Citrus Sinensis ID: 015052

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----

MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAVAGSLFSRIPICGLP

cccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHccccccccHHHHHHccccccccccHHHHHHHHHcccccccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccEEEEEEcccHHHHHHHHHHHHcccccccccccccccEEEEEccccccccccEEEEccccEEEEEEEccccccccccccccccEEcccccccccEEEEEEEcccccccEEEEccccccc

cccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHcccEEEHHHcHHHHHHHHccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccEEccccEccccccHHHcccccccccccccccHEEEcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHcccccEEEEEEEcccHHHHHHHHHHHcccccEEcccccccccEEEEEcccccccccEEEEEEcccEEEEEEEcccccccccccccccccEEEEEEEEccEEEEEEEEEHHHccEEEEEEEcccc

mlekmetvDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQnlglngrtdpesfkscvplvthedlqpyiqriidgdispiltgkpittisrssgttqgkpkflpfndELMETTLQIFRTSYafrnrefpigkgkALQFIYgskqsktkgglnagtattnvyrsSTFKAEMKAMqsqccspdevifgpdfhQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKilkpnpelaDLIHKKcsglsnwyglipelfpnakylsgiMTGSMEHYLKKLRHYagdlplmsadygssegwiganvnpslppelatfavlpnigyfefipqrlgnlesqvlciepkpvgltevkvgEEYEIIVTNVAVAgslfsripicglp

mlekmetvdvdelieefetitkdaeRIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPIttisrssgttqgkPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKqsktkgglnagtatTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNvavagslfsripicglp

************LIEEFETIT**********LRKILE***SAEYLQNLGLNGRT**ESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTI***********KFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGS**************TTNVYR***F******MQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAVAGSLFSRIPICG**

*LEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISR**********FLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAVAGSLFSRIPICGL*

MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKA*********CSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAVAGSLFSRIPICGLP

*LEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAVAGSLFSRIPICGLP

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MLEKMETVDxxxxxxxxxxxxxxxxxxxxxTLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAVAGSLFSRIPICGLP

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		414	2.2.26 [Sep-21-2011]
Q6I581		581	Probable indole-3-acetic	yes	no	0.954	0.679	0.7	1e-173
Q9SKE2		575	Jasmonic acid-amido synth	yes	no	0.949	0.683	0.659	1e-157
Q5NAZ7		462	Probable indole-3-acetic	no	no	0.958	0.859	0.622	1e-145
Q53P49		613	Probable indole-3-acetic	no	no	0.958	0.647	0.514	1e-122
O22190		595	Indole-3-acetic acid-amid	no	no	0.946	0.658	0.401	3e-79
O81829		612	Indole-3-acetic acid-amid	no	no	0.925	0.625	0.396	3e-77
O82333		590	Probable indole-3-acetic	no	no	0.896	0.628	0.401	2e-76
Q9LSQ4		612	Indole-3-acetic acid-amid	no	no	0.917	0.620	0.390	8e-75
Q9SZT9		549	Indole-3-acetic acid-amid	no	no	0.922	0.695	0.396	1e-74
Q0D4Z6		605	Probable indole-3-acetic	no	no	0.927	0.634	0.390	5e-74

>sp\|Q6I581\|GH35_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1	Back alignment and function desciption

 Score =  606 bits (1563), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 280/400 (70%), Positives = 338/400 (84%), Gaps = 5/400 (1%)

Query: 5   METVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVP 64
           M     +E I EFE +T+DA R+Q++TL+KILE NASAEYLQN GL GRTD ES+KSC+P
Sbjct: 1   MTICSCEETINEFEMLTRDAARVQKDTLKKILEINASAEYLQNFGLGGRTDAESYKSCIP 60

Query: 65  LVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFR 124
           L  H D++PYIQRI+DGD SP++TG+PIT +S SSGTT GKPKF+PFNDEL+ETTLQI+R
Sbjct: 61  LCVHNDIEPYIQRIVDGDTSPVVTGEPITNLSLSSGTTHGKPKFIPFNDELLETTLQIYR 120

Query: 125 TSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCC 184
           TSYAFRNRE+PIG+GKALQF+YGSKQ  TKGG+ A TATTN+YR   +K  MK +QSQCC
Sbjct: 121 TSYAFRNREYPIGQGKALQFVYGSKQVITKGGILATTATTNLYRRQRYKEGMKDIQSQCC 180

Query: 185 SPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIRE 244
           SPDEVIFGPDFHQSLYCHLLCGLI+ EE+  VFSTFAHSLVHAF+TFE VWE+LC DIR+
Sbjct: 181 SPDEVIFGPDFHQSLYCHLLCGLIYSEEVHSVFSTFAHSLVHAFQTFEEVWEDLCTDIRD 240

Query: 245 GVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTG 304
           GVLS ++T PSIR A+SKILKPNPELAD I+KKC GLSNWYG+IP L+PNAKY+ GIMTG
Sbjct: 241 GVLSKKVTAPSIREAVSKILKPNPELADSIYKKCIGLSNWYGVIPALWPNAKYVYGIMTG 300

Query: 305 SMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIP-- 362
           SME YLKKLRHYAG+LPL+SADYG+SEGW+G+N++P++PPE  T+AVLP +GYFEFIP  
Sbjct: 301 SMEPYLKKLRHYAGNLPLISADYGASEGWVGSNIDPTVPPEQVTYAVLPQVGYFEFIPLE 360

Query: 363 QRLGNL---ESQVLCIEPKPVGLTEVKVGEEYEIIVTNVA 399
           + +G      + +  IE  PVGLTEV+VG+ YE+++TN A
Sbjct: 361 KPIGEETENSASIHYIESDPVGLTEVEVGKIYEVVITNFA 400

May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q9SKE2\|JAR1_ARATH Jasmonic acid-amido synthetase JAR1 OS=Arabidopsis thaliana GN=JAR1 PE=1 SV=2	Back alignment and function description

>sp\|Q5NAZ7\|GH33_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.3 OS=Oryza sativa subsp. japonica GN=GH3.3 PE=2 SV=2	Back alignment and function description

>sp\|Q53P49\|GH312_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica GN=GH3.12 PE=2 SV=1	Back alignment and function description

>sp\|O22190\|GH33_ARATH Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1	Back alignment and function description

>sp\|O81829\|GH35_ARATH Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1	Back alignment and function description

>sp\|O82333\|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1	Back alignment and function description

>sp\|Q9LSQ4\|GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1	Back alignment and function description

>sp\|Q9SZT9\|GH32_ARATH Indole-3-acetic acid-amido synthetase GH3.2 OS=Arabidopsis thaliana GN=GH3.2 PE=1 SV=3	Back alignment and function description

>sp\|Q0D4Z6\|GH38_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		414
307136360		575	auxin-regulated protein [Cucumis melo su	0.956	0.688	0.791	0.0
449432068		572	PREDICTED: probable indole-3-acetic acid	0.949	0.687	0.784	0.0
357512525		676	GH3 family protein [Medicago truncatula]	0.956	0.585	0.762	0.0
118486804		576	unknown [Populus trichocarpa]	0.951	0.684	0.771	0.0
356571222		587	PREDICTED: probable indole-3-acetic acid	0.963	0.679	0.758	0.0
224064181		576	GH3 family protein [Populus trichocarpa]	0.951	0.684	0.771	0.0
224127866		576	GH3 family protein [Populus trichocarpa]	0.956	0.687	0.777	0.0
356506052		571	PREDICTED: probable indole-3-acetic acid	0.944	0.684	0.759	0.0
356520302		582	PREDICTED: probable indole-3-acetic acid	0.963	0.685	0.756	0.0
383464620		576	auxin-responsive GH3 family protein [Hev	0.954	0.685	0.775	0.0

>gi\|307136360\|gb\|ADN34174.1\| auxin-regulated protein [Cucumis melo subsp. melo]	Back alignment and taxonomy information

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/399 (79%), Positives = 359/399 (89%), Gaps = 3/399 (0%)

Query: 1   MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFK 60
           MLEKME  D +++IE+FE +T+DAER+QRETL+KILEEN SAEYLQNLGLNGRTDP+SFK
Sbjct: 1   MLEKMEAFDGEKVIEQFEEMTRDAERVQRETLKKILEENGSAEYLQNLGLNGRTDPQSFK 60

Query: 61  SCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTL 120
            CVPLV+H+DL+ YIQRI DGD SPILTGKPI TIS SSGTT+G+PK +PFNDEL+ETT+
Sbjct: 61  DCVPLVSHDDLESYIQRIADGDSSPILTGKPIKTISLSSGTTKGRPKLIPFNDELLETTM 120

Query: 121 QIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQ 180
           QI+RTS+AFRN+E P+GKGKALQFIY SKQ KT GGL AGTATTNVYRS+ FK+ M+A+Q
Sbjct: 121 QIYRTSFAFRNKEVPLGKGKALQFIYSSKQFKTNGGLAAGTATTNVYRSAQFKSTMRAIQ 180

Query: 181 SQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCD 240
           SQCCSPDEVIFGPDFHQSLYCHLLCGLIFR+E++ VFSTFAHS+VH+FRTFE VWEELC 
Sbjct: 181 SQCCSPDEVIFGPDFHQSLYCHLLCGLIFRDEVEFVFSTFAHSIVHSFRTFEQVWEELCS 240

Query: 241 DIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSG 300
           +IR+GVLSS +T PSIRAAMSK+LKPNPELADLI++KC GLSNWYGLIPELFPNAKY+ G
Sbjct: 241 NIRDGVLSSWVTAPSIRAAMSKLLKPNPELADLIYRKCEGLSNWYGLIPELFPNAKYIYG 300

Query: 301 IMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEF 360
           IMTGSME YLKKLRHYAG LPLMSADYGSSEGW+GANVNP LPPE+ATFAVLPNIGYFEF
Sbjct: 301 IMTGSMEPYLKKLRHYAGHLPLMSADYGSSEGWVGANVNPMLPPEMATFAVLPNIGYFEF 360

Query: 361 IPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVA 399
           IP +  N + Q      KP+GLTEVK+GEEYEIIVTNVA
Sbjct: 361 IPLK-ENAQGQHQ--RNKPIGLTEVKIGEEYEIIVTNVA 396

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449432068\|ref\|XP_004133822.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Cucumis sativus] gi\|449477906\|ref\|XP_004155158.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357512525\|ref\|XP_003626551.1\| GH3 family protein [Medicago truncatula] gi\|355501566\|gb\|AES82769.1\| GH3 family protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|118486804\|gb\|ABK95237.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356571222\|ref\|XP_003553778.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max]	Back alignment and taxonomy information

>gi\|224064181\|ref\|XP_002301399.1\| GH3 family protein [Populus trichocarpa] gi\|222843125\|gb\|EEE80672.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224127866\|ref\|XP_002320183.1\| GH3 family protein [Populus trichocarpa] gi\|222860956\|gb\|EEE98498.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356506052\|ref\|XP_003521802.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max]	Back alignment and taxonomy information

>gi\|356520302\|ref\|XP_003528802.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max]	Back alignment and taxonomy information

>gi\|383464620\|gb\|AFH35030.1\| auxin-responsive GH3 family protein [Hevea brasiliensis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		414
UNIPROTKB\|Q6I581		581	GH3.5 "Probable indole-3-aceti	0.954	0.679	0.7	8.9e-157
UNIPROTKB\|Q5NAZ7		462	GH3.3 "Probable indole-3-aceti	0.951	0.852	0.630	6.7e-136
UNIPROTKB\|Q53P49		613	GH3.12 "Probable indole-3-acet	0.871	0.588	0.551	5.1e-106
TAIR\|locus:2125571		591	DFL2 "DWARF IN LIGHT 2" [Arabi	0.944	0.661	0.512	8.6e-104
TAIR\|locus:2058588		595	GH3.3 [Arabidopsis thaliana (t	0.946	0.658	0.401	9.3e-75
TAIR\|locus:2131739		612	WES1 [Arabidopsis thaliana (ta	0.925	0.625	0.396	2.2e-73
TAIR\|locus:2060500		590	GH3.1 "AT2G14960" [Arabidopsis	0.893	0.627	0.402	1.1e-71
TAIR\|locus:2147314		612	DFL1 "DWARF IN LIGHT 1" [Arabi	0.929	0.629	0.387	2.9e-71
UNIPROTKB\|P0C0M2		614	GH3.2 "Probable indole-3-aceti	0.934	0.630	0.382	1.8e-69
TAIR\|locus:2008134		573	AT1G48660 "AT1G48660" [Arabido	0.905	0.654	0.397	2.4e-69

UNIPROTKB\|Q6I581 GH3.5 "Probable indole-3-acetic acid-amido synthetase GH3.5" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

 Score = 1528 (542.9 bits), Expect = 8.9e-157, P = 8.9e-157
 Identities = 280/400 (70%), Positives = 338/400 (84%)

Query:     5 METVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVP 64
             M     +E I EFE +T+DA R+Q++TL+KILE NASAEYLQN GL GRTD ES+KSC+P
Sbjct:     1 MTICSCEETINEFEMLTRDAARVQKDTLKKILEINASAEYLQNFGLGGRTDAESYKSCIP 60

Query:    65 LVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFR 124
             L  H D++PYIQRI+DGD SP++TG+PIT +S SSGTT GKPKF+PFNDEL+ETTLQI+R
Sbjct:    61 LCVHNDIEPYIQRIVDGDTSPVVTGEPITNLSLSSGTTHGKPKFIPFNDELLETTLQIYR 120

Query:   125 TSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCC 184
             TSYAFRNRE+PIG+GKALQF+YGSKQ  TKGG+ A TATTN+YR   +K  MK +QSQCC
Sbjct:   121 TSYAFRNREYPIGQGKALQFVYGSKQVITKGGILATTATTNLYRRQRYKEGMKDIQSQCC 180

Query:   185 SPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIRE 244
             SPDEVIFGPDFHQSLYCHLLCGLI+ EE+  VFSTFAHSLVHAF+TFE VWE+LC DIR+
Sbjct:   181 SPDEVIFGPDFHQSLYCHLLCGLIYSEEVHSVFSTFAHSLVHAFQTFEEVWEDLCTDIRD 240

Query:   245 GVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTG 304
             GVLS ++T PSIR A+SKILKPNPELAD I+KKC GLSNWYG+IP L+PNAKY+ GIMTG
Sbjct:   241 GVLSKKVTAPSIREAVSKILKPNPELADSIYKKCIGLSNWYGVIPALWPNAKYVYGIMTG 300

Query:   305 SMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIP-- 362
             SME YLKKLRHYAG+LPL+SADYG+SEGW+G+N++P++PPE  T+AVLP +GYFEFIP  
Sbjct:   301 SMEPYLKKLRHYAGNLPLISADYGASEGWVGSNIDPTVPPEQVTYAVLPQVGYFEFIPLE 360

Query:   363 QRLGNL---ESQVLCIEPKPVGLTEVKVGEEYEIIVTNVA 399
             + +G      + +  IE  PVGLTEV+VG+ YE+++TN A
Sbjct:   361 KPIGEETENSASIHYIESDPVGLTEVEVGKIYEVVITNFA 400

GO:0009416 "response to light stimulus" evidence=IC

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB\|Q5NAZ7 GH3.3 "Probable indole-3-acetic acid-amido synthetase GH3.3" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53P49 GH3.12 "Probable indole-3-acetic acid-amido synthetase GH3.12" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2125571 DFL2 "DWARF IN LIGHT 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2058588 GH3.3 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2131739 WES1 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060500 GH3.1 "AT2G14960" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2147314 DFL1 "DWARF IN LIGHT 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P0C0M2 GH3.2 "Probable indole-3-acetic acid-amido synthetase GH3.2" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2008134 AT1G48660 "AT1G48660" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SKE2	JAR1_ARATH	6, ., 3, ., 2, ., -	0.6592	0.9492	0.6834	yes	no
Q6I581	GH35_ORYSJ	6, ., 3, ., 2, ., -	0.7	0.9541	0.6798	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		414
pfam03321		513	pfam03321, GH3, GH3 auxin-responsive promoter	1e-134
PLN02620		612	PLN02620, PLN02620, indole-3-acetic acid-amido syn	1e-101
PLN02247		606	PLN02247, PLN02247, indole-3-acetic acid-amido syn	1e-94
PLN02249		597	PLN02249, PLN02249, indole-3-acetic acid-amido syn	1e-89

>gnl\|CDD\|217492 pfam03321, GH3, GH3 auxin-responsive promoter	Back alignment and domain information

 Score =  395 bits (1016), Expect = e-134
 Identities = 159/394 (40%), Positives = 210/394 (53%), Gaps = 51/394 (12%)

Query: 14  IEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQP 73
           ++E E  T +A  +Q E LR+ILE NA  EY +  G +G T  + FK  VP+VT+EDL+P
Sbjct: 3   LKEIELFTSNAVEVQEEVLREILERNADTEYGKKYGFSGITSYDDFKKRVPVVTYEDLKP 62

Query: 74  YIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAF--RN 131
           YI+RI +G+ S IL   PIT  + SSGTT GK KF+P  DEL+E    +   +      N
Sbjct: 63  YIERIANGEPS-ILWPGPITYFALSSGTTGGKSKFIPVTDELLERFHFLGALAVLLLYLN 121

Query: 132 REFPI----GKGKALQFIYGSKQSKTKGGLNAGTATTNVYR--SSTFKAEMKAMQSQCCS 185
              P     GK   L   +   + KT GG+ AG  +T +YR     FK           S
Sbjct: 122 NNPPGLFFEGKSLGLGGSFVKPELKTPGGIPAGDLSTILYRNLPFWFK--------LYTS 173

Query: 186 PDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREG 245
           PDEVI   D  QS YC LLCGLI RE++  +    A  LV   R  E  W+ELC DIR G
Sbjct: 174 PDEVILCIDDWQSKYCALLCGLI-REDVGRISGVPAWMLVLLIRFLEKHWKELCTDIRTG 232

Query: 246 VLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS 305
                             L+PNPELADLI ++CS       +I EL+PN KY+     GS
Sbjct: 233 T-----------------LRPNPELADLIEQECS------KIIKELWPNLKYVFVWGGGS 269

Query: 306 MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRL 365
           ME Y  KL    G LPL S  Y +SEG+ G N++    PE  ++ ++PN G+FEFIP   
Sbjct: 270 MEPYRPKLEKLLGGLPLYSETYAASEGFFGINLD----PEDVSYTLMPNSGFFEFIP--- 322

Query: 366 GNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVA 399
                +    +PK V L EV++G+ YE+++T  A
Sbjct: 323 ---VDEDGDEDPKIVDLVEVELGKNYELVITTFA 353

Length = 513

>gnl\|CDD\|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		414
PLN02620		612	indole-3-acetic acid-amido synthetase	100.0
PLN02247		606	indole-3-acetic acid-amido synthetase	100.0
PLN02249		597	indole-3-acetic acid-amido synthetase	100.0
PF03321		528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	100.0
COG1541		438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	98.67
TIGR03335		445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	98.66
TIGR02155		422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	98.56
TIGR02304		430	aden_form_hyp probable adenylate-forming enzyme. M	98.06
PRK04813		503	D-alanine--poly(phosphoribitol) ligase subunit 1;	95.15
PRK07529		632	AMP-binding domain protein; Validated	94.73
PRK06187		521	long-chain-fatty-acid--CoA ligase; Validated	94.69
PRK06334		539	long chain fatty acid--[acyl-carrier-protein] liga	93.95
COG1022		613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	92.45
TIGR01734		502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	91.92
COG1021		542	EntE Peptide arylation enzymes [Secondary metaboli	87.96
PRK12467		3956	peptide synthase; Provisional	86.42
PRK12467		3956	peptide synthase; Provisional	84.53
TIGR02372		386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	81.58
PRK12316		5163	peptide synthase; Provisional	80.21

>PLN02620 indole-3-acetic acid-amido synthetase	Back alignment and domain information

Probab=100.00  E-value=1.7e-101  Score=810.62  Aligned_cols=396  Identities=39%  Similarity=0.664  Sum_probs=373.3

Q ss_pred             CHHHHHHHHHHHhhcHHHHHHHHHHHHHHHcCCChhhhhcCCCCCCChhhhhhcCCCcccCcchHHHHHHHcCCCCCccc
Q 015052            9 DVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILT   88 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~~~~T~yGk~~~f~~i~s~e~Fr~~VPl~~Yed~~pyIeR~~~Ge~~~ll~   88 (414)
                      ++++.++.++..++||.++|+++|++||++|++|+|||+|||++|+++++||++|||++|||++|||+|+++||.++|||
T Consensus        20 ~~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~~~f~~i~~~~~F~~~VPv~~Yedl~pyI~Ri~~Ge~s~vL~   99 (612)
T PLN02620         20 KNKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRHGLNGRTDRETFKKVMPVITYEDIQPDINRIANGDTSPILC   99 (612)
T ss_pred             chHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhcCCCCCCCHHHHHHhCCCccHHHhHHHHHHHHcCCCCCccC
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999679999


Q ss_pred             CcccceEecccCCCCCCcccCcCChHHHHHHHHHHHHHHHHHhccCC-CCCCceEEEeccCCcccCCCCCeeeccccccc
Q 015052           89 GKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVY  167 (414)
Q Consensus        89 ~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p-~~~gk~l~~~~~~~~~~t~~Gip~G~~S~~~~  167 (414)
                      ++||.+|++|||||+|++|+||+|+++++.++.++.+|..++++.+| +..||.||+++.+.+.+|++|||+|++|+..+
T Consensus       100 ~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~~~~~~~~~~~p~l~~Gk~~~~~~~~~~~~T~~Gip~g~~st~~y  179 (612)
T PLN02620        100 SKPISEFLTSSGTSGGERKLMPTIEEELGRRSLLYSLLMPVMSQFVPGLEKGKGMYFLFIKSEAKTPGGLVARPVLTSYY  179 (612)
T ss_pred             CCChhhhhhcCCCCCCceeeeecCHHHHHHHHHHHHHHHHHHHhhCCCcccCcEEEEEecccCccCCCCcccccccchhh
Confidence            99999999999999889999999999999888889999999999888 88999999999999999999999999999999


Q ss_pred             cCchhHHhhHhhhhccCCCcccccCCChhhhHHHHHHhhhhccCcceEEeeccHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 015052          168 RSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVL  247 (414)
Q Consensus       168 ~~~~f~~~p~~~~~~~~~P~e~~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~f~~~l~~~~~~l~~~w~el~~dI~~Gt~  247 (414)
                      ++..|+.+|......|++|.+++.++|..+++||||||+|+++++|..++++|+++|+++++.|+++|++||+||++|++
T Consensus       180 ~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~L~~DI~~G~l  259 (612)
T PLN02620        180 KSSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTLLCRDIRTGTI  259 (612)
T ss_pred             hhhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99998877766566899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEecCChHHHHHHHHhHhCCCCcccccc
Q 015052          248 SSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADY  327 (414)
Q Consensus       248 ~~~i~~~~~R~~l~~~l~~~p~rA~~L~~~~~k~~g~~~i~~~lWP~L~~i~~~~~G~~~~Y~~~l~~~~~~vpi~~~~Y  327 (414)
                      +++++++++|++|+++|+|||++|++|+++|.++ ||+|++++|||||++|+||+||+|++|+++|+.|+|++|+++.+|
T Consensus       260 s~~itd~~~R~av~~~L~p~pelA~~i~~~c~~~-~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y  338 (612)
T PLN02620        260 DSQITDPSVREAVMKILKPDPKLADFVEAECRKE-SWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMY  338 (612)
T ss_pred             CccCCCHHHHHHHHhhcCCCHHHHHHHHHHhccc-cccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccc
Confidence            9999999999999999999999999999999986 999999999999999999999999999999999999999999999


Q ss_pred             cccceeeeecCCCCCCcccceeeecCCceEEEeeecCCCCccc----------cccCCCCceeccCCcccCCeEEEEEec
Q 015052          328 GSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLES----------QVLCIEPKPVGLTEVKVGEEYEIIVTN  397 (414)
Q Consensus       328 ~ASEg~igi~~~~~~~~~~~~~~l~p~~~ffEFIp~~~~~~~~----------~~~~~~~~tl~l~ele~G~~YelViTt  397 (414)
                      +||||+||||++|.++++.++|+|+|+++||||||++  +.+.          ....+++++|+++|||+|++|||||||
T Consensus       339 ~ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt  416 (612)
T PLN02620        339 ASSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVH--RNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTT  416 (612)
T ss_pred             cccceEEEeccCCCCCcccceeeecCCcEEEEEeecc--CcccccccccccccccccccCccccHHHccCCCeEEEEEEe
Confidence            9999999999999998888999999999999999987  4211          001246789999999999999999999


Q ss_pred             CcchhhhccC
Q 015052          398 VAVAGSLFSR  407 (414)
Q Consensus       398 ~~GLyRY~~~  407 (414)
                      .+|||||++.
T Consensus       417 ~~GLyRYrlG  426 (612)
T PLN02620        417 YAGLYRYRVG  426 (612)
T ss_pred             cCceEEEecC
Confidence            9999999873

>PLN02247 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PLN02249 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin	Back alignment and domain information

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03335 F390_ftsA coenzyme F390 synthetase	Back alignment and domain information

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase	Back alignment and domain information

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme	Back alignment and domain information

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>PRK07529 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	Back alignment and domain information

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1	Back alignment and domain information

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		414
4epl_A		581	Crystal Structure Of Arabidopsis Thaliana Gh3.11 (J		1e-158
4b2g_A		609	Crystal Structure Of An Indole-3-acetic Acid Amido		7e-77
4ewv_A		581	Crystal Structure Of Gh3.12 In Complex With Ampcpp		4e-72
4eq4_A		581	Crystal Structure Of Seleno-Methionine Derivatized		3e-69

>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In Complex With Ja-Ile Length = 581

Back alignment and structure

Iteration: 1

Score = 555 bits (1429), Expect = e-158, Method: Compositional matrix adjust. Identities = 265/402 (65%), Positives = 327/402 (81%), Gaps = 9/402 (2%) Query: 1 MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGR-TDPE-S 58 MLEK+ET D++ +I+EF+ +T++A ++Q++TL++IL +N SA YLQN GLNG TDPE + Sbjct: 7 MLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEA 66 Query: 59 FKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMET 118 FKS VPLVT +L+PYI+R++DGD SPILTG P+ IS SSGT+QG+PKF+PF DELME Sbjct: 67 FKSMVPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 Query: 119 TLQIFRTSYAFRNREFPIG-KGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMK 177 TLQ+FRT++AFRNR+FPI GKALQFI+ SKQ + GG+ GTATTNVYR+ FKA MK Sbjct: 127 TLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMK 186 Query: 178 AMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEE 237 ++ S CSPDEVIF PD HQ+LYCHLL G++FR+++Q VF+ FAH LVHAFRTFE VWEE Sbjct: 187 SITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEE 246 Query: 238 LCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKY 297 + DI++GVLS+RITVPS+R AMSK+L PNPELA+ I KC LSNWYGLIP LFPNAKY Sbjct: 247 IVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKY 306 Query: 298 LSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGY 357 + GIMTGSME Y+ KLRHYAGDLPL+S DYGSSEGWI ANV P L PE ATFAV+PN+GY Sbjct: 307 VYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGY 366 Query: 358 FEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVA 399 FEF+P S+ E KPVGLT+VK+GEEYE+++TN A Sbjct: 367 FEFLPV------SETGEGEEKPVGLTQVKIGEEYEVVITNYA 402

PyMOL of 4epl

>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis Length = 609

Back alignment and structure

>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp Length = 581

Back alignment and structure

>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12 Length = 581

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		414
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	1e-111
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	5e-94
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Length = 581	Back alignment and structure

 Score =  337 bits (865), Expect = e-111
 Identities = 260/402 (64%), Positives = 321/402 (79%), Gaps = 9/402 (2%)

Query: 1   MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTD--PES 58
           MLEK+ET D++ +I+EF+ +T++A ++Q++TL++IL +N SA YLQN GLNG      E+
Sbjct: 7   MLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEA 66

Query: 59  FKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMET 118
           FKS VPLVT  +L+PYI+R++DGD SPILTG P+  IS SSGT+QG+PKF+PF DELME 
Sbjct: 67  FKSMVPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126

Query: 119 TLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMK 177
           TLQ+FRT++AFRNR+FP    GKALQFI+ SKQ  + GG+  GTATTNVYR+  FKA MK
Sbjct: 127 TLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMK 186

Query: 178 AMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEE 237
           ++ S  CSPDEVIF PD HQ+LYCHLL G++FR+++Q VF+ FAH LVHAFRTFE VWEE
Sbjct: 187 SITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEE 246

Query: 238 LCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKY 297
           +  DI++GVLS+RITVPS+R AMSK+L PNPELA+ I  KC  LSNWYGLIP LFPNAKY
Sbjct: 247 IVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKY 306

Query: 298 LSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGY 357
           + GIMTGSME Y+ KLRHYAGDLPL+S DYGSSEGWI ANV P L PE ATFAV+PN+GY
Sbjct: 307 VYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGY 366

Query: 358 FEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVA 399
           FEF+P             E KPVGLT+VK+GEEYE+++TN A
Sbjct: 367 FEFLPVSETGEG------EEKPVGLTQVKIGEEYEVVITNYA 402

PyMOL of 4epl

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Length = 581	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		414
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	100.0
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	100.0
4b2g_A		609	GH3-1 auxin conjugating enzyme; signaling protein,	100.0
2y27_A		437	Phenylacetate-coenzyme A ligase; phenylacetic acid	98.86
2y4o_A		443	Phenylacetate-coenzyme A ligase; phenylacetic acid	98.84
3qov_A		436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	98.77
3hgu_A		369	EHPF; phenazine, antibiotic, biosynthetic protein;	98.12
3ivr_A		509	Putative long-chain-fatty-acid COA ligase; structu	95.08
3fce_A		512	D-alanine--poly(phosphoribitol) ligase subunit 1;	94.84
3etc_A		580	AMP-binding protein; adenylate-forming acyl-COA sy	94.82
2d1s_A		548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	94.47
3e7w_A		511	D-alanine--poly(phosphoribitol) ligase subunit 1;	93.96
4gs5_A		358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	80.8

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}	Back alignment and structure

Probab=100.00  E-value=9.6e-104  Score=831.85  Aligned_cols=400  Identities=66%  Similarity=1.095  Sum_probs=369.5

Q ss_pred             CCccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHHHcCCChhhhhcCCCCC-CChh-hhhhcCCCcccCcchHHHHHH
Q 015052            1 MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGR-TDPE-SFKSCVPLVTHEDLQPYIQRI   78 (414)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~~~~T~yGk~~~f~~i-~s~e-~Fr~~VPl~~Yed~~pyIeR~   78 (414)
                      |+|||+..+.++.++.|++.++||.++|+++|++||++|++|+|||+|||++| +|++ +||++|||++|||++|||||+
T Consensus         7 ~~~~~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~gf~~i~~~~e~dF~~~VPi~~Yedl~pyIeRi   86 (581)
T 4epl_A            7 MLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDVELEPYIKRM   86 (581)
T ss_dssp             ------CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTTTCC----CHHHHHHHHSCCBCHHHHHHHHHHH
T ss_pred             hhhcccccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhcCCCcccCCHHHHHHHhCCCccHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999 9999 999999999999999999999


Q ss_pred             HcCCCCCcccCcccceEecccCCCCCCcccCcCChHHHHHHHHHHHHHHHHHhccCC-CC-CCceEEEeccCCcccCCCC
Q 015052           79 IDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IG-KGKALQFIYGSKQSKTKGG  156 (414)
Q Consensus        79 ~~Ge~~~ll~~~pi~~f~~TSGTT~g~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p-~~-~gk~l~~~~~~~~~~t~~G  156 (414)
                      ++||.++|||++||.+|++|||||+|++|+||+|+++++.++++..++..++++ +| ++ .||+|+|++++++.+|++|
T Consensus        87 ~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~-~p~l~~~Gk~L~l~~~s~~~~t~~G  165 (581)
T 4epl_A           87 VDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNR-DFPIDDNGKALQFIFSSKQYISTGG  165 (581)
T ss_dssp             HTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH-HSCCCTTCEEEEECCCCCCEECTTS
T ss_pred             HCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhh-CCccccCCcEEEEeecCCcccCCCC
Confidence            999978999999999999999999999999999999999987788888888876 55 88 8999998889999999999


Q ss_pred             CeeeccccccccCchhHHhhHhhhhccCCCcccccCCChhhhHHHHHHhhhhccCcceEEeeccHHHHHHHHHHHHHHHH
Q 015052          157 LNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWE  236 (414)
Q Consensus       157 ip~G~~S~~~~~~~~f~~~p~~~~~~~~~P~e~~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~f~~~l~~~~~~l~~~w~  236 (414)
                      +|+|++|++.+++..|+.+|.|+...+++|.+++.++|..+++||||||||+++++|.+|+++||++|+++++.|+++|+
T Consensus       166 i~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~We  245 (581)
T 4epl_A          166 VPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWE  245 (581)
T ss_dssp             CEEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             ceeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCCCcHHHHHHHhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeEEEecCChHHHHHHHHhH
Q 015052          237 ELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHY  316 (414)
Q Consensus       237 el~~dI~~Gt~~~~i~~~~~R~~l~~~l~~~p~rA~~L~~~~~k~~g~~~i~~~lWP~L~~i~~~~~G~~~~Y~~~l~~~  316 (414)
                      +||+||++|+++++++++++|++|+++|+|||++|++|+++|++.++|+|++++|||||++|+||++|+|++|+++|++|
T Consensus       246 ~l~~dI~~gtl~~~it~~~~R~~l~~v~~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~~~  325 (581)
T 4epl_A          246 EIVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRHY  325 (581)
T ss_dssp             HHHHHHHHTCCCTTCCCHHHHHHHHTTCCCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHHHH
T ss_pred             HHHHHHHhcCCCcCCCCHHHHHHHhCCCCCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999987224999999999999999999999999999999999


Q ss_pred             hCCCCcccccccccceeeeecCCCCCCcccceeeecCCceEEEeeecCCCCccccccCCCCceeccCCcccCCeEEEEEe
Q 015052          317 AGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVT  396 (414)
Q Consensus       317 ~~~vpi~~~~Y~ASEg~igi~~~~~~~~~~~~~~l~p~~~ffEFIp~~~~~~~~~~~~~~~~tl~l~ele~G~~YelViT  396 (414)
                      +|++|+++++|+||||+||||+++.++++.++|+|+|+.+||||||++  +.++    +++++|+++|||+|++||||||
T Consensus       326 ~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~--~~~~----~~~~~v~l~eve~G~~YelviT  399 (581)
T 4epl_A          326 AGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVS--ETGE----GEEKPVGLTQVKIGEEYEVVIT  399 (581)
T ss_dssp             HTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC-------------CCCEEGGGCCTTCEEEEEEE
T ss_pred             cCCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecc--cccC----CCCceeeHHHcCCCCeEEEEEe
Confidence            999999999999999999999999998888899999999999999998  6653    6789999999999999999999


Q ss_pred             cCcchhhhccC
Q 015052          397 NVAVAGSLFSR  407 (414)
Q Consensus       397 t~~GLyRY~~~  407 (414)
                      |.+|||||++.
T Consensus       400 t~~GL~RYr~G  410 (581)
T 4epl_A          400 NYAGLYRYRLG  410 (581)
T ss_dssp             STTSCSSEEEE
T ss_pred             eccceeeEEcC
Confidence            99999999863

PyMOL of 4epl

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*	Back alignment and structure

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}	Back alignment and structure

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*	Back alignment and structure

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}	Back alignment and structure

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*	Back alignment and structure

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*	Back alignment and structure

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0	Back alignment and structure

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*	Back alignment and structure

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}	Back alignment and structure

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*	Back alignment and structure

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*	Back alignment and structure

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00