Citrus Sinensis ID: 015049

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPKLNSAVVSRC
cccccccccEEEEcccccccccccHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccEEEEccHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHcccccccEEEEEccccccccccccEEEEcccccccccEEEEccHHHHHHHccccccccccccEEEEEEEccccHHHHHHHccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHccc
cccccccEEEEEEEHHHHcccccccHHHHHHHHcccHcHEEccccHHHHHHHHHHHHHcccEEEEEEEEcccccEEcccccccHHccccccEEEEEcHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHccccccccEEEEEcHHHcccccccEEEEEEEEEEccccEEEEccHHHHHHHHccccccccccccEEEEEccHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHccccccEEEccHHHHHHHHHHHHcccccHHHHEEEEEcccccccHHHHHHHHHHHHHHHccccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHccc
MADVVSDYDCAVIDEIQmlgcktrgfsFTRALLGICAnelhlcgdpaavPLIQQILQVtgddvkvqsyerlsplvplnvplgsfsniqtgdcivTFSRHAIYRLKKAIESRGKHLCSivygslppetrtrqatrfndasseFDVLVASDAIGMGLNLNISRIIFSTmkkfdgvelrdltvPEVKQIAGragrygskfpvgevtcldsedlpllhksllepspmlesaglfpnfdLIYMYsrlhpdsslYGILEHFLENAKLSENYFFANCEEVLKVATVidqlplrlhekylfcispvdmnddissqgltqfatnyskkGIVQLreiftpgtlqvpKTQAALRELESIHKVLDLYVWLSFRleesfpdrELAASQKAICSMLIEEFLERLgwqkprvkkvtprpklnsavvsrc
MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQiagragrygskfpVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLErlgwqkprvkkvtprpklnsavvsrc
MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQkprvkkvtprpkLNSAVVSRC
***VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL****************SEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQK********************
***VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLE**************************
MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPKLNSAVVSRC
***VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVK****************
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MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPKLNSAVVSRC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query414 2.2.26 [Sep-21-2011]
Q8IYB8786 ATP-dependent RNA helicas yes no 0.891 0.469 0.419 7e-81
Q80YD1779 ATP-dependent RNA helicas yes no 0.925 0.491 0.412 9e-81
Q5EBA1776 ATP-dependent RNA helicas yes no 0.925 0.493 0.409 1e-80
Q5ZJT0 794 ATP-dependent RNA helicas yes no 0.893 0.465 0.407 1e-79
A4IG62763 ATP-dependent RNA helicas yes no 0.881 0.478 0.397 8e-77
Q9VN03763 ATP-dependent RNA helicas yes no 0.886 0.480 0.393 2e-71
Q295E6762 ATP-dependent RNA helicas yes no 0.874 0.475 0.388 3e-68
Q17828721 ATP-dependent RNA helicas yes no 0.908 0.521 0.385 3e-68
Q61SU7721 ATP-dependent RNA helicas N/A no 0.903 0.518 0.378 7e-68
O94445647 ATP-dependent RNA helicas yes no 0.835 0.534 0.370 6e-59
>sp|Q8IYB8|SUV3_HUMAN ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Homo sapiens GN=SUPV3L1 PE=1 SV=1 Back     alignment and function desciption
 Score =  301 bits (770), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 159/379 (41%), Positives = 237/379 (62%), Gaps = 10/379 (2%)

Query: 1   MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
           M  V + Y+ AVIDEIQM+    RG+++TRALLG+CA E+HLCG+PAA+ L+ +++  TG
Sbjct: 278 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTG 337

Query: 61  DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
           ++V+V+ Y+RL+P+  L+  L S  N++ GDCIV FS++ IY + + IE RG    +++Y
Sbjct: 338 EEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 396

Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
           GSLPP T+  QA +FND +    +LVA+DAIGMGLNL+I RIIF ++ K         EL
Sbjct: 397 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEREL 456

Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
             +T  +  QIAGRAGR+ S+F  GEVT ++ EDL LL + L  P   + +AGL P  + 
Sbjct: 457 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQ 516

Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
           I M++   PD++L  +++ F++ +++   YF  N ++    A +I  +PL L  +Y+FC 
Sbjct: 517 IEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 576

Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
           +P++         L QFA  YS+        LR  +    L  PK    L +LE++H VL
Sbjct: 577 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVL 635

Query: 353 DLYVWLSFRLEESFPDREL 371
           DLY+WLS+R  + FPD  L
Sbjct: 636 DLYLWLSYRFMDMFPDASL 654
Major helicase player in mitochondrial RNA metabolism. Component of the mitochondrial degradosome (mtEXO) complex, that degrades 3' overhang double-stranded RNA with a 3'-to-5' directionality in an ATP-dependent manner. ATPase and ATP-dependent multisubstrate helicase, able to unwind double stranded (ds) DNA and RNA, and RNA/DNA heteroduplexes in the 5'-to-3' direction. Plays a role in the RNA surveillance system in mitochondria; regulates the stability of mature mRNAs, the removal of aberrantly formed mRNAs and the rapid degradation of non coding processing intermediates. Also implicated in recombination and chromatin maintenance pathways. May protect cells from apoptosis. Associates with mitochondrial DNA.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|Q80YD1|SUV3_MOUSE ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Mus musculus GN=Supv3l1 PE=2 SV=1 Back     alignment and function description
>sp|Q5EBA1|SUV3_RAT ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Rattus norvegicus GN=Supv3l1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZJT0|SUV3_CHICK ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Gallus gallus GN=SUPV3L1 PE=2 SV=1 Back     alignment and function description
>sp|A4IG62|SUV3_DANRE ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Danio rerio GN=supv3l1 PE=2 SV=1 Back     alignment and function description
>sp|Q9VN03|SUV3_DROME ATP-dependent RNA helicase SUV3 homolog, mitochondrial OS=Drosophila melanogaster GN=CG9791 PE=2 SV=3 Back     alignment and function description
>sp|Q295E6|SUV3_DROPS ATP-dependent RNA helicase SUV3 homolog, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=GA22038 PE=3 SV=1 Back     alignment and function description
>sp|Q17828|SUV3_CAEEL ATP-dependent RNA helicase SUV3 homolog, mitochondrial OS=Caenorhabditis elegans GN=C08F8.2 PE=3 SV=2 Back     alignment and function description
>sp|Q61SU7|SUV3_CAEBR ATP-dependent RNA helicase SUV3 homolog, mitochondrial OS=Caenorhabditis briggsae GN=CBG06022 PE=3 SV=3 Back     alignment and function description
>sp|O94445|SUV3_SCHPO ATP-dependent RNA helicase suv3, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=suv3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
356538244 565 PREDICTED: ATP-dependent RNA helicase SU 0.995 0.729 0.791 0.0
224111126 571 predicted protein [Populus trichocarpa] 0.973 0.705 0.809 0.0
356495782 600 PREDICTED: ATP-dependent RNA helicase SU 0.995 0.686 0.789 0.0
357480943 570 ATP-dependent RNA helicase SUPV3L1 [Medi 0.985 0.715 0.747 0.0
255552101 547 ATP-dependent RNA and DNA helicase, puta 0.927 0.702 0.784 0.0
449432684 560 PREDICTED: ATP-dependent RNA helicase SU 0.983 0.726 0.745 0.0
225432734 572 PREDICTED: ATP-dependent RNA helicase SU 0.973 0.704 0.776 1e-180
242032983 542 hypothetical protein SORBIDRAFT_01g00831 0.978 0.747 0.725 1e-176
357115310 572 PREDICTED: ATP-dependent RNA helicase SU 0.978 0.708 0.718 1e-175
414872750 577 TPA: hypothetical protein ZEAMMB73_05455 0.966 0.693 0.722 1e-175
>gi|356538244|ref|XP_003537614.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/413 (79%), Positives = 371/413 (89%), Gaps = 1/413 (0%)

Query: 1   MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
           M DV +DY CAVIDEIQM+GC TRG+SFTRALLGI A+ELHLCGDPAAVPLIQ+I+++TG
Sbjct: 148 MVDVSADYQCAVIDEIQMIGCITRGYSFTRALLGIAADELHLCGDPAAVPLIQEIMKITG 207

Query: 61  DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
           D+++VQ YERLSPLVPL VPLGSFSN++ GDCIVTFSR  IY+LKK IE  GKHLCS+VY
Sbjct: 208 DEIEVQFYERLSPLVPLKVPLGSFSNVRNGDCIVTFSRQEIYKLKKRIEKEGKHLCSVVY 267

Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
           GSLPPETRTRQA+ FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG E+RDLTV
Sbjct: 268 GSLPPETRTRQASMFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGFEVRDLTV 327

Query: 181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
           PE+KQIAGRAGRYGS FPVGEVTC+D EDLPLLH SL  PSP+LE AG+ P FDL+YMYS
Sbjct: 328 PEIKQIAGRAGRYGSNFPVGEVTCMDEEDLPLLHSSLNSPSPILERAGILPTFDLMYMYS 387

Query: 241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
           RLHP +  Y IL HFL+NAKLSENYF  NCE++LKVA VID+LPL LHEKYLFCISP DM
Sbjct: 388 RLHPRNGFYQILAHFLDNAKLSENYFIVNCEQLLKVAAVIDELPLGLHEKYLFCISPADM 447

Query: 301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
           +D+ISSQGL QFA NY+KKG+V+LREIFTPG+L+VPKT AAL+ELESIHKVLDLYVWLSF
Sbjct: 448 DDEISSQGLAQFAENYAKKGLVRLREIFTPGSLKVPKTPAALKELESIHKVLDLYVWLSF 507

Query: 361 RLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPKLNSAVVSR 413
           RLEESFPD ELAASQKAICSMLIEEFLERLGWQKP  +++ P  K++S+++S+
Sbjct: 508 RLEESFPDHELAASQKAICSMLIEEFLERLGWQKPMARRL-PSHKMSSSLLSQ 559

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224111126|ref|XP_002315757.1| predicted protein [Populus trichocarpa] gi|222864797|gb|EEF01928.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356495782|ref|XP_003516752.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|357480943|ref|XP_003610757.1| ATP-dependent RNA helicase SUPV3L1 [Medicago truncatula] gi|355512092|gb|AES93715.1| ATP-dependent RNA helicase SUPV3L1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255552101|ref|XP_002517095.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis] gi|223543730|gb|EEF45258.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449432684|ref|XP_004134129.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Cucumis sativus] gi|449504169|ref|XP_004162271.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225432734|ref|XP_002279035.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|242032983|ref|XP_002463886.1| hypothetical protein SORBIDRAFT_01g008310 [Sorghum bicolor] gi|241917740|gb|EER90884.1| hypothetical protein SORBIDRAFT_01g008310 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|357115310|ref|XP_003559433.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|414872750|tpg|DAA51307.1| TPA: hypothetical protein ZEAMMB73_054551 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
TAIR|locus:2130235571 ATSUV3 [Arabidopsis thaliana ( 0.937 0.679 0.731 1.2e-154
TAIR|locus:2151911776 AT5G39840 [Arabidopsis thalian 0.925 0.493 0.407 5.4e-79
UNIPROTKB|Q8IYB8786 SUPV3L1 "ATP-dependent RNA hel 0.891 0.469 0.422 5e-76
UNIPROTKB|F1SUG1789 SUPV3L1 "Uncharacterized prote 0.910 0.477 0.419 1e-75
MGI|MGI:2441711779 Supv3l1 "suppressor of var1, 3 0.925 0.491 0.414 1e-75
RGD|1305565776 Supv3l1 "suppressor of var1, 3 0.925 0.493 0.412 1.3e-75
UNIPROTKB|F1PNI9845 SUPV3L1 "Uncharacterized prote 0.925 0.453 0.397 2.5e-74
UNIPROTKB|E1BTJ2 796 SUPV3L1 "ATP-dependent RNA hel 0.910 0.473 0.404 3.1e-74
UNIPROTKB|F1NMV4 794 SUPV3L1 "ATP-dependent RNA hel 0.910 0.474 0.404 3.1e-74
UNIPROTKB|Q5ZJT0 794 SUPV3L1 "ATP-dependent RNA hel 0.910 0.474 0.404 3.1e-74
TAIR|locus:2130235 ATSUV3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1508 (535.9 bits), Expect = 1.2e-154, P = 1.2e-154
 Identities = 284/388 (73%), Positives = 332/388 (85%)

Query:     1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
             MADV S YDCA+IDEIQM+GCK RGF+FTRALLGI A+ELHLCGDPA VPL++ IL+VTG
Sbjct:   163 MADVTSVYDCAIIDEIQMVGCKQRGFAFTRALLGIAADELHLCGDPAVVPLVEDILKVTG 222

Query:    61 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
             DDV+V +YERLSPLVPL VP+ S S+I+TGDC+VTFSR  IY  KK IE  GKHLCS+VY
Sbjct:   223 DDVEVHTYERLSPLVPLKVPVSSVSSIKTGDCLVTFSRKDIYAYKKTIERAGKHLCSVVY 282

Query:   121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 180
             GSLPPETRT QATRFND +++FDVLVASDAIGMGLNLNISRIIFST++K+DG E RDLTV
Sbjct:   283 GSLPPETRTAQATRFNDETNDFDVLVASDAIGMGLNLNISRIIFSTLQKYDGSETRDLTV 342

Query:   181 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 240
              E+KQIAGRAGR+ SKFP+GEVTCL  EDLPLLH SL  PSP+LE AGLFP FDL+  YS
Sbjct:   343 SEIKQIAGRAGRFQSKFPIGEVTCLHKEDLPLLHSSLKSPSPILERAGLFPTFDLLSGYS 402

Query:   241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 300
             + HP   LY ILEHF+ENAKLS NYF +N E+++KVA ++D+LPL L EKYLF +SPVD+
Sbjct:   403 QAHPTHGLYQILEHFVENAKLSSNYFISNVEDMMKVAAIVDELPLGLQEKYLFVVSPVDV 462

Query:   301 NDDISSQGLTQFATNYSKKGIVQLREIFTPGTLQVPKTQAALRELESIHKVLDLYVWLSF 360
             ND+IS QGL QFA N+SK GIV+LREI  P  ++VPKT   L+ELESIHKVLDLYVWLS 
Sbjct:   463 NDEISGQGLAQFAQNFSKAGIVRLREILAPDRVKVPKTPTELKELESIHKVLDLYVWLSL 522

Query:   361 RLEESFPDRELAASQKAICSMLIEEFLE 388
             RLE+SFPDRE+AASQK+IC++LIE+FLE
Sbjct:   523 RLEDSFPDREVAASQKSICNLLIEQFLE 550
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA
GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA
GO:0016070 "RNA metabolic process" evidence=IDA
GO:0009561 "megagametogenesis" evidence=IMP
GO:0009555 "pollen development" evidence=IMP
TAIR|locus:2151911 AT5G39840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IYB8 SUPV3L1 "ATP-dependent RNA helicase SUPV3L1, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SUG1 SUPV3L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2441711 Supv3l1 "suppressor of var1, 3-like 1 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305565 Supv3l1 "suppressor of var1, 3-like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PNI9 SUPV3L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BTJ2 SUPV3L1 "ATP-dependent RNA helicase SUPV3L1, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NMV4 SUPV3L1 "ATP-dependent RNA helicase SUPV3L1, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJT0 SUPV3L1 "ATP-dependent RNA helicase SUPV3L1, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.13LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
pfam1251349 pfam12513, SUV3_C, Mitochondrial degradasome RNA h 3e-16
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 5e-13
smart0049082 smart00490, HELICc, helicase superfamily c-termina 9e-12
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 5e-11
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 1e-10
COG4581 1041 COG4581, COG4581, Superfamily II RNA helicase [DNA 5e-06
COG1202830 COG1202, COG1202, Superfamily II helicase, archaea 7e-05
COG1204 766 COG1204, COG1204, Superfamily II helicase [General 5e-04
PRK02362 737 PRK02362, PRK02362, ski2-like helicase; Provisiona 0.004
>gnl|CDD|204947 pfam12513, SUV3_C, Mitochondrial degradasome RNA helicase subunit C terminal Back     alignment and domain information 
 Score = 71.8 bits (177), Expect = 3e-16
 Identities = 30/49 (61%), Positives = 36/49 (73%)

Query: 342 LRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL 390
           L+ELES+HKVLDLY+WLS+R  + FPDRELA   K +    IEE LER 
Sbjct: 1   LQELESLHKVLDLYLWLSYRFPDLFPDRELAEELKKLVEEKIEEILERQ 49

This domain family is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. The family is found in association with pfam00271. The yeast mitochondrial degradosome (mtEXO) is an NTP-dependent exoribonuclease involved in mitochondrial RNA metabolism. mtEXO is made up of two subunits: an RNase (DSS1) and an RNA helicase (SUV3). These co-purify with mitochondrial ribosomes. Length = 49
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 414
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 100.0
PRK01172674 ski2-like helicase; Provisional 99.95
PRK02362 737 ski2-like helicase; Provisional 99.95
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 99.94
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 99.93
COG1204 766 Superfamily II helicase [General function predicti 99.93
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 99.93
PRK00254 720 ski2-like helicase; Provisional 99.93
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.92
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.92
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.92
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.92
PRK13767 876 ATP-dependent helicase; Provisional 99.92
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.91
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.91
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.91
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 99.91
COG1202830 Superfamily II helicase, archaea-specific [General 99.91
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.91
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.91
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.9
PTZ00110545 helicase; Provisional 99.9
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.9
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.9
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.9
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 99.9
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.9
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.9
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 99.9
PTZ00424401 helicase 45; Provisional 99.89
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 99.89
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 99.89
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 99.89
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.89
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 99.88
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.88
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.87
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 99.86
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 99.85
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.85
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 99.85
PHA02653675 RNA helicase NPH-II; Provisional 99.84
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 99.84
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.83
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.83
KOG0343 758 consensus RNA Helicase [RNA processing and modific 99.83
KOG0351 941 consensus ATP-dependent DNA helicase [Replication, 99.82
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 99.82
KOG0950 1008 consensus DNA polymerase theta/eta, DEAD-box super 99.81
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.8
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.8
PRK106891147 transcription-repair coupling factor; Provisional 99.8
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.8
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.8
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.79
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 99.78
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.77
KOG4284 980 consensus DEAD box protein [Transcription] 99.76
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.76
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.76
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.76
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.76
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 99.75
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 99.75
PF1251349 SUV3_C: Mitochondrial degradasome RNA helicase sub 99.73
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.72
KOG0327397 consensus Translation initiation factor 4F, helica 99.71
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.7
KOG0346569 consensus RNA helicase [RNA processing and modific 99.7
KOG0924 1042 consensus mRNA splicing factor ATP-dependent RNA h 99.7
PHA02558501 uvsW UvsW helicase; Provisional 99.68
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.68
KOG0347731 consensus RNA helicase [RNA processing and modific 99.65
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.65
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.63
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.62
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.58
KOG0334997 consensus RNA helicase [RNA processing and modific 99.58
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.57
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 99.54
smart0049082 HELICc helicase superfamily c-terminal domain. 99.53
PRK04914 956 ATP-dependent helicase HepA; Validated 99.53
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.5
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.5
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.48
KOG0925 699 consensus mRNA splicing factor ATP-dependent RNA h 99.48
PRK14701 1638 reverse gyrase; Provisional 99.47
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.47
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.46
PRK05298652 excinuclease ABC subunit B; Provisional 99.45
PRK09694878 helicase Cas3; Provisional 99.41
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.41
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.4
PRK09401 1176 reverse gyrase; Reviewed 99.4
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.37
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 99.37
COG1205 851 Distinct helicase family with a unique C-terminal 99.35
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.33
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.32
PRK13766773 Hef nuclease; Provisional 99.31
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.3
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.28
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.26
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.25
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.25
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 99.2
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.18
PRK05580679 primosome assembly protein PriA; Validated 99.17
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.15
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.12
KOG0920 924 consensus ATP-dependent RNA helicase A [RNA proces 99.09
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 98.96
KOG0354746 consensus DEAD-box like helicase [General function 98.93
PRK12904830 preprotein translocase subunit SecA; Reviewed 98.92
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 98.9
PRK13107 908 preprotein translocase subunit SecA; Reviewed 98.84
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 98.65
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 98.6
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 98.56
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 98.23
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 98.02
COG1198730 PriA Primosomal protein N' (replication factor Y) 98.0
COG4096 875 HsdR Type I site-specific restriction-modification 98.0
PRK12326764 preprotein translocase subunit SecA; Reviewed 97.98
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 97.97
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 97.77
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 97.76
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 97.68
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 97.63
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 97.59
KOG1123776 consensus RNA polymerase II transcription initiati 97.56
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 97.53
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 97.4
KOG0385 971 consensus Chromatin remodeling complex WSTF-ISWI, 97.14
KOG0387923 consensus Transcription-coupled repair protein CSB 97.06
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 97.05
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 96.97
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 96.92
CHL00122 870 secA preprotein translocase subunit SecA; Validate 96.8
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 96.74
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 96.54
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 96.54
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 96.52
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 96.19
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 96.02
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 95.95
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 95.92
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 95.92
smart00492141 HELICc3 helicase superfamily c-terminal domain. 95.67
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 95.26
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 95.03
COG4889 1518 Predicted helicase [General function prediction on 94.38
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 94.13
smart00491142 HELICc2 helicase superfamily c-terminal domain. 94.07
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 94.04
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 93.99
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 93.95
KOG0386 1157 consensus Chromatin remodeling complex SWI/SNF, co 93.89
PF13871278 Helicase_C_4: Helicase_C-like 93.34
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 92.55
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 92.49
smart00487201 DEXDc DEAD-like helicases superfamily. 92.09
PRK05580 679 primosome assembly protein PriA; Validated 91.1
TIGR00595 505 priA primosomal protein N'. All proteins in this f 90.91
PRK14873665 primosome assembly protein PriA; Provisional 89.27
KOG1002791 consensus Nucleotide excision repair protein RAD16 89.15
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 88.87
TIGR00643630 recG ATP-dependent DNA helicase RecG. 87.1
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 86.83
KOG4439901 consensus RNA polymerase II transcription terminat 86.47
PRK14873 665 primosome assembly protein PriA; Provisional 86.15
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 85.32
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 84.47
PRK14701 1638 reverse gyrase; Provisional 82.25
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 81.54
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 80.49
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-90  Score=687.17  Aligned_cols=392  Identities=46%  Similarity=0.782  Sum_probs=377.9

Q ss_pred             CCCcCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCcccccc
Q 015049            1 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVP   80 (414)
Q Consensus         1 m~~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~~~   80 (414)
                      |.+..+.|+|+||||||||.|++|||+||++|+|+.|+++|+||+++++++++++++.+|++++|+.|+|++||.+....
T Consensus       269 M~sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~TGd~vev~~YeRl~pL~v~~~~  348 (700)
T KOG0953|consen  269 MVSVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKMTGDDVEVREYERLSPLVVEETA  348 (700)
T ss_pred             EeecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhhcCCeeEEEeecccCcceehhhh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cccccccCCCCEEEEecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCcc
Q 015049           81 LGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS  160 (414)
Q Consensus        81 l~~l~~i~~g~~Iv~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~  160 (414)
                      ++.++++++|||||||||++++.++..+++.|.++|+++||+|||++|.+|+.+||+++++++|||||||+|||+|++|+
T Consensus       349 ~~sl~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~Ir  428 (700)
T KOG0953|consen  349 LGSLSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLNIR  428 (700)
T ss_pred             hhhhccCCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccccee
Confidence            89999999999999999999999999999999988999999999999999999999988899999999999999999999


Q ss_pred             EEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHHHHHhhCCCCcccccCCCCCCHHHHHHHH
Q 015049          161 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS  240 (414)
Q Consensus       161 ~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~l~~~l~~~~~~i~~~~i~p~~~~l~~~~  240 (414)
                      ||||++..||+|.+..+++.++++|++|||||+|.+++.|+||++..+|++.+++.++.+.+++..+++.|+.++++.|+
T Consensus       429 RiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eDL~~L~~~l~~p~epi~~agl~pt~eqie~fa  508 (700)
T KOG0953|consen  429 RIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSEDLKLLKRILKRPVEPIKNAGLWPTDEQIELFA  508 (700)
T ss_pred             EEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhhHHHHHHHHhCCchHHHhccCCccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHhcccCCCccccCHHHHHHHHHhhccCCCCHHHHHHhhcccCCCCChHHHHHHHHHHHHHhhcC
Q 015049          241 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKG  320 (414)
Q Consensus       241 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  320 (414)
                      .+.|+.+++.+++.|...++.+..|++|+.+++.++|++|++++|++++||.||+||+|.++|.++..|.+||+.||++.
T Consensus       509 ~~~Pd~t~snLld~f~~~~~~~~~fflc~~~~~k~va~liehi~L~l~dr~~fc~aPvnk~~p~v~~~f~kfa~~~s~~~  588 (700)
T KOG0953|consen  509 YHLPDATPSNLLDIFVKLCEVDGLFFLCNLDDFKFVAELIEHIELPLKDRYKFCTAPVNKKMPRVCSAFLKFARQYSQNE  588 (700)
T ss_pred             HhCCCccHHHHHHHHHHHHccCCceEEecchhHHHHHHHHHhCCcchhhhheeecCcccccCchHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccc---cCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015049          321 IVQLREI---FTPGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQ  393 (414)
Q Consensus       321 ~~~~~~~---~~~~~~~~~~~~~~l~~le~~~~~~~~y~wls~r~~~~f~~~~~~~~~~~~~~~~i~~~l~~~~~~  393 (414)
                      ++++..+   +.+| ...|++..+|..||++|+++++|+|||+|||++|||.+.|++++..++++|.+.+.++.|.
T Consensus       589 ~l~~~~l~~~~~~p-~~~p~t~~~L~~LEs~h~il~lYmWlS~Rfpd~fpd~~~vrd~~~~ld~ii~egv~~~~k~  663 (700)
T KOG0953|consen  589 PLTFLWLKFNLGWP-NKIPKTIYELEDLESLHDILDLYMWLSNRFPDMFPDAESVRDLKKELDEIIQEGVSKLTKL  663 (700)
T ss_pred             cccHHHHHHhhcCC-CCCCccHHHHHHHHHHHHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9885432   2222 2468899999999999999999999999999999999999999999999999999987665

>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF12513 SUV3_C: Mitochondrial degradasome RNA helicase subunit C terminal; InterPro: IPR022192 This domain family is found in bacteria and eukaryotes, and is approximately 50 amino acids in length Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
3rc8_A677 Human Mitochondrial Helicase Suv3 In Complex With S 5e-82
3rc3_A677 Human Mitochondrial Helicase Suv3 Length = 677 1e-78
4a4z_A 997 Crystal Structure Of The S. Cerevisiae Dexh Helicas 3e-08
2xgj_A 1010 Structure Of Mtr4, A Dexh Helicase Involved In Nucl 4e-05
3l9o_A 1108 Crystal Structure Of Mtr4, A Co-Factor Of The Nucle 4e-05
2p6r_A 702 Crystal Structure Of Superfamily 2 Helicase Hel308 8e-05
>pdb|3RC8|A Chain A, Human Mitochondrial Helicase Suv3 In Complex With Short Rna Fragment Length = 677 Back     alignment and structure 
Iteration: 1

 Score =  301 bits (770), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 159/379 (41%), Positives = 237/379 (62%), Gaps = 10/379 (2%)
Query: 1   MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
           M  V + Y+ AVIDEIQM+    RG+++TRALLG+CA E+HLCG+PAA+ L+ +++  TG
Sbjct: 233 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTG 292
Query: 61  DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
           ++V+V+ Y+RL+P+  L+  L S  N++ GDCIV FS++ IY + + IE RG    +++Y
Sbjct: 293 EEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 351
Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVEL 175
           GSLPP T+  QA +FND +    +LVA+DAIGMGLNL+I RIIF ++ K         EL
Sbjct: 352 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEREL 411
Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
             +T  +  QIAGRAGR+ S+F  GEVT ++ EDL LL + L  P   + +AGL P  + 
Sbjct: 412 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQ 471
Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
           I M++   PD++L  +++ F++ +++   YF  N ++    A +I  +PL L  +Y+FC 
Sbjct: 472 IEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 531
Query: 296 SPVDMNDDISSQGLTQFATNYSKK---GIVQLREIFTPGTLQVPKTQAALRELESIHKVL 352
           +P++         L QFA  YS+        LR  +    L  PK    L +LE++H VL
Sbjct: 532 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRR-YIKWPLLPPKNIKDLMDLEAVHDVL 590
Query: 353 DLYVWLSFRLEESFPDREL 371
           DLY+WLS+R  + FPD  L
Sbjct: 591 DLYLWLSYRFMDMFPDASL 609
>pdb|3RC3|A Chain A, Human Mitochondrial Helicase Suv3 Length = 677 Back     alignment and structure
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 Back     alignment and structure
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 Back     alignment and structure
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 Back     alignment and structure
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 1e-113
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 2e-09
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 3e-09
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 3e-09
2p6r_A 702 Afuhel308 helicase; protein-DNA complex, SF2 helic 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 5e-08
2va8_A 715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 1e-06
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 3e-05
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 1e-04
1yks_A440 Genome polyprotein [contains: flavivirin protease 4e-04
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 Back     alignment and structure
 Score =  344 bits (884), Expect = e-113
 Identities = 158/412 (38%), Positives = 245/412 (59%), Gaps = 8/412 (1%)

Query: 1   MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 60
           M  V + Y+ AVIDEIQM+    RG+++TRALLG+CA E+HLCG+PAA+ L+ +++  TG
Sbjct: 233 MCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTG 292

Query: 61  DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 120
           ++V+V+ Y+RL+P+  L+  L S  N++ GDCIV FS++ IY + + IE RG    +++Y
Sbjct: 293 EEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIY 351

Query: 121 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFD-----GVEL 175
           GSLPP T+  QA +FND +    +LVA+DAIGMGLNL+I RIIF ++ K         EL
Sbjct: 352 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEREL 411

Query: 176 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 235
             +T  +  QIAGRAGR+ S+F  GEVT ++ EDL LL + L  P   + +AGL P  + 
Sbjct: 412 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQ 471

Query: 236 IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 295
           I M++   PD++L  +++ F++ +++   YF  N ++    A +I  +PL L  +Y+FC 
Sbjct: 472 IEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCT 531

Query: 296 SPVDMNDDISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVLD 353
           +P++         L QFA  YS+   +    +  +    L  PK    L +LE++H VLD
Sbjct: 532 APINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLD 591

Query: 354 LYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERLGWQKPRVKKVTPRPK 405
           LY+WLS+R  + FPD  L    +     +I++ +  +       +       
Sbjct: 592 LYLWLSYRFMDMFPDASLIRDLQKELDGIIQDGVHNITKLIKMSETHKLLNL 643
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 100.0
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.93
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 99.93
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 99.93
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 99.93
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.92
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 99.92
2p6r_A 702 Afuhel308 helicase; protein-DNA complex, SF2 helic 99.92
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 99.91
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 99.91
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 99.91
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 99.9
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 99.9
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 99.89
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 99.89
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 99.89
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 99.89
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 99.89
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 99.89
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 99.89
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 99.89
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 99.88
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 99.88
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 99.85
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.85
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 99.85
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 99.85
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 99.83
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.83
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.83
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.83
1yks_A440 Genome polyprotein [contains: flavivirin protease 99.82
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 99.82
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.81
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.81
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 99.81
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.8
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 99.79
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 99.79
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.79
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.79
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.78
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 99.78
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 99.78
4gl2_A699 Interferon-induced helicase C domain-containing P; 99.76
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.61
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 99.74
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 99.74
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 99.72
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 99.72
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.71
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 99.7
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.69
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 99.69
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 99.69
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.69
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 99.68
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 99.66
3h1t_A590 Type I site-specific restriction-modification syst 99.66
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 99.66
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 99.65
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 99.58
3jux_A822 Protein translocase subunit SECA; protein transloc 99.49
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 99.47
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 99.46
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 99.44
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.38
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.34
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 99.28
2w00_A 1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.18
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 97.25
2ipc_A997 Preprotein translocase SECA subunit; nucleotide bi 97.15
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 96.17
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 95.87
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 95.86
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 95.71
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 95.54
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 95.51
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 95.49
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 95.4
3bor_A237 Human initiation factor 4A-II; translation initiat 94.94
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 94.88
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 94.86
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 94.81
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 94.61
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 94.34
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 92.9
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 92.83
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 92.18
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 88.73
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 87.85
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 87.85
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 86.13
3b6e_A216 Interferon-induced helicase C domain-containing P; 80.36
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
Probab=100.00  E-value=5.1e-62  Score=519.98  Aligned_cols=388  Identities=41%  Similarity=0.742  Sum_probs=353.2

Q ss_pred             CCcCCCcCEEEEecccccCCCCcchhHHHHHhCCCCCcEEEEecCCChHHHHHHHHHcCCceEEeeccccCCCccccccc
Q 015049            2 ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL   81 (414)
Q Consensus         2 ~~~~~~v~~vVIDE~h~i~d~~rG~~~~~~l~~l~a~~i~l~g~~~~~~~i~~l~~~~~~~~~v~~~~r~~pl~~~~~~l   81 (414)
                      .++.+.++++||||+|++.|.+||++|+.++.++++..+++++.+++.+.++.+....+..+.+..+.|..++......+
T Consensus       234 ~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~v~~~~r~~~l~~~~~~l  313 (677)
T 3rc3_A          234 CSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHAL  313 (677)
T ss_dssp             CCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEEEEECCCSSCEEECSSCC
T ss_pred             hhhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceEEEEeeecchHHHHHHHH
Confidence            45678899999999999999999999999999999889999999999999999999999999999999999988877766


Q ss_pred             ccccccCCCCEEEEecHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhhCCCCcccEEEEcCcccccccCCccE
Q 015049           82 GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR  161 (414)
Q Consensus        82 ~~l~~i~~g~~Iv~fsr~~~~~l~~~L~~~~~~~v~~ihg~L~~e~R~~~~~~F~~g~~~~~VLVaTdal~~Glnl~i~~  161 (414)
                      ..+..+.+|++|||+|+++++.+++.|++.+. +++++||+|++++|..+++.|++++++++||||||++++|||+++++
T Consensus       314 ~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~-~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi~v~~  392 (677)
T 3rc3_A          314 ESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGL-ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRR  392 (677)
T ss_dssp             CSGGGCCTTEEEECSSHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCCCBSE
T ss_pred             HHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCC-CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCcCccE
Confidence            66777788998888899999999999999887 89999999999999999999999433899999999999999999999


Q ss_pred             EEEccccccC----C-cccccCCHHHHHhhhcccCCCCCCCCceEEEEecCCCHHHHHHhhCCCCcccccCCCCCCHHHH
Q 015049          162 IIFSTMKKFD----G-VELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI  236 (414)
Q Consensus       162 VI~~~~~k~d----g-~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~d~~~l~~~l~~~~~~i~~~~i~p~~~~l  236 (414)
                      ||+++.++|+    | ...+|++.++|+||+|||||.|.+.+.|.|+.+..++.+.+++.+....+++.++++.|+..++
T Consensus       393 VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~l  472 (677)
T 3rc3_A          393 IIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQI  472 (677)
T ss_dssp             EEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHHHH
T ss_pred             EEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhccCCChHHHH
Confidence            9999999873    2 2356899999999999999999764469999999999889999999999999999999999999


Q ss_pred             HHHHhcCCCchHHHHHHHHHHhcccCCCccccCHHHHHHHHHhhccCCCCHHHHHHhhcccCCCCChHHHHHHHHHHHHH
Q 015049          237 YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNY  316 (414)
Q Consensus       237 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  316 (414)
                      +.++..++...+.++++.+.....++..|++++++++.++++++++++|+++++|.||++|++.+++.++++|..|++.|
T Consensus       473 ~~~~~~l~~~~l~ell~~l~~~~~vd~~f~~~~l~~~~~la~~l~~~~L~~~~~~~f~~aP~~~~~~~~~~~~~~~~~~~  552 (677)
T 3rc3_A          473 EMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQY  552 (677)
T ss_dssp             HHHHHHSTTSCHHHHHHHHHHHCBCCTTEEECCCHHHHHHHHHTTTSCCCHHHHHHHHHSCCCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhccCCcchHHHHHHHHHHhhcccchhhccchHHHHHHHHHHhhCCCCHHHHhheEeCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCccccccccC--CCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 015049          317 SKKGIVQLREIFT--PGTLQVPKTQAALRELESIHKVLDLYVWLSFRLEESFPDRELAASQKAICSMLIEEFLERL  390 (414)
Q Consensus       317 ~~~~~~~~~~~~~--~~~~~~~~~~~~l~~le~~~~~~~~y~wls~r~~~~f~~~~~~~~~~~~~~~~i~~~l~~~  390 (414)
                      ++++++++..+..  +.+...+.+..+|..||++|+++++|+|||||||++|||.+.|.++|..|+.+|++.|.++
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~y~wls~r~~~~f~~~~~~~~~~~~~~~~i~~~~~~~  628 (677)
T 3rc3_A          553 SRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKELDGIIQDGVHNI  628 (677)
T ss_dssp             HTTCCCCHHHHHHHTTSSCCCCSSHHHHHHHHHHHHHHHHHHHHHTTCTTTSTTHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HcCCCCCHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988764421  2223457788899999999999999999999999999999999999999999999999985
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 414
d1yksa2299 c.37.1.14 (A:325-623) YFV helicase domain {Yellow 3e-08
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 4e-06
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 1e-05
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

 Score = 52.7 bits (126), Expect = 3e-08
 Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 28/174 (16%)

Query: 93  IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 152
               S  A   +  ++   GK +  ++                     + D ++A+D   
Sbjct: 41  WFLPSIRAANVMAASLRKAGKSVV-VLNRKTFEREYPT------IKQKKPDFILATDIAE 93

Query: 153 MGLNLNISRII----------FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 202
           MG NL + R++              +K        ++     Q  GR GR  ++      
Sbjct: 94  MGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYY 153

Query: 203 TCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFL 256
               + +    H   LE S +L++           M  R    + LYG+     
Sbjct: 154 YSEPTSENNAHHVCWLEASMLLDN-----------MEVRGGMVAPLYGVEGTKT 196
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.88
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.87
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.86
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.86
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.85
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.85
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.84
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.84
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.83
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.83
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.78
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.78
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.64
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.58
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.57
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.54
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.54
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 99.52
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.46
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 98.95
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.92
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.59
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 97.12
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 96.72
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 96.49
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 96.31
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 96.06
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 96.03
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 95.96
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 95.91
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 95.42
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 94.46
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 94.01
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 93.72
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 92.16
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 91.65
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 91.46
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 91.27
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 90.57
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 87.89
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 87.37
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.88  E-value=9e-23  Score=184.66  Aligned_cols=129  Identities=24%  Similarity=0.371  Sum_probs=106.7

Q ss_pred             CCCEEEEe-cHHHHHHHHHHHHHcC-----------------------------CCeEEEecCCCCHHHHHHHHHHhhCC
Q 015049           89 TGDCIVTF-SRHAIYRLKKAIESRG-----------------------------KHLCSIVYGSLPPETRTRQATRFNDA  138 (414)
Q Consensus        89 ~g~~Iv~f-sr~~~~~l~~~L~~~~-----------------------------~~~v~~ihg~L~~e~R~~~~~~F~~g  138 (414)
                      .+.+|||+ ||+.|+.++..|.+..                             ..++++|||+|++++|..+++.|++|
T Consensus        40 ~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f~~g  119 (201)
T d2p6ra4          40 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG  119 (201)
T ss_dssp             TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred             CCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHHhCC
Confidence            45566655 9999999888876411                             12589999999999999999999998


Q ss_pred             CCcccEEEEcCcccccccCCccEEEEccccccCCcccccCCHHHHHhhhcccCCCCCCCCceEEEEecCC-CHH-HHHHh
Q 015049          139 SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLP-LLHKS  216 (414)
Q Consensus       139 ~~~~~VLVaTdal~~Glnl~i~~VI~~~~~k~dg~~~~~ls~~~~~QraGRAGR~g~~~~~G~v~~~~~~-d~~-~l~~~  216 (414)
                        .++|||||+++++|||+|...||+.+..+|||... +.++.+|+||+|||||.|.+ ..|.++.+... +.. .++++
T Consensus       120 --~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~-~~~~~~~~q~~GRAGR~g~~-~~G~~~l~~~~~~~~~~~k~~  195 (201)
T d2p6ra4         120 --NIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSK-RIKVSEYKQMAGRAGRPGMD-ERGEAIIIVGKRDREIAVKRY  195 (201)
T ss_dssp             --SCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEE-ECCHHHHHHHHTTBSCTTTC-SCEEEEEECCGGGHHHHHHTT
T ss_pred             --CceEEEechHHHhhcCCCCceEEEecceeccCCcC-CCCHHHHHHHhcccCCCCCC-CeeEEEEEeCCCChHHHHHHH
Confidence              99999999999999999999999999999997654 67999999999999999986 67888776544 333 46777


Q ss_pred             hCCCC
Q 015049          217 LLEPS  221 (414)
Q Consensus       217 l~~~~  221 (414)
                      +.+++
T Consensus       196 ~~~~p  200 (201)
T d2p6ra4         196 IFGEP  200 (201)
T ss_dssp             TSSCC
T ss_pred             hccCC
Confidence            77654
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure