Citrus Sinensis ID: 014998

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
Protein Sequence
MWRNVVVRRLISYSQSNRSQHSSTELGFLVNRKCHGVRSSSSASASDSATGAAADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEKIVELSSSSETVPVESEDMNRKKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPSYAE
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccHHHHccccccHHHHHHHHHHHccccHHHHHHHcccHHHHccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccccccccccccHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHEEEEEEEEcccccccEEEccEEEEEEcccccccccccccccccccccccccccHcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccccHEEHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccEEEEcccccccccccHHHHHHcHHcccccccccccccEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
MWRNVVVRRLISYSqsnrsqhsstelgflvnrkchgvrssssasasdsatgaaadpfsLIRHYGRCYWELSKARLSMLVVATsgtgfalgsgstidlaglcwTCTGTMMVAASANSLNQLFEIsndakmkrtmrrplpsgrisvRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVytplkqihpvntwvgaivgaippllgwTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLylvplgylaydwgvtsgwFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFhrltdnqqslpeedsEKIVELSsssetvpvesedmnrkkKLSYYSSlgrqvrapvayasvapfpflpapsyae
Flexible Loop (DISEMBL)
MWRNVVVRRLIsysqsnrsqhsstelGFLVNRKCHGVRSsssasasdsatgaaADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEKIVelssssetvpvesedmnrkkKLSYYSSLGRQVRAPVAYASVapfpflpapsyae
Low Complexity Region (SEG)
MWRNVVVRRLIsysqsnrsqhssTELGFLVNRKCHGVRssssasasdsatgaaaDPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLEsslitlaisaaafsfYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEKIvelssssetvpveseDMNRKKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPSYAE
Disordered region (IsUnstruct)
****VVVRRLI****************FLVN***********************DPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEI*****************RISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLT***************************************YSSLGRQVRAPVAYASVAPFPFL*******
Disordered Region (DISOPRED)
**************************************************************YGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPE********************************************YASVAPFPFLPAPSY**
Disordered Region (DISEMBL)
MWRNVVVRRLISYS*********TELGFLVNRKC******************AADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDN*******************************KKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPSYAE
Disordered Region (DISPRO)
MWRNVVVRRLISYSQSNRSQHSSTELGFLVNRKC************************LIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEKIVELSSSSET***********************VRAPVAYASVAPFPFLPAPSYA*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWRNVVVRRLISYSQSNRSQHSSTELGFLVNRKCHGVRSSSSASASDSATGAAADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEKIVELSSSSETVPVESEDMNRKKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPSYAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	414	2.2.26 [Sep-21-2011]
O64886	431	Protoheme IX farnesyltran	yes	no	0.814	0.781	0.696	1e-144
Q8CFY5	443	Protoheme IX farnesyltran	yes	no	0.620	0.580	0.446	7e-52
Q12887	443	Protoheme IX farnesyltran	yes	no	0.620	0.580	0.430	3e-46
Q5R460	443	Protoheme IX farnesyltran	yes	no	0.620	0.580	0.426	3e-45
Q9Y7Y4	387	Protoheme IX farnesyltran	yes	no	0.688	0.736	0.364	2e-44
Q4WP81	512	Protoheme IX farnesyltran	yes	no	0.828	0.669	0.337	7e-43
Q4I5G1	507	Protoheme IX farnesyltran	yes	no	0.681	0.556	0.372	3e-41
Q5BCK8	506	Protoheme IX farnesyltran	yes	no	0.690	0.565	0.340	3e-41
Q11SZ7	286	Protoheme IX farnesyltran	yes	no	0.666	0.965	0.316	2e-40
Q6C0L2	471	Protoheme IX farnesyltran	yes	no	0.712	0.626	0.354	4e-40

>sp|O64886|COX10_ARATH Protoheme IX farnesyltransferase, mitochondrial OS=Arabidopsis thaliana GN=COX10 PE=2 SV=4

 Score =  511 bits (1317), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/356 (69%), Positives = 289/356 (81%), Gaps = 19/356 (5%)

Query: 59  LIRHYGRCYWELSKARLSMLVVATSGTGFALGSG-STIDLAGLCWTCTGTMMVAASANSL 117
           L  HY RCYWELSKA+LSMLVVATSGTG+ LG+G + I   GLC+TC GTMM+AASANSL
Sbjct: 90  LGHHYARCYWELSKAKLSMLVVATSGTGYILGTGNAAISFPGLCYTCAGTMMIAASANSL 149

Query: 118 NQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASN 177
           NQ+FEISND+KMKRTM RPLPSGRISV HAV WA+  G +G  LLA K NML AGLA++N
Sbjct: 150 NQIFEISNDSKMKRTMLRPLPSGRISVPHAVAWATIAGASGACLLASKTNMLAAGLASAN 209

Query: 178 LILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHF 237
           L+LYAFVYTPLKQ+HP+NTWVGA+VGAIPPLLGW AA G +S N MILPAALYFWQIPHF
Sbjct: 210 LVLYAFVYTPLKQLHPINTWVGAVVGAIPPLLGWAAASGQISYNSMILPAALYFWQIPHF 269

Query: 238 MALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLE 297
           MALA+LCRNDYAAGGY+M+SL D SG+R A VALRNC Y++PLG++AYDWG+TS WFCLE
Sbjct: 270 MALAHLCRNDYAAGGYKMLSLFDPSGKRIAAVALRNCFYMIPLGFIAYDWGLTSSWFCLE 329

Query: 298 SSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLT-DNQQSLPEEDS 356
           S+L+TLAI+A AFSFYRDRT  KARKMFHASLL+LPVFMSGLL HR++ DNQQ L EE  
Sbjct: 330 STLLTLAIAATAFSFYRDRTMHKARKMFHASLLFLPVFMSGLLLHRVSNDNQQQLVEE-- 387

Query: 357 EKIVELSSSSETVPVESEDMNRKKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPSY 412
                 +  + +V  E +   RKK+++         + PVAYAS APFPFLPAPS+
Sbjct: 388 ------AGLTNSVSGEVKTQRRKKRVA---------QPPVAYASAAPFPFLPAPSF 428

Converts protoheme IX and farnesyl diphosphate to heme O.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: -

>sp|Q8CFY5|COX10_MOUSE Protoheme IX farnesyltransferase, mitochondrial OS=Mus musculus GN=Cox10 PE=2 SV=1

 Score =  204 bits (520), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 116/260 (44%), Positives = 154/260 (59%), Gaps = 3/260 (1%)

Query: 69  ELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAK 128
            LSK +L+ LVV+T+  GFAL  G   D +    T  GT + + +ANS+NQ FE+  D+ 
Sbjct: 158 RLSKIKLTALVVSTTSAGFALAPGP-FDWSCFLLTSLGTGLASCAANSINQFFEVPFDSN 216

Query: 129 MKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPL 188
           M RT  RPL  G+IS   AV++A+   V G ALL W  N LT  L   N+ LY   YTPL
Sbjct: 217 MNRTKNRPLVRGQISPLLAVSFATCCAVPGVALLTWGVNPLTGALGVFNIFLYTCCYTPL 276

Query: 189 KQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDY 248
           K++   NTWVGA+VGAIPP++GWTAA G +    ++L   LY WQ PHF AL++  R DY
Sbjct: 277 KRVSITNTWVGAVVGAIPPVMGWTAATGSLDAGALLLGGILYSWQFPHFNALSWGLREDY 336

Query: 249 AAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAA 308
           + GGY M+S+   +  R   VALR+CL L+ L   A    +T+  F + S  I L IS  
Sbjct: 337 SRGGYCMMSVTHPALCRR--VALRHCLALIALSTAAPVLDITTWVFPVISLPINLYISYL 394

Query: 309 AFSFYRDRTTQKARKMFHAS 328
            F FY D   + +RK+F  S
Sbjct: 395 GFRFYVDADRRSSRKLFFCS 414

Converts protoheme IX and farnesyl diphosphate to heme O.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q12887|COX10_HUMAN Protoheme IX farnesyltransferase, mitochondrial OS=Homo sapiens GN=COX10 PE=1 SV=3

 Score =  186 bits (472), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 112/260 (43%), Positives = 149/260 (57%), Gaps = 3/260 (1%)

Query: 69  ELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAK 128
            LSK +L+ LVV+T+  GFAL  G   D      T  GT + + +ANS+NQ FE+  D+ 
Sbjct: 159 RLSKIKLTALVVSTTAAGFALAPGP-FDWPCFLLTSVGTGLASCAANSINQFFEVPFDSN 217

Query: 129 MKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPL 188
           M RT  RPL  G+IS   AV++A+   V G A+L    N LT  L   N+ LY   YTPL
Sbjct: 218 MNRTKNRPLVRGQISPLLAVSFATCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPL 277

Query: 189 KQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDY 248
           K+I   NTWVGA+VGAIPP++GWTAA G +     +L   LY WQ PHF AL++  R DY
Sbjct: 278 KRISIANTWVGAVVGAIPPVMGWTAATGSLDAGAFLLGGILYSWQFPHFNALSWGLREDY 337

Query: 249 AAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAA 308
           + GGY M+S+      R   VALR+CL L+ L   A    +T+  F + +  I   IS  
Sbjct: 338 SRGGYCMMSVTHPGLCRR--VALRHCLALLVLSAAAPVLDITTWTFPIMALPINAYISYL 395

Query: 309 AFSFYRDRTTQKARKMFHAS 328
            F FY D   + +R++F  S
Sbjct: 396 GFRFYVDADRRSSRRLFFCS 415

Converts protoheme IX and farnesyl diphosphate to heme O.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q5R460|COX10_PONAB Protoheme IX farnesyltransferase, mitochondrial OS=Pongo abelii GN=COX10 PE=2 SV=1

 Score =  182 bits (463), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/260 (42%), Positives = 148/260 (56%), Gaps = 3/260 (1%)

Query: 69  ELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAK 128
            LSK +L+ LVV+T+  GFAL  G   D      T  GT + + +ANS+NQ FE+  D+ 
Sbjct: 159 RLSKIKLTALVVSTTAAGFALAPGP-FDWPCFLLTSVGTGLASCAANSINQFFEVPFDSN 217

Query: 129 MKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPL 188
           M RT  RPL  G+IS   AV++A+   V G A+L    N LT  L   N+ LY   YTPL
Sbjct: 218 MNRTKNRPLVRGQISPLLAVSFATCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPL 277

Query: 189 KQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDY 248
           K+I   NTWVGA+VGAIPP++GWTAA G +     +L   LY WQ PHF AL++  R  Y
Sbjct: 278 KRISIANTWVGAVVGAIPPVMGWTAATGSLDAGAFLLGGILYSWQFPHFNALSWGLREGY 337

Query: 249 AAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAA 308
           + GGY M+S+      R   VALR+CL L+ L   A    +T+  F + +  I   IS  
Sbjct: 338 SRGGYCMMSVTHPGLCRR--VALRHCLALLVLSAAAPVLDITTWTFPIMALPINAYISYL 395

Query: 309 AFSFYRDRTTQKARKMFHAS 328
            F FY D   + +R++F  S
Sbjct: 396 GFRFYVDADRRSSRRLFFCS 415

Converts protoheme IX and farnesyl diphosphate to heme O.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q9Y7Y4|COX10_SCHPO Protoheme IX farnesyltransferase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox10 PE=3 SV=1

 Score =  180 bits (456), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 17/302 (5%)

Query: 41  SSASASDSATGAAADPFSLIRHYGR-----------CYWELSKARLSMLVVATSGTGFAL 89
           S+   S S   AA DP  L     R            + EL K RL++LVV ++ + +AL
Sbjct: 50  STLDTSTSTANAAPDPQVLTFLSKRMQAAPLYPKPSAFLELGKPRLTVLVVLSTMSSYAL 109

Query: 90  GSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVT 149
                +    L W   GT + + SAN+ NQ  E   D +M RT  RP+P G I   +A  
Sbjct: 110 APYPGLSFNTLAWLTMGTALCSISANAFNQSMEPMLDCQMARTRSRPIPRGAIRPEYAWL 169

Query: 150 WASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLL 209
           +A+  G+AGT+ +++  N     L   N++LY  +YTPLK+I  VNTWVG++VGAIPPL+
Sbjct: 170 FATLTGIAGTS-MSFLVNPTVGWLGLGNIVLYMGIYTPLKRISIVNTWVGSLVGAIPPLM 228

Query: 210 GWTAAVGHVSLN---GMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRT 266
           GW A  G   L+   G+I  A L+ WQ PHF A + + ++DY   GY+M++  + +    
Sbjct: 229 GWAACSGGDLLSHPGGLITAAMLFAWQFPHFNAFSTMVKDDYKKCGYQMMAWKNPA--LN 286

Query: 267 ALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFH 326
           A V+LR  L  +PL Y     G+   W+ + ++   + + A A+ FYR+R  Q AR +F 
Sbjct: 287 ARVSLRYALAFLPLSYAYISTGLVGPWYAVPATGTNMFLIARAWKFYRNRNYQNARSLFF 346

Query: 327 AS 328
           AS
Sbjct: 347 AS 348

Converts protoheme IX and farnesyl diphosphate to heme O.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q4WP81|COX10_ASPFU Protoheme IX farnesyltransferase, mitochondrial OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cox10 PE=3 SV=1

 Score =  175 bits (443), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 132/391 (33%), Positives = 195/391 (49%), Gaps = 48/391 (12%)

Query: 14  SQSNRSQHSSTELGFLVNRKCHGVRSSSSAS--------ASDSATGAAADPFSLIRHYGR 65
           S+S  SQ +S EL     ++     + ++A+        +S  +T ++A P + +R    
Sbjct: 100 SESITSQSTSQELPHRRRKRLKEEAAKNNAAETELPPDASSQLSTLSSALPATSLRRKLA 159

Query: 66  CYWELSKARLSMLVVATSGTGFAL---GSGSTIDLA------------GLCWTCTGTMMV 110
            +  L+K RLS L+V T+ + + +    S  T+D +               +  TGT + 
Sbjct: 160 AFLALTKPRLSFLIVLTTTSAYGMYPISSLLTLDPSMTPLPTLSTSTLTFLYLTTGTFLS 219

Query: 111 AASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLT 170
           + SAN+LN L E   DA M RT  RPL  G +S R AV +A +   AG  LL    N  T
Sbjct: 220 SCSANTLNMLLEPKYDALMSRTRNRPLVRGLLSRRAAVLFAIATAAAGLGLLYIGTNPTT 279

Query: 171 AGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAA---------------- 214
             L+ASN+ LYAFVYTPLK+I  +NTWVGA+VG IPPL+GWTAA                
Sbjct: 280 TALSASNICLYAFVYTPLKRISVINTWVGAVVGGIPPLMGWTAAAGQTATTGHDSWRDML 339

Query: 215 VGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNC 274
               S+ G +L   L+ WQ PHF AL+Y+ R +Y A GYRM++  + +    A VALR  
Sbjct: 340 FSKDSIGGWLLGGILFAWQFPHFNALSYMIREEYKAAGYRMLAWTNPAAN--ARVALRYS 397

Query: 275 LYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQ-KARKMFHASLLYLP 333
           L + P     +  GV    F + S+     +   A+ F+R +     AR++F AS+  LP
Sbjct: 398 LLMFPFSVGLWWVGVVGNGFLVGSTAANGWLVKEAYKFWRHQGANGSARRLFWASIWQLP 457

Query: 334 VFMSGLLFHR------LTDNQQSLPEEDSEK 358
           + + G L  +      + +N    P ED + 
Sbjct: 458 ILLVGGLVTKKGLWDGVWNNVFGQPVEDEDD 488

Converts protoheme IX and farnesyl diphosphate to heme O.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q4I5G1|COX10_GIBZE Protoheme IX farnesyltransferase, mitochondrial OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=COX10 PE=3 SV=1

 Score =  169 bits (429), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/314 (37%), Positives = 159/314 (50%), Gaps = 32/314 (10%)

Query: 59  LIRHYGRCYWELSKARLSMLVVATSGTGFALG------SGSTIDLAGLC-----WTCTGT 107
           L RH   C   L+K RL+MLVV T+   +AL       S ST +   L      +   GT
Sbjct: 151 LRRHLSACL-SLAKPRLTMLVVLTAMATYALYPVPEMLSPSTTETPSLSPLTLLFLTIGT 209

Query: 108 MMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKAN 167
              +ASAN+LN L+E S DAKM RT  RPL    IS R AV +A   G  GT  L +  N
Sbjct: 210 TFCSASANALNMLYEPSTDAKMTRTRNRPLVRNLISKRAAVLFAILSGFVGTGALYFGVN 269

Query: 168 MLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHV--------- 218
              +GL  +N+++YA +YTPLK +   NTW+GA+VG IPPL+GW AA G           
Sbjct: 270 PTVSGLGFANIVIYAGMYTPLKAVTAFNTWIGAVVGGIPPLMGWAAAAGETATKDGSWRE 329

Query: 219 --------SLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVA 270
                   S+ G ++   L+ WQ PHFMAL++  R +Y   G RM++  + +  R   VA
Sbjct: 330 LLFASDGSSIGGWVMAGLLFAWQFPHFMALSWPIREEYKKAGLRMLAWTNPA--RNGRVA 387

Query: 271 LRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYR-DRTTQKARKMFHASL 329
           LR     +PL       GVT   F + S  I   +   +  F+R +     AR +F AS+
Sbjct: 388 LRYSFVFIPLCLSLCAAGVTEWSFAVTSFPINAWLIRESVRFWRYEGNKGSARGLFWASV 447

Query: 330 LYLPVFMSGLLFHR 343
            +LP  M   L H+
Sbjct: 448 WHLPGVMILALLHK 461

Converts protoheme IX and farnesyl diphosphate to heme O.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q5BCK8|COX10_EMENI Protoheme IX farnesyltransferase, mitochondrial OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cox10 PE=3 SV=1

 Score =  169 bits (428), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 169/320 (52%), Gaps = 34/320 (10%)

Query: 56  PFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTI-----DLAGL---------- 100
           P + +R     ++ L+K RLS LV+ ++ + + +   S+I      +A L          
Sbjct: 142 PKTSLRRKLAAFFALTKPRLSFLVLLSTTSAYGIYPVSSILALDPTIAPLPTLSTSTLTF 201

Query: 101 CWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTA 160
            +  TGT + A SAN+LN +FE   DA+M RT  RPL  G ++ R AV +A +    G  
Sbjct: 202 LYLTTGTFLSACSANTLNMIFEPKYDAQMSRTRNRPLVRGLVTRRAAVFFAIATAAVGLG 261

Query: 161 LLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAA------ 214
           LL +  N    GL+A+N+ LYAFVYTPLK++H +NTW+GAIVG IPP++GW AA      
Sbjct: 262 LLYFGTNPTVTGLSAANIALYAFVYTPLKRMHVINTWIGAIVGGIPPMMGWVAAAGQGAT 321

Query: 215 VGHVSLNGMIL----------PAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQ 264
            GH +   M+              L+ WQ PHF AL++  R +Y   GY+M+   + +  
Sbjct: 322 TGHDTWRDMLFGENSLGGWLLGGILFAWQFPHFNALSHTIREEYKGAGYKMLCWTNPA-- 379

Query: 265 RTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQ-KARK 323
           R A VALR  + + PL    +  G+    F + S++    ++  A+ F++ +     AR 
Sbjct: 380 RNARVALRYSVLMFPLSIGLWWAGIVGHGFLVSSTVANGWLTKEAYGFWKHQGANGTARG 439

Query: 324 MFHASLLYLPVFMSGLLFHR 343
           +F AS+  LP+ + G L  +
Sbjct: 440 LFWASIWQLPILLVGALVTK 459

Converts protoheme IX and farnesyl diphosphate to heme O.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q11SZ7|COXX_CYTH3 Protoheme IX farnesyltransferase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ctaB PE=3 SV=2

 Score =  167 bits (423), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 152/284 (53%), Gaps = 8/284 (2%)

Query: 65  RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEIS 124
           + Y++L+K RL+  V  +SG G+ L     +D   L     G   +  SAN +NQ+ E  
Sbjct: 6   QAYFKLTKFRLTSTVAFSSGMGYILAERGQVDWLNLVLFLIGGFSITVSANIINQIIERE 65

Query: 125 NDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFV 184
           +D  MKRT  RPLP G I+V+ A+  ++   +AGT +LA  + +    L+  +L++Y+F+
Sbjct: 66  SDKLMKRTASRPLPEGIITVQQAIITSALFLIAGTVILAVYSTLNALILSLISLVIYSFI 125

Query: 185 YTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLC 244
           YTPLK + P+  ++GA  GA PP++GW A  G       +L A  + WQ PHF A+A++ 
Sbjct: 126 YTPLKTVSPIAVFIGAFPGAFPPMIGWIAVTGEYGWEPGVLFAIQFLWQFPHFWAIAWVL 185

Query: 245 RNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLA 304
             +Y   G +++   D   + TA + +   L L+PLG+L Y +G++     + S+ I LA
Sbjct: 186 DEEYKKAGIKLLPTKDGRSKHTATIIMTYTLCLLPLGFLPYLFGMSG----ITSAYIALA 241

Query: 305 ISAAAF----SFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRL 344
                F      +++ + + A  +   S LYLP+     +  ++
Sbjct: 242 CGILFFFQTMYLWKECSVKAALLLMFGSFLYLPIVQIAFVLDKI 285

Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.

Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) (taxid: 269798)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q6C0L2|COX10_YARLI Protoheme IX farnesyltransferase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COX10 PE=3 SV=1

 Score =  166 bits (419), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 111/313 (35%), Positives = 162/313 (51%), Gaps = 18/313 (5%)

Query: 67  YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
           Y  L+K RL++LVV ++ + +AL +   + L  L +   GT + + SAN++N   E + D
Sbjct: 162 YVALTKPRLTVLVVLSAMSSYAL-TPEAVSLTNLLFLTVGTALCSGSANAINMGREPAYD 220

Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
           + M RT  RP+  G ++   A T+A   G  GTA L +  N   A L ASN+ LY  +YT
Sbjct: 221 SMMTRTRGRPVVRGAVTPNQAFTFAGITGTVGTAALYFGVNPTVAILGASNIALYGGLYT 280

Query: 187 PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGM-ILPAALYFWQIPHFMALAYLCR 245
            LK+ H +NTWVGA+VGAIPPL+GW A+ G +   G   L   LY WQ PHF AL+Y  R
Sbjct: 281 TLKRKHIINTWVGAVVGAIPPLMGWAASGGSLLHPGAWCLAGLLYAWQFPHFNALSYSIR 340

Query: 246 NDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAI 305
           ++Y   GY M +  +      A V LR  L + PL      + VT  WF L+SS++   +
Sbjct: 341 DEYKKAGYVMTAWKNPG--LNARVGLRYALLMFPLCVGLSYYNVTDWWFVLDSSVLNAWM 398

Query: 306 SAAAFSFYRDRTTQK--------------ARKMFHASLLYLPVFMSGLLFHRLTDNQQSL 351
           +  AF F++                    ARK+F  S+++LP  +   + H+        
Sbjct: 399 AWWAFKFWQQENVNIALAAAGKQYSQNPFARKLFWGSVVHLPGVLLLAMIHKKGQWDWLF 458

Query: 352 PEEDSEKIVELSS 364
              + EK   LSS
Sbjct: 459 GPSEDEKKKTLSS 471

Converts protoheme IX and farnesyl diphosphate to heme O.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
225453238	422	PREDICTED: protoheme IX farnesyltransfer	0.871	0.855	0.795	1e-168
449432323	448	PREDICTED: protoheme IX farnesyltransfer	0.900	0.832	0.732	1e-162
356576869	411	PREDICTED: protoheme IX farnesyltransfer	0.893	0.900	0.729	1e-158
255568065	333	protoheme IX farnesyltransferase, putati	0.799	0.993	0.795	1e-152
357445029	402	Protoheme IX farnesyltransferase [Medica	0.852	0.878	0.720	1e-149
224064812	335	predicted protein [Populus trichocarpa]	0.799	0.988	0.771	1e-147
297824479	425	hypothetical protein ARALYDRAFT_483579 [	0.903	0.88	0.646	1e-144
18406556	431	protoheme IX farnesyltransferase [Arabid	0.814	0.781	0.696	1e-142
357445027	452	Protoheme IX farnesyltransferase [Medica	0.852	0.780	0.632	1e-141
326489061	433	predicted protein [Hordeum vulgare subsp	0.852	0.815	0.665	1e-134

>gi|225453238|ref|XP_002265039.1| PREDICTED: protoheme IX farnesyltransferase, mitochondrial [Vitis vinifera] gi|297734684|emb|CBI16735.3| unnamed protein product [Vitis vinifera]

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 288/362 (79%), Positives = 323/362 (89%), Gaps = 1/362 (0%)

Query: 52  AAADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVA 111
           +A D   L RHYGRCY ELSKARLSMLVVATSGTGF LGSG+ ID  GL WTC GTMMVA
Sbjct: 60  SARDAVDLARHYGRCYCELSKARLSMLVVATSGTGFVLGSGNIIDFGGLFWTCAGTMMVA 119

Query: 112 ASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTA 171
           ASANSLNQ+FEI+NDAKMKRTMRRPLPSGR+S+ HAVTWASSVGVAGTA+LA KANML A
Sbjct: 120 ASANSLNQVFEINNDAKMKRTMRRPLPSGRLSIPHAVTWASSVGVAGTAILACKANMLAA 179

Query: 172 GLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYF 231
           GLAASNL+LYAFVYTPLKQIHPVNTWVGA+VGAIPPLLGW AA G VSLNGMILPAALYF
Sbjct: 180 GLAASNLLLYAFVYTPLKQIHPVNTWVGAVVGAIPPLLGWAAAAGQVSLNGMILPAALYF 239

Query: 232 WQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTS 291
           WQIPHFMALAYLCR+DYAAGGYRM+S ADASG+RTA+VALRN LYL+PLG++AYDWGVTS
Sbjct: 240 WQIPHFMALAYLCRDDYAAGGYRMLSFADASGRRTAVVALRNSLYLIPLGFIAYDWGVTS 299

Query: 292 GWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSL 351
           GWFCLESSL+TLAISAAAF+FYRDRT QKAR+MFHASLLYLPVFMSGL+ HR+TDNQQ L
Sbjct: 300 GWFCLESSLLTLAISAAAFAFYRDRTKQKARRMFHASLLYLPVFMSGLIVHRVTDNQQGL 359

Query: 352 PEEDSEKIVELSSSSETVPVESEDMNRKKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPS 411
            +++SEK VELSSSS T+  E+E++  + K + + + G   ++PVAYASVAPFPFLPAP 
Sbjct: 360 VQDNSEKTVELSSSSGTLEQENENVRSQNK-ARWPAAGSPAKSPVAYASVAPFPFLPAPI 418

Query: 412 YA 413
           Y+
Sbjct: 419 YS 420

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432323|ref|XP_004133949.1| PREDICTED: protoheme IX farnesyltransferase, mitochondrial-like [Cucumis sativus] gi|449515420|ref|XP_004164747.1| PREDICTED: protoheme IX farnesyltransferase, mitochondrial-like [Cucumis sativus]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 282/385 (73%), Positives = 318/385 (82%), Gaps = 12/385 (3%)

Query: 35  HGVRSSSSASASDSATGAAA-----DPFSLIRHYGRCYWELSKARLSMLVVATSGTGFAL 89
           HGVR  SS +   S   A A     +   L RHYG CYWELSKARLSMLVVATSGTGF L
Sbjct: 70  HGVRVFSSVADPSSLASAPAVSRVREVVDLARHYGSCYWELSKARLSMLVVATSGTGFVL 129

Query: 90  GSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVT 149
           GSGST+DLAGLCWTC GTMMVAASANSLNQ+FEI NDAKMKRT RRPLPSGRI+V HA T
Sbjct: 130 GSGSTMDLAGLCWTCAGTMMVAASANSLNQVFEIKNDAKMKRTRRRPLPSGRITVPHAFT 189

Query: 150 WASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLL 209
           WA+SVG+AGTA+LA K N+L AGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLL
Sbjct: 190 WATSVGLAGTAMLAAKTNILAAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLL 249

Query: 210 GWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALV 269
           GW AA G +SLN MILPAALYFWQIPHFMALAYLCR+DYAAGGY+M SLADASGQRTA V
Sbjct: 250 GWAAASGQISLNAMILPAALYFWQIPHFMALAYLCRDDYAAGGYKMFSLADASGQRTAAV 309

Query: 270 ALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASL 329
           ALRNC+YLVPLG+LAYDWG+TSGWFCLESS++TLAISA AFSFYR  T QKAR+MFHASL
Sbjct: 310 ALRNCVYLVPLGFLAYDWGITSGWFCLESSILTLAISATAFSFYRHCTMQKARRMFHASL 369

Query: 330 LYLPVFMSGLLFHRLTDNQQSLPEEDSEKIVELSSSSETVPVESEDMNRKKKLSYYSSLG 389
           LYLPVFMSGLLFHRL+DN+Q++ E+ SE++++     +    +     +++ ++      
Sbjct: 370 LYLPVFMSGLLFHRLSDNEQTMEEDSSERMLDGLVQEDRYTAQENKTEQRQSVA------ 423

Query: 390 RQVRAPVAYASVAPFPFLPAPSYAE 414
            Q R PVAYAS+APFPFLP P YA+
Sbjct: 424 -QSRPPVAYASIAPFPFLPVPVYAD 447

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576869|ref|XP_003556552.1| PREDICTED: protoheme IX farnesyltransferase, mitochondrial-like [Glycine max]

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 278/381 (72%), Positives = 323/381 (84%), Gaps = 11/381 (2%)

Query: 38  RSSSSASASD----SATGAAADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGS 93
           R ++SA++ D    SA+ A  D  SL RHYGRCYWELSKARLSMLVVATSGTGF LGSGS
Sbjct: 33  RVAASATSFDISSASASKATTDFVSLTRHYGRCYWELSKARLSMLVVATSGTGFVLGSGS 92

Query: 94  TIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASS 153
            +DL+ L  TC GTMMVAASANSLNQ+FEI+NDAKMKRT RRPLPSGRI++ HAV WASS
Sbjct: 93  AVDLSALSCTCLGTMMVAASANSLNQVFEINNDAKMKRTSRRPLPSGRITIPHAVGWASS 152

Query: 154 VGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTA 213
           VG+AGTALLA + NML AGLAASNLILYAFVYTPLKQIHP+NTWVGA+VGAIPPLLGW A
Sbjct: 153 VGLAGTALLATQTNMLAAGLAASNLILYAFVYTPLKQIHPINTWVGAVVGAIPPLLGWAA 212

Query: 214 AVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRN 273
           A   +SLNGMILPAALYFWQIPHFMALAYLCR+DYAAGG++M SLADASG RTALVALRN
Sbjct: 213 ASNDISLNGMILPAALYFWQIPHFMALAYLCRDDYAAGGFKMYSLADASGHRTALVALRN 272

Query: 274 CLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLP 333
            +YL+PLG+LAYDWG+TSGWFCLES+ +TLAISAAAFSFYR+RT +KAR+MFHASLLYLP
Sbjct: 273 SIYLIPLGFLAYDWGLTSGWFCLESAALTLAISAAAFSFYRNRTKEKARRMFHASLLYLP 332

Query: 334 VFMSGLLFHRLTDNQQSLPEEDSEKIVELSSSSETVPVESE--DMNRKKKLSYYSSLGRQ 391
           VFMSGLL HR ++N+Q L E+ ++  V+ +SS+E+  ++ +  D N K +  Y +    +
Sbjct: 333 VFMSGLLIHRRSENEQFL-EDKAKGFVKSASSTESSELDDDNGDQNIKARRPYRT----E 387

Query: 392 VRAPVAYASVAPFPFLPAPSY 412
            R PV+YASVAPFPFLPAPSY
Sbjct: 388 ARPPVSYASVAPFPFLPAPSY 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568065|ref|XP_002525009.1| protoheme IX farnesyltransferase, putative [Ricinus communis] gi|223535717|gb|EEF37381.1| protoheme IX farnesyltransferase, putative [Ricinus communis]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 268/337 (79%), Positives = 293/337 (86%), Gaps = 6/337 (1%)

Query: 77  MLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRP 136
           MLVVATSGTG+ LGSG+ +D AGLCWTC GTMMVAASANSLNQ+FEI+ND+KMKRT  RP
Sbjct: 1   MLVVATSGTGYVLGSGNAVDFAGLCWTCAGTMMVAASANSLNQVFEINNDSKMKRTRLRP 60

Query: 137 LPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNT 196
           LPSGR++V HAVTWASSVG+AGTA+LA KANML AGL ASNLILYAF+YTPLKQIHPVNT
Sbjct: 61  LPSGRLTVPHAVTWASSVGLAGTAILASKANMLAAGLGASNLILYAFIYTPLKQIHPVNT 120

Query: 197 WVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMI 256
           WVGA+VGAIPPLLGW AA G VSLN MILPAALYFWQIPHFMALAYLCRNDYAAGG++M 
Sbjct: 121 WVGAVVGAIPPLLGWAAASGQVSLNAMILPAALYFWQIPHFMALAYLCRNDYAAGGFKMF 180

Query: 257 SLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDR 316
           SLADASGQRTALVALRNCLYLVP+G+LAYDWGVTSGWFCLESSL+TLAISA+AFSF RDR
Sbjct: 181 SLADASGQRTALVALRNCLYLVPMGFLAYDWGVTSGWFCLESSLLTLAISASAFSFCRDR 240

Query: 317 TTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEKIVELSSSSETVPVESEDM 376
           T +KA++MFHASLLYLPVFMSGLLFHRL DNQ  L EE      EL SSS+ V   S + 
Sbjct: 241 TMKKAKRMFHASLLYLPVFMSGLLFHRLCDNQAGLAEE-----TELLSSSKAVVRGSGND 295

Query: 377 NRKKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPSYA 413
           +RK K   + S   Q R PVAYASVAPFPFLPAPSYA
Sbjct: 296 DRKTK-ERHRSASVQARPPVAYASVAPFPFLPAPSYA 331

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445029|ref|XP_003592792.1| Protoheme IX farnesyltransferase [Medicago truncatula] gi|355481840|gb|AES63043.1| Protoheme IX farnesyltransferase [Medicago truncatula]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 258/358 (72%), Positives = 303/358 (84%), Gaps = 5/358 (1%)

Query: 55  DPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASA 114
           D  SL RHYG CY +LSKARLS+LVVATSGTGF LGSG  +DL+ L +TC GTMMVAASA
Sbjct: 47  DLISLARHYGNCYSQLSKARLSLLVVATSGTGFVLGSGGAVDLSMLSYTCLGTMMVAASA 106

Query: 115 NSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLA 174
           ++LNQ+FEI NDA M+RT +RPLPSGRI+V HAV WASSVG+AGTALLA + NML AGLA
Sbjct: 107 STLNQVFEIKNDAIMRRTSQRPLPSGRITVPHAVGWASSVGLAGTALLATQTNMLAAGLA 166

Query: 175 ASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQI 234
           ASNL+LY+FVYTPLKQIHPVNTWVGA+VGAIPPLLGW AA G +SLN +ILPAALYFWQI
Sbjct: 167 ASNLVLYSFVYTPLKQIHPVNTWVGAVVGAIPPLLGWAAASGDISLNSLILPAALYFWQI 226

Query: 235 PHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWF 294
           PHFMALAY+CR DYAAGG++M SLAD SG++TA+VA+RN +YL+PLG+LAYDWGVTSGWF
Sbjct: 227 PHFMALAYMCREDYAAGGFKMYSLADPSGRKTAMVAMRNSIYLIPLGFLAYDWGVTSGWF 286

Query: 295 CLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEE 354
           CLES+ +TLAISAAAFSFYRDRT ++AR+MFHASLLYLPVFM+GLL HR TDNQ  L E 
Sbjct: 287 CLESTALTLAISAAAFSFYRDRTKERARRMFHASLLYLPVFMAGLLIHRRTDNQHFL-EV 345

Query: 355 DSEKIVELSSSSETVPVESEDMNRKKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPSY 412
           ++E  ++  SS ET  ++ ++ N+K K       G + R PVAYAS+APFPFLPAPSY
Sbjct: 346 NAEGFMKSPSSVETSEMDDKNGNQKIK----GRQGTRARPPVAYASIAPFPFLPAPSY 399

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064812|ref|XP_002301567.1| predicted protein [Populus trichocarpa] gi|222843293|gb|EEE80840.1| predicted protein [Populus trichocarpa]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 260/337 (77%), Positives = 290/337 (86%), Gaps = 6/337 (1%)

Query: 77  MLVVATSGTGFALGS-GSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRR 135
           MLVVATSGTG+ LGS GS +DLAGLCWTC GTMMVA+SANSLNQ+FE +NDAKMKRT  R
Sbjct: 1   MLVVATSGTGYVLGSAGSAVDLAGLCWTCAGTMMVASSANSLNQVFEKNNDAKMKRTRLR 60

Query: 136 PLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVN 195
           PLPS R+++ HA+TWASSVGVAGTA+LA KANML AGL  SNLILYAFVYTPLKQIHPVN
Sbjct: 61  PLPSRRMTIPHALTWASSVGVAGTAILACKANMLAAGLGVSNLILYAFVYTPLKQIHPVN 120

Query: 196 TWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRM 255
           TWVGA+VGAIPPLLGW AA G VSLN MILPAALYFWQIPHFMALAYLCR+DYAAGG++M
Sbjct: 121 TWVGAVVGAIPPLLGWAAASGEVSLNSMILPAALYFWQIPHFMALAYLCRSDYAAGGFKM 180

Query: 256 ISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRD 315
            SLADASG+RTA VALRNCLYLVPLG+LA DWGVTS WFCLESSLITLAISA AFSFY +
Sbjct: 181 FSLADASGRRTAAVALRNCLYLVPLGFLACDWGVTSSWFCLESSLITLAISALAFSFYLN 240

Query: 316 RTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEKIVELSSSSETVPVESED 375
           RTTQ AR+MFHASLLYLPVFMSGLLFHR++DNQQ L E+   +I EL    E V    E+
Sbjct: 241 RTTQNARRMFHASLLYLPVFMSGLLFHRVSDNQQCLSEDSLGRITEL----EPVVQGREN 296

Query: 376 MNRKKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPSY 412
           +    + + +S++G+Q RAPVAYAS APFPFLPAPSY
Sbjct: 297 LKHGNQET-HSAIGKQARAPVAYASAAPFPFLPAPSY 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824479|ref|XP_002880122.1| hypothetical protein ARALYDRAFT_483579 [Arabidopsis lyrata subsp. lyrata] gi|297325961|gb|EFH56381.1| hypothetical protein ARALYDRAFT_483579 [Arabidopsis lyrata subsp. lyrata]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 267/413 (64%), Positives = 311/413 (75%), Gaps = 39/413 (9%)

Query: 12  SYSQSNRSQHSSTELGFLVNRKCHGVRSSSS---ASASDSATGAAADPFSLI-------R 61
           S+SQ   S  S+ +LG        GVRS ++   AS + +AT    +  S +        
Sbjct: 37  SFSQPPVSSESTAKLGIT------GVRSDANRVFASGTVAATATTGEISSRVAAVAGLGH 90

Query: 62  HYGRCYWELSKARLSMLVVATSGTGFALGSG-STIDLAGLCWTCTGTMMVAASANSLNQL 120
           HY RCYWELSKAR SMLVVATSGTG+ LG+G + I   GLC+TC GTMM+AASANSLNQ+
Sbjct: 91  HYARCYWELSKARHSMLVVATSGTGYILGTGNAAISFPGLCYTCAGTMMIAASANSLNQI 150

Query: 121 FEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLIL 180
           FEISNDAKMKRTM RPLPSGRISV HAV WA+  G +G  LLA K NML AGLA++NL+L
Sbjct: 151 FEISNDAKMKRTMLRPLPSGRISVPHAVAWATIAGASGACLLASKTNMLAAGLASANLVL 210

Query: 181 YAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMAL 240
           YAFVYTPLKQ+HP+NTWVGA+VGAIPPLLGW AA G +S N MILPAALYFWQIPHFMAL
Sbjct: 211 YAFVYTPLKQLHPINTWVGAVVGAIPPLLGWAAASGQISFNSMILPAALYFWQIPHFMAL 270

Query: 241 AYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSL 300
           A+LCRNDYAAGGY+M+SL D SG+R A VALRNC Y+VPLG++AYDWG+TS WFC+ES+L
Sbjct: 271 AHLCRNDYAAGGYKMLSLFDPSGKRIAAVALRNCFYMVPLGFIAYDWGLTSSWFCVESTL 330

Query: 301 ITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLT-DNQQSLPEEDSEKI 359
           +TLAI+A AFSFYRDRT QKARKMFHASLL+LPVFMSGLL HR++ DNQQ L EE     
Sbjct: 331 LTLAIAATAFSFYRDRTMQKARKMFHASLLFLPVFMSGLLLHRVSNDNQQQLIEEAGL-- 388

Query: 360 VELSSSSETVPVESEDMNRKKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPSY 412
                S+E  P+      R+KK        R  + PVAYAS APFPFLPAPS+
Sbjct: 389 -----SNEVKPL------RRKK--------RVAQPPVAYASAAPFPFLPAPSF 422

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406556|ref|NP_566019.1| protoheme IX farnesyltransferase [Arabidopsis thaliana] gi|75099253|sp|O64886.4|COX10_ARATH RecName: Full=Protoheme IX farnesyltransferase, mitochondrial; AltName: Full=Cytochrome c oxidase assembly protein COX10; AltName: Full=Heme O synthase; Flags: Precursor gi|15028299|gb|AAK76626.1| putative heme A:farnesyltransferase [Arabidopsis thaliana] gi|20197028|gb|AAC27454.3| putative heme A:farnesyltransferase [Arabidopsis thaliana] gi|20197183|gb|AAM14960.1| putative heme A:farnesyltransferase [Arabidopsis thaliana] gi|21280973|gb|AAM45064.1| putative heme A [Arabidopsis thaliana] gi|330255338|gb|AEC10432.1| protoheme IX farnesyltransferase [Arabidopsis thaliana]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/356 (69%), Positives = 289/356 (81%), Gaps = 19/356 (5%)

Query: 59  LIRHYGRCYWELSKARLSMLVVATSGTGFALGSG-STIDLAGLCWTCTGTMMVAASANSL 117
           L  HY RCYWELSKA+LSMLVVATSGTG+ LG+G + I   GLC+TC GTMM+AASANSL
Sbjct: 90  LGHHYARCYWELSKAKLSMLVVATSGTGYILGTGNAAISFPGLCYTCAGTMMIAASANSL 149

Query: 118 NQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASN 177
           NQ+FEISND+KMKRTM RPLPSGRISV HAV WA+  G +G  LLA K NML AGLA++N
Sbjct: 150 NQIFEISNDSKMKRTMLRPLPSGRISVPHAVAWATIAGASGACLLASKTNMLAAGLASAN 209

Query: 178 LILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHF 237
           L+LYAFVYTPLKQ+HP+NTWVGA+VGAIPPLLGW AA G +S N MILPAALYFWQIPHF
Sbjct: 210 LVLYAFVYTPLKQLHPINTWVGAVVGAIPPLLGWAAASGQISYNSMILPAALYFWQIPHF 269

Query: 238 MALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLE 297
           MALA+LCRNDYAAGGY+M+SL D SG+R A VALRNC Y++PLG++AYDWG+TS WFCLE
Sbjct: 270 MALAHLCRNDYAAGGYKMLSLFDPSGKRIAAVALRNCFYMIPLGFIAYDWGLTSSWFCLE 329

Query: 298 SSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLT-DNQQSLPEEDS 356
           S+L+TLAI+A AFSFYRDRT  KARKMFHASLL+LPVFMSGLL HR++ DNQQ L EE  
Sbjct: 330 STLLTLAIAATAFSFYRDRTMHKARKMFHASLLFLPVFMSGLLLHRVSNDNQQQLVEE-- 387

Query: 357 EKIVELSSSSETVPVESEDMNRKKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPSY 412
                 +  + +V  E +   RKK+++         + PVAYAS APFPFLPAPS+
Sbjct: 388 ------AGLTNSVSGEVKTQRRKKRVA---------QPPVAYASAAPFPFLPAPSF 428

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445027|ref|XP_003592791.1| Protoheme IX farnesyltransferase [Medicago truncatula] gi|355481839|gb|AES63042.1| Protoheme IX farnesyltransferase [Medicago truncatula]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 258/408 (63%), Positives = 303/408 (74%), Gaps = 55/408 (13%)

Query: 55  DPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASA 114
           D  SL RHYG CY +LSKARLS+LVVATSGTGF LGSG  +DL+ L +TC GTMMVAASA
Sbjct: 47  DLISLARHYGNCYSQLSKARLSLLVVATSGTGFVLGSGGAVDLSMLSYTCLGTMMVAASA 106

Query: 115 NSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKA-------- 166
           ++LNQ+FEI NDA M+RT +RPLPSGRI+V HAV WASSVG+AGTALLA +         
Sbjct: 107 STLNQVFEIKNDAIMRRTSQRPLPSGRITVPHAVGWASSVGLAGTALLATQVVNLLTSLI 166

Query: 167 -NMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLG--------------- 210
            NML AGLAASNL+LY+FVYTPLKQIHPVNTWVGA+VGAIPPLLG               
Sbjct: 167 TNMLAAGLAASNLVLYSFVYTPLKQIHPVNTWVGAVVGAIPPLLGRDACSQISCLYAESG 226

Query: 211 --------------------------WTAAVGHVSLNGMILPAALYFWQIPHFMALAYLC 244
                                     W AA G +SLN +ILPAALYFWQIPHFMALAY+C
Sbjct: 227 RIYNSTLNILKISIPSLILLDLAPLKWAAASGDISLNSLILPAALYFWQIPHFMALAYMC 286

Query: 245 RNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLA 304
           R DYAAGG++M SLAD SG++TA+VA+RN +YL+PLG+LAYDWGVTSGWFCLES+ +TLA
Sbjct: 287 REDYAAGGFKMYSLADPSGRKTAMVAMRNSIYLIPLGFLAYDWGVTSGWFCLESTALTLA 346

Query: 305 ISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEKIVELSS 364
           ISAAAFSFYRDRT ++AR+MFHASLLYLPVFM+GLL HR TDNQ  L E ++E  ++  S
Sbjct: 347 ISAAAFSFYRDRTKERARRMFHASLLYLPVFMAGLLIHRRTDNQHFL-EVNAEGFMKSPS 405

Query: 365 SSETVPVESEDMNRKKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPSY 412
           S ET  ++ ++ N+K K       G + R PVAYAS+APFPFLPAPSY
Sbjct: 406 SVETSEMDDKNGNQKIK----GRQGTRARPPVAYASIAPFPFLPAPSY 449

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326489061|dbj|BAK01514.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/356 (66%), Positives = 277/356 (77%), Gaps = 3/356 (0%)

Query: 58  SLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSL 117
            ++RHYG CYWELSKARLS LVVATSG G+ LGSGS +D+A LC+TCTGTMMVAASAN+L
Sbjct: 72  DVLRHYGACYWELSKARLSALVVATSGAGYVLGSGSIVDIAELCYTCTGTMMVAASANTL 131

Query: 118 NQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASN 177
           NQ+FEI NDAKMKRTMRRPLPSGRIS  HA  WA++VG AGTALLA KAN L AGLAASN
Sbjct: 132 NQVFEIKNDAKMKRTMRRPLPSGRISPVHATMWATTVGAAGTALLACKANDLAAGLAASN 191

Query: 178 LILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHF 237
           LILYAFVYTPLKQIHPVNTWVGA+VGAIPPLLGW AA   VSLN MILPAALYFWQ+PHF
Sbjct: 192 LILYAFVYTPLKQIHPVNTWVGAVVGAIPPLLGWAAAASEVSLNSMILPAALYFWQLPHF 251

Query: 238 MALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLE 297
           MALAYLCR+DY AGGYRM+S AD +G+RTA V+LRNCLY++PLG  AY+WG+TS WF  E
Sbjct: 252 MALAYLCRDDYLAGGYRMLSFADPTGKRTAWVSLRNCLYMLPLGLFAYNWGLTSEWFSFE 311

Query: 298 SSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPE-EDS 356
           +SL+T  ++  A SF    + + AR+MFH SLLYLP  M+GL+ HRL + Q+       +
Sbjct: 312 ASLLTTGLAIGALSFVLAPSHKSARRMFHGSLLYLPALMAGLILHRLPNEQKEHNHIHQT 371

Query: 357 EKIVELSSSSETVPVESEDMNRKKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPSY 412
            +I  +   +E    + E+  R+K+     S   Q R PVAYASVAPFPFLP P Y
Sbjct: 372 SEIAGVLRGTEL--WDEEEGGRQKREDAKHSRRAQSRPPVAYASVAPFPFLPVPVY 425

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
TAIR|locus:2042316	431	COX10 "cytochrome c oxidase 10	0.806	0.774	0.665	4.9e-124
MGI|MGI:1917633	443	Cox10 "cytochrome c oxidase as	0.676	0.632	0.411	2e-49
UNIPROTKB|E2RHC0	440	COX10 "Uncharacterized protein	0.637	0.6	0.423	6.7e-49
RGD|1594623	442	Cox10 "cytochrome c oxidase as	0.676	0.633	0.408	1.1e-48
UNIPROTKB|A5D7D6	443	COX10 "Uncharacterized protein	0.637	0.595	0.419	1.4e-48
UNIPROTKB|Q5ZJY8	448	COX10 "Protoheme IX farnesyltr	0.637	0.589	0.415	9.8e-48
ZFIN|ZDB-GENE-041111-239	470	cox10 "COX10 homolog, cytochro	0.644	0.568	0.411	2e-47
FB|FBgn0032222	391	CG5037 [Drosophila melanogaste	0.666	0.705	0.399	3.3e-47
UNIPROTKB|Q12887	443	COX10 "Protoheme IX farnesyltr	0.637	0.595	0.411	8.8e-47
POMBASE|SPBC365.02c	387	cox10 "protoheme IX farnesyltr	0.698	0.746	0.364	3.4e-45

TAIR|locus:2042316 COX10 "cytochrome c oxidase 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
 Identities = 235/353 (66%), Positives = 267/353 (75%)

Query:    62 HYGRCYWELSKARLSMLVVATSGTGFALGSGST-IDLAGLCWTCTGTMMVAASANSLNQL 120
             HY RCYWELSKA+LSMLVVATSGTG+ LG+G+  I   GLC+TC GTMM+AASANSLNQ+
Sbjct:    93 HYARCYWELSKAKLSMLVVATSGTGYILGTGNAAISFPGLCYTCAGTMMIAASANSLNQI 152

Query:   121 FEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLIL 180
             FEISND+KMKRTM RPLPSGRISV HAV WA+  G +G  LLA K NML AGLA++NL+L
Sbjct:   153 FEISNDSKMKRTMLRPLPSGRISVPHAVAWATIAGASGACLLASKTNMLAAGLASANLVL 212

Query:   181 YAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMAL 240
             YAFVYTPLKQ+HP+NTWVGA+VGAIPPLLGW AA G +S N MILPAALYFWQIPHFMAL
Sbjct:   213 YAFVYTPLKQLHPINTWVGAVVGAIPPLLGWAAASGQISYNSMILPAALYFWQIPHFMAL 272

Query:   241 AYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLEXXX 300
             A+LCRNDYAAGGY+M+SL D SG+R A VALRNC Y++PLG++AYDWG+TS WFCLE   
Sbjct:   273 AHLCRNDYAAGGYKMLSLFDPSGKRIAAVALRNCFYMIPLGFIAYDWGLTSSWFCLESTL 332

Query:   301 XXXXXXXXXXXXYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLT-DNQQSLPEEDSEKI 359
                         YRDRT  KARKMFHASLL+LPVFMSGLL HR++ DNQQ L EE     
Sbjct:   333 LTLAIAATAFSFYRDRTMHKARKMFHASLLFLPVFMSGLLLHRVSNDNQQQLVEE----- 387

Query:   360 XXXXXXXXXXXXXXXDMNRKKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPSY 412
                               R+KK        R  + PVAYAS APFPFLPAPS+
Sbjct:   388 ----AGLTNSVSGEVKTQRRKK--------RVAQPPVAYASAAPFPFLPAPSF 428

GO:0004659 "prenyltransferase activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=IEA

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0048034 "heme O biosynthetic process" evidence=IEA

MGI|MGI:1917633 Cox10 "cytochrome c oxidase assembly protein 10" [Mus musculus (taxid:10090)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 119/289 (41%), Positives = 163/289 (56%)

Query:    70 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKM 129
             LSK +L+ LVV+T+  GFAL  G   D +    T  GT + + +ANS+NQ FE+  D+ M
Sbjct:   159 LSKIKLTALVVSTTSAGFALAPGP-FDWSCFLLTSLGTGLASCAANSINQFFEVPFDSNM 217

Query:   130 KRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLK 189
              RT  RPL  G+IS   AV++A+   V G ALL W  N LT  L   N+ LY   YTPLK
Sbjct:   218 NRTKNRPLVRGQISPLLAVSFATCCAVPGVALLTWGVNPLTGALGVFNIFLYTCCYTPLK 277

Query:   190 QIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYA 249
             ++   NTWVGA+VGAIPP++GWTAA G +    ++L   LY WQ PHF AL++  R DY+
Sbjct:   278 RVSITNTWVGAVVGAIPPVMGWTAATGSLDAGALLLGGILYSWQFPHFNALSWGLREDYS 337

Query:   250 AGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLEXXXXXXXXXXXX 309
              GGY M+S+   +  R   VALR+CL L+ L   A    +T+  F +             
Sbjct:   338 RGGYCMMSVTHPALCRR--VALRHCLALIALSTAAPVLDITTWVFPVISLPINLYISYLG 395

Query:   310 XXXYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEK 358
                Y D   + +RK+F  SL +LP+    LL   LT  Q+  P ++ +K
Sbjct:   396 FRFYVDADRRSSRKLFFCSLWHLPL----LLLLMLTCKQR--PGQEGDK 438

GO:0000266 "mitochondrial fission" evidence=IMP

GO:0004311 "farnesyltranstransferase activity" evidence=ISO

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006783 "heme biosynthetic process" evidence=IEA

GO:0006784 "heme a biosynthetic process" evidence=ISO;IMP;IDA

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

GO:0008535 "respiratory chain complex IV assembly" evidence=ISO

GO:0009060 "aerobic respiration" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0017004 "cytochrome complex assembly" evidence=IDA

GO:0018343 "protein farnesylation" evidence=ISO

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0045333 "cellular respiration" evidence=ISO

GO:0048034 "heme O biosynthetic process" evidence=IEA

UNIPROTKB|E2RHC0 COX10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 113/267 (42%), Positives = 151/267 (56%)

Query:    70 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKM 129
             LSK +L+ LVV+T+  GFAL  G   D      T  GT + + +ANS+NQ FE+  D+ M
Sbjct:   156 LSKIKLTALVVSTTSAGFALAPGP-FDWPCFLLTSLGTGLASCAANSINQFFEVPFDSNM 214

Query:   130 KRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLK 189
              RT  RPL  G+IS   AV++A+   V G ALL W  N LT  L   N+ LY   YTPLK
Sbjct:   215 NRTKNRPLVRGQISPLLAVSFATCCAVPGVALLTWGVNPLTGALGVFNIFLYTCCYTPLK 274

Query:   190 QIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYA 249
             +I   NTWVGA+VGA+PP++GWTAA G +     +L   LY WQ PHF AL++  R DY+
Sbjct:   275 RISIANTWVGAVVGAVPPVMGWTAATGSLDAGAFLLGGILYSWQFPHFNALSWGLREDYS 334

Query:   250 AGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLEXXXXXXXXXXXX 309
              GGY M+S+   +  R   VALR+CL L+ L   A    VT+  F +             
Sbjct:   335 RGGYCMMSVTHPALCRR--VALRHCLALIGLSTAAPVLDVTTWTFPVISLPINLYITYLG 392

Query:   310 XXXYRDRTTQKARKMFHASLLYLPVFM 336
                Y D   + +RK+F  SL +LP+ +
Sbjct:   393 FRFYTDADRKSSRKLFFCSLWHLPLLL 419

GO:0017004 "cytochrome complex assembly" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

GO:0008535 "respiratory chain complex IV assembly" evidence=IEA

GO:0006784 "heme a biosynthetic process" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0000266 "mitochondrial fission" evidence=IEA

GO:0048034 "heme O biosynthetic process" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

RGD|1594623 Cox10 "cytochrome c oxidase assembly homolog 10 (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 118/289 (40%), Positives = 162/289 (56%)

Query:    70 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKM 129
             LSK +L+ LVV+T+  GFAL      D +    T  GT + + +ANS+NQ FE+  D+ M
Sbjct:   158 LSKIKLTALVVSTTSAGFALAP-CPFDWSCFLLTSLGTGLASCAANSINQFFEVPFDSNM 216

Query:   130 KRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLK 189
              RT  RPL  G+IS   AV++A+   V G ALL W  N LT  L   N+ LY   YTPLK
Sbjct:   217 SRTKNRPLVRGQISPLLAVSFATCCAVPGVALLTWGVNPLTGALGVFNIFLYTCCYTPLK 276

Query:   190 QIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYA 249
             ++   NTWVGA+VGAIPP++GWTAA G +    ++L   LY WQ PHF AL++  R DY+
Sbjct:   277 RVSIANTWVGAVVGAIPPVMGWTAATGSLDAGALLLGGILYSWQFPHFNALSWGLREDYS 336

Query:   250 AGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLEXXXXXXXXXXXX 309
              GGY M+S+   +  R   VALR+CL L+ L   A    +T+  F +             
Sbjct:   337 RGGYCMMSVTHPALCRR--VALRHCLALIALSTTAPVLDITTWVFPVISLPINLYISYLG 394

Query:   310 XXXYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEK 358
                Y D   + +RK+F  SL +LP+    LL   LT  Q+  P ++ +K
Sbjct:   395 FRFYVDADRKSSRKLFFCSLWHLPL----LLLLMLTCKQR--PGQEGDK 437

GO:0000266 "mitochondrial fission" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0006784 "heme a biosynthetic process" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0008535 "respiratory chain complex IV assembly" evidence=ISO

GO:0009060 "aerobic respiration" evidence=ISO

GO:0017004 "cytochrome complex assembly" evidence=ISO

GO:0045333 "cellular respiration" evidence=ISO

GO:0004129 "cytochrome-c oxidase activity" evidence=ISO

UNIPROTKB|A5D7D6 COX10 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 112/267 (41%), Positives = 153/267 (57%)

Query:    70 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKM 129
             LSK +L+ LVV+T+  GFAL   +  D +    T  GT + + +ANS+NQ FE+  D+ M
Sbjct:   160 LSKIKLTALVVSTTSAGFALAP-APFDWSCFLLTFVGTGLASCAANSINQFFEVPFDSNM 218

Query:   130 KRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLK 189
              RT  RPL  G+IS   AV++A+   V G ALL W  N LT  L   N+ LY   YTPLK
Sbjct:   219 NRTKNRPLVRGQISPLLAVSFATCCAVPGVALLTWGVNPLTGALGLFNIFLYTCCYTPLK 278

Query:   190 QIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYA 249
             ++   NTWVGA+VGAIPP++GWTAA G +     +L   LY WQ PHF AL++  R DY+
Sbjct:   279 RVSIANTWVGAVVGAIPPVMGWTAATGSLDAGACLLGGILYSWQFPHFNALSWGLREDYS 338

Query:   250 AGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLEXXXXXXXXXXXX 309
              GGY M+S+   +  R   VALR+CL L+ +   A    VT+  F +             
Sbjct:   339 RGGYCMMSVTHPALCRR--VALRHCLALLAMCVAAPALDVTTWTFPVIALPINLYISYLG 396

Query:   310 XXXYRDRTTQKARKMFHASLLYLPVFM 336
                YRD   + +RK+F  SL +LP+ +
Sbjct:   397 FRFYRDADRKSSRKLFFCSLWHLPLLL 423

GO:0017004 "cytochrome complex assembly" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

GO:0008535 "respiratory chain complex IV assembly" evidence=IEA

GO:0006784 "heme a biosynthetic process" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0000266 "mitochondrial fission" evidence=IEA

GO:0048034 "heme O biosynthetic process" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

UNIPROTKB|Q5ZJY8 COX10 "Protoheme IX farnesyltransferase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 111/267 (41%), Positives = 152/267 (56%)

Query:    70 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKM 129
             LSK +L+ LVV+T+  GFA+      DL        GT + + +ANS+NQ FE+  D+ M
Sbjct:   152 LSKIKLTALVVSTASAGFAMAP-VPFDLPCFLLASLGTGLASCAANSINQFFEVPFDSNM 210

Query:   130 KRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLK 189
              RT  RPL  G+IS   AV +A+S GV G ALL    N LT  L A N+ LY   YTP+K
Sbjct:   211 NRTKNRPLVRGQISPLLAVCFAASCGVPGIALLTMGVNPLTGALGAFNIFLYTCCYTPMK 270

Query:   190 QIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYA 249
             ++   NTWVGA+VGAIPP++GWTAA G +    ++L   LY WQ PHF AL++  R DY+
Sbjct:   271 RMSIANTWVGAVVGAIPPVMGWTAATGSLDAGALLLGGILYSWQFPHFNALSWGLREDYS 330

Query:   250 AGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLEXXXXXXXXXXXX 309
              GGY M+S+      R   VALR+C+ L+ L  +A    +T+  F +             
Sbjct:   331 RGGYCMMSVTHPELCRR--VALRHCVALIGLCTVAPILDITTWTFPIISLPLNLYISYLG 388

Query:   310 XXXYRDRTTQKARKMFHASLLYLPVFM 336
                YRD     +RK+F  SL +LP+ +
Sbjct:   389 FRFYRDADRSSSRKLFFCSLWHLPLLL 415

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0048034 "heme O biosynthetic process" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0000266 "mitochondrial fission" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0006784 "heme a biosynthetic process" evidence=IEA

GO:0008535 "respiratory chain complex IV assembly" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

GO:0017004 "cytochrome complex assembly" evidence=IEA

ZFIN|ZDB-GENE-041111-239 cox10 "COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)" [Danio rerio (taxid:7955)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 111/270 (41%), Positives = 152/270 (56%)

Query:    67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
             Y  LSK +L+ LVV T+  GFA+      D  G      GT + + +ANS+NQ FE+  D
Sbjct:   177 YARLSKLKLTALVVTTAAAGFAMAP-VPFDPVGFLMASLGTGLSSCTANSINQYFEVPFD 235

Query:   127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
             + M RT  RPL  G+IS  HAV++A + G+ G  LL    N LT  L + N+ LY   YT
Sbjct:   236 SNMNRTKNRPLVRGQISPLHAVSFALACGIPGVTLLTLGVNPLTGFLGSLNIFLYTCCYT 295

Query:   187 PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRN 246
             PLK++   NTWVGA+VGAIPP++GWTAA G +    ++L A L+ WQ PHF AL++  R 
Sbjct:   296 PLKRLSIANTWVGAVVGAIPPVMGWTAATGSLDPGALLLGAFLFSWQFPHFNALSWNLRE 355

Query:   247 DYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLEXXXXXXXXX 306
             DY+ GGYRM+S+      +   VALR+ + L+ L  L     VT+  F L          
Sbjct:   356 DYSRGGYRMMSVTHPGLCKR--VALRHSVGLIFLSALGPVLDVTTWTFPLVSLPINLYIS 413

Query:   307 XXXXXXYRDRTTQKARKMFHASLLYLPVFM 336
                   YR    Q +RK+F  SL +LP+ +
Sbjct:   414 YLAFRFYRHGDRQNSRKLFFCSLWHLPMLL 443

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0006783 "heme biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0048034 "heme O biosynthetic process" evidence=IEA

FB|FBgn0032222 CG5037 [Drosophila melanogaster (taxid:7227)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 113/283 (39%), Positives = 162/283 (57%)

Query:    67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
             Y +LSK RL+ LVV T+  G+A+   +  D         GT +V+A+AN++NQ  E+  D
Sbjct:    76 YKKLSKFRLTSLVVITTMGGYAMAPAA-FDPTTFAMCTLGTGLVSAAANAINQYHEVPFD 134

Query:   127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
             ++M RT  R L +G+++  HAVT+A+    AG ++L +  N LTA L A NL LY  +YT
Sbjct:   135 SQMSRTKNRVLVTGQMTPLHAVTFAAVSATAGLSMLYFGVNGLTAALGAGNLFLYTTIYT 194

Query:   187 PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRN 246
             P+K+I  VNTWVG+IVGAIPPL+GW      +    MIL   LY WQ PHF AL++  R 
Sbjct:   195 PMKRISIVNTWVGSIVGAIPPLMGWAGCAATLDAGAMILAGVLYAWQFPHFNALSWNLRP 254

Query:   247 DYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLEXXXXXXXXX 306
             DY+  GYRM+++ +    R    ALR  + +V L  +A    VT+ WF LE         
Sbjct:   255 DYSRAGYRMMAVTNPGLCRRT--ALRYSVAIVGLSAMAPVLDVTNYWFALETLPLNAYFA 312

Query:   307 XXXXXXYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQ 349
                   +    +  +RK+F  SL++LP  M  LLF  LT+ ++
Sbjct:   313 YLAYKFHEKSDSGSSRKLFRFSLIHLPALM--LLF--LTNKKE 351

GO:0008535 "respiratory chain complex IV assembly" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0048034 "heme O biosynthetic process" evidence=IEA

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q12887 COX10 "Protoheme IX farnesyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 110/267 (41%), Positives = 149/267 (55%)

Query:    70 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKM 129
             LSK +L+ LVV+T+  GFAL  G   D      T  GT + + +ANS+NQ FE+  D+ M
Sbjct:   160 LSKIKLTALVVSTTAAGFALAPGP-FDWPCFLLTSVGTGLASCAANSINQFFEVPFDSNM 218

Query:   130 KRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLK 189
              RT  RPL  G+IS   AV++A+   V G A+L    N LT  L   N+ LY   YTPLK
Sbjct:   219 NRTKNRPLVRGQISPLLAVSFATCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPLK 278

Query:   190 QIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYA 249
             +I   NTWVGA+VGAIPP++GWTAA G +     +L   LY WQ PHF AL++  R DY+
Sbjct:   279 RISIANTWVGAVVGAIPPVMGWTAATGSLDAGAFLLGGILYSWQFPHFNALSWGLREDYS 338

Query:   250 AGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLEXXXXXXXXXXXX 309
              GGY M+S+      R   VALR+CL L+ L   A    +T+  F +             
Sbjct:   339 RGGYCMMSVTHPGLCRR--VALRHCLALLVLSAAAPVLDITTWTFPIMALPINAYISYLG 396

Query:   310 XXXYRDRTTQKARKMFHASLLYLPVFM 336
                Y D   + +R++F  SL +LP+ +
Sbjct:   397 FRFYVDADRRSSRRLFFCSLWHLPLLL 423

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

GO:0048034 "heme O biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000266 "mitochondrial fission" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

GO:0017004 "cytochrome complex assembly" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0004311 "farnesyltranstransferase activity" evidence=TAS

GO:0005739 "mitochondrion" evidence=IC

GO:0045333 "cellular respiration" evidence=IGI

GO:0004129 "cytochrome-c oxidase activity" evidence=IMP

GO:0006123 "mitochondrial electron transport, cytochrome c to oxygen" evidence=IC

GO:0006784 "heme a biosynthetic process" evidence=IMP

GO:0008535 "respiratory chain complex IV assembly" evidence=IMP

POMBASE|SPBC365.02c cox10 "protoheme IX farnesyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 109/299 (36%), Positives = 161/299 (53%)

Query:    67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
             + EL K RL++LVV ++ + +AL     +    L W   GT + + SAN+ NQ  E   D
Sbjct:    87 FLELGKPRLTVLVVLSTMSSYALAPYPGLSFNTLAWLTMGTALCSISANAFNQSMEPMLD 146

Query:   127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
              +M RT  RP+P G I   +A  +A+  G+AGT++ ++  N     L   N++LY  +YT
Sbjct:   147 CQMARTRSRPIPRGAIRPEYAWLFATLTGIAGTSM-SFLVNPTVGWLGLGNIVLYMGIYT 205

Query:   187 PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLN---GMILPAALYFWQIPHFMALAYL 243
             PLK+I  VNTWVG++VGAIPPL+GW A  G   L+   G+I  A L+ WQ PHF A + +
Sbjct:   206 PLKRISIVNTWVGSLVGAIPPLMGWAACSGGDLLSHPGGLITAAMLFAWQFPHFNAFSTM 265

Query:   244 CRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLEXXXXXX 303
              ++DY   GY+M++  + +    A V+LR  L  +PL Y     G+   W+ +       
Sbjct:   266 VKDDYKKCGYQMMAWKNPA--LNARVSLRYALAFLPLSYAYISTGLVGPWYAVPATGTNM 323

Query:   304 XXXXXXXXXYRDRTTQKARKMFHASLLYLPV-FMSGLLFHRL---TDNQQSLPEEDSEK 358
                      YR+R  Q AR +F ASLL+LP+ F   L  H +    D+    P   SE+
Sbjct:   324 FLIARAWKFYRNRNYQNARSLFFASLLHLPLLFTLTLACHMIKVWNDSDSKNPVLGSEE 382

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=NAS

GO:0006784 "heme a biosynthetic process" evidence=ISO

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=ISS

GO:0008535 "respiratory chain complex IV assembly" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0048034 "heme O biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O64886	COX10_ARATH	2, ., 5, ., 1, ., -	0.6966	0.8140	0.7819	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	414
PLN02776	341	PLN02776, PLN02776, prenyltransferase	0.0
TIGR01473	280	TIGR01473, cyoE_ctaB, protoheme IX farnesyltransfe	1e-96
COG0109	304	COG0109, CyoE, Polyprenyltransferase (cytochrome o	2e-70
PRK04375	296	PRK04375, PRK04375, protoheme IX farnesyltransfera	3e-61
PRK13362	306	PRK13362, PRK13362, protoheme IX farnesyltransfera	2e-41
PRK12869	279	PRK12869, ubiA, protoheme IX farnesyltransferase;	2e-30
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	1e-21
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	1e-14
PRK12888	284	PRK12888, ubiA, prenyltransferase; Reviewed	1e-09
TIGR01474	281	TIGR01474, ubiA_proteo, 4-hydroxybenzoate polypren	1e-07
PRK12878	314	PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransf	2e-07
TIGR01475	282	TIGR01475, ubiA_other, putative 4-hydroxybenzoate	6e-07
PRK12870	290	PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransf	2e-06
PRK12848	282	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransf	7e-06
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	3e-05
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	4e-05
PRK12847	285	PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransf	1e-04
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	3e-04
PRK12886	291	PRK12886, ubiA, prenyltransferase; Reviewed	6e-04
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	6e-04
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	0.002

>gnl|CDD|215415 PLN02776, PLN02776, prenyltransferase

 Score =  543 bits (1402), Expect = 0.0
 Identities = 232/344 (67%), Positives = 270/344 (78%), Gaps = 5/344 (1%)

Query: 70  LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKM 129
           LSKARLS LVVATSG GF LGSG  IDL GL WTC GTM+ AASAN+LNQ+FE+ ND+KM
Sbjct: 1   LSKARLSALVVATSGAGFVLGSGEAIDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKM 60

Query: 130 KRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLK 189
           KRTMRRPLPSGRISV HAV WA  VG AG ALLA+K NMLTAGL A N++LYAFVYTPLK
Sbjct: 61  KRTMRRPLPSGRISVPHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTPLK 120

Query: 190 QIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYA 249
           QIHP NTWVGA+VGAIPPL+GW AA G +    M+L AALYFWQ+PHFMALAY+CR+DYA
Sbjct: 121 QIHPANTWVGAVVGAIPPLMGWAAASGQLDAGAMVLAAALYFWQMPHFMALAYMCRDDYA 180

Query: 250 AGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAA 309
           AGGYRM+SLADA+G+RTALVALRNCLYL PLG+LAYDWGVTS  F LE++L+T  ++A+A
Sbjct: 181 AGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSSPFALEAALLTAYLAASA 240

Query: 310 FSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEKIVELSSSSETV 369
            SFYR+ T   ARKMFH SLLYLP FM+ LL HR+ ++ Q     D  +  EL+ S +  
Sbjct: 241 ASFYREPTNANARKMFHGSLLYLPAFMALLLLHRVPNDNQ----VDLRQESELTESLDGR 296

Query: 370 PVESEDMNRKKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPSYA 413
               E+ + ++  S   + GR  R PVAYAS APFPFLPAPSYA
Sbjct: 297 AKGREETSLEQV-SKRRAPGRVARPPVAYASAAPFPFLPAPSYA 339

Length = 341

>gnl|CDD|233428 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase

 Score =  289 bits (743), Expect = 1e-96
 Identities = 106/281 (37%), Positives = 148/281 (52%), Gaps = 4/281 (1%)

Query: 65  RCYWELSKARLSMLVVATSGTGFALGSGST-IDLAGLCWTCTGTMMVAASANSLNQLFEI 123
           + Y +L+K R+  L++ T+  G  L  G   ++   L  T  GT + AASAN+ N   + 
Sbjct: 1   KDYLQLTKPRIISLLLITAFAGMWLAPGGALVNPPLLLLTLLGTTLAAASANAFNMYIDR 60

Query: 124 SNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAF 183
             D KMKRT  RPL +GRIS R A+ +   +GV G A+LA   N L A L    +  Y  
Sbjct: 61  DIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVI 120

Query: 184 VYT-PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAY 242
           VYT  LK+  P NT +G   GA+PPL+GW A  G +SL   +L A ++ WQ PHF ALA 
Sbjct: 121 VYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSISLGAWLLFAIIFLWQPPHFWALAL 180

Query: 243 LCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLIT 302
             ++DY A G  M+ +          +AL     L+P+  L    G T   + + ++L+ 
Sbjct: 181 KYKDDYRAAGIPMLPVVKGERITKRQIALY-TAALLPVSLLLAFLGGTGWLYLIVATLLG 239

Query: 303 LAISAAAFSFYRDRTTQ-KARKMFHASLLYLPVFMSGLLFH 342
                 AF FYRD T + KARK+F  SL+YL +    LL  
Sbjct: 240 ALFLYLAFKFYRDPTDRKKARKLFKFSLIYLALLFVALLID 280

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 280

>gnl|CDD|223187 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

 Score =  224 bits (572), Expect = 2e-70
 Identities = 95/279 (34%), Positives = 142/279 (50%), Gaps = 2/279 (0%)

Query: 67  YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
           Y +L+K R+  L++ T+  G  L    +I+   L  T  G  + A  A + N   +   D
Sbjct: 21  YLQLTKPRVISLLLITAFAGMLLAPRGSINPLLLLLTLLGGALGAGGAGAFNMYIDRDID 80

Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
           A M+RT +RPL +G IS R A+ +   +GVAG +LL +  N+L A L    +  Y  VYT
Sbjct: 81  ALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYT 140

Query: 187 P-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCR 245
             LK+  P N  +G   GA+PPL+GW A  G +SL  ++L A ++ W  PHF ALA   +
Sbjct: 141 LWLKRRTPQNIVIGGFAGAMPPLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYK 200

Query: 246 NDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAI 305
           +DY A G  M+ +     +RT    L   L L P+  L    G     + + ++L+    
Sbjct: 201 DDYKAAGIPMLPVV-KGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVATLLGAWF 259

Query: 306 SAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRL 344
            A A+  YR    + ARK+F  S++YL +    LL   L
Sbjct: 260 LALAWKLYRKDDRKWARKLFKYSIIYLALLFVALLIDSL 298

Length = 304

>gnl|CDD|235293 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional

 Score =  199 bits (509), Expect = 3e-61
 Identities = 99/292 (33%), Positives = 134/292 (45%), Gaps = 28/292 (9%)

Query: 67  YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
           Y  L+K R+  L + T+  G  L       L  L  T  G  +VA +A +LN   +   D
Sbjct: 13  YLALTKPRVISLNLFTALGGMLLAPPGVPPLLLLLLTLLGIALVAGAAGALNNYIDRDID 72

Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
           AKM+RT  RPL +GRIS R A+ +   +GV G  LL    N L A L  + +  Y  VYT
Sbjct: 73  AKMERTKNRPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYT 132

Query: 187 P-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCR 245
             LK+  P N  +G   GA+PPL+GW A  G +S   +IL   ++ W  PHF ALA   +
Sbjct: 133 LWLKRRTPQNIVIGGAAGAMPPLIGWAAVTGSLSWEALILFLIIFLWTPPHFWALAIFRK 192

Query: 246 NDYAAGGYRMISLADASGQRT---------ALVALRNCLYLVPLGYLAYDWGVT----SG 292
           +DYAA G  M+ +     + T          LVA+   L  V LG     + V       
Sbjct: 193 DDYAAAGIPMLPVV-KGIRVTKRQILLYTVLLVAV--SLLPVLLGMAGLLYLVVALLLGA 249

Query: 293 WFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRL 344
           WF              A+  YR    + ARK+F  S+ YL +    LL   L
Sbjct: 250 WFLYY-----------AWRLYRKDDRKWARKLFRYSINYLTLLFVALLVDHL 290

Length = 296

>gnl|CDD|184001 PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional

 Score =  148 bits (375), Expect = 2e-41
 Identities = 86/270 (31%), Positives = 127/270 (47%), Gaps = 6/270 (2%)

Query: 67  YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
           Y +++K  +    V +   GF L S   +D   +     G  +V AS  +LN   +   D
Sbjct: 16  YIQVTKPGIIFGNVISVAGGFFLASKGHVDPVLMLAAVIGLSLVVASGCALNNCIDRDID 75

Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
           AKM+RT  R   +G IS+  A+ +  ++GVAG  LLA   N L A  AA   ++Y  VY+
Sbjct: 76  AKMQRTRNRVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYS 135

Query: 187 P-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCR 245
             LK+     T VG++ GA+PP++G+ A  G      +IL      WQ+PH  A+A    
Sbjct: 136 LYLKRNSVYGTLVGSLSGAMPPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAIAIFRF 195

Query: 246 NDYAAGGYRMISLADASGQR-TALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLA 304
           NDYAA G  +  L  A G   T L  +   L    +  L    G T   +   ++  +L 
Sbjct: 196 NDYAAAGIPV--LPVARGIAKTKLHIVLYILVFALVTALLPLAGYTGIGYLAVAAATSLW 253

Query: 305 ISAAAFSFYRDRT--TQKARKMFHASLLYL 332
             A A   YR     T  AR++F  S+L +
Sbjct: 254 WLAMALKGYRHAVDDTVWARQLFGFSILTI 283

Length = 306

>gnl|CDD|237239 PRK12869, ubiA, protoheme IX farnesyltransferase; Reviewed

 Score =  117 bits (296), Expect = 2e-30
 Identities = 75/279 (26%), Positives = 117/279 (41%), Gaps = 7/279 (2%)

Query: 67  YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
           Y +L K R+  L+   +  G+ L +   +    L     G  + +  + + N   E   D
Sbjct: 5   YLKLLKPRVIWLLDLAAVAGYFLAAKHGVSWLPLIPLLIGGTLASGGSAAFNHGIERDID 64

Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
             M RT +RP P G ++ + A+   S++   GTAL       LTA   A     YA VYT
Sbjct: 65  KVMSRTSKRPTPVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYT 124

Query: 187 P-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCR 245
             LK    +N  +G   G    L G+ +  G + L  ++L   +Y W   H  +LA   R
Sbjct: 125 IWLKPRTWLNIVIGGFAGNAAALAGYASGTGSLDLEAVLLSFLIYLWTPGHIWSLALKYR 184

Query: 246 NDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDW--GVTSGWFCLESSLITL 303
            DY   G  M+            +++ N L ++P   L Y +  G+         S   +
Sbjct: 185 EDYRRAGVPMLPAVVGEKTSVRAISISNAL-MIPYILLLYLYYIGLIGLILVAILSAALM 243

Query: 304 AISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFH 342
           A S  A     + T ++A KMF AS  YL +F+  L+  
Sbjct: 244 ATSIRA---LLNPTKEEAWKMFKASSPYLALFLLALIIS 279

Length = 279

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 93.3 bits (232), Expect = 1e-21
 Identities = 64/259 (24%), Positives = 100/259 (38%), Gaps = 7/259 (2%)

Query: 77  MLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRP 136
            L +     G AL +G  +DL  L       +++ A+ N LN  F+   DA       RP
Sbjct: 2   PLALLPVLAGLALAAGGVLDLLLLLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRP 61

Query: 137 LPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP---LKQIHP 193
           LPSGRIS R A+    ++ + G  LLA     L   L    L+L   +Y+P   LK+   
Sbjct: 62  LPSGRISPREALLLGLALLLLG-LLLALLLGPLLLLLGLLGLLLG-LLYSPPLRLKRRPL 119

Query: 194 VNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGY 253
           +   V  +   +  LLG  A  G +    ++L   ++   +   +             G 
Sbjct: 120 LGELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGI 179

Query: 254 RMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFY 313
           R + +    G++ AL      L    L  L     +      L   L+ LA+  AA    
Sbjct: 180 RTLPV--RLGRKRALALYALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLR 237

Query: 314 RDRTTQKARKMFHASLLYL 332
           R    + AR     +LL+ 
Sbjct: 238 RRNPEEPARTFLFIALLFG 256

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 66/281 (23%), Positives = 105/281 (37%), Gaps = 17/281 (6%)

Query: 67  YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
              L +   ++L++  +  G  L +     L  L        +  ++   +N L +   D
Sbjct: 16  LLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAFLAFFLARSAGYVINDLADREID 75

Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
               RT  RPLPSGR+SV+ A+  A  + + G   LA   N L   L+ + L+L A  Y 
Sbjct: 76  RINPRTKNRPLPSGRVSVKEALLLAILLLLLG-LALALLLNPLAFLLSLAALVL-ALAYP 133

Query: 187 PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCR- 245
            LK+   +   V  +   +  L G  A  G + L   +L  A   W     +    +   
Sbjct: 134 FLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILW----TLGYDIIYAI 189

Query: 246 ----NDYAAGGYRMISLADASGQRTAL-VALRNCLYLVPLGYLAYDWGVTSGWFCLESSL 300
                D  AG   + SL    G + AL +AL   L    L  L    G+    + L   +
Sbjct: 190 QDIEGDRKAG---LKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLLGLIYLLGLLV 246

Query: 301 ITLAISAAAFSFYRDRTTQKARKMFHA-SLLYLPVFMSGLL 340
             L +          R       +F    LL L +F+  +L
Sbjct: 247 AALLLLYQIL-IVDVRDPPACFALFDVNLLLGLLLFIGLIL 286

Length = 289

>gnl|CDD|183814 PRK12888, ubiA, prenyltransferase; Reviewed

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 22/212 (10%)

Query: 109 MVAAS--ANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASS---VGVAGTALLA 163
           MV A   A + N++ +   DA+  RT  R L +G +SVR A T A     V +   ALL 
Sbjct: 48  MVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVALAVFLGAAALLN 107

Query: 164 WKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGM 223
                L A LA + L++Y +     K+       +  +  A+ P+  W A  G  S   +
Sbjct: 108 PLCLAL-APLAVAPLVVYPYA----KRFTNFPHAILGLAQAVGPVGAWIAVTGTWSWPAV 162

Query: 224 ILPAALYFWQIPHFMALAYLCRN---DYAAGGYRMISLADASGQRTALVALRNCLYLVPL 280
           +L  A+  W I  F  L Y C++   D   G   + S+    G R AL A R    +   
Sbjct: 163 LLGLAVGLW-IGGF-DLIYACQDAEVDRRIG---VRSVPARFGVRAALWASRVAHVVTFA 217

Query: 281 GYLAYDWGVTSGWFCLESSLITLAISAAAFSF 312
            ++ +   V  G        I LAI+A AF++
Sbjct: 218 LFVWFGLAVGFGAL----WWIGLAITAGAFAY 245

Length = 284

>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 60/255 (23%), Positives = 100/255 (39%), Gaps = 20/255 (7%)

Query: 67  YWELSKA-----RLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLF 121
           Y +L +A      L +L         A  +G    L  L     G +++  +   +N ++
Sbjct: 4   YAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVGAILMRGAGCVINDIW 63

Query: 122 EISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILY 181
           +   D +++RT  RPL SG +SVR A+ +     +     +  + N LT  L  ++L L 
Sbjct: 64  DRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVA-LGVLLQLNPLTILLGVASLAL- 121

Query: 182 AFVYTPLKQIHPV-NTWVGAIVG-AIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMA 239
              Y  +K+I       +G   G      +GW A  G +S    +L  A   W + +   
Sbjct: 122 VATYPFMKRITYWPQLVLGLAFGWGAL--MGWAAVTGDLSTAAWVLYLANILWTLGYDTI 179

Query: 240 LAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESS 299
            A   + D    G +  S A   G  T        LY + +  LA   G+ +G       
Sbjct: 180 YAMQDKEDDIKIGVK--STALRFGDNTKPWLG--GLYALMILLLALA-GLIAGL----GP 230

Query: 300 LITLAISAAAFSFYR 314
           +  L ++AAA    R
Sbjct: 231 VYYLGLAAAALLLIR 245

This model represents a family of integral membrane proteins that condenses para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in E. coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 281

>gnl|CDD|183808 PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 16/153 (10%)

Query: 126 DAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVY 185
           DAK+ RT  RPLPSG++S + A  +     + G A+L  + N     L  ++L + A  Y
Sbjct: 100 DAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLL-QFNWFAIALGIASLAIVA-AY 157

Query: 186 TPLKQIHPVNTWVGAIV-------GAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFM 238
             +K+I    TW            GA   L+GW A  G +SL  ++L A    W I +  
Sbjct: 158 PFMKRI----TWWPQFFLGLAFSWGA---LMGWAAHFGSLSLAAVLLYAGSIAWTIGYDT 210

Query: 239 ALAYLCRNDYAAGGYRMISLADASGQRTALVAL 271
             A+  + D A  G +  +       +T LV  
Sbjct: 211 IYAHQDKEDDALIGVKSTARLFGDHTKTWLVLF 243

Length = 314

>gnl|CDD|233429 TIGR01475, ubiA_other, putative 4-hydroxybenzoate polyprenyltransferase

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 54/262 (20%), Positives = 96/262 (36%), Gaps = 22/262 (8%)

Query: 85  TGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISV 144
            G  L +     L  L       +    +A + N++ + + DA+  RT  RPL SG IS 
Sbjct: 23  AGALLAAKGLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISK 82

Query: 145 RHAVTWASSVGVAGTALL---AWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAI 201
           + A T      +   AL    ++  N L   L+   L++    Y   K+   +  +V   
Sbjct: 83  KEARTMI----ILSLALFLSASYFLNPLAFILSPLVLLVLII-YPYTKRFTFLCHYVLGS 137

Query: 202 VGAIPPLLGWTAAVGHVSLNGM--ILPAALYFWQ-----IPHFMALAYLCRNDYAAGGYR 254
              + PL GW A +G +S   +  +L   + FW      I       +    D   G   
Sbjct: 138 TYGLAPLAGWVAVIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEF----DRKNG--- 190

Query: 255 MISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYR 314
           + S+    G + AL        +  +  L   + V +G+  L + ++   I A       
Sbjct: 191 LHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIALLALILIGLILAYEHYIVD 250

Query: 315 DRTTQKARKMFHASLLYLPVFM 336
                K ++ F  +  +L +  
Sbjct: 251 PGDQSKIQRAFFYANGFLSITF 272

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 282

>gnl|CDD|237240 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 106 GTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWK 165
           G +  +A+   +N L++   D +++RT  RPL S R+SV+  +  A  V +   A LA+ 
Sbjct: 54  GALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIA-IVALLCAAGLAFF 112

Query: 166 ANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMIL 225
            N L+  L  + + +  F+Y   K++ PV   V AI      L+ W+A  GH+ L   +L
Sbjct: 113 LNPLSFWLCVAAVPV-IFLYPLAKRVFPVPQLVLAIAWGFAVLISWSAVTGHLDLGTWLL 171

Query: 226 PAALYFWQI 234
            AA  FW +
Sbjct: 172 WAATVFWTL 180

Length = 290

>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed

 Score = 47.1 bits (113), Expect = 7e-06
 Identities = 39/115 (33%), Positives = 52/115 (45%), Gaps = 14/115 (12%)

Query: 126 DAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLIL---YA 182
           D  +KRT  RPL SG +S + A+     V V    LL    N LT  L+ + L L   Y 
Sbjct: 70  DGHVKRTKNRPLASGAVSEKEAL-ALFVVLVLVAFLLVLTLNTLTIWLSVAALALAWIYP 128

Query: 183 FV--YTPLKQIHPVNTWVGAIVG-AIPPLLGWTAAVGHVSLNGMILPAALYFWQI 234
           F+  YT L Q+      +GA  G  IP  + + A  G V L   +L  A   W +
Sbjct: 129 FMKRYTHLPQVV-----LGAAFGWGIP--MAFAAVQGSVPLEAWLLFLANILWTV 176

Length = 282

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 14/130 (10%)

Query: 107 TMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKA 166
             +   + N++N  F+   D ++ R  R P+PSG +S R A+ ++  +  AG A LA+  
Sbjct: 47  VFLATGAGNAINDYFDREID-RINRPDR-PIPSGAVSPRGALAFSILLFAAGVA-LAFLL 103

Query: 167 NMLTAGLAASN---LILYA--FVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLN 221
             L   +A  N   L+LYA     TP       N  V  + G+    L   AAVG   L 
Sbjct: 104 PPLCLAIALFNSLLLVLYAETLKGTPGLG----NASVAYLTGST--FLFGGAAVGTEGLL 157

Query: 222 GMILPAALYF 231
            +++  AL  
Sbjct: 158 ALLVLFALAA 167

Length = 276

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 28/204 (13%)

Query: 116 SLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAW-------KANM 168
           S+N  F++  D   + T  RP+PSGR+S + A+  +  V +    L  W       +  M
Sbjct: 68  SVNDYFDLELDRVNEPT--RPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGM 125

Query: 169 LTAGLAASNLILYAFVYT--PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILP 226
           +      + L + A++Y+  PLK    + T   A VG     + + +A    +L   I P
Sbjct: 126 VIISSILAGLFV-AYIYSAPPLKLKKNILTSAPA-VGFSYGFITFLSA---NALFSDIRP 180

Query: 227 AALYFWQIPHFMALAYLCRNDY------AAGGYRMISLADASGQR-TALVA--LRNCLYL 277
             ++   +  FMA+A +  ND+        GG  + SL    G + T LV+  + + ++ 
Sbjct: 181 EVVWLAGLNFFMAIALIIMNDFKSVEGDKEGG--LKSLTVMIGAKNTFLVSFIIIDLVFA 238

Query: 278 VPLGYLAYDWGVTSGWFCLESSLI 301
           V   +LA+ WG T   + +   L+
Sbjct: 239 V-FAWLAWSWGFTVLMYFILVGLV 261

Length = 331

>gnl|CDD|237228 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 12/183 (6%)

Query: 59  LIRHYGRCYWELSKARLSM-----LVVATSGTGFALGSGSTIDLAGLCWTCT-GTMMVAA 112
            I      Y++L   RL       LV   +  G  L S S +    L      G++++ +
Sbjct: 2   DILMKFLAYFKLM--RLHKPIGILLVFFPTLFGLLLASHSLLPDISLLVLFIIGSVLMRS 59

Query: 113 SANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAV-TWASSVGVAGTALLAWKANMLTA 171
           +   +N +F+   D  + RT  RPL SG +SV+ A+      + +A   LL    N  T 
Sbjct: 60  AGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVILL--LLNKTTI 117

Query: 172 GLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYF 231
            L+   +IL   +Y  +K+              +  L+ + A    + +  ++L     F
Sbjct: 118 YLSFIAVIL-IVLYPLMKRFFYWPQLFLGFTFNMGILMAFAAVQNQLDIEAILLYIGCIF 176

Query: 232 WQI 234
           W I
Sbjct: 177 WTI 179

Length = 285

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 8/124 (6%)

Query: 85  TGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISV 144
            G+ + S   IDL G+        +V A  N +N +++I  D   K    RP+PSGRIS+
Sbjct: 24  IGYLIASNFKIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKINKP--ERPIPSGRISL 81

Query: 145 RHAVTWASS---VGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAI 201
           + A  ++ +   VG+  +  +   A  L A L +  L LYA        I   N  V  +
Sbjct: 82  KEAKIFSITLFIVGLILSIFINIYA-FLIALLNSILLYLYAKDLKKTGLIG--NLIVAYL 138

Query: 202 VGAI 205
            G  
Sbjct: 139 TGLS 142

Length = 279

>gnl|CDD|237247 PRK12886, ubiA, prenyltransferase; Reviewed

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 2/150 (1%)

Query: 83  SGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI 142
           +G G  L +      + L W     +    +A   N+L +   DA+  RT  R +P+G I
Sbjct: 27  AGIGAVLAALGLPGASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLI 86

Query: 143 SVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIV 202
           S   A+ +   +        AW  N L   L+   L  +  +Y+  K+   +   V    
Sbjct: 87  SKGSAILFI-VLSSLLMLFAAWFLNPLCLYLSPPALF-FLLLYSYCKRFTALAHVVLGFC 144

Query: 203 GAIPPLLGWTAAVGHVSLNGMILPAALYFW 232
            A+ PL  W A  G + L  ++L  A+ FW
Sbjct: 145 LALAPLGAWIAIRGTIELPAILLGLAVLFW 174

Length = 291

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 44/177 (24%), Positives = 64/177 (36%), Gaps = 16/177 (9%)

Query: 79  VVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLP 138
                 +G+  G      L  L     G +    S  S+N  F+   DA  +   +RP+P
Sbjct: 20  FCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFS-QSINDYFDRDVDAINEP--QRPIP 76

Query: 139 SGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLIL-YAFVYTPLKQIHPVNTW 197
           SG IS+R        + VAG  +     N L        ++L   +   P+K     N W
Sbjct: 77  SGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKR--NGW 134

Query: 198 VG-AIVGAIPPLLGWTAAVGHV---SLNGMILPAALYFWQIPHFMALAYLCRNDYAA 250
           +G   VG     L W A  GH     L    +  AL    I    A   +  ND+ +
Sbjct: 135 LGPPAVGLSYEGLPWMA--GHAIFAPLTWQSVVVAL----IYSLGAHGIMTLNDFKS 185

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 112 ASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTAL---LAWKANM 168
           +  N++N  F+   D K+ R   RPLP G +S + A+ ++  +   G AL   +  +A  
Sbjct: 51  SGGNTINDYFDYEID-KINRP-NRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEA-F 107

Query: 169 LTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNG 222
           L A  A   + LYA+   PL  I   N  V  + GA  P+ G   AVG + L G
Sbjct: 108 LFALGAYVLMFLYAWKLKPLPFIG--NVVVALLTGAT-PIYG-AIAVGRIGLAG 157

Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	414
PLN02776	341	prenyltransferase	100.0
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	100.0
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	100.0
PRK13362	306	protoheme IX farnesyltransferase; Provisional	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK12871	297	ubiA prenyltransferase; Reviewed	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.97
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	99.97
PRK05951	296	ubiA prenyltransferase; Reviewed	99.97
PRK12872	285	ubiA prenyltransferase; Reviewed	99.95
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.95
PRK13595	292	ubiA prenyltransferase; Provisional	99.95
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.95
PRK13592	299	ubiA prenyltransferase; Provisional	99.94
PRK13105	282	ubiA prenyltransferase; Reviewed	99.93
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.93
PRK08238	479	hypothetical protein; Validated	99.93
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.93
PRK12875	282	ubiA prenyltransferase; Reviewed	99.92
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.91
PLN02922	315	prenyltransferase	99.91
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.91
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.9
PLN02878	280	homogentisate phytyltransferase	99.89
PRK13591	307	ubiA prenyltransferase; Provisional	99.81
KOG4581	359	consensus Predicted membrane protein [Function unk	99.53
PRK12875	282	ubiA prenyltransferase; Reviewed	93.44
PRK12884	279	ubiA prenyltransferase; Reviewed	91.05
PRK12872	285	ubiA prenyltransferase; Reviewed	89.92
PRK12882	276	ubiA prenyltransferase; Reviewed	88.21
PRK13105	282	ubiA prenyltransferase; Reviewed	87.88
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	87.15
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	86.95
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	86.65
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	86.22
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	86.02
PRK13591	307	ubiA prenyltransferase; Provisional	85.66
PLN00012	375	chlorophyll synthetase; Provisional	85.31
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	84.18
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	84.16
PRK12871	297	ubiA prenyltransferase; Reviewed	83.43
PRK12874	291	ubiA prenyltransferase; Reviewed	82.93
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	82.92
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	82.66
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	82.28
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	82.16
PRK12888	284	ubiA prenyltransferase; Reviewed	80.37

>PLN02776 prenyltransferase

Probab=100.00  E-value=1.5e-70  Score=548.03  Aligned_cols=340  Identities=68%  Similarity=1.108  Sum_probs=309.3

Q ss_pred             HhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHH
Q 014998           70 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVT  149 (414)
Q Consensus        70 L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~  149 (414)
                      |+||+.+.+++++++.|+++|.++.+++..++++++|++++++++|++||++|+|+|++|+||++||||+|++|+++|+.
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~~~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~   80 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAIDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVA   80 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHH
Confidence            57999999999999999999976667888888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchhhhHhhhhcccccchhhhhccCCCChHHHHHHHHH
Q 014998          150 WASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAAL  229 (414)
Q Consensus       150 ~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~~~~~lL~~~~  229 (414)
                      ++++++++|+.++.+++|+.++.++++++++|.++||++||+|++|+++|++.|++|+++||+|++|++++.+|++++++
T Consensus        81 ~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avtg~~~~~~~~Lf~~~  160 (341)
T PLN02776         81 WAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTPLKQIHPANTWVGAVVGAIPPLMGWAAASGQLDAGAMVLAAAL  160 (341)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHccCCchhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            99999999997776678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 014998          230 YFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAA  309 (414)
Q Consensus       230 ~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~~~~~~il~~~  309 (414)
                      ++||++||+.++++|+|||+++|+||+|+..+.|++++.+++.+++.+++++++++.+|.++++|+++++++++++++..
T Consensus       161 ~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~~~~~~~a~~l~~~~l~~~  240 (341)
T PLN02776        161 YFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSSPFALEAALLTAYLAASA  240 (341)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999987789999999999999999999998889888889988999999999999


Q ss_pred             HHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccCCCccchhhhhhhccCCCCCccCchhhhhhhhhhccccccc
Q 014998          310 FSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEKIVELSSSSETVPVESEDMNRKKKLSYYSSLG  389 (414)
Q Consensus       310 ~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (414)
                      +++++++|.++++|+|+.|++|++++++++++|+++++++++.+++-+..+... +  ...++||+.++++++  +++.+
T Consensus       241 ~~~~~~~~~~~ar~~F~~Sl~yL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~--~~~~~  315 (341)
T PLN02776        241 ASFYREPTNANARKMFHGSLLYLPAFMALLLLHRVPNDNQVDLRQESELTESLD-G--RAKGREETSLEQVSK--RRAPG  315 (341)
T ss_pred             HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccchhhh-h--hhcchHHHHHHHHHh--hccCc
Confidence            999998888899999999999999999999999999988764333333333221 1  122467888888888  88899


Q ss_pred             cccCCcccccccCCCCCCCCCCCCC
Q 014998          390 RQVRAPVAYASVAPFPFLPAPSYAE  414 (414)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~  414 (414)
                      .+++||++|+|+|||||||+|+|+.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~  340 (341)
T PLN02776        316 RVARPPVAYASAAPFPFLPAPSYAS  340 (341)
T ss_pred             cccCCcchhhccCCCCCCCCCCcCC
Confidence            9999999999999999999999963

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.2e-59  Score=451.92  Aligned_cols=286  Identities=34%  Similarity=0.523  Sum_probs=274.9

Q ss_pred             hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccC
Q 014998           60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPS  139 (414)
Q Consensus        60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLps  139 (414)
                      .++++|+|+||+||+.+.+++++++.|+++|.++..++..++++.+|+.++.+++|++|+++|||+|++|+||++||+|+
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~   93 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRGSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVT   93 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCC
Confidence            67889999999999999999999999999998666788889999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccchhhhHhhhhcccccchhhhhccCCC
Q 014998          140 GRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHV  218 (414)
Q Consensus       140 G~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~  218 (414)
                      |+|+++||+.++.++.++|+.++++..|+++..+++++++.|+++||. +||+|++|+++|.+.|++||++||+|++|++
T Consensus        94 G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~PpliGwaAvtg~~  173 (304)
T COG0109          94 GLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAAVTGSI  173 (304)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccceeeeeccccccccceeeeeeCCC
Confidence            999999999999999999999997789999999999999999999999 9999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 014998          219 SLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLES  298 (414)
Q Consensus       219 ~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a  298 (414)
                      ++.++++++++|+||++|+|+++++.+|||+++|++|+|++.|. +.++++++.+.+.++++++++...|+.++.|.+++
T Consensus       174 ~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~-~~t~~~I~~y~~~l~~~sl~~~~~g~~g~~Y~v~a  252 (304)
T COG0109         174 SLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGE-RRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVA  252 (304)
T ss_pred             CchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccH-HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            99999999999999999999999999999999999999999986 88999999999999999999888899888899999


Q ss_pred             HHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 014998          299 SLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTD  346 (414)
Q Consensus       299 ~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~~~  346 (414)
                      .++++++++.++++++++|+++++|+|+.|+.|+.+++++++++++..
T Consensus       253 ~~l~~~~l~~a~~~~~~~~~~~A~klF~~S~~yL~~lf~~l~id~~~~  300 (304)
T COG0109         253 TLLGAWFLALAWKLYRKDDRKWARKLFKYSIIYLALLFVALLIDSLLL  300 (304)
T ss_pred             HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999998765

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=100.00  E-value=3e-60  Score=459.24  Aligned_cols=319  Identities=48%  Similarity=0.765  Sum_probs=284.2

Q ss_pred             HHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCC
Q 014998           61 RHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSG  140 (414)
Q Consensus        61 ~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG  140 (414)
                      .+.+++|+||.||+.+.+++.++..||+++.+. +++..++++.+|+.++++++|++||++|...|.+|+||++||||+|
T Consensus        91 ~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p-~s~~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g  169 (409)
T KOG1380|consen   91 GKYARCYLELSKPRLTMLVVLTTMTGYALAPGP-FSFPTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRG  169 (409)
T ss_pred             cchHHHHHHhcccceEEEEeeeccccccccccC-CCcchhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccccccC
Confidence            467899999999999999999999999999864 8898999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchhhhHhhhhcccccchhhhhccCCCCh
Q 014998          141 RISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSL  220 (414)
Q Consensus       141 ~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~~  220 (414)
                      +||+.+|+.|+.+.++.|+.++++-+|+++..+|..++++|.++||+|||+++.|+|+|+++|++||++||+|++|.++.
T Consensus       170 ~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTPlKrihiinTWvGavVGAIPPLMGwAAasg~l~~  249 (409)
T KOG1380|consen  170 RISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTPLKRIHIINTWVGAVVGAIPPLMGWAAASGLLDP  249 (409)
T ss_pred             ccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccchhhhhhhhhHHHHHhccCCccchhhhhccCCCc
Confidence            99999999999999999998887668999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 014998          221 NGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSL  300 (414)
Q Consensus       221 ~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~~  300 (414)
                      .+|+++.++|.||+|||+.+++..|+||.++|++|+++....+  .+++.+++++.+.+++...-.+|+++|||.+.++.
T Consensus       250 ga~iLa~~LyaWQfPHFnaLS~~lR~DYs~~GY~Mma~~np~l--~rr~alr~s~a~~~L~~~~~~~~lT~~wf~i~s~~  327 (409)
T KOG1380|consen  250 GAMILAGILYAWQFPHFNALSWNLRNDYSKAGYRMMAVTNPGL--CRRVALRYSLAFLPLSYAAPSTDLTTWWFAIESLP  327 (409)
T ss_pred             cHHHHHHHHHHhcccchhhhhhhhchhhhhccEEEEEeeccch--hhHHHHHHHHHHhhhhccccccCcccceeeecccc
Confidence            9999999999999999999999999999999999999998632  34567889999998887777789999999999999


Q ss_pred             HHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccCCCccchhhhhhhccCCCCCccCchhhhhhhh
Q 014998          301 ITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEKIVELSSSSETVPVESEDMNRKK  380 (414)
Q Consensus       301 ~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (414)
                      +++++.+.+++|++++|.+++||+|+.|+++++++|+++++|+.-++.|+.+-+++..      +. .  ...|...|.+
T Consensus       328 ~na~l~~~afkFY~~~d~~~aRklF~aSLlhLP~lmll~l~~k~~~~~qq~~~~~~~l------~~-~--~sg~~~s~~~  398 (409)
T KOG1380|consen  328 LNAYLAYLAFKFYRDRDYHNARKLFFASLLHLPLLMLLMLIHKKGRDNQQPDGEEPGL------TN-S--VSGEVKSQRS  398 (409)
T ss_pred             HhHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccCcc------cc-c--cccceecccc
Confidence            9999999999999999999999999999999999999999999877555333222111      11 1  2344444444


Q ss_pred             hhccccccccccCCcccc
Q 014998          381 KLSYYSSLGRQVRAPVAY  398 (414)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~  398 (414)
                      |.       ...+||++|
T Consensus       399 ~~-------~~~~~~v~~  409 (409)
T KOG1380|consen  399 KG-------DVLKPPVAF  409 (409)
T ss_pred             cc-------cccCCCCCC
Confidence            44       258888876

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=1.3e-52  Score=416.29  Aligned_cols=287  Identities=30%  Similarity=0.369  Sum_probs=259.7

Q ss_pred             HhHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCcc
Q 014998           59 LIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLP  138 (414)
Q Consensus        59 ~~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLp  138 (414)
                      ..++++|+|+|++||+++.++.+++++|++++..+.+++..+++++++++++++++|++|||+|+|+|++|+||++||+|
T Consensus         8 ~~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlp   87 (306)
T PRK13362          8 LWEASLKDYIQVTKPGIIFGNVISVAGGFFLASKGHVDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTV   87 (306)
T ss_pred             hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCC
Confidence            45677899999999999999999999999998655678777778889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccchhhhHhhhhcccccchhhhhccCC
Q 014998          139 SGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGH  217 (414)
Q Consensus       139 sG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~nv~vG~~~Galp~l~G~~A~~g~  217 (414)
                      +|++|++||+.++++++++|+.++..+.|+.+..++.+++++|.++||+ +||++++|.++|++.|++|+++||++++|+
T Consensus        88 sG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~vgg~~ga~p~l~G~~a~~g~  167 (306)
T PRK13362         88 TGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCAVTGQ  167 (306)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999998776567999888888888878999996 999999988888888899999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 014998          218 VSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLE  297 (414)
Q Consensus       218 ~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~  297 (414)
                      +++..+++++..++||++||+.++++|+|||+++|+||+|++.|. +++++++..+.+.+++++++++..|..++.|...
T Consensus       168 ~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~-~~t~~~~~~~~~~~~~~s~l~~~~g~~g~~y~~~  246 (306)
T PRK13362        168 FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGI-AKTKLHIVLYILVFALVTALLPLAGYTGIGYLAV  246 (306)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecCh-HHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence            999999999999999999999999999999999999999999985 6777778888888889999999999877888888


Q ss_pred             HHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 014998          298 SSLITLAISAAAFSFYRDR--TTQKARKMFHASLLYLPVFMSGLLFHRLTD  346 (414)
Q Consensus       298 a~~~~~~il~~~~~~~~~~--~~~~a~~~F~~s~~~l~~~l~~~li~~~~~  346 (414)
                      +++.++++++.++++++++  +++++||+|+.|++|++++++.++++++.-
T Consensus       247 ~~~~~~~~l~~a~~~~~~~~~~~~~a~~~f~~S~~yl~~~~~~~~~~~~~~  297 (306)
T PRK13362        247 AAATSLWWLAMALKGYRHAVDDTVWARQLFGFSILTITALSVMMLLDFVVA  297 (306)
T ss_pred             HHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            8888899999999888743  456799999999999999999999987543

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=6.7e-52  Score=409.65  Aligned_cols=285  Identities=34%  Similarity=0.492  Sum_probs=255.9

Q ss_pred             HHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCC
Q 014998           61 RHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSG  140 (414)
Q Consensus        61 ~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG  140 (414)
                      +.++|+|+|++||+++++..+++++|++++.++.+++..+++++++++++++++|++|||+|+|+|++|+||++||||+|
T Consensus         7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG   86 (296)
T PRK04375          7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTG   86 (296)
T ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCC
Confidence            44689999999999999999999999999975567887788899999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccchhhhHhhhhcccccchhhhhccCCCC
Q 014998          141 RISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVS  219 (414)
Q Consensus       141 ~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~  219 (414)
                      ++|++||+.++.++.++|+++++.+.|+.+..++++++++|.++||+ +||++++|+++|.+.|++|+++||++++|+++
T Consensus        87 ~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~  166 (296)
T PRK04375         87 RISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLIGWAAVTGSLS  166 (296)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhcCCccchHHHHHHHHhHHHHHHHHhCCCCC
Confidence            99999999999999999998876557888888888887767889998 99999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 014998          220 LNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESS  299 (414)
Q Consensus       220 ~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~  299 (414)
                      +.++++++..++||++||+.++++|+|||+++|+||+|+.+|. +++.+.+..+.+.++.++++++..|..+++|++.++
T Consensus       167 ~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  245 (296)
T PRK04375        167 WEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGI-RVTKRQILLYTVLLVAVSLLPVLLGMAGLLYLVVAL  245 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCH-HHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            9999999999999999999999999999999999999999984 666666677777777778888887765677877677


Q ss_pred             HHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 014998          300 LITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTD  346 (414)
Q Consensus       300 ~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~~~  346 (414)
                      +.++.+++..+++.+++++++|+|+|+.+++|+.+++++++++.+..
T Consensus       246 ~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~~~i~~~~~~~~~~~  292 (296)
T PRK04375        246 LLGAWFLYYAWRLYRKDDRKWARKLFRYSINYLTLLFVALLVDHLLL  292 (296)
T ss_pred             HHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77888888888888888889999999999999999999999987643

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=2.7e-50  Score=395.22  Aligned_cols=277  Identities=25%  Similarity=0.346  Sum_probs=240.7

Q ss_pred             hHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998           63 YGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI  142 (414)
Q Consensus        63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I  142 (414)
                      ++|+|+|++||+++.+..+++++|++++.++.+++..+++++++++++++++|++|||+|+|+|++|+||++||+|+|++
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~i   80 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLV   80 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCc
Confidence            47899999999999999999999999986656788778888999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccchhhhHhhhhcccccchhhhhccCCCChH
Q 014998          143 SVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLN  221 (414)
Q Consensus       143 S~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~~~  221 (414)
                      |++||+.+++++.++|+.++..++|+.+..+..++.++|+++||. +||++++|+++|.+.|++++++||++++|++++.
T Consensus        81 s~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~~~  160 (279)
T PRK12869         81 NRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFAGNAAALAGYASGTGSLDLE  160 (279)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccCChHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999998886448888765555556667899998 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 014998          222 GMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLI  301 (414)
Q Consensus       222 ~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~~~  301 (414)
                      ++++++.+++|+.+|+|.++++|+|||+++|+||+|+++|. +++.+++..+....+.++.+++. +..++.|++..++.
T Consensus       161 ~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~-~~a~~~~~~~~~~~~~~~~~~~~-~~~g~~y~~~~~~~  238 (279)
T PRK12869        161 AVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGE-KTSVRAISISNALMIPYILLLYL-YYIGLIGLILVAIL  238 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecH-HHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999984 55655555555545555555544 33356777766667


Q ss_pred             HHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHH
Q 014998          302 TLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLF  341 (414)
Q Consensus       302 ~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li  341 (414)
                      +..+++.+.++++++++++|+|+|+.|++|++++++++++
T Consensus       239 ~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~~~~~~~~~  278 (279)
T PRK12869        239 SAALMATSIRALLNPTKEEAWKMFKASSPYLALFLLALII  278 (279)
T ss_pred             HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777888888888888999999999999999999987765

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=100.00  E-value=4.6e-50  Score=393.38  Aligned_cols=277  Identities=38%  Similarity=0.572  Sum_probs=246.4

Q ss_pred             HHHHhHhhhhHHHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCC
Q 014998           65 RCYWELSKARLSMLVVATSGTGFALGSGST-IDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRIS  143 (414)
Q Consensus        65 k~yl~L~RP~~~~~~~~~~~~G~llA~~~~-~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS  143 (414)
                      |+|+|++||+++.++.+++++|++++.+.. +++..+++++++++++++++|++|||+|+|+|++|+||++||+|+|++|
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is   80 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGALVNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRIS   80 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcC
Confidence            479999999999999999999999986543 6787888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc-CCCcccchhhhHhhhhcccccchhhhhccCCCChHH
Q 014998          144 VRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT-PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNG  222 (414)
Q Consensus       144 ~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt-~lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~~~~  222 (414)
                      ++||+.+++++.++|+.++..+.|+.+..++++++++|.++|| .+||++++|+++|.+.|++|+++||++++|++++..
T Consensus        81 ~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~~~~  160 (280)
T TIGR01473        81 PREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSISLGA  160 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcChhhccCCchhHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            9999999999999998866556899999999998877789999 499999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 014998          223 MILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLIT  302 (414)
Q Consensus       223 ~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~~~~  302 (414)
                      ++++...++||++|++.++++|+|||+++|+||+|+++|. +++...+..+.+.+++++++++..+..++.|++.+++.+
T Consensus       161 ~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~  239 (280)
T TIGR01473       161 WLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGE-RITKRQIALYTAALLPVSLLLAFLGGTGWLYLIVATLLG  239 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCH-HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999984 555555666666677777777766665677877777788


Q ss_pred             HHHHHHHHHhhcCC-cHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014998          303 LAISAAAFSFYRDR-TTQKARKMFHASLLYLPVFMSGLLFH  342 (414)
Q Consensus       303 ~~il~~~~~~~~~~-~~~~a~~~F~~s~~~l~~~l~~~li~  342 (414)
                      ..+++.++++.+++ ++++|++.|+.+++|++++++++++|
T Consensus       240 ~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~~~  280 (280)
T TIGR01473       240 ALFLYLAFKFYRDPTDRKKARKLFKFSLIYLALLFVALLID  280 (280)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88888888888877 67789999999999999999887764

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5e-49  Score=388.34  Aligned_cols=282  Identities=19%  Similarity=0.235  Sum_probs=236.5

Q ss_pred             hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccC
Q 014998           60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPS  139 (414)
Q Consensus        60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLps  139 (414)
                      +.+++|+|+||+||++..+..+++++|+++|.++.+++..+++++++++++++++|++|||+|+|+|++|+||++||+|+
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~~~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~s   83 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPGASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPA   83 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCC
Confidence            34678999999999999999999999999997666787778889999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchhhhHhhhhcccccchhhhhccCCCC
Q 014998          140 GRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVS  219 (414)
Q Consensus       140 G~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~  219 (414)
                      |++|++||+.+.+.+.+.++ ++..+.|+.++.++++++++ .++||++||+++++.+++++.+++++++||.+++|+++
T Consensus        84 G~is~~~A~~~~~~~~~~~~-~l~~~~~~~~~~l~~~~~~~-~~~Y~~~Kr~t~~~~~~~g~~~~~~~l~g~~a~~g~~~  161 (291)
T PRK12886         84 GLISKGSAILFIVLSSLLML-FAAWFLNPLCLYLSPPALFF-LLLYSYCKRFTALAHVVLGFCLALAPLGAWIAIRGTIE  161 (291)
T ss_pred             CCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHhhhhccccccHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            99999999998655444444 44346899999999888887 89999999999997666666678999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 014998          220 LNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESS  299 (414)
Q Consensus       220 ~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~  299 (414)
                      +.++++++..++||.+||+.++++|+|||+++|+||+|+++|. +++.+++..+....+.++++++..+..++.|++.++
T Consensus       162 ~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~  240 (291)
T PRK12886        162 LPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV-NGSLWIARVFHLLMIGFLFALGISAGLGPWFLAGLA  240 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc-hhHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999984 555555545555555566666555544567777666


Q ss_pred             HHHHHHHHHHHHhhcCCc-HHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 014998          300 LITLAISAAAFSFYRDRT-TQKARKMFHASLLYLPVFMSGLLFHRLT  345 (414)
Q Consensus       300 ~~~~~il~~~~~~~~~~~-~~~a~~~F~~s~~~l~~~l~~~li~~~~  345 (414)
                      +.+..+++ +.+..+++| ++.|++.|+.|.+++.+++++++++.+.
T Consensus       241 ~~~~~~l~-~~~~~~~~~~~~~~~~~F~~~~~~~~~l~~~~~~~~~~  286 (291)
T PRK12886        241 VTGILLLY-EHWLLRGGDLTRLDAAFFNMNGYISVTLFAATLFDRLF  286 (291)
T ss_pred             HHHHHHHH-HHHHhCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            77777675 566677777 4689999999888887899999988654

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.1e-49  Score=387.69  Aligned_cols=281  Identities=19%  Similarity=0.169  Sum_probs=227.5

Q ss_pred             HhHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCC
Q 014998           59 LIRHYGRCYWELSKARLSMLVVATSGTGFALGS-----GSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTM  133 (414)
Q Consensus        59 ~~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~-----~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~  133 (414)
                      ++++++|+|+|++||+++++..+.+++|++++.     .+.+++..+++++++++++++++|++|||+|+|+|++|+||+
T Consensus         3 ~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~   82 (291)
T PRK12874          3 KFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTA   82 (291)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCC
Confidence            577899999999999999999999999999886     345788888899999999999999999999999999999999


Q ss_pred             CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchhhhHhhhhcccccchhhhh
Q 014998          134 RRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTA  213 (414)
Q Consensus       134 ~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~nv~vG~~~Galp~l~G~~A  213 (414)
                      +||+|+|++|++||+.+++++.++++.+++ ++|+.+..+++..++. +++||++||+++++.+++++.+++|+++||.+
T Consensus        83 ~RPl~sG~is~~~a~~~~~~~~~~~~~~~~-~~n~~~~~l~~~~~~~-~~~Y~~~KR~t~~~~~~~g~~~~~~~l~G~~a  160 (291)
T PRK12874         83 NRPSVDGRISVKSMVLFIVLNALIFIGVSY-FINPLAFKLSFPFLIV-LGGYSYFKRFSSLAHLVLGLSLGLAPIAGVVA  160 (291)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHhhhcccccccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998887777664 6899999888665554 89999999999996555555678999999999


Q ss_pred             ccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 014998          214 AVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGW  293 (414)
Q Consensus       214 ~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~  293 (414)
                      ++|.+++..+++++..++||.+||+.++++|+|||+++|+||+|+++|. +++.+++..+.. +..+.++....+....+
T Consensus       161 v~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  238 (291)
T PRK12874        161 VLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE-KATLFISRLFHL-LAVLFWLLFVWCAHLGL  238 (291)
T ss_pred             HcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh-HhHHHHHHHHHH-HHHHHHHHHHHHhcchH
Confidence            9999998899999999999999999999999999999999999999974 444444333333 22233332222333335


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHH-HHHHHHHh
Q 014998          294 FCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFM-SGLLFHRL  344 (414)
Q Consensus       294 y~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l-~~~li~~~  344 (414)
                      |++++++++.++++.++++.++++++. ++.|+.++.|+++++ ++++++.+
T Consensus       239 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ff~sn~~l~~l~~~~~~~~~~  289 (291)
T PRK12874        239 FAYLGVIVSALILLYEHYLVRKDFKKI-DKAFFTLNGYLGIVFFIFIVLDVL  289 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555677778777888888887777664 557666666665544 55566654

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.2e-48  Score=384.85  Aligned_cols=278  Identities=20%  Similarity=0.172  Sum_probs=232.3

Q ss_pred             HhHHHHHhH---hhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCcc
Q 014998           62 HYGRCYWEL---SKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLP  138 (414)
Q Consensus        62 ~~lk~yl~L---~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLp  138 (414)
                      +++++|+||   .||....++++++++|++++.++.+++..++++++|++++++++|++||++|+|+|++|+||++||+|
T Consensus         5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~~~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~   84 (294)
T PRK12873          5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPSLLLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLA   84 (294)
T ss_pred             HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCC
Confidence            458899999   67888999999999999988765577877889999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhcCCCcccchhhhHhhhhcccccchhhhhcc
Q 014998          139 SGRISVRHAVTWASSVGVAGTALLAWK---ANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAV  215 (414)
Q Consensus       139 sG~IS~~~Al~~~~~l~~~gl~ll~~~---~n~~~~~l~l~~l~ly~~iYt~lKr~t~~nv~vG~~~Galp~l~G~~A~~  215 (414)
                      +|++|++||+.+++++.++++.+++.+   .|+.++.+++++++. +++||++||+|+++++++++.+++|+++||.|++
T Consensus        85 sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~-~~~Y~~~KR~t~~~~~vlg~~~a~~~l~gw~Av~  163 (294)
T PRK12873         85 RGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPP-ILIYPSAKRWFAYPQAILALCWGFAVLIPWAAAE  163 (294)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH-HHHHHHHHhccccchHHHHHHHHhHHHHHHHHHh
Confidence            999999999999999999998877533   378899999888885 8999999999999877777677899999999999


Q ss_pred             CCCChH--HHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 014998          216 GHVSLN--GMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGW  293 (414)
Q Consensus       216 g~~~~~--~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~  293 (414)
                      |++++.  .+++++.+++||++||++|++||+|||+++|+||+|+++|. +.+......+.+..+.+...++..+++ +.
T Consensus       164 g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~~g~~~~l~-~~  241 (294)
T PRK12873        164 GSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLALAAFIAQVG-FI  241 (294)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHHHHHHhCCc-HH
Confidence            998863  44556899999999999999999999999999999999983 444444566666666677777888884 56


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014998          294 FCLESSLITLAISAAAFSFYRDRT--TQKARKMFHASLLYLPVFMSGLLFHR  343 (414)
Q Consensus       294 y~~~a~~~~~~il~~~~~~~~~~~--~~~a~~~F~~s~~~l~~~l~~~li~~  343 (414)
                      |++. +++...++...+..++.++  +++|.+.|+.|.+.+.++++++++++
T Consensus       242 y~~~-~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~G~~i~~g~~~~~  292 (294)
T PRK12873        242 FWPF-WLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVILGSLLLLGLILAR  292 (294)
T ss_pred             HHHH-HHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            6643 3333333434455566655  58999999999999999999988753

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.6e-48  Score=383.28  Aligned_cols=275  Identities=16%  Similarity=0.136  Sum_probs=224.1

Q ss_pred             hHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998           63 YGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI  142 (414)
Q Consensus        63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I  142 (414)
                      ++|.|+|++||++++++++++++|+++|.++.+++..+++.+++++++++++|++||++|+|+|++|+||++||||+|++
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~~~~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~i   81 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIHPIKILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRI   81 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCC
Confidence            57899999999999999999999999997655676677788889999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccch-hhhHhhhhcccccchhhhhccCCCCh-
Q 014998          143 SVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPV-NTWVGAIVGAIPPLLGWTAAVGHVSL-  220 (414)
Q Consensus       143 S~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~-nv~vG~~~Galp~l~G~~A~~g~~~~-  220 (414)
                      |++||+.+.++++++|+.++. ++|++++.++...+.+ ...|+++||+|++ |+++|...| +++++||.|++|++++ 
T Consensus        82 s~~~A~~~~~~~~~~~~~~~~-~ln~l~~~l~~~~~~l-~~~yp~~KR~t~~~~~~lG~~~g-~~~l~g~~Av~g~~~~~  158 (286)
T PRK12895         82 KMREAIAFTIIFIAIFEICTF-LLNRLVFILSPIVIFL-FIIDPFLKRYTAWRHIYMGSIIG-LGVLAGYLAVIPAFPYN  158 (286)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHHHHHhCccccHHHHHHHHH-hHHHHHHHHHcCCCCch
Confidence            999999999999999987664 7899999988887766 5667779999999 588999997 8999999999998864 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHH--HHHHHHHHHHHHHHHhhchhHHHHHH
Q 014998          221 -NGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVAL--RNCLYLVPLGYLAYDWGVTSGWFCLE  297 (414)
Q Consensus       221 -~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~--~~~l~lv~ls~l~~~~gl~~~~y~~~  297 (414)
                       .++++++..++|+.++|++|++||+|||++.|+||+|+++|  ++++..+.  .+.+..+.+...++..+  +++|++ 
T Consensus       159 ~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG--~~~~~~i~~~~~~~~~~~~~~~g~~~~--~~~y~~-  233 (286)
T PRK12895        159 LLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYG--IKNGLYISDIFHISSLILFWISGIYIR--TLWYLA-  233 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHC--CccHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHH-
Confidence             45678999999999999999999999999999999999997  44443322  22232222222333333  455654 


Q ss_pred             HHHHHHHHHHHHHHhhcCCcHHHH-HHHHHHhhHHHHHHHHHHHHHHhh
Q 014998          298 SSLITLAISAAAFSFYRDRTTQKA-RKMFHASLLYLPVFMSGLLFHRLT  345 (414)
Q Consensus       298 a~~~~~~il~~~~~~~~~~~~~~a-~~~F~~s~~~l~~~l~~~li~~~~  345 (414)
                      ++++...++.+.....+.+|+++| .+.|+.|.+++.+++++++++...
T Consensus       234 ~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~~N~~ig~~~~~~~~~~~~~  282 (286)
T PRK12895        234 ALIIIYTLVIYQHLIIDPRNPINKRMSFFNANSFIGFVFLIGIILSLRF  282 (286)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCHHHHHHHHHHHHHhcc
Confidence            444444444444566777888999 567889999999999998888654

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=6.5e-48  Score=378.81  Aligned_cols=276  Identities=20%  Similarity=0.214  Sum_probs=236.8

Q ss_pred             HHhHHHHHhHhh---hhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCc
Q 014998           61 RHYGRCYWELSK---ARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPL  137 (414)
Q Consensus        61 ~~~lk~yl~L~R---P~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPL  137 (414)
                      ++++++|+|++|   |+...+.++++++|++++.++.+++..+++++++++++++++|++||++|+|+|++|+||++||+
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~~~~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   81 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPDLWVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPL   81 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCC
Confidence            467899999996   66677888899999999876667777778888999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchh-hhHhhhhcccccchhhhhccC
Q 014998          138 PSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVN-TWVGAIVGAIPPLLGWTAAVG  216 (414)
Q Consensus       138 psG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~n-v~vG~~~Galp~l~G~~A~~g  216 (414)
                      |+|++|++||+.++.++.++|+++++ .+|+.++.++++++++ .++||++||++.++ +++|... ++++++||.++++
T Consensus        82 ~sG~is~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~~~~~~~-~~~Y~~~Kr~~~~~~~~~g~~~-g~~~~~g~~a~~~  158 (282)
T PRK12848         82 ASGAVSEKEALALFVVLVLVAFLLVL-TLNTLTIWLSVAALAL-AWIYPFMKRYTHLPQVVLGAAF-GWGIPMAFAAVQG  158 (282)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHHhHHhcCcccHHHHHHHH-HHHHHHHHHHHhC
Confidence            99999999999999999999987764 6899999999888887 88999899999885 5556655 5888999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 014998          217 HVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCL  296 (414)
Q Consensus       217 ~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~  296 (414)
                      ++++.++++++..++|+.+||+.++++|+|||+++|+||+|++.|. +++.+.+..+.+.++.++++++..+++ ++|++
T Consensus       159 ~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~  236 (282)
T PRK12848        159 SVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR-YDKLIIGLLQLATLALLAWAGWLLGLG-WAYYW  236 (282)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc-ccHHHHHHHHHHHHHHHHHHHHHhcCc-HHHHH
Confidence            9999999999999999999999999999999999999999999985 555555566666677777888888884 66765


Q ss_pred             HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014998          297 ESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFH  342 (414)
Q Consensus       297 ~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~  342 (414)
                      ...+.++.+++. ...++.+++++|++.|+.|.+++++++++++++
T Consensus       237 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~F~~n~~~g~~l~~~~~~~  281 (282)
T PRK12848        237 GLLVAAALFVYQ-QKLIRDREREACFKAFLNNNWVGLVLFAGIAAS  281 (282)
T ss_pred             HHHHHHHHHHHH-HHHcCCCCHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            555555555555 456777889999999999999999999988876

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.6e-47  Score=381.24  Aligned_cols=282  Identities=21%  Similarity=0.219  Sum_probs=237.4

Q ss_pred             hHhHHhHHHHHhHh---hhhHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHHHHHHHHhhccccccccccC
Q 014998           58 SLIRHYGRCYWELS---KARLSMLVVATSGTGFALGSGS-----TIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKM  129 (414)
Q Consensus        58 ~~~~~~lk~yl~L~---RP~~~~~~~~~~~~G~llA~~~-----~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~  129 (414)
                      ..++.++++|+||+   ||+.+.+.++++++|+++|.+.     ..++..+++++++++++++++|++|||+|+|+|++|
T Consensus        24 ~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~  103 (314)
T PRK12878         24 RRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYNDIVDRDIDAKV  103 (314)
T ss_pred             hhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            34668899999999   9999999999999999998653     567777888999999999999999999999999999


Q ss_pred             CCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchhhhHhhhhcccccch
Q 014998          130 KRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLL  209 (414)
Q Consensus       130 ~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~nv~vG~~~Galp~l~  209 (414)
                      +||++||+|+|++|++||+.++.++.++|+.+++ ..|+.++.++++++++ +++||++||+++++..++++.+++++++
T Consensus       104 ~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~-~~~~~~~~l~~~~~~~-~~~Y~~~KR~t~~~~~~~Gl~~~~~~l~  181 (314)
T PRK12878        104 ARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLL-QFNWFAIALGIASLAI-VAAYPFMKRITWWPQFFLGLAFSWGALM  181 (314)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998875 6799999999999888 8999999999999755544456799999


Q ss_pred             hhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014998          210 GWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGV  289 (414)
Q Consensus       210 G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl  289 (414)
                      ||++++|++++.++++++..++|+.+||++++++|+|||+++|+||+|+++|. +++.+....+.+.++.+++.++..++
T Consensus       182 g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~-~~~~~~~~~~~~~~~~~~l~~~~~~~  260 (314)
T PRK12878        182 GWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD-HTKTWLVLFYGLAVLLMGLAFWLAGV  260 (314)
T ss_pred             HHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch-hhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999984 55555555555555555555566676


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 014998          290 TSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRL  344 (414)
Q Consensus       290 ~~~~y~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~  344 (414)
                       +++|++..+..++.+.+. ....+.+++++|+++|+.|..++++++++++++.+
T Consensus       261 -~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~F~~n~~~~~ll~~~l~~~~~  313 (314)
T PRK12878        261 -PLLALLGLLAAAAHLAWQ-IARLDIDDPDQCLRLFKSNRDAGLLIFLGLVVGGL  313 (314)
T ss_pred             -cHHHHHHHHHHHHHHHHH-HHHcccCChHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence             466665444444443333 33334567888999999999999999999988754

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1e-47  Score=378.81  Aligned_cols=280  Identities=18%  Similarity=0.188  Sum_probs=233.6

Q ss_pred             hHHhHHHHHhHhhhhH---HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCC
Q 014998           60 IRHYGRCYWELSKARL---SMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRP  136 (414)
Q Consensus        60 ~~~~lk~yl~L~RP~~---~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RP  136 (414)
                      ++.++++|+|++||++   ..+.++++++|+++|.++.+++..++++++|++++++++|++||++|+|+|++|+||++||
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~~~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RP   84 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPPLPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRP   84 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCC
Confidence            4568899999986555   6667789999999987667788878889999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchh-hhHhhhhcccccchhhhhcc
Q 014998          137 LPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVN-TWVGAIVGAIPPLLGWTAAV  215 (414)
Q Consensus       137 LpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~n-v~vG~~~Galp~l~G~~A~~  215 (414)
                      ||+|++|++||+.+++++.++|+.++. ++|+.++.+++.+++. .++||++||+++++ +++|... ++++++||.+++
T Consensus        85 L~sG~is~~~a~~~~~~~~~~~~~l~~-~l~~~~~~l~~~~~~~-~~~Y~~~KR~t~~~~~~lg~~~-~~~~l~g~~a~~  161 (290)
T PRK12870         85 LASRRLSVKVGIVIAIVALLCAAGLAF-FLNPLSFWLCVAAVPV-IFLYPLAKRVFPVPQLVLAIAW-GFAVLISWSAVT  161 (290)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHhhhhhhccccceeeehHHH-HhHHHHHHHHHc
Confidence            999999999999999999999998775 6899999999888876 89999999999995 5666655 589999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 014998          216 GHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFC  295 (414)
Q Consensus       216 g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~  295 (414)
                      |++++.++++++..++|+.+||++++++|+|||+++|+||+|+++|. +++......+.+..+.++.+++..|++ ++|+
T Consensus       162 g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~-~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~y~  239 (290)
T PRK12870        162 GHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGR-YAPEAIGLFFALTVGFLAILGVLLELH-LPFW  239 (290)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhcc-ccHHHHHHHHHHHHHHHHHHHHHhCCc-HHHH
Confidence            99999999999999999999999999999999999999999999974 333333344555566677778888875 5666


Q ss_pred             HHHHHHHHHHHHHHHHhh-cCCcHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 014998          296 LESSLITLAISAAAFSFY-RDRTTQKARKMFHASLLYLPVFMSGLLFHRL  344 (414)
Q Consensus       296 ~~a~~~~~~il~~~~~~~-~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~  344 (414)
                      +...+....+.++...+. +.++++.|++.|+.|.+++.+++++++++.+
T Consensus       240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~g~~~~~~~~~~~~  289 (290)
T PRK12870        240 IGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWIGFLLLAGMILGSL  289 (290)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            433333445455544433 3356778999999999999999999988765

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=8.4e-47  Score=372.01  Aligned_cols=279  Identities=20%  Similarity=0.230  Sum_probs=228.1

Q ss_pred             hHHhHHHHHhHhh---hhHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCC
Q 014998           60 IRHYGRCYWELSK---ARLSMLVVATSGTGFALGS--GSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMR  134 (414)
Q Consensus        60 ~~~~lk~yl~L~R---P~~~~~~~~~~~~G~llA~--~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~  134 (414)
                      +++++++|+||+|   |..+.+..+|..+|..++.  ++.+++..++++++|++++++++|++||++|+|+|++|+||++
T Consensus         2 ~~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~   81 (289)
T PLN02809          2 LPPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTKL   81 (289)
T ss_pred             CchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCC
Confidence            3568899999875   7778888889988888774  3347787788899999999999999999999999999999999


Q ss_pred             CCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchh-hhHhhhhcccccchhhhh
Q 014998          135 RPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVN-TWVGAIVGAIPPLLGWTA  213 (414)
Q Consensus       135 RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~n-v~vG~~~Galp~l~G~~A  213 (414)
                      ||||+|++|++||+.+..++.++|+.+++ ++|+.++.++++++++ +++||++||+++++ ++.|. .+++++++||.+
T Consensus        82 RPL~sG~is~~~A~~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~~-~~~Y~~~KR~t~~~~~~lg~-~~~~~~l~g~~a  158 (289)
T PLN02809         82 RPIASGALTPFQGVGFLGAQLLLGLGILL-QLNNYSRILGASSLLL-VFTYPLMKRFTFWPQAFLGL-TFNWGALLGWAA  158 (289)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHhHHHhcCcchHHHHHH-HHHHHHHHHHHH
Confidence            99999999999999999999999998875 6799999999998877 89999999999996 55555 557999999999


Q ss_pred             ccCCCChHHHH-HHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHH-HHHHHHHHHHHHhhchh
Q 014998          214 AVGHVSLNGMI-LPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNC-LYLVPLGYLAYDWGVTS  291 (414)
Q Consensus       214 ~~g~~~~~~~l-L~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~-l~lv~ls~l~~~~gl~~  291 (414)
                      ++|++++..++ ++...++|+++||+++++||+|||+++|+||+|+++|  ++++.++..+. +....+...++..+++ 
T Consensus       159 v~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G--~~~~~~i~~~~~~~~~~l~~~g~~~~~~-  235 (289)
T PLN02809        159 VKGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFG--DDTKLWLTGFGAASIGGLALSGYNAGLG-  235 (289)
T ss_pred             HhCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhc--HHHHHHHHHHHHHHHHHHHHHHHHhcCc-
Confidence            99998877765 8888999999999999999999999999999999997  44555543322 2223333345556664 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 014998          292 GWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLT  345 (414)
Q Consensus       292 ~~y~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~~  345 (414)
                      ++|++. ..+...++....+.++.+++++|.+.|+.|.+++.+++++++++++.
T Consensus       236 ~~~~~~-~~~~~~~l~~~~~~v~~~~~~~~~~~F~~n~~~g~~~~~~~~~~~~~  288 (289)
T PLN02809        236 WPYYAG-LAAAAGHLAWQIQTVDLSSRADCNRKFVSNKWFGAIVFAGIVLGKLF  288 (289)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence            556643 33333344455666777889999999999999999999999988764

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.3e-46  Score=370.01  Aligned_cols=278  Identities=17%  Similarity=0.130  Sum_probs=223.1

Q ss_pred             hHHHHHhHhhhhHHHHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccC
Q 014998           63 YGRCYWELSKARLSMLVVATSGTGFALGS---GSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPS  139 (414)
Q Consensus        63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~---~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLps  139 (414)
                      ++|.|+|++||+|+++..+.++.|.+++.   ++.+++..+++.+++++++++++|++||++|+|+|++|+||++||||+
T Consensus         1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~s   80 (284)
T PRK12888          1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVT   80 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCC
Confidence            47899999999999999998888887764   456788888899999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchh-hhHhhhhcccccchhhhhccCCC
Q 014998          140 GRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVN-TWVGAIVGAIPPLLGWTAAVGHV  218 (414)
Q Consensus       140 G~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~n-v~vG~~~Galp~l~G~~A~~g~~  218 (414)
                      |++|++||+.+++++.++++.++ .++|+.++.++.++++. .++|+++||+++++ +++|. .+++++++||++++|++
T Consensus        81 G~is~~~a~~~~~~~~~~~l~l~-~~l~~~~~~l~~~~~~~-~~~Y~~~Kr~t~~~~~~lg~-~~~~~~l~g~~a~~g~~  157 (284)
T PRK12888         81 GAVSVRTAWTGALVALAVFLGAA-ALLNPLCLALAPLAVAP-LVVYPYAKRFTNFPHAILGL-AQAVGPVGAWIAVTGTW  157 (284)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH-HHHHHHhhcccchhhHHHHH-HHHHHHHHHHHHHcCCC
Confidence            99999999999987777666665 46899999998888876 78999999999996 55555 55799999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHH-HHHHHHHHHHHHHhhchhHHHHHH
Q 014998          219 SLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRN-CLYLVPLGYLAYDWGVTSGWFCLE  297 (414)
Q Consensus       219 ~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~-~l~lv~ls~l~~~~gl~~~~y~~~  297 (414)
                      ++.++++++..++|+.+||++++++|+|||+++|+||+|+++|. +++.+..... .+..+.+...++..++ ++.|++.
T Consensus       158 ~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~-~~a~~~~~~~~~~~~~ll~~~~~~~~~-~~~y~~~  235 (284)
T PRK12888        158 SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV-RAALWASRVAHVVTFALFVWFGLAVGF-GALWWIG  235 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc-hhHHHHHHHHHHHHHHHHHHHHHHhCC-cHHHHHH
Confidence            99999999999999999999999999999999999999999974 3333332222 2222222223344455 4566653


Q ss_pred             HHHHHHHHHHHHHHhhcCCcHHHHHHHHH-HhhHHHHHHHHHHHHHHhhc
Q 014998          298 SSLITLAISAAAFSFYRDRTTQKARKMFH-ASLLYLPVFMSGLLFHRLTD  346 (414)
Q Consensus       298 a~~~~~~il~~~~~~~~~~~~~~a~~~F~-~s~~~l~~~l~~~li~~~~~  346 (414)
                      .. +...++.+.+++.+.+|+++|.+.|+ .|.+.+.+++++++++.+.+
T Consensus       236 ~~-~~~~~l~~~~~~~~~~~~~~~~~~ff~~n~~ig~~~~~~~~~~~~~~  284 (284)
T PRK12888        236 LA-ITAGAFAYEHAIVSPTDLSRVNRAFFTANGFVGIALFGFALLDLLVR  284 (284)
T ss_pred             HH-HHHHHHHHHHHHcCccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence            33 33333444456777788899998976 66667777888888887653

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1e-46  Score=370.63  Aligned_cols=278  Identities=19%  Similarity=0.212  Sum_probs=233.5

Q ss_pred             hHHhHHHHHhHhhhhH---HHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCC
Q 014998           60 IRHYGRCYWELSKARL---SMLVVATSGTGFALGSGST-IDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRR  135 (414)
Q Consensus        60 ~~~~lk~yl~L~RP~~---~~~~~~~~~~G~llA~~~~-~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~R  135 (414)
                      +++++++|+|++||++   ..++.+++++|++++.++. +++...++++++++++++++|++|||+|+|+|++|+||++|
T Consensus         3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~R   82 (285)
T PRK12847          3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSLLPDISLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNR   82 (285)
T ss_pred             hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCccCCcHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCC
Confidence            3457899999887764   5567889999999986543 67877889999999999999999999999999999999999


Q ss_pred             CccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchh-hhHhhhhcccccchhhhhc
Q 014998          136 PLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVN-TWVGAIVGAIPPLLGWTAA  214 (414)
Q Consensus       136 PLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~n-v~vG~~~Galp~l~G~~A~  214 (414)
                      |+|+|++|++||+.++.++.++|+.+++ ++|+.++.++++++++ .++||++||+++++ +++|.. +++++++||.++
T Consensus        83 pl~sG~is~~~a~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~~~~-~~~Y~~~Kr~~~~~~~~~g~~-~~~~~l~~~~a~  159 (285)
T PRK12847         83 PLASGALSVKQALILLFILLLIALVILL-LLNKTTIYLSFIAVIL-IVLYPLMKRFFYWPQLFLGFT-FNMGILMAFAAV  159 (285)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHhccccccCCcccHHHHHHH-HHHHHHHHHHHH
Confidence            9999999999999999999999988875 6899999999999888 89999999999996 455554 469999999999


Q ss_pred             cCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHH
Q 014998          215 VGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWF  294 (414)
Q Consensus       215 ~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y  294 (414)
                      +|++++.++++++..++|+.+||++++++|+|||+++|+||+|+++|. +++.+....+.+....++++++..|+++ +|
T Consensus       160 ~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~  237 (285)
T PRK12847        160 QNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN-KTRKYILRLYIISLILWLILGIISSLHN-IF  237 (285)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHhcCcH-HH
Confidence            999999999999999999999999999999999999999999999984 4555555555565666677778888864 44


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014998          295 CLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHR  343 (414)
Q Consensus       295 ~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~  343 (414)
                      |....+ ...++.......+.+|+++|+|.|+.|.+++.+++++++++|
T Consensus       238 y~~~~~-~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~  285 (285)
T PRK12847        238 YLAILA-AAGIFYYQYKLLDFDNPANCMYAFKANHYVGLLLFLGAVLGR  285 (285)
T ss_pred             HHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHhHHHHHHHHHHHHhCC
Confidence            433222 233444445567778888999999999999999999988764

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=1.9e-46  Score=368.30  Aligned_cols=274  Identities=20%  Similarity=0.227  Sum_probs=229.4

Q ss_pred             HHHHhH---hhhhHHHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccC
Q 014998           65 RCYWEL---SKARLSMLVVATSGTGFALGSG--STIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPS  139 (414)
Q Consensus        65 k~yl~L---~RP~~~~~~~~~~~~G~llA~~--~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLps  139 (414)
                      ++|.|+   .||+.+.+..+++.+|+.++..  +.+++..+++++++++++++++|++|||+|+|+|++|+||++||+|+
T Consensus         2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~s   81 (281)
T TIGR01474         2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLAS   81 (281)
T ss_pred             hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCC
Confidence            456655   4789999999999999999864  34567667788899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchhhhHhhhhcccccchhhhhccCCCC
Q 014998          140 GRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVS  219 (414)
Q Consensus       140 G~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~  219 (414)
                      |++|++||+.++.+++++|+.+++ ..|+.++.++++++++ .++||.+||+++++.+++++.+++++++||.+++|+++
T Consensus        82 G~is~~~a~~~~~~~~~~~~~l~~-~l~~~~~~l~~~~~~~-~~~Y~~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~  159 (281)
T TIGR01474        82 GAVSVRQAILFLLVQLLVALGVLL-QLNPLTILLGVASLAL-VATYPFMKRITYWPQLVLGLAFGWGALMGWAAVTGDLS  159 (281)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH-HHHhchhcccccccHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            999999999999999999998875 6899999999999988 99999999999996444444557999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 014998          220 LNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESS  299 (414)
Q Consensus       220 ~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~  299 (414)
                      +..++++...++|+.+||++++++|+|||+++|+||+|+++|. +++......+.+.++.+++.++..+. +++|++...
T Consensus       160 ~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~~  237 (281)
T TIGR01474       160 TAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD-NTKPWLGGLYALMILLLALAGLIAGL-GPVYYLGLA  237 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh-hhHHHHHHHHHHHHHHHHHHHHHhCC-cHHHHHHHH
Confidence            9888899999999999999999999999999999999999984 44444444555545555555555565 466776555


Q ss_pred             HHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014998          300 LITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHR  343 (414)
Q Consensus       300 ~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~  343 (414)
                      +.+..+++.... .+++|+++|+++|+.|.+++++++++++++.
T Consensus       238 ~~~~~~~~~~~~-~~~~~~~~~~~~F~~~~~~~~~l~~~~~~~~  280 (281)
T TIGR01474       238 AAALLLIRQIAT-LDIRDPENCLKLFKANNYVGLLLFAGIALGW  280 (281)
T ss_pred             HHHHHHHHHHHH-hCCCCHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            556666666554 4677888999999999999999999999875

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.9e-46  Score=369.75  Aligned_cols=281  Identities=15%  Similarity=0.123  Sum_probs=228.7

Q ss_pred             hhHhHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCC
Q 014998           57 FSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRP  136 (414)
Q Consensus        57 ~~~~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RP  136 (414)
                      .++.+.++++|+||+||++.++..+++++|++++.++.+++..+++++++++++++++|++||++|+|+|++|+||++||
T Consensus         8 ~~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RP   87 (300)
T PRK13106          8 LNNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPPISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRP   87 (300)
T ss_pred             chhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCC
Confidence            34577889999999999999999999999999997777888888899999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccch-hhhHhhhhcccccchhhhhcc
Q 014998          137 LPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPV-NTWVGAIVGAIPPLLGWTAAV  215 (414)
Q Consensus       137 LpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~-nv~vG~~~Galp~l~G~~A~~  215 (414)
                      +|+|++|++||+.+.+++.+.+++++ .++|+.++.++.+++++ .++||++||++++ |+++|..+| +++++||.+++
T Consensus        88 l~sG~is~~~A~~~~~~~~~~~~~~~-~~ln~~~~~l~~~~~~~-~~~Y~~~KR~t~~~~~~lg~~~~-~~~~~G~~a~~  164 (300)
T PRK13106         88 LVTGAIKISEAKALITAGLILFFASA-YLVNRWALLLSPIVALI-AMSYPYMKRYTAFANYHLASIQG-LAVFSGAVAVL  164 (300)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH-HHHHhHHhcCCcchHHHHHHHHH-HHHHHHHHHHc
Confidence            99999999999999866555555544 47899999999888877 7899999999999 699999886 78999999987


Q ss_pred             CCC--------ChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHH-HHH
Q 014998          216 GHV--------SLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYL-AYD  286 (414)
Q Consensus       216 g~~--------~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l-~~~  286 (414)
                      |..        +..++++++..++|+.++|++|++||+|||++.|+||+|+++|  +++.+++.......+.+..+ .+.
T Consensus       165 g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G--~~a~~~~~~~~~~~v~l~~~~~~~  242 (300)
T PRK13106        165 GLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG--KWALTFAGLNQLFSVVLDLLGDLY  242 (300)
T ss_pred             CCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            743        2455778888999999999999999999999999999999986  55544433333333333333 345


Q ss_pred             hhchhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 014998          287 WGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTD  346 (414)
Q Consensus       287 ~gl~~~~y~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~~~  346 (414)
                      .++ ++.|++..++.+..++++.... +.+  ++|.+.|+.|.+.+.+++++++++.+.+
T Consensus       243 ~~l-g~~y~~~~~~~~~~l~~~~~~~-~~~--~~~~~~F~~n~~ig~~~~~~~~~~~~~~  298 (300)
T PRK13106        243 YGL-GPIAIAATILHGLIMAYAYYLA-SKK--GDFGRAFYYNIYSSIVLGLGIIIDVLLG  298 (300)
T ss_pred             hCC-cHHHHHHHHHHHHHHHHHHHHh-CCc--hHHHHHHHHccHHHHHHHHHHHHHHHHc
Confidence            566 4667654444555556554443 333  8899999999999999999999988765

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=4.7e-46  Score=365.37  Aligned_cols=277  Identities=21%  Similarity=0.167  Sum_probs=225.8

Q ss_pred             hHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998           63 YGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI  142 (414)
Q Consensus        63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I  142 (414)
                      ++|+|+||+||++..+..+++++|++++.++.+++..+++++++++++++++|++||++|+|+|++|+||++||+|+|++
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~i   80 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLI   80 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCc
Confidence            46899999999999999999999999987667888888899999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchh-hhHhhhhcccccchhhhhccCCCC--
Q 014998          143 SVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVN-TWVGAIVGAIPPLLGWTAAVGHVS--  219 (414)
Q Consensus       143 S~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~n-v~vG~~~Galp~l~G~~A~~g~~~--  219 (414)
                      |+++|+.+++++.++++.++. .+|+.+..++.++.++ .++|+++||+++++ +++|... ++++++||.+++|+++  
T Consensus        81 s~~~a~~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~~-~~~Y~~~Kr~~~~~~~~~g~~~-~~~~~~g~~a~~g~~~~~  157 (282)
T TIGR01475        81 SKKEARTMIILSLALFLSASY-FLNPLAFILSPLVLLV-LIIYPYTKRFTFLCHYVLGSTY-GLAPLAGWVAVIGTISFF  157 (282)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHhhHhccccccHHHHHHHH-HHHHHHHHHHHhCCccch
Confidence            999999999987766666554 6899998888888877 78999999999995 5566655 5899999999999888  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 014998          220 LNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESS  299 (414)
Q Consensus       220 ~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~  299 (414)
                      ..++++++..++|+.+||++++++|+|||+++|+||+|+++|. +++.+++..+....+.+.+++...+..++.|++..+
T Consensus       158 ~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~-~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~~~~  236 (282)
T TIGR01475       158 LVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI-KAALKIASLSHVITFILLLLVGFYVGNGYIALLALI  236 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch-HHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence            7888999999999999999999999999999999999999974 555555444343333334333333323466776555


Q ss_pred             HHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHH-HHHHHHHHHHh
Q 014998          300 LITLAISAAAFSFYRDRTTQKARKMFHASLLYLP-VFMSGLLFHRL  344 (414)
Q Consensus       300 ~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~-~~l~~~li~~~  344 (414)
                      +.+ .++...+++.+.+++++|++.|+.++.++. +++++++++.+
T Consensus       237 ~~~-~~l~~~~~~~~~~~~~~~~~~ff~~~~~l~~~~~~g~~~~~~  281 (282)
T TIGR01475       237 LIG-LILAYEHYIVDPGDQSKIQRAFFYANGFLSITFLIGVIIDVL  281 (282)
T ss_pred             HHH-HHHHHHHHHcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            555 445566777888889999998887777664 45567777654

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.3e-45  Score=361.84  Aligned_cols=279  Identities=14%  Similarity=0.115  Sum_probs=222.0

Q ss_pred             HhHHHHHhHhhhhHHHHHHHHHHHHHHHhc------CC---CCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCC
Q 014998           62 HYGRCYWELSKARLSMLVVATSGTGFALGS------GS---TIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRT  132 (414)
Q Consensus        62 ~~lk~yl~L~RP~~~~~~~~~~~~G~llA~------~~---~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT  132 (414)
                      +++|.|.|++|.+|+++.+..++.|+++|.      ++   .+++..+++..++.++++++||++||++|+|+|++|+||
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT   81 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRT   81 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCC
Confidence            358999999999999999999999999995      45   678988999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchh-hhHhhhhcccccchhh
Q 014998          133 MRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVN-TWVGAIVGAIPPLLGW  211 (414)
Q Consensus       133 ~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~n-v~vG~~~Galp~l~G~  211 (414)
                      ++||+|+|++|++||+.+++++.+++++++ .++|++++.++++++++ .++||++||+|+++ +++|... ++++++||
T Consensus        82 ~~RPLpsG~is~~~A~~~~~~~~~~~~~l~-~~ln~l~~~l~~~~~~~-~~iY~~~KR~t~~~~~vLGl~~-~~~~l~~~  158 (300)
T PRK12876         82 SSRVLPAKLLSINFSMLLLTLCSFLFLSLC-WLLNPLCFSLAVLSTLL-MIIYPYTKRVTFLCHWILGLVY-YLAILMNF  158 (300)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH-HHHHHhHhcCCchhHHHHHHHH-HHHHHHHH
Confidence            999999999999999999986555555544 57899999999999998 58999999999996 5566655 68999999


Q ss_pred             hhccCC-CCh----HHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHH--HHHHHHHHHHHH
Q 014998          212 TAAVGH-VSL----NGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALR--NCLYLVPLGYLA  284 (414)
Q Consensus       212 ~A~~g~-~~~----~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~--~~l~lv~ls~l~  284 (414)
                      .|+.++ +++    ..+++....++|..++|++|++||+|||++.|+||+|+++|  ++++..+..  +.+..+.+...+
T Consensus       159 ~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG--~~~a~~ia~~~~~l~~~~l~~~g  236 (300)
T PRK12876        159 FAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFG--EKKAIRIASANLIASAIAYLLIG  236 (300)
T ss_pred             HHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHC--chhHHHHHHHHHHHHHHHHHHHH
Confidence            998876 554    33445566677778999999999999999999999999997  444433222  223233333445


Q ss_pred             HHhhchhHHHHHHHHHHHHHH--HHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 014998          285 YDWGVTSGWFCLESSLITLAI--SAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTD  346 (414)
Q Consensus       285 ~~~gl~~~~y~~~a~~~~~~i--l~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~~~  346 (414)
                      +..+++ ++|++.+++....+  .+..+++.++++++.|.+.|+.|.+.+.+++++++....++
T Consensus       237 ~~~~l~-~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~N~~ig~~~~~~~~~~~~~~  299 (300)
T PRK12876        237 YFVSNK-KIFYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLGNIYLALSFFVNMIGLFLLR  299 (300)
T ss_pred             HHhhcc-HHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHhcCHHHHHHHHHHHHHHccC
Confidence            666775 45444344322222  34444566667788899999999999999999988877654

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=1.3e-42  Score=340.63  Aligned_cols=274  Identities=20%  Similarity=0.250  Sum_probs=239.9

Q ss_pred             hHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998           63 YGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI  142 (414)
Q Consensus        63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I  142 (414)
                      ++|.|+|++||+++....+++++|++++.+..+++..+++++++++++++++|++|||+|+|+|++|+  ++||+|+|++
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~--~~Rpl~sG~i   79 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKINK--PERPIPSGRI   79 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHHHHhhcccccccccC--CCCCcCCCcc
Confidence            47899999999999999999999999986555677778889999999999999999999999999998  7999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccch-hhhHhhhhcccccchhhhhccCCCCh
Q 014998          143 SVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPV-NTWVGAIVGAIPPLLGWTAAVGHVSL  220 (414)
Q Consensus       143 S~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~-nv~vG~~~Galp~l~G~~A~~g~~~~  220 (414)
                      |+++|+.++.++.++|+++++ ++|+.++.++++++++ .++|+. +||++++ |+++|...|. .+++||.++++  ..
T Consensus        80 s~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~~~~~~~-~~~Ys~~lKr~~~~~~~~vg~~~G~-~~~~g~~~~~~--~~  154 (279)
T PRK09573         80 SLKEAKIFSITLFIVGLILSI-FINIYAFLIALLNSIL-LYLYAKDLKKTGLIGNLIVAYLTGL-SFIFGGLAVFN--VL  154 (279)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHH-HHHHHHHHHcc--ch
Confidence            999999999999999998775 6899999999998887 789996 9999987 8999999985 47888888776  35


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 014998          221 NGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSL  300 (414)
Q Consensus       221 ~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~~  300 (414)
                      ..++++...++|+.++++.+.++|+|+|+++|+||+|+++|. +++.+++..+.+.++.++++++..|..++.|++.+++
T Consensus       155 ~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~  233 (279)
T PRK09573        155 RIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGI-KKSWYIAKILLILAIVLSPLPYFLGIFGIYYLIVVII  233 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667788889999999999999999999999999999999984 5666666667777777888888777556778877777


Q ss_pred             HHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 014998          301 ITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRL  344 (414)
Q Consensus       301 ~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~  344 (414)
                      .+..+++.++++++++++++|++.++.+..++.+-+++++++++
T Consensus       234 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~m~~g~~~~~~~~~  277 (279)
T PRK09573        234 CDILFIIAMLILLKNPSIEGASKASKYLKIIMILGLIAFLIGSL  277 (279)
T ss_pred             HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            88888999999999999999999999999988877777777764

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.3e-40  Score=325.84  Aligned_cols=269  Identities=20%  Similarity=0.198  Sum_probs=226.0

Q ss_pred             hHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998           63 YGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI  142 (414)
Q Consensus        63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I  142 (414)
                      ++|+|+|++||+++.+..+++++|++++.+...+....++++++++++++++|++||++|+|+|++|+  ++||+|+|++
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~~~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~--~~Rpl~~G~i   80 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSSPSLTGLAFAAVFLATGAGNAINDYFDREIDRINR--PDRPIPSGAV   80 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC--CCCCcCCCCc
Confidence            47899999999999999999999999986544344446788999999999999999999999999875  7999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccch-hhhHhhhhcccccchhhhhccCCCCh
Q 014998          143 SVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPV-NTWVGAIVGAIPPLLGWTAAVGHVSL  220 (414)
Q Consensus       143 S~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~-nv~vG~~~Galp~l~G~~A~~g~~~~  220 (414)
                      |++||+.++.++.++|+++++ ++|+.++.++++++++ .++|+. +||++++ |+.+|...|.. ++.|+.+.+.....
T Consensus        81 s~~~a~~~~~~l~~~g~~~~~-~l~~~~~~~~~~~~~~-~~~Yt~~lK~~~~~g~~~vg~~~g~~-~~~g~~~~~~~~~~  157 (276)
T PRK12882         81 SPRGALAFSILLFAAGVALAF-LLPPLCLAIALFNSLL-LVLYAETLKGTPGLGNASVAYLTGST-FLFGGAAVGTEGLL  157 (276)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHHHHHhcccchhHHHHHHHHHHH-HHHHHHHhcccchH
Confidence            999999999999999998875 6899999999888887 789997 9999877 89999988854 56666665543445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 014998          221 NGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSL  300 (414)
Q Consensus       221 ~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~~  300 (414)
                      ..+++++..++|+..+|+.++++|+|||+++|+||+|++.|. +++.+.+..+.+..+.++++++..+..++.|++.+++
T Consensus       158 ~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~  236 (276)
T PRK12882        158 ALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGV-RKALYVAAAFLLVAVAASPLPYLLSTFGLWYLVLVAP  236 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            667788888999999999999999999999999999999984 5666665556565666667666555555677777777


Q ss_pred             HHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHH
Q 014998          301 ITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMS  337 (414)
Q Consensus       301 ~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~  337 (414)
                      .++.+++..++..+++++++|++.|+.+.+.+.+.+.
T Consensus       237 ~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~g~~~~~  273 (276)
T PRK12882        237 ADLVMLAAAYRSLKKTDPTASQKLLKYGMFLALAAFI  273 (276)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            7778888888889889999999999999998776654

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=100.00  E-value=5.2e-43  Score=332.74  Aligned_cols=292  Identities=18%  Similarity=0.164  Sum_probs=242.2

Q ss_pred             CCCCCChhhHhHHhHHHHHhHhh---hhHHHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 014998           50 TGAAADPFSLIRHYGRCYWELSK---ARLSMLVVATSGTGFALGSG--STIDLAGLCWTCTGTMMVAASANSLNQLFEIS  124 (414)
Q Consensus        50 ~~~~~~~~~~~~~~lk~yl~L~R---P~~~~~~~~~~~~G~llA~~--~~~~~~~lll~~lg~~l~~aa~~~iND~~D~e  124 (414)
                      .++..+.....+++++.|.||+|   |..+++..+|+.++.+++.+  ..++...+.++.+|.++++++||+|||.+|+|
T Consensus        50 v~ssss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~mL~LFG~GAllMRgAGCtINDlwDkd  129 (353)
T KOG1381|consen   50 VPSSSSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIKMLALFGVGALLMRGAGCTINDLWDKD  129 (353)
T ss_pred             cCCchhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccchhHHHHHhcccHHHhccCCceehhhhhhh
Confidence            44445555556778999999985   88999999999999999874  34677778889999999999999999999999


Q ss_pred             ccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccch-hhhHhhhhc
Q 014998          125 NDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPV-NTWVGAIVG  203 (414)
Q Consensus       125 iD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~-nv~vG~~~G  203 (414)
                      +|++++||+.|||++|++|+++|+.|..+...+|+.++. ++|+.+..++...+.+ ++.||.+||+|++ ++++|..++
T Consensus       130 lD~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLl-qLn~ysi~lg~~sl~~-v~~ypl~kr~TY~pq~vLgltfn  207 (353)
T KOG1381|consen  130 LDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILL-QLNWYSIALGASSLAL-VITYPLMKRFTYWPQLVLGLTFN  207 (353)
T ss_pred             hhhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHH-hccHHHHHhccccccc-EEEeehhhhcchhHHHHHhhhcc
Confidence            999999999999999999999999999999999999885 8999999999998888 8899999999999 588999885


Q ss_pred             ccccchhhhhccCCCChHH-HHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHH-HHHHHHH
Q 014998          204 AIPPLLGWTAAVGHVSLNG-MILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNC-LYLVPLG  281 (414)
Q Consensus       204 alp~l~G~~A~~g~~~~~~-~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~-l~lv~ls  281 (414)
                       ++.+.||.|..|...+.. +.+++...+|++.+|++|||||++||.++|+|+.+.++|  .+|+.+...+. ..+..++
T Consensus       208 -wGAllGw~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG--~nTK~wl~gf~a~~ia~La  284 (353)
T KOG1381|consen  208 -WGALLGWCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFG--DNTKPWLSGFGAAQIASLA  284 (353)
T ss_pred             -hhhhhcchhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcC--CCCchHHhhhhHHHHHHHH
Confidence             999999999999887643 558888899999999999999999999999999999986  67766644433 3344455


Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Q 014998          282 YLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQ  348 (414)
Q Consensus       282 ~l~~~~gl~~~~y~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~~~~~  348 (414)
                      ..+...|.+ +.||.. +.....-+.....-++.+++++|.|.|+.|.+.+.+++.++.++.+++..
T Consensus       285 ~aG~~s~q~-~pyy~~-lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli~~~~i~~d~llk~~  349 (353)
T KOG1381|consen  285 AAGIASDQT-WPYYAA-LGAVAARLGSQIYKVDIDNPSDCWKKFKSNSNTGLILFSGIVLDTLLKSF  349 (353)
T ss_pred             HhhhccCCC-chHHHH-HHHHHHHHHhheeeeecCChHHHHHHHHhcCcchHHHHHHHHHHHHHHHh
Confidence            666677775 677753 32222222222222456789999999999999999999999999887743

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=5.4e-40  Score=323.53  Aligned_cols=278  Identities=22%  Similarity=0.217  Sum_probs=232.4

Q ss_pred             HHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCC
Q 014998           61 RHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSG  140 (414)
Q Consensus        61 ~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG  140 (414)
                      .+.++.++|+.||.++++...++.+|..++.++..++...++++++++++++++|++||++|+|+|++|+||++||+|+|
T Consensus        10 ~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG   89 (289)
T COG0382          10 LKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSG   89 (289)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCC
Confidence            35567777788899999999999999999875445577888999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccch-hhhHhhhhcccccchhhhhccCCCC
Q 014998          141 RISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPV-NTWVGAIVGAIPPLLGWTAAVGHVS  219 (414)
Q Consensus       141 ~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~-nv~vG~~~Galp~l~G~~A~~g~~~  219 (414)
                      ++|+++|+.+.+++.++++++++ ++|+.++.++++++++ .+.|+.+||.+++ |+.+|...+ +++++||.++.+++.
T Consensus        90 ~vS~~~a~~~~~~~~~~~~~~a~-~l~~~~~~l~~~~~~l-~~~Y~~~Kr~~~~~~~~lg~~~~-~~~~~g~~a~~~~~~  166 (289)
T COG0382          90 RVSVKEALLLAILLLLLGLALAL-LLNPLAFLLSLAALVL-ALAYPFLKRFTFLPQLVLGLAFG-LGALAGAAAVGGSLP  166 (289)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHHHhhcCCchHHHHHHHHHH-HHHHHHHHHHhCccc
Confidence            99999999999999999998885 7899999999888887 8899779999999 789999986 899999999999888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 014998          220 LNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESS  299 (414)
Q Consensus       220 ~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~  299 (414)
                      ...+++++..++|+.++|+.++++|+|+|++.|+||+|+.+|. +++..+...+.+..+.+.++++..+....+|++...
T Consensus       167 ~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~-~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (289)
T COG0382         167 LLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGI-KKALALALLLLLASALLVLLGLLAGLLGLIYLLGLL  245 (289)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            8999999999999999999999999999999999999999974 344444444445556666677777775445655444


Q ss_pred             HHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014998          300 LITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHR  343 (414)
Q Consensus       300 ~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~  343 (414)
                      .....+.+..+. .+.++++.+.+.|+.+...+.+++++.+++.
T Consensus       246 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (289)
T COG0382         246 VAALLLLYQILI-VDVRDPPACFALFDVNLLLGLLLFIGLILAV  288 (289)
T ss_pred             HHHHHHHHHHHH-hcccChHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            445555554443 4445788899999999999998888877653

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.5e-39  Score=318.35  Aligned_cols=256  Identities=21%  Similarity=0.234  Sum_probs=212.1

Q ss_pred             HHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCC
Q 014998           61 RHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSG  140 (414)
Q Consensus        61 ~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG  140 (414)
                      +.++++|+|++||+++....+++++|++++.+. .++..+++++++++++++++|++||++|+|+|++| | ++||+++|
T Consensus         1 ~~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~-~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r-~~Rpl~~G   77 (279)
T PRK12884          1 RTKMKAYLELLRPEHGLMAGIAVVLGAIIALGG-LPLDEALLGFLTAFFASGSANALNDYFDYEVDRIN-R-PDRPIPSG   77 (279)
T ss_pred             ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc-C-CCCCCCCC
Confidence            357899999999999999999999999998654 33455678889999999999999999999999999 6 59999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccch-hhhHhhhhcccccchhhhhccCCC
Q 014998          141 RISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPV-NTWVGAIVGAIPPLLGWTAAVGHV  218 (414)
Q Consensus       141 ~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~-nv~vG~~~Galp~l~G~~A~~g~~  218 (414)
                      ++|+++|+.++.++.+++++++. .+|+.+..++++++++ ++.||. +||++++ |+++|...| +|++.||.++++..
T Consensus        78 ~is~~~a~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~-~~~Ys~~lK~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~  154 (279)
T PRK12884         78 RISRREALLLAILLFILGLIAAY-LISPLAFLVVILVSVL-GILYNWKLKEYGLIGNLYVAFLTG-MTFIFGGIAVGELN  154 (279)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHHHhhccccchhHHHHHHHHH-HHHHHHHHHhCCCc
Confidence            99999999999999999988775 6799998888888776 899998 8999976 688888764 88899988876543


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 014998          219 SLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLES  298 (414)
Q Consensus       219 ~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a  298 (414)
                       ...++++...++|+.+|++.++++|+|||+++|+||+|+.+|. +++.+....+......++.+++..|..+++|++..
T Consensus       155 -~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~  232 (279)
T PRK12884        155 -EAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE-KIAGRIAAALFILAVLLSPLPYLFGIFNILYLAPV  232 (279)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence             3778888889999999999999999999999999999999984 55555444444444445555666666567777666


Q ss_pred             HHHHHHHHHHHHHhhcCCcHHHHHHH
Q 014998          299 SLITLAISAAAFSFYRDRTTQKARKM  324 (414)
Q Consensus       299 ~~~~~~il~~~~~~~~~~~~~~a~~~  324 (414)
                      .+.+..+++..++++++++++++++.
T Consensus       233 ~~~~~~~l~~~~~~~~~~~~~~~~~~  258 (279)
T PRK12884        233 LVADLIFLYSAYSLLRSQDRETIRKV  258 (279)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            66667777787888888888888776

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=6.4e-37  Score=299.86  Aligned_cols=263  Identities=19%  Similarity=0.241  Sum_probs=213.3

Q ss_pred             hHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998           63 YGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI  142 (414)
Q Consensus        63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I  142 (414)
                      ++|+|+|++||+++.++.++++.|++++.++.+++..+++.+++.++.++++|++||++|+|+|++|+  ++||+|+|++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~i   79 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPPIKTLILIFLVVYLGCSGGNTINDYFDYEIDKINR--PNRPLPRGAM   79 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhHHHhhhhHhccccCC--CCCCCCCCcc
Confidence            46899999999999999999999999986554556666777889999999999999999999999864  7999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccc-hhhhHhhhhcccccchhhhhccCCCCh
Q 014998          143 SVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHP-VNTWVGAIVGAIPPLLGWTAAVGHVSL  220 (414)
Q Consensus       143 S~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~-~nv~vG~~~Galp~l~G~~A~~g~~~~  220 (414)
                      |+++|+.++.++.++|+++++ ..|+.++.+++++.++ .++|+. +||++. .|+++|.+.|++| +.|+.++ +.+++
T Consensus        80 s~~~a~~~~~~l~~~g~~l~~-~~~~~~~~~~~~~~~~-~~~Y~~~~k~~~~lg~~~vg~~~g~~~-~~g~~a~-~~~~~  155 (277)
T PRK12883         80 SRKAALYYSLLLFAVGLALAY-LINIEAFLFALGAYVL-MFLYAWKLKPLPFIGNVVVALLTGATP-IYGAIAV-GRIGL  155 (277)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhhcccCCcchhhHHHHHHHHHHH-HHHHHHh-ccccH
Confidence            999999999999999988765 6899999888888766 899998 999986 4899999998776 6777765 66777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 014998          221 NGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSL  300 (414)
Q Consensus       221 ~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~~  300 (414)
                      ..++. ...++|+.++++.+.++|+|+|+++|+||+|+.+|. +++.+++..+.+.++..+++++..+. ++.|+. ...
T Consensus       156 ~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~-~~a~~~~~~~~~~~~~~~~l~~~~~~-~~~y~~-~~~  231 (277)
T PRK12883        156 AGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK-KRAAYIGAIFGVLTVIASFLPVKAGI-GLGYLP-III  231 (277)
T ss_pred             HHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcH-HHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHH-HHH
Confidence            76554 446889999998899999999999999999999984 55666655566556666677777776 455554 344


Q ss_pred             HHHHHHHHHHHhhcCCcHHHH---HHHHHHhhHHHHHH
Q 014998          301 ITLAISAAAFSFYRDRTTQKA---RKMFHASLLYLPVF  335 (414)
Q Consensus       301 ~~~~il~~~~~~~~~~~~~~a---~~~F~~s~~~l~~~  335 (414)
                      .++.+++.++++++.++++++   ++.|+.+...+.+-
T Consensus       232 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (277)
T PRK12883        232 VDAIILYAAYLVLRNPDRETAHKGQKLLKIAIFLAVIS  269 (277)
T ss_pred             HHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHH
Confidence            677778888888887777665   67788777755443

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.4e-36  Score=296.31  Aligned_cols=278  Identities=12%  Similarity=0.124  Sum_probs=204.1

Q ss_pred             HHhHHHHHhHhhhhHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccC-CC------
Q 014998           61 RHYGRCYWELSKARLSMLVVATSGTGFALGS--GSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKM-KR------  131 (414)
Q Consensus        61 ~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~--~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~-~R------  131 (414)
                      +.++++|++++||+...+...++.+|.++|.  ++.+++..+++++++++++.+++|++|||+|+|+|++| +|      
T Consensus         2 ~~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~   81 (297)
T PRK12871          2 KETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYW   81 (297)
T ss_pred             cchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccc
Confidence            3568999999999988877777778988873  34577766665667777777889999999999999853 44      


Q ss_pred             --CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCcccch--hhhHhhhhcc
Q 014998          132 --TMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANM---LTAGLAASNLILYAFVYTPLKQIHPV--NTWVGAIVGA  204 (414)
Q Consensus       132 --T~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~---~~~~l~l~~l~ly~~iYt~lKr~t~~--nv~vG~~~Ga  204 (414)
                        |++||+++|++|++||+.+++++.++|++++....++   ..+.+++.+.++ ++.|+..||.+.+  +..+|.+.++
T Consensus        82 ~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~-~~~Y~~~kr~~~~p~~~l~G~~~~~  160 (297)
T PRK12871         82 RPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGI-EAFYQVKKRNQKYPVAQLLGRTDFT  160 (297)
T ss_pred             cCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccccccHHHHHHHHHHH
Confidence              3799999999999999999999999998877533332   333444444444 5667766665444  3456765557


Q ss_pred             cccchhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 014998          205 IPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLA  284 (414)
Q Consensus       205 lp~l~G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~  284 (414)
                      +++++||. ++|.++...++++...++|+.+||++++++|+|||+++|+||+|+.+|. +++.+++..+....+ +..++
T Consensus       161 ~~~~~g~~-~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~-~~t~~~i~~~~~l~~-l~~~~  237 (297)
T PRK12871        161 LFPAAGYL-CYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM-KGTMYWVTGFTALHF-LAAIF  237 (297)
T ss_pred             HHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech-HHHHHHHHHHHHHHH-HHHHH
Confidence            88888875 5788888999999999999999999999999999999999999999974 445544433333222 23334


Q ss_pred             HHhhchhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014998          285 YDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHR  343 (414)
Q Consensus       285 ~~~gl~~~~y~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~  343 (414)
                      +..+.+ +.++....++...+....+++++.++++.|.|.|+.=..|.......+++|.
T Consensus       238 ~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  295 (297)
T PRK12871        238 FLRELG-PIALYGFLAGFVLLAGANLYLWKEKSQDAGMKILPLYHASLVIYAVSIILDF  295 (297)
T ss_pred             HHHHhh-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            444554 3322222233334455566778889999999999988888877777776664

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=9.2e-35  Score=295.23  Aligned_cols=262  Identities=17%  Similarity=0.157  Sum_probs=204.2

Q ss_pred             hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHH------HHHHHHHHHHHHHHHHHHhhccccccccccCCCCC
Q 014998           60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLA------GLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTM  133 (414)
Q Consensus        60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~------~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~  133 (414)
                      -++++|.|+|++||+++...++++++|++.. + .+++.      .++++++++.++++++|++|||+|+|+|++|+  +
T Consensus        81 ~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g-~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~--~  156 (375)
T PLN00012         81 ETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-G-NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINE--P  156 (375)
T ss_pred             chHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-C-CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCC--C
Confidence            4567899999999999999999999999853 3 34443      24667888899999999999999999999998  7


Q ss_pred             CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHhc----CCCcccch-hhhHhhhh
Q 014998          134 RRPLPSGRISVRHAVTWASSVGVAGTALLAWK------ANMLTAGLAASNLILYAFVYT----PLKQIHPV-NTWVGAIV  202 (414)
Q Consensus       134 ~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~------~n~~~~~l~l~~l~ly~~iYt----~lKr~t~~-nv~vG~~~  202 (414)
                      +||+++|++|+++++.++.++.++++.++.++      .|+..+.++++++++ +++||    .+||++++ |+.+|+..
T Consensus       157 ~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l-~~~YS~pPl~lKr~~~~G~v~lG~~~  235 (375)
T PLN00012        157 YRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLL-SYIYSAPPLKLKQNGWIGNYALGASY  235 (375)
T ss_pred             CCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-hhhhcCCchhhhHhccHhHHHHHHHH
Confidence            89999999999999997776666666555432      256678888888887 88998    38999987 88999999


Q ss_pred             cccccchhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHH
Q 014998          203 GAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGY  282 (414)
Q Consensus       203 Galp~l~G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~  282 (414)
                      +++|+.+|+ +++|.+++..+++++..++|....++.+.++|+|+|+++|+||+|+++|. +++++. ..+.+.+..++.
T Consensus       236 ~~lp~~~g~-a~~g~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~-~~a~~l-~~~~l~l~~l~~  312 (375)
T PLN00012        236 ISLPWWAGQ-ALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV-ETAKWI-CVGSIDITQLSV  312 (375)
T ss_pred             HHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeech-HHHHHH-HHHHHHHHHHHH
Confidence            888888887 66788999999999999999999999999999999999999999999984 444444 345566666666


Q ss_pred             HHHHhhchhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhH
Q 014998          283 LAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLL  330 (414)
Q Consensus       283 l~~~~gl~~~~y~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~  330 (414)
                      +++..+.+.+.|.....++.+..++..++... +|+++....|+.+..
T Consensus       313 ~~~l~~~~~~~y~~~~~~l~l~~l~~~~~~~~-~~p~~~~~~~~~~a~  359 (375)
T PLN00012        313 AGYLLAIGKPYYALALLGLIIPQIFFQFKYFL-PDPVKNDVKYQASAQ  359 (375)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence            67776665444433344444555555555433 377777777775543

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=2.1e-34  Score=287.22  Aligned_cols=276  Identities=17%  Similarity=0.101  Sum_probs=204.9

Q ss_pred             hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHH------HHHHHHHHHHHHHHHHHhhccccccccccCCCCC
Q 014998           60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAG------LCWTCTGTMMVAASANSLNQLFEISNDAKMKRTM  133 (414)
Q Consensus        60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~------lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~  133 (414)
                      .+++++.|++++||+++...+++.+.|++.+.  .+++..      ++.+++++.+.++++|++|||+|+|+|++|+  +
T Consensus        23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~--~   98 (314)
T PRK07566         23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSSG--AFGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINE--P   98 (314)
T ss_pred             cchHHHHHHHHhCCcchHHHHHHHHHHHHHcC--CCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCC--C
Confidence            46778999999999999999999888888653  233322      3446677888999999999999999999987  6


Q ss_pred             CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc----CCCcccch-hhhHhhhhcccccc
Q 014998          134 RRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT----PLKQIHPV-NTWVGAIVGAIPPL  208 (414)
Q Consensus       134 ~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt----~lKr~t~~-nv~vG~~~Galp~l  208 (414)
                      +||+++|++|+++|+.++.++.++|++++. .+|+.+..++++++++ .++||    ++||++++ |+++|..+|++|++
T Consensus        99 ~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~l~~~~~-~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~  176 (314)
T PRK07566         99 YRPIPSGAISLRWVLYLIAVLTVLGLAVAY-LLGPWVFLAALLGLFL-AWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWW  176 (314)
T ss_pred             CCCCCCceeCHHHHHHHHHHHHHHHHHHHH-HHChHHHHHHHHHHHH-HHHhcCCccccccccchhhHHHHHHHHHHHHH
Confidence            899999999999999999999999988775 6799898898888887 88999    49999976 89999999889999


Q ss_pred             hhhhhccC-CCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014998          209 LGWTAAVG-HVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDW  287 (414)
Q Consensus       209 ~G~~A~~g-~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~  287 (414)
                      +|+.+.++ .+++..+++++..++|....+..++++|+|+|+++|+||+|+++|.  +++.......+.+..+..+.+..
T Consensus       177 ~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~--~~a~~l~~~l~~~~~~~~~~~~~  254 (314)
T PRK07566        177 AGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE--KNAARIACVVIDLFQLAVIALLL  254 (314)
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988874 6788888888888899999999999999999999999999999974  43333222222222222222222


Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014998          288 GVTSGWFCLESSLITLAISAAAFSFYRD-RTTQKARKMFHASLLYLPVFMSGLLFHR  343 (414)
Q Consensus       288 gl~~~~y~~~a~~~~~~il~~~~~~~~~-~~~~~a~~~F~~s~~~l~~~l~~~li~~  343 (414)
                      .....+|.....+..+.......+..++ ++.+.+.+.|..+.+...+++.++++..
T Consensus       255 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  311 (314)
T PRK07566        255 AWGQPLYAAIVGLLLIPQITLQDRLLRDPLERDVWYNASAQPFYVLGMLVTALAIRH  311 (314)
T ss_pred             HHhchHHHHHHHHHHHHHHHHHHHHhhChhhcChhhhhhhhHHHHHHHHHHHHHhcc
Confidence            2211233222222333333344444443 3345566777777777777777776654

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=1.9e-31  Score=262.90  Aligned_cols=205  Identities=13%  Similarity=0.045  Sum_probs=175.0

Q ss_pred             hHHHHHhHhhhhHHHHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHHHHhhccccc--cccccCCCCCCCCccC
Q 014998           63 YGRCYWELSKARLSMLVVATSGTGFALGSG-STIDLAGLCWTCTGTMMVAASANSLNQLFEI--SNDAKMKRTMRRPLPS  139 (414)
Q Consensus        63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~~-~~~~~~~lll~~lg~~l~~aa~~~iND~~D~--eiD~~~~RT~~RPLps  139 (414)
                      ++|.|+|++||+++....+++++|.+++.. +.+++..+++++++++++++++|.+|||+|+  |+|+++.|+++||+++
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~   81 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGR   81 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccC
Confidence            468999999999999999999999999853 4578888889999999999999999999998  7899999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHhcC----CCcccchhhhHhhhhcccccchhhh
Q 014998          140 GRISVRHAVTWASSVGVAGTALLAW---KANMLTAGLAASNLILYAFVYTP----LKQIHPVNTWVGAIVGAIPPLLGWT  212 (414)
Q Consensus       140 G~IS~~~Al~~~~~l~~~gl~ll~~---~~n~~~~~l~l~~l~ly~~iYt~----lKr~t~~nv~vG~~~Galp~l~G~~  212 (414)
                      |++|+++++.++.++.++++++...   ..++..+.++++++++ .+.||.    +|++...++.+|..+|.+.++++++
T Consensus        82 G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~~~  160 (293)
T PRK06080         82 GGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAA-AILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYY  160 (293)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-hhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888777766544332   2477778888888777 789986    3444455889999999888888888


Q ss_pred             hccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHH
Q 014998          213 AAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALV  269 (414)
Q Consensus       213 A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~  269 (414)
                      ..++.+++..+++++..++|+..+++.++++|+|+|+++|+||+|+++|. +++.+.
T Consensus       161 ~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~-~~a~~~  216 (293)
T PRK06080        161 LQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGD-KNARRL  216 (293)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECc-HhHHHH
Confidence            88888999999999999999999999999999999999999999999984 443333

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=1.9e-31  Score=267.38  Aligned_cols=248  Identities=21%  Similarity=0.242  Sum_probs=177.9

Q ss_pred             hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCC-CcHHH----HHHHHHHHHHHHHHHHHhhccccccccccCCCCCC
Q 014998           60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSGST-IDLAG----LCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMR  134 (414)
Q Consensus        60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~-~~~~~----lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~  134 (414)
                      +++++|+|+|++||++++ .++++++|.++|.++. +++..    +..+++++.++++++|++|||+|+|+|++|+||  
T Consensus         8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rt--   84 (331)
T PRK12392          8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPT--   84 (331)
T ss_pred             hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCC--
Confidence            667789999999998777 6667778888886432 23221    223345556667889999999999999999976  


Q ss_pred             CCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHH-------HH-HHHHHHHHHHHHHHhc---C-CCcccch-hhhHhhh
Q 014998          135 RPLPSGRISVRHAVTWASSVGVAGTALLAWKANM-------LT-AGLAASNLILYAFVYT---P-LKQIHPV-NTWVGAI  201 (414)
Q Consensus       135 RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~-------~~-~~l~l~~l~ly~~iYt---~-lKr~t~~-nv~vG~~  201 (414)
                      ||+++|++|+++|+.+++++.+++++++. +++.       .. +..+++++++ +++||   + +||.++. +..+|..
T Consensus        85 Rpl~~G~is~~~al~~~~~l~~la~~lg~-~L~~~~~~~~~~~il~~~~~~l~l-~~~YS~~P~~lKr~~~~g~~~vGl~  162 (331)
T PRK12392         85 RPIPSGRLSEKEALWNSIIVLLLAIGLGV-WLGLHIGGERGMVIISSILAGLFV-AYIYSAPPLKLKKNILTSAPAVGFS  162 (331)
T ss_pred             CCCCcCCcCHHHHHHHHHHHHHHHHHHHH-HHHhccccchhHHHHHHHHHHHHH-hhhhcCCchhhhccchhHHHHHHHH
Confidence            99999999999999999999998887765 3332       11 2334555666 78996   3 8998765 6788998


Q ss_pred             hcccccchhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHH-HHHHHH
Q 014998          202 VGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNC-LYLVPL  280 (414)
Q Consensus       202 ~Galp~l~G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~-l~lv~l  280 (414)
                      ++ +.+++++.+..+++++..+++++..++|+.+.++.++++|+|+|++.|+||+|+.+|. +++.++...+. +..+.+
T Consensus       163 ~~-~~~~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~-~~a~~i~~~~~~~~~~~~  240 (331)
T PRK12392        163 YG-FITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA-KNTFLVSFIIIDLVFAVF  240 (331)
T ss_pred             HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH-hhHHHHHHHHHHHHHHHH
Confidence            87 5556677777788888888889999999999999999999999999999999999984 44444433333 233333


Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 014998          281 GYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDR  316 (414)
Q Consensus       281 s~l~~~~gl~~~~y~~~a~~~~~~il~~~~~~~~~~  316 (414)
                      ...++.++.+ +.|++..+++ ...++...+++++|
T Consensus       241 ~~~~~~~~~~-~~~~~~~~~~-~~~~~~q~~l~r~p  274 (331)
T PRK12392        241 AWLAWSWGFT-VLMYFILVGL-VLNIVIQIQLYRDP  274 (331)
T ss_pred             HHHHHHhccc-HHHHHHHHHH-HHHHHHHHHHHhCh
Confidence            3445666764 4444333322 23334445555554

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=1.3e-30  Score=259.07  Aligned_cols=197  Identities=19%  Similarity=0.123  Sum_probs=168.3

Q ss_pred             hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHH------HHHHHHHHHHHHHHHHHhhccccccccccCCCCC
Q 014998           60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAG------LCWTCTGTMMVAASANSLNQLFEISNDAKMKRTM  133 (414)
Q Consensus        60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~------lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~  133 (414)
                      .+.++|.|+|++||+++..+++++++|++.+.  .+++..      +++++++++++++++|++|||+|+|+|++|+  +
T Consensus        12 ~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~--~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~--~   87 (306)
T TIGR02056        12 ETNIWKIRLQLMKPITWIPLIWGVVCGAAASG--NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINE--P   87 (306)
T ss_pred             chhHHHHHHHHcChHhhHHHHHHHHHHHHHcC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC--C
Confidence            56678999999999999999999999988642  344432      3455678899999999999999999999998  4


Q ss_pred             CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHhc----CCCcccch-hhhHhhhh
Q 014998          134 RRPLPSGRISVRHAVTWASSVGVAGTALLAWKA------NMLTAGLAASNLILYAFVYT----PLKQIHPV-NTWVGAIV  202 (414)
Q Consensus       134 ~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~------n~~~~~l~l~~l~ly~~iYt----~lKr~t~~-nv~vG~~~  202 (414)
                      +||+++|++|+++++.+++++.+++++++....      |+..+.++++++++ +++||    ++||++++ ++.+|+..
T Consensus        88 ~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~-~~~Yt~gP~~lk~~g~~G~i~vg~~~  166 (306)
T TIGR02056        88 YRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFI-AFIYSAPPLKLKQNGWLGNFALGASY  166 (306)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH-HHHHcCChhhhhhcccHHHHHHHHHH
Confidence            899999999999999999988888887765321      36677888888887 89999    38999866 88899988


Q ss_pred             cccccchhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccch
Q 014998          203 GAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADAS  262 (414)
Q Consensus       203 Galp~l~G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~  262 (414)
                      +.+|+.+|+ +++|++++..+++++..++|....++.+.++|+|+|+++|+||+|+++|.
T Consensus       167 ~~~~~~~~~-a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~  225 (306)
T TIGR02056       167 IALPWWAGH-ALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGI  225 (306)
T ss_pred             HHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcCh
Confidence            878877776 55788999999999999999999999999999999999999999999974

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.97  E-value=2.6e-30  Score=253.91  Aligned_cols=199  Identities=18%  Similarity=0.137  Sum_probs=165.6

Q ss_pred             HHHHhHhhhhHHHHHHHHHHHHHHHhc--CCC-CcHHHHHH-HHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCC
Q 014998           65 RCYWELSKARLSMLVVATSGTGFALGS--GST-IDLAGLCW-TCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSG  140 (414)
Q Consensus        65 k~yl~L~RP~~~~~~~~~~~~G~llA~--~~~-~~~~~lll-~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG  140 (414)
                      |+|+|++||+++...++++++|.+++.  .+. .++...++ +++++.+.++++|++|||+|+|+|++|+  ++||+++|
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~--~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINE--PQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCC--CCCCCCCC
Confidence            468999999999999999999998873  222 45554444 6779999999999999999999999998  79999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC----CCcccch-hhhHhhhhcccccchhhhhcc
Q 014998          141 RISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP----LKQIHPV-NTWVGAIVGAIPPLLGWTAAV  215 (414)
Q Consensus       141 ~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~----lKr~t~~-nv~vG~~~Galp~l~G~~A~~  215 (414)
                      ++|++++..++.++..++++++....++....++++++++ ++.||.    +||++++ ++.+|...+.+|+..|+.+. 
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~-~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~-  156 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVL-AVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIF-  156 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHh-
Confidence            9999999999999999998887643344336777777777 889994    9999866 78888887778888887665 


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHH
Q 014998          216 GHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTAL  268 (414)
Q Consensus       216 g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~  268 (414)
                      +.+++..+++++...+|....+..+.++|+|+|+++|+||+|+++|. +++.+
T Consensus       157 ~~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~-~~a~~  208 (283)
T TIGR01476       157 APLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV-KRAAI  208 (283)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcH-HHHHH
Confidence            56788888888888899999999999999999999999999999984 44433

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=99.97  E-value=1.8e-29  Score=251.09  Aligned_cols=203  Identities=16%  Similarity=0.125  Sum_probs=163.7

Q ss_pred             ChhhHhHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHHHHHHHH----hhccccccccc
Q 014998           55 DPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGST---IDLAGLCWTCTGTMMVAASANS----LNQLFEISNDA  127 (414)
Q Consensus        55 ~~~~~~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~---~~~~~lll~~lg~~l~~aa~~~----iND~~D~eiD~  127 (414)
                      .+.+..++.+++|+|++|||+.+...++...+++++....   ++.. .++..+++++.+.++|+    +||++|+|+|+
T Consensus         4 ~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~-~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~   82 (308)
T PRK12887          4 NPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALA-NLGLLLGAWIACLCGNVYIVGLNQLTDIEIDR   82 (308)
T ss_pred             chhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Confidence            3455567788999999999999999999988887764222   2222 45677788888888898    99999999999


Q ss_pred             cCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC----CCcccchh-hhHhhhh
Q 014998          128 KMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP----LKQIHPVN-TWVGAIV  202 (414)
Q Consensus       128 ~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~----lKr~t~~n-v~vG~~~  202 (414)
                      +|+  |+||+++|++|+++++.+.++++++|+++++ +.|+..+.+++++.++ ++.||.    +||++.+. +.+....
T Consensus        83 ink--p~rPiasG~ls~~~a~~~~~~~~~lal~la~-~~~~~~~~~~~~~~~l-g~~Ys~pP~rlKr~~~~~~~~i~~~~  158 (308)
T PRK12887         83 INK--PHLPLAAGEFSRRQGQRIVIITGILALILAA-LLGPWLLITVGISLLI-GTAYSLPPIRLKRFPLLAALCIFTVR  158 (308)
T ss_pred             cCC--CCCCcCCcccCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHcCCchhhcccchhHHHHHHHHH
Confidence            998  8999999999999999999999999998875 6899988888888888 899994    99999884 5444444


Q ss_pred             cccccch---hhhh---ccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccch
Q 014998          203 GAIPPLL---GWTA---AVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADAS  262 (414)
Q Consensus       203 Galp~l~---G~~A---~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~  262 (414)
                      |.+..++   .+.+   ..+.++...+++++..++|+.+.++.++++|+|+|++.|+||+|+.+|.
T Consensus       159 g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~  224 (308)
T PRK12887        159 GVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGK  224 (308)
T ss_pred             HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhH
Confidence            4222222   1111   2234667778888889999999999999999999999999999999973

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=1.7e-28  Score=242.93  Aligned_cols=199  Identities=14%  Similarity=0.075  Sum_probs=171.7

Q ss_pred             HhHHHHHhHhhhhHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHhhcccc--ccccccCCCC--CCC
Q 014998           62 HYGRCYWELSKARLSMLVVATSGTGFALGS--GSTIDLAGLCWTCTGTMMVAASANSLNQLFE--ISNDAKMKRT--MRR  135 (414)
Q Consensus        62 ~~lk~yl~L~RP~~~~~~~~~~~~G~llA~--~~~~~~~~lll~~lg~~l~~aa~~~iND~~D--~eiD~~~~RT--~~R  135 (414)
                      +++|.|++.+||++..+...+++.|..++.  .+.+++...++++++++++++++|++|||+|  +|.|++ +||  ++|
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~-~rt~~~~r   80 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHH-ETTGYRQH   80 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccc-cccCCCCC
Confidence            478999999999999999999999998885  2578999999999999999999999999999  566665 677  789


Q ss_pred             CccCCCCCHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHhc---C-CCcccchhhhHhhhhcccccc
Q 014998          136 PLPSGRISVRHAVTWASSVGVAGTALLAW---KANMLTAGLAASNLILYAFVYT---P-LKQIHPVNTWVGAIVGAIPPL  208 (414)
Q Consensus       136 PLpsG~IS~~~Al~~~~~l~~~gl~ll~~---~~n~~~~~l~l~~l~ly~~iYt---~-lKr~t~~nv~vG~~~Galp~l  208 (414)
                      |+++|++|++|++.++.++.++++.+...   ..++....+++++++. ++.||   . +|++...++.++..+|.+.++
T Consensus        81 ~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~-~~~Yt~~P~~lky~glGe~~v~~~~g~~~vl  159 (296)
T PRK05951         81 PIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFL-WTCYMGPPFFLKYRWLGEHLVFYAWSHMLVM  159 (296)
T ss_pred             ccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHcCCCcccCCCCchHHHHHHHHHHHHHH
Confidence            99999999999999998877766544322   3466778888888887 88995   2 777777799999999988889


Q ss_pred             hhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccch
Q 014998          209 LGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADAS  262 (414)
Q Consensus       209 ~G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~  262 (414)
                      +.++..++.+++..++......+|+..-...+.++|+|+|+++|+||+|+++|.
T Consensus       160 g~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~  213 (296)
T PRK05951        160 GLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGR  213 (296)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcH
Confidence            998999999999988888888888888888899999999999999999999974

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=1.3e-26  Score=227.48  Aligned_cols=274  Identities=14%  Similarity=0.043  Sum_probs=190.0

Q ss_pred             HhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998           62 HYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR  141 (414)
Q Consensus        62 ~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~  141 (414)
                      +.++.++++.|+.+.......+..++...  ...++......++++++.++++|++||++|+|+|++|+  ++||.++++
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~--~~R~~~s~~   77 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMAS--LLLGLPISWLLLLITFLIAAAVYIINYLTDLEEDIINK--PERVVFSET   77 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHH--HHHcChhHHHHHHHHHHHHHHHHHhhhhcCCchhhcCC--CchHHHHHH
Confidence            34689999999999888777665553221  11232335567788899999999999999999999998  478888555


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-----CCcccch-hhhHhhhhcccccchhhhhcc
Q 014998          142 ISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-----LKQIHPV-NTWVGAIVGAIPPLLGWTAAV  215 (414)
Q Consensus       142 IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-----lKr~t~~-nv~vG~~~Galp~l~G~~A~~  215 (414)
                      ...+.++.+..+...+|+.++....|+..+.+++++.++ ++.|+.     +||.+.. |+.+|...|..++++++++.+
T Consensus        78 ~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~~  156 (285)
T PRK12872         78 KAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLIL-GILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQ  156 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhcc
Confidence            444444444444444444443333488888888888877 889984     6776655 899999999888888888877


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 014998          216 GHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFC  295 (414)
Q Consensus       216 g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~  295 (414)
                      +.+++..++.+...+++....+..+.++|+|+|+++|+||+|+.+|. +++.+......+......+++...|.. ++++
T Consensus       157 ~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~-~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  234 (285)
T PRK12872        157 LTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK-ERTLKFLLILNLLFLILLILGVYTGLL-PLLL  234 (285)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcch-HHHHHHHHHHHHHHHHHHHHHHHHhHh-hHHH
Confidence            76777777777777788888888888999999999999999999985 556555444444444445555556653 3444


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014998          296 LESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFH  342 (414)
Q Consensus       296 ~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~  342 (414)
                      +..++......+...++.+.+++++..+....-..+..+-.+.++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  281 (285)
T PRK12872        235 LVLLLLLAYVLYYIIKLFAADDKKDLLYLSLLDKEHMLLGLISMLLG  281 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhHHHHHhHHHHHHHHHHHHHH
Confidence            44444445555566777777777766655554444443333334433

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.95  E-value=1.6e-26  Score=221.00  Aligned_cols=183  Identities=21%  Similarity=0.228  Sum_probs=152.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHH
Q 014998           77 MLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGV  156 (414)
Q Consensus        77 ~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~  156 (414)
                      .+.+.+++.|..++.++..++.......+++++.+.++|.+||+.|+|.|++++|+++||+++|++|++++..++.++.+
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~   81 (257)
T PF01040_consen    2 PLSFLPVLAGLALASGGPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLL   81 (257)
T ss_pred             hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHH
Confidence            34566777886666666677877778888888999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhc---CCCcccch-hhhHhhhhcccccchhhhhccCCCChHHHHHHHHHHHH
Q 014998          157 AGTALLAWKANMLTAGLAASNLILYAFVYT---PLKQIHPV-NTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFW  232 (414)
Q Consensus       157 ~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt---~lKr~t~~-nv~vG~~~Galp~l~G~~A~~g~~~~~~~lL~~~~~lw  232 (414)
                      +++++++ ..|+..+.+.++..+. .+.|+   .+||++.+ ++++|...+ +++..|+.+.+++.+...++++...+++
T Consensus        82 l~l~l~~-~~~~~~~~~~~~~~~~-~~~Ys~~~~lk~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (257)
T PF01040_consen   82 LGLLLAL-LLGPWFLLILLLGFLL-GLLYSPPLRLKRRPLWGELVVALVFG-LLILLGAYAAGGDPPPPPFLLAIFFFLL  158 (257)
T ss_pred             HHHHHHH-hcCchhHHHHHHHHHH-HHHHhhhhhhcceeccchhhHHHhhh-HhhhhhhhhcCCcccHHHHHHHHHHHHH
Confidence            8887774 6788888888887777 68999   59999986 678888765 7788888888877777777766665666


Q ss_pred             HHHHHHHHHhhchHHHHHCCCCccccccch
Q 014998          233 QIPHFMALAYLCRNDYAAGGYRMISLADAS  262 (414)
Q Consensus       233 ~~~h~~~~a~~D~edD~~aG~ktlav~~G~  262 (414)
                      .........++|.|+|+++|+||+|+.+|.
T Consensus       159 ~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~  188 (257)
T PF01040_consen  159 IFAIMFFNDIRDIEGDRKAGRRTLPVLLGE  188 (257)
T ss_pred             HHHHHHHHHhhhHHHHHHcCCcchHHHHHH
Confidence            666555668999999999999999999974

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.95  E-value=1.1e-25  Score=221.18  Aligned_cols=250  Identities=20%  Similarity=0.072  Sum_probs=171.4

Q ss_pred             HHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcH--HHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCcc
Q 014998           61 RHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDL--AGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLP  138 (414)
Q Consensus        61 ~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~--~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLp  138 (414)
                      ...++.+++++||..|+..+.+..+|+..+. ..+++  ..+.++++..+..+...|.+|||+|+|+|++|+|+  ||++
T Consensus         9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g-~~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~--~~i~   85 (292)
T PRK13595          9 LLPLRRLLLISRPALWVNTVGTLVTGVWLTG-HLYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRETDAASPRK--GGWQ   85 (292)
T ss_pred             hhHHHHHHHHhCcHHHHHHHHHHHHHHHHhc-CcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC--CCCC
Confidence            3455778999999999999999999997764 35676  45556667777788899999999999999999965  7888


Q ss_pred             CCCCCHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHhc---C-CCcccch-hhhHhhhhcccccch
Q 014998          139 SGRISVRHAVTWASSVGVA----GTALLAWKANMLTAGLAASNLILYAFVYT---P-LKQIHPV-NTWVGAIVGAIPPLL  209 (414)
Q Consensus       139 sG~IS~~~Al~~~~~l~~~----gl~ll~~~~n~~~~~l~l~~l~ly~~iYt---~-lKr~t~~-nv~vG~~~Galp~l~  209 (414)
                      +|++|++++..+...+.++    ++.+. ...|+.+..+.+++.++ .+.||   . +|+++++ ++.. ..+| +|...
T Consensus        86 ~G~is~~~~~~~~~~~~~~~~~~~l~la-~~l~~~~~~l~~v~~~l-~~~YS~pPlRlK~rp~l~~l~~-~~~g-~p~~~  161 (292)
T PRK13595         86 GARLSPGEVRPLLRAVLLLNAPFLLYLA-LLLPPAATLLLLLYAAL-FVGYSLPPLRFKARPFLDGLSN-AAYA-LPLAL  161 (292)
T ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH-HHHHccCccchhcCcchhHHHH-HHHH-HHHHH
Confidence            9999999999876554444    33333 36788888888888877 88998   3 7777766 4433 3343 44444


Q ss_pred             hhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014998          210 GWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGV  289 (414)
Q Consensus       210 G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl  289 (414)
                      | .++.|....  +...+..++|.+++|..++++|+|+||+.|+||+|+++|. +++.+.+....+..+ ..+..  .  
T Consensus       162 ~-~~~~g~~~~--~~~l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~-r~a~~~a~~~~~~a~-~~~~~--~--  232 (292)
T PRK13595        162 P-ALALGAPVP--WPPLLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGV-RGTALYALAWFLLAG-ALLWP--V--  232 (292)
T ss_pred             H-HHHcCCcch--HHHHHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCc-HhHHHHHHHHHHHHH-HHHHH--h--
Confidence            4 556665432  2333566789999999999999999999999999999984 555544333222111 11111  1  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhH
Q 014998          290 TSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLL  330 (414)
Q Consensus       290 ~~~~y~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~  330 (414)
                       ++...+.   +.+.......+++.+++.|++.+..+.+.+
T Consensus       233 -~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (292)
T PRK13595        233 -SRLTALA---LWLICGGMALALWRRPTPETAHRLYPLSIV  269 (292)
T ss_pred             -cchHHHH---HHHHHHHHHHHHhcCCCHHHHhccchHHHH
Confidence             1222211   111112234456688888888777555433

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.95  E-value=2.8e-25  Score=221.89  Aligned_cols=199  Identities=9%  Similarity=0.062  Sum_probs=165.5

Q ss_pred             hHHHHHhHhhhhHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccC--CCCCCCCcc
Q 014998           63 YGRCYWELSKARLSMLVVATSGTGFALGS--GSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKM--KRTMRRPLP  138 (414)
Q Consensus        63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~--~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~--~RT~~RPLp  138 (414)
                      .+|.|++++||++...++.+++.|..+|.  .+.+++...+++++++++.++++|.+|||+|.+.|+.+  .++++|+++
T Consensus         2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~   81 (317)
T PRK13387          2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIG   81 (317)
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhc
Confidence            46889999999999999999999999985  34678888889999999999999999999997554444  345789999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHhcC----CCcccchhhhHhhhhcccccchhh
Q 014998          139 SGRISVRHAVTWASSVGVAGTALLA---WKANMLTAGLAASNLILYAFVYTP----LKQIHPVNTWVGAIVGAIPPLLGW  211 (414)
Q Consensus       139 sG~IS~~~Al~~~~~l~~~gl~ll~---~~~n~~~~~l~l~~l~ly~~iYt~----lKr~t~~nv~vG~~~Galp~l~G~  211 (414)
                      +|.+|+++++..+.++.+++.++..   ...|+....+++++++. ++.||.    +||+...++.+|..+|.+.+++++
T Consensus        82 ~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~-~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~~  160 (317)
T PRK13387         82 QHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAI-GILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLAV  160 (317)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH-hhhhcCCCcccccCccHHHHHHHHHHHHHHHHHH
Confidence            9999999999888887777665322   35678888889998888 889983    899988899999999988888888


Q ss_pred             hhccCCCChHHHH--------------------HHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccch
Q 014998          212 TAAVGHVSLNGMI--------------------LPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADAS  262 (414)
Q Consensus       212 ~A~~g~~~~~~~l--------------------L~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~  262 (414)
                      +..++.+++..++                    .++...+.+..-...+.++|+|+|+++|.||+|+++|.
T Consensus       161 yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~  231 (317)
T PRK13387        161 YINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGR  231 (317)
T ss_pred             HHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcH
Confidence            8888877766554                    56666676666667788999999999999999999973

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.94  E-value=1.1e-24  Score=213.56  Aligned_cols=217  Identities=11%  Similarity=0.016  Sum_probs=156.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014998           97 LAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAAS  176 (414)
Q Consensus        97 ~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~  176 (414)
                      ..+.++.++++++..+++|++||++|+|+|++|+  |+||||||++|+++|..++.++.++++.+.     ..+ ...+.
T Consensus        45 ~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~--P~RPLPsG~VS~~~A~~~si~L~~~~l~L~-----~l~-~i~i~  116 (299)
T PRK13592         45 GIQEFVGVFTVFGFWMILRIADDFKDYETDRRLF--PHRALPSGRVKKKDLAIALSFIVAVSVLLN-----VLF-MNNVG  116 (299)
T ss_pred             chHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcC--CCCCCCcCCCCHHHHHHHHHHHHHHHHHHH-----HHH-HHHHH
Confidence            3456677788899999999999999999999998  899999999999999999988866655444     333 22333


Q ss_pred             HHHHHHHHh-----cC-CCcccch-hhhHhhhhcccccch---------hhhhccCCCC--hHHHHHHHHHHHHHHHHHH
Q 014998          177 NLILYAFVY-----TP-LKQIHPV-NTWVGAIVGAIPPLL---------GWTAAVGHVS--LNGMILPAALYFWQIPHFM  238 (414)
Q Consensus       177 ~l~ly~~iY-----t~-lKr~t~~-nv~vG~~~Galp~l~---------G~~A~~g~~~--~~~~lL~~~~~lw~~~h~~  238 (414)
                      +.+. .++|     .. +||.+.. |+.++.+.| .+++.         |..+ .|...  ...+++++..++-+.+.+.
T Consensus       117 ~~~i-~~lY~~lm~a~~~K~~~l~gNl~Va~ltg-~~f~~g~~~~~~~fg~~~-~g~~~~~~~~~~l~l~afl~~l~rEI  193 (299)
T PRK13592        117 WFLF-LYIYGTLMSFWFFKRDKIQNSLPLALVTH-NPVMMILNLYTISFVCYK-YNLPLLSLPTVLLAFTMYFPSLIWEV  193 (299)
T ss_pred             HHHH-HHHHHHHHHHHHHcccCCCcchhhhhhcc-chhhhchhhhhhhhhhhh-cccchhhHHHHHHHHHHHHHHHHHHH
Confidence            3333 4456     76 9998877 899999997 44422         2112 22222  2235677788888999999


Q ss_pred             HHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 014998          239 ALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYD-WGVTSGWFCLESSLITLAISAAAFSFYRDRT  317 (414)
Q Consensus       239 ~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~-~gl~~~~y~~~a~~~~~~il~~~~~~~~~~~  317 (414)
                      ...++| |||++ |++|+|+.+|. +++.+.+....+..+.++++++. .|.-++   ...++.++++++..+++.++++
T Consensus       194 ~KdieD-~gd~~-~~~Tlpi~~G~-kkA~~ia~~l~ii~v~~s~lp~~~~g~~g~---~~l~~~~~~~l~~~~~~lk~p~  267 (299)
T PRK13592        194 CRKIRA-PKDET-EYVTYSKLFGY-KKATRFIEVVTLLDILTNFALLWNISHVGV---VVLVLNVIWMTVQFEQFIKSPT  267 (299)
T ss_pred             HHhhcC-Ccccc-CCeeechhccc-hhHHHHHHHHHHHHHHHhhHHHHHhhhhHH---HHHHHHHHHHHHHHHHHhcCCC
Confidence            999999 88886 59999999985 56666655555656667788876 554333   2234556788889999999887


Q ss_pred             H----HHHHHHHHHhhH
Q 014998          318 T----QKARKMFHASLL  330 (414)
Q Consensus       318 ~----~~a~~~F~~s~~  330 (414)
                      +    ++.++..|.+..
T Consensus       268 ~~~~~~~~~~~~ki~~~  284 (299)
T PRK13592        268 RFNIRERVERYTYITET  284 (299)
T ss_pred             cchhhHHHHHHHHHHHH
Confidence            6    567777666554

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.93  E-value=1.2e-23  Score=206.70  Aligned_cols=189  Identities=15%  Similarity=0.085  Sum_probs=140.8

Q ss_pred             HHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH-HHhhccccccccccCCCCCCCCccCCCCC
Q 014998           65 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASA-NSLNQLFEISNDAKMKRTMRRPLPSGRIS  143 (414)
Q Consensus        65 k~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~-~~iND~~D~eiD~~~~RT~~RPLpsG~IS  143 (414)
                      +.+++++||+.|+...+|...|+++| ++.+++ .++++.+.....+..+ |.+|||+|+|.|+.|+||..|.   |.+|
T Consensus         2 ~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~~~-~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~~---g~i~   76 (282)
T PRK13105          2 RQLLLSSRPISWINTAYPFAAAYLLA-GGEIDW-LFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGVE---GAVL   76 (282)
T ss_pred             hhHHHhcccHHHhccHHHHHHHHHHH-CCCCCh-HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCCC---CccC
Confidence            67899999999999999999999999 455666 4444444433333333 4669999999999999987764   8899


Q ss_pred             HHHH----HHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC----CCcccchh-h-hHhhhhcccccchhhh
Q 014998          144 VRHA----VTWASSVGV-AGTALLAWKANMLTAGLAASNLILYAFVYTP----LKQIHPVN-T-WVGAIVGAIPPLLGWT  212 (414)
Q Consensus       144 ~~~A----l~~~~~l~~-~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~----lKr~t~~n-v-~vG~~~Galp~l~G~~  212 (414)
                      ++|+    +.+..+..+ .++.+. ...|+.++.++.++++. .+.||.    +|++...+ . +....+| . .+.|..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~l~l~-~~~~~~~~~l~~~ai~~-~~~YS~~p~rlk~~gl~d~~t~~~~f~~-~-~v~G~~  152 (282)
T PRK13105         77 DRAMHRTTLWASVVTTVPFLVVLL-AVGSWASGLVLAVSVFA-VVAYSAPGLRFKERPFLDSLTSSTHFVS-P-ALYGLV  152 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH-HHHhcCCCccccccchHHHHHHHHHHHH-H-HHHHHH
Confidence            9987    333333232 233232 23478888899888887 889994    77777764 3 4444443 2 444445


Q ss_pred             hccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccch
Q 014998          213 AAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADAS  262 (414)
Q Consensus       213 A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~  262 (414)
                      ..++.+++..++++..+++|..+.+..++++|.|+|+++|+||+|+++|.
T Consensus       153 ~~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~  202 (282)
T PRK13105        153 LAGAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGA  202 (282)
T ss_pred             HhhccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcH
Confidence            55677788888888999999999999999999999999999999999973

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.93  E-value=7.2e-24  Score=209.51  Aligned_cols=161  Identities=16%  Similarity=0.100  Sum_probs=127.7

Q ss_pred             hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCc
Q 014998           60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSG--STIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPL  137 (414)
Q Consensus        60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~--~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPL  137 (414)
                      .++++++|+|++||++|..+++... +.+++..  ....+...++++++.+++++++|++||++|+|+|++|+||++||+
T Consensus         7 ~~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~~~~~~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPl   85 (295)
T PRK12324          7 PKNLLAGYLKLLRPKQWIKNLFVFA-APIFAGNLLNPGALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPI   85 (295)
T ss_pred             hHHHHHHHHHHhCchHHHHHHHHHH-HHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCC
Confidence            4567899999999999999887444 4455432  112344566777888889999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccchh-hhHhhhhcccccchhhhhcc
Q 014998          138 PSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVN-TWVGAIVGAIPPLLGWTAAV  215 (414)
Q Consensus       138 psG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~n-v~vG~~~Galp~l~G~~A~~  215 (414)
                      |+|++|+++|+.++.++.++|+++++ ++|+.++.+.+..+ ++.++||. +||++..+ +.++..++ ++++.|..+.+
T Consensus        86 asG~is~~~A~~~~~~l~~~~l~la~-~l~~~~~~~~~~~~-~~~~~Ys~~lK~~~~~d~l~va~~~~-lr~~~G~~a~~  162 (295)
T PRK12324         86 ASGVVSVSLAYILAVVLLVASLALAY-LLSPKLALVLLVYL-VLNLAYSFKLKHQPVLDVFCIASGFV-LRAIAGGVAIG  162 (295)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHhhHHhcCCchhhHHHHHHHHH-HHHHHHHHHhC
Confidence            99999999999999999999998875 67988877755444 45899998 99999885 67777674 88888977765


Q ss_pred             CCCChHHHHHH
Q 014998          216 GHVSLNGMILP  226 (414)
Q Consensus       216 g~~~~~~~lL~  226 (414)
                      .  +.+.|++.
T Consensus       163 ~--~~s~wll~  171 (295)
T PRK12324        163 V--PLSPWLLL  171 (295)
T ss_pred             C--CccHHHHH
Confidence            4  44555544

>PRK08238 hypothetical protein; Validated

Probab=99.93  E-value=3.7e-24  Score=224.31  Aligned_cols=187  Identities=17%  Similarity=0.160  Sum_probs=142.4

Q ss_pred             HhHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCC-CCc-HHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCC
Q 014998           59 LIRHYGRCYWELSKARLSMLVVATSGTGFALGSGS-TID-LAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRP  136 (414)
Q Consensus        59 ~~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~-~~~-~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RP  136 (414)
                      ..+.++++|++++||+++..+++. +++++++... .++ +..+++++++..++++++|++||++|+|+|++|+||++||
T Consensus       186 ~~~~~~~~~~~l~Rp~q~~kn~l~-~~p~l~a~~~~~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RP  264 (479)
T PRK08238        186 PRPARLRTWLKALRVHQWAKNLLV-FVPLLAAHQFGDLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRP  264 (479)
T ss_pred             CCchHHHHHHHHhCCcHHHHHHHH-HHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCC
Confidence            345678999999999999999986 4577776431 222 4456778888899999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccchh-hhHhhhhcccccchhhhhc
Q 014998          137 LPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVN-TWVGAIVGAIPPLLGWTAA  214 (414)
Q Consensus       137 LpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~n-v~vG~~~Galp~l~G~~A~  214 (414)
                      +|||++|+++|+.++.+++++|+++++ ++|+.++.+.+. .+++.++||+ +||+++++ +++|+.+ ++++++|+++.
T Consensus       265 lasG~is~~~A~~~~~~l~~~~~~l~~-~l~~~~~~~~~~-~~~~~~~Ys~~lKr~~~~~~~~la~~~-~lr~~~G~~a~  341 (479)
T PRK08238        265 FASGALPIPFGLAAAPLLLLAGLALAL-ALGPAFLLVLLA-YLALTLAYSLRLKRKVLVDVLTLAALY-TLRIIAGAAAI  341 (479)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHH-HHHHHHHhhHHhcCCccccchHHHHHH-HHHHHHHHHHh
Confidence            999999999999999999999998775 578855555444 4455899998 99999995 6667766 69999998875


Q ss_pred             cCCCChHHHHHHHHHHH-HHHHHHHHHHhhchHHHHHCCC
Q 014998          215 VGHVSLNGMILPAALYF-WQIPHFMALAYLCRNDYAAGGY  253 (414)
Q Consensus       215 ~g~~~~~~~lL~~~~~l-w~~~h~~~~a~~D~edD~~aG~  253 (414)
                      +  +++..|+++..+++ |..+  +..=+.+.+.+++.|.
T Consensus       342 ~--~~~s~wll~~~~~~~l~la--~~KR~~El~~~~~~~~  377 (479)
T PRK08238        342 G--VALSFWLLAFSMFFFLSLA--LVKRYTELRRALQRGK  377 (479)
T ss_pred             c--cCHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHhcCC
Confidence            4  67777776544333 3222  2222334444556554

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.93  E-value=2.2e-23  Score=205.34  Aligned_cols=190  Identities=15%  Similarity=0.011  Sum_probs=159.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHHHHHHHhhccccc--cccccCCCCCCCCccCCCCCHHHHH
Q 014998           72 KARLSMLVVATSGTGFALGS-GSTIDLAGLCWTCTGTMMVAASANSLNQLFEI--SNDAKMKRTMRRPLPSGRISVRHAV  148 (414)
Q Consensus        72 RP~~~~~~~~~~~~G~llA~-~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~--eiD~~~~RT~~RPLpsG~IS~~~Al  148 (414)
                      ||+....++.++++|..+|. .+.+++...++++++++++++++|.+|||+|.  +.|+.++.++.|++++|.+|++++.
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~   80 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLHAFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVK   80 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHH
Confidence            89999999999999999985 34789998999999999999999999999996  4677554457899999999999999


Q ss_pred             HHHHHHHHHHHHHHHH---HhHH------HHHHHHHHHHHHHHHHhcC----CCcccchhhhHhhhhcccccchhhhhcc
Q 014998          149 TWASSVGVAGTALLAW---KANM------LTAGLAASNLILYAFVYTP----LKQIHPVNTWVGAIVGAIPPLLGWTAAV  215 (414)
Q Consensus       149 ~~~~~l~~~gl~ll~~---~~n~------~~~~l~l~~l~ly~~iYt~----lKr~t~~nv~vG~~~Galp~l~G~~A~~  215 (414)
                      ..+.++.+++.++..+   ..++      ....+++++++. ++.||.    +|++...++.++..+|.+++++++++++
T Consensus        81 ~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~-~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~  159 (284)
T TIGR00751        81 TALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAA-AITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQYLQA  159 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHH-hHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            8887777655544332   2343      345677777777 789983    7887777999999999899999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccch
Q 014998          216 GHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADAS  262 (414)
Q Consensus       216 g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~  262 (414)
                      +.+++..++..+...+++......+.++|+|+|+++|.||+++++|.
T Consensus       160 ~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~  206 (284)
T TIGR00751       160 HRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGD  206 (284)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcch
Confidence            99999988888878888888788889999999999999999999973

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.92  E-value=6e-23  Score=201.96  Aligned_cols=199  Identities=16%  Similarity=0.165  Sum_probs=137.1

Q ss_pred             hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHH--HHHHHhhccccccccccCCCCC-CC
Q 014998           60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTID-LAGLCWTCTGTMMVA--ASANSLNQLFEISNDAKMKRTM-RR  135 (414)
Q Consensus        60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~-~~~lll~~lg~~l~~--aa~~~iND~~D~eiD~~~~RT~-~R  135 (414)
                      ..++++.|+++.||+.+...+.++++|..+|.....+ +...++++++.+++.  ...|.+||++|+|.|++|+||+ +|
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk~~~r   83 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAVALFAYFLFPANVFLYGVNDVFDADTDELNPKKDRER   83 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHhcchhhhhhhccccCCCccCCC
Confidence            4567899999999999999999999999998743221 212333344444421  2335589999999999999998 68


Q ss_pred             Ccc-CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc---C-CCcccchhhhHhhhhcccccchh
Q 014998          136 PLP-SGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT---P-LKQIHPVNTWVGAIVGAIPPLLG  210 (414)
Q Consensus       136 PLp-sG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt---~-lKr~t~~nv~vG~~~Galp~l~G  210 (414)
                      |++ +|+.+...+...   ...+++.+.. ..++....+.+. .+++.+.||   . +|+++..+...+.++ .+|++++
T Consensus        84 ~~~~s~~~~~~~~~~l---~~~l~l~l~~-~~~~~~~~~ll~-~i~~~~~YS~pP~rlk~~p~~~~~~~g~~-~~~~~~~  157 (282)
T PRK12875         84 EVRYRGDRRVLVAVAL---SGALALAFLL-VLPPAAWPALLA-FLVLSVEYSAPPLRFKTTPVLDSLSNGLY-ILPGVAA  157 (282)
T ss_pred             CccHHHHHHHHHHHHH---HHHHHHHHHH-HhhHHHHHHHHH-HHHHHHHHcCCCccchhccHHHHHHHHHH-HHHHHHH
Confidence            887 554444433222   2233343332 334443333333 344488998   3 888887775443333 4788899


Q ss_pred             hhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHH
Q 014998          211 WTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTA  267 (414)
Q Consensus       211 ~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta  267 (414)
                      |++++|++++..  +++..++|+.+.++.++++|+|+|+++|+||+|+++|. +++.
T Consensus       158 y~~~tg~~~~~~--l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~-~~a~  211 (282)
T PRK12875        158 YALVSGSLPPLL--AVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGE-RRTY  211 (282)
T ss_pred             HHHHcCCCcHHH--HHHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccH-hhHH
Confidence            999988776544  45556899999999999999999999999999999984 4443

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.91  E-value=2.8e-22  Score=196.55  Aligned_cols=276  Identities=15%  Similarity=0.116  Sum_probs=198.2

Q ss_pred             HhHHHHHhHhhhhHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHhhccccc--cccc--cCCCCCCC
Q 014998           62 HYGRCYWELSKARLSMLVVATSGTGFALGS--GSTIDLAGLCWTCTGTMMVAASANSLNQLFEI--SNDA--KMKRTMRR  135 (414)
Q Consensus        62 ~~lk~yl~L~RP~~~~~~~~~~~~G~llA~--~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~--eiD~--~~~RT~~R  135 (414)
                      .+.+.|+|++||++...++.|+++|..+|.  +..+++...+++++++.+.+++.|..|||+|.  ..|.  ...++.++
T Consensus         6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g   85 (303)
T COG1575           6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSG   85 (303)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccc
Confidence            455899999999999999999999999886  22578888999999999999999999999996  4675  44566778


Q ss_pred             CccCCCCCHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHhcC-CC---cccchhhhHhhhhcccccc
Q 014998          136 PLPSGRISVRHAVTWASSVGVAGTALLA---WKANMLTAGLAASNLILYAFVYTP-LK---QIHPVNTWVGAIVGAIPPL  208 (414)
Q Consensus       136 PLpsG~IS~~~Al~~~~~l~~~gl~ll~---~~~n~~~~~l~l~~l~ly~~iYt~-lK---r~t~~nv~vG~~~Galp~l  208 (414)
                      -+...+++++..+.+.+.+...+.++..   ...|+..+.+|+++++. ++.||. -|   +.+..++.+|.++|.+.++
T Consensus        86 ~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~-g~~YTgGp~PlgY~gLGEi~~~vffG~l~v~  164 (303)
T COG1575          86 LIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAA-GILYTGGPFPLGYMGLGEIFVGVFFGPLIVL  164 (303)
T ss_pred             eeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-eeeeccCCcCcccCCHHHHHHHHHHHHHHHH
Confidence            8888899999988877765544433322   24567777889898888 889996 44   4445579999999999999


Q ss_pred             hhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHH---HHHHHHHHHHHHHHH
Q 014998          209 LGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVA---LRNCLYLVPLGYLAY  285 (414)
Q Consensus       209 ~G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~---~~~~l~lv~ls~l~~  285 (414)
                      +.++.+++++++..++.++.+.+-+..-..++.++|.|+|+++|.+|+|++.|  ++.++..   +....++..+  +..
T Consensus       165 g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG--~~~~~~l~~~l~~~a~l~~~--~~~  240 (303)
T COG1575         165 GAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLG--RKNARKLYAALLVVAYLAIV--IFV  240 (303)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeec--cHhHHHHHHHHHHHHHHHHH--HHH
Confidence            99999999999998888888888777777788899999999999999999997  4443331   1122222222  223


Q ss_pred             HhhchhHHHHHHHHHHHHHHHHHHHHhhcCCcHH----HHHHHHHHhhHHHHHHHHHHHHHH
Q 014998          286 DWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQ----KARKMFHASLLYLPVFMSGLLFHR  343 (414)
Q Consensus       286 ~~gl~~~~y~~~a~~~~~~il~~~~~~~~~~~~~----~a~~~F~~s~~~l~~~l~~~li~~  343 (414)
                      ..+...+++++ .++..-.......++.+++++.    .++++=+.+..+..++++++++..
T Consensus       241 i~~~~~~~~ll-~ll~~Pl~ir~~r~v~~~~~~~~~~p~l~~~~~~~~~~~~l~~~~i~~~~  301 (303)
T COG1575         241 ILGLFPVWGLL-FLLALPLAIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLAVGILLSQ  301 (303)
T ss_pred             HHHhchHHHHH-HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44544445532 2222122233333444444432    355555666666677777666654

>PLN02922 prenyltransferase

Probab=99.91  E-value=4.9e-22  Score=198.31  Aligned_cols=198  Identities=15%  Similarity=0.084  Sum_probs=160.0

Q ss_pred             hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHhhccccc--cccccCCCCCCC
Q 014998           60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSG--STIDLAGLCWTCTGTMMVAASANSLNQLFEI--SNDAKMKRTMRR  135 (414)
Q Consensus        60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~--~~~~~~~lll~~lg~~l~~aa~~~iND~~D~--eiD~~~~RT~~R  135 (414)
                      ...++|.|++.+||+.....+.++++|.++|..  +.+++...+++++++++.++++|.+|||+|.  ..|+.++.++.|
T Consensus        11 ~~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~   90 (315)
T PLN02922         11 ELSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVN   90 (315)
T ss_pred             CccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCC
Confidence            456678899999999999999999999998852  5789999999999999999999999999995  578754322234


Q ss_pred             CccCCCCCHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHhcC----CCcccchhhhHhhhhccccc
Q 014998          136 PLPSGRISVRHAVTWASSVGVAGTALLAWK----ANMLTAGLAASNLILYAFVYTP----LKQIHPVNTWVGAIVGAIPP  207 (414)
Q Consensus       136 PLpsG~IS~~~Al~~~~~l~~~gl~ll~~~----~n~~~~~l~l~~l~ly~~iYt~----lKr~t~~nv~vG~~~Galp~  207 (414)
                      +  .|  |+++....+.++.++++...+..    .++....+++++++. ++.||.    +|++...++.++..+|.+++
T Consensus        91 ~--~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~-~~~Yt~gP~pl~y~gLGE~~v~i~fG~l~v  165 (315)
T PLN02922         91 L--VG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILC-GYVYQCPPFRLSYKGLGEPLCFAAFGPLAT  165 (315)
T ss_pred             c--cc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH-HHHHhcCCcccccCcchHHHHHHHHHHHHH
Confidence            4  34  99999887777666655322221    256777888888887 899982    89988889999999998888


Q ss_pred             chhhhhccC----------CCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccch
Q 014998          208 LLGWTAAVG----------HVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADAS  262 (414)
Q Consensus       208 l~G~~A~~g----------~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~  262 (414)
                      .+.+.++++          .+++..++..+...+++..--.++.++|+|+|+++|.||+++++|.
T Consensus       166 ~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~  230 (315)
T PLN02922        166 TAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGT  230 (315)
T ss_pred             HHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEECh
Confidence            777777766          3566777888888888888788888999999999999999999973

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.91  E-value=6.6e-22  Score=196.47  Aligned_cols=202  Identities=12%  Similarity=0.029  Sum_probs=167.0

Q ss_pred             HHhHHHHHhHhhhhHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccCCCCCCCC
Q 014998           61 RHYGRCYWELSKARLSMLVVATSGTGFALGS--GSTIDLAGLCWTCTGTMMVAASANSLNQLFEIS--NDAKMKRTMRRP  136 (414)
Q Consensus        61 ~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~--~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~e--iD~~~~RT~~RP  136 (414)
                      +.+++.|++.+||+....+++++++|.++|.  ++.+++...+++++++++.++++|.+|||+|.+  .|+. +   ...
T Consensus         9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~---~~~   84 (304)
T PRK07419          9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKN-K---FHS   84 (304)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-c---ccC
Confidence            4557889999999999999999999999885  356899999999999999999999999999975  8884 2   223


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHhcC----CCcccchhhhHhhhhcccccch
Q 014998          137 LPSGRISVRHAVTWASSVGVAGTALLA---WKANMLTAGLAASNLILYAFVYTP----LKQIHPVNTWVGAIVGAIPPLL  209 (414)
Q Consensus       137 LpsG~IS~~~Al~~~~~l~~~gl~ll~---~~~n~~~~~l~l~~l~ly~~iYt~----lKr~t~~nv~vG~~~Galp~l~  209 (414)
                      .+++..+++++...+.++.+++.++..   ...++....+++++++. ++.||.    +|++...++.++..+|.+++++
T Consensus        85 ~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~-~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g  163 (304)
T PRK07419         85 VVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFL-GYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAA  163 (304)
T ss_pred             cccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH-hheccCCCcccCCCCchHHHHHHHHHHHHHHH
Confidence            556666899988887777666554332   23577778888888887 889972    8998888999999999999999


Q ss_pred             hhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHH
Q 014998          210 GWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALV  269 (414)
Q Consensus       210 G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~  269 (414)
                      +++.+++.+++..++..+...+.+..--.++.++|+|+|+++|.+|+++++|  ++.+..
T Consensus       164 ~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG--~~~a~~  221 (304)
T PRK07419        164 ALYSQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLG--TKRGAQ  221 (304)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeec--hHhHHH
Confidence            9999999999998888888888877777788899999999999999999997  444433

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.90  E-value=3.4e-21  Score=189.92  Aligned_cols=196  Identities=16%  Similarity=0.081  Sum_probs=159.1

Q ss_pred             HHhHhhhhHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHhhccccc--cccccCCCCCCCCccCCCC
Q 014998           67 YWELSKARLSMLVVATSGTGFALGS--GSTIDLAGLCWTCTGTMMVAASANSLNQLFEI--SNDAKMKRTMRRPLPSGRI  142 (414)
Q Consensus        67 yl~L~RP~~~~~~~~~~~~G~llA~--~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~--eiD~~~~RT~~RPLpsG~I  142 (414)
                      |++.+||+....++.+++.|..+|.  ++.+|+...+++++++++.++++|.+|||+|.  ..|+.+..++.|    +..
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~----~~~   77 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVN----LTG   77 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCccc----ccC
Confidence            6789999999999999999999985  35689998999999999999999999999996  468843322233    334


Q ss_pred             CHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHhc--C--CCcccchhhhHhhhhcccccchhhhhcc
Q 014998          143 SVRHAVTWASSVGVAGTALLA---WKANMLTAGLAASNLILYAFVYT--P--LKQIHPVNTWVGAIVGAIPPLLGWTAAV  215 (414)
Q Consensus       143 S~~~Al~~~~~l~~~gl~ll~---~~~n~~~~~l~l~~l~ly~~iYt--~--lKr~t~~nv~vG~~~Galp~l~G~~A~~  215 (414)
                      |++++...+.++.+++.++..   ...++....+++++++. ++.||  +  +|++...++.++..+|.++++++++.++
T Consensus        78 ~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~-~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt  156 (285)
T TIGR02235        78 SRSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFL-GYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQS  156 (285)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhC
Confidence            678877766666555544332   23466677888888887 89998  2  8998888999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHH
Q 014998          216 GHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALV  269 (414)
Q Consensus       216 g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~  269 (414)
                      +.+++..++..+...+.+..--.++.++|+|+|+++|.||+++++|  ++.+..
T Consensus       157 ~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG--~~~a~~  208 (285)
T TIGR02235       157 QSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLG--TKLAAK  208 (285)
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheec--HHhHHH
Confidence            9999999998888888888877888899999999999999999997  444433

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PLN02878 homogentisate phytyltransferase

Probab=99.89  E-value=4.8e-21  Score=186.57  Aligned_cols=168  Identities=18%  Similarity=0.139  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014998           98 AGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASN  177 (414)
Q Consensus        98 ~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~  177 (414)
                      ..++.+.+++.++......+|||+|+|+||+||  |+||||||++|+++|+.+...++++|+.+++ ..|+.++..+++.
T Consensus        23 ~~~l~~~~~~l~~niyivglNd~~D~EIDkINk--P~rPIpSG~iS~~~a~~~~~~~~~lg~~la~-~~g~~~l~~al~~   99 (280)
T PLN02878         23 TGLLEALVPALLMNIYIVGLNQLYDIEIDKVNK--PYLPLASGEFSVATGVAIVTSFAIMSFGMGW-IVGSWPLFWALFV   99 (280)
T ss_pred             HHHHHHHHHHHhhhhheechhhhhhhcccccCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHChHHHHHHHHH
Confidence            445667788888888899999999999999999  9999999999999999999999999998886 6787666555555


Q ss_pred             HHHHHHHhcC------CCcccch-hhhH---hhhhcccccchhh-hhccC---CCChHHHHHHHHHHHHHHHHHHHHHhh
Q 014998          178 LILYAFVYTP------LKQIHPV-NTWV---GAIVGAIPPLLGW-TAAVG---HVSLNGMILPAALYFWQIPHFMALAYL  243 (414)
Q Consensus       178 l~ly~~iYt~------lKr~t~~-nv~v---G~~~Galp~l~G~-~A~~g---~~~~~~~lL~~~~~lw~~~h~~~~a~~  243 (414)
                      .++.+.+|+.      +||.... +...   +++...++...+. .++.|   .++...++..+.+++.....++.+.++
T Consensus       100 ~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~  179 (280)
T PLN02878        100 SFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIP  179 (280)
T ss_pred             HHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCc
Confidence            5233788983      4665544 2111   1111112211110 11112   123333433334455556677889999


Q ss_pred             chHHHHHCCCCccccccchhhHHHHH
Q 014998          244 CRNDYAAGGYRMISLADASGQRTALV  269 (414)
Q Consensus       244 D~edD~~aG~ktlav~~G~G~~ta~~  269 (414)
                      |.|+|++.|++|+|+++|. +++.++
T Consensus       180 DieGD~~~Gi~Tlpv~lG~-~~~~~i  204 (280)
T PLN02878        180 DVEGDRIFGIRSFSVRLGQ-KRVFWL  204 (280)
T ss_pred             CchhHHHCCCceechhhCh-HHHHHH
Confidence            9999999999999999984 455443

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.81  E-value=7.2e-18  Score=166.79  Aligned_cols=149  Identities=18%  Similarity=0.174  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014998          104 CTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAF  183 (414)
Q Consensus       104 ~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~  183 (414)
                      ++.+.+...++|++||++|+|+|++|+  |+||.+    |++.++.++++..++|+.+++ ..|+.  .+++++.+. ++
T Consensus        64 ~~~~~L~~~s~~~iNd~~D~eiD~IN~--P~r~~~----s~~~a~~ls~la~llGl~La~-~~g~~--ll~ll~~l~-g~  133 (307)
T PRK13591         64 CIAGGLIIYSVYTLDRALDSEEDAVNR--SELIGS----NKKIGLLVSLLAFLLGTYILA-MDGML--LLAFLPFIT-GY  133 (307)
T ss_pred             HHHHHHHHHHHHHHhhhccchhhhccC--cccccc----CHHHHHHHHHHHHHHHHHHHH-HHhHH--HHHHHHHHH-HH
Confidence            456678889999999999999999997  799997    899999999999999998875 66764  356667766 78


Q ss_pred             HhcC----------CCcccch-hhhHhhhhcccccchhhhhccCCCChHHHHHHHHHHHHH----HHHHHHHHhhchHHH
Q 014998          184 VYTP----------LKQIHPV-NTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQ----IPHFMALAYLCRNDY  248 (414)
Q Consensus       184 iYt~----------lKr~t~~-nv~vG~~~Galp~l~G~~A~~g~~~~~~~lL~~~~~lw~----~~h~~~~a~~D~edD  248 (414)
                      .|+.          +|..+.. |+.+|..+|.+.+. +.....+.     ++....+++..    .....++.++|.|+|
T Consensus       134 lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g-~~g~~~~~-----~~~~~~i~l~~~~~l~~~~iindirDiEGD  207 (307)
T PRK13591        134 LYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAG-IAGSYCGS-----LIPVGLIFLFFGVKLFINSCVYDFKDVKGD  207 (307)
T ss_pred             HhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHH-HHHhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Confidence            9993          3444545 89999999853322 11111111     11122222222    334467899999999


Q ss_pred             HHCCCCccccccchhhHHHHH
Q 014998          249 AAGGYRMISLADASGQRTALV  269 (414)
Q Consensus       249 ~~aG~ktlav~~G~G~~ta~~  269 (414)
                      ++.|.||+|+.+|. +++.+.
T Consensus       208 r~~G~kTLPV~lG~-~~A~~l  227 (307)
T PRK13591        208 TLAGIKTLPVSLGE-QKTRNL  227 (307)
T ss_pred             HHcCCeeEEEEECH-HHHHHH
Confidence            99999999999984 444433

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.53  E-value=1.3e-14  Score=136.43  Aligned_cols=227  Identities=15%  Similarity=0.114  Sum_probs=163.8

Q ss_pred             ccccCCcCCCCCCCCCCc-CCCCCChhhHhHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcC--C--CCcHHHHHHHHHH
Q 014998           32 RKCHGVRSSSSASASDSA-TGAAADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSG--S--TIDLAGLCWTCTG  106 (414)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~--~--~~~~~~lll~~lg  106 (414)
                      .|-+|.|+++.-..+.-. .-+-++-.+-..++.+.|+-..||+..-.++.++..|..+|..  +  .+.+...+++.++
T Consensus        28 ea~~g~~~~g~d~gv~~~~rltghp~~sg~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl~a~a  107 (359)
T KOG4581|consen   28 EAGDGADAAGADAGVAEQDRLTGHPQRSGTFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFLCAFA  107 (359)
T ss_pred             ecccCcccccCccCCcccccccCCCCcchHHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHHHHHHHhh
Confidence            344555555443322222 2222222334778889999999999999999999999999863  2  3455667778888


Q ss_pred             HHHHHHHHHHhhccccc--cccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH--HhHHHH---HHH-HHHHH
Q 014998          107 TMMVAASANSLNQLFEI--SNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAW--KANMLT---AGL-AASNL  178 (414)
Q Consensus       107 ~~l~~aa~~~iND~~D~--eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~--~~n~~~---~~l-~l~~l  178 (414)
                      +..++++||..|.|+|.  +||++..  .+|.++...+.+.+...++.++..+|.....+  .++|.-   ..+ -+.++
T Consensus       108 vlavh~agnlvntyfdf~kgid~kka--ddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggl  185 (359)
T KOG4581|consen  108 VLAVHCAGNLVNTYFDFIKGIDHKKA--DDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGL  185 (359)
T ss_pred             heeeecccchhhhhhhhhhccccccc--cchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCc
Confidence            88899999999999995  7998654  78999999999999999998888776544332  344422   122 12222


Q ss_pred             HHHHHHhcC---CCcccchhhhHhhhhcccccchhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCc
Q 014998          179 ILYAFVYTP---LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRM  255 (414)
Q Consensus       179 ~ly~~iYt~---lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~kt  255 (414)
                      -. .++|+-   .|.+...++++-+++|.+.++..++.++|+++|.++.-++.+.+-+-+..-.+..+|.|.||++|+-|
T Consensus       186 s~-sflytggigfkyialgdliili~fgpiavlfaf~~q~g~l~~~~l~yaiplalnteailhsnntrd~dndr~agivt  264 (359)
T KOG4581|consen  186 SG-SFLYTGGIGFKYIALGDLIILILFGPIAVLFAFAIQTGHLAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVT  264 (359)
T ss_pred             cc-ceeEecccceEEEeccCEEEEEeechHHHHHHHHHhcCceeEEeehheeeeccchHHHhccCCCcccccccccCeEE
Confidence            23 578985   78888888888888999999999999999988776655555555443322245678999999999999


Q ss_pred             cccccc
Q 014998          256 ISLADA  261 (414)
Q Consensus       256 lav~~G  261 (414)
                      +++..|
T Consensus       265 lailig  270 (359)
T KOG4581|consen  265 LAILIG  270 (359)
T ss_pred             EEEeec
Confidence            999986

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=93.44  E-value=1.4  Score=43.86  Aligned_cols=54  Identities=13%  Similarity=0.201  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHH
Q 014998          104 CTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTAL  161 (414)
Q Consensus       104 ~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~l  161 (414)
                      +++.++..++-..+||+.|+|-|++..   .|.++. ++..+.+..++.++.+++.++
T Consensus       171 ~~a~~l~~~~~~~in~i~Die~D~~aG---i~Tlav-~lG~~~a~~~~~~~~~~a~~~  224 (282)
T PRK12875        171 VAGGWLWAMGMHTFSAIPDIEPDRAAG---IRTTAT-VLGERRTYAYCAACWLLAAAA  224 (282)
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHcC---Cccchh-hccHhhHHHHHHHHHHHHHHH
Confidence            344556677778999999999999765   233332 444556665555444444433

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=91.05  E-value=8.1  Score=37.79  Aligned_cols=38  Identities=5%  Similarity=-0.116  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccc
Q 014998          223 MILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADA  261 (414)
Q Consensus       223 ~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G  261 (414)
                      .+.++..++.+.+-...+.+.|+|.|++. .+.-|+..|
T Consensus        40 ~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G   77 (279)
T PRK12884         40 LLGFLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSG   77 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCC
Confidence            33444556666666678889999999988 577777665

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=89.92  E-value=8  Score=37.89  Aligned_cols=37  Identities=14%  Similarity=0.127  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998          104 CTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR  141 (414)
Q Consensus       104 ~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~  141 (414)
                      .+..++....-+++||+-|+|-|++..+ +.=|..-|+
T Consensus       167 ~~~~fl~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~lG~  203 (285)
T PRK12872        167 AVFIFLKSFIREIVFDIKDIEGDRKSGL-KTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHHHHHhcccchhHHHcCC-cccchhcch
Confidence            3444455667778999999999998765 355665565

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=88.21  E-value=15  Score=36.07  Aligned_cols=36  Identities=11%  Similarity=-0.058  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccc
Q 014998          225 LPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADA  261 (414)
Q Consensus       225 L~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G  261 (414)
                      ..+..++-+.+-...+.+.|+|-|+... +.-|+..|
T Consensus        43 ~~l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G   78 (276)
T PRK12882         43 AFAAVFLATGAGNAINDYFDREIDRINR-PDRPIPSG   78 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCC
Confidence            3334445555556678889999998755 77777765

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=87.88  E-value=6.3  Score=39.23  Aligned_cols=55  Identities=11%  Similarity=0.212  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHH
Q 014998          104 CTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALL  162 (414)
Q Consensus       104 ~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll  162 (414)
                      .++..+..++-..+||+-|.|.|+++.   .|-+|. ++..+.+..++.++.+++.++.
T Consensus       166 ~~~~~~~~~a~~ii~~irDie~Dr~~G---~~Tlpv-~lG~~~a~~~~~~l~~~a~~~~  220 (282)
T PRK13105        166 LAAFFLWGMASHAFGAVQDVVADREAG---IASIAT-VLGARRTVRLAVGLYAAAAVLM  220 (282)
T ss_pred             HHHHHHHHHHHHHHHhCcchHhHHHcC---CccchH-HhcHHHHHHHHHHHHHHHHHHH
Confidence            344444577888999999999999875   233432 4567777777776666665444

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=87.15  E-value=21  Score=35.05  Aligned_cols=36  Identities=0%  Similarity=-0.202  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccc
Q 014998          225 LPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADA  261 (414)
Q Consensus       225 L~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G  261 (414)
                      ..+..++.+.+-...+.+.|+|.|++.. +.-|+.-|
T Consensus        42 ~~l~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG   77 (279)
T PRK09573         42 AALVVFLVCAGGNVINDIYDIEIDKINK-PERPIPSG   77 (279)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccC-CCCCcCCC
Confidence            3344556666666788899999998765 66666654

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=86.95  E-value=8.4  Score=38.75  Aligned_cols=32  Identities=19%  Similarity=0.253  Sum_probs=22.9

Q ss_pred             HHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998          109 MVAASANSLNQLFEISNDAKMKRTMRRPLPSGR  141 (414)
Q Consensus       109 l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~  141 (414)
                      +...+-..+||+.|+|-|++..+ +.=|+.-|+
T Consensus       200 l~~~~~~~~~d~~D~e~D~~aG~-~Tlpv~~G~  231 (314)
T PRK07566        200 LGAHGIMTLNDFKSVEGDRQLGL-RSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHHHhHhHHHcCC-cccceeEcH
Confidence            34455688999999999998754 355555554

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=86.65  E-value=21  Score=35.73  Aligned_cols=32  Identities=6%  Similarity=-0.109  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHhhchHHHHHC-CCCccccccc
Q 014998          230 YFWQIPHFMALAYLCRNDYAAG-GYRMISLADA  261 (414)
Q Consensus       230 ~lw~~~h~~~~a~~D~edD~~a-G~ktlav~~G  261 (414)
                      ++...+-...+.+.|+|.|++. ..|.-|+.-|
T Consensus        56 ~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG   88 (295)
T PRK12324         56 CLASSAVYLVNDIRDVEADRLHPTKRNRPIASG   88 (295)
T ss_pred             HHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCC
Confidence            3333344456788999999885 2233444443

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=86.22  E-value=6  Score=38.96  Aligned_cols=39  Identities=15%  Similarity=0.033  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998          102 WTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR  141 (414)
Q Consensus       102 l~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~  141 (414)
                      +..+..++.+.+-..+||..|+|-|++..++ .=|+.-|+
T Consensus       162 ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~-tlpv~~G~  200 (282)
T TIGR01475       162 LLGIGVGFWIAGFDLIYAIQDYEFDRKNGLH-SIPARFGI  200 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhHHHcCCC-chHHHhch
Confidence            3455566667777889999999999988753 66666673

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=86.02  E-value=19  Score=36.01  Aligned_cols=33  Identities=6%  Similarity=-0.186  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHCCCCccccccc
Q 014998          228 ALYFWQIPHFMALAYLCRNDYAAGGYRMISLADA  261 (414)
Q Consensus       228 ~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G  261 (414)
                      ...+-+..-...+.+.|+|.|++.+ +.-|+..|
T Consensus        62 ~~~l~~~~~n~~NDy~D~d~D~~~~-~~Rpi~~G   94 (306)
T TIGR02056        62 SGPCLTGYTQTINDFYDRDIDAINE-PYRPIPSG   94 (306)
T ss_pred             HHHHHHHHHHHHHhHhhhhhhccCC-CCCCCCCC
Confidence            3355566666677889999887665 35555554

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK13591 ubiA prenyltransferase; Provisional

Probab=85.66  E-value=5.4  Score=40.28  Aligned_cols=25  Identities=12%  Similarity=0.239  Sum_probs=18.9

Q ss_pred             HhhccccccccccCCCCCCCCccCCC
Q 014998          116 SLNQLFEISNDAKMKRTMRRPLPSGR  141 (414)
Q Consensus       116 ~iND~~D~eiD~~~~RT~~RPLpsG~  141 (414)
                      .+||+-|.|-|+++.|. .=|+.=|+
T Consensus       197 iindirDiEGDr~~G~k-TLPV~lG~  221 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIK-TLPVSLGE  221 (307)
T ss_pred             HHHHhhhhHhHHHcCCe-eEEEEECH
Confidence            68999999999988652 55555553

>PLN00012 chlorophyll synthetase; Provisional

Probab=85.31  E-value=12  Score=38.91  Aligned_cols=35  Identities=14%  Similarity=0.126  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998          106 GTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR  141 (414)
Q Consensus       106 g~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~  141 (414)
                      ..++...+-..+||+-|+|-|++... +.=|+.-|+
T Consensus       260 ~~~l~~lai~ivnd~~Die~Dr~aG~-~TLpV~~G~  294 (375)
T PLN00012        260 LYSIAGLGIAIVNDFKSIEGDRALGL-QSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHHHHhhhcchhhHHHcCC-cccceeech
Confidence            34456667888999999999998753 355655564

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=84.18  E-value=11  Score=37.12  Aligned_cols=52  Identities=10%  Similarity=0.077  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHH
Q 014998          103 TCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAG  158 (414)
Q Consensus       103 ~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~g  158 (414)
                      ..+...+........||+.|+|-|+++.|. +=|.-=|   .+.+..+...+.+++
T Consensus       173 ~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~-Tl~v~lG---~~~a~~~~~~l~~~~  224 (293)
T PRK06080        173 PALPCGLLIGAVLLANNIRDIETDRENGKN-TLAVRLG---DKNARRLHAALLALA  224 (293)
T ss_pred             HHHHHHHHHHHHHHhcCCCcchhHHHcCCe-eEEeeEC---cHhHHHHHHHHHHHH
Confidence            344445566677889999999999988642 3444334   444444443333333

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=84.16  E-value=14  Score=37.25  Aligned_cols=44  Identities=5%  Similarity=0.053  Sum_probs=27.8

Q ss_pred             HHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHH
Q 014998          109 MVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGV  156 (414)
Q Consensus       109 l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~  156 (414)
                      +..+.....||+-|+|-|+++.|. +-|.-=|   ++.+..+...+.+
T Consensus       185 ll~~~IL~~Nn~rD~e~D~~~Gk~-TL~v~lG---~~~a~~ly~~l~~  228 (304)
T PRK07419        185 LATSLILFCSHFHQVEDDLAAGKR-SPIVRLG---TKRGAQLLPWIVG  228 (304)
T ss_pred             HHHHHHHHHcCCcchhhHHHcCCc-ceeeeec---hHhHHHHHHHHHH
Confidence            455677789999999999998742 3343334   4555444433333

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=83.43  E-value=12  Score=37.34  Aligned_cols=47  Identities=15%  Similarity=0.063  Sum_probs=32.5

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998           94 TIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI  142 (414)
Q Consensus        94 ~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I  142 (414)
                      .++...+ +..+..++....-..+||+.|+|-|+++.+ +.=|+.-|+-
T Consensus       172 ~~~~~~~-ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~-~Tlpv~~G~~  218 (297)
T PRK12871        172 QPDMTAL-LYMVFFYPWTMAHLGLNDFIDLENDRARGM-KSIAVLYGMK  218 (297)
T ss_pred             CCcHHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHcCC-eeeeeeechH
Confidence            3444322 334555666778899999999999999865 3666766764

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=82.93  E-value=16  Score=36.37  Aligned_cols=46  Identities=24%  Similarity=0.234  Sum_probs=31.0

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998           94 TIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR  141 (414)
Q Consensus        94 ~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~  141 (414)
                      ..++... +.++.+++-+.+-..+|++.|+|-|++... +.=|+.-|+
T Consensus       164 ~~~~~~~-~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi-~slpv~~G~  209 (291)
T PRK12874        164 EIPLWSV-FLALGVMFWVAGFDLLYSLQDMEFDKKRGL-HSIPSKFGE  209 (291)
T ss_pred             CCcHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHcCC-CcccHHhhh
Confidence            3454333 334566677778888999999999987754 355555555

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=82.92  E-value=9.9  Score=38.30  Aligned_cols=31  Identities=16%  Similarity=0.114  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHhhccccccccccCCC
Q 014998          101 CWTCTGTMMVAASANSLNQLFEISNDAKMKR  131 (414)
Q Consensus       101 ll~~lg~~l~~aa~~~iND~~D~eiD~~~~R  131 (414)
                      ++..+.+.+..+..+..|++.|.|.|+++.|
T Consensus       179 ll~slp~gil~~~Il~aNNirDie~D~~~gk  209 (303)
T COG1575         179 LLPSLPVGILIANILLANNLRDIEEDIRNGK  209 (303)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchhHHhcCC
Confidence            4555666777788889999999999999985

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=82.66  E-value=21  Score=35.10  Aligned_cols=33  Identities=12%  Similarity=-0.144  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHCCCCccccccc
Q 014998          228 ALYFWQIPHFMALAYLCRNDYAAGGYRMISLADA  261 (414)
Q Consensus       228 ~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G  261 (414)
                      ...+-+..-...+.+.|+|.|++.+ +.-|+..|
T Consensus        46 ~~~l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G   78 (283)
T TIGR01476        46 AGPLGTGFSQSINDYFDRDVDAINE-PQRPIPSG   78 (283)
T ss_pred             HHHHHHHHHHHHHhHhhhCcccCCC-CCCCCCCC
Confidence            3344555556778899999998766 55665554

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=82.28  E-value=15  Score=37.10  Aligned_cols=52  Identities=17%  Similarity=0.075  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHH
Q 014998          104 CTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGT  159 (414)
Q Consensus       104 ~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl  159 (414)
                      .+...+..+.....||+-|+|-|+++.|. +=|.   ++.++.+..+..++.+++.
T Consensus       195 slp~g~l~~~ill~Nn~~D~e~D~~~gk~-TL~v---~lG~~~a~~l~~~l~~~a~  246 (317)
T PRK13387        195 SLPIIFTIANIMLANNLRDLDEDIKNHRY-TLVY---YIGREKGVVLFAILFYASY  246 (317)
T ss_pred             HHHHHHHHHHHHHhcCCccchhHHHcCCe-eeee---eEcHHhHHHHHHHHHHHHH
Confidence            33444555566889999999999998642 3343   3345555555444444443

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=82.16  E-value=14  Score=36.45  Aligned_cols=47  Identities=11%  Similarity=0.118  Sum_probs=32.5

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998           94 TIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI  142 (414)
Q Consensus        94 ~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I  142 (414)
                      .+++.. .+..++.++...+-..+|++.|+|-|++... +.=|+.-|+-
T Consensus       157 ~~~~~~-~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~-~tlpv~~G~~  203 (281)
T TIGR01474       157 DLSTAA-WVLYLANILWTLGYDTIYAMQDKEDDIKIGV-KSTALRFGDN  203 (281)
T ss_pred             CCcHHH-HHHHHHHHHHHHHHHHHHHHhhHHhHHHcCC-CcccHHhhhh
Confidence            344432 2345666777778889999999999998764 3566666743

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=80.37  E-value=26  Score=34.83  Aligned_cols=47  Identities=9%  Similarity=0.002  Sum_probs=31.8

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998           93 STIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR  141 (414)
Q Consensus        93 ~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~  141 (414)
                      +..++..+ +..+..++...+-..+|++.|+|-|++... +.=|+--|.
T Consensus       155 g~~~~~~~-ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv-~sl~v~~G~  201 (284)
T PRK12888        155 GTWSWPAV-LLGLAVGLWIGGFDLIYACQDAEVDRRIGV-RSVPARFGV  201 (284)
T ss_pred             CCCCHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHCCC-cCcchhhCc
Confidence            34555433 445566667778899999999999998753 345555554

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00