcceE-ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEE
Confidence 99999999998888765543211 1122567888899999999998766532221 22344556677888888766
Q ss_pred EEEeCCCcEEEEECCCCceeEEec--cC----------CCcEEEEEEcCCCCcEEEEEcC------CCCCeEEEEECCCC
Q 014934 307 ASGGNDNRLFVWNQHSTQPVLKYC--EH----------TAAVKAIAWSPHLHGLLASGGG------TADRCIRFWNTTTN 368 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~~~~~~--~h----------~~~V~~l~~sp~~~~llasggg------~~d~~I~iwd~~t~ 368 (415)
.+. .+.+++++........... .+ ......++++|++..+++...+ .....|.+||..++
T Consensus 227 ~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~ 304 (368)
T d1mdah_ 227 WAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG 304 (368)
T ss_dssp ECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred Eec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC
Confidence 654 4557777776554433221 11 1122357889998877665421 01246999999999
Q ss_pred cEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 369 THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 369 ~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+.+..+..+..+..++|+|||+.++...+..++.|.|||..+++.+
T Consensus 305 ~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~ 350 (368)
T d1mdah_ 305 QTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp CEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred cEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence 9999888888899999999998543333678899999999988754
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.56 E-value=2.8e-13 Score=125.34 Aligned_cols=205 Identities=12% Similarity=0.053 Sum_probs=140.7
Q ss_pred CcceeEeecCC-CcEEEE-E-cCCeEEEEECCCCCeEEeEecCCC-----CCeEEEEEcCCCCeEEEEE-----------
Q 014934 167 DFYLNLVDWSS-HNVLAV-G-LGNCVYLWNACSSKVTKLCDLGID-----DSVCSVGWANRNTHLAVGT----------- 227 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~-~-~d~~V~iwd~~~~~~~~~~~~~~~-----~~V~~v~~sp~g~~la~g~----------- 227 (415)
...+..++|+| ++.+.+ + .++.|++||+.+++.......... ..+..++|+|||++++++.
T Consensus 39 ~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~ 118 (346)
T d1jmxb_ 39 KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118 (346)
T ss_dssp CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred CCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeec
Confidence 34467899999 566544 4 468999999999988877654321 2356789999999887765
Q ss_pred -CCCcEEEEECCCCeeeEEecCC--CccE-----------------------------EEE---------Eee-------
Q 014934 228 -SHGKVQIWDASRCKRVRTMEGH--RLRV-----------------------------GAL---------AWS------- 259 (415)
Q Consensus 228 -~dg~V~iwd~~~~~~~~~l~~h--~~~V-----------------------------~~l---------~~~------- 259 (415)
.++.+.+||..+++....+..+ ...+ ..+ .++
T Consensus 119 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (346)
T d1jmxb_ 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 198 (346)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred cCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEE
Confidence 3566778876554322111100 0000 000 000
Q ss_pred ---------------------CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 014934 260 ---------------------SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 260 ---------------------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iw 318 (415)
...+.++..++.+.+||.............|...+..+.+++++.+++.+.. +.|.+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~ 277 (346)
T d1jmxb_ 199 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKY 277 (346)
T ss_dssp CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEE
T ss_pred EEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEE
Confidence 0011222334457777877776545556678888999999999888887664 579999
Q ss_pred ECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC
Q 014934 319 NQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT 376 (415)
Q Consensus 319 d~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~ 376 (415)
|..+++.+..+. +...+.+++|+|+|+.+++ ++ .|+.|++||+.+++.+..++.
T Consensus 278 d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v-~~--~d~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 278 DLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL-GG--TFNDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp ETTTTEEEEEEE-CSSCCCEEEECSSSSCEEE-ES--BSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEE-Ee--CCCcEEEEECccCCEEEEEEC
Confidence 999999888774 5567999999999986655 44 799999999999999999874
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.54 E-value=3.6e-12 Score=119.88 Aligned_cols=173 Identities=10% Similarity=-0.024 Sum_probs=114.7
Q ss_pred EEEEEcCCCCeE-EEEECCCcEEEEECCCCeeeEEecCC------CccEEEEEeeC-CEEEEEeCCCcEEEEECCCCCcc
Q 014934 212 CSVGWANRNTHL-AVGTSHGKVQIWDASRCKRVRTMEGH------RLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDF 283 (415)
Q Consensus 212 ~~v~~sp~g~~l-a~g~~dg~V~iwd~~~~~~~~~l~~h------~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~ 283 (415)
.++.++++|+.+ ++++.||.+.+|+...++.......+ ......+.+.+ ..++..+.++.+.+|+.......
T Consensus 168 ~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 247 (373)
T d2madh_ 168 TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT 247 (373)
T ss_pred eeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEE
Confidence 455566666543 45666777777777766655544322 12223334443 45666678888888888765421
Q ss_pred -EEEeccc----------cCCeEEEEEeCCCCEEE----------EEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEc
Q 014934 284 -VSKLSGH----------KSEVCGLKWSYDNRELA----------SGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342 (415)
Q Consensus 284 -~~~~~~h----------~~~V~~l~~spdg~~la----------sg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 342 (415)
......+ ......+++++++..++ +...++.+.+||..+++.+..+ .+...+.+++|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~-~~~~~~~~~a~s 326 (373)
T d2madh_ 248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-SLGHDVDAISVA 326 (373)
T ss_pred EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe-cCCCCeeEEEEC
Confidence 1111111 12234456666665543 4556778999999999998887 567789999999
Q ss_pred CCCCcE-EEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECC
Q 014934 343 PHLHGL-LASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSK 387 (415)
Q Consensus 343 p~~~~l-lasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~ 387 (415)
|+|+.+ +++++ .|+.|++||+.+++.+..+. ++.....+++..
T Consensus 327 pDG~~~l~vt~~--~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~ 371 (373)
T d2madh_ 327 QDGGPDLYALSA--GTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN 371 (373)
T ss_pred CCCCEEEEEEeC--CCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence 999875 45665 79999999999999999997 566666666544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=2.3e-12 Score=118.75 Aligned_cols=187 Identities=12% Similarity=0.123 Sum_probs=136.1
Q ss_pred eEEEEECCCcEEEEECCCCeeeEEe--cCCCccEEEEEeeC--CEEEE-EeCCCcEEEEECCCCCccEE--EeccccCCe
Q 014934 222 HLAVGTSHGKVQIWDASRCKRVRTM--EGHRLRVGALAWSS--SLLSS-GSRDKSILQRDIRAQEDFVS--KLSGHKSEV 294 (415)
Q Consensus 222 ~la~g~~dg~V~iwd~~~~~~~~~l--~~h~~~V~~l~~~~--~~l~s-gs~dg~I~iwd~~~~~~~~~--~~~~h~~~V 294 (415)
.++++..+++|++|++.....+..+ ..|.+.+..|+|++ ++|++ +..|+.|.+|++........ ....+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 3466778999999999765433222 25788899999994 67755 45589999999986653222 222345668
Q ss_pred EEEEEeCCCCEEEEEeC-CCcEEEEECCCCceeE--EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE
Q 014934 295 CGLKWSYDNRELASGGN-DNRLFVWNQHSTQPVL--KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371 (415)
Q Consensus 295 ~~l~~spdg~~lasg~~-dg~I~iwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~ 371 (415)
++++|+|||++|++++. ++.|.+|+........ ....+...+.++.++|+++.+++... .+..|.+|+..+....
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~--~~~~i~~~~~~~~~~~ 163 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL--KQDRICLFTVSDDGHL 163 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG--GGTEEEEEEECTTSCE
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccc--ccceeeEEEeccCCcc
Confidence 89999999999998875 6689999887665433 33456777889999999997777765 6788999998775433
Q ss_pred EE-------eeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 372 SC-------MDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 372 ~~-------~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
.. ...+.....++|++++..++.+ ....+...+|++...
T Consensus 164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~-~~~~~~~~v~~~~~~ 209 (333)
T d1ri6a_ 164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV-NELNSSVDVWELKDP 209 (333)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEESSCT
T ss_pred eeeeceeeeeecCCCccEEEEeccceeEEee-ccccCceEEEeeccc
Confidence 22 1245678899999999988775 456778888887543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.39 E-value=3.4e-11 Score=117.47 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=102.5
Q ss_pred EeecCCCcEEEEEcCCeEEEEECCCCCeEEeEec----CCCCCeEEEEEcCCCCeEEEEEC---------CCcEEEEECC
Q 014934 172 LVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDL----GIDDSVCSVGWANRNTHLAVGTS---------HGKVQIWDAS 238 (415)
Q Consensus 172 ~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~----~~~~~V~~v~~sp~g~~la~g~~---------dg~V~iwd~~ 238 (415)
.+.|.++.-+..-.++.|++||+.+++...++.. .+...|.++.|||||++|+.++. +|.+.|||+.
T Consensus 21 ~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~ 100 (470)
T d2bgra1 21 SLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN 100 (470)
T ss_dssp CCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred CCEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECC
Confidence 3568884444455688999999999998776642 23467999999999999998853 5678999999
Q ss_pred CCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEecc------------------ccCCeEEEE
Q 014934 239 RCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSG------------------HKSEVCGLK 298 (415)
Q Consensus 239 ~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------------------h~~~V~~l~ 298 (415)
+++. ..+..|...+..+.|+ ++.++.. .++.+++|+...+.. ...... ..+...++.
T Consensus 101 ~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~-~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 177 (470)
T d2bgra1 101 KRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS-YRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (470)
T ss_dssp TTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC-EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred CCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCce-eeeeeccCCCcccccccceeeeeeecCCccccE
Confidence 8774 4578889999999999 4667764 567899999987763 222211 122345688
Q ss_pred EeCCCCEEEEEeC
Q 014934 299 WSYDNRELASGGN 311 (415)
Q Consensus 299 ~spdg~~lasg~~ 311 (415)
|||||++||....
T Consensus 178 wSPDGk~ia~~~~ 190 (470)
T d2bgra1 178 WSPNGTFLAYAQF 190 (470)
T ss_dssp ECTTSSEEEEEEE
T ss_pred ECCCCCccceeEe
Confidence 9999999998654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.32 E-value=1.8e-10 Score=106.86 Aligned_cols=209 Identities=10% Similarity=0.047 Sum_probs=136.5
Q ss_pred eeEeecCC-CcEEEEE---cCCeEEEEECCCCCeEEeEecCCC------CCeEEEEEcCCCCeEEEEE-CCCcEEEEECC
Q 014934 170 LNLVDWSS-HNVLAVG---LGNCVYLWNACSSKVTKLCDLGID------DSVCSVGWANRNTHLAVGT-SHGKVQIWDAS 238 (415)
Q Consensus 170 i~~l~ws~-~~~la~~---~d~~V~iwd~~~~~~~~~~~~~~~------~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~ 238 (415)
...+.|++ ++.+.+. .+..+++|+..+++....+..... .....+.++++|+.+++.. .++.+.+++..
T Consensus 108 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~ 187 (355)
T d2bbkh_ 108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE 187 (355)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred CceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence 34578888 6655554 246899999999988777653221 1223455566665554432 23344444443
Q ss_pred CCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccE-EEeccc----------cCCeEEEEEeCCCCE
Q 014934 239 RCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFV-SKLSGH----------KSEVCGLKWSYDNRE 305 (415)
Q Consensus 239 ~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~h----------~~~V~~l~~spdg~~ 305 (415)
.... .+...+....+. +..++.++.++.+++|++..+.... .....+ ......+++++++..
T Consensus 188 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~ 262 (355)
T d2bbkh_ 188 VFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 262 (355)
T ss_dssp CCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred cccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCe
Confidence 3221 233334444555 5788889999999999998765211 111111 122345889999998
Q ss_pred EEEEeCC----------CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcE-EEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 306 LASGGND----------NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGL-LASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 306 lasg~~d----------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l-lasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
++....+ +.|.+||..+++.+..+. +...+.+++|+|+|+.+ +++++ .|+.|++||+.+++.+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~--~d~~i~v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALST--GDKTLYIHDAESGEELRSV 339 (355)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEET--TTTEEEEEETTTCCEEEEE
T ss_pred EEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEEC--CCCEEEEEECCCCCEEEEE
Confidence 8775443 369999999999888874 44568899999999864 55655 7999999999999999998
Q ss_pred e-CCCCEEEEEEC
Q 014934 375 D-TGSQVCNLVWS 386 (415)
Q Consensus 375 ~-~~~~V~~l~~s 386 (415)
. .+.....+.+.
T Consensus 340 ~~~G~~p~~i~~~ 352 (355)
T d2bbkh_ 340 NQLGHGPQVITTA 352 (355)
T ss_dssp CCCCSSCCEEECC
T ss_pred eCcCCCccEEEeC
Confidence 6 34433444433
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.22 E-value=7.7e-10 Score=106.12 Aligned_cols=218 Identities=8% Similarity=-0.008 Sum_probs=151.0
Q ss_pred cCCeEEEEECCCCCeEEeEecC-----------------------------CCCCeEEEEEcCCCCeEEEEE-CCCcEEE
Q 014934 185 LGNCVYLWNACSSKVTKLCDLG-----------------------------IDDSVCSVGWANRNTHLAVGT-SHGKVQI 234 (415)
Q Consensus 185 ~d~~V~iwd~~~~~~~~~~~~~-----------------------------~~~~V~~v~~sp~g~~la~g~-~dg~V~i 234 (415)
.+|.|.+|++.+++..+.+..- |.........+|||++|++.. .++.|.+
T Consensus 19 ~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVav 98 (441)
T d1qnia2 19 HQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVAR 98 (441)
T ss_dssp TTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEE
T ss_pred CCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCCEEEE
Confidence 5789999999988876665320 112344455678999987765 6788999
Q ss_pred EECCCCeeeEEec-CCCccEEEEEee--CC--EEEEEeCCC-----------------cEEEEECCCCCccEEEeccccC
Q 014934 235 WDASRCKRVRTME-GHRLRVGALAWS--SS--LLSSGSRDK-----------------SILQRDIRAQEDFVSKLSGHKS 292 (415)
Q Consensus 235 wd~~~~~~~~~l~-~h~~~V~~l~~~--~~--~l~sgs~dg-----------------~I~iwd~~~~~~~~~~~~~h~~ 292 (415)
+|+.+++....+. .+...+..++++ ++ +++..+.+. .+..+|..+... ...+.. .+
T Consensus 99 IDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v-~~qI~v-~~ 176 (441)
T d1qnia2 99 IRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV-AWQVIV-DG 176 (441)
T ss_dssp EETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE-EEEEEE-SS
T ss_pred EECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee-eEEEec-CC
Confidence 9999998877665 356778889997 44 555555443 234577777663 333332 34
Q ss_pred CeEEEEEeCCCCEEEEEeCC-----------------------------------------CcEEEEECCCCceeEEecc
Q 014934 293 EVCGLKWSYDNRELASGGND-----------------------------------------NRLFVWNQHSTQPVLKYCE 331 (415)
Q Consensus 293 ~V~~l~~spdg~~lasg~~d-----------------------------------------g~I~iwd~~~~~~~~~~~~ 331 (415)
....+.|+|+|+++++.+.+ +.+.|++....+.+..+..
T Consensus 177 ~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPv 256 (441)
T d1qnia2 177 NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPV 256 (441)
T ss_dssp CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECC
T ss_pred CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeC
Confidence 57889999999998877643 3344444444555556654
Q ss_pred CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE------------EEEeeCCCCEEEEEECCCCCeEEEEEecC
Q 014934 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH------------LSCMDTGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 332 h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~------------~~~~~~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
.. ....++++|+|+++++++. .+++|.+||+.+.+. ....+.+-.....+|+++|+.+.+ .+.
T Consensus 257 gk-sPhGv~vSPDGkyl~~~~~--~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts--~~~ 331 (441)
T d1qnia2 257 PK-NPHGLNTSPDGKYFIANGK--LSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT--LFI 331 (441)
T ss_dssp BS-SCCCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEE--ETT
T ss_pred CC-CccCceECCCCCEEEEeCC--cCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEc--ccc
Confidence 43 3577999999998888887 899999999875221 122223444677899999976655 788
Q ss_pred CCcEEEEECC
Q 014934 400 QNQIIVWRYP 409 (415)
Q Consensus 400 dg~I~vw~~~ 409 (415)
|.+|..|++.
T Consensus 332 ds~v~kw~~~ 341 (441)
T d1qnia2 332 DSQVCKWNIA 341 (441)
T ss_dssp TTEEEEEEHH
T ss_pred cceEEEeccc
Confidence 9999999974
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.4e-08 Score=90.49 Aligned_cols=212 Identities=13% Similarity=0.123 Sum_probs=139.0
Q ss_pred eeEeecCC-CcEEEEEcC----CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC-CCcEEEE--ECCCCe
Q 014934 170 LNLVDWSS-HNVLAVGLG----NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HGKVQIW--DASRCK 241 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d----~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~-dg~V~iw--d~~~~~ 241 (415)
+...+||| ++.||...+ ..+++.+..++....+. .+.+......|+|+|+.++.... ++...++ ......
T Consensus 41 ~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~ 118 (269)
T d2hqsa1 41 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 118 (269)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred eeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe--eeecccccceecCCCCeeeEeeecCCccceeeccccccc
Confidence 45678999 888887632 36888888888776655 45678899999999998887654 3333333 333333
Q ss_pred eeEEecCCCccEEEEEee--C-CEEEEEeCCCc--EEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC---
Q 014934 242 RVRTMEGHRLRVGALAWS--S-SLLSSGSRDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN--- 313 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~-~~l~sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg--- 313 (415)
... ............+. + ..+++...+|. |...++.... ...+..+........|+|+++.++..+.++
T Consensus 119 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~ 195 (269)
T d2hqsa1 119 IRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQ 195 (269)
T ss_dssp EEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCE
T ss_pred cee-eeeccccccccccccccccceecccccCCceEeeeeccccc--ceeeecccccccccccccccceeEEEeecCCce
Confidence 222 22233333333444 3 35555556665 4555555543 344555666778889999999988866544
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCC
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKN 388 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~ 388 (415)
.|.+.|...+.. ....+........|+|+|+.|+.+........|.++++..+...........+...+|||-
T Consensus 196 ~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 196 HIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp EEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred eeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence 455555555433 3445566778889999999887665422456799999998877665556667888999983
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.15 E-value=1e-09 Score=105.19 Aligned_cols=189 Identities=6% Similarity=0.019 Sum_probs=136.6
Q ss_pred EEEEECCCcEEEEECCCCeeeEEecC------------------------------CCccEEEEE--eeCCEEEEE-eCC
Q 014934 223 LAVGTSHGKVQIWDASRCKRVRTMEG------------------------------HRLRVGALA--WSSSLLSSG-SRD 269 (415)
Q Consensus 223 la~g~~dg~V~iwd~~~~~~~~~l~~------------------------------h~~~V~~l~--~~~~~l~sg-s~d 269 (415)
+++|+.+|.|.+|++.+++.+..+.- |........ .++++|++. ..+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 56777899999999999887777531 112233332 235666544 578
Q ss_pred CcEEEEECCCCCccEEEe-ccccCCeEEEEEeCCCC--EEEEEeCCC-----------------cEEEEECCCCceeEEe
Q 014934 270 KSILQRDIRAQEDFVSKL-SGHKSEVCGLKWSYDNR--ELASGGNDN-----------------RLFVWNQHSTQPVLKY 329 (415)
Q Consensus 270 g~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~spdg~--~lasg~~dg-----------------~I~iwd~~~~~~~~~~ 329 (415)
+.|.++|+++.+. ...+ ..+...+.+++|+|+|+ +++..+.+. .+..+|..+.+...++
T Consensus 94 ~rVavIDl~t~k~-~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 94 TRVARIRLDIMKT-DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TEEEEEETTTTEE-EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CEEEEEECCCCcE-eeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 8999999999873 3333 34677899999999998 454444432 2355888888877776
Q ss_pred ccCCCcEEEEEEcCCCCcEEEEEcCCC--------------------------------------CCeEEEEECCCCcEE
Q 014934 330 CEHTAAVKAIAWSPHLHGLLASGGGTA--------------------------------------DRCIRFWNTTTNTHL 371 (415)
Q Consensus 330 ~~h~~~V~~l~~sp~~~~llasggg~~--------------------------------------d~~I~iwd~~t~~~~ 371 (415)
... +....++|+|+|+++++++.++. ++.+.+++....+.+
T Consensus 173 ~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~ 251 (441)
T d1qnia2 173 IVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT 251 (441)
T ss_dssp EES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred ecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence 533 45788999999998888764211 355666666666777
Q ss_pred EEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 372 SCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 372 ~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
..+..+.....+.++|||++++++ |..+++|.|||+.+++++
T Consensus 252 ~~IPvgksPhGv~vSPDGkyl~~~-~~~~~tvsv~d~~k~~~~ 293 (441)
T d1qnia2 252 RYIPVPKNPHGLNTSPDGKYFIAN-GKLSPTVSVIAIDKLDDL 293 (441)
T ss_dssp EEECCBSSCCCEEECTTSCEEEEE-CTTSSBEEEEEGGGHHHH
T ss_pred EEEeCCCCccCceECCCCCEEEEe-CCcCCcEEEEEeehhhhH
Confidence 788777778889999999998876 788999999999887654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.12 E-value=8.7e-10 Score=103.65 Aligned_cols=207 Identities=9% Similarity=-0.010 Sum_probs=131.3
Q ss_pred eEeecCC-CcEEEEE--cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 171 NLVDWSS-HNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 171 ~~l~ws~-~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
..+.|+| ++.|+++ .++.|.+||+.+++............+ .+ ....++..+.||.+.+|++.........
T Consensus 127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~ 201 (368)
T d1mdah_ 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI-----HPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC-----EEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE-----ccCCCceEEEEcCCCCEEEEEecCCceeeee
Confidence 3578999 6666666 358999999999998888764322211 22 2234555566777777776544322211
Q ss_pred ------cCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEE-ecc----------ccCCeEEEEEeCCCCEEEEE
Q 014934 247 ------EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK-LSG----------HKSEVCGLKWSYDNRELASG 309 (415)
Q Consensus 247 ------~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~----------h~~~V~~l~~spdg~~lasg 309 (415)
..+...+..+.+.+...+.....+.++++++......... ... .......+++++++..++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~ 281 (368)
T d1mdah_ 202 VGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL 281 (368)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred eecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEE
Confidence 2233333444555333333344566677776654421111 000 11123457889998887664
Q ss_pred eCC---------CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCc-EEEEEcCCCCCeEEEEECCCCcEEEEeeCCCC
Q 014934 310 GND---------NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHG-LLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ 379 (415)
Q Consensus 310 ~~d---------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~-llasggg~~d~~I~iwd~~t~~~~~~~~~~~~ 379 (415)
..+ +.|.+||..+++.+..+. +...+.+++|+|+|+. +++++. .|+.|++||..+|+.+..+..+..
T Consensus 282 ~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~--~~~~v~v~D~~tgk~~~~i~~g~~ 358 (368)
T d1mdah_ 282 TVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSA--GTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp EEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEET--TTTEEEEEESSSCEEEEECCCCSC
T ss_pred ecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeC--CCCeEEEEECCCCCEEEEEECCCC
Confidence 322 359999999999887774 4567889999999975 566765 789999999999999999987665
Q ss_pred EEEEEE
Q 014934 380 VCNLVW 385 (415)
Q Consensus 380 V~~l~~ 385 (415)
-..|.+
T Consensus 359 P~~l~~ 364 (368)
T d1mdah_ 359 PESLSV 364 (368)
T ss_dssp CCEEEC
T ss_pred CCEEEE
Confidence 555554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.10 E-value=4e-08 Score=87.73 Aligned_cols=240 Identities=10% Similarity=0.009 Sum_probs=150.8
Q ss_pred ccCCCCCCCcceeEeecCC-CcEEEEEc--CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEE
Q 014934 159 LDAPALQDDFYLNLVDWSS-HNVLAVGL--GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIW 235 (415)
Q Consensus 159 ld~~~l~~~~~i~~l~ws~-~~~la~~~--d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iw 235 (415)
|....+.....-..|++++ +++.++.. .+.|..++....... ............++++++|.++++....+.++++
T Consensus 5 ~~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~ 83 (260)
T d1rwia_ 5 LPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLA 83 (260)
T ss_dssp CCCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEE-ECCCCSCCSCCCEEECTTCCEEEEETTTEEEEEC
T ss_pred EecccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE-EeccCCccCceEEEEcCCCCEEEeeeeeceeeee
Confidence 3333333344567888888 66555543 356676665444332 2222323456889999999987776666667666
Q ss_pred ECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC
Q 014934 236 DASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN 313 (415)
Q Consensus 236 d~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg 313 (415)
+-.+...+.... ......++++. ++++++-..+..+..++........ ..........+++++++++++++...++
T Consensus 84 ~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~~~v~~~~~~ 161 (260)
T d1rwia_ 84 AGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPFTGLNDPDGVAVDNSGNVYVTDTDNN 161 (260)
T ss_dssp TTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE-CCCCSCCSCCEEEECTTCCEEEEEGGGT
T ss_pred eeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeee-eeecccCCcceeeecCCCCEeeeccccc
Confidence 655554443333 23456788886 4666665566667777766544212 1112234567899999999988888889
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--CCCCEEEEEECCCCCe
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNE 391 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~ 391 (415)
.|..+|.............-.....|++.++|. |+++.. ..+.|..++...... ..+. .-....+++++++|+.
T Consensus 162 ~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~--~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l 237 (260)
T d1rwia_ 162 RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEH--NTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTV 237 (260)
T ss_dssp EEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEET--TTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCE
T ss_pred cccccccccceeeeeeccccCCCccceeeeeee-eeeeec--CCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCE
Confidence 999999876544333234556678999999986 777775 577888887654432 2222 2356789999999987
Q ss_pred EEEEEecCCCcEEEEE
Q 014934 392 LVSTHGYSQNQIIVWR 407 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~ 407 (415)
+++ ...++.|..++
T Consensus 238 ~va--d~~~~rI~~i~ 251 (260)
T d1rwia_ 238 YVA--DRGNDRVVKLT 251 (260)
T ss_dssp EEE--EGGGTEEEEEC
T ss_pred EEE--ECCCCEEEEEe
Confidence 776 44556555443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.08 E-value=2.7e-07 Score=83.11 Aligned_cols=233 Identities=9% Similarity=0.113 Sum_probs=157.0
Q ss_pred eeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEec-C----CCCCeEEEEEcCCC-CeEEEE-ECCCcEEEEECCCC
Q 014934 170 LNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-G----IDDSVCSVGWANRN-THLAVG-TSHGKVQIWDASRC 240 (415)
Q Consensus 170 i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~----~~~~V~~v~~sp~g-~~la~g-~~dg~V~iwd~~~~ 240 (415)
...|+.++ ++++++. ..+.|++||.+ ++....+.. . .......+++..+. .++++. +.++.|..++. .+
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g 102 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG 102 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-cc
Confidence 45677777 6666665 35789999865 555544421 1 11234566666554 344433 33456777775 45
Q ss_pred eeeEEec-CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEe--ccccCCeEEEEEeCCCCEEEEEeCCCcE
Q 014934 241 KRVRTME-GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKL--SGHKSEVCGLKWSYDNRELASGGNDNRL 315 (415)
Q Consensus 241 ~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~lasg~~dg~I 315 (415)
+....+. ........++.. +.++++....+.+.+++.... .+..+ ..+......+++.++++++++....+.|
T Consensus 103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~--~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V 180 (279)
T d1q7fa_ 103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 180 (279)
T ss_dssp CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc--eeecccccccccccceeeeccceeEEeeeccccce
Confidence 6565553 334556677776 566666666677888776433 34433 3455678899999999999998889999
Q ss_pred EEEECCCCceeEEec--cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC---CCCEEEEEECCCCC
Q 014934 316 FVWNQHSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSKNVN 390 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~---~~~V~~l~~s~~~~ 390 (415)
++||. +++.+.++. ++.....+|++.++|+ ++++-.+ .++.|.+|+ .+|+.+..+.. ......+++.++|.
T Consensus 181 ~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~-~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~ 256 (279)
T d1q7fa_ 181 KVFNY-EGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNH-NNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGS 256 (279)
T ss_dssp EEEET-TCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECS-SSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTE
T ss_pred eeeec-CCceeeeecccccccCCcccccccCCe-EEEEECC-CCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCc
Confidence 99997 456676763 3455688999999997 6665431 356799998 56888877753 34688999999997
Q ss_pred eEEEEEecCCCcEEEEECCCCcc
Q 014934 391 ELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 391 ~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.+++ . .++.|++|++.....
T Consensus 257 l~V~--~-~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 257 VVLA--S-KDYRLYIYRYVQLAP 276 (279)
T ss_dssp EEEE--E-TTTEEEEEECSCCCC
T ss_pred EEEE--e-CCCeEEEEEeeeecC
Confidence 5554 3 578999999988754
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=2.6e-07 Score=81.91 Aligned_cols=220 Identities=11% Similarity=0.039 Sum_probs=141.2
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC---cEEEEECCCCeeeEEecCCCccEEEEEee--CCE
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG---KVQIWDASRCKRVRTMEGHRLRVGALAWS--SSL 262 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg---~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~ 262 (415)
.|+|.|...+....+.. ....+.+-+|||||+.||...... .+.+.+...+.. ..+..+........|+ +..
T Consensus 20 ~l~i~d~dG~~~~~l~~--~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETTSCSCEEEEE--ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSE
T ss_pred EEEEEcCCCCCcEEEec--CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCe
Confidence 58898988777776664 457789999999999999876543 366666665544 3445577788888998 345
Q ss_pred EEEEe-CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe-CCC--cEEEEECCCCceeEEeccCCCcEEE
Q 014934 263 LSSGS-RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG-NDN--RLFVWNQHSTQPVLKYCEHTAAVKA 338 (415)
Q Consensus 263 l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~-~dg--~I~iwd~~~~~~~~~~~~h~~~V~~ 338 (415)
++... .++...++.......................+++++..++..+ .++ .|.+.++..+.. ..+..+......
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~ 175 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQD 175 (269)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEE
T ss_pred eeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccc
Confidence 54433 4444333333322222344444555566667888777655543 444 466667666543 344456677788
Q ss_pred EEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEe-cCCCcEEEEECCCCc
Q 014934 339 IAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHG-YSQNQIIVWRYPTMS 412 (415)
Q Consensus 339 l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g-~~dg~I~vw~~~s~~ 412 (415)
..|+|++..++..........|.+.+...+.. ..+..........|+|||+.|+.++. .....|.+|++....
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 249 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred cccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 89999999887776522233455566665554 33444556678899999999987532 123478888887653
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.01 E-value=7.7e-08 Score=90.42 Aligned_cols=240 Identities=7% Similarity=-0.005 Sum_probs=144.6
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCC-CCeEEeEecCCCCCeEEEEEcCCCCeEEEEE---CCCcEEEEECCCC-e--
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACS-SKVTKLCDLGIDDSVCSVGWANRNTHLAVGT---SHGKVQIWDASRC-K-- 241 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~-~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~---~dg~V~iwd~~~~-~-- 241 (415)
+..|++++ ++.|.+...+.+..|.+.. +................+.++++++.+.+.. ..+.|..+.+... .
T Consensus 42 ~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~ 121 (365)
T d1jofa_ 42 ISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG 121 (365)
T ss_dssp CSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred CCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcc
Confidence 34578888 7777777777777776553 2233222222334567788899988443322 2455655543211 0
Q ss_pred -------------eeEEe-cCCCccEEEEEee--CCEEEEEeC-CCcEEEEECCCCCccE--EEe--ccccCCeEEEEEe
Q 014934 242 -------------RVRTM-EGHRLRVGALAWS--SSLLSSGSR-DKSILQRDIRAQEDFV--SKL--SGHKSEVCGLKWS 300 (415)
Q Consensus 242 -------------~~~~l-~~h~~~V~~l~~~--~~~l~sgs~-dg~I~iwd~~~~~~~~--~~~--~~h~~~V~~l~~s 300 (415)
..... ......+.++.|+ ++++++++. ...|.+|+........ ... .........++|+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~ 201 (365)
T d1jofa_ 122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH 201 (365)
T ss_dssp EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC
T ss_pred eeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEEC
Confidence 01111 1122346789998 466666653 4578888766543221 111 1234578899999
Q ss_pred CCCCEEEEE-eCCCcEEEEECCCCceeE--Eec-----------------cCCCcEEEEEEcCCCCcEEEEEcCC---CC
Q 014934 301 YDNRELASG-GNDNRLFVWNQHSTQPVL--KYC-----------------EHTAAVKAIAWSPHLHGLLASGGGT---AD 357 (415)
Q Consensus 301 pdg~~lasg-~~dg~I~iwd~~~~~~~~--~~~-----------------~h~~~V~~l~~sp~~~~llasggg~---~d 357 (415)
|+++++.+. -.+++|.+|++...+... ... .+......+.++|+|++++++.-+. ..
T Consensus 202 pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~ 281 (365)
T d1jofa_ 202 PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQ 281 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSC
T ss_pred CCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccc
Confidence 999988654 467899999987654321 110 1122356789999999888875321 12
Q ss_pred CeEEEEECCCCcEEE---Ee----eCCCCEEEEEECC-CCCeEEEEEecCCCcEEEEECCC
Q 014934 358 RCIRFWNTTTNTHLS---CM----DTGSQVCNLVWSK-NVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 358 ~~I~iwd~~t~~~~~---~~----~~~~~V~~l~~s~-~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
..|..|++.....+. .+ ..+....+++++| +|++|+++ +..++.|.+|++..
T Consensus 282 ~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va-~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 282 GYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT-DDQEGWLEIYRWKD 341 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE-CSSSCEEEEEEEET
T ss_pred eEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEE-eCCCCeEEEEEEeC
Confidence 347777765432221 11 1355678899998 79988886 56789999998753
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.99 E-value=4.4e-07 Score=83.24 Aligned_cols=234 Identities=9% Similarity=0.075 Sum_probs=149.4
Q ss_pred eeEeecCC-CcEEEEEc--------CCeEEEEECCCCCeEEeEec---CCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC
Q 014934 170 LNLVDWSS-HNVLAVGL--------GNCVYLWNACSSKVTKLCDL---GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA 237 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~--------d~~V~iwd~~~~~~~~~~~~---~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~ 237 (415)
...++|.+ ++++.+.. ++.|+.||..+++....... ........+.|.++|+.|+++...+.|..+|.
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~ 99 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT 99 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence 45678888 67666653 35799999988876554421 11234678999999998888887777888897
Q ss_pred CCCeeeEEecCCC----ccEEEEEee--CCEEEEEeC---------------CCcEEEEECCCCCccEEEeccccCCeEE
Q 014934 238 SRCKRVRTMEGHR----LRVGALAWS--SSLLSSGSR---------------DKSILQRDIRAQEDFVSKLSGHKSEVCG 296 (415)
Q Consensus 238 ~~~~~~~~l~~h~----~~V~~l~~~--~~~l~sgs~---------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 296 (415)
............. ...+.+++. +++.++-.. +|.|+.++... . ...+...-..-++
T Consensus 100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg--~-~~~~~~~~~~pNG 176 (314)
T d1pjxa_ 100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG--Q-MIQVDTAFQFPNG 176 (314)
T ss_dssp TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS--C-EEEEEEEESSEEE
T ss_pred CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC--c-eeEeeCCcceeee
Confidence 6543222111111 124566666 344444211 22344444322 1 2222233344578
Q ss_pred EEEeCCCC-----EEEEEeCCCcEEEEECCCCceeE------Eecc-CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE
Q 014934 297 LKWSYDNR-----ELASGGNDNRLFVWNQHSTQPVL------KYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 297 l~~spdg~-----~lasg~~dg~I~iwd~~~~~~~~------~~~~-h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd 364 (415)
++|+|++. ++++-+..+.|..||+.....+. .+.. +......+++..+|+ |+++.. ..+.|.+||
T Consensus 177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~--~~g~I~~~d 253 (314)
T d1pjxa_ 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANW--GSSHIEVFG 253 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEE--TTTEEEEEC
T ss_pred eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEc--CCCEEEEEe
Confidence 99999875 44555678889999876432221 2222 233467899999997 665543 478999999
Q ss_pred CCCCcEEEEeeC-CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 365 TTTNTHLSCMDT-GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 365 ~~t~~~~~~~~~-~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
..+++.+..+.. ....++++|.++++.|..+ ....|.|...+++.
T Consensus 254 p~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt-~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 254 PDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT-EHENNAVWKFEWQR 299 (314)
T ss_dssp TTCBSCSEEEECSSSCEEEEEECTTSSEEEEE-ETTTTEEEEEECSS
T ss_pred CCCCEEEEEEECCCCCEEEEEEeCCCCEEEEE-ECCCCcEEEEECCC
Confidence 998887777765 4678999999999877665 45678888888753
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.97 E-value=1.8e-06 Score=79.12 Aligned_cols=224 Identities=8% Similarity=0.075 Sum_probs=145.1
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC----CCcEEEEECCCC
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS----HGKVQIWDASRC 240 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~----dg~V~iwd~~~~ 240 (415)
.+.+..+.|.+ +++..+. .++.|+.|+..+++...... ........+++.++|+++++... .+.|...+....
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe-CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence 45678899998 6766666 56899999998877665553 44567899999999987776543 234555555554
Q ss_pred eeeEEecC--CCccEEEEEee--CCEEEEEeC------CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEE-EE
Q 014934 241 KRVRTMEG--HRLRVGALAWS--SSLLSSGSR------DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELA-SG 309 (415)
Q Consensus 241 ~~~~~l~~--h~~~V~~l~~~--~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-sg 309 (415)
........ -......+++. +++.++... .+.+..++..... +..+...-...++|+|+|+++.|. +-
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~--~~~~~~~~~~pnGia~s~dg~~lyvad 195 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVTE 195 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce--eEEEeeccceeeeeeeccccceEEEec
Confidence 43333322 13356777776 444444322 1235555544332 333333334568899999998664 44
Q ss_pred eCCCcEEEEECCCC-ceeEE-------eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC----
Q 014934 310 GNDNRLFVWNQHST-QPVLK-------YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG---- 377 (415)
Q Consensus 310 ~~dg~I~iwd~~~~-~~~~~-------~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~---- 377 (415)
+..++|..||+... ..... ..........+++.++|+ |+++.. ..+.|.+||. .|+.+..+...
T Consensus 196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~--~~g~V~~~~p-~G~~l~~i~~P~~~~ 271 (319)
T d2dg1a1 196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMY--GQGRVLVFNK-RGYPIGQILIPGRDE 271 (319)
T ss_dssp GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEE--TTTEEEEECT-TSCEEEEEECTTGGG
T ss_pred ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEc--CCCEEEEECC-CCcEEEEEeCCCcCC
Confidence 56789999997643 21111 111223457899999997 666554 5899999995 79998888632
Q ss_pred ---CCEEEEEECCCCCeEEEEEe
Q 014934 378 ---SQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 378 ---~~V~~l~~s~~~~~l~s~~g 397 (415)
..+++++|.+.+..++++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 272 GHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp TCSCBCCEEEECTTSCEEEEEEE
T ss_pred CcCceeeeEEEeCCCCEEEEEcC
Confidence 35789999998888877643
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.95 E-value=3.2e-09 Score=103.15 Aligned_cols=145 Identities=16% Similarity=0.140 Sum_probs=105.3
Q ss_pred EEEee-CCEEEEEeCCCcEEEEECCCCCccEEEe-----ccccCCeEEEEEeCCCCEEEEEeC---------CCcEEEEE
Q 014934 255 ALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKL-----SGHKSEVCGLKWSYDNRELASGGN---------DNRLFVWN 319 (415)
Q Consensus 255 ~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~-----~~h~~~V~~l~~spdg~~lasg~~---------dg~I~iwd 319 (415)
.+.|. +..++. ..|+.|.+||+.++.. ...+ ..|...|.++.|||||++||.+++ ++.+.|||
T Consensus 21 ~~~W~~d~~~~~-~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLY-KQENNILVFNAEYGNS-SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEE-ESSSCEEEEETTTCCE-EEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEE-EcCCcEEEEECCCCCE-EEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 35565 233333 4578899999999874 3333 345578999999999999998754 56789999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC-------------------CCE
Q 014934 320 QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-------------------SQV 380 (415)
Q Consensus 320 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-------------------~~V 380 (415)
+.+++. ..+..|...+..+.|+|+|+.++.. .++.+.+|+..+++..+....+ +..
T Consensus 99 ~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~----~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~ 173 (470)
T d2bgra1 99 LNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV----WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (470)
T ss_dssp TTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE----ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred CCCCcc-cccccCCccccccccccCcceeeEe----ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence 998864 5677899999999999999966654 3788999999998876544211 224
Q ss_pred EEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 381 CNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 381 ~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
..+.|||||+.|+... ..+..+..|.
T Consensus 174 ~~~~wSPDGk~ia~~~-~d~~~v~~~~ 199 (470)
T d2bgra1 174 SALWWSPNGTFLAYAQ-FNDTEVPLIE 199 (470)
T ss_dssp BCEEECTTSSEEEEEE-EECTTCCEEE
T ss_pred cccEECCCCCccceeE-ecCCcCceEE
Confidence 5578999999999863 2333344444
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.85 E-value=1.9e-06 Score=78.15 Aligned_cols=220 Identities=9% Similarity=0.038 Sum_probs=145.3
Q ss_pred cceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe-eeE
Q 014934 168 FYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-RVR 244 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~-~~~ 244 (415)
.++..+++++ ++++++.. ++.|+.|+.. ++...... ....+.+++|+++|+++++...++.+.+|+..... ...
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~--~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEc--CCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence 3577899999 78887774 6889999865 44444443 45789999999999999998888888888764321 111
Q ss_pred Ee--cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec---------cccCCeEEEEEeCCCCEEEEEeC
Q 014934 245 TM--EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS---------GHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 245 ~l--~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---------~h~~~V~~l~~spdg~~lasg~~ 311 (415)
.+ .........+++. ++++++-+.++.+..+|.......+.... .......++.++. +.++++.+.
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~ 183 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTE 183 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETT
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCC
Confidence 11 1234567888886 56677777888898888877652222211 1122456777763 345566677
Q ss_pred CCcEEEEECCCCceeEE--eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe--e-CCCCEEEEEE-
Q 014934 312 DNRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--D-TGSQVCNLVW- 385 (415)
Q Consensus 312 dg~I~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~--~-~~~~V~~l~~- 385 (415)
.+.|+.++......... ..........+++.++|. ++++.. .++.|..++.. |+..... . .....++++|
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~--~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg 259 (302)
T d2p4oa1 184 KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATH--IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG 259 (302)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECB--TTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred CCeEEeccccccccccccccccCCCCCcceEECCCCC-EEEEEc--CCCcEEEECCC-CCEEEEEecCCCCCCceEEEEc
Confidence 88899998765432211 112233456799999997 666654 57889988765 4432222 2 3356899999
Q ss_pred --CCCCCeEEEE
Q 014934 386 --SKNVNELVST 395 (415)
Q Consensus 386 --s~~~~~l~s~ 395 (415)
++|++.|.++
T Consensus 260 ~~~~D~~~Lyvt 271 (302)
T d2p4oa1 260 QTEGDCTAIYVV 271 (302)
T ss_dssp CSTTTTTEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 6788888764
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.81 E-value=3.9e-07 Score=82.95 Aligned_cols=194 Identities=10% Similarity=0.037 Sum_probs=137.8
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEE
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVS 285 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~ 285 (415)
...+..++++|||+++++...+++|..||.... ...+......+.+++|. ++++++...++.+..++.........
T Consensus 27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 27 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence 346889999999999999888999988886533 33444566789999998 57888888888888888765443233
Q ss_pred Eec--cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec----------cCCCcEEEEEEcCCCCcEEEEEc
Q 014934 286 KLS--GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC----------EHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 286 ~~~--~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~----------~h~~~V~~l~~sp~~~~llasgg 353 (415)
.+. ........+.+.++++++++-+.++.+..+|...+....... .....+..+.+. +..++++..
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~ 182 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT 182 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence 322 344568899999999999998899999999988764332221 112345666665 445777765
Q ss_pred CCCCCeEEEEECCCCcEEE---EeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 354 GTADRCIRFWNTTTNTHLS---CMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 354 g~~d~~I~iwd~~t~~~~~---~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
..+.|..++........ ..........++++++|+.+++ ...+++|..++..
T Consensus 183 --~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va--~~~~~~V~~i~p~ 237 (302)
T d2p4oa1 183 --EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA--THIYNSVVRIAPD 237 (302)
T ss_dssp --TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE--CBTTCCEEEECTT
T ss_pred --CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEE--EcCCCcEEEECCC
Confidence 68899988876543222 2223445667999999997777 5567888888754
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.69 E-value=7.6e-06 Score=76.34 Aligned_cols=222 Identities=9% Similarity=0.025 Sum_probs=125.9
Q ss_pred CCeEEE--EECCCCCeEE--eEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecC--CCccEEEEEee
Q 014934 186 GNCVYL--WNACSSKVTK--LCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG--HRLRVGALAWS 259 (415)
Q Consensus 186 d~~V~i--wd~~~~~~~~--~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~--h~~~V~~l~~~ 259 (415)
.+.|+. +|.+++++.. .........+..|+|++++++|.+... +.+..|.+.....+..... .......++++
T Consensus 13 ~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~ 91 (365)
T d1jofa_ 13 PGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDAD 91 (365)
T ss_dssp SCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTT
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEEC
Confidence 456765 4555555432 223344556778999999999887754 5677887653221211110 11112223333
Q ss_pred --CCE--EEEEe-CCCcEEEEECC------------CCCccE----EEeccccCCeEEEEEeCCCCEEEEEeC-CCcEEE
Q 014934 260 --SSL--LSSGS-RDKSILQRDIR------------AQEDFV----SKLSGHKSEVCGLKWSYDNRELASGGN-DNRLFV 317 (415)
Q Consensus 260 --~~~--l~sgs-~dg~I~iwd~~------------~~~~~~----~~~~~h~~~V~~l~~spdg~~lasg~~-dg~I~i 317 (415)
++. +++.. ..+.|..+.+. ...... .........+.++.|+|||++|++++. .+.|.+
T Consensus 92 ~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~ 171 (365)
T d1jofa_ 92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWT 171 (365)
T ss_dssp SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEE
Confidence 221 22221 23344443322 111110 011112234789999999998888764 457888
Q ss_pred EECCCCceeE---Ee--ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE--EEEee---------------
Q 014934 318 WNQHSTQPVL---KY--CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH--LSCMD--------------- 375 (415)
Q Consensus 318 wd~~~~~~~~---~~--~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~--~~~~~--------------- 375 (415)
|+......+. .. .........++|+|+++.++++.. .++.|.+|++..++. +....
T Consensus 172 ~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e--~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (365)
T d1jofa_ 172 HRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPE 249 (365)
T ss_dssp EEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTT
T ss_pred EEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc--CCCEEEEEEecCCCceEEEEeeeeccccccccccccc
Confidence 8765432221 11 124567899999999998888876 799999999876542 22211
Q ss_pred ---CCCCEEEEEECCCCCeEEEEEecCC----CcEEEEECCC
Q 014934 376 ---TGSQVCNLVWSKNVNELVSTHGYSQ----NQIIVWRYPT 410 (415)
Q Consensus 376 ---~~~~V~~l~~s~~~~~l~s~~g~~d----g~I~vw~~~s 410 (415)
.......+.++|+|++|+++....+ ..|..|++..
T Consensus 250 ~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~ 291 (365)
T d1jofa_ 250 TGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp TSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred cccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecC
Confidence 0112567899999999988643222 2377777654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.66 E-value=6e-06 Score=75.54 Aligned_cols=197 Identities=8% Similarity=0.046 Sum_probs=128.3
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeC----CCcEEEEECCCCCc
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSR----DKSILQRDIRAQED 282 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~----dg~I~iwd~~~~~~ 282 (415)
..+..++|.++|++.++-...|.|..|+....+....+.........|++. ++++++... .+.|...+.....
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~- 118 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN- 118 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce-
Confidence 345689999999977777788999999988776555555556678889987 455555432 2334555554443
Q ss_pred cEEEecc--ccCCeEEEEEeCCCCEEEEEeC------CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcC
Q 014934 283 FVSKLSG--HKSEVCGLKWSYDNRELASGGN------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGG 354 (415)
Q Consensus 283 ~~~~~~~--h~~~V~~l~~spdg~~lasg~~------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg 354 (415)
....... -......+++.++|++.++... .+.+..++...+ .+..+...-...+.++|+|+++.|+++-.
T Consensus 119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~- 196 (319)
T d2dg1a1 119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTET- 196 (319)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEG-
T ss_pred eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEecc-
Confidence 2222221 1234788999999997776432 233665665433 33333333445688999999987888766
Q ss_pred CCCCeEEEEECCCC-cEEEEe--------eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 355 TADRCIRFWNTTTN-THLSCM--------DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 355 ~~d~~I~iwd~~t~-~~~~~~--------~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
..+.|..|++... ...... ........+++..+|+..++ ....+.|.+|+ +.++
T Consensus 197 -~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va--~~~~g~V~~~~-p~G~ 259 (319)
T d2dg1a1 197 -TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA--MYGQGRVLVFN-KRGY 259 (319)
T ss_dssp -GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEE--EETTTEEEEEC-TTSC
T ss_pred -cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEE--EcCCCEEEEEC-CCCc
Confidence 6889999997642 221111 11223568999999998777 45688999998 4554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.61 E-value=6.8e-05 Score=67.49 Aligned_cols=217 Identities=11% Similarity=0.040 Sum_probs=142.2
Q ss_pred eEeecCC--CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 171 NLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 171 ~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
....|++ +.+.-+- ..+.|+.||..+++.. .+.+ ...+.++++.++|.+++ ++.+ .|.++|..+++......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~--~~~~~~i~~~~dg~l~v-a~~~-gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL--PFMGSALAKISDSKQLI-ASDD-GLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC--SSCEEEEEEEETTEEEE-EETT-EEEEEETTTCCEEEEEC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC--CCCcEEEEEecCCCEEE-EEeC-ccEEeecccceeeEEee
Confidence 3566886 4454444 4689999999988754 3433 45789999999987665 4555 48899999886543322
Q ss_pred --C--CCccEEEEEee--CCEEEEEeC----CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEE-EeCCCcEE
Q 014934 248 --G--HRLRVGALAWS--SSLLSSGSR----DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELAS-GGNDNRLF 316 (415)
Q Consensus 248 --~--h~~~V~~l~~~--~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-g~~dg~I~ 316 (415)
. ....+..+.+. +++.++... .+.-.+|.+..+. +..+...-..-.+++|+++++.|.. -+..+.|+
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~--~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~ 173 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK--VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM 173 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE--EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc--EEEEeeccCCcceeeecCCCceEEEeecccceee
Confidence 1 22357777776 344443322 2334556655543 2233333345688999999987654 45677899
Q ss_pred EEECCCC------ce--eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC-CCEEEEEEC-
Q 014934 317 VWNQHST------QP--VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQVCNLVWS- 386 (415)
Q Consensus 317 iwd~~~~------~~--~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-~~V~~l~~s- 386 (415)
.|++... +. ...+.+..+....+++..+|+ |.++.- ..+.|..|| ..|+.+..+... ..+++++|-
T Consensus 174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~--~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG 249 (295)
T d2ghsa1 174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARW--GEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIG 249 (295)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEE--TTTEEEEEC-TTCCEEEEEECSCSBEEEEEEES
T ss_pred EeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeee--CCCceEEec-CCCcEeeEecCCCCceEEEEEeC
Confidence 8886421 11 122334556688999999997 555432 367899999 578899998864 569999995
Q ss_pred CCCCeEEEEEec
Q 014934 387 KNVNELVSTHGY 398 (415)
Q Consensus 387 ~~~~~l~s~~g~ 398 (415)
++.+.|..|++.
T Consensus 250 ~d~~~LyvTta~ 261 (295)
T d2ghsa1 250 PDASRLLVTSAR 261 (295)
T ss_dssp TTSCEEEEEEBC
T ss_pred CCCCEEEEEECC
Confidence 788888776553
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.55 E-value=9.8e-06 Score=71.64 Aligned_cols=191 Identities=8% Similarity=0.001 Sum_probs=123.3
Q ss_pred eeEeecCC-CcEEEEEcCC-eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 170 LNLVDWSS-HNVLAVGLGN-CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~-~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
...+++++ ++++++...+ .+++++..+... ...........++++.++|+++++-..+..+..++...........
T Consensus 59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~--~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~ 136 (260)
T d1rwia_ 59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT--VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF 136 (260)
T ss_dssp CCCEEECTTCCEEEEETTTEEEEECTTCSCCE--ECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC
T ss_pred ceEEEEcCCCCEEEeeeeeceeeeeeecccee--eeeeeeeeecccccccccceeEeeccccccccccccccceeeeeee
Confidence 45667777 6666666554 455554433332 2322334678999999999987776666677777765433222111
Q ss_pred CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q 014934 248 GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP 325 (415)
Q Consensus 248 ~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~ 325 (415)
.......+++++ ++++++...++.|..+|...... ............+|++.++|+++++....+.|..++......
T Consensus 137 ~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~ 215 (260)
T d1rwia_ 137 TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 215 (260)
T ss_dssp CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC
T ss_pred cccCCcceeeecCCCCEeeecccccccccccccccee-eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE
Confidence 222334567776 57777778888899999876542 222234456678999999999988888888999888755432
Q ss_pred eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 326 VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 326 ~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
.......-....+|++.++|. |+++-. .++.|+.++..
T Consensus 216 ~~~~~~~~~~P~~i~~d~~g~-l~vad~--~~~rI~~i~~~ 253 (260)
T d1rwia_ 216 TVLPFTGLNTPLAVAVDSDRT-VYVADR--GNDRVVKLTSL 253 (260)
T ss_dssp EECCCCSCCCEEEEEECTTCC-EEEEEG--GGTEEEEECCC
T ss_pred EEEccCCCCCeEEEEEeCCCC-EEEEEC--CCCEEEEEeCC
Confidence 222123335678999999986 777655 46777766554
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=2.5e-06 Score=82.46 Aligned_cols=219 Identities=13% Similarity=0.103 Sum_probs=133.6
Q ss_pred ecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCC--CCCeEEEEEcCCCCeEEEEEC---------CCcEEEEECCCCe
Q 014934 174 DWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGI--DDSVCSVGWANRNTHLAVGTS---------HGKVQIWDASRCK 241 (415)
Q Consensus 174 ~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~--~~~V~~v~~sp~g~~la~g~~---------dg~V~iwd~~~~~ 241 (415)
.|.+ +.++....++.|.+||+.+++...++.... .-.+....|||||++++.... .|.+.++|+.++.
T Consensus 23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~ 102 (465)
T d1xfda1 23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD 102 (465)
T ss_dssp CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence 4666 344444456789999999988765554321 235778889999999888743 5678999998876
Q ss_pred eeEE--ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCe-----------------EEEEEe
Q 014934 242 RVRT--MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV-----------------CGLKWS 300 (415)
Q Consensus 242 ~~~~--l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----------------~~l~~s 300 (415)
.... .......+....|+ ++.|+-.. ++.|++.+...+.....+..+....| .++.||
T Consensus 103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WS 181 (465)
T d1xfda1 103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS 181 (465)
T ss_dssp CEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred eeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEEC
Confidence 4332 22234455567787 45665543 66788888876653222222222222 478899
Q ss_pred CCCCEEEEEeCC-C---------------------------------cEEEEECCCCceeEEec------cCCCcEEEEE
Q 014934 301 YDNRELASGGND-N---------------------------------RLFVWNQHSTQPVLKYC------EHTAAVKAIA 340 (415)
Q Consensus 301 pdg~~lasg~~d-g---------------------------------~I~iwd~~~~~~~~~~~------~h~~~V~~l~ 340 (415)
|||++||....| . .+.|+|+.++....... .....+..+.
T Consensus 182 PDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~ 261 (465)
T d1xfda1 182 PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK 261 (465)
T ss_dssp TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE
T ss_pred CCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeE
Confidence 999999986422 2 24455554433221111 1222467899
Q ss_pred EcCCCCcEEEEEcCC-CCCeEEEEECCCCcEEEEee--CCCC----EEEEEECCCCCeEE
Q 014934 341 WSPHLHGLLASGGGT-ADRCIRFWNTTTNTHLSCMD--TGSQ----VCNLVWSKNVNELV 393 (415)
Q Consensus 341 ~sp~~~~llasggg~-~d~~I~iwd~~t~~~~~~~~--~~~~----V~~l~~s~~~~~l~ 393 (415)
|+|+++.++...... ....|.++|..+|++...+. .... -....|+++|+.++
T Consensus 262 W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~ 321 (465)
T d1xfda1 262 WATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF 321 (465)
T ss_dssp ESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred EcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeE
Confidence 999987444433311 22468899999998765443 2222 23468999998654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.54 E-value=2.8e-05 Score=69.30 Aligned_cols=183 Identities=11% Similarity=0.136 Sum_probs=129.8
Q ss_pred CcEEEEEc--CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe--cCCCccE
Q 014934 178 HNVLAVGL--GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM--EGHRLRV 253 (415)
Q Consensus 178 ~~~la~~~--d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l--~~h~~~V 253 (415)
+..+++.. .+.|..++. .++....+..........+++.++|.++++....+.+.+++.. ++.+..+ ..+....
T Consensus 82 ~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~ 159 (279)
T d1q7fa_ 82 GDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFP 159 (279)
T ss_dssp TEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSE
T ss_pred cccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccccccccccc
Confidence 44555442 357777775 4565555544555678899999999988887777888888854 5556655 3455677
Q ss_pred EEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec--cccCCeEEEEEeCCCCEEEEEeC-CCcEEEEECCCCceeEE
Q 014934 254 GALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS--GHKSEVCGLKWSYDNRELASGGN-DNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 254 ~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~lasg~~-dg~I~iwd~~~~~~~~~ 328 (415)
..+++. ++++++....+.|++||.... .+..+. +......+|++.++|+++++-.. ++.|.+|+. +++.+..
T Consensus 160 ~~i~~d~~g~i~v~d~~~~~V~~~d~~G~--~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~ 236 (279)
T d1q7fa_ 160 NGVVVNDKQEIFISDNRAHCVKVFNYEGQ--YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISA 236 (279)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETTCC--EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEE
T ss_pred ceeeeccceeEEeeeccccceeeeecCCc--eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEE
Confidence 788877 467777788889999997543 344442 34456789999999998877543 457999984 6777766
Q ss_pred ecc--CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc
Q 014934 329 YCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (415)
Q Consensus 329 ~~~--h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~ 369 (415)
+.. .......|++.|+|. |+++. .+..|++|......
T Consensus 237 ~~~~~~~~~p~~vav~~dG~-l~V~~---~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 237 LESKVKHAQCFDVALMDDGS-VVLAS---KDYRLYIYRYVQLA 275 (279)
T ss_dssp EEESSCCSCEEEEEEETTTE-EEEEE---TTTEEEEEECSCCC
T ss_pred EeCCCCCCCEeEEEEeCCCc-EEEEe---CCCeEEEEEeeeec
Confidence 643 234578999999986 66655 47899999987654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.51 E-value=1.8e-05 Score=69.65 Aligned_cols=222 Identities=7% Similarity=-0.005 Sum_probs=123.4
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC-CC-----cEEEEECCCCeeeEEecC---
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HG-----KVQIWDASRCKRVRTMEG--- 248 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~-dg-----~V~iwd~~~~~~~~~l~~--- 248 (415)
++.||...++.|++.|+.+++..++. .+.+.+...+|||||++||.... ++ .|.+++..+++.......
T Consensus 12 G~~v~f~~~~dl~~~d~~~g~~~~Lt--~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~ 89 (281)
T d1k32a2 12 GDRIIFVCCDDLWEHDLKSGSTRKIV--SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK 89 (281)
T ss_dssp TTEEEEEETTEEEEEETTTCCEEEEE--CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE
T ss_pred CCEEEEEeCCcEEEEECCCCCEEEEe--cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCC
Confidence 56777777889999999999987765 45577899999999999987643 22 377777777765432211
Q ss_pred ---CCccEEEEEee--CCEEEEEeCC------CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC----
Q 014934 249 ---HRLRVGALAWS--SSLLSSGSRD------KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN---- 313 (415)
Q Consensus 249 ---h~~~V~~l~~~--~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg---- 313 (415)
.........|+ ++.|+..... ..+...+..... .... +......+.+.+.+..++....+.
T Consensus 90 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (281)
T d1k32a2 90 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN--FVPL--NLGPATHILFADGRRVIGRNTFELPHWK 165 (281)
T ss_dssp EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE--EEEC--CSCSCSEEEEETTEEEEEESCSCCTTST
T ss_pred ccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce--eEEe--cCCccceeeecCCCeEEEeeccccceee
Confidence 11233456676 4555554322 123444444332 2221 222233333333333333322211
Q ss_pred -------cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEEC
Q 014934 314 -------RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWS 386 (415)
Q Consensus 314 -------~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s 386 (415)
...++....... .....+........++++ .++..........|.++|+.+++...... ........|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt~-~~~~~~~~~S 241 (281)
T d1k32a2 166 GYRGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTS-FTDYYPRHLN 241 (281)
T ss_dssp TCCSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCC-CCSSCEEEEE
T ss_pred eeccCCcceeeeeccccce-eeccCCccccceeeeecc--ccceecccccccceEEEeCCCCceEEeec-CCCcccccCc
Confidence 111222222222 222234444555666665 34444432235568888988776544322 2222335689
Q ss_pred CCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 387 KNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 387 ~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
|||+.|+.. .++.|+++|+.+++
T Consensus 242 pDG~~I~f~---~~~~l~~~d~~~g~ 264 (281)
T d1k32a2 242 TDGRRILFS---KGGSIYIFNPDTEK 264 (281)
T ss_dssp ESSSCEEEE---ETTEEEEECTTTCC
T ss_pred CCCCEEEEE---eCCEEEEEECCCCC
Confidence 999999874 35789999988765
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.45 E-value=2.3e-05 Score=71.36 Aligned_cols=193 Identities=10% Similarity=0.135 Sum_probs=126.7
Q ss_pred eeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCC----CeEEEEEcCCCCeEEEEEC---------------
Q 014934 170 LNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDD----SVCSVGWANRNTHLAVGTS--------------- 228 (415)
Q Consensus 170 i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~----~V~~v~~sp~g~~la~g~~--------------- 228 (415)
-+.+.+++ ++.|.++ ..+.|..++..++....... ...+ ....+++.++|.+.++-..
T Consensus 73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~-~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~ 151 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKK-DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSB-CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEec-cccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence 46788888 5655555 45678889976654332222 2111 3578999999987765321
Q ss_pred CCcEEEEECCCCeeeEEecCCCccEEEEEeeC--C-----EEEEEeCCCcEEEEECCCCCccE-----EEecc-ccCCeE
Q 014934 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--S-----LLSSGSRDKSILQRDIRAQEDFV-----SKLSG-HKSEVC 295 (415)
Q Consensus 229 dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~-----~l~sgs~dg~I~iwd~~~~~~~~-----~~~~~-h~~~V~ 295 (415)
.|.|..++.. ++..... ..-..-+.++|++ + ++++-+..+.|..||+....... ..+.+ +.....
T Consensus 152 ~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd 229 (314)
T d1pjxa_ 152 FGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 229 (314)
T ss_dssp CEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred CceEEEEeec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence 2334444432 3322222 2223346778862 2 44555678889999886543221 11111 223457
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 296 GLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 296 ~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t 367 (415)
+|++..+|+++++....+.|.+||...++.+..+..+...+.+++|.|+++.|+++.+ .++.|..+++..
T Consensus 230 GiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~--~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH--ENNAVWKFEWQR 299 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET--TTTEEEEEECSS
T ss_pred eeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEEC--CCCcEEEEECCC
Confidence 8999999999888888899999999888877777766778899999999887888876 688888888753
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=5.9e-05 Score=72.51 Aligned_cols=244 Identities=13% Similarity=0.152 Sum_probs=140.1
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCe-----------------EEEEEcCCCCeEEEEEC-CC
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSV-----------------CSVGWANRNTHLAVGTS-HG 230 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V-----------------~~v~~sp~g~~la~g~~-dg 230 (415)
+....||| ++.||...++.|++.+..++...++..-+..+.| .++-|||||++||.... +.
T Consensus 116 l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s 195 (465)
T d1xfda1 116 LQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS 195 (465)
T ss_dssp CSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT
T ss_pred cceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEeccc
Confidence 45678999 8899999999999999988877766643322222 46789999999998753 22
Q ss_pred cE---------------------------------EEEECCCCeeeEEec------CCCccEEEEEeeC-CEEEEE--eC
Q 014934 231 KV---------------------------------QIWDASRCKRVRTME------GHRLRVGALAWSS-SLLSSG--SR 268 (415)
Q Consensus 231 ~V---------------------------------~iwd~~~~~~~~~l~------~h~~~V~~l~~~~-~~l~sg--s~ 268 (415)
.| .++|+..+....... .....+..+.|.+ ..++.. .+
T Consensus 196 ~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR 275 (465)
T d1xfda1 196 RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR 275 (465)
T ss_dssp TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET
T ss_pred ccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEcc
Confidence 23 334443332111110 1223467788873 333322 33
Q ss_pred CC---cEEEEECCCCCccEEEec-cccCCe----EEEEEeCCCCEEEE--Ee-CCC--cEEEEECC------CCceeEEe
Q 014934 269 DK---SILQRDIRAQEDFVSKLS-GHKSEV----CGLKWSYDNRELAS--GG-NDN--RLFVWNQH------STQPVLKY 329 (415)
Q Consensus 269 dg---~I~iwd~~~~~~~~~~~~-~h~~~V----~~l~~spdg~~las--g~-~dg--~I~iwd~~------~~~~~~~~ 329 (415)
+. .|.++|..++.. ..... .....| ....|++||+.++. .+ .+| .++..++. .++.+..+
T Consensus 276 ~q~~~~i~~~d~~tg~~-~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~L 354 (465)
T d1xfda1 276 AQNVSILTLCDATTGVC-TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI 354 (465)
T ss_dssp TSCEEEEEEEETTTCCE-EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS
T ss_pred ccccceEEEEcCCCCcE-EEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEe
Confidence 32 478889888763 22222 122212 34578999985432 22 222 34444321 23333444
Q ss_pred ccCCCcEEEE-EEcCCCCcEEEEEcCCC--CCeEEEEECCCCcEEEEee----CCCCEEEEEECCCCCeEEEEEecC-CC
Q 014934 330 CEHTAAVKAI-AWSPHLHGLLASGGGTA--DRCIRFWNTTTNTHLSCMD----TGSQVCNLVWSKNVNELVSTHGYS-QN 401 (415)
Q Consensus 330 ~~h~~~V~~l-~~sp~~~~llasggg~~--d~~I~iwd~~t~~~~~~~~----~~~~V~~l~~s~~~~~l~s~~g~~-dg 401 (415)
....-.|..+ +|...++.++.++.+.. ...|.-.++..+....++. .......+.|||++++++.++.+. --
T Consensus 355 T~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P 434 (465)
T d1xfda1 355 TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVP 434 (465)
T ss_dssp CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSC
T ss_pred ccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCC
Confidence 4444456664 68998887877764211 2334444554443333222 234567899999999998754332 24
Q ss_pred cEEEEECCCCccc
Q 014934 402 QIIVWRYPTMSKV 414 (415)
Q Consensus 402 ~I~vw~~~s~~~l 414 (415)
.+.+++..+++++
T Consensus 435 ~~~~~~~~~~~~~ 447 (465)
T d1xfda1 435 MVTVHNTTDKKKM 447 (465)
T ss_dssp CEEEEETTTCCEE
T ss_pred eEEEEECCCCCEE
Confidence 6778887776654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.29 E-value=0.00025 Score=63.61 Aligned_cols=182 Identities=10% Similarity=0.093 Sum_probs=126.4
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCC---CCCeEEEEEcCCCCeEEEEEC----CCcEEEEECCCC
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGI---DDSVCSVGWANRNTHLAVGTS----HGKVQIWDASRC 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~---~~~V~~v~~sp~g~~la~g~~----dg~V~iwd~~~~ 240 (415)
.+.++.+.+ ++++++ ....|+++|..+++...+..... ...+..+.+.++|++.++... .+.-.+|.+..+
T Consensus 60 ~~~~i~~~~dg~l~va-~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g 138 (295)
T d2ghsa1 60 MGSALAKISDSKQLIA-SDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG 138 (295)
T ss_dssp CEEEEEEEETTEEEEE-ETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT
T ss_pred CcEEEEEecCCCEEEE-EeCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCC
Confidence 356777777 555554 46789999999999877765422 235788999999986665432 234566776666
Q ss_pred eeeEEecCCCccEEEEEeeC--C-EEEEEeCCCcEEEEECCCCC------c-cEEEeccccCCeEEEEEeCCCCEEEEEe
Q 014934 241 KRVRTMEGHRLRVGALAWSS--S-LLSSGSRDKSILQRDIRAQE------D-FVSKLSGHKSEVCGLKWSYDNRELASGG 310 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~~--~-~l~sgs~dg~I~iwd~~~~~------~-~~~~~~~h~~~V~~l~~spdg~~lasg~ 310 (415)
+....+.. -.....++|++ + ++++-+..+.|..+++.... . ......+......++++..+|++.++.-
T Consensus 139 ~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~ 217 (295)
T d2ghsa1 139 KVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW 217 (295)
T ss_dssp EEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred cEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeee
Confidence 65444432 33456788873 3 55666778889999875322 1 1122233445678999999999888877
Q ss_pred CCCcEEEEECCCCceeEEeccCCCcEEEEEEc-CCCCcEEEEEc
Q 014934 311 NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS-PHLHGLLASGG 353 (415)
Q Consensus 311 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s-p~~~~llasgg 353 (415)
..+.|..||. +++.+..+.-....+++++|- |+.+.|+++..
T Consensus 218 ~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 218 GEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp TTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence 8889999995 688888887666789999996 67777888764
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.17 E-value=0.0018 Score=56.77 Aligned_cols=227 Identities=6% Similarity=-0.045 Sum_probs=143.9
Q ss_pred cEEEEEcCCeEEEEECCCCCeE-----EeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCeeeEEecCCCcc
Q 014934 179 NVLAVGLGNCVYLWNACSSKVT-----KLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVRTMEGHRLR 252 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~~~-----~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~~~~l~~h~~~ 252 (415)
.+|..+..+.|+-.+++..... .... .+...+.+|+|.+..+.|.... .++.|+..++........+......
T Consensus 2 ~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~-~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~ 80 (263)
T d1npea_ 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (263)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred CEEEEeCCCeEEEEECCCccccccccccccc-cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccc
Confidence 4577777778877777554321 1111 2234578899998777666654 4577888888765554445444456
Q ss_pred EEEEEee--CCEEE-EEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC---CCcEEEEECCCCcee
Q 014934 253 VGALAWS--SSLLS-SGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN---DNRLFVWNQHSTQPV 326 (415)
Q Consensus 253 V~~l~~~--~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~---dg~I~iwd~~~~~~~ 326 (415)
+.+|+++ ++.|. +-...+.|.+.++..... ............+++++|...+|..... ...|.--++......
T Consensus 81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~ 159 (263)
T d1npea_ 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred ccEEEEeccCCeEEEeccCCCEEEEEecCCceE-EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence 7777775 55554 555677899999986652 2333333467899999997777664432 233555566544333
Q ss_pred EEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEE
Q 014934 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (415)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw 406 (415)
......-....+|++.+.+..|+.+-. ..+.|...|+........+.......++++. +..|..+ -...+.|...
T Consensus 160 ~i~~~~~~~P~glaiD~~~~~lYw~d~--~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwt-d~~~~~I~~~ 234 (263)
T d1npea_ 160 ILAQDNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-DWKTNSVIAM 234 (263)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-ETTTTEEEEE
T ss_pred eeeeecccccceEEEeecCcEEEEEeC--CCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEE-ECCCCEEEEE
Confidence 333334456789999988887878765 5789999999765544334433445677775 4555554 3456788887
Q ss_pred ECCCCc
Q 014934 407 RYPTMS 412 (415)
Q Consensus 407 ~~~s~~ 412 (415)
+..+++
T Consensus 235 ~~~~g~ 240 (263)
T d1npea_ 235 DLAISK 240 (263)
T ss_dssp ETTTTE
T ss_pred ECCCCc
Confidence 776654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=0.0042 Score=54.37 Aligned_cols=225 Identities=10% Similarity=-0.066 Sum_probs=141.5
Q ss_pred EEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCe----eeEEecCCCccEE
Q 014934 180 VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCK----RVRTMEGHRLRVG 254 (415)
Q Consensus 180 ~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~----~~~~l~~h~~~V~ 254 (415)
+|..+....|+..++.+.+...+. .....+.+++|.+..+.|.... ..+.|.-.++.... ....+......+.
T Consensus 3 fLl~s~~~~I~~~~l~~~~~~~~~--~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECCCeEEEEECCCCcceeee--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence 466776778999999887766665 3456788999998877776654 45566666654311 1122222233444
Q ss_pred EEEee--CC-EEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe--CCCcEEEEECCCCceeEEe
Q 014934 255 ALAWS--SS-LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG--NDNRLFVWNQHSTQPVLKY 329 (415)
Q Consensus 255 ~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~--~dg~I~iwd~~~~~~~~~~ 329 (415)
+|+++ ++ +.++-...+.|.+.++.... ....+........+|+++|...+|.... ..+.|.-.++.........
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~-~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~ 159 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCce-EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc
Confidence 55554 44 45555567789999998765 3334444556789999999666655433 3456777777554443333
Q ss_pred ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC---CCCEEEEEECCCCCeEEEEEecCCCcEEEE
Q 014934 330 CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (415)
Q Consensus 330 ~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~---~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw 406 (415)
...-....++++.+.+..|+.+-. ..+.|...++........+.. .....++++. +..|..+ -..++.|...
T Consensus 160 ~~~~~~p~gl~iD~~~~~lYw~d~--~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~t-d~~~~~I~~~ 234 (266)
T d1ijqa1 160 TENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT-DIINEAIFSA 234 (266)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE-ETTTTEEEEE
T ss_pred ccccceeeEEEeeccccEEEEecC--CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEE-ECCCCeEEEE
Confidence 344466789999998888888866 678999999876544333322 2345667776 3445553 3456777777
Q ss_pred ECCCCc
Q 014934 407 RYPTMS 412 (415)
Q Consensus 407 ~~~s~~ 412 (415)
+..+++
T Consensus 235 ~~~~g~ 240 (266)
T d1ijqa1 235 NRLTGS 240 (266)
T ss_dssp ETTTCC
T ss_pred ECCCCc
Confidence 665543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.98 E-value=0.0024 Score=59.22 Aligned_cols=185 Identities=12% Similarity=0.118 Sum_probs=120.3
Q ss_pred CCCeEEEEE-CCCcEEEEECCCCeeeEEecC-CCccEEEEEee----CCEEEEEeCCC------------------cEEE
Q 014934 219 RNTHLAVGT-SHGKVQIWDASRCKRVRTMEG-HRLRVGALAWS----SSLLSSGSRDK------------------SILQ 274 (415)
Q Consensus 219 ~g~~la~g~-~dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~~~----~~~l~sgs~dg------------------~I~i 274 (415)
||++|++.. .++.|.+.|+.+.++...+.- ....+..+... -.+++.++.+. .+..
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ 177 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 177 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence 788888876 578899999999987664432 33445555543 35777776633 2567
Q ss_pred EECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC---------------cEEEE---------------------
Q 014934 275 RDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN---------------RLFVW--------------------- 318 (415)
Q Consensus 275 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg---------------~I~iw--------------------- 318 (415)
+|..+.+...+.. -.+....+.++++|+++++.+.+. .+.++
T Consensus 178 ID~~tm~V~~QV~--V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~ 255 (459)
T d1fwxa2 178 VDADKWEVAWQVL--VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 255 (459)
T ss_dssp EETTTTEEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EecCCceEEEEee--eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence 8888776322222 234677899999999988876431 13333
Q ss_pred --ECCC--CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC------------cEEEEeeCCCCEEE
Q 014934 319 --NQHS--TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN------------THLSCMDTGSQVCN 382 (415)
Q Consensus 319 --d~~~--~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~------------~~~~~~~~~~~V~~ 382 (415)
|.+. +..+..+-.-......+..+|||+++++++. .+.++.++|++.- ........+-.-..
T Consensus 256 VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGK--Ls~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLh 333 (459)
T d1fwxa2 256 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK--LSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 333 (459)
T ss_dssp EEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECT--TSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEE
T ss_pred eecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCC--cCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccc
Confidence 3322 1111111111223456899999999988886 8999999999631 12233345666788
Q ss_pred EEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 383 LVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 383 l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.+|+..|+...+ -+-|.+|.-|++.
T Consensus 334 t~fd~~g~ayts--lfids~v~kw~~~ 358 (459)
T d1fwxa2 334 TAFDGRGNAYTS--LFLDSQVVKWNIE 358 (459)
T ss_dssp EEECTTSEEEEE--ETTTTEEEEEEHH
T ss_pred cccCCCceEEEE--eeccceEEEEecc
Confidence 999998853333 6889999999984
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.77 E-value=0.01 Score=52.07 Aligned_cols=228 Identities=10% Similarity=0.075 Sum_probs=149.0
Q ss_pred CCcEEEEEc----CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCcc
Q 014934 177 SHNVLAVGL----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLR 252 (415)
Q Consensus 177 ~~~~la~~~----d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~ 252 (415)
+++++++-. ...|.|.|+............. -+.-.+|..+.||.-+ ..+++|+|+++.+.+..+.- ...
T Consensus 31 SDkyicVRe~~~~~~~VvIidl~n~~~~~Rrpi~A----dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~ 104 (327)
T d1utca2 31 SDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDD 104 (327)
T ss_dssp SSSEEEEEEEETTEEEEEEEETTSTTSCEEEECCC----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSC
T ss_pred cCCEEEEEeccCCCceEEEEECCCCCcceecccch----hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCC
Confidence 355666542 2478999987765333332222 2344578888888766 55899999999988888773 456
Q ss_pred EEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEecccc----CCeEEEEEeCCCCEEEEEe---C----CCcEEEEEC
Q 014934 253 VGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK----SEVCGLKWSYDNRELASGG---N----DNRLFVWNQ 320 (415)
Q Consensus 253 V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~----~~V~~l~~spdg~~lasg~---~----dg~I~iwd~ 320 (415)
|.--.|- ++.|+-.+ +..|+.|+++....+.+.+..|. ..|-.-..++++++++..| . .|.+.+|..
T Consensus 105 VvfWkWis~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~ 183 (327)
T d1utca2 105 VTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 183 (327)
T ss_dssp CCEEEESSSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEET
T ss_pred cEEEEecCCCEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEe
Confidence 7666775 66666664 55699999977666777777664 3577778889999987643 2 356888887
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCC--CcEEEEEc-CCCCCeEEEEECCCCc----E--EEEee-------CCCCEEEEE
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHL--HGLLASGG-GTADRCIRFWNTTTNT----H--LSCMD-------TGSQVCNLV 384 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~--~~llasgg-g~~d~~I~iwd~~t~~----~--~~~~~-------~~~~V~~l~ 384 (415)
+.+ .-+.+++|.+....+...-.. ..+++-+. +...+.+++.++.... . .+..+ .+..-.++.
T Consensus 184 er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamq 262 (327)
T d1utca2 184 DRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ 262 (327)
T ss_dssp TTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEE
T ss_pred ccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEE
Confidence 654 456778887666555443221 12443332 1234788898886521 1 11221 234566788
Q ss_pred ECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 385 WSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 385 ~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
.++....+.. -..-|-|++||+.++..+
T Consensus 263 vs~kygiiyv--iTK~G~i~lyDleTgt~i 290 (327)
T d1utca2 263 ISEKHDVVFL--ITKYGYIHLYDLETGTCI 290 (327)
T ss_dssp EETTTTEEEE--EETTSEEEEEETTTCCEE
T ss_pred eeccCCEEEE--EecCcEEEEEEcccccEE
Confidence 8887777666 357899999999998765
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.43 E-value=0.014 Score=56.81 Aligned_cols=237 Identities=10% Similarity=0.030 Sum_probs=134.3
Q ss_pred ecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCC---CCCeEEEEEcCCCCeEEEEEC------CCcEEEEECCCCeeeE
Q 014934 174 DWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGI---DDSVCSVGWANRNTHLAVGTS------HGKVQIWDASRCKRVR 244 (415)
Q Consensus 174 ~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~---~~~V~~v~~sp~g~~la~g~~------dg~V~iwd~~~~~~~~ 244 (415)
++..+.+++...++.|+-.|.++|+......+.. ...+++--...+ ..++++.. .|.|.-+|+.+++.+-
T Consensus 112 a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W 190 (571)
T d2ad6a1 112 AYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred eeeCCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEE
Confidence 3444667777788999999999999876654321 111221111113 34555553 6789999999998876
Q ss_pred EecCCC-------------------------------------ccEE-EEEee--CCEEEEEeC----------------
Q 014934 245 TMEGHR-------------------------------------LRVG-ALAWS--SSLLSSGSR---------------- 268 (415)
Q Consensus 245 ~l~~h~-------------------------------------~~V~-~l~~~--~~~l~sgs~---------------- 268 (415)
.+.... +.+. ..+.+ ..+++.+..
T Consensus 191 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~ 270 (571)
T d2ad6a1 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccc
Confidence 543210 0110 11112 244444433
Q ss_pred CCcEEEEECCCCCccEEEeccccC---------CeEEEEEeCCCC---EEEEEeCCCcEEEEECCCCceeEEeccCC---
Q 014934 269 DKSILQRDIRAQEDFVSKLSGHKS---------EVCGLKWSYDNR---ELASGGNDNRLFVWNQHSTQPVLKYCEHT--- 333 (415)
Q Consensus 269 dg~I~iwd~~~~~~~~~~~~~h~~---------~V~~l~~spdg~---~lasg~~dg~I~iwd~~~~~~~~~~~~h~--- 333 (415)
...+.-.|+++++. +-.++.+.. ......+..+++ .++.++.+|.++++|..+++++.......
T Consensus 271 s~svvAld~~TG~~-~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~ 349 (571)
T d2ad6a1 271 TMTIWGRDLDTGMA-KWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN 349 (571)
T ss_dssp TTEEEEEETTTCCE-EEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred ccceeeeeccchhh-eecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccc
Confidence 24577788888873 333332111 111122233444 46778899999999999998875421100
Q ss_pred ----------------------------------CcE--EEEEEcCCCCcEEEEEc------------------------
Q 014934 334 ----------------------------------AAV--KAIAWSPHLHGLLASGG------------------------ 353 (415)
Q Consensus 334 ----------------------------------~~V--~~l~~sp~~~~llasgg------------------------ 353 (415)
+.. ...+++|....+++-..
T Consensus 350 ~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (571)
T d2ad6a1 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccce
Confidence 000 11456666543332111
Q ss_pred ----------CCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 354 ----------GTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 354 ----------g~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
....|.|.-+|+.+|+.+..........+-..+..+..+++ |..||.++.+|..++++|
T Consensus 430 ~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~--G~~dg~l~A~Da~tGe~l 498 (571)
T d2ad6a1 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY--ATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEE
T ss_pred eeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEE--ECCCCeEEEEECCCCcEE
Confidence 00125688899999998887765443322122224556666 789999999999999875
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.40 E-value=0.033 Score=51.38 Aligned_cols=213 Identities=13% Similarity=0.020 Sum_probs=134.3
Q ss_pred CcEEEEE--cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCC--CCeEEEEECC------------------CcEEEE
Q 014934 178 HNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR--NTHLAVGTSH------------------GKVQIW 235 (415)
Q Consensus 178 ~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~--g~~la~g~~d------------------g~V~iw 235 (415)
+++|.+. .++.|.+.|+.+.++.++.++.....+..+...++ -.+++.++.. +.+.++
T Consensus 99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I 178 (459)
T d1fwxa2 99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 178 (459)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence 4666666 35789999999999988888777778888887654 4577766653 236678
Q ss_pred ECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCC--------------------------------------CcEEEE
Q 014934 236 DASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRD--------------------------------------KSILQR 275 (415)
Q Consensus 236 d~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~d--------------------------------------g~I~iw 275 (415)
|..+.+....+.- .+....++++ ++++++.+.+ +.+.+.
T Consensus 179 D~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VV 257 (459)
T d1fwxa2 179 DADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 257 (459)
T ss_dssp ETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred ecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceee
Confidence 8888776555431 1122333443 5666665533 123444
Q ss_pred ECCCC--CccEEEeccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCCCc-----------eeEEeccCCCcEEEEEE
Q 014934 276 DIRAQ--EDFVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHSTQ-----------PVLKYCEHTAAVKAIAW 341 (415)
Q Consensus 276 d~~~~--~~~~~~~~~h~~~V~~l~~spdg~~lasg~-~dg~I~iwd~~~~~-----------~~~~~~~h~~~V~~l~~ 341 (415)
|.+.. ......+.. .....++..+|||+++++++ .+..+.|+|++.-. .+..-....-.-..-+|
T Consensus 258 D~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~f 336 (459)
T d1fwxa2 258 DGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF 336 (459)
T ss_dssp ECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEE
T ss_pred cccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccccc
Confidence 44431 112222221 23356789999999987755 68899999986321 11111122233455688
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECCC----------CcEEEEeeCCCCEEEEEE------CCCCCeEEEE
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTTT----------NTHLSCMDTGSQVCNLVW------SKNVNELVST 395 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~t----------~~~~~~~~~~~~V~~l~~------s~~~~~l~s~ 395 (415)
...|. .+.|-- .|..|.-||+.. ...+..++...++-.+.- .|+|++|++.
T Consensus 337 d~~g~-aytslf--ids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~ 403 (459)
T d1fwxa2 337 DGRGN-AYTSLF--LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL 403 (459)
T ss_dssp CTTSE-EEEEET--TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred CCCce-EEEEee--ccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEe
Confidence 88763 666665 799999999853 256677777777766643 5789999884
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.29 E-value=0.049 Score=47.70 Aligned_cols=187 Identities=12% Similarity=0.141 Sum_probs=125.1
Q ss_pred eeEeecCCCcEEEEEcCCeEEEEECCCC-CeEEeEecCC---CCCeEEEEEcCCCCeEEEEEC-------CCcEEEEECC
Q 014934 170 LNLVDWSSHNVLAVGLGNCVYLWNACSS-KVTKLCDLGI---DDSVCSVGWANRNTHLAVGTS-------HGKVQIWDAS 238 (415)
Q Consensus 170 i~~l~ws~~~~la~~~d~~V~iwd~~~~-~~~~~~~~~~---~~~V~~v~~sp~g~~la~g~~-------dg~V~iwd~~ 238 (415)
|.--.|-..+.|+.-.+..||-|+++.. ...+.++... ...|..-..++++++++..+- .|.+++|..+
T Consensus 105 VvfWkWis~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e 184 (327)
T d1utca2 105 VTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 184 (327)
T ss_dssp CCEEEESSSSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred cEEEEecCCCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec
Confidence 4455788889999999999999999543 4566665311 356777788889997766432 4778999987
Q ss_pred CCeeeEEecCCCccEEEEEeeC-----CEEEEEe---CCCcEEEEECCCCCc---c-----EEEec---cccCCeEEEEE
Q 014934 239 RCKRVRTMEGHRLRVGALAWSS-----SLLSSGS---RDKSILQRDIRAQED---F-----VSKLS---GHKSEVCGLKW 299 (415)
Q Consensus 239 ~~~~~~~l~~h~~~V~~l~~~~-----~~l~sgs---~dg~I~iwd~~~~~~---~-----~~~~~---~h~~~V~~l~~ 299 (415)
.. .-+.+++|.+....+...+ .+++-+. ..+.+.+.++..... . +..+. .-..---++..
T Consensus 185 r~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqv 263 (327)
T d1utca2 185 RK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 263 (327)
T ss_dssp TT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEE
T ss_pred cC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEe
Confidence 64 4567888887777776653 2333332 235788888876321 0 11111 11233456888
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeE
Q 014934 300 SYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (415)
Q Consensus 300 spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I 360 (415)
++.-..+..-+.-|.|++||+.++.++..-+-....|...+-......+++.. .+|.|
T Consensus 264 s~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VN---r~GqV 321 (327)
T d1utca2 264 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN---RKGQV 321 (327)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEE---TTSEE
T ss_pred eccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEEC---CCCeE
Confidence 88888899999999999999999999887655556666555555544555554 35544
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.24 E-value=0.041 Score=53.37 Aligned_cols=208 Identities=11% Similarity=0.007 Sum_probs=122.5
Q ss_pred CCeEEEEECCCCCeEEeEecCC------------------------------------CCCe-EEEEEcCCCCeEEEEEC
Q 014934 186 GNCVYLWNACSSKVTKLCDLGI------------------------------------DDSV-CSVGWANRNTHLAVGTS 228 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~------------------------------------~~~V-~~v~~sp~g~~la~g~~ 228 (415)
.+.|+-+|+.+|+..-.+.... ...+ ...++.++...+..+..
T Consensus 175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg 254 (571)
T d2ad6a1 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG 254 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecc
Confidence 4679999999999876553211 0111 22345566666665544
Q ss_pred ----------------CCcEEEEECCCCeeeEEecCCC-----------ccEEEEEeeC---CEEEEEeCCCcEEEEECC
Q 014934 229 ----------------HGKVQIWDASRCKRVRTMEGHR-----------LRVGALAWSS---SLLSSGSRDKSILQRDIR 278 (415)
Q Consensus 229 ----------------dg~V~iwd~~~~~~~~~l~~h~-----------~~V~~l~~~~---~~l~sgs~dg~I~iwd~~ 278 (415)
...+.-.|+++++.+-.++.+. .....+..++ ..++.++.+|.+++.|..
T Consensus 255 ~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~ 334 (571)
T d2ad6a1 255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE 334 (571)
T ss_dssp CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred cccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecC
Confidence 2457778999998876665321 1222333333 356788899999999988
Q ss_pred CCCccEEEecc------------------------------------ccCC--eEEEEEeCCCCEEEEEeCC--------
Q 014934 279 AQEDFVSKLSG------------------------------------HKSE--VCGLKWSYDNRELASGGND-------- 312 (415)
Q Consensus 279 ~~~~~~~~~~~------------------------------------h~~~--V~~l~~spdg~~lasg~~d-------- 312 (415)
+++.....-.. ..+. -...+++|+..++.....+
T Consensus 335 tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~ 414 (571)
T d2ad6a1 335 NGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPF 414 (571)
T ss_dssp TCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred CCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccc
Confidence 87632110000 0000 0125677777776654433
Q ss_pred -----------------------------CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 313 -----------------------------NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 313 -----------------------------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
|.|.-+|+.+++.+.+...-....... ..-.+. |+..+. .|+.++-+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~-l~Tagg-lVf~G~--~dg~l~A~ 490 (571)
T d2ad6a1 415 MLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGT-LYTKGG-LVWYAT--LDGYLKAL 490 (571)
T ss_dssp CCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBC-EEETTT-EEEEEC--TTSEEEEE
T ss_pred cccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcce-eEecCC-EEEEEC--CCCeEEEE
Confidence 357777888888776654211111111 111233 566565 89999999
Q ss_pred ECCCCcEEEEeeCCCCEEE--EEECCCCCe-EEEEEe
Q 014934 364 NTTTNTHLSCMDTGSQVCN--LVWSKNVNE-LVSTHG 397 (415)
Q Consensus 364 d~~t~~~~~~~~~~~~V~~--l~~s~~~~~-l~s~~g 397 (415)
|.++|+.+.+++.+..+.. +.|..+|+. +++..|
T Consensus 491 Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~g 527 (571)
T d2ad6a1 491 DNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYG 527 (571)
T ss_dssp ETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ECCCCcEEEEEECCCCceecceEEEECCEEEEEEEec
Confidence 9999999999986655443 666668864 444433
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.21 E-value=0.0013 Score=57.15 Aligned_cols=96 Identities=11% Similarity=0.034 Sum_probs=69.8
Q ss_pred EEeCC--CCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEc-CCCC--CeEEEEECCCCcEEE
Q 014934 298 KWSYD--NRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGG-GTAD--RCIRFWNTTTNTHLS 372 (415)
Q Consensus 298 ~~spd--g~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg-g~~d--~~I~iwd~~t~~~~~ 372 (415)
.++|| |+.+|..+. +.|++.|+.+++.. .+..+.+.+...+|||||+.|+.+.. +..+ ..|.+++..+++..+
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 46788 999887654 56999999988754 56677788899999999998776542 1122 348888888887655
Q ss_pred EeeCC-------CCEEEEEECCCCCeEEEE
Q 014934 373 CMDTG-------SQVCNLVWSKNVNELVST 395 (415)
Q Consensus 373 ~~~~~-------~~V~~l~~s~~~~~l~s~ 395 (415)
..... .......|+|+|+.|+.+
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred eeecCCCccCccccccccccCCCCCEEEEE
Confidence 43221 235678999999998874
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.07 E-value=0.11 Score=50.06 Aligned_cols=223 Identities=11% Similarity=0.092 Sum_probs=131.9
Q ss_pred CeEEEEECCCCCeEEeEecCCC-----------------------------CCe-EEEEEcCCCCeEEEEEC--------
Q 014934 187 NCVYLWNACSSKVTKLCDLGID-----------------------------DSV-CSVGWANRNTHLAVGTS-------- 228 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~-----------------------------~~V-~~v~~sp~g~~la~g~~-------- 228 (415)
+.|+-+|..+|+..-.+..... ..+ ..+.+.+...++..+..
T Consensus 178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~ 257 (560)
T d1kv9a2 178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNRE 257 (560)
T ss_dssp CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH
T ss_pred ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccc
Confidence 5699999999998776653211 011 12345566665555432
Q ss_pred -----------CCcEEEEECCCCeeeEEecCCCc-----------cEEEEEeeC---CEEEEEeCCCcEEEEECCCCCcc
Q 014934 229 -----------HGKVQIWDASRCKRVRTMEGHRL-----------RVGALAWSS---SLLSSGSRDKSILQRDIRAQEDF 283 (415)
Q Consensus 229 -----------dg~V~iwd~~~~~~~~~l~~h~~-----------~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~ 283 (415)
...|.-.|+++++.+-.++.... .+..+...+ ..++.++.+|.++++|-.+++..
T Consensus 258 ~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i 337 (560)
T d1kv9a2 258 VRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (560)
T ss_dssp HHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred cccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence 23467778888887655542211 122333333 46778899999999998887632
Q ss_pred EEEecccc-----------------------------------CCeEEEEEeCCCCEEEEEeCC----------------
Q 014934 284 VSKLSGHK-----------------------------------SEVCGLKWSYDNRELASGGND---------------- 312 (415)
Q Consensus 284 ~~~~~~h~-----------------------------------~~V~~l~~spdg~~lasg~~d---------------- 312 (415)
........ ..-...+++|+..++.....+
T Consensus 338 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~ 417 (560)
T d1kv9a2 338 SAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRK 417 (560)
T ss_dssp EEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCS
T ss_pred ccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeecccccccccc
Confidence 21111100 001245677777776654322
Q ss_pred --------------------CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE
Q 014934 313 --------------------NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS 372 (415)
Q Consensus 313 --------------------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~ 372 (415)
|.|.-||+.+++.+.++... ....+-.+.-.+. |+..|. .|+.++-+|..+|+.+.
T Consensus 418 ~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~Tagg-lVF~G~--~dg~l~A~Da~tGe~LW 493 (560)
T d1kv9a2 418 AFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGN-LVFQGT--AAGQMHAYSADKGEALW 493 (560)
T ss_dssp SCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTT-EEEEEC--TTSEEEEEETTTCCEEE
T ss_pred ccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC-CCCCCceeEECCC-EEEEEC--CCCcEEEEECCCCcEeE
Confidence 46778899999888776422 1111111222233 666665 89999999999999999
Q ss_pred EeeCCCCEEE--EEECCCCC-eEEEEEec------------------CCCcEEEEECCCCcc
Q 014934 373 CMDTGSQVCN--LVWSKNVN-ELVSTHGY------------------SQNQIIVWRYPTMSK 413 (415)
Q Consensus 373 ~~~~~~~V~~--l~~s~~~~-~l~s~~g~------------------~dg~I~vw~~~s~~~ 413 (415)
+++....+.. +.|..+|+ +|++..|+ ..+.|.+|.++...+
T Consensus 494 ~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~~~ 555 (560)
T d1kv9a2 494 QFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKAQ 555 (560)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCCC
T ss_pred EEECCCCccccCEEEEECCEEEEEEEeCCCcccccccccccccccCCCCCEEEEEEeCCCCC
Confidence 9986544332 56666786 44544442 124688888876544
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.06 E-value=0.035 Score=54.14 Aligned_cols=81 Identities=14% Similarity=0.091 Sum_probs=50.0
Q ss_pred CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEE--EEECCCCC
Q 014934 313 NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCN--LVWSKNVN 390 (415)
Q Consensus 313 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~--l~~s~~~~ 390 (415)
|.|.-||+.+++.+.+... ...+.+-.++-.+. |+..|. .|+.++-+|..+|+.+.+++....+.. +.|..+|+
T Consensus 453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagg-lVF~G~--~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGk 528 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGD-LVFYGT--LDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT 528 (596)
T ss_dssp EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTT-EEEEEC--TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred ceEEEEeCCCCceecccCC-CCCCccceeEecCC-EEEEEC--CCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCE
Confidence 4577788888877766532 22221111222333 655565 899999999999999999986543322 55556776
Q ss_pred e-EEEEEe
Q 014934 391 E-LVSTHG 397 (415)
Q Consensus 391 ~-l~s~~g 397 (415)
. ++...|
T Consensus 529 QYvav~~G 536 (596)
T d1w6sa_ 529 QYVAIYYG 536 (596)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 4 444434
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.99 E-value=0.089 Score=45.35 Aligned_cols=199 Identities=7% Similarity=-0.048 Sum_probs=127.3
Q ss_pred eeEeecCC-CcEEEEE--cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCCcEEEEECCCCeeeEE
Q 014934 170 LNLVDWSS-HNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 170 i~~l~ws~-~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg~V~iwd~~~~~~~~~ 245 (415)
+..|++.. ++.|..+ .++.|+..++..+....+.. ..-..+.++++..-+..|..+ ...+.|.+.++........
T Consensus 38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~-~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l 116 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC-TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE-eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEE
Confidence 45567765 4545444 35789988887776655554 233578999998766655544 4567899999875543333
Q ss_pred ecCCCccEEEEEeeC--CEEEEEe-C--CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEE-eCCCcEEEEE
Q 014934 246 MEGHRLRVGALAWSS--SLLSSGS-R--DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASG-GNDNRLFVWN 319 (415)
Q Consensus 246 l~~h~~~V~~l~~~~--~~l~sgs-~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg-~~dg~I~iwd 319 (415)
+.........++.++ .+++-.. . ...|..-++..... .......-....+|++.+.++.|..+ ...+.|...|
T Consensus 117 ~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~ 195 (263)
T d1npea_ 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (263)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEE
Confidence 343446688888873 4444332 2 22355556655442 23333334567899999887777555 4678899999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 320 QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 320 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
+........+.+.. ...+|++. +.+++.+-. ..+.|...|..+++.+..+.
T Consensus 196 ~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~--~~~~I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 196 PAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDW--KTNSVIAMDLAISKEMDTFH 246 (263)
T ss_dssp TTEEEEEEEEECCC-SEEEEEEE--TTEEEEEET--TTTEEEEEETTTTEEEEEEC
T ss_pred CCCCCeEEEECCCC-CcEEEEEE--CCEEEEEEC--CCCEEEEEECCCCccceEEC
Confidence 87654433343333 34677776 446888765 57889999999998877664
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.91 E-value=0.11 Score=50.13 Aligned_cols=96 Identities=13% Similarity=0.180 Sum_probs=58.7
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEE--EEECCCCC-
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCN--LVWSKNVN- 390 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~--l~~s~~~~- 390 (415)
.|.-||+.+++.+.++.... +...=..+-.+. |+..|. .|+.++.+|..+|+.+.+++....+.. +.|..+|+
T Consensus 458 ~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagg-lVF~G~--~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ 533 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGN-VVFQGT--ADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ 533 (573)
T ss_dssp EEEEEETTTTEEEEEEEESS-SCCCCEEEETTT-EEEEEC--TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cEEEeCCCCCceEeeecCCC-CCCCceEEEcCC-EEEEEC--CCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 46667777777776664322 111111122333 555555 899999999999999999986544333 55666776
Q ss_pred eEEEEEec--------------CCCcEEEEECCCCcc
Q 014934 391 ELVSTHGY--------------SQNQIIVWRYPTMSK 413 (415)
Q Consensus 391 ~l~s~~g~--------------~dg~I~vw~~~s~~~ 413 (415)
+++..+|. ..+.|.+|.+....+
T Consensus 534 Yv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~~ 570 (573)
T d1kb0a2 534 YVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKAR 570 (573)
T ss_dssp EEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBCC
T ss_pred EEEEEeCCCcccccccccccCCCCCEEEEEEeCCcCC
Confidence 44554442 124688888765443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.88 E-value=0.049 Score=52.68 Aligned_cols=234 Identities=12% Similarity=0.082 Sum_probs=133.5
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC--CCCeEEEEEC------CCcEEEEECCCCeeeEEecCC
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTS------HGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp--~g~~la~g~~------dg~V~iwd~~~~~~~~~l~~h 249 (415)
+.+++...++.|+-.|..+|+...............+.-.| .+..++++.. .|.|.-+|.++++.+-.+..-
T Consensus 118 ~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~ 197 (560)
T d1kv9a2 118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV 197 (560)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred CeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeec
Confidence 45666667899999999999987766532211111111111 1234444432 367999999999887665310
Q ss_pred ---Cc-----------------------cEEEEEee-------CCEEEEEeC-------------------CCcEEEEEC
Q 014934 250 ---RL-----------------------RVGALAWS-------SSLLSSGSR-------------------DKSILQRDI 277 (415)
Q Consensus 250 ---~~-----------------------~V~~l~~~-------~~~l~sgs~-------------------dg~I~iwd~ 277 (415)
.. ....-.|. .++++.+.. ...|.-.|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~ 277 (560)
T d1kv9a2 198 PGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP 277 (560)
T ss_dssp CCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred cccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecC
Confidence 00 01222232 234433321 234667788
Q ss_pred CCCCccEEEeccccCCe---------EEEEEeCCCC---EEEEEeCCCcEEEEECCCCceeEEeccCC-C----------
Q 014934 278 RAQEDFVSKLSGHKSEV---------CGLKWSYDNR---ELASGGNDNRLFVWNQHSTQPVLKYCEHT-A---------- 334 (415)
Q Consensus 278 ~~~~~~~~~~~~h~~~V---------~~l~~spdg~---~lasg~~dg~I~iwd~~~~~~~~~~~~h~-~---------- 334 (415)
++++. .-.++.....+ .-+....+++ .++.++.+|.++++|..+++++.....-. .
T Consensus 278 ~tG~~-~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~ 356 (560)
T d1kv9a2 278 DTGKL-AWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG 356 (560)
T ss_dssp TTCCE-EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred Cccce-eEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence 87763 22222211111 1122223443 56778899999999999998875542100 0
Q ss_pred -------------cE------------EEEEEcCCCCcEEEEEc---------------------------------CCC
Q 014934 335 -------------AV------------KAIAWSPHLHGLLASGG---------------------------------GTA 356 (415)
Q Consensus 335 -------------~V------------~~l~~sp~~~~llasgg---------------------------------g~~ 356 (415)
.+ ...+++|+...+++... +..
T Consensus 357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (560)
T d1kv9a2 357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV 436 (560)
T ss_dssp CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred cccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccc
Confidence 00 13456666554443321 001
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 357 DRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 357 d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
.+.|.-||+.+|+.+..+..+....+-..+-.+..+++ |..||.|+.+|..+++.|
T Consensus 437 ~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~--G~~dg~l~A~Da~tGe~L 492 (560)
T d1kv9a2 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ--GTAAGQMHAYSADKGEAL 492 (560)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEE
T ss_pred ccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEE--ECCCCcEEEEECCCCcEe
Confidence 35788999999999988875554443333445666666 788999999999999875
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.87 E-value=0.018 Score=56.12 Aligned_cols=95 Identities=21% Similarity=0.296 Sum_probs=64.0
Q ss_pred CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEE--EEEECCCC
Q 014934 312 DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVC--NLVWSKNV 389 (415)
Q Consensus 312 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~--~l~~s~~~ 389 (415)
.|.|.-+|+.+++.+.++..+. ++..-..+..+. ++..|. .|+.++-+|..||+.+.+++....+. -+.|..+|
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagg-lVF~Gt--~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G 540 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGN-LVFTGT--GDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDG 540 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTT-EEEEEC--TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCC-eEEEeC--CCCeEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence 3678889999999888775433 222111223343 555555 89999999999999999998654432 26777788
Q ss_pred C-eEEEEEec-------------------CCCcEEEEECCC
Q 014934 390 N-ELVSTHGY-------------------SQNQIIVWRYPT 410 (415)
Q Consensus 390 ~-~l~s~~g~-------------------~dg~I~vw~~~s 410 (415)
+ +++...|+ ..+.|.+|.+|+
T Consensus 541 ~qYv~i~ag~g~~~~~~~g~~~~~~~~~~~g~~l~vF~Lp~ 581 (582)
T d1flga_ 541 EQYLGVTVGYGGAVPLWGGDMADLTRPVAQGGSFWVFKLPS 581 (582)
T ss_dssp EEEEEEEECCCSHHHHHCTHHHHHHTTCCCCCEEEEEECCC
T ss_pred EEEEEEEeCCCCccccccccccccccccCCCCEEEEEeCCC
Confidence 5 45554442 235788998886
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.79 E-value=0.18 Score=48.92 Aligned_cols=233 Identities=14% Similarity=0.074 Sum_probs=132.0
Q ss_pred EEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC--CCCeEEEEEC------CCcEEEEECCCCeeeEEecCCC-
Q 014934 180 VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTS------HGKVQIWDASRCKRVRTMEGHR- 250 (415)
Q Consensus 180 ~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp--~g~~la~g~~------dg~V~iwd~~~~~~~~~l~~h~- 250 (415)
++....|+.|+-.|..+|+....+.......-..+.-.| -+..+++|.. .|.|+-+|+.+++.+=.+....
T Consensus 124 v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~ 203 (596)
T d1w6sa_ 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP 203 (596)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred EEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCC
Confidence 555557899999999999987776532111101111112 2445666653 4889999999999876543110
Q ss_pred ------------------------------------ccE-EEEEee--CCEEEEEeCC----------------CcEEEE
Q 014934 251 ------------------------------------LRV-GALAWS--SSLLSSGSRD----------------KSILQR 275 (415)
Q Consensus 251 ------------------------------------~~V-~~l~~~--~~~l~sgs~d----------------g~I~iw 275 (415)
..+ ..++.+ .+++..+..+ ..|.-.
T Consensus 204 ~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAl 283 (596)
T d1w6sa_ 204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR 283 (596)
T ss_dssp HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccc
Confidence 000 111222 2444444322 347778
Q ss_pred ECCCCCccEEEecc-cc-------CCeEEEEE-eCCCC---EEEEEeCCCcEEEEECCCCceeEEeccC--CCc------
Q 014934 276 DIRAQEDFVSKLSG-HK-------SEVCGLKW-SYDNR---ELASGGNDNRLFVWNQHSTQPVLKYCEH--TAA------ 335 (415)
Q Consensus 276 d~~~~~~~~~~~~~-h~-------~~V~~l~~-spdg~---~lasg~~dg~I~iwd~~~~~~~~~~~~h--~~~------ 335 (415)
|+++++..-+.-.. |. ....-+.. ..+|+ .++.+..+|.++++|..+++++...+.. ...
T Consensus 284 D~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~ 363 (596)
T d1w6sa_ 284 DADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL 363 (596)
T ss_dssp ETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred ccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccccccccc
Confidence 88888743222222 21 11111221 23443 5778899999999999999877543210 000
Q ss_pred -----E--------------------------EEEEEcCCCCcEEEEEc-------------------------------
Q 014934 336 -----V--------------------------KAIAWSPHLHGLLASGG------------------------------- 353 (415)
Q Consensus 336 -----V--------------------------~~l~~sp~~~~llasgg------------------------------- 353 (415)
+ ...+++|....+++-..
T Consensus 364 ~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 443 (596)
T d1w6sa_ 364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK 443 (596)
T ss_dssp TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred cccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCcc
Confidence 0 11245555442322210
Q ss_pred C-----CCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 354 G-----TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 354 g-----~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
| ..-|.|.-||+.+|+.+........+.+-..+..+..++. |..||.++.+|..+++.|
T Consensus 444 g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~--G~~Dg~l~A~Da~TGe~L 507 (596)
T d1w6sa_ 444 GDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFY--GTLDGYLKARDSDTGDLL 507 (596)
T ss_dssp SBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEE
T ss_pred cCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEecCCEEEE--ECCCCeEEEEECCCCcEe
Confidence 0 0125788999999998877765544333333345666666 889999999999999875
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.73 E-value=0.07 Score=48.67 Aligned_cols=169 Identities=9% Similarity=0.001 Sum_probs=103.4
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECC-----------CCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNAC-----------SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA 237 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~-----------~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~ 237 (415)
+++++.++ ..++++|....+.|-... .........+ ..|..++|+.+ .|++. .++.+..++.
T Consensus 39 ~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~i---p~v~~vafs~d--~l~v~-~~~~l~~~~~ 112 (381)
T d1xipa_ 39 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEI---PDVIFVCFHGD--QVLVS-TRNALYSLDL 112 (381)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEEC---TTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred cceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCC---CCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence 66889998 677877777788887632 1122222221 36889999744 56664 4556888887
Q ss_pred CCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEe-----ccccCCeEEEEEeCCCCEEEEEeCC
Q 014934 238 SRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKL-----SGHKSEVCGLKWSYDNRELASGGND 312 (415)
Q Consensus 238 ~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-----~~h~~~V~~l~~spdg~~lasg~~d 312 (415)
..-........-..++..+.+++..++....+|.+.++++..... .... ..-.+.+.+++|++.|.+++++..+
T Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~-~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~ 191 (381)
T d1xipa_ 113 EELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST-KQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNG 191 (381)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-EEEEESEEEEEECSSEEEEEETTSCEEEEEEETT
T ss_pred eccccccccccccccccceecCCceeEEEecCCCEEEEEeccCcc-ccccCCcceEEecCCceEEEEeCCcEEEEEeCCC
Confidence 664444444444567899999999999999999999999987752 1111 1123557778888777777776433
Q ss_pred CcEEE-EECCCCceeEEeccCCCcEEEEEEcCCCC
Q 014934 313 NRLFV-WNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346 (415)
Q Consensus 313 g~I~i-wd~~~~~~~~~~~~h~~~V~~l~~sp~~~ 346 (415)
+ ..+ -++.....+.........|.+|.|-....
T Consensus 192 ~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~ 225 (381)
T d1xipa_ 192 E-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 225 (381)
T ss_dssp E-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred c-eeeccCCCCccccCCCcCCCcceeEEEEecCce
Confidence 2 111 11111111100012345688999986644
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.62 E-value=0.24 Score=47.72 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=41.0
Q ss_pred CeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 358 RCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 358 ~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
|.|.-||+.+|+.+..+....+...-..+-.+..+++ |..||.++.+|..++++|
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~--G~~dg~l~A~Da~TGe~L 511 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ--GTADGRLVAYHAATGEKL 511 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEE
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEE--ECCCCeEEEEECCCCcEe
Confidence 4688899999999888875544333223345667776 788999999999999875
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.54 E-value=0.14 Score=45.95 Aligned_cols=136 Identities=11% Similarity=0.066 Sum_probs=83.3
Q ss_pred eEEEEECCCCCeEEeE--ecCCCCCeEEEEEcCCCCeEEEEECC-CcEEEEECCCCeeeEE--ecCCCccEEEEEe-eCC
Q 014934 188 CVYLWNACSSKVTKLC--DLGIDDSVCSVGWANRNTHLAVGTSH-GKVQIWDASRCKRVRT--MEGHRLRVGALAW-SSS 261 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~--~~~~~~~V~~v~~sp~g~~la~g~~d-g~V~iwd~~~~~~~~~--l~~h~~~V~~l~~-~~~ 261 (415)
.+.+||..++...... ...+.....+.++.++|++++.|+.+ ..+.+||..+..-... +........++.. ++.
T Consensus 53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~ 132 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 132 (387)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCc
Confidence 3789999998765432 22344445567889999999988655 5799999987654322 2222222233333 467
Q ss_pred EEEEEeCC------CcEEEEECCCCCccEEEecc----------cc-----CCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 262 LLSSGSRD------KSILQRDIRAQEDFVSKLSG----------HK-----SEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 262 ~l~sgs~d------g~I~iwd~~~~~~~~~~~~~----------h~-----~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
+++.|+.+ ..+.+||..+.. ...+.. +. ..-..+..-++|+.++.++.++.+.++|.
T Consensus 133 v~v~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~ 210 (387)
T d1k3ia3 133 VFTIGGSWSGGVFEKNGEVYSPSSKT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 210 (387)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred eeeeccccccccccceeeeecCCCCc--eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCc
Confidence 88887753 358999988764 111110 00 00111223457888888888888888888
Q ss_pred CCCce
Q 014934 321 HSTQP 325 (415)
Q Consensus 321 ~~~~~ 325 (415)
.+...
T Consensus 211 ~~~~~ 215 (387)
T d1k3ia3 211 GSGDV 215 (387)
T ss_dssp TTCEE
T ss_pred ccCcE
Confidence 77643
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.50 E-value=0.26 Score=43.99 Aligned_cols=233 Identities=8% Similarity=0.017 Sum_probs=121.8
Q ss_pred ecCC-CcEEEEEc--CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC------CcEEEEECCCCeeeE
Q 014934 174 DWSS-HNVLAVGL--GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH------GKVQIWDASRCKRVR 244 (415)
Q Consensus 174 ~ws~-~~~la~~~--d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d------g~V~iwd~~~~~~~~ 244 (415)
.+.+ +.++++|. ...+.+||..+......-.......-.+++..+||+++++|+.+ ..+.+||..+.+-..
T Consensus 82 ~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~ 161 (387)
T d1k3ia3 82 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 161 (387)
T ss_dssp EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred EEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceee
Confidence 4445 67777774 35899999999887665544333444567778899999998753 368999998764322
Q ss_pred Eec---------CCC------ccE-EEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEec--c---ccCC--eEEEEEe-
Q 014934 245 TME---------GHR------LRV-GALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS--G---HKSE--VCGLKWS- 300 (415)
Q Consensus 245 ~l~---------~h~------~~V-~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~---h~~~--V~~l~~s- 300 (415)
.-. .+. ... ...-.+++.+..++.++.+.++|............ . +... -.++.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (387)
T d1k3ia3 162 LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDA 241 (387)
T ss_dssp ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEET
T ss_pred cCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeec
Confidence 111 000 011 11112356677777777777777766541111000 0 1111 1222222
Q ss_pred CCCCEEEEEeCCC--------cEEEEECCCCc---eeEEecc---CCCcEEEEEEcCCCCcEEEEEcCC-----CC----
Q 014934 301 YDNRELASGGNDN--------RLFVWNQHSTQ---PVLKYCE---HTAAVKAIAWSPHLHGLLASGGGT-----AD---- 357 (415)
Q Consensus 301 pdg~~lasg~~dg--------~I~iwd~~~~~---~~~~~~~---h~~~V~~l~~sp~~~~llasggg~-----~d---- 357 (415)
.+++.++.|+... ...+.++.... ....... +...-.+.+..++++ +++.||.. .+
T Consensus 242 ~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~-i~v~GG~~~~~~~~~~~~~ 320 (387)
T d1k3ia3 242 VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS-TFITGGQRRGIPFEDSTPV 320 (387)
T ss_dssp TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC-EEEECCBSBCCTTCCCSBC
T ss_pred cCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCe-EEEECCcccCccCCCCcEe
Confidence 3667777776422 23444433221 1111111 111223455567876 88887621 11
Q ss_pred CeEEEEECCCCcEEEE--eeCCC-CEEEEEECCCCCeEEEEEecC--------CCcEEEEECC
Q 014934 358 RCIRFWNTTTNTHLSC--MDTGS-QVCNLVWSKNVNELVSTHGYS--------QNQIIVWRYP 409 (415)
Q Consensus 358 ~~I~iwd~~t~~~~~~--~~~~~-~V~~l~~s~~~~~l~s~~g~~--------dg~I~vw~~~ 409 (415)
..+.+||..+.+-... ..... .-......+||+.|+. |+. +..|.+|+-+
T Consensus 321 ~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~--GG~~~~~~~~~~~~~e~y~Pp 381 (387)
T d1k3ia3 321 FTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNG--GGGLCGDCTTNHFDAQIFTPN 381 (387)
T ss_dssp CCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEE--ECCCCTTCSCCCCEEEEEECG
T ss_pred ceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEE--eCCCcCCCCcccceEEEEcch
Confidence 2478899887753221 11111 1123456799999988 442 2357777743
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.22 Score=42.73 Aligned_cols=186 Identities=12% Similarity=-0.006 Sum_probs=119.1
Q ss_pred eEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEE-EEeCCCcEEEEECCCCC---ccEEEeccccCCeE
Q 014934 222 HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLS-SGSRDKSILQRDIRAQE---DFVSKLSGHKSEVC 295 (415)
Q Consensus 222 ~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~-sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~ 295 (415)
+|+.+.. ..|+-.++.+......+. ....+.+|+|+ .+.|+ +-...+.|...++.... .....+......+.
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence 3444433 358888887765444444 44567788887 34444 44456667777665322 11222333345677
Q ss_pred EEEEeCCCCEEEEE-eCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 296 GLKWSYDNRELASG-GNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 296 ~l~~spdg~~lasg-~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
+|++.+.++.|..+ ...+.|.+.++........+........+++..|....++.+..| ..+.|.-.++........+
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~-~~~~I~r~~~dGs~~~~l~ 159 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLV 159 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEEEEE
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC-CCcceeEeccCCCceeccc
Confidence 89998766655544 556789999998766555555556678999999987778877643 4567887887655444444
Q ss_pred e-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 375 D-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 375 ~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
. .-....++++++.++.|..+ ....+.|...++...
T Consensus 160 ~~~~~~p~gl~iD~~~~~lYw~-d~~~~~I~~~~~dG~ 196 (266)
T d1ijqa1 160 TENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGG 196 (266)
T ss_dssp CSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSC
T ss_pred ccccceeeEEEeeccccEEEEe-cCCcCEEEEEECCCC
Confidence 3 33567899999988888775 355678888887543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.74 E-value=0.73 Score=42.17 Aligned_cols=255 Identities=13% Similarity=0.045 Sum_probs=136.4
Q ss_pred CceeccCCCCCC--CcceeEeecCC-CcEEEEEc--CC----eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEE
Q 014934 155 PYKILDAPALQD--DFYLNLVDWSS-HNVLAVGL--GN----CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV 225 (415)
Q Consensus 155 p~~~ld~~~l~~--~~~i~~l~ws~-~~~la~~~--d~----~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~ 225 (415)
..-+||...+.. .+++..+++|| ++.+|.+. +| .|+++|+.+++.+.... . ......++|.+|++.|+.
T Consensus 110 ~evllD~n~la~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~-~~~~~~~~W~~D~~~~~Y 187 (430)
T d1qfma1 110 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-E-RVKFSCMAWTHDGKGMFY 187 (430)
T ss_dssp CEEEECGGGGCSSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-E-EECSCCEEECTTSSEEEE
T ss_pred eeeecchhhhcccccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-c-cccccceEEcCCCCEEEE
Confidence 344566544443 34455667888 78888874 23 59999999998765332 1 122357899999998776
Q ss_pred EECC----------------CcEEEEECCCCe--eeEEecCC--CccEEEEEee--CCEEEEEe---CCCc--EEEEECC
Q 014934 226 GTSH----------------GKVQIWDASRCK--RVRTMEGH--RLRVGALAWS--SSLLSSGS---RDKS--ILQRDIR 278 (415)
Q Consensus 226 g~~d----------------g~V~iwd~~~~~--~~~~l~~h--~~~V~~l~~~--~~~l~sgs---~dg~--I~iwd~~ 278 (415)
...+ ..|..+.+.+.. .+..+... ...+..+..+ +++++... .++. +.+.|+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~ 267 (430)
T d1qfma1 188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ 267 (430)
T ss_dssp EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred EEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCC
Confidence 5432 247777776642 23334433 2334455444 45554332 2233 4444554
Q ss_pred CCCc-------cEEEeccccCCeEEEEEeCCCCEEEEEe---CCCcEEEEECCCCce--eEE-eccCCCcEEEEEEcCCC
Q 014934 279 AQED-------FVSKLSGHKSEVCGLKWSYDNRELASGG---NDNRLFVWNQHSTQP--VLK-YCEHTAAVKAIAWSPHL 345 (415)
Q Consensus 279 ~~~~-------~~~~~~~h~~~V~~l~~spdg~~lasg~---~dg~I~iwd~~~~~~--~~~-~~~h~~~V~~l~~sp~~ 345 (415)
.... ...........+.-+. +.++.+++... .++.|...++.+... ... +..+...+..-.+...+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~ 346 (430)
T d1qfma1 268 QESNGITGILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS 346 (430)
T ss_dssp GSSSSSCSSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETT
T ss_pred CcccccccccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEEC
Confidence 3221 1222223233333332 22333333332 346777777765432 122 33455555544444444
Q ss_pred CcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEec--CCCcEEEEECCCCc
Q 014934 346 HGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGY--SQNQIIVWRYPTMS 412 (415)
Q Consensus 346 ~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~--~dg~I~vw~~~s~~ 412 (415)
.+|++..-...-..|++++..+++...... ....|..+...++...+.....+ .-.++.-+|+.+.+
T Consensus 347 ~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 347 NFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 556665431123568999999887655443 23446666666666665542221 13578888887653
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.50 E-value=0.79 Score=40.92 Aligned_cols=185 Identities=11% Similarity=0.170 Sum_probs=109.3
Q ss_pred CCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee------C--CEEEEEe-CC---CcEEEEECCCCCccEEE
Q 014934 219 RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS------S--SLLSSGS-RD---KSILQRDIRAQEDFVSK 286 (415)
Q Consensus 219 ~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~------~--~~l~sgs-~d---g~I~iwd~~~~~~~~~~ 286 (415)
+..+++.....+-|.+||+. |+.+..+. .+++..|..- + ..++.++ ++ .+|.+|.+......+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 44566655666679999985 78777765 3566666543 2 1233443 33 35778877643323333
Q ss_pred eccc-------cCCeEEEEE--eCC-CC-EEEEEeCCCcEEEEECC---CC----ceeEEeccCCCcEEEEEEcCCCCcE
Q 014934 287 LSGH-------KSEVCGLKW--SYD-NR-ELASGGNDNRLFVWNQH---ST----QPVLKYCEHTAAVKAIAWSPHLHGL 348 (415)
Q Consensus 287 ~~~h-------~~~V~~l~~--spd-g~-~lasg~~dg~I~iwd~~---~~----~~~~~~~~h~~~V~~l~~sp~~~~l 348 (415)
+... ...+.++|+ ++. |. ++++...+|.+..|.+. .+ +.+..+. -...+-.|++.+....|
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSL 194 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcE
Confidence 3221 124777887 554 54 45667778988888763 33 3444553 34568889999888767
Q ss_pred EEEEcCCCCCeEEEEECCC-----CcEEEEeeC---CCCEEEEEECC--CCC-eEEEEEecCCCcEEEEECCCC
Q 014934 349 LASGGGTADRCIRFWNTTT-----NTHLSCMDT---GSQVCNLVWSK--NVN-ELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 349 lasggg~~d~~I~iwd~~t-----~~~~~~~~~---~~~V~~l~~s~--~~~-~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+++- ++..|..++..- +..+..... ...+-+|+.-. ++. +|+++ ...++++.||+-.+.
T Consensus 195 yisE---E~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivS-sQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 195 YIAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLAS-SQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEE---TTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEE-EGGGTEEEEEESSTT
T ss_pred EEec---CccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEE-cCCCCeEEEEecCCC
Confidence 7754 566666666531 223323222 34677776543 333 66655 345789999997653
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.11 E-value=1.1 Score=40.34 Aligned_cols=176 Identities=9% Similarity=-0.012 Sum_probs=102.9
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCC-----------CeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEEC
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASR-----------CKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDI 277 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~-----------~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~ 277 (415)
....-+++++...++++|+.++ +.|..+.. ........ -..|..++|+++.|+... ++.+..++.
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d~l~v~~-~~~l~~~~~ 112 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGDQVLVST-RNALYSLDL 112 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETTEEEEEE-SSEEEEEES
T ss_pred cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCCEEEEEe-CCCEEEEEe
Confidence 4566788888777888888775 56665321 11111111 136899999988877764 456888887
Q ss_pred CCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec-----cCCCcEEEEEEcCCCCcEEEEE
Q 014934 278 RAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-----EHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 278 ~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~llasg 352 (415)
..-.. ......-..++..+.++|. .++....+|.+.++++.+++...... .-.+.+.+++|++.+..+++..
T Consensus 113 ~~l~~-~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 113 EELSE-FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp SSTTC-EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred ecccc-ccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence 76543 2333334567888888774 57777788999999998875432211 1235577777777766554422
Q ss_pred cCCCCCeEEEE-ECCCCcEEEE-eeCCCCEEEEEECCCCCeEEEE
Q 014934 353 GGTADRCIRFW-NTTTNTHLSC-MDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 353 gg~~d~~I~iw-d~~t~~~~~~-~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
| + ...+- ++.....+.. .+....|.++.|-.+..++++-
T Consensus 190 g---~-~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 190 N---G-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp T---T-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred C---C-ceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 1 1 11110 1111100000 0123468899999887776653
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.69 E-value=1.3 Score=39.15 Aligned_cols=165 Identities=13% Similarity=0.070 Sum_probs=93.8
Q ss_pred CCcEEEEECCCCee-eEEe--cCC-----CccEEEEEee----CC-EEEEEe---CCCcEEEEECCCCCccEEE---ec-
Q 014934 229 HGKVQIWDASRCKR-VRTM--EGH-----RLRVGALAWS----SS-LLSSGS---RDKSILQRDIRAQEDFVSK---LS- 288 (415)
Q Consensus 229 dg~V~iwd~~~~~~-~~~l--~~h-----~~~V~~l~~~----~~-~l~sgs---~dg~I~iwd~~~~~~~~~~---~~- 288 (415)
.|.|.++|+.+.+. ...+ .+. .-....+... +. +|++.. ...+|.++++......+.. +.
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 47888888865432 1111 111 1123344331 22 455443 3456888877654422221 11
Q ss_pred cccCCeEEEEEeCCCCEEEEEeC---------------CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEc
Q 014934 289 GHKSEVCGLKWSYDNRELASGGN---------------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 289 ~h~~~V~~l~~spdg~~lasg~~---------------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 353 (415)
......+.+.+..++.+++|-.. -+...+|....++. ......-...+.|+++|+++.++++..
T Consensus 147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t 225 (340)
T d1v04a_ 147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAEL 225 (340)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce-EEEcCCCCccceeEECCCCCEEEEEeC
Confidence 12245788999889988888311 01233443333332 222233456799999999998888876
Q ss_pred CCCCCeEEEEECCCCcE---EEEeeCCCCEEEEEECC-CCCeEEEEE
Q 014934 354 GTADRCIRFWNTTTNTH---LSCMDTGSQVCNLVWSK-NVNELVSTH 396 (415)
Q Consensus 354 g~~d~~I~iwd~~t~~~---~~~~~~~~~V~~l~~s~-~~~~l~s~~ 396 (415)
..+.|++|++..... ...+......-++.+.+ +|...+++|
T Consensus 226 --~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~ 270 (340)
T d1v04a_ 226 --LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 270 (340)
T ss_dssp --GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred --CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence 788999999875432 23334566778899976 566666543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.23 E-value=1.7 Score=38.57 Aligned_cols=183 Identities=10% Similarity=0.136 Sum_probs=111.3
Q ss_pred cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC------CCCeEEEEEC--CC--cEEEEECC-CCeeeEEecCC----
Q 014934 185 LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN------RNTHLAVGTS--HG--KVQIWDAS-RCKRVRTMEGH---- 249 (415)
Q Consensus 185 ~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp------~g~~la~g~~--dg--~V~iwd~~-~~~~~~~l~~h---- 249 (415)
-.+.|++||+. |+.+.... .+.+..|..-. ...-|++++. ++ .|.+|.+. ....+..+...
T Consensus 48 K~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~ 123 (353)
T d1h6la_ 48 KKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPI 123 (353)
T ss_dssp TTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCE
T ss_pred CcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccccccc
Confidence 34569999985 66666554 34666665432 2234556653 23 57778774 22334444321
Q ss_pred ---CccEEEEEe--e---CC-EEEEEeCCCcEEEEECCCCC------ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 250 ---RLRVGALAW--S---SS-LLSSGSRDKSILQRDIRAQE------DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 250 ---~~~V~~l~~--~---~~-~l~sgs~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
...+..+|. + +. ++++...+|.+..|.+.... ..++.+. -..++.++.+....+.|..+-++.-
T Consensus 124 ~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~LyisEE~~G 202 (353)
T d1h6la_ 124 ASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYIAEEDEA 202 (353)
T ss_dssp ECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTE
T ss_pred ccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEEecCccc
Confidence 123556665 3 22 57778889999888774321 1223332 3467999999999999999988877
Q ss_pred EEEEECCC-----CceeEEecc--CCCcEEEEEEcC--CCC-cEEEEEcCCCCCeEEEEECCCC-cEEEEe
Q 014934 315 LFVWNQHS-----TQPVLKYCE--HTAAVKAIAWSP--HLH-GLLASGGGTADRCIRFWNTTTN-THLSCM 374 (415)
Q Consensus 315 I~iwd~~~-----~~~~~~~~~--h~~~V~~l~~sp--~~~-~llasggg~~d~~I~iwd~~t~-~~~~~~ 374 (415)
|..+++.- ...+....+ ..+.+-.|+.-. ++. +|++|.. .+.+..+||..+. +.+..+
T Consensus 203 iw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQ--G~n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 203 IWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQ--GNSSYAIYERQGQNKYVADF 271 (353)
T ss_dssp EEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEG--GGTEEEEEESSTTCCEEEEE
T ss_pred eEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcC--CCCeEEEEecCCCccccceE
Confidence 77776542 122222222 456788777643 333 6777776 5899999999773 555554
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=1.1 Score=37.86 Aligned_cols=214 Identities=13% Similarity=0.109 Sum_probs=99.9
Q ss_pred CeEEEEECCCCCeEEeEecCCC-CCeEEEEEcCCCCeEEEEEC---------CCcEEEEECCCCeeeE--EecCCCccEE
Q 014934 187 NCVYLWNACSSKVTKLCDLGID-DSVCSVGWANRNTHLAVGTS---------HGKVQIWDASRCKRVR--TMEGHRLRVG 254 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~-~~V~~v~~sp~g~~la~g~~---------dg~V~iwd~~~~~~~~--~l~~h~~~V~ 254 (415)
..|.+||..+++...+-.+... ..-..+.+ +++.++.|+. -..+.+||..+.+... .+......-.
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~ 96 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 96 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence 3688999999887776544321 12222222 5666666652 2357788887654332 2221122223
Q ss_pred EEEeeCCEEEEEeCCCc-----EEEEECCCCCccEEEeccccCC--eEEEEEeCCCCEEEEEeCC-----CcEEEEECCC
Q 014934 255 ALAWSSSLLSSGSRDKS-----ILQRDIRAQEDFVSKLSGHKSE--VCGLKWSYDNRELASGGND-----NRLFVWNQHS 322 (415)
Q Consensus 255 ~l~~~~~~l~sgs~dg~-----I~iwd~~~~~~~~~~~~~h~~~--V~~l~~spdg~~lasg~~d-----g~I~iwd~~~ 322 (415)
+..+.+.+++.|+.++. +..+|..+.. .......... -.++... ++.+++.|+.+ ..+..||..+
T Consensus 97 ~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~ 173 (288)
T d1zgka1 97 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPER 173 (288)
T ss_dssp EEEETTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred ccccceeeEEecceecccccceeeeeccccCc--cccccccccccccceeeee-eecceEecCcccccccceEEEeeccc
Confidence 34445556665554443 4446665543 1111111111 1112222 44555555543 3578888876
Q ss_pred CceeEEeccCC--CcEEEEEEcCCCCcEEEEEcCCC---CCeEEEEECCCCcEEEEeeCC-CCE-EEEEECCCCCeEEEE
Q 014934 323 TQPVLKYCEHT--AAVKAIAWSPHLHGLLASGGGTA---DRCIRFWNTTTNTHLSCMDTG-SQV-CNLVWSKNVNELVST 395 (415)
Q Consensus 323 ~~~~~~~~~h~--~~V~~l~~sp~~~~llasggg~~---d~~I~iwd~~t~~~~~~~~~~-~~V-~~l~~s~~~~~l~s~ 395 (415)
.+... ..... ....+++... ..+++.+|... -..+..+|..+.+....-... ... .+++. .+++.++.
T Consensus 174 ~~~~~-~~~~~~~~~~~~~~~~~--~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~- 248 (288)
T d1zgka1 174 NEWRM-ITAMNTIRSGAGVCVLH--NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVL- 248 (288)
T ss_dssp TEEEE-CCCCSSCCBSCEEEEET--TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEE-
T ss_pred ccccc-cccccccccccccccee--eeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEE-
Confidence 54322 11111 1111222222 24666664211 235677888776543321111 111 12222 25666665
Q ss_pred EecCCC-----cEEEEECCCC
Q 014934 396 HGYSQN-----QIIVWRYPTM 411 (415)
Q Consensus 396 ~g~~dg-----~I~vw~~~s~ 411 (415)
|+.++ .|.+||..+.
T Consensus 249 -GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 249 -GGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp -CCBCSSCBCCEEEEEETTTT
T ss_pred -ecCCCCeecceEEEEECCCC
Confidence 44333 4788888764
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.13 E-value=3.7 Score=38.89 Aligned_cols=56 Identities=7% Similarity=0.001 Sum_probs=42.9
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 357 DRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 357 d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
.|.|.-+|+.+|+.+.....+.++.+-..+..+..+++ |..||.++.+|..++++|
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~--Gt~dg~l~A~Da~TGe~L 520 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFT--GTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEE--ECTTSEEEEEETTTCCEE
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEE--eCCCCeEEEEECCCCcEe
Confidence 36788899999999888876555443333456666666 888999999999999876
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=90.47 E-value=5.2 Score=35.00 Aligned_cols=141 Identities=14% Similarity=0.009 Sum_probs=82.3
Q ss_pred CCcEEEEECCCCCccEEEeccc-------cCCeEEEEE--eCCCC-EEEEEe---CCCcEEEEECCCCcee----EEec-
Q 014934 269 DKSILQRDIRAQEDFVSKLSGH-------KSEVCGLKW--SYDNR-ELASGG---NDNRLFVWNQHSTQPV----LKYC- 330 (415)
Q Consensus 269 dg~I~iwd~~~~~~~~~~~~~h-------~~~V~~l~~--spdg~-~lasg~---~dg~I~iwd~~~~~~~----~~~~- 330 (415)
.|.|.++|+.........+.-. .-...++.. .++|. +|++.. ...+|.||++...... ..+.
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 5889999998765333332211 123455554 34565 344443 3457888887543321 1221
Q ss_pred cCCCcEEEEEEcCCCCcEEEEEc-CCC------------CCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEe
Q 014934 331 EHTAAVKAIAWSPHLHGLLASGG-GTA------------DRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 331 ~h~~~V~~l~~sp~~~~llasgg-g~~------------d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g 397 (415)
......+.|++..++. +++|-. ... -+...+|....++...........++++++|++++|+++ .
T Consensus 147 ~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa-~ 224 (340)
T d1v04a_ 147 KLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIA-E 224 (340)
T ss_dssp TTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEE-E
T ss_pred ccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEE-e
Confidence 2234578898888876 777731 000 122334443444443333445778999999999988886 4
Q ss_pred cCCCcEEEEECCCC
Q 014934 398 YSQNQIIVWRYPTM 411 (415)
Q Consensus 398 ~~dg~I~vw~~~s~ 411 (415)
...++|++|++..-
T Consensus 225 t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 225 LLAHKIHVYEKHAN 238 (340)
T ss_dssp GGGTEEEEEEECTT
T ss_pred CCCCeEEEEEeCCC
Confidence 56788999988643
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.63 E-value=4.5 Score=33.03 Aligned_cols=182 Identities=14% Similarity=0.099 Sum_probs=99.1
Q ss_pred ceeEeecCCCcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEE--------EEc-CCCCeEEEEEC-CCcEEEEEC
Q 014934 169 YLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSV--------GWA-NRNTHLAVGTS-HGKVQIWDA 237 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v--------~~s-p~g~~la~g~~-dg~V~iwd~ 237 (415)
.|.++.+...+++.+| +.+.+.+|-++.|++.++..+..-+-|+.+ .+- +...-++++.- .|.++|++.
T Consensus 105 RI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tp 184 (313)
T d2hu7a1 105 RILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS 184 (313)
T ss_dssp EEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEECC
T ss_pred EEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEecC
Confidence 3556667776666666 567888888889998888776544444444 332 22223444444 666666666
Q ss_pred CCCeeeEEecCCCccEEEEEeeCCEEEEEe----CCCcEEEEECCCCCccEEEecc--------ccCCeEEEEEeCCCCE
Q 014934 238 SRCKRVRTMEGHRLRVGALAWSSSLLSSGS----RDKSILQRDIRAQEDFVSKLSG--------HKSEVCGLKWSYDNRE 305 (415)
Q Consensus 238 ~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs----~dg~I~iwd~~~~~~~~~~~~~--------h~~~V~~l~~spdg~~ 305 (415)
..+..-...... ++.++++- ...-| -+|++.+. ...+.- ..-+|.-+-+.|++++
T Consensus 185 keGS~~~ay~~~----------gnKV~sdyEt~gEsywi-t~D~~s~~--yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L 251 (313)
T d2hu7a1 185 GEGSFSSASISP----------GMKVTAGLETAREARLV-TVDPRDGS--VEDLELPSKDFSSYRPTAITWLGYLPDGRL 251 (313)
T ss_dssp SSEEEEEEEECT----------TSCEEEEEEESSCEEEE-EECTTTCC--EEECCCSSCHHHHHCCSEEEEEEECTTSCE
T ss_pred CCCcccceeEcc----------CceeeeccCCCCceEEE-EEecccCc--eeeeecCcccceeecceEEEeeeeCCCCcE
Confidence 555433322222 22232221 11123 34666554 111111 1234666778999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE
Q 014934 306 LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371 (415)
Q Consensus 306 lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~ 371 (415)
++.+-.||.-.+|. +++.+. ..++.+..+..- +..++.+.+ +...--++..+.+|+++
T Consensus 252 ~iiakrdG~s~lF~--nGk~in---~p~G~~~gat~i--~~~iyfshs-SL~tP~kI~~~~~~~~~ 309 (313)
T d2hu7a1 252 AVVARREGRSAVFI--DGERVE---APQGNHGRVVLW--RGKLVTSHT-SLSTPPRIVSLPSGEPL 309 (313)
T ss_dssp EEEEEETTEEEEEE--TTEEEC---CCSSEEEEEEEE--TTEEEEEEE-ETTEEEEEEEETTCCEE
T ss_pred EEEEecCCchheee--cceEec---CCCCcccceEEE--CCEEEEeec-ccCCCceeEEcCCCCcc
Confidence 99999999999987 555443 333333333222 123444432 14444556666666654
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=88.32 E-value=6.2 Score=32.94 Aligned_cols=219 Identities=15% Similarity=0.143 Sum_probs=103.9
Q ss_pred eeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCC
Q 014934 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 170 i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h 249 (415)
|..|+-.....++.. ++.|+.|-....-..-.-. .....|..|.-- ..+.+ +..||.+..|..............
T Consensus 28 i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~-~~~~~v~~v~~G--~~~~~-al~dg~v~~wG~~~~gq~~~~~~~ 102 (273)
T d1jtdb_ 28 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA-ATQSGVDAIAAG--NYHSL-ALKDGEVIAWGGNEDGQTTVPAEA 102 (273)
T ss_dssp EEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCG-GGGSCCCEEEEC--SSEEE-EEETTEEEEEECCTTSTTCCCGGG
T ss_pred cEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeee-cccccceEEecC--CCcee-eeeeeeeeccCCCcceeecccccc
Confidence 444544444556655 8999999765432211111 112345554431 22222 235899999976432211111111
Q ss_pred CccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 014934 250 RLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY 329 (415)
Q Consensus 250 ~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~ 329 (415)
...+..++......+.. .|+.+..|.-....... ........|..++-. ...++ ...++.++.|-......+..-
T Consensus 103 ~~~~~~i~~~~~~~~~~-~dg~v~~~g~~~~~~~~-~~~~~~~~v~~~~~~--~~~~~-~~~~g~~~~~G~~~~g~~~~~ 177 (273)
T d1jtdb_ 103 RSGVDAIAAGAWASYAL-KDGKVIAWGDDSDGQTT-VPAEAQSGVTALDGG--VYTAL-AVKNGGVIAWGDNYFGQTTVP 177 (273)
T ss_dssp GSSCCEEEEETTEEEEE-ETTEEEEEECCTTSTTS-CCGGGGSSEEEEEEC--SSEEE-EEETTEEEEEECCTTSTTSCC
T ss_pred ccceeEEeeeccccccc-ccccceecccCCCCcee-eeccCCceEEEEecc--ceeee-eecccceeEeecccCCccccc
Confidence 22344444444443333 48899999754433211 111222345444432 22333 334678888876543222222
Q ss_pred ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC-CcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 330 CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-NTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 330 ~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t-~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
......|..|+.... +.++. .|+.|+.|=... ++.-........|..++-.... .++. .||.|..|--
T Consensus 178 ~~~~~~v~~Is~G~~--h~~~l----~dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~~-~~~l----~~g~v~~WG~ 246 (273)
T d1jtdb_ 178 AEAQSGVDDVAGGIF--HSLAL----KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL----KNGKVIAWGS 246 (273)
T ss_dssp GGGSSSEEEEEECSS--EEEEE----ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE----ETTEEEEEST
T ss_pred ccccCCccceeccce--eeEEE----ecCcEEEcCCCCCCccCCCccCCCCcEEEEeCcce-EEEE----ECCEEEEECC
Confidence 234456777765433 23332 378888885433 2221111222345555544332 2332 3788999954
Q ss_pred C
Q 014934 409 P 409 (415)
Q Consensus 409 ~ 409 (415)
.
T Consensus 247 ~ 247 (273)
T d1jtdb_ 247 S 247 (273)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.16 E-value=7.9 Score=31.89 Aligned_cols=176 Identities=16% Similarity=0.149 Sum_probs=83.6
Q ss_pred CeEEEEECCCCCeEEeEecCC-CCCeEEEEEcCCCCeEEEEECCCc-----EEEEECCCCeeeEEec--CCCccEEEEEe
Q 014934 187 NCVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRNTHLAVGTSHGK-----VQIWDASRCKRVRTME--GHRLRVGALAW 258 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~-~~~V~~v~~sp~g~~la~g~~dg~-----V~iwd~~~~~~~~~l~--~h~~~V~~l~~ 258 (415)
..+.+||..+.....+-.+.. ...-.++.+ +++.++.|+.++. +..+|..+......-. ........+..
T Consensus 70 ~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 147 (288)
T d1zgka1 70 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 147 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred chhhhcccccccccccccccceecceecccc--ceeeEEecceecccccceeeeeccccCccccccccccccccceeeee
Confidence 358889988877665543322 111222222 5666666654443 4556766654322111 11122223333
Q ss_pred eCCEEEEEeCC-----CcEEEEECCCCCccEEEeccc--cCCeEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCcee
Q 014934 259 SSSLLSSGSRD-----KSILQRDIRAQEDFVSKLSGH--KSEVCGLKWSYDNRELASGGND-----NRLFVWNQHSTQPV 326 (415)
Q Consensus 259 ~~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~spdg~~lasg~~d-----g~I~iwd~~~~~~~ 326 (415)
...+++.|+.+ ..+..||..... ....... .....+.... ++.+++.|+.+ ..+.++|..+.+..
T Consensus 148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~ 224 (288)
T d1zgka1 148 NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWT 224 (288)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred eecceEecCcccccccceEEEeeccccc--cccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeee
Confidence 45556666543 347888877654 2222211 1111222222 45566666544 35678887765433
Q ss_pred EEeccCCCcE-EEEEEcCCCCcEEEEEcCCC---CCeEEEEECCCCc
Q 014934 327 LKYCEHTAAV-KAIAWSPHLHGLLASGGGTA---DRCIRFWNTTTNT 369 (415)
Q Consensus 327 ~~~~~h~~~V-~~l~~sp~~~~llasggg~~---d~~I~iwd~~t~~ 369 (415)
..-....... .+++.. ++ .+++.||... -..|.+||+.+.+
T Consensus 225 ~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 225 FVAPMKHRRSALGITVH-QG-RIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp ECCCCSSCCBSCEEEEE-TT-EEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred cccCccCcccceEEEEE-CC-EEEEEecCCCCeecceEEEEECCCCE
Confidence 2211111111 122222 34 4777775211 1347889988764
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=83.97 E-value=15 Score=33.19 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=37.2
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee--EEec------CCCccEEEEEeeC
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV--RTME------GHRLRVGALAWSS 260 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~--~~l~------~h~~~V~~l~~~~ 260 (415)
+..++|+|.|+|++|++--..|.|++++..+++.. ..+. .-......|++++
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P 86 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP 86 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence 57889999999998876545799999988776433 2222 1235678899885
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=81.86 E-value=13 Score=30.84 Aligned_cols=184 Identities=15% Similarity=0.102 Sum_probs=90.0
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEe
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKL 287 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 287 (415)
...|..|+-- ..+.++-. ||.|..|-......+..-......|..|+.-....+.- .|+.++.|.......... .
T Consensus 25 ~~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al-~dg~v~~wG~~~~gq~~~-~ 99 (273)
T d1jtdb_ 25 QSGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTV-P 99 (273)
T ss_dssp SSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEE-ETTEEEEEECCTTSTTCC-C
T ss_pred CCCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceeee-eeeeeeccCCCcceeecc-c
Confidence 4567777652 23333334 89999997654433322222233455555433333332 489999998654332111 1
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 288 SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 288 ~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t 367 (415)
......+..++.... ..+. -.|+.+..|.................|..++-.. ...++. .++.+..|....
T Consensus 100 ~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~----~~g~~~~~G~~~ 170 (273)
T d1jtdb_ 100 AEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YTALAV----KNGGVIAWGDNY 170 (273)
T ss_dssp GGGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEE----ETTEEEEEECCT
T ss_pred cccccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEEeccc--eeeeee----cccceeEeeccc
Confidence 112233444443322 2222 2478899997544322211112234455554432 223332 367888887643
Q ss_pred -CcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 368 -NTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 368 -~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
++..........|..++..... .++. .||.|+.|-...
T Consensus 171 ~g~~~~~~~~~~~v~~Is~G~~h-~~~l----~dG~v~~WG~n~ 209 (273)
T d1jtdb_ 171 FGQTTVPAEAQSGVDDVAGGIFH-SLAL----KDGKVIAWGDNR 209 (273)
T ss_dssp TSTTSCCGGGSSSEEEEEECSSE-EEEE----ETTEEEEEECCT
T ss_pred CCcccccccccCCccceecccee-eEEE----ecCcEEEcCCCC
Confidence 2222222234567776654332 2222 268888886543
|