Citrus Sinensis ID: 015177

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
Protein Sequence
MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELGDGEVDDGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAALWKVEAQDVGNFCTFISYTLLHAKSSQLSGPSSSALKITNFKVNSLQKTSRSVLSS
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHcccHcccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccHHHHHHHHHcccccccccEEccc
Coil and Loop (DISEMBL)
mgsipdpgelselnplsfdeFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISrgqelgdgevddgDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAalsecvdpAKFVMEAISevfpvdkrsdksgndlGWACVLVLESLipvmvdpvigkmrmlvtpSVKEKAKEIAERWKASLEerggienvktpdvHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEvglvdkfppvpLLKAFLKDAKKAAVSILEDPNNAGRAALWKVEAQDVGNFCTFISYTLLhakssqlsgpsssalkitnfkvnslqktsrsvlss
Flexible Loop (DISEMBL)
mgsipdpgelselnpLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQtldtqtkasldvlkkrevtidgsveiAMEKLEDRTEATlnsisrgqelgdgevDDGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFpvdkrsdksgNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASleerggienvktpdvHTFLQLLVTFgivkkedvdLYRKLvvgsawrkqmpkLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAALWKVEAQDVGNFCTFISYTLLHAKSSQLSGPSSSAlkitnfkvnslqktsrsvlss
Low Complexity Region (SEG)
MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQelgdgevddgdgllMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPllkaflkdakkaaVSILEDPNNAGRAALWKVEAQDVGNFCTFISYTLLHAKssqlsgpsssALKITNFKVNSLQKTSRSVLSS
Disordered region (IsUnstruct)
************************TSLMTSCTLLWKELSDHFTSL*************************LDVLKKREVTIDGSV******************************DGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKR***SGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAALWKVEAQDVGNFCTFISYTLLHA*********************************
Disordered Region (DISOPRED)
************LN*LSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQK***************************************************************************YCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFP**********DLGWACVLVLESLIPVMVD*************VKEKAKEIAERWKA*L********V**PDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKD***************************VGNFCTFISYTLLHAKSSQLSG**************************
Disordered Region (DISEMBL)
MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELGDGEVDDGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAALWKVEAQDVGNFCTFISYTLLHAK*********SALKITNFKVNS***********
Disordered Region (DISPRO)
******PGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISR**********DGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAALWKVEAQDVGNFCTFISYTLLHAKSS*****SSSALKITNFKVNS***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLxxxxxxxxxxxxxxxxxxxxxTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELGDGEVDDGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAALWKVEAQDVGNFCTFISYTLLHAKSSQLSGPSSSALKITNFKVNSLQKTSRSVLSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	412	2.2.26 [Sep-21-2011]
P0DH90	609	Protein FRIGIDA OS=Arabid	no	no	0.492	0.333	0.262	6e-11
Q67Z93	314	Inactive protein FRIGIDA	no	no	0.317	0.417	0.255	1e-05

>sp|P0DH90|FRIGI_ARATH Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1

 Score = 69.3 bits (168), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 108/225 (48%), Gaps = 22/225 (9%)

Query: 128 CLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGN 187
           C  M ++G  K++     +  +L   +P+AL    +PAKFV++ I + +   +R+    +
Sbjct: 149 CELMCSKGLRKYIYANISDQAKLMEEIPSALKLAKEPAKFVLDCIGKFYLQGRRAFTKES 208

Query: 188 DLGWA---CVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENV 244
            +  A    +L+LES +   + P  GK ++ +   +K++A+  A  W+  L   GG+   
Sbjct: 209 PMSSARQVSLLILESFL---LMPDRGKGKVKIESWIKDEAETAAVAWRKRLMTEGGLAAA 265

Query: 245 KTPDVHTFLQLLVTFGI---VKKED-VDLYR----KLVVGSAWRKQMPKLAVSLGLGDKM 296
           +  D    L L+  FG+    +  D +DL R      + G+  R Q     V +  G   
Sbjct: 266 EKMDARGLLLLVACFGVPSNFRSTDLLDLIRMSGSNEIAGALKRSQ---FLVPMVSG--- 319

Query: 297 PEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKA 341
             ++E  I RG  ++A+   Y  G+ DKF    +L +FLK +K++
Sbjct: 320 --IVESSIKRGMHIEALEMVYTFGMEDKFSAALVLTSFLKMSKES 362

Required for the regulation of flowering time in the late-flowering phenotype. Increases RNA levels of 'FLOWERING LOCUS C'. Variants with an early-flowering phenotype (Including cv. Columbia, cv. Landsberg Erecta and cv. Wassilewskija) show loss-of-function mutations of FRI.
Arabidopsis thaliana (taxid: 3702)

>sp|Q67Z93|FRIG0_ARATH Inactive protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 128 CLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGN 187
           C  M ++G  K++     +  +L   +P+AL    +PAKFV++ I + +   +R+    +
Sbjct: 149 CELMCSKGLRKYIYANISDQAKLMEEIPSALKLAKEPAKFVLDCIGKFYLQGRRAFTKES 208

Query: 188 DLGWA---CVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENV 244
            +  A    +L+LES    ++ P  GK ++ +   +K++A+  A  W+  L   GG+   
Sbjct: 209 PMSSARQVSLLILESF---LLMPDRGKGKVKIESWIKDEAETAAVAWRKRLMTEGGLAAA 265

Query: 245 KTPDVHTFLQLLVTFGI 261
           +  D    L L+  FG+
Sbjct: 266 EKMDARGLLLLVACFGV 282

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
224099807	507	predicted protein [Populus trichocarpa]	0.864	0.702	0.825	1e-170
255552183	520	Protein FRIGIDA, putative [Ricinus commu	0.864	0.684	0.816	1e-167
225432666	522	PREDICTED: protein FRIGIDA-like [Vitis v	0.856	0.676	0.776	1e-160
147790518	524	hypothetical protein VITISV_022061 [Viti	0.856	0.673	0.776	1e-160
297830970	531	hydroxyproline-rich glycoprotein family	0.859	0.666	0.744	1e-154
18403383	532	FRIGIDA-like protein [Arabidopsis thalia	0.861	0.667	0.734	1e-152
356536009	530	PREDICTED: uncharacterized protein LOC10	0.864	0.671	0.722	1e-150
2244847	507	hydroxyproline-rich glycoprotein homolog	0.864	0.702	0.722	1e-149
401710192	519	frigida-like protein [Medicago sativa]	0.861	0.684	0.713	1e-149
18414336	532	FRIGIDA-like protein [Arabidopsis thalia	0.864	0.669	0.722	1e-149

>gi|224099807|ref|XP_002311627.1| predicted protein [Populus trichocarpa] gi|222851447|gb|EEE88994.1| predicted protein [Populus trichocarpa]

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 297/360 (82%), Positives = 320/360 (88%), Gaps = 4/360 (1%)

Query: 1   MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
           MGSIPDPGEL+EL   SFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKS AL+HKI
Sbjct: 1   MGSIPDPGELTELTRPSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSEALKHKI 60

Query: 61  QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQ-ELGDGEVDDGDG 119
           QTLD QTKASL  LKKREVTIDGSVEIA+E++E+  E  L S+S    E  DGEVDDGDG
Sbjct: 61  QTLDNQTKASLASLKKREVTIDGSVEIALERVEEHRELALKSLSDPDYENPDGEVDDGDG 120

Query: 120 LLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVD 179
             M+L S CL ME+R FW FV+TKKKEIE LR  +P AL+ECVDPAKFV+EAISEVFPVD
Sbjct: 121 SFMVLKSLCLTMESRDFWNFVITKKKEIEILRKQIPLALAECVDPAKFVIEAISEVFPVD 180

Query: 180 KRSDKSG---NDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLE 236
           KR ++SG   NDLGWACVL+LESLIPV+VDPVIGK R+LVTP+VKE+AKEIAE WK SLE
Sbjct: 181 KRGERSGEKGNDLGWACVLILESLIPVVVDPVIGKSRLLVTPTVKERAKEIAETWKKSLE 240

Query: 237 ERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKM 296
           ERGGIENVKTPDVHTFLQ LVTFGIVKK+DVDLYRKLVVGSAWRKQMPKLAVSLGLGDKM
Sbjct: 241 ERGGIENVKTPDVHTFLQHLVTFGIVKKDDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKM 300

Query: 297 PEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAA 356
           P+MIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAA S+LEDP N GRAA
Sbjct: 301 PDMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAASVLEDPENTGRAA 360

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552183|ref|XP_002517136.1| Protein FRIGIDA, putative [Ricinus communis] gi|223543771|gb|EEF45299.1| Protein FRIGIDA, putative [Ricinus communis]

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 293/359 (81%), Positives = 318/359 (88%), Gaps = 3/359 (0%)

Query: 1   MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
           MGSIPDPGEL+EL   SFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKS AL+ KI
Sbjct: 1   MGSIPDPGELTELTQPSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSEALKQKI 60

Query: 61  QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQ---ELGDGEVDDG 117
           QTLDTQTKASL  L+KREVTIDGSVEIA+E+L++  EA L S+       +  DGEVD+G
Sbjct: 61  QTLDTQTKASLANLRKREVTIDGSVEIALERLDEHKEAALKSLENPDSCDDHPDGEVDNG 120

Query: 118 DGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFP 177
           +GLL IL S CLKME+  FW+ +  KKKEIE LR+ +P ALSECVDP +FV+EAISEVFP
Sbjct: 121 EGLLQILKSLCLKMESMEFWQLITRKKKEIEVLRSQIPLALSECVDPCRFVLEAISEVFP 180

Query: 178 VDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEE 237
           VDKR +KSGNDLGWACVL LESLIPV+VDPVIGK R+LVTPSVKE+AKEIAE WK SLEE
Sbjct: 181 VDKRCEKSGNDLGWACVLSLESLIPVVVDPVIGKCRVLVTPSVKERAKEIAETWKRSLEE 240

Query: 238 RGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMP 297
           RGGIENVKTPDVHTFLQ LVTFGIVKKEDVDLYRKLVV SAWRKQMPKLA+SLGLGDKMP
Sbjct: 241 RGGIENVKTPDVHTFLQHLVTFGIVKKEDVDLYRKLVVASAWRKQMPKLALSLGLGDKMP 300

Query: 298 EMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAA 356
           +MIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAA SILEDP+N GRAA
Sbjct: 301 DMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAASILEDPDNTGRAA 359

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432666|ref|XP_002282465.1| PREDICTED: protein FRIGIDA-like [Vitis vinifera]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 278/358 (77%), Positives = 320/358 (89%), Gaps = 5/358 (1%)

Query: 1   MGSIPDPGELS-ELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHK 59
           MGSIPDPG++S ELN  SFD+FQ+QTSLMTSCTLLWKELSDHFTSLEQNLQKKS AL++K
Sbjct: 1   MGSIPDPGDISGELNQPSFDDFQKQTSLMTSCTLLWKELSDHFTSLEQNLQKKSEALKNK 60

Query: 60  IQTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELGDGEVDDGDG 119
            QTLD  TK SL VLKKREVTIDGSVEIA+ K+E+  EA L ++ +G +  DGEVDD +G
Sbjct: 61  FQTLDHHTKESLGVLKKREVTIDGSVEIALGKVEESREAALIALLKGAQ--DGEVDDSEG 118

Query: 120 LLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVD 179
           LL+ L S+CLKM+++ FW+F+  +KKE++ LR   P AL+ECVDPAKFV+EAISEVFPVD
Sbjct: 119 LLLKLKSFCLKMDSKEFWRFITARKKELDALRAQTPEALAECVDPAKFVLEAISEVFPVD 178

Query: 180 KRSDKS--GNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEE 237
           KR +KS   NDLGWACVLVLESLIPV+VDPV+GK R+LVTPSVKE+AK+IAE WKASL++
Sbjct: 179 KRVEKSERSNDLGWACVLVLESLIPVVVDPVLGKSRLLVTPSVKERAKDIAETWKASLDQ 238

Query: 238 RGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMP 297
           RGGIENVKTPDVHTFLQ LVTFGIVK+EDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKM 
Sbjct: 239 RGGIENVKTPDVHTFLQHLVTFGIVKEEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMA 298

Query: 298 EMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRA 355
           +MIEEL++RGQQ+DAVHFTYEVGLVDKFPPVPLLKAFL+D+KKAA SILEDPNN+GRA
Sbjct: 299 DMIEELVNRGQQVDAVHFTYEVGLVDKFPPVPLLKAFLRDSKKAATSILEDPNNSGRA 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790518|emb|CAN69766.1| hypothetical protein VITISV_022061 [Vitis vinifera]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 278/358 (77%), Positives = 320/358 (89%), Gaps = 5/358 (1%)

Query: 1   MGSIPDPGELS-ELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHK 59
           MGSIPDPG++S ELN  SFD+FQ+QTSLMTSCTLLWKELSDHFTSLEQNLQKKS AL++K
Sbjct: 1   MGSIPDPGDISGELNXPSFDDFQKQTSLMTSCTLLWKELSDHFTSLEQNLQKKSEALKNK 60

Query: 60  IQTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELGDGEVDDGDG 119
            QTLD  TK SL VLKKREVTIDGSVEIA+ K+E+  EA L ++ +G +  DGEVDD +G
Sbjct: 61  FQTLDHHTKESLGVLKKREVTIDGSVEIALGKVEESREAALIALLKGAQ--DGEVDDSEG 118

Query: 120 LLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVD 179
           LL+ L S+CLKM+++ FW+F+  +KKE++ LR   P AL+ECVDPAKFV+EAISEVFPVD
Sbjct: 119 LLLKLKSFCLKMDSKEFWRFITARKKELDALRAQTPEALAECVDPAKFVLEAISEVFPVD 178

Query: 180 KRSDKS--GNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEE 237
           KR +KS   NDLGWACVLVLESLIPV+VDPV+GK R+LVTPSVKE+AK+IAE WKASL++
Sbjct: 179 KRVEKSERSNDLGWACVLVLESLIPVVVDPVLGKSRLLVTPSVKERAKDIAETWKASLDQ 238

Query: 238 RGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMP 297
           RGGIENVKTPDVHTFLQ LVTFGIVK+EDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKM 
Sbjct: 239 RGGIENVKTPDVHTFLQHLVTFGIVKEEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMA 298

Query: 298 EMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRA 355
           +MIEEL++RGQQ+DAVHFTYEVGLVDKFPPVPLLKAFL+D+KKAA SILEDPNN+GRA
Sbjct: 299 DMIEELVNRGQQVDAVHFTYEVGLVDKFPPVPLLKAFLRDSKKAATSILEDPNNSGRA 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830970|ref|XP_002883367.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata] gi|297329207|gb|EFH59626.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/360 (74%), Positives = 305/360 (84%), Gaps = 6/360 (1%)

Query: 1   MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
           MGS+PDPGEL+EL   SF+EFQ+QTSLMTSCTLLW+ELSDHFTSLEQNL KKS AL+  I
Sbjct: 1   MGSVPDPGELTELAQPSFEEFQKQTSLMTSCTLLWQELSDHFTSLEQNLMKKSEALKQMI 60

Query: 61  QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELGDG------EV 114
           +TLD QT+ SL+ LK+REVTID SVEI   K+ +R  A L S+ + ++ GDG      EV
Sbjct: 61  ETLDNQTQTSLESLKRREVTIDHSVEIVAGKVGERARAALESLEKARDGGDGSNDDSGEV 120

Query: 115 DDGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISE 174
           DD +GLL  L S CLKM+ARGFW FV  +KKE+E LR+ +PAAL +CVDPA  V+EAISE
Sbjct: 121 DDEEGLLSALKSLCLKMDARGFWNFVTARKKELENLRSKIPAALVDCVDPAMLVLEAISE 180

Query: 175 VFPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKAS 234
           VFPVDKR DK  ND GWACV++LESL PVMVDPVIGK R+LVTPSVKEKAKEIAE WKAS
Sbjct: 181 VFPVDKRGDKVSNDYGWACVVILESLTPVMVDPVIGKSRLLVTPSVKEKAKEIAETWKAS 240

Query: 235 LEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGD 294
           LEERG IENVKTPDVHTFLQ LVTFGIVK ED+ LYRKLVVGSAWRKQMPKLAVS+GLGD
Sbjct: 241 LEERGRIENVKTPDVHTFLQHLVTFGIVKSEDLALYRKLVVGSAWRKQMPKLAVSVGLGD 300

Query: 295 KMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGR 354
           +MP+MIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKA+L+DAKK+A SI+E+ +N GR
Sbjct: 301 QMPDMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAYLRDAKKSAASIMEESSNTGR 360

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403383|ref|NP_566709.1| FRIGIDA-like protein [Arabidopsis thaliana] gi|9293881|dbj|BAB01784.1| hydroxyproline-rich glycoprotein [Arabidopsis thaliana] gi|15292673|gb|AAK92705.1| unknown protein [Arabidopsis thaliana] gi|20465585|gb|AAM20275.1| putative hydroxyproline-rich glycoprotein [Arabidopsis thaliana] gi|21537354|gb|AAM61695.1| hydroxyproline-rich glycoprotein-like protein [Arabidopsis thaliana] gi|332643119|gb|AEE76640.1| FRIGIDA-like protein [Arabidopsis thaliana]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 266/362 (73%), Positives = 304/362 (83%), Gaps = 7/362 (1%)

Query: 1   MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
           MGS+PDPGEL+EL   SF+EFQ+QTSLMTSCTLLW+ELSDHFTSLEQNL KKS AL+  I
Sbjct: 1   MGSVPDPGELTELAQPSFEEFQKQTSLMTSCTLLWQELSDHFTSLEQNLMKKSEALKQMI 60

Query: 61  QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQE-LGDG------E 113
           +TLD QT+ SL+ LK+REVTID SVEI   K+ +R  A L S+ + ++  GDG      +
Sbjct: 61  ETLDNQTQTSLESLKRREVTIDHSVEIVAGKVGERARAALESLEKARDGCGDGSNDDSGD 120

Query: 114 VDDGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAIS 173
           VDD +GLL  L S CLKM+ARGFW FV  +KKE+E LR+ +PAAL +CVDPA  V+EAIS
Sbjct: 121 VDDEEGLLSALKSLCLKMDARGFWNFVTARKKELENLRSKIPAALVDCVDPAMLVLEAIS 180

Query: 174 EVFPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKA 233
           EVFPVD R DK  ND GWACV++LESL PV+VDPVIGK R+LVTPSVKEKAKEIAE WK 
Sbjct: 181 EVFPVDTRGDKVSNDYGWACVVILESLTPVIVDPVIGKSRLLVTPSVKEKAKEIAETWKK 240

Query: 234 SLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLG 293
           SLEERG IENVKTPDVHTFLQ LVTFGIVK ED+ LYRKLVVGSAWRKQMPKLAVS+GLG
Sbjct: 241 SLEERGRIENVKTPDVHTFLQHLVTFGIVKSEDLALYRKLVVGSAWRKQMPKLAVSVGLG 300

Query: 294 DKMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAG 353
           D+MP+MIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKA+L+DAKK+A SI+ED +N G
Sbjct: 301 DQMPDMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAYLRDAKKSAASIMEDSSNTG 360

Query: 354 RA 355
           RA
Sbjct: 361 RA 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536009|ref|XP_003536533.1| PREDICTED: uncharacterized protein LOC100779694 [Glycine max]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/361 (72%), Positives = 303/361 (83%), Gaps = 5/361 (1%)

Query: 1   MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
           MGSIPDPGELSEL   SFDEFQRQTSLMTSCTLLWKELSDHF+SLEQ+L  KS AL+ KI
Sbjct: 1   MGSIPDPGELSELTQPSFDEFQRQTSLMTSCTLLWKELSDHFSSLEQDLNHKSEALKRKI 60

Query: 61  QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQE-----LGDGEVD 115
           +TLD  T  SL +L +RE ++D +++IA+  L+ R  A L+++    +       DGEVD
Sbjct: 61  RTLDNTTSDSLRLLDRRETSLDATLQIALRTLDTRRTAALSALLTDADDIINSSPDGEVD 120

Query: 116 DGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEV 175
           D  GL++ L S+CL+M+A GF+ FV  KKKE++ LR  +P AL+ECVDPAKFV+EAISEV
Sbjct: 121 DTTGLILKLKSFCLRMDAFGFFAFVSAKKKELDGLRAEMPVALAECVDPAKFVLEAISEV 180

Query: 176 FPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASL 235
           FPVDKR DK+G+DLGWACVLVLESLIPV+VDPVIGK R+LVTP VKE+A EIAE WK SL
Sbjct: 181 FPVDKRGDKAGHDLGWACVLVLESLIPVVVDPVIGKSRLLVTPIVKEQATEIAETWKTSL 240

Query: 236 EERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDK 295
           EERGG+ENVKTPDVHTFLQ +VTFGIVK ED DLYRKLV+ SAWRKQMPKLA+SLGL  +
Sbjct: 241 EERGGVENVKTPDVHTFLQHVVTFGIVKNEDSDLYRKLVIASAWRKQMPKLALSLGLAQQ 300

Query: 296 MPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRA 355
           MP+MIEELIS+GQQLDAVHFTYEVGLV+KFPPVPLLK+FLKDAKK A SILEDPNNAGRA
Sbjct: 301 MPDMIEELISKGQQLDAVHFTYEVGLVEKFPPVPLLKSFLKDAKKVAASILEDPNNAGRA 360

Query: 356 A 356
           A
Sbjct: 361 A 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2244847|emb|CAB10269.1| hydroxyproline-rich glycoprotein homolog [Arabidopsis thaliana] gi|7268236|emb|CAB78532.1| hydroxyproline-rich glycoprotein homolog [Arabidopsis thaliana]

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/361 (72%), Positives = 304/361 (84%), Gaps = 5/361 (1%)

Query: 1   MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
           M S PDPGEL + +  SF EFQ+Q SLMTSC LLWKELS+HFTS+EQNL KKS ALR  I
Sbjct: 1   MESSPDPGELIKSSQPSFFEFQKQASLMTSCNLLWKELSEHFTSMEQNLMKKSEALRQMI 60

Query: 61  QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELGD---GEVDDG 117
           +TLD QT++S+++LK REVTID SVEIA  K+E+R  A L+S+ + ++ GD   GEVDDG
Sbjct: 61  ETLDNQTQSSIELLKHREVTIDHSVEIAEGKVEERVRAALDSLEKARDCGDEDTGEVDDG 120

Query: 118 DGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFP 177
           DGLL  L S CLKM+ARGFW FV+ +KKE+E LR+ +P AL +CVDP K V+EA+SEVFP
Sbjct: 121 DGLLSALKSLCLKMDARGFWGFVIARKKELENLRSQIPVALVDCVDPPKLVLEAVSEVFP 180

Query: 178 VDKRS--DKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASL 235
           VDKR   +K  ND GWACV++LESLIPVMVDPV+GK R+LVTPSVKEKAKEIAE WKASL
Sbjct: 181 VDKRGGGEKVSNDFGWACVVILESLIPVMVDPVMGKSRLLVTPSVKEKAKEIAETWKASL 240

Query: 236 EERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDK 295
           EERGGIENVKTPDVHTFLQ LVTFGIVKK+D+ LYRKLVVGSAWRKQMPKLAVS+GLGD+
Sbjct: 241 EERGGIENVKTPDVHTFLQHLVTFGIVKKDDLALYRKLVVGSAWRKQMPKLAVSVGLGDQ 300

Query: 296 MPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRA 355
           MP+MIEELI RGQQLDAVHFT+EVGLV  FPPVPLLKA+L+DAKKA   I +D NN+GR+
Sbjct: 301 MPDMIEELIIRGQQLDAVHFTFEVGLVHLFPPVPLLKAYLRDAKKATALITDDSNNSGRS 360

Query: 356 A 356
           A
Sbjct: 361 A 361

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|401710192|gb|AFP97615.1| frigida-like protein [Medicago sativa]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/359 (71%), Positives = 307/359 (85%), Gaps = 4/359 (1%)

Query: 1   MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
           MGSIPDPGEL+EL   SFD+FQRQTSLMTSCTLLWKELSDHF+SLEQ+L  KS AL  KI
Sbjct: 1   MGSIPDPGELTELTQPSFDDFQRQTSLMTSCTLLWKELSDHFSSLEQDLLNKSEALNRKI 60

Query: 61  QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQEL---GDGEVDDG 117
           ++LD QT  SL++L+ RE T+D +++IA+  +++RTEA L ++SR +E    GDGEVD+G
Sbjct: 61  RSLDNQTNESLNLLRHRESTLDDALQIALRDIDNRTEAALAALSRVREDVEDGDGEVDNG 120

Query: 118 DGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFP 177
           +GL++ L S+CLKM+A GFW FV+ KKKE+E LR  +P AL EC+DPAKFV+EAISEVFP
Sbjct: 121 EGLMLKLKSFCLKMDALGFWGFVIGKKKELEGLRAEMPEALGECIDPAKFVLEAISEVFP 180

Query: 178 VDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEE 237
           VDKR DKSGNDLGWACVLVLESL+PVMVDPV+ K RML TP+VK+ A ++AE+WK SLEE
Sbjct: 181 VDKRGDKSGNDLGWACVLVLESLVPVMVDPVL-KSRMLATPTVKKLANDVAEKWKVSLEE 239

Query: 238 RGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMP 297
           RGG+ENVKTPDVHTFLQ  VTFGIV  +D+ LYRKLV+ SAWRK MPK A+SLGL ++MP
Sbjct: 240 RGGVENVKTPDVHTFLQHPVTFGIVDSDDLGLYRKLVIASAWRKHMPKPALSLGLENQMP 299

Query: 298 EMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAA 356
           +MIEELIS+GQQLDAVHFT+EVGLV+KFPPVPLLK++LKDAKK A SILEDPNNAGRA 
Sbjct: 300 DMIEELISKGQQLDAVHFTFEVGLVEKFPPVPLLKSYLKDAKKVAASILEDPNNAGRAG 358

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414336|ref|NP_567447.1| FRIGIDA-like protein [Arabidopsis thaliana] gi|15451076|gb|AAK96809.1| hydroxyproline-rich glycoprotein homolog [Arabidopsis thaliana] gi|20148429|gb|AAM10105.1| hydroxyproline-rich glycoprotein homolog [Arabidopsis thaliana] gi|21554367|gb|AAM63474.1| hydroxyproline-rich glycoprotein-like protein [Arabidopsis thaliana] gi|332658117|gb|AEE83517.1| FRIGIDA-like protein [Arabidopsis thaliana]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/361 (72%), Positives = 304/361 (84%), Gaps = 5/361 (1%)

Query: 1   MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
           M S PDPGEL + +  SF EFQ+Q SLMTSC LLWKELS+HFTS+EQNL KKS ALR  I
Sbjct: 1   MESSPDPGELIKSSQPSFFEFQKQASLMTSCNLLWKELSEHFTSMEQNLMKKSEALRQMI 60

Query: 61  QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELGD---GEVDDG 117
           +TLD QT++S+++LK REVTID SVEIA  K+E+R  A L+S+ + ++ GD   GEVDDG
Sbjct: 61  ETLDNQTQSSIELLKHREVTIDHSVEIAEGKVEERVRAALDSLEKARDCGDEDTGEVDDG 120

Query: 118 DGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFP 177
           DGLL  L S CLKM+ARGFW FV+ +KKE+E LR+ +P AL +CVDP K V+EA+SEVFP
Sbjct: 121 DGLLSALKSLCLKMDARGFWGFVIARKKELENLRSQIPVALVDCVDPPKLVLEAVSEVFP 180

Query: 178 VDKRS--DKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASL 235
           VDKR   +K  ND GWACV++LESLIPVMVDPV+GK R+LVTPSVKEKAKEIAE WKASL
Sbjct: 181 VDKRGGGEKVSNDFGWACVVILESLIPVMVDPVMGKSRLLVTPSVKEKAKEIAETWKASL 240

Query: 236 EERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDK 295
           EERGGIENVKTPDVHTFLQ LVTFGIVKK+D+ LYRKLVVGSAWRKQMPKLAVS+GLGD+
Sbjct: 241 EERGGIENVKTPDVHTFLQHLVTFGIVKKDDLALYRKLVVGSAWRKQMPKLAVSVGLGDQ 300

Query: 296 MPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRA 355
           MP+MIEELI RGQQLDAVHFT+EVGLV  FPPVPLLKA+L+DAKKA   I +D NN+GR+
Sbjct: 301 MPDMIEELIIRGQQLDAVHFTFEVGLVHLFPPVPLLKAYLRDAKKATALITDDSNNSGRS 360

Query: 356 A 356
           A
Sbjct: 361 A 361

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
TAIR|locus:2087872	532	AT3G22440 "AT3G22440" [Arabido	0.861	0.667	0.685	2.3e-126
TAIR|locus:2130429	532	AT4G14900 [Arabidopsis thalian	0.864	0.669	0.662	8.3e-122
TAIR|locus:1005716104	558	AT5G48385 "AT5G48385" [Arabido	0.497	0.367	0.327	1.2e-34
TAIR|locus:2171327	470	FRL1 "FRIGIDA like 1" [Arabido	0.458	0.402	0.256	1.5e-11
TAIR|locus:2181251	948	AT5G27230 [Arabidopsis thalian	0.398	0.172	0.328	2.7e-11
TAIR|locus:2826175	473	FRL2 "AT1G31814" [Arabidopsis	0.451	0.393	0.245	7.6e-10
TAIR|locus:2181241	1181	AT5G27220 "AT5G27220" [Arabido	0.398	0.138	0.268	1e-05

TAIR|locus:2087872 AT3G22440 "AT3G22440" [Arabidopsis thaliana (taxid:3702)]

 Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
 Identities = 248/362 (68%), Positives = 281/362 (77%)

Query:     1 MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
             MGS+PDPGEL+EL   SF+EFQ+QTSLMTSCTLLW+ELSDHFTSLEQNL KKS AL+  I
Sbjct:     1 MGSVPDPGELTELAQPSFEEFQKQTSLMTSCTLLWQELSDHFTSLEQNLMKKSEALKQMI 60

Query:    61 QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISR-----GQXXXXXXXX 115
             +TLD QT+ SL+ LK+REVTID SVEI   K+ +R  A L S+ +     G         
Sbjct:    61 ETLDNQTQTSLESLKRREVTIDHSVEIVAGKVGERARAALESLEKARDGCGDGSNDDSGD 120

Query:   116 XXXXXXMI--LMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAIS 173
                   ++  L S CLKM+ARGFW FV  +KKE+E LR+ +PAAL +CVDPA  V+EAIS
Sbjct:   121 VDDEEGLLSALKSLCLKMDARGFWNFVTARKKELENLRSKIPAALVDCVDPAMLVLEAIS 180

Query:   174 EVFPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKA 233
             EVFPVD R DK  ND GWACV++LESL PV+VDPVIGK R+LVTPSVKEKAKEIAE WK 
Sbjct:   181 EVFPVDTRGDKVSNDYGWACVVILESLTPVIVDPVIGKSRLLVTPSVKEKAKEIAETWKK 240

Query:   234 SLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLG 293
             SLEERG IENVKTPDVHTFLQ LVTFGIVK ED+ LYRKLVVGSAWRKQMPKLAVS+GLG
Sbjct:   241 SLEERGRIENVKTPDVHTFLQHLVTFGIVKSEDLALYRKLVVGSAWRKQMPKLAVSVGLG 300

Query:   294 DKMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPXXXXXXXXXXXXXVSILEDPNNAG 353
             D+MP+MIEELISRGQQLDAVHFTYEVGLVDKFPPVP              SI+ED +N G
Sbjct:   301 DQMPDMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAYLRDAKKSAASIMEDSSNTG 360

Query:   354 RA 355
             RA
Sbjct:   361 RA 362

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2130429 AT4G14900 [Arabidopsis thaliana (taxid:3702)]

 Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
 Identities = 239/361 (66%), Positives = 280/361 (77%)

Query:     1 MGSIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKI 60
             M S PDPGEL + +  SF EFQ+Q SLMTSC LLWKELS+HFTS+EQNL KKS ALR  I
Sbjct:     1 MESSPDPGELIKSSQPSFFEFQKQASLMTSCNLLWKELSEHFTSMEQNLMKKSEALRQMI 60

Query:    61 QTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQXXXXXXXXXXXXX 120
             +TLD QT++S+++LK REVTID SVEIA  K+E+R  A L+S+ + +             
Sbjct:    61 ETLDNQTQSSIELLKHREVTIDHSVEIAEGKVEERVRAALDSLEKARDCGDEDTGEVDDG 120

Query:   121 XMILM---SYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFP 177
               +L    S CLKM+ARGFW FV+ +KKE+E LR+ +P AL +CVDP K V+EA+SEVFP
Sbjct:   121 DGLLSALKSLCLKMDARGFWGFVIARKKELENLRSQIPVALVDCVDPPKLVLEAVSEVFP 180

Query:   178 VDKRS--DKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASL 235
             VDKR   +K  ND GWACV++LESLIPVMVDPV+GK R+LVTPSVKEKAKEIAE WKASL
Sbjct:   181 VDKRGGGEKVSNDFGWACVVILESLIPVMVDPVMGKSRLLVTPSVKEKAKEIAETWKASL 240

Query:   236 EERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDK 295
             EERGGIENVKTPDVHTFLQ LVTFGIVKK+D+ LYRKLVVGSAWRKQMPKLAVS+GLGD+
Sbjct:   241 EERGGIENVKTPDVHTFLQHLVTFGIVKKDDLALYRKLVVGSAWRKQMPKLAVSVGLGDQ 300

Query:   296 MPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPXXXXXXXXXXXXXVSILEDPNNAGRA 355
             MP+MIEELI RGQQLDAVHFT+EVGLV  FPPVP               I +D NN+GR+
Sbjct:   301 MPDMIEELIIRGQQLDAVHFTFEVGLVHLFPPVPLLKAYLRDAKKATALITDDSNNSGRS 360

Query:   356 A 356
             A
Sbjct:   361 A 361

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:1005716104 AT5G48385 "AT5G48385" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
 Identities = 69/211 (32%), Positives = 114/211 (54%)

Query:   124 LMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDK-RS 182
             L+  C  M++ G  KFV   +K +  L+  +P A     +PA  V++++   +P++   +
Sbjct:   175 LLKLCGDMDSTGLHKFVSDNRKNLASLKEEIPMAFRAAANPASLVLDSLEGFYPMEAPTA 234

Query:   183 D--KSGNDLGW--ACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEER 238
             D  K  N LG    C++++E L  ++       + ++++ +VK +AK IAE W   LE  
Sbjct:   235 DGKKDANLLGMRRTCIMLMECLSILLSGLDRNCLAVVLSQNVKHRAKTIAEGWNPLLESL 294

Query:   239 G-GIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMP 297
                  N  + + H FLQLL TF IV     D   KL+   + R+Q  +L  SLGL +KMP
Sbjct:   295 DMDACNGNSLEAHAFLQLLATFAIVADFKEDELLKLIPMVSRRRQAAELCRSLGLAEKMP 354

Query:   298 EMIEELISRGQQLDAVHFTYEVGLVDKFPPV 328
              +IE L++ G+Q+DAV+  +   L ++F PV
Sbjct:   355 GVIEVLVNSGKQIDAVNLAFAFELTEQFSPV 385

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171327 FRL1 "FRIGIDA like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
 Identities = 53/207 (25%), Positives = 95/207 (45%)

Query:   124 LMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSD 183
             L + C K++  G  K+++    +   L   + AA+    D A  V++AI         S 
Sbjct:   101 LRALCEKIDGIGLIKYLIRIWDDETPLNQEVSAAIRYSPDTASMVLDAIEGSNYTPSSSG 160

Query:   184 KSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIEN 243
             +S  D+    VL++E LI +  +         +T   + +AK++A  WK+ +        
Sbjct:   161 RSF-DVRRVFVLLMEVLIEINAN---------ITVDTRNRAKKLAYHWKSKV-------G 203

Query:   244 VKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDK-MPEMIEE 302
             VK  +   FL L+  F +  + D +     V   A  KQ   +   +G+  K + ++I+ 
Sbjct:   204 VKPFEALVFLHLVAAFELGSEFDTEELSDYVFMIAKYKQATLVCNKIGVDRKRVGKLIKT 263

Query:   303 LISRGQQLDAVHFTYEVGLVDKFPPVP 329
             L+  G+ + AV F YE G+ D+F P+P
Sbjct:   264 LLDSGKPILAVKFMYECGMTDEFEPIP 290

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2181251 AT5G27230 [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
 Identities = 62/189 (32%), Positives = 88/189 (46%)

Query:   145 KEIEELRNALPAALSECV-DPAKFVMEAISEVFPVDKRSDKSGNDL--GWACVLVLESLI 201
             KE E+L NAL     +C  DPAK  ++    + P +         L    +C L+L  L 
Sbjct:   563 KESEDLSNAL-----KCTPDPAKLFLDTSMALCPTNTEGGYEFKMLITSASCSLLLNQLK 617

Query:   202 PVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASL--EERGGIENVKTPDVHTFLQLLVTF 259
              ++  P IG       P VK  AK++A  WK  +   +R  +E      V  FLQ L  F
Sbjct:   618 KLL--PKIGH------P-VKGDAKKLAVYWKDKIAKSKRDQLE------VICFLQFLGIF 662

Query:   260 GIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEV 319
             GIV +   D    L+  S W+   P L   LGL D +P  I+ LI  G ++ A+ + Y  
Sbjct:   663 GIVSEFKADDLLGLLDNSYWQTVSPDLCQFLGLDDAIPGFIQNLIKTGHRIKAIDYIYSF 722

Query:   320 GLVDKFPPV 328
             G+V +F PV
Sbjct:   723 GMVHRFQPV 731

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2826175 FRL2 "AT1G31814" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
 Identities = 52/212 (24%), Positives = 99/212 (46%)

Query:   124 LMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSD 183
             L  +C K + +G   +++   ++   +   LP A+    +PA  V++AI   +     S 
Sbjct:    90 LRKFCEKNDGKGLGNYMIENSRKRLSINEELPNAIRCSENPAPLVLDAIEGSYHCSSPSS 149

Query:   184 KSGN---DLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGG 240
              S     D+    VL+LE+LI +  +         +T  ++E+A+ IA  WK ++   G 
Sbjct:   150 SSSARAIDVKRIFVLLLEALIEINAN---------LTNDLRERARTIAYDWKPNI---GN 197

Query:   241 IENVKTPDVHTFLQLLVTF---GIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLG-DKM 296
                 K  +   FL L+  F    +   E++  Y  L+  S + KQ   +   +GL  +++
Sbjct:   198 ----KPSEALGFLHLVAAFELGSLFSTEEICDYIFLI--SKY-KQATTICKKIGLDRNRI 250

Query:   297 PEMIEELISRGQQLDAVHFTYEVGLVDKFPPV 328
               ++++ +  G+ L A+ F YE  +V +F PV
Sbjct:   251 GVLVQKFLDTGRLLVAIRFIYENEMVGEFEPV 282

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

TAIR|locus:2181241 AT5G27220 "AT5G27220" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
 Identities = 48/179 (26%), Positives = 83/179 (46%)

Query:   152 NALPAALSECVDPAKFVMEAIS-EVFPVDKRSDKSGNDLGWACVLVLESLIPVMVD-PVI 209
             N +   L   +DPA +V+  ++ E+    +R +     LG A   V+++LIP++ + P +
Sbjct:   861 NEVFTGLQGMIDPASYVLNVVNDELLGAQQRGE-----LGLA-EPVIKTLIPLLEELPRV 914

Query:   210 GKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDL 269
              K     +  +   A ++A RW   +   G    +   +   FLQL+V +G+V     D 
Sbjct:   915 VKS----SKHLLSDALQVATRWSWMM---GNSTQMSPLEAWGFLQLIVAYGLVHATSQDN 967

Query:   270 YRKLVVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPV 328
               +     A  KQ PKL  SLGL   MP ++++L+       A+ F +   L   F P+
Sbjct:   968 TLRFASYVAHFKQAPKLFESLGLSYAMPNLVKKLLDERHYFMAIRFIFYFKLKFNFSPL 1026

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VIII.677.1 hypothetical protein (507 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	412
pfam07899	293	pfam07899, Frigida, Frigida-like protein	1e-90

>gnl|CDD|219629 pfam07899, Frigida, Frigida-like protein

 Score =  275 bits (705), Expect = 1e-90
 Identities = 114/242 (47%), Positives = 152/242 (62%), Gaps = 11/242 (4%)

Query: 111 DGEVDDGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVME 170
                D +GL   L   C KM++RG  KFV+  +KE+  LR  +PAAL    DPAK V++
Sbjct: 2   SEPSSDEEGLNPELRRLCEKMDSRGLLKFVIENRKELASLREEVPAALRCAPDPAKLVLD 61

Query: 171 AISEVFPVDKRSDKSGN--DLGWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIA 228
           AI   +P D +  K     D+  +CVL+LE L+          +   ++P VKE+AK++A
Sbjct: 62  AIEGFYPPDSKGGKEDKMVDVRRSCVLLLEQLVR---------VNPPISPDVKEEAKKLA 112

Query: 229 ERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAV 288
             WKA LEE GG+EN K+ +   FLQLL  FG+V + D D   KL V  + RKQ P+L  
Sbjct: 113 VEWKAKLEEDGGVENGKSLEALGFLQLLAAFGLVSEFDQDELLKLFVMVSRRKQAPELCR 172

Query: 289 SLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILED 348
           SLGL DKMP++IEELI RG+Q+DAV F YE GLVDKFPPV LLKA+L+DAKK+A  +  +
Sbjct: 173 SLGLADKMPDLIEELIKRGRQIDAVRFIYEFGLVDKFPPVSLLKAYLEDAKKSAKKVCRE 232

Query: 349 PN 350
            +
Sbjct: 233 NS 234

This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana. This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time. Length = 293

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	412
PF07899	290	Frigida: Frigida-like protein; InterPro: IPR012474	100.0
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	95.56

>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT)

Probab=100.00  E-value=6.2e-83  Score=628.09  Aligned_cols=259  Identities=42%  Similarity=0.657  Sum_probs=243.5

Q ss_pred             CcchhHHHHHHHhhhcchHHHHHHHHhhhchhHHHHhhHHHHhhcCCChhhHHHHHhhcccCCCCCCC--CCCchhHHHH
Q 015177          116 DGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSD--KSGNDLGWAC  193 (412)
Q Consensus       116 ~~~~~~~~L~~lCe~MD~~gL~~fi~~~~ke~~~lr~Eip~ALr~ApDPAkLVLdai~~fy~~~~~~~--~~~~~~~~aC  193 (412)
                      ...+++++|+.||++|||+||++||++|+|++.+||+|+|+||++|||||+||||||+|||+++.+.+  ....+.+|+|
T Consensus         7 ~~~~~~~~L~~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~~~~~~~~~~r~~c   86 (290)
T PF07899_consen    7 VEVKPRPELKSLCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKNKKDSKLVDVRRAC   86 (290)
T ss_pred             CCcchHHHHHHHHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCccccccCcchhhHHHHH
Confidence            35568999999999999999999999999999999999999999999999999999999999876543  3355789999


Q ss_pred             HHHHHhhcccccCcccccccCCCChhHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHHHHHhcCCCccCHHHHHHH
Q 015177          194 VLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKL  273 (412)
Q Consensus       194 ilLLE~L~~~l~~p~~g~~~p~v~~~vke~Ak~lA~~WK~~l~~~g~~~~~~~lea~gFLqlla~fGI~seFd~del~~L  273 (412)
                      |+|||+|++         .+|.++|+||++|+++|.+||++|+   +.++.+++|||||||||++|||+++||.|||++|
T Consensus        87 ilLLE~L~~---------~~~~is~~vke~A~~lA~~WK~~l~---~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~L  154 (290)
T PF07899_consen   87 ILLLEQLMR---------ISPEISPEVKEEAKKLAEEWKSKLD---GVNNENSLEALGFLQLLAAFGIVSEFDEDELLKL  154 (290)
T ss_pred             HHHHHHHhh---------cCCCCCHHHHHHHHHHHHHHHHHHH---hcccCCCHHHHHHHHHHHHcCCccccCHHHHHHH
Confidence            999999986         3578999999999999999999996   4567889999999999999999999999999999


Q ss_pred             hhccccccchHHHHHHcCCCCChHHHHHHHHhcCcchHHHHHHHHhcCCcCCCChHHHHHHHHHHHHHHHHHhcCCCchh
Q 015177          274 VVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAG  353 (412)
Q Consensus       274 v~~va~rkq~~eL~~sLGL~~KmpdiI~~LI~~Gk~ieAV~f~~aF~L~dkFpPvpLLK~yl~~akk~a~~i~~~~~~~~  353 (412)
                      |..+++|+|+|+||++|||++||||||++||++||||+||+|||+|||+||||||||||+||+++|++++.++++++++ 
T Consensus       155 v~~va~~~~a~~L~~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~~f~L~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~-  233 (290)
T PF07899_consen  155 VVSVARRKQAPELCRSLGLSDKMPDIVEKLIKKGKQIEAVRFIYAFGLVDKFPPVPLLKSYLEDSKKAAKRIRKKGNSS-  233 (290)
T ss_pred             HHHhcchHhhHHHHHHcCchhhhHHHHHHHHHCCCccchHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCh-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999888877 


Q ss_pred             hhhhhhhhhhhhhhhhHHHHHhhhhcccccCCCCc
Q 015177          354 RAALWKVEAQDVGNFCTFISYTLLHAKSSQLSGPS  388 (412)
Q Consensus       354 ~~~~~~~~~~ela~L~~vik~ie~~kl~s~~~~~~  388 (412)
                       ..+++++++|+++||+||||||+||+||++|...
T Consensus       234 -~a~~ea~~kel~aL~~vikcIee~kLes~~~~~~  267 (290)
T PF07899_consen  234 -EAQNEANEKELAALKSVIKCIEEHKLESEFPLEP  267 (290)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhccccccChHH
Confidence             7889999999999999999999999999998775

This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=95.56  E-value=0.034  Score=51.74  Aligned_cols=80  Identities=24%  Similarity=0.331  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhcCCCccCHHHHHHHhhcccc-----ccchHHHHHHcCCCCChHHHHHHHHhcCcchHHHHHHHHhcCCcC
Q 015177          250 HTFLQLLVTFGIVKKEDVDLYRKLVVGSAW-----RKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDK  324 (412)
Q Consensus       250 ~gFLqlla~fGI~seFd~del~~Lv~~va~-----rkq~~eL~~sLGL~~KmpdiI~~LI~~Gk~ieAV~f~~aF~L~dk  324 (412)
                      ...|+.+..|++.+  |...+...+.+...     ++-+...++.||..+  ..||+.|+.+|++++|++||...+-++.
T Consensus        45 ~~~L~qllq~~Vi~--DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~--~~iievLL~~g~vl~ALr~ar~~~~~~~  120 (167)
T PF07035_consen   45 FSQLHQLLQYHVIP--DSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAY--EEIIEVLLSKGQVLEALRYARQYHKVDS  120 (167)
T ss_pred             HHHHHHHHhhcccC--CcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhH--HHHHHHHHhCCCHHHHHHHHHHcCCccc
Confidence            47788888999998  77776665554432     223445556666554  3577899999999999999999999999


Q ss_pred             CCChHHHHH
Q 015177          325 FPPVPLLKA  333 (412)
Q Consensus       325 FpPvpLLK~  333 (412)
                      .||.-+|.+
T Consensus       121 ~~~~~fLeA  129 (167)
T PF07035_consen  121 VPARKFLEA  129 (167)
T ss_pred             CCHHHHHHH
Confidence            998766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	412
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 66/433 (15%), Positives = 138/433 (31%), Gaps = 129/433 (29%)

Query: 19  DEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQTKASLDVLKKRE 78
              +    L+      W   SDH ++++  +    A LR  ++      +  L VL    
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK--SKPYENCLLVL--LN 252

Query: 79  V------------------TIDGSV----------EIAMEKL-----EDRTEATLNSI-- 103
           V                  T    V           I+++        D  ++ L     
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 104 SRGQELGDGEVDDGDGLLMILMSYCLK-MEARGFWKFVVTKKKEIEELRNALPAALSECV 162
            R Q+L   EV   +   + +++  ++   A   W     K    ++L   + ++L   +
Sbjct: 313 CRPQDLPR-EVLTTNPRRLSIIAESIRDGLAT--WDN--WKHVNCDKLTTIIESSL-NVL 366

Query: 163 DPAK----FVMEAISEVFPVDKRSDKSGNDLGWACVLVLESLIPVMVDPVIGKMRMLVTP 218
           +PA+    F   ++   FP                     + IP ++      + ++   
Sbjct: 367 EPAEYRKMFDRLSV---FPPS-------------------AHIPTIL------LSLIWFD 398

Query: 219 SVKEKAKEIAERW-KASLEERGGIENVKT-PDVHTFLQLLVTFGIVKKEDVDLYRKLVVG 276
            +K     +  +  K SL E+   E+  + P ++  L+L V      + +  L+R +V  
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY--LELKVKL----ENEYALHRSIVD- 451

Query: 277 SAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTY------EVGLVDKFPPVPL 330
                 +PK   +    D +P  +++           H  +          +  F  V L
Sbjct: 452 ---HYNIPK---TFDSDDLIPPYLDQYF-------YSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 331 LKAFLK----------DAKKAAVSILED---------PNNAGRAALWKVEAQDVGNFCTF 371
              FL+          +A  + ++ L+           N+     L       + +F   
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN----AILDFLPK 554

Query: 372 ISYTLLHAKSSQL 384
           I   L+ +K + L
Sbjct: 555 IEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 66/434 (15%), Positives = 126/434 (29%), Gaps = 126/434 (29%)

Query: 36  KELSDHFTSLEQNLQKKSAALRHKIQTLD--TQTKASLDVLK-KREVTIDGSVEIAMEK- 91
           K++ D     +  L      + H I + D  + T      L  K+E  +   VE  +   
Sbjct: 36  KDVQD---MPKSIL--SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90

Query: 92  ---LEDRTEATLNSISRGQELGDGEVDDGDGLLMILMSYCLKMEARGFWKFVVTKKKEIE 148
              L    +      S    +   + D             L  + + F K+ V++ +   
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDR------------LYNDNQVFAKYNVSRLQPYL 138

Query: 149 ELRNALPAALSECVDPAKFV----MEAI------SEVFPVDKRSDKSGNDLGW------- 191
           +LR AL       + PAK V    +          +V    K   K    + W       
Sbjct: 139 KLRQAL-----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 192 ---ACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGG------IE 242
                + +L+ L+   +DP     R   + ++K +   I    +  L+ +        + 
Sbjct: 194 SPETVLEMLQKLL-YQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 243 NVKTPDV-HTFL---QLLVT------------------------FGIVKKEDVDLYRKLV 274
           NV+     + F    ++L+T                          +   E   L  K  
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-Y 310

Query: 275 VG---SAWRKQMPK---LAVSLGLGDKMPEMIEELISRGQ-----QLDAVHFTYEVGLVD 323
           +        +++       +S+     + E I + ++          D +    E  L +
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSI-----IAESIRDGLATWDNWKHVNCDKLTTIIESSL-N 364

Query: 324 KFPPVPLLKA-------FLKDAK-KAAVSILEDPNNAGRAALW-KVEAQDVGNF-CTFIS 373
              P    +        F   A     +  L          +W  V   DV         
Sbjct: 365 VLEP-AEYRKMFDRLSVFPPSAHIPTIL--LS--------LIWFDVIKSDVMVVVNKLHK 413

Query: 374 YTLL--HAKSSQLS 385
           Y+L+    K S +S
Sbjct: 414 YSLVEKQPKESTIS 427

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00