Citrus Sinensis ID: 014954

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
Protein Sequence
MVAWERLGFLLLLWRRRKLGFWVHFVFGLWFGFLVLKPVEGLRPLRERARARSWGDEWLFVRKDENELGPYSEWNITGTYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPTKINGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQESPREKIWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHEGDHDRYHIEGLMESPAVDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNGEGWETMRRELSVLYSRFCKCCCIVDKLVFEMKYYLLICDNR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHEEccccEEEHHHHHHHHHHHccccccccccHHHHHHHcccccccEEEccccccccccccccccEEEEEEEEEccccccccccccEEcccccEEEEEEEcccccccEEEEEEEEEEEEEEccccccccEEEEEEEEEEccccEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccEEEEEEEEcccccccccccccccccEEEEcccccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHccccccHHHHHHHccccccEEEEEccccccccccEEEEEEEEccEEEEEccccccccccccccccccEEEEEEEccccEccEEEEEEEEEEEEEEcccccccccEEEEEEEEEEcccEEEEEEcccccccccccccccccccHHHccccccHHcccccHHHHHHHcccccccccccccEEEEEEEcccccccccccccccEEccEEEccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccc
Coil and Loop (DISEMBL)
MVAWERLGFLLLLWRRRKLGFWVHFVFGLWFGFlvlkpveglrplRERARARSWGDEWLFVrkdenelgpysewnitgtyrgtwkfldstnsssrfRDFRksngnsitelvstptkingvHYVQGVIIFHdvfdnehnvggaqirVEGVYIWPFRQLRMVAhsgkqgelsqeddyilsnpyhllgvfssqvfqesprekiwrrknspiyemEKHCNIEIAAQISRvsstqhegdhdryhieglmespavdddgdcfsplllnATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEhsntqsgaAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKasrpmnngegWETMRRELSVLYSRFCKCCCIVDKLVFEMKYYLLICDNR
Flexible Loop (DISEMBL)
MVAWERLGFLLLLWRRRKLGFWVHFVFGLWFGFLVLKPVEGLRPLRErararswgdewlfvrkdenelgpysewnitgtyrgtWKFLDSTNSSSRFRDFRksngnsitelvstptkinGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFssqvfqesprekiwrrknspiyEMEKHCNIEIAAQISRVSSTQHEGDHDRYHIEGLMESPAVDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNGEGWETMRRELSVLYSRFCKCCCIVDKLVFEMKYYLLICDNR
Low Complexity Region (SEG)
MVAWErlgfllllwrrrklgfwvhfvfglwfgflvlKPVEGLRPLRERARARSWGDEWLFVRKDENELGPYSEWNITGTYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPTKINGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQESPREKIWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHEGDHDRYHIEGLMESPAVDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLfnafataaffkfvvfSIFEMRYLLAIWKASRPMNNGEGWETMRRELSVLYSRFCKCCCIVDKLVFEMKYYLLICDNR
Disordered region (IsUnstruct)
**AWERLGFLLLLWRRRKLGFWVHFVFGLWFGFLVLKPVEGLRPLRERARARSWGDEWLFVRKDENELGPYSEWNITGTYRGTWKFLD******************ITELVSTPTKINGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSG*******EDDYILSNPYHLLGVFSSQVFQESPREKIWRRKNSPIYEMEKHCNIEIAAQIS*************YHIEGLM***AVDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNGEGWETMRRELSVLYSRFCKCCCIVDKLVFEMKYYLLIC***
Disordered Region (DISOPRED)
*****RLGFLLLLWRRRKLGFWVHFVFGLWFGFLVLKPVEGLRPLRERARARSWGD**************YSEWNITGTYRGTWKFLD***********RKSNGNSITELVSTPTKINGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSG***********I*SNPYH***VF***********************MEKHCNIEIAAQISRV****************LMESPAVDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNGEGWETMRRELSVLYSRFCKCCCIVDKLVFEMKYYLLICDN*
Disordered Region (DISEMBL)
MVAWERLGFLLLLWRRRKLGFWVHFVFGLWFGFLVLKPVEGLRPLRERARARSWGDEWLFVRKDENELGPYSEWNITGTYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPTKINGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVA*********QEDDYILSNPYHLLGVFSSQVFQESPREKIWRRKNSPIYEMEKHCNIEIAAQISR*********HDRYHIEGLMESPAVDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNGEGWETMRRELSVLYSRFCKCCCIVDKLVFEMKYYLLICDNR
Disordered Region (DISPRO)
MVAWERLGFLLLLWRRRKLGFWVHFVFGLWFGFLVLKPVEGLRPLRERARARSWGDEWLFVRKDENELGPYSEWNITGTYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPTKINGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQESPREKIWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHEGDHDRYHIEGLMESPAVDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNGEGWETMRRELSVLYSRFCKCCCIVDKLVFEMKYYLLICDNR
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVAWERLGFLLLLWRRRKLGFWVHFVFGLWFGFLVLKPVEGLRPLRERARARSWGDEWLFVRKDENELGPYSEWNITGTYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPTKINGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQESPREKIWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHEGDHDRYHIEGLMESPAVDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNGEGWETMRRELSVLYSRFCKCCCIVDKLVFEMKYYLLICDNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	415	2.2.26 [Sep-21-2011]
O43085	695	DSC E3 ubiquitin ligase c	yes	no	0.320	0.191	0.281	1e-07
P36096	758	Transmembrane E3 ubiquiti	yes	no	0.190	0.104	0.354	2e-07

>sp|O43085|DSC1_SCHPO DSC E3 ubiquitin ligase complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsc1 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 9/142 (6%)

Query: 234 DHDRYHIEGL--MESPAVDDDGDCFSP------LLLNATSVNIEVYYNKAVNYTLMVTFV 285
           +++ YH +G+   + P V   G  +SP         N       V  N  V ++ +  F+
Sbjct: 272 ENEFYHPQGVSTQKMPEVFVSGLVYSPDCNVAFTFSNTKGPRNFVLENHLVRFSSLYIFI 331

Query: 286 SFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATA 345
              Q+ +L+RQM   N+ S   ++S L I  QA +DAY+ +  L+   ++E  +  F + 
Sbjct: 332 VLSQIFVLLRQMR-INSPSHVQRLSFLTIAMQAGLDAYIAIFFLSTNAVIEKGYLPFVSV 390

Query: 346 AFFKFVVFSIFEMRYLLAIWKA 367
           AF   V   +F MRYL  I + 
Sbjct: 391 AFLSLVPSVMFTMRYLALILRV 412

Catalytic component of the DSC E3 ubiquitin ligase complex which is required for the sre1 transcriptional activator proteolytic cleavage to release the soluble transcription factor from the membrane in low oxygen or sterol conditions. The complex plays also an important role in the multivesicular body (MVB) pathway and functions in a post-endoplasmic reticulum pathway for protein degradation.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|P36096|TUL1_YEAST Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 45/79 (56%)

Query: 289 QVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFF 348
           Q+ LL+ QM H+NT S   K+S        ++D  L  L+  A  +V  L+     +AF 
Sbjct: 410 QIYLLLTQMHHTNTPSMVNKISFYCFSMINLVDGSLATLYFVAASVVPELYLPLVISAFS 469

Query: 349 KFVVFSIFEMRYLLAIWKA 367
            F++ SIFE+RYL++I+ +
Sbjct: 470 CFILASIFEIRYLISIYAS 488

E3 ubiquitin ligase protein that mediates ubiquitination of vacuolar proteins such as CPS1, PPN1, PEP12 and other proteins containing exposed hydrophilic residues within their transmembrane domains (TMDs). Ubiquitination of such proteins mediates their sorting into internal vesicles in late endosomes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
255553695	570	protein binding protein, putative [Ricin	0.915	0.666	0.884	0.0
225446404	570	PREDICTED: uncharacterized RING finger p	0.903	0.657	0.872	0.0
224092898	565	predicted protein [Populus trichocarpa]	0.906	0.665	0.855	1e-178
449463100	570	PREDICTED: DSC E3 ubiquitin ligase compl	0.857	0.624	0.874	1e-175
356549908	570	PREDICTED: uncharacterized RING finger p	0.934	0.680	0.787	1e-170
356543843	570	PREDICTED: uncharacterized RING finger p	0.978	0.712	0.762	1e-168
356517498	575	PREDICTED: uncharacterized RING finger p	0.944	0.681	0.758	1e-168
356542969	575	PREDICTED: uncharacterized RING finger p	0.898	0.648	0.789	1e-167
297836826	559	zinc finger family protein [Arabidopsis	0.896	0.665	0.783	1e-165
42569190	559	RING/U-box domain-containing protein [Ar	0.893	0.663	0.782	1e-164

>gi|255553695|ref|XP_002517888.1| protein binding protein, putative [Ricinus communis] gi|223542870|gb|EEF44406.1| protein binding protein, putative [Ricinus communis]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/382 (88%), Positives = 362/382 (94%), Gaps = 2/382 (0%)

Query: 10  LLLLWRRRKLGFWVHFVFGLWFGFLVLKPVEGLRPLRERARARSWGDEWLFVRKDENELG 69
           L   + RR+LGF    VFGLWFGF+VL+PV G+RPL+ERAR  SWGDEWLFV+KDEN+LG
Sbjct: 9   LFYFYERRRLGFVFKLVFGLWFGFVVLRPVAGVRPLKERAR--SWGDEWLFVKKDENDLG 66

Query: 70  PYSEWNITGTYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPTKINGVHYVQGVIIF 129
           P+S WNITGTYRG+WKFLDSTNSSSRF DFRKSNG+SI ELVSTPTKI GVHYVQG IIF
Sbjct: 67  PFSAWNITGTYRGSWKFLDSTNSSSRFPDFRKSNGDSIIELVSTPTKITGVHYVQGAIIF 126

Query: 130 HDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSS 189
           HDVFDN HNVGGAQIRVEGVYIWPFRQLRMVA+SGK+ ELSQE+DYILSNPYHLLGVFSS
Sbjct: 127 HDVFDNAHNVGGAQIRVEGVYIWPFRQLRMVANSGKEAELSQEEDYILSNPYHLLGVFSS 186

Query: 190 QVFQESPREKIWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHEGDHDRYHIEGLMESPAV 249
           QVFQESPR+K+WRRKNSPIYEMEKHCNIEIAAQI+RVSS Q++GD DRYH+EGLM+SPAV
Sbjct: 187 QVFQESPRDKLWRRKNSPIYEMEKHCNIEIAAQITRVSSIQNDGDRDRYHLEGLMQSPAV 246

Query: 250 DDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKV 309
           DDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKV
Sbjct: 247 DDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKV 306

Query: 310 SILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASR 369
           S+LMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASR
Sbjct: 307 SLLMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASR 366

Query: 370 PMNNGEGWETMRRELSVLYSRF 391
           P+N+GEGWETMRRELSVLYSRF
Sbjct: 367 PINSGEGWETMRRELSVLYSRF 388

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446404|ref|XP_002274722.1| PREDICTED: uncharacterized RING finger protein C947.10 [Vitis vinifera] gi|302143312|emb|CBI21873.3| unnamed protein product [Vitis vinifera]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/377 (87%), Positives = 353/377 (93%), Gaps = 2/377 (0%)

Query: 15  RRRKLGFWVHFVFGLWFGFLVLKPVEGLRPLRERARARSWGDEWLFVRKDENELGPYSEW 74
           RR +LGF    V GLW    VL+PV GLRPLR+RA   SWGDEWL++RKDEN LGP+S W
Sbjct: 14  RRGRLGFAFRVVLGLWVVLAVLRPVTGLRPLRDRAH--SWGDEWLYIRKDENALGPFSYW 71

Query: 75  NITGTYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPTKINGVHYVQGVIIFHDVFD 134
           NITGTY+G+W+FLDSTNSS+RF DF KS+GNSI ELVS+PTKI GVHYVQGVIIFHDVFD
Sbjct: 72  NITGTYKGSWRFLDSTNSSARFPDFGKSSGNSIIELVSSPTKITGVHYVQGVIIFHDVFD 131

Query: 135 NEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQE 194
           NEH VGG+QIRVEGVYIWPFRQLRMVA+SGK+GELSQE++YILSNPYHLLGVFSSQVFQE
Sbjct: 132 NEHEVGGSQIRVEGVYIWPFRQLRMVANSGKEGELSQEEEYILSNPYHLLGVFSSQVFQE 191

Query: 195 SPREKIWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHEGDHDRYHIEGLMESPAVDDDGD 254
           SPREKIWR+++SPIYEMEK CNIEIAAQISRVSSTQ++GD DRYH+EGLMESP+VDDDGD
Sbjct: 192 SPREKIWRKRHSPIYEMEKRCNIEIAAQISRVSSTQNDGDRDRYHLEGLMESPSVDDDGD 251

Query: 255 CFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMI 314
           CFSPLLLNATSVNIE YYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMI
Sbjct: 252 CFSPLLLNATSVNIEAYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMI 311

Query: 315 GQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNG 374
           GQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNG
Sbjct: 312 GQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNG 371

Query: 375 EGWETMRRELSVLYSRF 391
           EGWETMRRELSVLYSRF
Sbjct: 372 EGWETMRRELSVLYSRF 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092898|ref|XP_002309743.1| predicted protein [Populus trichocarpa] gi|222852646|gb|EEE90193.1| predicted protein [Populus trichocarpa]

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 326/381 (85%), Positives = 351/381 (92%), Gaps = 5/381 (1%)

Query: 12  LLWRRRKLGFWVHFVFGLWFGFL-VLKPVEGLRPLRERARARSWGDEWLFVRKDENELGP 70
            LWRR  LG  V ++F LWF  L +L+ V GLRPLRERA+  SW DEWLF+RKDEN+LGP
Sbjct: 7   FLWRR-GLGT-VGWIFWLWFVLLGLLQAVVGLRPLRERAQ--SWSDEWLFIRKDENDLGP 62

Query: 71  YSEWNITGTYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPTKINGVHYVQGVIIFH 130
           +S WNITGTYRG+WKFLDS NSSS F DFRKSNG+S+ ELVSTPTKINGVHYVQGVIIFH
Sbjct: 63  FSMWNITGTYRGSWKFLDSANSSSMFPDFRKSNGDSVIELVSTPTKINGVHYVQGVIIFH 122

Query: 131 DVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQ 190
           DVFDN+HN GGAQIRVEGVYIWPFRQLRMVA+SGK+GE SQE+DY+LSNPYHLLGVFSSQ
Sbjct: 123 DVFDNKHNAGGAQIRVEGVYIWPFRQLRMVANSGKEGEFSQEEDYMLSNPYHLLGVFSSQ 182

Query: 191 VFQESPREKIWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHEGDHDRYHIEGLMESPAVD 250
           VF +SP+ KIWRRKN PIYEMEKHCNIEIAAQI+R+SS Q +GD DR+HIEGLMESPA D
Sbjct: 183 VFLDSPQNKIWRRKNWPIYEMEKHCNIEIAAQITRLSSVQSDGDCDRFHIEGLMESPAAD 242

Query: 251 DDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVS 310
           D+GDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVS
Sbjct: 243 DEGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVS 302

Query: 311 ILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRP 370
           ILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLL+IWKA RP
Sbjct: 303 ILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLSIWKAGRP 362

Query: 371 MNNGEGWETMRRELSVLYSRF 391
           MN+GEGWETMRRELSVLYSRF
Sbjct: 363 MNSGEGWETMRRELSVLYSRF 383

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463100|ref|XP_004149272.1| PREDICTED: DSC E3 ubiquitin ligase complex subunit 1-like [Cucumis sativus]

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 314/359 (87%), Positives = 336/359 (93%), Gaps = 3/359 (0%)

Query: 34  LVLKPVEGLRPLRERARARSWGDEWLFVRKDENELGPYSEWNITGTYRGTWKFLDSTNSS 93
           LV +PV+GLRPLRERAR  SWGDEWLFV KD++ELGP+SEWNITGTYRG+W FLDSTNSS
Sbjct: 33  LVSQPVDGLRPLRERAR--SWGDEWLFVTKDKSELGPFSEWNITGTYRGSWSFLDSTNSS 90

Query: 94  SRFRDFRKSNGNSITELVSTPTKINGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWP 153
           SRF DFR SNGNSI EL+STPTKI+GVHYVQGV+IFHDV  NEH+VGG QI+VEGVYIWP
Sbjct: 91  SRFPDFRNSNGNSIIELISTPTKISGVHYVQGVVIFHDVIGNEHDVGGVQIKVEGVYIWP 150

Query: 154 FRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQESPREKIWRRKNSPIYEMEK 213
           FRQLRMVA+SGK GE  QE D ILSNPYHLLGVFSSQVFQESP++K+WRR +SPIYEMEK
Sbjct: 151 FRQLRMVANSGKGGEFKQEVDSILSNPYHLLGVFSSQVFQESPQDKMWRRSHSPIYEMEK 210

Query: 214 HCNIEIAAQISRVSSTQH-EGDHDRYHIEGLMESPAVDDDGDCFSPLLLNATSVNIEVYY 272
           HCNIEIAAQIS  SS Q+  G+HD YHIEGLMESPAVDDDGDCFSPL+LNATSVNIE+YY
Sbjct: 211 HCNIEIAAQISHFSSPQNVNGEHDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIEIYY 270

Query: 273 NKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAG 332
           NKAVNYTLMVTF+SFLQVLLLIRQMEHSNTQSGAAKVS+LMIGQQAIMDAYLCLLHLTAG
Sbjct: 271 NKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSLLMIGQQAIMDAYLCLLHLTAG 330

Query: 333 ILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNGEGWETMRRELSVLYSRF 391
           ILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNGEGWETMRRELSVLYSRF
Sbjct: 331 ILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNGEGWETMRRELSVLYSRF 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549908|ref|XP_003543332.1| PREDICTED: uncharacterized RING finger protein C947.10-like [Glycine max]

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 308/391 (78%), Positives = 346/391 (88%), Gaps = 3/391 (0%)

Query: 1   MVAWERLGFLLLLWRRRKLGFWVHFVFGLWFGFLVLKPVEGLRPLRERARARSWGDEWLF 60
           MVA ERL  L L  RR+ LG  +   F  W   L++ PV GLRPLRER R   W DE LF
Sbjct: 1   MVAAERLK-LFLCKRRKGLGILLQVAFWWWVVLLLVNPVAGLRPLRERTRP--WDDEGLF 57

Query: 61  VRKDENELGPYSEWNITGTYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPTKINGV 120
            RK+E+ LGP+S+WNITGTY+GTWKFLD TN SSRF D RK+NGNS+ EL STPTKI+GV
Sbjct: 58  TRKEESNLGPFSQWNITGTYKGTWKFLDITNGSSRFPDIRKTNGNSVIELASTPTKISGV 117

Query: 121 HYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNP 180
           HYVQGV+IFHDVFDNE++VGG+QIR+EGVYIWPFRQLRMVA+SGK+GEL+Q +DYILSNP
Sbjct: 118 HYVQGVVIFHDVFDNEYDVGGSQIRIEGVYIWPFRQLRMVANSGKEGELNQNEDYILSNP 177

Query: 181 YHLLGVFSSQVFQESPREKIWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHEGDHDRYHI 240
           YHLLGVFSSQV Q+S R+K+ RRK+S I++MEKHCNIEIAAQIS + S  +EG+HD +H+
Sbjct: 178 YHLLGVFSSQVLQDSSRDKMLRRKHSLIHDMEKHCNIEIAAQISHLPSQNNEGEHDHFHL 237

Query: 241 EGLMESPAVDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHS 300
           EGLMESP+ +DDGDCFSPLLLNATSV IEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHS
Sbjct: 238 EGLMESPSANDDGDCFSPLLLNATSVKIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHS 297

Query: 301 NTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRY 360
           +TQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRY
Sbjct: 298 STQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRY 357

Query: 361 LLAIWKASRPMNNGEGWETMRRELSVLYSRF 391
           LLAIWKA+RP++NGEGWETMRRELSVLYSRF
Sbjct: 358 LLAIWKANRPLSNGEGWETMRRELSVLYSRF 388

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543843|ref|XP_003540369.1| PREDICTED: uncharacterized RING finger protein C947.10-like [Glycine max]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 312/409 (76%), Positives = 354/409 (86%), Gaps = 3/409 (0%)

Query: 1   MVAWERLGFLLLLWRRRKLGFWVHFVFGLWFGFLVLKPVEGLRPLRERARARSWGDEWLF 60
           MVA ERL  L L  RRR L   +   F  W   L++ PV GLRPLRER R  SW DE LF
Sbjct: 1   MVAAERLK-LFLCKRRRGLRILLRVAFWWWVVLLLVNPVAGLRPLRERTR--SWDDEGLF 57

Query: 61  VRKDENELGPYSEWNITGTYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPTKINGV 120
            RK+E+ LGP+S+WNITGTY+GTWKFLD TN SSRF D RK+NGNS+ ELVSTPTK++GV
Sbjct: 58  TRKEESNLGPFSQWNITGTYKGTWKFLDITNGSSRFPDIRKTNGNSVIELVSTPTKMSGV 117

Query: 121 HYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNP 180
           HYVQGV++FHDVFDNE++VGG+Q+R+EGVYIWPFRQLRMV +SGK+G+L+Q +DYILSNP
Sbjct: 118 HYVQGVVMFHDVFDNEYDVGGSQVRIEGVYIWPFRQLRMVTNSGKEGDLNQNEDYILSNP 177

Query: 181 YHLLGVFSSQVFQESPREKIWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHEGDHDRYHI 240
           YHLLGVFSSQV Q+S R+K+WRRK+S I++MEKHCNIEIAAQIS + S  +EG+HD +H+
Sbjct: 178 YHLLGVFSSQVLQDSSRDKMWRRKHSLIHDMEKHCNIEIAAQISHLPSQNNEGEHDHFHL 237

Query: 241 EGLMESPAVDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHS 300
           EGLMESP+ DDDGDCFSPLLLNATSV IEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHS
Sbjct: 238 EGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHS 297

Query: 301 NTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRY 360
           +TQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRY
Sbjct: 298 STQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRY 357

Query: 361 LLAIWKASRPMNNGEGWETMRRELSVLYSRFCKCCCIVDKLVFEMKYYL 409
           LLAIWKA+RP++NGEGWETMRRELSVLYSRF         L++E  YYL
Sbjct: 358 LLAIWKANRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHYYL 406

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517498|ref|XP_003527424.1| PREDICTED: uncharacterized RING finger protein C947.10-like [Glycine max]

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 299/394 (75%), Positives = 345/394 (87%), Gaps = 2/394 (0%)

Query: 16  RRKLGFWVHFVFGLWFGFLVLKPVEGLRPLRERARARSWGDEWLFVRKDENELGPYSEWN 75
           RR +G  +    G     L   PV GLRPLR+R    SWGDEW+F RKDE++LGP+S+WN
Sbjct: 20  RRGVGILLRISCGWLVFMLFFSPVAGLRPLRDRTN--SWGDEWVFTRKDESDLGPFSQWN 77

Query: 76  ITGTYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPTKINGVHYVQGVIIFHDVFDN 135
           I+GTYRG WKF+D+TN+S+ F D RK NGNS+ ELVS PTKI GVHYVQGV+IFHDVFDN
Sbjct: 78  ISGTYRGNWKFIDTTNASTGFPDIRKINGNSVIELVSMPTKITGVHYVQGVVIFHDVFDN 137

Query: 136 EHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQES 195
           E+NVGGAQIRVEGVYIWP+RQLRMVA+SGK+G L+Q+ DYILSNPYHLLGVFSSQVFQE 
Sbjct: 138 EYNVGGAQIRVEGVYIWPYRQLRMVANSGKEGGLNQDGDYILSNPYHLLGVFSSQVFQEP 197

Query: 196 PREKIWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHEGDHDRYHIEGLMESPAVDDDGDC 255
            + K+WRRK+SP++ MEKHCN+EIAAQ+SR+SS++HEG+HD + +EGLMESP+VD+DGDC
Sbjct: 198 SQHKMWRRKHSPLHGMEKHCNVEIAAQVSRLSSSKHEGEHDSFQLEGLMESPSVDNDGDC 257

Query: 256 FSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIG 315
           FSPL LNATS+NIEVYYNKAVNYTLMVTF+SFLQVLLLIRQMEHSNTQSGAAKVSILMIG
Sbjct: 258 FSPLQLNATSINIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSILMIG 317

Query: 316 QQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNGE 375
           QQAI+DAYLCL+HLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRP+++GE
Sbjct: 318 QQAIVDAYLCLIHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSSGE 377

Query: 376 GWETMRRELSVLYSRFCKCCCIVDKLVFEMKYYL 409
           GWETMRRELSVLYSRF         L++E  Y+L
Sbjct: 378 GWETMRRELSVLYSRFYGILLGGILLMYEFHYHL 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542969|ref|XP_003539936.1| PREDICTED: uncharacterized RING finger protein C947.10-like [Glycine max]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 296/375 (78%), Positives = 335/375 (89%), Gaps = 2/375 (0%)

Query: 17  RKLGFWVHFVFGLWFGFLVLKPVEGLRPLRERARARSWGDEWLFVRKDENELGPYSEWNI 76
           R +G W+    G     L   PV GLRPLR+R    SWGDEW+F RKDE++LGP+S+WNI
Sbjct: 21  RGVGIWLRIACGWLVFMLFFSPVAGLRPLRDRTN--SWGDEWVFTRKDESDLGPFSQWNI 78

Query: 77  TGTYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPTKINGVHYVQGVIIFHDVFDNE 136
           +GTYRG WKFLD+TN S+ F D RK NGNS+ ELVS PTKI GVHYVQGV+IFHDVFDNE
Sbjct: 79  SGTYRGNWKFLDTTNGSTGFPDIRKINGNSVIELVSMPTKITGVHYVQGVVIFHDVFDNE 138

Query: 137 HNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQESP 196
           +NVGGAQIRVEGVYIWP+RQLRMVA+SGK+  L+Q+ DYILSNPYHLLGVFSSQVFQES 
Sbjct: 139 YNVGGAQIRVEGVYIWPYRQLRMVANSGKEVGLNQDGDYILSNPYHLLGVFSSQVFQESS 198

Query: 197 REKIWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHEGDHDRYHIEGLMESPAVDDDGDCF 256
           + K+WRRK+SP++ MEKHCN+EIAA +SR+SS++HEG+HD + +EGLMESP+VDDDGDCF
Sbjct: 199 QHKMWRRKHSPLHGMEKHCNVEIAAHVSRLSSSKHEGEHDSFQLEGLMESPSVDDDGDCF 258

Query: 257 SPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQ 316
           SPL LNATS+NIEVYYNKA+NYTLMVTF+SFLQVLLLIRQMEHSNTQSGAAKVSILMIGQ
Sbjct: 259 SPLQLNATSINIEVYYNKALNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSILMIGQ 318

Query: 317 QAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNGEG 376
           QAI+DAYLCL HLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRP++NGEG
Sbjct: 319 QAIVDAYLCLTHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEG 378

Query: 377 WETMRRELSVLYSRF 391
           WETMRRELSVLYSRF
Sbjct: 379 WETMRRELSVLYSRF 393

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836826|ref|XP_002886295.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297332135|gb|EFH62554.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 293/374 (78%), Positives = 332/374 (88%), Gaps = 2/374 (0%)

Query: 18  KLGFWVHFVFGLWFGFLVLKPVEGLRPLRERARARSWGDEWLFVRKDENELGPYSEWNIT 77
             G W    F L   F VL+   GLRP+RE AR  SWGDEW F +K+++  GP+S WNIT
Sbjct: 6   NFGVWGLGFFSLSIWFAVLQQANGLRPIRETAR--SWGDEWRFGKKEKSGAGPFSAWNIT 63

Query: 78  GTYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPTKINGVHYVQGVIIFHDVFDNEH 137
           GTYRG+W FLD+ NSSS+F DFRK +GNS+ ELV++PTKI GVHYVQG ++FHDVFDNEH
Sbjct: 64  GTYRGSWNFLDTVNSSSKFPDFRKESGNSVIELVTSPTKITGVHYVQGAVVFHDVFDNEH 123

Query: 138 NVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQESPR 197
           NVGGAQI+VEGVYIWPFRQLR+VA+SGK+G+   EDDY+LSNPYHLLG+FSSQVFQESPR
Sbjct: 124 NVGGAQIKVEGVYIWPFRQLRLVANSGKKGDSGLEDDYLLSNPYHLLGIFSSQVFQESPR 183

Query: 198 EKIWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHEGDHDRYHIEGLMESPAVDDDGDCFS 257
           ++I ++K SPIYEMEKHCNIEIAAQIS+ +S+++ GD DRYHIEGLMESPAVDDDGDCFS
Sbjct: 184 DRILKQKTSPIYEMEKHCNIEIAAQISQSASSENNGDKDRYHIEGLMESPAVDDDGDCFS 243

Query: 258 PLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQ 317
           PL LNATS+N+EVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSI+MIGQQ
Sbjct: 244 PLSLNATSINVEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSIVMIGQQ 303

Query: 318 AIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNGEGW 377
           AIMD+YLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLL+IWKA+RP  +GEGW
Sbjct: 304 AIMDSYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLSIWKATRPSTSGEGW 363

Query: 378 ETMRRELSVLYSRF 391
           ETMRRELS LYSRF
Sbjct: 364 ETMRRELSFLYSRF 377

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569190|ref|NP_179657.2| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|42570835|ref|NP_973491.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|63147406|gb|AAY34176.1| At2g20650 [Arabidopsis thaliana] gi|330251958|gb|AEC07052.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|330251959|gb|AEC07053.1| RING/U-box domain-containing protein [Arabidopsis thaliana]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 292/373 (78%), Positives = 330/373 (88%), Gaps = 2/373 (0%)

Query: 19  LGFWVHFVFGLWFGFLVLKPVEGLRPLRERARARSWGDEWLFVRKDENELGPYSEWNITG 78
            G W    F L   F VL+   GLRP+RE AR  SWGDEWLF +K++   GP+S WNITG
Sbjct: 7   FGVWGFGFFSLSIWFAVLQQANGLRPIRETAR--SWGDEWLFGKKEKGGAGPFSAWNITG 64

Query: 79  TYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPTKINGVHYVQGVIIFHDVFDNEHN 138
           TYRGTWKFLD+ NSSS+F DFRK +GNS+ ELV++PTKI GVHYVQG ++FHDVFDNEHN
Sbjct: 65  TYRGTWKFLDTVNSSSKFPDFRKESGNSVIELVTSPTKITGVHYVQGAVVFHDVFDNEHN 124

Query: 139 VGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQESPRE 198
           VGGAQI+VEGVYIWPFRQLR+VA+SGK+ +   EDDY+LSNPYHLLG+FSSQVFQESPR+
Sbjct: 125 VGGAQIKVEGVYIWPFRQLRLVANSGKKSDSGLEDDYLLSNPYHLLGIFSSQVFQESPRD 184

Query: 199 KIWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHEGDHDRYHIEGLMESPAVDDDGDCFSP 258
           +I ++K SPIYEMEKHCNIEIAAQIS+ +S+++ GD DRY IEGLMESPAVDD+ DCFSP
Sbjct: 185 RILKQKTSPIYEMEKHCNIEIAAQISQSTSSENNGDKDRYQIEGLMESPAVDDEVDCFSP 244

Query: 259 LLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQA 318
           L LNATS+N+EVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSI+MIGQQA
Sbjct: 245 LSLNATSINVEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSIVMIGQQA 304

Query: 319 IMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNGEGWE 378
           IMD+YLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLL+IWKA+RP  +GEGWE
Sbjct: 305 IMDSYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLSIWKATRPSTSGEGWE 364

Query: 379 TMRRELSVLYSRF 391
           TMRRELS LYSRF
Sbjct: 365 TMRRELSFLYSRF 377

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
TAIR|locus:2046036	559	FLY2 "FLYING SAUCER 2" [Arabid	0.840	0.624	0.769	2.7e-148
TAIR|locus:2121333	562	FLY1 "AT4G28370" [Arabidopsis	0.840	0.620	0.769	4.3e-148
DICTYBASE|DDB_G0278501	666	DDB_G0278501 "C3HC4 type zinc	0.428	0.267	0.361	7e-32

TAIR|locus:2046036 FLY2 "FLYING SAUCER 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1448 (514.8 bits), Expect = 2.7e-148, P = 2.7e-148
 Identities = 270/351 (76%), Positives = 307/351 (87%)

Query:    41 GLRPLRERARARSWGDEWLFVRKDENELGPYSEWNITGTYRGTWKFLDSTNSSSRFRDFR 100
             GLRP+RE AR  SWGDEWLF +K++   GP+S WNITGTYRGTWKFLD+ NSSS+F DFR
Sbjct:    29 GLRPIRETAR--SWGDEWLFGKKEKGGAGPFSAWNITGTYRGTWKFLDTVNSSSKFPDFR 86

Query:   101 KSNGNSITELVSTPTKINGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMV 160
             K +GNS+ ELV++PTKI GVHYVQG ++FHDVFDNEHNVGGAQI+VEGVYIWPFRQLR+V
Sbjct:    87 KESGNSVIELVTSPTKITGVHYVQGAVVFHDVFDNEHNVGGAQIKVEGVYIWPFRQLRLV 146

Query:   161 AHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQESPREKIWRRKNSPIYEMEKHCNIEIA 220
             A+SGK+ +   EDDY+LSNPYHLLG+FSSQVFQESPR++I ++K SPIYEMEKHCNIEIA
Sbjct:   147 ANSGKKSDSGLEDDYLLSNPYHLLGIFSSQVFQESPRDRILKQKTSPIYEMEKHCNIEIA 206

Query:   221 AQISRVSSTQHEGDHDRYHIEGLMESPAVDDDGDCFSPLLLNATSVNIEVYYNKAVNYTL 280
             AQIS+ +S+++ GD DRY IEGLMESPAVDD+ DCFSPL LNATS+N+EVYYNKAVNYTL
Sbjct:   207 AQISQSTSSENNGDKDRYQIEGLMESPAVDDEVDCFSPLSLNATSINVEVYYNKAVNYTL 266

Query:   281 MVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLXX 340
             MVTFVSFLQVLLLIRQMEHSNTQSGAAKVSI+MIGQQAIMD+YLCLLHLTAGILVESL  
Sbjct:   267 MVTFVSFLQVLLLIRQMEHSNTQSGAAKVSIVMIGQQAIMDSYLCLLHLTAGILVESLFN 326

Query:   341 XXXXXXXXXXXXXSIFEMRYLLAIWKASRPMNNGEGWETMRRELSVLYSRF 391
                          SIFEMRYLL+IWKA+RP  +GEGWETMRRELS LYSRF
Sbjct:   327 AFATAAFFKFVVFSIFEMRYLLSIWKATRPSTSGEGWETMRRELSFLYSRF 377

GO:0005886 "plasma membrane" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0009827 "plant-type cell wall modification" evidence=ISS

TAIR|locus:2121333 FLY1 "AT4G28370" [Arabidopsis thaliana (taxid:3702)]

 Score = 1446 (514.1 bits), Expect = 4.3e-148, P = 4.3e-148
 Identities = 270/351 (76%), Positives = 306/351 (87%)

Query:    41 GLRPLRERARARSWGDEWLFVRKDENELGPYSEWNITGTYRGTWKFLDSTNSSSRFRDFR 100
             GLRP+RE+ R  SW DEWLF RK E E+GP+S WNITGTYRGTWKFL+S NSSS+F+DF+
Sbjct:    32 GLRPIREKPR--SWSDEWLFGRKQEAEVGPFSAWNITGTYRGTWKFLNSLNSSSKFQDFQ 89

Query:   101 KSNGNSITELVSTPTKINGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMV 160
             K NGNS+ ELV+ PTKI GVHYVQGV++FHDVFDNE NVGGAQI +EGVYIWPFRQLR+V
Sbjct:    90 KENGNSVVELVAVPTKITGVHYVQGVVVFHDVFDNEQNVGGAQINLEGVYIWPFRQLRLV 149

Query:   161 AHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQESPREKIWRRKNSPIYEMEKHCNIEIA 220
             A+SGK+ +  QED+ +LSNPYHLLG+FSSQVFQESPR+++ +RK SP+ EMEKHCNIEIA
Sbjct:   150 ANSGKESDSGQEDNNLLSNPYHLLGIFSSQVFQESPRDRLLKRKLSPVNEMEKHCNIEIA 209

Query:   221 AQISRVSSTQHEGDHDRYHIEGLMESPAVDDDGDCFSPLLLNATSVNIEVYYNKAVNYTL 280
             AQ+SRV+S+++ GD + YH+EGLMESP V DDGDCFSPLLLNATSVN+EVYYNKAVNYTL
Sbjct:   210 AQVSRVASSENNGDKNYYHMEGLMESPGVGDDGDCFSPLLLNATSVNVEVYYNKAVNYTL 269

Query:   281 MVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLXX 340
             MVTFVSFLQVLLLIRQMEH NTQSGAAKVSI+MIGQQAIMDAYLCLLHLTAGILVESL  
Sbjct:   270 MVTFVSFLQVLLLIRQMEHGNTQSGAAKVSIVMIGQQAIMDAYLCLLHLTAGILVESLFN 329

Query:   341 XXXXXXXXXXXXXSIFEMRYLLAIWKASRPMNNGEGWETMRRELSVLYSRF 391
                          SIFEMRYLLAIWKA+RP N+GEGWETMRRELS LYSRF
Sbjct:   330 AFATAAFFKFVVFSIFEMRYLLAIWKATRPSNSGEGWETMRRELSFLYSRF 380

GO:0008270 "zinc ion binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=IMP

GO:0012505 "endomembrane system" evidence=IDA

GO:0048363 "mucilage pectin metabolic process" evidence=IMP

GO:0080001 "mucilage extrusion from seed coat" evidence=IMP

DICTYBASE|DDB_G0278501 DDB_G0278501 "C3HC4 type zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 317 (116.6 bits), Expect = 7.0e-32, Sum P(2) = 7.0e-32
 Identities = 68/188 (36%), Positives = 115/188 (61%)

Query:   209 YEM-EKHCNIEIAAQISRVSSTQHEGDHDRYHI-EGLMESPAVDDDGDCFSPLLLNATSV 266
             +EM  K  N ++ + +  +++  +E D  ++ I  G++ES  ++        L +  +  
Sbjct:   307 FEMITKEQNEKVISDLL-INNYVNE-DESKFFIANGVLESTYLN------LTLSVKVSGF 358

Query:   267 NIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCL 326
             ++ ++ +K +NY +MV+  SF+Q+ +LIRQM+++ TQ+ AA+VSI  IG Q IMDAYLCL
Sbjct:   359 DLPLFRSKMMNYVVMVSLCSFIQIFVLIRQMDYTGTQTSAARVSIYTIGIQTIMDAYLCL 418

Query:   327 LHLTAGILVESLXXXXXXXXXXXXXXXSIFEMRYLLAIWKASRPMNNGEGWETMRRELSV 386
             +HL+AG++++ L               ++FEMRYLL I KA  P    +GWE++RR++S+
Sbjct:   419 IHLSAGVIMDYLFNAFATASFFQFVTFALFEMRYLLIILKARSPSAFADGWESLRRQISI 478

Query:   387 LYSRFCKC 394
              Y RF  C
Sbjct:   479 FYLRFYSC 486

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018609001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (525 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	415
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	100.0
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	96.61
PF11145	909	DUF2921: Protein of unknown function (DUF2921); In	90.86

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.6e-53  Score=429.88  Aligned_cols=346  Identities=47%  Similarity=0.641  Sum_probs=295.7

Q ss_pred             HHHhhhhcccccccccchhhhh---hcccCccceeeccCCCccCCccccceeEEEEeEEE-----EeCC-CCcccccccc
Q 014954           29 LWFGFLVLKPVEGLRPLRERAR---ARSWGDEWLFVRKDENELGPYSEWNITGTYRGTWK-----FLDS-TNSSSRFRDF   99 (415)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~N~tG~~~G~W~-----~~~~-~n~s~~~p~~   99 (415)
                      ...|++-+++.+|.++||+...   +..|++||+|++...|-.++.+.+||+++..|+|+     +.|+ .|++..++|+
T Consensus        55 t~~g~i~l~~~ng~~~lr~t~~~~~~~~~~~ew~s~k~~~nv~~~~s~~nI~~s~~g~~k~n~~~fln~~ln~~s~f~d~  134 (636)
T KOG0828|consen   55 TSDGLIELPVGNGDSHLRHTSVMTGNWNILPEWLSGKVSPNVTWHTSLRNIVMSQSGTWKANLYEFLNGNLNSSSKFLDF  134 (636)
T ss_pred             hcceeEEeecCCCchhhccceeecCCceeccccccccccCCccccccceeEEeeeccchhhhHHHHhccccccchhhhhh
Confidence            4578889999999999999852   45899999999999999999999999999999999     7776 9999999999


Q ss_pred             ccccceEEEEEecCCCccCCeeEEEEEEEEEeeecCCCCccceeEEEeeeeecCCCceEEEEeccCcCCCCCCCcccccC
Q 014954          100 RKSNGNSITELVSTPTKINGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSN  179 (415)
Q Consensus       100 t~~~G~~~~~L~~~~t~~~~v~~v~g~~~i~D~~~s~~~~~~~~~rl~GV~~Wp~rq~~~~~ts~~eg~l~~~~d~f~sn  179 (415)
                      .+.+|+.+.++.-.|++++||++|+|+..+||.++..+.+++.                   +.-+|..  +.|++-+.+
T Consensus       135 ~~~n~~SVy~~~~~~~ki~~I~~v~gst~fh~~Fd~~h~~~~~-------------------~~yk~~~--~~D~~el~~  193 (636)
T KOG0828|consen  135 EKENGNSVYELVFHPTKITGIHYVQGSTDFHPNFDVIHWLLKD-------------------SPYKDAP--PLDGTELFP  193 (636)
T ss_pred             HhhcCCceEEEEeccccccceEEEeeccccccccccchhhccc-------------------ccccccC--Cccchhccc
Confidence            9999999999999999999999999999999988655442221                   1122222  334444444


Q ss_pred             ccc----ccccccccccccchhHHHHHhhcCCCccCCCCcceEEeeeEecCCCCCCC---CCCCceEEEEEEEcCCCCCC
Q 014954          180 PYH----LLGVFSSQVFQESPREKIWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHE---GDHDRYHIEGLMESPAVDDD  252 (415)
Q Consensus       180 ~~~----l~~~~ssq~l~~~~~~~~l~~k~~~~~~~~~~Cef~i~~Ql~Pl~~~~~e---~E~~~l~msGvl~SP~~~~~  252 (415)
                      +++    -+|+||+|.+|+.+++++++.|+....+||+||+....+|++.+++.+++   .+....|+.+++++|+++++
T Consensus       194 ~~~n~~~~~~i~s~qd~Qes~~~~~fk~e~~~~~eme~~~N~~t~~qi~~~~s~eN~~~~~~~n~~q~~pl~~vsgl~ys  273 (636)
T KOG0828|consen  194 LLQNRSLELGIFSSQDFQESPRDRVFKEEESPCSEMEKHCNIETAAQISTLKSSENEFYNGDKNSYQKEPLMEVSGLVYS  273 (636)
T ss_pred             hhhcccchhcchhhhhhhhCccchhhhcccchHHHHHHhhhhHHHHHHHHhhhhhccccCCCcchhcCCceecccCcccC
Confidence            444    38999999999999999999999999999999999999999999877763   34445566666666666666


Q ss_pred             CCCCceEEEeEEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014954          253 GDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAG  332 (415)
Q Consensus       253 ~DCG~~Lel~l~G~k~Ev~~~kir~yll~~alv~liQI~LLirQMk~S~TPStlSRVSf~TIamqaI~Dg~l~l~~L~~a  332 (415)
                      +||++.|.+|.+....|++.+++++|.+++.+.++.|+++|++||.+ +|||.++|+||+||+||+++|+++|+.+++.+
T Consensus       274 pDC~v~l~l~ntkg~~~vl~n~aVr~tll~~~~~~~~~~~Ll~q~~~-~sps~v~rlSf~~i~mqa~mD~~Lall~lta~  352 (636)
T KOG0828|consen  274 PDCFVPLTLNNTKGNVEVLYNKAVRYTLLYIFIVLSQIFLLLRQMRI-NSPSHVQRLSFLTIAMQAGMDAYLALLFLTAN  352 (636)
T ss_pred             CCcCcceeeeccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-cCchhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            69999999987766699999999999999999999999999999988 57999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc---------CCCCCCccHHHHHHHHHHHHHHHhhHHH
Q 014954          333 ILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKAS---------RPMNNGEGWETMRRELSVLYSRFCKCCC  396 (415)
Q Consensus       333 l~~e~lfL~f~~~AFl~FIl~sifEmRYLi~IwksQ---------~pE~~~e~we~lRR~ls~ly~rFY~~Li  396 (415)
                      .+.+++|+||+++||++|+.+++||||||+.|||+|         +|..++.+|+.+|++++-.+-+++|+|+
T Consensus       353 ~vve~lylpfvtaAF~~fV~~siFemRYLlsI~k~q~~~~~~~a~Rp~T~~~~~n~~r~~~~~~e~s~~g~l~  425 (636)
T KOG0828|consen  353 AVVESLYLPFVTAAFFKFVVFSIFEMRYLLSIWKVQNSNMPPPATRPSTSNSSNNNTRQSNASNENSPWGILL  425 (636)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCccccCcccccccccCCcchhhH
Confidence            999999999999999999999999999999999976         4556677899999998754444444433

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=8.3e-05  Score=74.87  Aligned_cols=137  Identities=15%  Similarity=-0.086  Sum_probs=104.2

Q ss_pred             CcceEEeeeEecCCCCCCCCCC--------CceEEE-EEEEcCCCCCCCCCCceEEEeEEeehhHHHHHHHHHHHHHHHH
Q 014954          214 HCNIEIAAQISRVSSTQHEGDH--------DRYHIE-GLMESPAVDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTF  284 (415)
Q Consensus       214 ~Cef~i~~Ql~Pl~~~~~e~E~--------~~l~ms-Gvl~SP~~~~~~DCG~~Lel~l~G~k~Ev~~~kir~yll~~al  284 (415)
                      .|+|.|..|+.|.-+--..+|.        +.+-|- --..||      ||+..+-.|  -.+++...+.+..++...+.
T Consensus         1 msyYqIivcilasisYiillevialdLGvldNif~ppr~a~st------d~a~rlg~~--Nv~lw~~~~s~~khl~~~ia   72 (374)
T COG5540           1 MSYYQIIVCILASISYIILLEVIALDLGVLDNIFMPPRKAQST------DMARRLGNN--NVLLWNIMRSMLKHLDTRIA   72 (374)
T ss_pred             CceEEEEEEEecccchhhhhhhhccccCCccccccCccccCCc------hHHHhcCCc--chhHHHHHHHHHHHHhhhhh
Confidence            4999999999887543332222        112111 013467      999997653  23377777888899999999


Q ss_pred             HHHHHHHHHHHHhcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 014954          285 VSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAI  364 (415)
Q Consensus       285 v~liQI~LLirQMk~S~TPStlSRVSf~TIamqaI~Dg~l~l~~L~~al~~e~lfL~f~~~AFl~FIl~sifEmRYLi~I  364 (415)
                      .+.+|+||         |||++.+.+++|.   +++|  +...++..+-... .|.+..+.++-.|+..+.++.|+.+.+
T Consensus        73 ~~~i~~yl---------tPs~v~~~~~~c~---NlvD--l~s~yf~~~d~~~-~yd~~~i~~~s~~~~~s~~~vR~~~~~  137 (374)
T COG5540          73 SSDIDAYL---------TPSGVFMNRLRCR---NLVD--LISGYFGDGDDGR-EYDETRIPPPSRDLRGSGRKVRGSARQ  137 (374)
T ss_pred             hhhhhhee---------CccceehhhhcCc---chhh--hhheeeecccccc-cccccccCCccchhhcccceeeeeecc
Confidence            99999998         9999999999999   7789  4445555555544 788999999999999999999999999


Q ss_pred             HHhcCCCCC
Q 014954          365 WKASRPMNN  373 (415)
Q Consensus       365 wksQ~pE~~  373 (415)
                      ...|-.|++
T Consensus       138 ~~~sv~E~n  146 (374)
T COG5540         138 EVPSVEERN  146 (374)
T ss_pred             cCCchhhhH
Confidence            999887753

>PF11145 DUF2921: Protein of unknown function (DUF2921); InterPro: IPR021319 This eukaryotic family of proteins has no known function

Probab=90.86  E-value=13  Score=43.30  Aligned_cols=208  Identities=19%  Similarity=0.209  Sum_probs=116.3

Q ss_pred             eeEEEEEEEEEeeecCCCCccceeEEEeeeeecCCCceEEEEeccCcCCCCCCCcccccCcccccccccccccccchhHH
Q 014954          120 VHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNPYHLLGVFSSQVFQESPREK  199 (415)
Q Consensus       120 v~~v~g~~~i~D~~~s~~~~~~~~~rl~GV~~Wp~rq~~~~~ts~~eg~l~~~~d~f~sn~~~l~~~~ssq~l~~~~~~~  199 (415)
                      .-+|...+++    .......-.+|-+|||| =| .-|+|-|--=.+         ...|         .+.+.+     
T Consensus       516 llNVSy~i~~----~~~~~~~~~~isaEGvY-D~-~~G~lclVGCR~---------v~~~---------~~~~~~-----  566 (909)
T PF11145_consen  516 LLNVSYEISL----SGSISSNSSQISAEGVY-DP-KTGRLCLVGCRD---------VRLN---------WNISSN-----  566 (909)
T ss_pred             eeEEEEEEEE----cccccceEEEEEEEeee-eC-CCCeEEEEeccc---------cccC---------cccccc-----
Confidence            5678888887    12222234899999999 66 566666632222         0111         111111     


Q ss_pred             HHHhhcCCCccCCCCcceEEeeeEecCCCCCCCCCCCceEEEEEEEcCCCCCCCCCCceEEEeEEeehhH----HHHHHH
Q 014954          200 IWRRKNSPIYEMEKHCNIEIAAQISRVSSTQHEGDHDRYHIEGLMESPAVDDDGDCFSPLLLNATSVNIE----VYYNKA  275 (415)
Q Consensus       200 ~l~~k~~~~~~~~~~Cef~i~~Ql~Pl~~~~~e~E~~~l~msGvl~SP~~~~~~DCG~~Lel~l~G~k~E----v~~~ki  275 (415)
                                +-+..|++.+-.|..|++..      ..-+..|.|.|---.+|+=+.=.+++...++-++    ....+.
T Consensus       567 ----------~~~~DC~I~V~vq~pp~~~~------~~~~~kg~I~S~R~~~DpL~F~~~~l~~~~~~~~~q~~~~i~R~  630 (909)
T PF11145_consen  567 ----------ESSMDCEILVTVQFPPLDAK------VNPTIKGSISSTRDKSDPLYFEPLDLSTYPIYYRKQAEESIWRM  630 (909)
T ss_pred             ----------CCCCCeeEEEEEEcCCCCCC------CCCcEEEEEEeccCCCCCccccceeeeeccceeccccchhhhhh
Confidence                      34689999999999998643      2234567777753334445665666654444332    222223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccC-CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH--HHH
Q 014954          276 VNYTLMVTFVSFLQVLLLIRQMEHSN-TQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVE-----------SL--FNA  341 (415)
Q Consensus       276 r~yll~~alv~liQI~LLirQMk~S~-TPStlSRVSf~TIamqaI~Dg~l~l~~L~~al~~e-----------~l--fL~  341 (415)
                      ---.++.++..-+-+.+..-|+-+.+ .|..+--||+-+++.|++.=+.--+. =+-|++..           .-  -..
T Consensus       631 d~E~i~~~~s~tl~~~~~~~QL~~~k~~~~~~P~iSlvML~v~aLGy~~pLv~-n~EaLf~~~~~~~~~~~~~~~w~e~~  709 (909)
T PF11145_consen  631 DLEGIMRVISLTLSCVFIGLQLFHVKKHPDVLPYISLVMLGVQALGYMIPLVL-NFEALFKSSHNRQNIFLDSGGWLEVN  709 (909)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccchHhHHHHHHHHHhccchhhc-CHHHHcCcCCCCceEEeecCchhHHH
Confidence            33445555555555556666766644 67778889999999997743321111 11112210           00  011


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCC
Q 014954          342 FATAAFFKFVVFSIFEMRYLLAIWKASRPMNNG  374 (415)
Q Consensus       342 f~~~AFl~FIl~sifEmRYLi~IwksQ~pE~~~  374 (415)
                      =.++=++..+.| ++..|.+-.+|++|......
T Consensus       710 e~~vr~ltmvAf-lL~lRL~qlvw~aR~~~~~~  741 (909)
T PF11145_consen  710 EVMVRLLTMVAF-LLQLRLLQLVWSARIRDGAR  741 (909)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHhhcccccc
Confidence            123333344444 56889999999999876443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	415
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 65/451 (14%), Positives = 135/451 (29%), Gaps = 87/451 (19%)

Query: 12  LLWRRRKLGFWVHFVFGLWFGFLVLKPVEGLRPLRERARARSWGDE--WL-FVRKDENEL 68
           LL  R      +  V G   G    K    L              +  WL     +  E 
Sbjct: 144 LLELRPAKNVLIDGVLG--SG----KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 69  GPYSEWNITGTYRGTWKFLDSTNSSSRFRDFRKSNGNSITELVSTPTKINGVHYVQGVII 128
                  +   Y+    +   ++ SS  +    S    +  L+ +        Y   +++
Sbjct: 198 VLEMLQKLL--YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP------YENCLLV 249

Query: 129 FHDVFDNEH----NVGGAQI----RVEGVYIWPFRQLRMVAHSGKQGELSQEDDYILSNP 180
             +V + +     N+   +I    R + V       L     +     +S +   +   P
Sbjct: 250 LLNVQNAKAWNAFNL-SCKILLTTRFKQV----TDFLS----AATTTHISLDHHSMTLTP 300

Query: 181 YHLLGVFSSQV---FQESPREKIWRRKNSPIYEMEKHCNIEIAAQISRVSST----QHEG 233
             +  +    +    Q+ PRE       +P        +I IA  I    +T    +H  
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREV---LTTNPR-----RLSI-IAESIRDGLATWDNWKHV- 350

Query: 234 DHDRYH--IEGLMESPAVDDDGDCFSPLLLNATSVNI-----EVYYNKAVNYTLMVTFVS 286
           + D+    IE  +      +    F  L +   S +I      + +   +   +MV    
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 287 FLQVLLLIRQME------HSNTQSGAAKVSILMIGQQAIMDAYLCLLHL-TAGILVESLF 339
             +  L+ +Q +       S       K+       ++I+D Y       +  ++   L 
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 340 NAFATAAFFKFVV-----------FSIFEMRYLLAIWKASRPMNNGEGWETMRRELSVL- 387
                  F+  +             ++F M +L   +   +  ++   W      L+ L 
Sbjct: 471 Q-----YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525

Query: 388 ----YSRF-CKCCCIVDKLVFEMKYYLLICD 413
               Y  + C      ++LV  +  +L   +
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIE 556

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 56/414 (13%), Positives = 120/414 (28%), Gaps = 124/414 (29%)

Query: 75  NITGTYRGTWKFLDS-TNSSSRF-RDFRKSNGNSITELVSTPTK---INGVHYVQGVIIF 129
            ++GT R  W  L        +F  +  + N   +   + T  +   +    Y++     
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE----Q 115

Query: 130 HDVFDNE------HNVGGAQIRVEGVYIWPFRQLR-----------MVAH----SGKQ-- 166
            D   N+      +NV     R++     P+ +LR           ++      SGK   
Sbjct: 116 RDRLYNDNQVFAKYNVS----RLQ-----PYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 167 -GELSQEDDYILSNPYHLLGVFSSQVFQESPREKIW---RRKNSPIYEMEKHCNI----- 217
             ++           +    +F             W   +  NSP   +E    +     
Sbjct: 167 ALDVCLSYKVQCKMDF---KIF-------------WLNLKNCNSPETVLEMLQKLLYQID 210

Query: 218 -EIAAQISRVSSTQHEGDHDRYHIEGLMESPA-------VDD----------DGDCFSPL 259
               ++    S+ +      +  +  L++S         + +          +  C   +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--KI 268

Query: 260 LLNATSVNIEVYYNKAVNYTLMVTFVSFLQVL-------LLIRQMEHSNTQ--SGAAKVS 310
           LL  T+   +V    +   T  ++       L       LL++ ++             +
Sbjct: 269 LL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 311 ---ILMIGQQ-----AIMDAYLCLLHLTAGILVESLFNAFATAAFFK-FVVFSIFE---- 357
              + +I +      A  D +  +       ++ES  N    A + K F   S+F     
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 358 --MRYLLAIWKASRPMNNGEGWETMRRELSVLYSRFCKCCCIVDKLVFEMKYYL 409
                L  IW              +   ++ L+        +V+K   E    +
Sbjct: 387 IPTILLSLIWFDVIK-------SDVMVVVNKLHKY-----SLVEKQPKESTISI 428

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00