Citrus Sinensis ID: 015329

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MLSLRPNRRFCHTAAAAAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSKS
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHcHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEcHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mlslrpnrrfCHTAAAAAADAIALNNIRavslnkfpnreplvdkpleppalvklkaerDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQkslpqgrrEGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVpekfhiqfdIFSFNIVIKAFCEMGILDKAYLVMVEMQklgvkpdviTYTTLISAFykdnrpeignGLWNLMvckgcfpnlaTFNVRIQHLVNKRRSWQANKLMGLMqrfgiepdevTYNLVIKGFCRSGHLDMAKKVYSAMLgrrlmpnrKIYQTMIHYLCQEGDFNLAYIMCkdsmkknwvpSVDTISALLEGlkknnqpckaNTIMALVQrrvphfssnqLSAFKSILSKS
Flexible Loop (DISEMBL)
MLSLRPNRRFCHTAAAAAADAIALNNIRAVSLNKfpnreplvdkplepPALVKLKAERDPEKLFQLFkanahnrivienkyafeDTVSRLAGARRFDYIEHLLehqkslpqgrreGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRrvphfssnqlsafksilsks
Low Complexity Region (SEG)
MLSLRPNRRFCHTaaaaaadaiaLNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSKS
Disordered region (IsUnstruct)
********RFCHTAAAAAADAIALNNIRAVSLNKF*************************EKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP*****************
Disordered Region (DISOPRED)
**************AAAAADAIAL*****************VDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSKS
Disordered Region (DISEMBL)
MLSLRPNRRFCHTAAAAAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSKS
Disordered Region (DISPRO)
***LRPNRRFCHTAAAAAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSKS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSLRPNRRFCHTAAAAAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	409	2.2.26 [Sep-21-2011]
Q8GW57	397	Pentatricopeptide repeat-	yes	no	0.970	1.0	0.625	1e-145
Q8LE47	408	Pentatricopeptide repeat-	no	no	0.865	0.867	0.321	2e-56
Q9M065	412	Pentatricopeptide repeat-	no	no	0.909	0.902	0.325	9e-56
Q9LG23	398	Pentatricopeptide repeat-	no	no	0.872	0.896	0.303	2e-50
Q9ZU67	418	Pentatricopeptide repeat-	no	no	0.826	0.808	0.324	7e-48
Q9SAB4	405	Pentatricopeptide repeat-	no	no	0.823	0.832	0.304	1e-47
Q9LK57	394	Pentatricopeptide repeat-	no	no	0.892	0.926	0.286	1e-47
Q9LK58	551	Pentatricopeptide repeat-	no	no	0.628	0.466	0.339	2e-44
Q9LQQ1	459	Pentatricopeptide repeat-	no	no	0.794	0.708	0.287	2e-33
Q9FFE3	535	Pentatricopeptide repeat-	no	no	0.738	0.564	0.276	3e-32

>sp|Q8GW57|PP134_ARATH Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidopsis thaliana GN=At1g80150 PE=2 SV=2

 Score =  514 bits (1324), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 254/406 (62%), Positives = 306/406 (75%), Gaps = 9/406 (2%)

Query: 1   MLSLRPNRRFCHTAAAAAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDP 60
           MLSLR  RRFCH  ++AA   IA  +  +  +           KPLE PALVKLK+ERDP
Sbjct: 1   MLSLRHIRRFCHFPSSAAT-GIAYVSTESNQIQGL--------KPLEEPALVKLKSERDP 51

Query: 61  EKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMR 120
           EKL+ LFKANA NR+VIEN++AFEDTVSRLAGA R D+IE LLEHQK+LPQGRREGFI+R
Sbjct: 52  EKLYNLFKANATNRLVIENRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGRREGFIVR 111

Query: 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKF 180
           I+MLYGKAGM K A+DTF++M LYGCKR+VKS NAAL+VL+ + DL  I  FL + P K+
Sbjct: 112 IIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKY 171

Query: 181 HIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIG 240
            I  D  SFNI IK+FCE+GILD AY+ M EM+K G+ PDV+TYTTLISA YK  R  IG
Sbjct: 172 GIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLTPDVVTYTTLISALYKHERCVIG 231

Query: 241 NGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG 300
           NGLWNLMV KGC PNL TFNVRIQ LVN+RR+W AN L+ LM +  +EPD +TYN+VIKG
Sbjct: 232 NGLWNLMVLKGCKPNLTTFNVRIQFLVNRRRAWDANDLLLLMPKLQVEPDSITYNMVIKG 291

Query: 301 FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS 360
           F  +   DMA++VY+AM G+   PN KIYQTMIHYLC+ G+F+LAY MCKD M+K W P+
Sbjct: 292 FFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWYPN 351

Query: 361 VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSIL 406
           +DT+  LL+GL K  Q  +A +IM LV RRVP F S QL + KSIL
Sbjct: 352 LDTVEMLLKGLVKKGQLDQAKSIMELVHRRVPPFRSKQLLSLKSIL 397

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LE47|PPR87_ARATH Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana GN=PPR336 PE=2 SV=2

 Score =  219 bits (559), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/355 (32%), Positives = 208/355 (58%), Gaps = 1/355 (0%)

Query: 37  NREPLVDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRF 96
           ++ PL  K     AL  LK+E+DP+++ ++ +A +       ++ AF   V  LA  + F
Sbjct: 37  SKTPLTSKEKSKAALSLLKSEKDPDRILEICRAASLTPDCRIDRIAFSAAVENLAEKKHF 96

Query: 97  DYIEHLLE-HQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNA 155
             + +LL+   ++ P  + E F    ++LY +A M+ H++  F D+  +   RTVKSLNA
Sbjct: 97  SAVSNLLDGFIENRPDLKSERFAAHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNA 156

Query: 156 ALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL 215
            L     ++D K  +   +E+P+ + I+ D+ ++N +IK FCE G    +Y ++ EM++ 
Sbjct: 157 LLFACLVAKDYKEAKRVYIEMPKMYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMERK 216

Query: 216 GVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQA 275
           G+KP+  ++  +IS FY +++ +    +  +M  +G    ++T+N+RIQ L  +++S +A
Sbjct: 217 GIKPNSSSFGLMISGFYAEDKSDEVGKVLAMMKDRGVNIGVSTYNIRIQSLCKRKKSKEA 276

Query: 276 NKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHY 335
             L+  M   G++P+ VTY+ +I GFC     + AKK++  M+ R   P+ + Y T+I+Y
Sbjct: 277 KALLDGMLSAGMKPNTVTYSHLIHGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYY 336

Query: 336 LCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRR 390
           LC+ GDF  A  +CK+SM+KNWVPS   + +L+ GL K+++  +A  ++  V+ +
Sbjct: 337 LCKGGDFETALSLCKESMEKNWVPSFSIMKSLVNGLAKDSKVEEAKELIGQVKEK 391

May be involved in translation through its association with polysomes. Could bind RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M065|PP352_ARATH Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1 SV=1

 Score =  218 bits (554), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 128/393 (32%), Positives = 206/393 (52%), Gaps = 21/393 (5%)

Query: 2   LSLRPNRRFCHTAAAAAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDPE 61
           +SLR  RRF   AA     A +   I   S++K               A   L+ E DP+
Sbjct: 6   ISLRLVRRFASAAADGTTTAPSSGKI---SVSK---------------AKSTLRKEHDPD 47

Query: 62  KLFQLF-KANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMR 120
           K  +++   + H+   + ++YA E TV RLA  RRF  IE L+E  K+ P+ + E F   
Sbjct: 48  KALKIYANVSDHSASPVSSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKIKEEPFYST 107

Query: 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKF 180
           ++  YG+A M  HAM TF  M  YG  R+  S NA L     S++   +     E+P+++
Sbjct: 108 LIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRY 167

Query: 181 H-IQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEI 239
           + I  D  S+ I+IK++C+ G  +KA  +M +MQ  G++   I +TT++S+ YK    E+
Sbjct: 168 NKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEV 227

Query: 240 GNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIK 299
            + LWN MV KGC  + A +NVRI     K    +  +L+  M   G++PD ++YN ++ 
Sbjct: 228 ADNLWNEMVKKGCELDNAAYNVRIMS-AQKESPERVKELIEEMSSMGLKPDTISYNYLMT 286

Query: 300 GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP 359
            +C  G LD AKKVY  + G    PN   ++T+I +LC    +   Y + K S+  + +P
Sbjct: 287 AYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIP 346

Query: 360 SVDTISALLEGLKKNNQPCKANTIMALVQRRVP 392
             +T+  L+ GL +N +   A  ++  V+++ P
Sbjct: 347 DFNTLKHLVVGLVENKKRDDAKGLIRTVKKKFP 379

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LG23|PPR82_ARATH Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1 SV=1

 Score =  200 bits (508), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 196/366 (53%), Gaps = 9/366 (2%)

Query: 32  LNKFPNREPLVDKP------LEPP--ALVKL-KAERDPEKLFQLFKANAHNRIVIENKYA 82
           + +F +   +V +P      + PP  +L  L   ER+P+++ + FK    +     N   
Sbjct: 17  IRRFSSAATVVSEPTAVTAAISPPQKSLTSLVNGERNPKRIVEKFKKACESERFRTNIAV 76

Query: 83  FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMH 142
           ++ TV RL  A+R  Y+E +LE QK      +EGF  RI+ LYGKAGM ++A   F +M 
Sbjct: 77  YDRTVRRLVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMP 136

Query: 143 LYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGIL 202
              CKR+V S NA L     S+    ++    E+P K  I+ DI S+N +IKA CE   L
Sbjct: 137 NRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSL 196

Query: 203 DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVR 262
            +A  ++ E++  G+KPD++T+ TL+ + Y   + E+G  +W  MV K    ++ T+N R
Sbjct: 197 PEAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNAR 256

Query: 263 IQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRL 322
           +  L N+ +S +   L G ++  G++PD  ++N +I+G    G +D A+  Y  ++    
Sbjct: 257 LLGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGY 316

Query: 323 MPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANT 382
            P++  +  ++  +C+ GDF  A  + K++  K ++    T+  L++ L K ++  +A  
Sbjct: 317 RPDKATFALLLPAMCKAGDFESAIELFKETFSKRYLVGQTTLQQLVDELVKGSKREEAEE 376

Query: 383 IMALVQ 388
           I+ + +
Sbjct: 377 IVKIAK 382

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU67|PP162_ARATH Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana GN=At2g18520 PE=2 SV=1

 Score =  191 bits (486), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 187/345 (54%), Gaps = 7/345 (2%)

Query: 50  ALVKLKAERDPEKLFQLFKANAHNRIV-IENKYAFEDTVSRLAGARRFDYIEHLLEHQKS 108
           A  KL+  +DP+K   ++K+ ++N    + ++YA E TV RLA ++RF  IE L+E  K+
Sbjct: 36  AKSKLRKVQDPDKALAIYKSVSNNSTSPLSSRYAMELTVQRLAKSQRFSDIEALIESHKN 95

Query: 109 LPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKA 168
            P+ + E F+  ++  YG+A M  HAM  F +M   G  RTV S NA L     S   + 
Sbjct: 96  NPKIKTETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFER 155

Query: 169 IQAFLMEVPEKF-HIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTL 227
           +     E P+++ +I  D  S+ ++IK++C+ G  +KA  +M +M+  GV+  +I +TT+
Sbjct: 156 VPQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTI 215

Query: 228 ISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGI 287
           + + YK+   +    LW  MV KGC  +   +NVR+ +   K    +  +LM  M   G+
Sbjct: 216 LGSLYKNGLVDEAESLWIEMVNKGCDLDNTVYNVRLMNAA-KESPERVKELMEEMSSVGL 274

Query: 288 EPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYI 347
           +PD V+YN ++  +C  G +  AKKVY  +      PN   ++T+I +LC  G ++    
Sbjct: 275 KPDTVSYNYLMTAYCVKGMMSEAKKVYEGL----EQPNAATFRTLIFHLCINGLYDQGLT 330

Query: 348 MCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP 392
           + K S   + +P   T   L EGL KNN+   A  +  +V+++ P
Sbjct: 331 VFKKSAIVHKIPDFKTCKHLTEGLVKNNRMEDARGVARIVKKKFP 375

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAB4|PPR33_ARATH Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidopsis thaliana GN=At1g11630 PE=1 SV=1

 Score =  191 bits (484), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 192/338 (56%), Gaps = 1/338 (0%)

Query: 54  LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLE-HQKSLPQG 112
           LK+E +P+++ ++ ++ + +     ++  F   V  LA  + F  +  LL+   ++ P  
Sbjct: 49  LKSENNPDRILEICRSTSLSPDYHVDRIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPDP 108

Query: 113 RREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAF 172
           + E F +R ++LYG+A M+  ++ TF ++  Y   RTVKSLNA L     ++D K     
Sbjct: 109 KSESFAVRAIILYGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANRV 168

Query: 173 LMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFY 232
            +E+P+ + I+ D+ ++N +I+  CE G    +Y ++ EM++  +KP   ++  +I  FY
Sbjct: 169 YLEMPKMYGIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGFY 228

Query: 233 KDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEV 292
           K+ + +    +  +M   G    +AT+N+ IQ L  +++S +A  L+  +    + P+ V
Sbjct: 229 KEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSV 288

Query: 293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS 352
           TY+L+I GFC   +LD A  ++  M+     P+ + Y T+IH LC+ GDF  A I+C++S
Sbjct: 289 TYSLLIHGFCSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRES 348

Query: 353 MKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRR 390
           M+KNWVPS   +  L+ GL   ++  +A  ++A+V+ +
Sbjct: 349 MEKNWVPSFSVMKWLVNGLASRSKVDEAKELIAVVKEK 386

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK57|PP226_ARATH Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1 SV=1

 Score =  191 bits (484), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 185/387 (47%), Gaps = 22/387 (5%)

Query: 2   LSLRPNRRFCHTAAAAAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDPE 61
            S   NRRF     AAAA                         P +P  +  +  ERDP+
Sbjct: 15  FSTHTNRRFFSAVTAAAA----------------------TPSPPKPSLITLVNDERDPK 52

Query: 62  KLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRI 121
            + + FK         +N   +E TV RLA A++F+++E +LE Q   P   +EGF+ RI
Sbjct: 53  FITEKFKKACQAEWFRKNIAVYERTVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARI 112

Query: 122 MMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFH 181
           + LYG+ GM ++A   F +M    CKRT  S NA L     S+    ++    E+P K  
Sbjct: 113 INLYGRVGMFENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLS 172

Query: 182 IQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGN 241
           I+ D+ S+N +IK  C  G   +A  ++ E++  G+KPD IT+  L+   Y   + E G 
Sbjct: 173 IEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGE 232

Query: 242 GLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGF 301
            +W  MV K    ++ ++N R+  L  + +S +   L   ++   ++PD  T+  +IKGF
Sbjct: 233 QIWARMVEKNVKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGF 292

Query: 302 CRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSV 361
              G LD A   Y  +      P + ++ +++  +C+ GD   AY +CK+   K  +   
Sbjct: 293 VSEGKLDEAITWYKEIEKNGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDE 352

Query: 362 DTISALLEGLKKNNQPCKANTIMALVQ 388
             +  +++ L K ++  +A  I+ L +
Sbjct: 353 AVLQEVVDALVKGSKQDEAEEIVELAK 379

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1

 Score =  180 bits (456), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/268 (33%), Positives = 151/268 (56%)

Query: 87  VSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGC 146
           + RL  A++F  I+ +L++QK     + E F++RIM+LYG +GM +HA   F +M    C
Sbjct: 94  IRRLREAKKFSTIDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELNC 153

Query: 147 KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAY 206
           +RTVKS NA L     S+ L        E+PEK  I  D+ ++N +IKA C  G +D   
Sbjct: 154 ERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDIL 213

Query: 207 LVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHL 266
            +  E++K G +PD+I++ TL+  FY+      G+ +W+LM  K   PN+ ++N R++ L
Sbjct: 214 SIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGL 273

Query: 267 VNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR 326
              ++   A  L+ +M+  GI PD  TYN +I  +    +L+   K Y+ M  + L P+ 
Sbjct: 274 TRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPDT 333

Query: 327 KIYQTMIHYLCQEGDFNLAYIMCKDSMK 354
             Y  +I  LC++GD + A  + ++++K
Sbjct: 334 VTYCMLIPLLCKKGDLDRAVEVSEEAIK 361

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2 SV=1

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 166/330 (50%), Gaps = 5/330 (1%)

Query: 44  KPLEP-PALVKLKAERDPEKLFQLFKANAHNRIVIENKY-AFEDTVSRLAGARRFDYIEH 101
           KP E  P L  LK   DPE+   LF  + +  +   + Y ++   + +LA +R FD ++ 
Sbjct: 45  KPWEEVPFLTDLKEIEDPEEALSLF--HQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQ 102

Query: 102 LLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLT 161
           +L   +      RE   M ++  YGKAG +  A+D F+ +  + C RT++SLN  + VL 
Sbjct: 103 ILRLVRYRNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLV 162

Query: 162 ESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV 221
           ++ +L+  ++F  +  +   ++ +  SFNI+IK F +    + A  V  EM ++ V+P V
Sbjct: 163 DNGELEKAKSFF-DGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSV 221

Query: 222 ITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGL 281
           +TY +LI    +++       L   M+ K   PN  TF + ++ L  K    +A KLM  
Sbjct: 222 VTYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFD 281

Query: 282 MQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGD 341
           M+  G +P  V Y +++    + G +D AK +   M  RR+ P+  IY  ++++LC E  
Sbjct: 282 MEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECR 341

Query: 342 FNLAYIMCKDSMKKNWVPSVDTISALLEGL 371
              AY +  +   K   P+  T   +++G 
Sbjct: 342 VPEAYRVLTEMQMKGCKPNAATYRMMIDGF 371

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1

 Score =  140 bits (352), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 157/304 (51%), Gaps = 2/304 (0%)

Query: 79  NKYAFEDTVSRLAGARRFDYIEHLL-EHQKSLPQGR-REGFIMRIMMLYGKAGMIKHAMD 136
           N   +   + +L+ AR FD +E L+ + + S P  +  E   + ++  YG AG  + +M 
Sbjct: 82  NYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMR 141

Query: 137 TFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAF 196
            F  +  +G KR+V+SLN  L VL +++    + A      E F I  +IF+ N+++KA 
Sbjct: 142 IFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKAL 201

Query: 197 CEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNL 256
           C+   ++ AY V+ E+  +G+ P+++TYTT++  +      E    +   M+ +G +P+ 
Sbjct: 202 CKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDA 261

Query: 257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSA 316
            T+ V +       R  +A  +M  M++  IEP+EVTY ++I+  C+      A+ ++  
Sbjct: 262 TTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDE 321

Query: 317 MLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ 376
           ML R  MP+  +   +I  LC++   + A  + +  +K N +P    +S L+  L K  +
Sbjct: 322 MLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGR 381

Query: 377 PCKA 380
             +A
Sbjct: 382 VTEA 385

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
359482337	405	PREDICTED: pentatricopeptide repeat-cont	0.985	0.995	0.708	1e-170
255553141	400	pentatricopeptide repeat-containing prot	0.977	1.0	0.711	1e-169
449468996	399	PREDICTED: pentatricopeptide repeat-cont	0.975	1.0	0.684	1e-164
224070831	401	predicted protein [Populus trichocarpa]	0.980	1.0	0.677	1e-160
317106734	399	JHL06P13.10 [Jatropha curcas]	0.973	0.997	0.695	1e-157
224054128	401	predicted protein [Populus trichocarpa]	0.980	1.0	0.652	1e-155
297842851	397	pentatricopeptide repeat-containing prot	0.970	1.0	0.628	1e-144
15220068	397	pentatricopeptide repeat-containing prot	0.970	1.0	0.625	1e-143
26453140	397	unknown protein [Arabidopsis thaliana] g	0.970	1.0	0.620	1e-142
5902386	419	Hypothetical protein [Arabidopsis thalia	0.943	0.921	0.627	1e-140

>gi|359482337|ref|XP_002267057.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80150, mitochondrial-like [Vitis vinifera]

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 289/408 (70%), Positives = 336/408 (82%), Gaps = 5/408 (1%)

Query: 1   MLSLRPNRRFCHTAAAAAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDP 60
           MLSLRP RRFCH AA  A   +A     A S     N     DKPLE PALVKLKAERDP
Sbjct: 1   MLSLRPIRRFCHAAAITAIAPVAETVTSAKS-----NCIKKPDKPLEEPALVKLKAERDP 55

Query: 61  EKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMR 120
           E+LFQLFKANAHNR+V+EN++AFEDTVSRLAGA RFDYIEHLLEHQK+LPQGRREGFI+R
Sbjct: 56  ERLFQLFKANAHNRLVVENRFAFEDTVSRLAGAGRFDYIEHLLEHQKTLPQGRREGFIVR 115

Query: 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKF 180
           I+MLYGKAGMIK A+DTFYDMHL+GC+RTVKS NAALKVLT+S DL+AI  FL +VP KF
Sbjct: 116 IIMLYGKAGMIKQAVDTFYDMHLFGCQRTVKSFNAALKVLTQSYDLEAIDLFLRDVPFKF 175

Query: 181 HIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIG 240
            I+ D+FS NIVIKA C+M IL+KAY+VM+EM+K GV PDV+TYTTLISAFYK NR E+G
Sbjct: 176 GIELDVFSVNIVIKALCDMDILEKAYMVMIEMEKAGVNPDVVTYTTLISAFYKSNRWEVG 235

Query: 241 NGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG 300
           NGLWNLMV KGC PNLATFNVRIQ+LVN+RR+WQAN LMG+M+  GI PDEVTYNLVIKG
Sbjct: 236 NGLWNLMVMKGCLPNLATFNVRIQYLVNRRRAWQANSLMGMMEYLGITPDEVTYNLVIKG 295

Query: 301 FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS 360
           FC++G+L+MAKKVYSA+ G+   PN KIYQTMIHYLC+ G+F++AY MCKD M +NW  +
Sbjct: 296 FCQAGYLEMAKKVYSALHGKGYKPNVKIYQTMIHYLCKGGEFDMAYTMCKDCMNRNWSLN 355

Query: 361 VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSK 408
           VDTI  LLEGLK N +  KA  I+ L ++RVP FS NQL  F+S+LSK
Sbjct: 356 VDTIYKLLEGLKGNGEIDKAKVILRLARKRVPSFSKNQLGVFESVLSK 403

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553141|ref|XP_002517613.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223543245|gb|EEF44777.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 291/409 (71%), Positives = 343/409 (83%), Gaps = 9/409 (2%)

Query: 1   MLSLRPNRRFCHTAAAAAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDP 60
           MLSLRP RRFC++AAAA    I+  +  A   N+  N+     KPLE PAL KLKAERDP
Sbjct: 1   MLSLRPIRRFCYSAAAA----ISSTDSPAAVSNRVLNQ-----KPLEEPALAKLKAERDP 51

Query: 61  EKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMR 120
           EKLF LFKANA NR+VIEN++AFEDT+SRLAGARRFDYIEHLLEHQK+LPQGRREGFI+R
Sbjct: 52  EKLFNLFKANARNRLVIENRFAFEDTISRLAGARRFDYIEHLLEHQKTLPQGRREGFIIR 111

Query: 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKF 180
           I+MLYGKAGM KHA+DTF DMH+YGCKRTVKS NAALKVLTE+ DL+AI+AFL EVPEKF
Sbjct: 112 IIMLYGKAGMTKHAVDTFNDMHMYGCKRTVKSFNAALKVLTETCDLEAIKAFLSEVPEKF 171

Query: 181 HIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIG 240
            I  DIFS NI+IKAFC+M ILDKAYLVM++M++LG++PDV+TYTTLISAFYK++R EI 
Sbjct: 172 DIILDIFSVNIIIKAFCKMSILDKAYLVMIQMERLGIRPDVVTYTTLISAFYKNDRWEIS 231

Query: 241 NGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG 300
           NGLWNLMV KGC PNL+TFNVRIQHLVN R+SWQAN++M LM+R GI PDEVTYNLVIKG
Sbjct: 232 NGLWNLMVLKGCLPNLSTFNVRIQHLVNIRQSWQANEVMLLMERIGISPDEVTYNLVIKG 291

Query: 301 FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS 360
           F ++G+L+MA++VYSA+ G+   PN KIYQTMIH LC+ G+F+LAY MCKD MKK+W  +
Sbjct: 292 FGQAGYLEMARRVYSALHGKGYKPNVKIYQTMIHCLCKGGEFDLAYTMCKDCMKKSWFLN 351

Query: 361 VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSKS 409
           VDTI  LL+GLKKN Q  KA  I+ L QRR+P FSS QLS F S+LS+S
Sbjct: 352 VDTIHTLLDGLKKNGQLDKAKMIVTLAQRRMPPFSSKQLSIFDSLLSRS 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468996|ref|XP_004152207.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80150, mitochondrial-like [Cucumis sativus] gi|449484169|ref|XP_004156805.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80150, mitochondrial-like [Cucumis sativus]

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 280/409 (68%), Positives = 327/409 (79%), Gaps = 10/409 (2%)

Query: 1   MLSLRPNRRFCHTAAAAAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDP 60
           MLSLRP RRFCH     AA  I   +  A  LN   N      K LE PALVKLKAERDP
Sbjct: 1   MLSLRPIRRFCH-----AATVIPSTDTTAAVLNHVQN-----SKSLEEPALVKLKAERDP 50

Query: 61  EKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMR 120
           EKLF LFKANAHNR+VIEN++AFEDTVSRLAGARRFDYIEHLLEHQK+LPQGRREGFI+R
Sbjct: 51  EKLFHLFKANAHNRLVIENRFAFEDTVSRLAGARRFDYIEHLLEHQKTLPQGRREGFIIR 110

Query: 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKF 180
           I+MLYGKA MIKHA+DTFYDMHLYGC RTVKS NA LKVL +SRDL A++AFL E PEKF
Sbjct: 111 IIMLYGKAEMIKHALDTFYDMHLYGCLRTVKSFNAVLKVLMKSRDLGALEAFLSEAPEKF 170

Query: 181 HIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIG 240
            I+ DI S NI++KAFC+ G L++AYL+M+EM+KLG+KPDV+TYTTLISA YKD + EI 
Sbjct: 171 DIELDIISVNILVKAFCDFGFLNRAYLLMLEMEKLGIKPDVVTYTTLISASYKDRQSEIS 230

Query: 241 NGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG 300
           NGLWNLMV +GC PNL TFNVRIQHL+ +RR+W ANKLM +M+  GI PDEVTYNLVIKG
Sbjct: 231 NGLWNLMVLRGCLPNLTTFNVRIQHLIERRRAWDANKLMKMMRNIGIVPDEVTYNLVIKG 290

Query: 301 FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS 360
           FC++G LDMAK+VYSA+ G    PN KIYQTMIHYLC+  DFNLA+ +CKD+M KNW P+
Sbjct: 291 FCQAGLLDMAKRVYSALHGSGYKPNVKIYQTMIHYLCKSEDFNLAHTICKDAMNKNWFPN 350

Query: 361 VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSKS 409
           +DTI +LL+GL K  +  KA  I+AL ++RVP FS NQL A  + L+ S
Sbjct: 351 IDTIHSLLKGLNKMGEAGKAQLILALARKRVPPFSKNQLEALNTTLANS 399

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070831|ref|XP_002303255.1| predicted protein [Populus trichocarpa] gi|222840687|gb|EEE78234.1| predicted protein [Populus trichocarpa]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/409 (67%), Positives = 332/409 (81%), Gaps = 8/409 (1%)

Query: 1   MLSLRPNRRFCHTAAAAAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDP 60
           MLSLR  RRFC+ AA+     +AL+   A   N+  N+     KPLE PALVKLKAERDP
Sbjct: 1   MLSLRNTRRFCNFAAS-----VALSRSPAAVSNRIQNQN---QKPLEEPALVKLKAERDP 52

Query: 61  EKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMR 120
           EKLF LFKANA NR+V+EN++AFEDTVSRLAGA RFDYIEHLLEHQK LPQGRREGF++R
Sbjct: 53  EKLFNLFKANAENRLVVENRFAFEDTVSRLAGANRFDYIEHLLEHQKPLPQGRREGFMVR 112

Query: 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKF 180
           I+MLYGKAGMIKHA+DTFY+MHL+GCKRTVKS+NAALKVLT +RDL AI+AF+ E P+KF
Sbjct: 113 IIMLYGKAGMIKHAIDTFYNMHLHGCKRTVKSVNAALKVLTGTRDLAAIEAFVNEAPKKF 172

Query: 181 HIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIG 240
            I+ DIFS NI++KA CE G LDKAYL+MVEM+K GV+PDVITYTTL+SAFYK+NR EIG
Sbjct: 173 DIELDIFSVNIIVKALCETGNLDKAYLLMVEMEKSGVRPDVITYTTLMSAFYKNNRSEIG 232

Query: 241 NGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG 300
           NGLWNLMV KGC PNLATFNVRIQ+LVN RR+W AN +M LM + GI PDEVTYNLVIKG
Sbjct: 233 NGLWNLMVLKGCLPNLATFNVRIQYLVNIRRAWHANDVMRLMLKIGIVPDEVTYNLVIKG 292

Query: 301 FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS 360
           F ++G L+MAK VY ++ G+    N K+YQTM+HYLC+ G+F+LAY MC+D M+ NW  +
Sbjct: 293 FFQTGKLEMAKMVYFSLRGKGHKFNVKVYQTMVHYLCKGGEFDLAYTMCRDCMRNNWFLN 352

Query: 361 VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSKS 409
           VDTI  LLEGLKKN Q  KA  I+ L Q+RVP F S+ L + +++LS+S
Sbjct: 353 VDTIHTLLEGLKKNGQLNKAKVIVTLAQKRVPPFPSSHLRSLQAVLSRS 401

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106734|dbj|BAJ53230.1| JHL06P13.10 [Jatropha curcas]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 285/410 (69%), Positives = 330/410 (80%), Gaps = 12/410 (2%)

Query: 1   MLSLRPNRRFCHTAAA-AAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERD 59
           MLSLR  RRFCH+AAA A+ D+ A+  +   SLN         ++PLE PAL+KLKAERD
Sbjct: 1   MLSLRLTRRFCHSAAAIASTDSPAV--VSNYSLN---------NRPLEEPALIKLKAERD 49

Query: 60  PEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIM 119
           PEKLF LFKANA NR+VIEN++AFEDTVSRLAGARRF YIE+LLEHQK+LPQGRREGFI+
Sbjct: 50  PEKLFNLFKANAQNRLVIENRFAFEDTVSRLAGARRFHYIENLLEHQKTLPQGRREGFIV 109

Query: 120 RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK 179
           RI+MLY KAGM+KHA++TFYDMHLYGCKRTVKS NAALKVLT +R++ AIQ FL E PEK
Sbjct: 110 RIIMLYAKAGMVKHALNTFYDMHLYGCKRTVKSFNAALKVLTGTRNMVAIQDFLCEAPEK 169

Query: 180 FHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEI 239
           F I  DIFS NI+IKA CEMG LDKAYLVMV+ QK G++ DVITYTTLISA Y++    I
Sbjct: 170 FDITMDIFSINIIIKALCEMGYLDKAYLVMVQFQKSGIEADVITYTTLISASYRNKLWMI 229

Query: 240 GNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIK 299
           GNGLWNLMV KGC PNLATFNVRIQ+LVN R+SW+AN +M LMQR GI PD+VTYNLVIK
Sbjct: 230 GNGLWNLMVLKGCKPNLATFNVRIQYLVNSRQSWEANDVMRLMQRIGIAPDQVTYNLVIK 289

Query: 300 GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP 359
           GFC +G+L+MAK+VYSA+ G    PN KIYQTMIHYLC+ G+F+LAY MCKD M K W  
Sbjct: 290 GFCLAGYLEMAKRVYSALQGEVYKPNFKIYQTMIHYLCKGGEFDLAYTMCKDCMGKGWYL 349

Query: 360 SVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSKS 409
            VDTI ALL GL KN    KA  I+ L +R+VP FSS+QLS+F SILS S
Sbjct: 350 HVDTIHALLNGLMKNGHLGKAKLIVTLAKRKVPPFSSSQLSSFYSILSNS 399

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054128|ref|XP_002298105.1| predicted protein [Populus trichocarpa] gi|222845363|gb|EEE82910.1| predicted protein [Populus trichocarpa]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 267/409 (65%), Positives = 327/409 (79%), Gaps = 8/409 (1%)

Query: 1   MLSLRPNRRFCHTAAAAAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDP 60
           MLSLR  RRF + AAA     + L +  A   N   N+     KPLE PAL+KLKAERDP
Sbjct: 1   MLSLRVTRRFRNFAAA-----VLLTHSPAAVSNLIQNQN---QKPLEEPALLKLKAERDP 52

Query: 61  EKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMR 120
           EKLF LFKANA N++V+EN++AFEDTVSRLAGA RFDYIEHLLEHQK+LPQGRREG+++R
Sbjct: 53  EKLFNLFKANAENKLVVENRFAFEDTVSRLAGANRFDYIEHLLEHQKTLPQGRREGYMVR 112

Query: 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKF 180
           I+MLYGKAGMI+HA+DTF++MHL GCKRTVKS NAALKVLT +RDL  I+ F+ E P+KF
Sbjct: 113 IIMLYGKAGMIEHAIDTFHNMHLRGCKRTVKSFNAALKVLTGTRDLATIETFVNEAPKKF 172

Query: 181 HIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIG 240
            I+FDIFS NI++KA CE G+LDK+YL+MVEM+K GV PDVITYTTL SA+YK+N+ EIG
Sbjct: 173 DIEFDIFSVNIIVKALCERGVLDKSYLLMVEMEKSGVTPDVITYTTLTSAYYKNNKAEIG 232

Query: 241 NGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG 300
           NGLWNLMV KGC PNLATFNVRIQ+LVN RR+W AN +M LMQ+ GI PDEV+YNLV+KG
Sbjct: 233 NGLWNLMVLKGCLPNLATFNVRIQYLVNIRRAWHANDVMRLMQKIGIVPDEVSYNLVLKG 292

Query: 301 FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS 360
           F + G+L+MAK VY ++  +    N K+YQTM+HYLC+ G+F+LAY MC+D M+ NW  +
Sbjct: 293 FFQVGNLEMAKLVYFSLRCKGHKFNVKVYQTMVHYLCKGGEFDLAYTMCRDCMRTNWFLN 352

Query: 361 VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSKS 409
           VDTI  LLEGLKKN Q  KA  I+ L QRRVP F S+ LS+ +++LS+S
Sbjct: 353 VDTIHTLLEGLKKNGQLNKAKVILTLAQRRVPPFPSSHLSSMQAVLSRS 401

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842851|ref|XP_002889307.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297335148|gb|EFH65566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 255/406 (62%), Positives = 310/406 (76%), Gaps = 9/406 (2%)

Query: 1   MLSLRPNRRFCHTAAAAAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDP 60
           MLSLR  RRFCH +++AA   IA  +  +  +           KPLE PALVKLK+ERDP
Sbjct: 1   MLSLRLIRRFCHFSSSAAT-GIAYVSTDSNQIQGL--------KPLEEPALVKLKSERDP 51

Query: 61  EKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMR 120
           EKLF+LF+ANA NR+VIEN++AFEDTVSRLAGA R D+IE LLEHQK+LPQGRREGFI+R
Sbjct: 52  EKLFKLFQANATNRLVIENRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGRREGFIVR 111

Query: 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKF 180
           I+MLYGKAGM K A+DTFY+M LYGCKR+VKS NAAL+VL+   DL  I+ FL + P K+
Sbjct: 112 IIMLYGKAGMTKQALDTFYNMDLYGCKRSVKSFNAALQVLSFKPDLHTIREFLHDAPAKY 171

Query: 181 HIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIG 240
            I  D  SFNI IK+FCE+GILD AY+ M EM+K G+KPDV+TYTTLISAFYK  R  IG
Sbjct: 172 RIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLKPDVVTYTTLISAFYKHERCVIG 231

Query: 241 NGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG 300
           NGLWNLMV KGC PNL TFNVRIQ LVN+RR+W AN L+ LM +  +EPD +TYN+VIKG
Sbjct: 232 NGLWNLMVLKGCRPNLTTFNVRIQFLVNRRRAWDANDLLLLMPKLQVEPDSITYNMVIKG 291

Query: 301 FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS 360
           F  +    MA++VY+AM G+   PN KIYQTMIHYLC+ G+F+LAY MCKD M+K W P+
Sbjct: 292 FFLARFPHMAERVYTAMHGKGYKPNVKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWYPN 351

Query: 361 VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSIL 406
           +DT+  LL+GL K +Q  +A +IM LV +RVP F S QL + KSIL
Sbjct: 352 LDTVEMLLKGLVKKDQLDQAKSIMGLVHKRVPPFRSKQLLSLKSIL 397

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220068|ref|NP_178132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806404|sp|Q8GW57.2|PP134_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g80150, mitochondrial; Flags: Precursor gi|332198242|gb|AEE36363.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 254/406 (62%), Positives = 306/406 (75%), Gaps = 9/406 (2%)

Query: 1   MLSLRPNRRFCHTAAAAAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDP 60
           MLSLR  RRFCH  ++AA   IA  +  +  +           KPLE PALVKLK+ERDP
Sbjct: 1   MLSLRHIRRFCHFPSSAAT-GIAYVSTESNQIQGL--------KPLEEPALVKLKSERDP 51

Query: 61  EKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMR 120
           EKL+ LFKANA NR+VIEN++AFEDTVSRLAGA R D+IE LLEHQK+LPQGRREGFI+R
Sbjct: 52  EKLYNLFKANATNRLVIENRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGRREGFIVR 111

Query: 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKF 180
           I+MLYGKAGM K A+DTF++M LYGCKR+VKS NAAL+VL+ + DL  I  FL + P K+
Sbjct: 112 IIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKY 171

Query: 181 HIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIG 240
            I  D  SFNI IK+FCE+GILD AY+ M EM+K G+ PDV+TYTTLISA YK  R  IG
Sbjct: 172 GIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLTPDVVTYTTLISALYKHERCVIG 231

Query: 241 NGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG 300
           NGLWNLMV KGC PNL TFNVRIQ LVN+RR+W AN L+ LM +  +EPD +TYN+VIKG
Sbjct: 232 NGLWNLMVLKGCKPNLTTFNVRIQFLVNRRRAWDANDLLLLMPKLQVEPDSITYNMVIKG 291

Query: 301 FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS 360
           F  +   DMA++VY+AM G+   PN KIYQTMIHYLC+ G+F+LAY MCKD M+K W P+
Sbjct: 292 FFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWYPN 351

Query: 361 VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSIL 406
           +DT+  LL+GL K  Q  +A +IM LV RRVP F S QL + KSIL
Sbjct: 352 LDTVEMLLKGLVKKGQLDQAKSIMELVHRRVPPFRSKQLLSLKSIL 397

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26453140|dbj|BAC43646.1| unknown protein [Arabidopsis thaliana] gi|28950987|gb|AAO63417.1| At1g80150 [Arabidopsis thaliana]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 252/406 (62%), Positives = 306/406 (75%), Gaps = 9/406 (2%)

Query: 1   MLSLRPNRRFCHTAAAAAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDP 60
           MLSLR  RRFCH  ++AA   IA  +  +  +           KPLE PALVKLK+ERDP
Sbjct: 1   MLSLRHIRRFCHFPSSAAT-GIAYVSTESNQIQGL--------KPLEEPALVKLKSERDP 51

Query: 61  EKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMR 120
           EKL+ LFKANA NR+VIEN++AFEDTVSRLAGA R D+IE LLEHQK+LPQGRREGF++R
Sbjct: 52  EKLYNLFKANATNRLVIENRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGRREGFMVR 111

Query: 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKF 180
           I+MLYGKAGM K A+DTF++M LYGCKR+VKS NAAL+VL+ + DL  I  FL + P K+
Sbjct: 112 IIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKY 171

Query: 181 HIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIG 240
            I  D  SFNI IK+FCE+GILD AY+ M EM+K G+ PDV+TYTTLISA YK  R  IG
Sbjct: 172 GIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLTPDVVTYTTLISALYKHERCVIG 231

Query: 241 NGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG 300
           NGLWNL+V KGC PNL TFNVRIQ LVN+RR+W AN L+ LM +  +EPD +TYN+VIKG
Sbjct: 232 NGLWNLIVLKGCKPNLTTFNVRIQFLVNRRRAWDANDLLLLMPKLQVEPDSITYNMVIKG 291

Query: 301 FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS 360
           F  +   DMA++VY+AM G+   PN KIYQTMIHYLC+ G+F+LAY MCKD M+K W P+
Sbjct: 292 FFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWYPN 351

Query: 361 VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSIL 406
           +DT+  LL+GL K  Q  +A +IM LV RRVP F S QL + KSIL
Sbjct: 352 LDTVEMLLKGLVKKGQLDQAKSIMELVHRRVPPFRSKQLLSLKSIL 397

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5902386|gb|AAD55488.1|AC009322_28 Hypothetical protein [Arabidopsis thaliana]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/395 (62%), Positives = 299/395 (75%), Gaps = 9/395 (2%)

Query: 1   MLSLRPNRRFCHTAAAAAADAIALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDP 60
           MLSLR  RRFCH  ++AA   IA  +  +  +           KPLE PALVKLK+ERDP
Sbjct: 1   MLSLRHIRRFCHFPSSAAT-GIAYVSTESNQIQGL--------KPLEEPALVKLKSERDP 51

Query: 61  EKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMR 120
           EKL+ LFKANA NR+VIEN++AFEDTVSRLAGA R D+IE LLEHQK+LPQGRREGFI+R
Sbjct: 52  EKLYNLFKANATNRLVIENRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGRREGFIVR 111

Query: 121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKF 180
           I+MLYGKAGM K A+DTF++M LYGCKR+VKS NAAL+VL+ + DL  I  FL + P K+
Sbjct: 112 IIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKY 171

Query: 181 HIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIG 240
            I  D  SFNI IK+FCE+GILD AY+ M EM+K G+ PDV+TYTTLISA YK  R  IG
Sbjct: 172 GIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLTPDVVTYTTLISALYKHERCVIG 231

Query: 241 NGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG 300
           NGLWNLMV KGC PNL TFNVRIQ LVN+RR+W AN L+ LM +  +EPD +TYN+VIKG
Sbjct: 232 NGLWNLMVLKGCKPNLTTFNVRIQFLVNRRRAWDANDLLLLMPKLQVEPDSITYNMVIKG 291

Query: 301 FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS 360
           F  +   DMA++VY+AM G+   PN KIYQTMIHYLC+ G+F+LAY MCKD M+K W P+
Sbjct: 292 FFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWYPN 351

Query: 361 VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS 395
           +DT+  LL+GL K  Q  +A +IM LV RRVP FS
Sbjct: 352 LDTVEMLLKGLVKKGQLDQAKSIMELVHRRVPPFS 386

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
TAIR|locus:2016249	397	AT1G80150 "AT1G80150" [Arabido	0.970	1.0	0.618	2.8e-128
TAIR|locus:2036833	408	PPR336 "pentatricopeptide repe	0.863	0.865	0.331	1.8e-55
TAIR|locus:2115375	412	AT4G36680 [Arabidopsis thalian	0.848	0.842	0.338	1.7e-52
TAIR|locus:2012120	398	AT1G55890 [Arabidopsis thalian	0.855	0.879	0.313	1.1e-48
TAIR|locus:2027387	405	AT1G11630 [Arabidopsis thalian	0.823	0.832	0.304	2.3e-48
TAIR|locus:2046288	418	AT2G18520 [Arabidopsis thalian	0.819	0.801	0.324	2.3e-46
TAIR|locus:2090034	394	AT3G13160 [Arabidopsis thalian	0.841	0.873	0.296	5.6e-45
TAIR|locus:2090014	551	AT3G13150 "AT3G13150" [Arabido	0.694	0.515	0.332	5.2e-42
TAIR|locus:2026560	459	AT1G07740 "AT1G07740" [Arabido	0.792	0.705	0.288	4.6e-34
TAIR|locus:2171352	535	AT5G16420 "AT5G16420" [Arabido	0.865	0.661	0.267	1.4e-33

TAIR|locus:2016249 AT1G80150 "AT1G80150" [Arabidopsis thaliana (taxid:3702)]

 Score = 1259 (448.2 bits), Expect = 2.8e-128, P = 2.8e-128
 Identities = 251/406 (61%), Positives = 301/406 (74%)

Query:     1 MLSLRPNRRFCHTXXXXXXXXXXLNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDP 60
             MLSLR  RRFCH           ++       N+         KPLE PALVKLK+ERDP
Sbjct:     1 MLSLRHIRRFCHFPSSAATGIAYVST----ESNQIQGL-----KPLEEPALVKLKSERDP 51

Query:    61 EKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMR 120
             EKL+ LFKANA NR+VIEN++AFEDTVSRLAGA R D+IE LLEHQK+LPQGRREGFI+R
Sbjct:    52 EKLYNLFKANATNRLVIENRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGRREGFIVR 111

Query:   121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKF 180
             I+MLYGKAGM K A+DTF++M LYGCKR+VKS NAAL+VL+ + DL  I  FL + P K+
Sbjct:   112 IIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKY 171

Query:   181 HIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIG 240
              I  D  SFNI IK+FCE+GILD AY+ M EM+K G+ PDV+TYTTLISA YK  R  IG
Sbjct:   172 GIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLTPDVVTYTTLISALYKHERCVIG 231

Query:   241 NGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG 300
             NGLWNLMV KGC PNL TFNVRIQ LVN+RR+W AN L+ LM +  +EPD +TYN+VIKG
Sbjct:   232 NGLWNLMVLKGCKPNLTTFNVRIQFLVNRRRAWDANDLLLLMPKLQVEPDSITYNMVIKG 291

Query:   301 FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS 360
             F  +   DMA++VY+AM G+   PN KIYQTMIHYLC+ G+F+LAY MCKD M+K W P+
Sbjct:   292 FFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKAGNFDLAYTMCKDCMRKKWYPN 351

Query:   361 VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSIL 406
             +DT+  LL+GL K  Q  +A +IM LV RRVP F S QL + KSIL
Sbjct:   352 LDTVEMLLKGLVKKGQLDQAKSIMELVHRRVPPFRSKQLLSLKSIL 397

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036833 PPR336 "pentatricopeptide repeat 336" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 118/356 (33%), Positives = 209/356 (58%)

Query:    37 NREPLVDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRF 96
             ++ PL  K     AL  LK+E+DP+++ ++ +A +       ++ AF   V  LA  + F
Sbjct:    37 SKTPLTSKEKSKAALSLLKSEKDPDRILEICRAASLTPDCRIDRIAFSAAVENLAEKKHF 96

Query:    97 DYIEHLLE-HQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNA 155
               + +LL+   ++ P  + E F    ++LY +A M+ H++  F D+  +   RTVKSLNA
Sbjct:    97 SAVSNLLDGFIENRPDLKSERFAAHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNA 156

Query:   156 ALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL 215
              L     ++D K  +   +E+P+ + I+ D+ ++N +IK FCE G    +Y ++ EM++ 
Sbjct:   157 LLFACLVAKDYKEAKRVYIEMPKMYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMERK 216

Query:   216 GVKPDVITYTTLISAFY-KDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQ 274
             G+KP+  ++  +IS FY +D   E+G  L  +M  +G    ++T+N+RIQ L  +++S +
Sbjct:   217 GIKPNSSSFGLMISGFYAEDKSDEVGKVL-AMMKDRGVNIGVSTYNIRIQSLCKRKKSKE 275

Query:   275 ANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH 334
             A  L+  M   G++P+ VTY+ +I GFC     + AKK++  M+ R   P+ + Y T+I+
Sbjct:   276 AKALLDGMLSAGMKPNTVTYSHLIHGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIY 335

Query:   335 YLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRR 390
             YLC+ GDF  A  +CK+SM+KNWVPS   + +L+ GL K+++  +A  ++  V+ +
Sbjct:   336 YLCKGGDFETALSLCKESMEKNWVPSFSIMKSLVNGLAKDSKVEEAKELIGQVKEK 391

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IDA

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

TAIR|locus:2115375 AT4G36680 [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 120/355 (33%), Positives = 197/355 (55%)

Query:    54 LKAERDPEKLFQLFKANA--HNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQ 111
             L+ E DP+K  +++ AN   H+   + ++YA E TV RLA  RRF  IE L+E  K+ P+
Sbjct:    40 LRKEHDPDKALKIY-ANVSDHSASPVSSRYAQELTVRRLAKCRRFSDIETLIESHKNDPK 98

Query:   112 GRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQA 171
              + E F   ++  YG+A M  HAM TF  M  YG  R+  S NA L     S++   +  
Sbjct:    99 IKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQ 158

Query:   172 FLMEVPEKFH-IQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISA 230
                E+P++++ I  D  S+ I+IK++C+ G  +KA  +M +MQ  G++   I +TT++S+
Sbjct:   159 LFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSS 218

Query:   231 FYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD 290
              YK    E+ + LWN MV KGC  + A +NVRI     K    +  +L+  M   G++PD
Sbjct:   219 LYKKGELEVADNLWNEMVKKGCELDNAAYNVRIMS-AQKESPERVKELIEEMSSMGLKPD 277

Query:   291 EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCK 350
              ++YN ++  +C  G LD AKKVY  + G    PN   ++T+I +LC    +   Y + K
Sbjct:   278 TISYNYLMTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFK 337

Query:   351 DSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSI 405
              S+  + +P  +T+  L+ GL +N +   A  ++  V+++ P    + L+A+K +
Sbjct:   338 KSVYMHKIPDFNTLKHLVVGLVENKKRDDAKGLIRTVKKKFP---PSFLNAWKKL 389

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

TAIR|locus:2012120 AT1G55890 [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 111/354 (31%), Positives = 191/354 (53%)

Query:    39 EPL-VDKPLEPP--ALVKL-KAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGAR 94
             EP  V   + PP  +L  L   ER+P+++ + FK    +     N   ++ TV RL  A+
Sbjct:    29 EPTAVTAAISPPQKSLTSLVNGERNPKRIVEKFKKACESERFRTNIAVYDRTVRRLVAAK 88

Query:    95 RFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLN 154
             R  Y+E +LE QK      +EGF  RI+ LYGKAGM ++A   F +M    CKR+V S N
Sbjct:    89 RLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRSVLSFN 148

Query:   155 AALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQK 214
             A L     S+    ++    E+P K  I+ DI S+N +IKA CE   L +A  ++ E++ 
Sbjct:   149 ALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEIEN 208

Query:   215 LGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQ 274
              G+KPD++T+ TL+ + Y   + E+G  +W  MV K    ++ T+N R+  L N+ +S +
Sbjct:   209 KGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNARLLGLANEAKSKE 268

Query:   275 ANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH 334
                L G ++  G++PD  ++N +I+G    G +D A+  Y  ++     P++  +  ++ 
Sbjct:   269 LVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGYRPDKATFALLLP 328

Query:   335 YLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQ 388
              +C+ GDF  A  + K++  K ++    T+  L++ L K ++  +A  I+ + +
Sbjct:   329 AMCKAGDFESAIELFKETFSKRYLVGQTTLQQLVDELVKGSKREEAEEIVKIAK 382

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2027387 AT1G11630 [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 103/338 (30%), Positives = 192/338 (56%)

Query:    54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLE-HQKSLPQG 112
             LK+E +P+++ ++ ++ + +     ++  F   V  LA  + F  +  LL+   ++ P  
Sbjct:    49 LKSENNPDRILEICRSTSLSPDYHVDRIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPDP 108

Query:   113 RREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAF 172
             + E F +R ++LYG+A M+  ++ TF ++  Y   RTVKSLNA L     ++D K     
Sbjct:   109 KSESFAVRAIILYGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANRV 168

Query:   173 LMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFY 232
              +E+P+ + I+ D+ ++N +I+  CE G    +Y ++ EM++  +KP   ++  +I  FY
Sbjct:   169 YLEMPKMYGIEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGFY 228

Query:   233 KDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEV 292
             K+ + +    +  +M   G    +AT+N+ IQ L  +++S +A  L+  +    + P+ V
Sbjct:   229 KEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSV 288

Query:   293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS 352
             TY+L+I GFC   +LD A  ++  M+     P+ + Y T+IH LC+ GDF  A I+C++S
Sbjct:   289 TYSLLIHGFCSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRES 348

Query:   353 MKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRR 390
             M+KNWVPS   +  L+ GL   ++  +A  ++A+V+ +
Sbjct:   349 MEKNWVPSFSVMKWLVNGLASRSKVDEAKELIAVVKEK 386

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046288 AT2G18520 [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 111/342 (32%), Positives = 186/342 (54%)

Query:    53 KLKAERDPEKLFQLFKANAHNRIV-IENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQ 111
             KL+  +DP+K   ++K+ ++N    + ++YA E TV RLA ++RF  IE L+E  K+ P+
Sbjct:    39 KLRKVQDPDKALAIYKSVSNNSTSPLSSRYAMELTVQRLAKSQRFSDIEALIESHKNNPK 98

Query:   112 GRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQA 171
              + E F+  ++  YG+A M  HAM  F +M   G  RTV S NA L     S   + +  
Sbjct:    99 IKTETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQ 158

Query:   172 FLMEVPEKFH-IQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISA 230
                E P++++ I  D  S+ ++IK++C+ G  +KA  +M +M+  GV+  +I +TT++ +
Sbjct:   159 LFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTILGS 218

Query:   231 FYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD 290
              YK+   +    LW  MV KGC  +   +NVR+ +   K    +  +LM  M   G++PD
Sbjct:   219 LYKNGLVDEAESLWIEMVNKGCDLDNTVYNVRLMNAA-KESPERVKELMEEMSSVGLKPD 277

Query:   291 EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCK 350
              V+YN ++  +C  G +  AKKVY  +      PN   ++T+I +LC  G ++    + K
Sbjct:   278 TVSYNYLMTAYCVKGMMSEAKKVYEGLE----QPNAATFRTLIFHLCINGLYDQGLTVFK 333

Query:   351 DSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP 392
              S   + +P   T   L EGL KNN+   A  +  +V+++ P
Sbjct:   334 KSAIVHKIPDFKTCKHLTEGLVKNNRMEDARGVARIVKKKFP 375

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2090034 AT3G13160 [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 102/344 (29%), Positives = 176/344 (51%)

Query:    45 PLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLE 104
             P +P  +  +  ERDP+ + + FK         +N   +E TV RLA A++F+++E +LE
Sbjct:    36 PPKPSLITLVNDERDPKFITEKFKKACQAEWFRKNIAVYERTVRRLAAAKKFEWVEEILE 95

Query:   105 HQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESR 164
              Q   P   +EGF+ RI+ LYG+ GM ++A   F +M    CKRT  S NA L     S+
Sbjct:    96 EQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPERNCKRTALSFNALLNACVNSK 155

Query:   165 DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITY 224
                 ++    E+P K  I+ D+ S+N +IK  C  G   +A  ++ E++  G+KPD IT+
Sbjct:   156 KFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITF 215

Query:   225 TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQR 284
               L+   Y   + E G  +W  MV K    ++ ++N R+  L  + +S +   L   ++ 
Sbjct:   216 NILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYNARLLGLAMENKSEEMVSLFDKLKG 275

Query:   285 FGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL 344
               ++PD  T+  +IKGF   G LD A   Y  +      P + ++ +++  +C+ GD   
Sbjct:   276 NELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKNGCRPLKFVFNSLLPAICKAGDLES 335

Query:   345 AYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQ 388
             AY +CK+   K  +     +  +++ L K ++  +A  I+ L +
Sbjct:   336 AYELCKEIFAKRLLVDEAVLQEVVDALVKGSKQDEAEEIVELAK 379

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

TAIR|locus:2090014 AT3G13150 "AT3G13150" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 95/286 (33%), Positives = 162/286 (56%)

Query:    87 VSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGC 146
             + RL  A++F  I+ +L++QK     + E F++RIM+LYG +GM +HA   F +M    C
Sbjct:    94 IRRLREAKKFSTIDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELNC 153

Query:   147 KRTVKSLNAALKVLTESRDL-KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKA 205
             +RTVKS NA L     S+ L +A++ F  E+PEK  I  D+ ++N +IKA C  G +D  
Sbjct:   154 ERTVKSFNALLSAYVNSKKLDEAMKTF-KELPEKLGITPDLVTYNTMIKALCRKGSMDDI 212

Query:   206 YLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH 265
               +  E++K G +PD+I++ TL+  FY+      G+ +W+LM  K   PN+ ++N R++ 
Sbjct:   213 LSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRG 272

Query:   266 LVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN 325
             L   ++   A  L+ +M+  GI PD  TYN +I  +    +L+   K Y+ M  + L P+
Sbjct:   273 LTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKGLTPD 332

Query:   326 RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGL 371
                Y  +I  LC++GD + A  + ++++K   +   +    ++E L
Sbjct:   333 TVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERL 378

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026560 AT1G07740 "AT1G07740" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 95/329 (28%), Positives = 166/329 (50%)

Query:    44 KPLEP-PALVKLKAERDPEKLFQLFKANAHNRIVIENKY-AFEDTVSRLAGARRFDYIEH 101
             KP E  P L  LK   DPE+   LF  + +  +   + Y ++   + +LA +R FD ++ 
Sbjct:    45 KPWEEVPFLTDLKEIEDPEEALSLF--HQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQ 102

Query:   102 LLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLT 161
             +L   +      RE   M ++  YGKAG +  A+D F+ +  + C RT++SLN  + VL 
Sbjct:   103 ILRLVRYRNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLV 162

Query:   162 ESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV 221
             ++ +L+  ++F  +  +   ++ +  SFNI+IK F +    + A  V  EM ++ V+P V
Sbjct:   163 DNGELEKAKSFF-DGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSV 221

Query:   222 ITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGL 281
             +TY +LI    +++       L   M+ K   PN  TF + ++ L  K    +A KLM  
Sbjct:   222 VTYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFD 281

Query:   282 MQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGD 341
             M+  G +P  V Y +++    + G +D AK +   M  RR+ P+  IY  ++++LC E  
Sbjct:   282 MEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECR 341

Query:   342 FNLAYIMCKDSMKKNWVPSVDTISALLEG 370
                AY +  +   K   P+  T   +++G
Sbjct:   342 VPEAYRVLTEMQMKGCKPNAATYRMMIDG 370

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171352 AT5G16420 "AT5G16420" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.4e-33, P = 1.4e-33
 Identities = 97/363 (26%), Positives = 181/363 (49%)

Query:    29 AVSLNKFPNREPLVDKP----LEPPALVKLKAERDPEKL-FQLFKANAHNRIVIENKY-A 82
             A SL ++   +P + KP    L P  LV +  ++    L  Q+F     +     + Y  
Sbjct:    27 AASLQQYCTEKPPI-KPWPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDT 85

Query:    83 FEDTVSRLAGARRFDYIEHLL-EHQKSLPQGR-REGFIMRIMMLYGKAGMIKHAMDTFYD 140
             +   + +L+ AR FD +E L+ + + S P  +  E   + ++  YG AG  + +M  F  
Sbjct:    86 YHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLR 145

Query:   141 MHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMG 200
             +  +G KR+V+SLN  L VL +++    + A      E F I  +IF+ N+++KA C+  
Sbjct:   146 IPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKN 205

Query:   201 ILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFN 260
              ++ AY V+ E+  +G+ P+++TYTT++  +      E    +   M+ +G +P+  T+ 
Sbjct:   206 DIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYT 265

Query:   261 VRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR 320
             V +       R  +A  +M  M++  IEP+EVTY ++I+  C+      A+ ++  ML R
Sbjct:   266 VLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLER 325

Query:   321 RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKA 380
               MP+  +   +I  LC++   + A  + +  +K N +P    +S L+  L K  +  +A
Sbjct:   326 SFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEA 385

Query:   381 NTI 383
               +
Sbjct:   386 RKL 388

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GW57	PP134_ARATH	No assigned EC number	0.6256	0.9706	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	409
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-11
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-09
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-08
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-07
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	9e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	1e-04
pfam01535	31	pfam01535, PPR, PPR repeat	2e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	6e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	7e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.001

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 64.3 bits (158), Expect = 1e-13
 Identities = 18/49 (36%), Positives = 32/49 (65%)

Query: 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK 233
           D+ ++N +I  +C+ G +++A  +  EM+K G+KP+V TY+ LI    K
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 61.7 bits (151), Expect = 1e-12
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 289 PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ 338
           PD VTYN +I G+C+ G ++ A K+++ M  R + PN   Y  +I  LC+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 59.0 bits (144), Expect = 1e-11
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 254 PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCR 303
           P++ T+N  I     K +  +A KL   M++ GI+P+  TY+++I G C+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 53/303 (17%), Positives = 124/303 (40%), Gaps = 27/303 (8%)

Query: 127 KAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDI 186
            AG +  A + +  +H Y  K T +    A+   ++  D     +   ++ +K  ++ D 
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDE 649

Query: 187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNL 246
             F+ ++      G LDKA+ ++ + +K G+K   ++Y++L+ A       +    L+  
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709

Query: 247 MVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGH 306
           +      P ++T N  I  L    +  +A +++  M+R G+ P+ +TY++++    R   
Sbjct: 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769

Query: 307 LDMAKKVYSAMLGRRLMPNRKIYQT-------MIHYLCQEGDFNLAYIMCKDSMKKNW-- 357
            D+   + S      + PN  + +             C  G+  +++   +  ++  W  
Sbjct: 770 ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829

Query: 358 --------------VPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFK 403
                         +P+++ +S +L  L+    P  A     L++       S + S   
Sbjct: 830 WALMVYRETISAGTLPTMEVLSQVLGCLQL---PHDATLRNRLIENLGISADSQKQSNLS 886

Query: 404 SIL 406
           +++
Sbjct: 887 TLV 889

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 21/235 (8%)

Query: 139 YDMHLYGCKRTVKSLNAALKV--LTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAF 196
           ++M +  C  + + ++ AL+V  L +   LKA                D   +  +I   
Sbjct: 440 FNMLMSVCA-SSQDIDGALRVLRLVQEAGLKA----------------DCKLYTTLISTC 482

Query: 197 CEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNL 256
            + G +D  + V  EM   GV+ +V T+  LI    +  +     G + +M  K   P+ 
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542

Query: 257 ATFNVRIQHLVNKRRSWQANKLMGLM--QRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVY 314
             FN  I          +A  ++  M  +   I+PD +T   ++K    +G +D AK+VY
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602

Query: 315 SAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLE 369
             +    +    ++Y   ++   Q+GD++ A  +  D  KK   P     SAL++
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657

Length = 1060

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 49.3 bits (119), Expect = 2e-08
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 285 FGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAM 317
            G++PD VTYN +I G CR+G +D A ++   M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 8/188 (4%)

Query: 182 IQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGN 241
           +  D F+F+I+I+ F  + +L+ A      + + G   D++  T L+  + K  R E   
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380

Query: 242 GLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGF 301
            +++ M  K    NL ++N  I    N  R  +A ++   M   G+ P+ VT+  V+   
Sbjct: 381 NVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436

Query: 302 CRSGHLDMAKKVYSAML-GRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS 360
             SG  +   +++ +M    R+ P    Y  MI  L +EG  + AY M + +  K   P+
Sbjct: 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK---PT 493

Query: 361 VDTISALL 368
           V+  +ALL
Sbjct: 494 VNMWAALL 501

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 48/236 (20%), Positives = 94/236 (39%), Gaps = 44/236 (18%)

Query: 125 YGKAGMIKHAMDTFYDM-------------------------------HL----YGCKRT 149
           Y KAG    A+  ++ M                               H     +G +  
Sbjct: 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221

Query: 150 VKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVM 209
           V  +NA + +  +  D+ + +     +P +     D  S+N +I  + E G   +   + 
Sbjct: 222 VDVVNALITMYVKCGDVVSARLVFDRMPRR-----DCISWNAMISGYFENGECLEGLELF 276

Query: 210 VEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNK 269
             M++L V PD++T T++ISA        +G  +   +V  G   +++  N  IQ  ++ 
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336

Query: 270 RRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN 325
               +A K+   M+      D V++  +I G+ ++G  D A + Y+ M    + P+
Sbjct: 337 GSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 126 GKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDL-KAIQAFLMEVPEKFHIQF 184
           G AG +  A +   D    G K    S ++ +   + +++  KA++  L E  +   ++ 
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE--LYEDIKSIKLRP 717

Query: 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLW 244
            + + N +I A CE   L KA  V+ EM++LG+ P+ ITY+ L+ A  + +  ++G  L 
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777

Query: 245 NLMVCKGCFPNL 256
           +     G  PNL
Sbjct: 778 SQAKEDGIKPNL 789

Length = 1060

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 11/35 (31%), Positives = 23/35 (65%)

Query: 187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV 221
            ++N +I   C+ G +++A  +  EM++ G++PDV
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN 325
           VTYN +I G C++G ++ A +++  M  R + P+
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 291 EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP 324
             TYN ++    ++G  D+A  V   M    L P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRL 322
           VTYN +I G+C++G L+ A +++  M  + +
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 324 PNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK-NWVPSVDTISALLEGLKK 373
           P+   Y T+I   C++G    A  +  + MKK    P+V T S L++GL K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKL-FNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 69/345 (20%), Positives = 122/345 (35%), Gaps = 69/345 (20%)

Query: 40  PLVDKPLEPPALVKLKAERDPEKLFQLFKANAHNR-----IVIENKYAFEDTVSRLAGAR 94
           P        P L +L + + P  L   +  +   R     +   +  +  D+ S+L    
Sbjct: 4   PHFYLNPGKPNLFQLASHKAPNVLP-YWNFHGRKRSRGLSVAASSSSSTHDSNSQLRALC 62

Query: 95  RFDYIEHLLEHQKSLPQGR----REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTV 150
               +E  L+  +S+ + R     + ++    +   K            +     C R +
Sbjct: 63  SHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRA---------VEEGSRVCSRAL 113

Query: 151 KSL--------NAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGIL 202
            S         NA L +     +L        ++PE+     D+FS+N+++  + + G  
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER-----DLFSWNVLVGGYAKAGYF 168

Query: 203 DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVR 262
           D+A  +   M   GV+PDV T+  +                  L  C G  P+LA     
Sbjct: 169 DEALCLYHRMLWAGVRPDVYTFPCV------------------LRTCGG-IPDLARGREV 209

Query: 263 IQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-R 321
             H+V                RFG E D    N +I  + + G +  A+ V+  M  R  
Sbjct: 210 HAHVV----------------RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC 253

Query: 322 LMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISA 366
           +  N  I     +  C EG   L + M + S+  + +     ISA
Sbjct: 254 ISWNAMISGYFENGECLEG-LELFFTMRELSVDPDLMTITSVISA 297

Length = 857

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKP 219
           + ++N ++ A  + G  D A  V+ EM+  G+KP
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 36.6 bits (86), Expect = 7e-04
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQ 213
           D+ ++N +I   C  G +D+A  ++ EM+
Sbjct: 6   DVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 35.8 bits (84), Expect = 0.001
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 216 GVKPDVITYTTLISAFYKDNR 236
           G+KPDV+TY TLI    +  R
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGR 22

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	409
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.93
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.85
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.84
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.81
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.79
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.79
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.79
PRK14574	822	hmsH outer membrane protein; Provisional	99.79
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.78
PRK14574	822	hmsH outer membrane protein; Provisional	99.75
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.75
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.73
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.72
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.7
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.69
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.69
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.68
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.68
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.67
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.67
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.65
KOG1126	638	consensus DNA-binding cell division cycle control	99.65
KOG2076	895	consensus RNA polymerase III transcription factor	99.64
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.6
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.6
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.58
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.56
KOG1126	638	consensus DNA-binding cell division cycle control	99.55
KOG2003	840	consensus TPR repeat-containing protein [General f	99.54
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.52
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.5
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.48
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.46
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.43
PF13041	50	PPR_2: PPR repeat family	99.43
KOG2003	840	consensus TPR repeat-containing protein [General f	99.43
KOG2076	895	consensus RNA polymerase III transcription factor	99.42
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.42
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.42
PF13041	50	PPR_2: PPR repeat family	99.41
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.41
KOG1129	478	consensus TPR repeat-containing protein [General f	99.4
PRK12370	553	invasion protein regulator; Provisional	99.4
PRK12370	553	invasion protein regulator; Provisional	99.39
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.37
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.36
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.34
KOG1129	478	consensus TPR repeat-containing protein [General f	99.33
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.31
PRK11189	296	lipoprotein NlpI; Provisional	99.31
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.3
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.22
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.2
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.19
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.19
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.19
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.19
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.19
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.18
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.17
PRK11189	296	lipoprotein NlpI; Provisional	99.15
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.13
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.13
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.11
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.08
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.08
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.07
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.07
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.06
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.04
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.98
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.94
KOG1125	579	consensus TPR repeat-containing protein [General f	98.94
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.94
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.93
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.92
PRK04841	903	transcriptional regulator MalT; Provisional	98.88
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.84
PF12854	34	PPR_1: PPR repeat	98.84
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.83
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.81
PF12854	34	PPR_1: PPR repeat	98.8
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.79
PLN02789	320	farnesyltranstransferase	98.79
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.77
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.75
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.75
PRK04841	903	transcriptional regulator MalT; Provisional	98.75
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.73
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.73
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.72
PLN02789	320	farnesyltranstransferase	98.72
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.69
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.68
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.68
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.67
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.67
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.63
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.61
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.6
KOG1125	579	consensus TPR repeat-containing protein [General f	98.59
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.59
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.58
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.56
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.56
PRK15359	144	type III secretion system chaperone protein SscB;	98.55
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.53
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.53
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.5
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.47
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.46
PRK15359	144	type III secretion system chaperone protein SscB;	98.45
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.45
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.44
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.43
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.42
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.4
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.4
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.31
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.31
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.29
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.27
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.27
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.26
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.26
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.25
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.25
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.24
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.22
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	98.22
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.18
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.18
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.17
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.15
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.14
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.12
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.11
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.06
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.05
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.02
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.02
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.97
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.95
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.92
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.91
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.9
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.89
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.87
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.83
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.78
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.78
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.78
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.78
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.75
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.74
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.74
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.7
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.67
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.67
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.66
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.63
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.61
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.6
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.6
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.57
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.52
PRK10803	263	tol-pal system protein YbgF; Provisional	97.51
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.5
KOG0553	304	consensus TPR repeat-containing protein [General f	97.49
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.47
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.47
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.46
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.44
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.42
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.4
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.39
PF12688	120	TPR_5: Tetratrico peptide repeat	97.37
PF12688	120	TPR_5: Tetratrico peptide repeat	97.33
KOG0553	304	consensus TPR repeat-containing protein [General f	97.33
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.23
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.2
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.17
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.15
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.14
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.12
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.11
PF13371	73	TPR_9: Tetratricopeptide repeat	97.09
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.08
PRK10803	263	tol-pal system protein YbgF; Provisional	97.06
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.0
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.91
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.9
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.86
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.85
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.82
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.72
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.71
PRK15331	165	chaperone protein SicA; Provisional	96.68
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.67
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.64
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.64
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.6
PRK15331	165	chaperone protein SicA; Provisional	96.6
PF13371	73	TPR_9: Tetratricopeptide repeat	96.58
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.54
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.51
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.47
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.46
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.44
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.36
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.35
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.35
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.32
KOG3941	406	consensus Intermediate in Toll signal transduction	96.25
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.21
KOG3941	406	consensus Intermediate in Toll signal transduction	96.19
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.13
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.1
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.0
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.99
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.96
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.95
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.93
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.9
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.9
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.74
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.71
PF13512	142	TPR_18: Tetratricopeptide repeat	95.6
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.58
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.58
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.45
KOG4555	175	consensus TPR repeat-containing protein [Function	95.43
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.35
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.34
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.32
PF13512	142	TPR_18: Tetratricopeptide repeat	95.29
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.25
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.21
KOG4555	175	consensus TPR repeat-containing protein [Function	95.17
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.12
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.94
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.8
PF13428	44	TPR_14: Tetratricopeptide repeat	94.71
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.68
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.63
PF13428	44	TPR_14: Tetratricopeptide repeat	94.61
PF13929	292	mRNA_stabil: mRNA stabilisation	94.56
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.54
KOG1585	308	consensus Protein required for fusion of vesicles	94.4
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.39
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.26
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.23
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	94.15
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.15
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	94.12
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.04
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.84
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.82
KOG1585	308	consensus Protein required for fusion of vesicles	93.81
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	93.69
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	93.69
PRK09687	280	putative lyase; Provisional	93.65
KOG4570	418	consensus Uncharacterized conserved protein [Funct	93.57
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.53
KOG4570	418	consensus Uncharacterized conserved protein [Funct	93.52
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	93.45
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.38
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.35
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.33
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.2
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.13
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	93.08
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.89
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	92.54
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.36
PF13929	292	mRNA_stabil: mRNA stabilisation	92.35
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.28
COG0457	291	NrfG FOG: TPR repeat [General function prediction	92.06
PRK11906	458	transcriptional regulator; Provisional	91.97
COG4105	254	ComL DNA uptake lipoprotein [General function pred	91.87
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.84
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.81
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.79
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.6
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.1
PRK11906	458	transcriptional regulator; Provisional	91.05
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.79
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	90.52
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	90.21
PF13762	145	MNE1: Mitochondrial splicing apparatus component	89.96
PF13431	34	TPR_17: Tetratricopeptide repeat	89.53
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.39
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	89.38
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	89.17
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	89.07
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	89.0
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	88.47
KOG1550	552	consensus Extracellular protein SEL-1 and related	88.47
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.36
COG1747	711	Uncharacterized N-terminal domain of the transcrip	87.99
KOG4234	271	consensus TPR repeat-containing protein [General f	87.91
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	87.89
PF13431	34	TPR_17: Tetratricopeptide repeat	87.88
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.85
KOG4648	536	consensus Uncharacterized conserved protein, conta	87.22
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	87.15
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	86.94
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	86.59
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	86.16
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	86.14
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.12
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	85.63
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	83.99
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	83.78
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	83.11
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	82.96
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	82.9
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	82.89
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.86
PRK09687	280	putative lyase; Provisional	80.92
PHA02875	413	ankyrin repeat protein; Provisional	80.88
PF13762	145	MNE1: Mitochondrial splicing apparatus component	80.55

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=5.5e-59  Score=451.86  Aligned_cols=364  Identities=13%  Similarity=0.142  Sum_probs=351.3

Q ss_pred             CCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHH
Q 015329           42 VDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRI  121 (409)
Q Consensus        42 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  121 (409)
                      |+...+..++..+.+.++.+.|.++|+.|.+.+ +.||..+|+.+|.+|++.|++++|.++|++|...+..++..+|+.+
T Consensus       435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL  513 (1060)
T PLN03218        435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL  513 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            566677888899999999999999999999988 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc-CCCCcCHHHHHHHHHHHHhcC
Q 015329          122 MMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK-FHIQFDIFSFNIVIKAFCEMG  200 (409)
Q Consensus       122 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g  200 (409)
                      |.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|... .|+.||..+|++++.+|++.|
T Consensus       514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G  593 (1060)
T PLN03218        514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG  593 (1060)
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999999999999999999888653 688999999999999999999


Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 015329          201 ILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMG  280 (409)
Q Consensus       201 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  280 (409)
                      ++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++++
T Consensus       594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~  673 (1060)
T PLN03218        594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ  673 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 015329          281 LMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS  360 (409)
Q Consensus       281 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~  360 (409)
                      +|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||
T Consensus       674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd  753 (1060)
T PLN03218        674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN  753 (1060)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhh
Q 015329          361 VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSIL  406 (409)
Q Consensus       361 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  406 (409)
                      ..||+.++.+|.+.|++++|.+++++|.+.+..++..+++.++.+|
T Consensus       754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc  799 (1060)
T PLN03218        754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC  799 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998764

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1e-57  Score=443.03  Aligned_cols=365  Identities=16%  Similarity=0.189  Sum_probs=347.0

Q ss_pred             CCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCC-------------------------------CccchHHHHHHHHhc
Q 015329           44 KPLEPPALVKLKAERDPEKLFQLFKANAHNRIVI-------------------------------ENKYAFEDTVSRLAG   92 (409)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------~~~~~~~~li~~~~~   92 (409)
                      .+.+...+..+.+.|+.+.|+++|++|.+.+.+.                               ||..+|+.++.+|++
T Consensus       370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k  449 (1060)
T PLN03218        370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCAS  449 (1060)
T ss_pred             chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            4456667777888899999999999998777332                               678889999999999


Q ss_pred             CCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHH
Q 015329           93 ARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAF  172 (409)
Q Consensus        93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  172 (409)
                      .|++++|.++|+.|.+.+..++..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|..+
T Consensus       450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l  529 (1060)
T PLN03218        450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA  529 (1060)
T ss_pred             CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Q 015329          173 LMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQK--LGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK  250 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  250 (409)
                      |++| ...|+.||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|+++|.+|++.|++++|.++|+.|.+.
T Consensus       530 f~~M-~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~  608 (1060)
T PLN03218        530 YGIM-RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY  608 (1060)
T ss_pred             HHHH-HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            9877 4569999999999999999999999999999999986  678999999999999999999999999999999999


Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 015329          251 GCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQ  330 (409)
Q Consensus       251 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  330 (409)
                      |+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+
T Consensus       609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn  688 (1060)
T PLN03218        609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS  688 (1060)
T ss_pred             CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhhccC
Q 015329          331 TMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSKS  409 (409)
Q Consensus       331 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~k~  409 (409)
                      .+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.+..++..+|..++.+|++.
T Consensus       689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~  767 (1060)
T PLN03218        689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK  767 (1060)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999863

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=5.2e-54  Score=413.98  Aligned_cols=351  Identities=16%  Similarity=0.170  Sum_probs=259.6

Q ss_pred             CChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHH
Q 015329           46 LEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLY  125 (409)
Q Consensus        46 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  125 (409)
                      .+...+..+.+.|++++|+++|++|...+++.||..+|+.++.+|++.++++.+.+++..|.+.+..++..+++.++..|
T Consensus        89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y  168 (697)
T PLN03081         89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH  168 (697)
T ss_pred             eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            56777888999999999999999998876678899999999999999999999999999988888888888877788877


Q ss_pred             HhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc--------------------------
Q 015329          126 GKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK--------------------------  179 (409)
Q Consensus       126 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------------------  179 (409)
                      ++.|+++.|.++|++|.    .||..+||.++.+|++.|++++|..+|++|.+.                          
T Consensus       169 ~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~  244 (697)
T PLN03081        169 VKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ  244 (697)
T ss_pred             hcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence            77777777777777775    467777777777777777777777777666322                          


Q ss_pred             --------CCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Q 015329          180 --------FHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKG  251 (409)
Q Consensus       180 --------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  251 (409)
                              .|+.||..+|+.|+.+|++.|++++|.++|++|..    +|.++||.+|.+|++.|++++|+++|++|.+.|
T Consensus       245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g  320 (697)
T PLN03081        245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG  320 (697)
T ss_pred             HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence                    23334444556666677777777777777776643    466777777777777777777777777777777


Q ss_pred             CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 015329          252 CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQT  331 (409)
Q Consensus       252 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  331 (409)
                      +.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+    ||..+||.
T Consensus       321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~  396 (697)
T PLN03081        321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA  396 (697)
T ss_pred             CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777776653    46667777


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh-cCCCCCchhHHHHHHhhcc
Q 015329          332 MIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQR-RVPHFSSNQLSAFKSILSK  408 (409)
Q Consensus       332 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~k  408 (409)
                      ||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .+..++..+|..++++|++
T Consensus       397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r  474 (697)
T PLN03081        397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR  474 (697)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence            7777777777777777777777777777777777777777777777777777777754 3555556666666666665

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=4.6e-52  Score=400.48  Aligned_cols=350  Identities=13%  Similarity=0.143  Sum_probs=313.2

Q ss_pred             CCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHH
Q 015329           42 VDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRI  121 (409)
Q Consensus        42 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  121 (409)
                      ++...+..++..+.+.++.+.+.+++..|.+.| +.||..+|+.++..|++.|++++|.++|++|..    ++..+|+.+
T Consensus       121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~l  195 (697)
T PLN03081        121 LPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTI  195 (697)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHH
Confidence            556678888888999999999999999998888 889999999999999999999999999999863    577889999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhcCCCCC-----------------------------------HHhHHHHHHHHHccCCH
Q 015329          122 MMLYGKAGMIKHAMDTFYDMHLYGCKRT-----------------------------------VKSLNAALKVLTESRDL  166 (409)
Q Consensus       122 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----------------------------------~~~~~~ll~~~~~~~~~  166 (409)
                      +.+|++.|++++|+++|++|.+.|+.|+                                   ..+|+.|+.+|++.|++
T Consensus       196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~  275 (697)
T PLN03081        196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI  275 (697)
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence            9999999999999999999977766555                                   44557788899999999


Q ss_pred             HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHH
Q 015329          167 KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNL  246 (409)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  246 (409)
                      ++|..+|++|..     +|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..
T Consensus       276 ~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~  350 (697)
T PLN03081        276 EDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG  350 (697)
T ss_pred             HHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            999999988854     489999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 015329          247 MVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR  326 (409)
Q Consensus       247 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  326 (409)
                      |.+.|+.||..+|++++.+|++.|++++|.++|++|.    .||..+||.||.+|++.|+.++|.++|++|.+.|+.||.
T Consensus       351 m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~  426 (697)
T PLN03081        351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH  426 (697)
T ss_pred             HHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence            9999999999999999999999999999999999986    578899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHh
Q 015329          327 KIYQTMIHYLCQEGDFNLAYIMCKDSMK-KNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSI  405 (409)
Q Consensus       327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  405 (409)
                      .||+.++.+|++.|.+++|.++|++|.+ .|+.|+..+|+.++.+|.+.|++++|.++++++   ...++..++..|+.+
T Consensus       427 ~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a  503 (697)
T PLN03081        427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA  503 (697)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH
Confidence            9999999999999999999999999976 588999999999999999999999999888765   334556677888877


Q ss_pred             hcc
Q 015329          406 LSK  408 (409)
Q Consensus       406 ~~k  408 (409)
                      |.+
T Consensus       504 ~~~  506 (697)
T PLN03081        504 CRI  506 (697)
T ss_pred             HHH
Confidence            754

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.2e-50  Score=399.50  Aligned_cols=353  Identities=19%  Similarity=0.162  Sum_probs=209.4

Q ss_pred             CCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchH-----------------------------------HHH
Q 015329           42 VDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAF-----------------------------------EDT   86 (409)
Q Consensus        42 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------------------------~~l   86 (409)
                      ++.+.++..+..+.+.|++++|+.+|+.|.+.+ +.|+..+|                                   +.+
T Consensus        49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l  127 (857)
T PLN03077         49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELR-VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM  127 (857)
T ss_pred             cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence            344556677788888888888888888887765 55555554                                   444


Q ss_pred             HHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCH
Q 015329           87 VSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDL  166 (409)
Q Consensus        87 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  166 (409)
                      +..|++.|+++.|.++|++|..    ++..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++++|...+++
T Consensus       128 i~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~  203 (857)
T PLN03077        128 LSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL  203 (857)
T ss_pred             HHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence            5555666666666666666642    356677777777777777777777777777777777766666555555555444


Q ss_pred             HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHH
Q 015329          167 KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNL  246 (409)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  246 (409)
                      +.+.+++..+ .+.|+.||..+||.++.+|++.|+++.|.++|++|.    .+|.++||++|.+|++.|++++|+++|++
T Consensus       204 ~~~~~~~~~~-~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~  278 (857)
T PLN03077        204 ARGREVHAHV-VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFT  278 (857)
T ss_pred             hhHHHHHHHH-HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence            4444444333 233445555555555555555555555555555553    24555555555555555555555555555


Q ss_pred             HHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 015329          247 MVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR  326 (409)
Q Consensus       247 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  326 (409)
                      |.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.    .||.
T Consensus       279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~  354 (857)
T PLN03077        279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA  354 (857)
T ss_pred             HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe
Confidence            555555555555555555555555555555555555555555555555555555555555555555555554    2355


Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhh
Q 015329          327 KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSIL  406 (409)
Q Consensus       327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  406 (409)
                      .+|+.+|.+|++.|++++|.++|++|.+.|+.||..||..++.+|++.|+++.|.++++.+.+.+..++..+++.|+++|
T Consensus       355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y  434 (857)
T PLN03077        355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY  434 (857)
T ss_pred             eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cc
Q 015329          407 SK  408 (409)
Q Consensus       407 ~k  408 (409)
                      +|
T Consensus       435 ~k  436 (857)
T PLN03077        435 SK  436 (857)
T ss_pred             HH
Confidence            54

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=2.6e-50  Score=397.17  Aligned_cols=351  Identities=13%  Similarity=0.111  Sum_probs=195.5

Q ss_pred             CCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHH
Q 015329           42 VDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRI  121 (409)
Q Consensus        42 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  121 (409)
                      ++...|+..+..+.+.|++++|+++|++|...+ +.||..||+.++.+|++.|+++.+.+++..+.+.+..++..+|+.|
T Consensus       251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~L  329 (857)
T PLN03077        251 RDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL  329 (857)
T ss_pred             CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHH
Confidence            344455566666666666666666666666555 5666666666666666666666666666666666655566666666


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCC
Q 015329          122 MMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGI  201 (409)
Q Consensus       122 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  201 (409)
                      +.+|++.|++++|.++|++|.    .||..+|+.++.+|++.|++++|..+|++| ...|+.||..+|+.++.+|++.|+
T Consensus       330 i~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M-~~~g~~Pd~~t~~~ll~a~~~~g~  404 (857)
T PLN03077        330 IQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALM-EQDNVSPDEITIASVLSACACLGD  404 (857)
T ss_pred             HHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCCCceeHHHHHHHHhccch
Confidence            666666666666666666554    355555666666666666666666666544 333555555555555555555555


Q ss_pred             hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 015329          202 LDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGL  281 (409)
Q Consensus       202 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  281 (409)
                      ++.|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|+.|.+    +|..+|+.+|.+|++.|+.++|..+|++
T Consensus       405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~  480 (857)
T PLN03077        405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQ  480 (857)
T ss_pred             HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence            555555555555555555555555555555555555555555555432    2334444444444444444444444444


Q ss_pred             HHHcCCCcCH-----------------------------------------------------------------HHHHH
Q 015329          282 MQRFGIEPDE-----------------------------------------------------------------VTYNL  296 (409)
Q Consensus       282 ~~~~~~~p~~-----------------------------------------------------------------~~~~~  296 (409)
                      |.+ ++.||.                                                                 .+||.
T Consensus       481 m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~  559 (857)
T PLN03077        481 MLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNI  559 (857)
T ss_pred             HHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHH
Confidence            432 234444                                                                 44455


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCC
Q 015329          297 VIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSM-KKNWVPSVDTISALLEGLKKNN  375 (409)
Q Consensus       297 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~l~~~~~~~g  375 (409)
                      +|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|+.++.+|.+.|
T Consensus       560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G  639 (857)
T PLN03077        560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG  639 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence            555555555555555555555555555555555555555555555555555555555 3455555555555555555555


Q ss_pred             ChHHHHHHHHHHHhcCCCCCchhHHHHHHhh
Q 015329          376 QPCKANTIMALVQRRVPHFSSNQLSAFKSIL  406 (409)
Q Consensus       376 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  406 (409)
                      ++++|.+++++|.   ..++..++.+|+.+|
T Consensus       640 ~~~eA~~~~~~m~---~~pd~~~~~aLl~ac  667 (857)
T PLN03077        640 KLTEAYNFINKMP---ITPDPAVWGALLNAC  667 (857)
T ss_pred             CHHHHHHHHHHCC---CCCCHHHHHHHHHHH
Confidence            5555555555552   233344555555554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.93  E-value=6.1e-22  Score=199.28  Aligned_cols=338  Identities=15%  Similarity=0.043  Sum_probs=195.3

Q ss_pred             hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329           54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH  133 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  133 (409)
                      +...+++++|.+.|+.+.+..  +.+...+..+...+...|++++|.+.++.+....+. +...+..+...+.+.|++++
T Consensus       475 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~  551 (899)
T TIGR02917       475 YLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEE  551 (899)
T ss_pred             HHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHH
Confidence            334455555555555544433  222333444444445555555555555554433222 33444445555555555555


Q ss_pred             HHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015329          134 AMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQ  213 (409)
Q Consensus       134 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  213 (409)
                      |..+|+++...+ +.+...+..+...+...|+++.+..+++.+...  .+.+...|..+...|...|++++|...|+++.
T Consensus       552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  628 (899)
T TIGR02917       552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL  628 (899)
T ss_pred             HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            555555554433 334444555555555566666666555544332  23345556666666666666666666666666


Q ss_pred             hCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHH
Q 015329          214 KLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVT  293 (409)
Q Consensus       214 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~  293 (409)
                      +.... +...+..+...+.+.|++++|..+++.+.+.. +.+..++..+...+...|++++|..+++.+.+.+. .+...
T Consensus       629 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~  705 (899)
T TIGR02917       629 ALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALG  705 (899)
T ss_pred             HhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHH
Confidence            54322 45556666666666666666666666666542 33456666666666666666666666666665542 35556


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015329          294 YNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKK  373 (409)
Q Consensus       294 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~  373 (409)
                      +..+...+...|++++|.+.|+.+...+  |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|..
T Consensus       706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~  782 (899)
T TIGR02917       706 FELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLA  782 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            6666667777777777777777776653  344556666777777777777777777766653 5566677777777777


Q ss_pred             CCChHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 015329          374 NNQPCKANTIMALVQRRVPHFSSNQLSAFKS  404 (409)
Q Consensus       374 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  404 (409)
                      .|++++|.+.++++.+..|+. ...+..+..
T Consensus       783 ~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~  812 (899)
T TIGR02917       783 QKDYDKAIKHYRTVVKKAPDN-AVVLNNLAW  812 (899)
T ss_pred             CcCHHHHHHHHHHHHHhCCCC-HHHHHHHHH
Confidence            777777777777777766543 333343333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.93  E-value=6.8e-22  Score=198.92  Aligned_cols=337  Identities=10%  Similarity=0.014  Sum_probs=183.7

Q ss_pred             cCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 015329           57 ERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMD  136 (409)
Q Consensus        57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  136 (409)
                      .|+.++|...|+.+...+  +.+...+..++..+.+.|++++|..+++.+....+ .+...+..+..+|...|++++|.+
T Consensus       546 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~  622 (899)
T TIGR02917       546 TGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVS  622 (899)
T ss_pred             cCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence            334444444444443332  12223333444444444444444444444433221 133444444555555555555555


Q ss_pred             HHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 015329          137 TFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLG  216 (409)
Q Consensus       137 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g  216 (409)
                      .|+++.+.. +.+...+..+...+...|+++.|..+++++...  .+.+..++..+...+...|++++|.++++.+.+.+
T Consensus       623 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  699 (899)
T TIGR02917       623 SFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH  699 (899)
T ss_pred             HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            555544432 223344444555555555555555555443322  11234445555555555555555555555555443


Q ss_pred             CCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHH
Q 015329          217 VKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNL  296 (409)
Q Consensus       217 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~  296 (409)
                      . .+...+..+...+...|++++|...|+.+...+  |+..++..+..++.+.|++++|...++.+.+... .+...+..
T Consensus       700 ~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~  775 (899)
T TIGR02917       700 P-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTA  775 (899)
T ss_pred             c-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence            2 244455555555566666666666666655542  3335555566666666666666666666655432 25566666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329          297 VIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ  376 (409)
Q Consensus       297 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~  376 (409)
                      +...|...|++++|.++|+++.+... .+..+++.+...+...|+ .+|+.+++++.+.. +-+..++..+...+...|+
T Consensus       776 la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~  852 (899)
T TIGR02917       776 LAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGE  852 (899)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence            66667777777777777777666532 356666667777777777 66777777666543 3445566667777788888


Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHhhc
Q 015329          377 PCKANTIMALVQRRVPHFSSNQLSAFKSILS  407 (409)
Q Consensus       377 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  407 (409)
                      +++|.++++++.+.+|. ++..+..+..+|.
T Consensus       853 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~  882 (899)
T TIGR02917       853 ADRALPLLRKAVNIAPE-AAAIRYHLALALL  882 (899)
T ss_pred             HHHHHHHHHHHHhhCCC-ChHHHHHHHHHHH
Confidence            88888888888887765 4555555655554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=2.5e-22  Score=182.28  Aligned_cols=300  Identities=9%  Similarity=0.047  Sum_probs=188.3

Q ss_pred             HHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC---HHhHHHHHHHHHccC
Q 015329           88 SRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRT---VKSLNAALKVLTESR  164 (409)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~  164 (409)
                      ..+...|++++|...|+++....+. +..++..+...+...|++++|.++++.+...+..++   ..++..+...|...|
T Consensus        43 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         43 LNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            3345556666666666666655332 344555666666677777777777766655321111   234566666677777


Q ss_pred             CHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChhhH
Q 015329          165 DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV----ITYTTLISAFYKDNRPEIG  240 (409)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a  240 (409)
                      +++.|..+|+++.+.  .+.+..+++.++..+.+.|++++|.+.++.+.+.+..++.    ..+..+...+.+.|++++|
T Consensus       122 ~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  199 (389)
T PRK11788        122 LLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA  199 (389)
T ss_pred             CHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            777777777665433  1234556677777777777777777777777665433221    2344555666677777777


Q ss_pred             HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          241 NGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       241 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      ...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.+..+|.+.|++++|...++++.+.
T Consensus       200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  278 (389)
T PRK11788        200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE  278 (389)
T ss_pred             HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            77777776643 33455666666777777777777777777766533222455667777777777777777777777665


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---CCChHHHHHHHHHHHhcCCCCC
Q 015329          321 RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKK---NNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       321 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                        .|+...+..++..+.+.|++++|..+++++.+.  .|+..++..++..+..   .|+.+++..+++++.+....++
T Consensus       279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~  352 (389)
T PRK11788        279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK  352 (389)
T ss_pred             --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence              355555667777777777777777777776665  4677677766666554   4467777777777765544433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=9.6e-23  Score=184.99  Aligned_cols=301  Identities=11%  Similarity=0.035  Sum_probs=250.7

Q ss_pred             hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC---hhHHHHHHHHHHhcCC
Q 015329           54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR---EGFIMRIMMLYGKAGM  130 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~  130 (409)
                      ....++++.|++.|+.+.+.+  +.+..++..+...+...|++++|..+++.+...+....   ...+..+...|.+.|+
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~  122 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL  122 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence            446789999999999999886  34556788899999999999999999999987643322   2456778999999999


Q ss_pred             hHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC---HHHHHHHHHHHHhcCChhHHHH
Q 015329          131 IKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD---IFSFNIVIKAFCEMGILDKAYL  207 (409)
Q Consensus       131 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~  207 (409)
                      +++|.++|+++.+.. +.+..+++.++..+.+.|++++|...++.+.......+.   ...+..+...+.+.|++++|..
T Consensus       123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  201 (389)
T PRK11788        123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA  201 (389)
T ss_pred             HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            999999999998764 456788999999999999999999999877654322222   2245677788899999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 015329          208 VMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGI  287 (409)
Q Consensus       208 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  287 (409)
                      .|+++.+.... +...+..+...+.+.|++++|.++++++.+.+......+++.+..+|.+.|++++|...++++.+.  
T Consensus       202 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--  278 (389)
T PRK11788        202 LLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--  278 (389)
T ss_pred             HHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence            99999986432 566788888999999999999999999987643333567889999999999999999999999887  


Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHhHHHHHHHHHHhCCCCCCHH
Q 015329          288 EPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ---EGDFNLAYIMCKDSMKKNWVPSVD  362 (409)
Q Consensus       288 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~  362 (409)
                      .|+...+..+...+.+.|++++|..+++++.+.  .|+...++.++..+..   .|+.+++..++++|.++++.|++.
T Consensus       279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            456666788999999999999999999998876  6899999988888775   568999999999999988777765

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.91  E-value=2.8e-20  Score=177.20  Aligned_cols=348  Identities=8%  Similarity=-0.035  Sum_probs=280.7

Q ss_pred             ChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHH
Q 015329           47 EPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYG  126 (409)
Q Consensus        47 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  126 (409)
                      ...++..+.+.|+++.|+.+++......  +-+...+..++.++...|++++|...++.+....+. +...+..+...+.
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~  121 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL  121 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence            3455667788999999999999998886  334455666677778899999999999999987554 5667778899999


Q ss_pred             hcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 015329          127 KAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAY  206 (409)
Q Consensus       127 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~  206 (409)
                      ..|++++|.+.|++..+.. +.+...+..+...+...|+.++|...++.+.....  .+...+..+ ..+...|++++|.
T Consensus       122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P--~~~~a~~~~-~~l~~~g~~~eA~  197 (656)
T PRK15174        122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP--PRGDMIATC-LSFLNKSRLPEDH  197 (656)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC--CCHHHHHHH-HHHHHcCCHHHHH
Confidence            9999999999999998764 44567888999999999999999999876644422  223333333 3478899999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhH----HHHHHHHH
Q 015329          207 LVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQ----ANKLMGLM  282 (409)
Q Consensus       207 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~  282 (409)
                      ..++.+.+....++...+..+..++.+.|++++|+..++...+.. +.+...+..+...+...|++++    |...|++.
T Consensus       198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A  276 (656)
T PRK15174        198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA  276 (656)
T ss_pred             HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence            999998876544455556666788899999999999999999874 5567788889999999999986    89999999


Q ss_pred             HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH-
Q 015329          283 QRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSV-  361 (409)
Q Consensus       283 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-  361 (409)
                      .+.... +...+..+...+.+.|++++|...+++..+.... +...+..+..++...|++++|...++++.+.+  |+. 
T Consensus       277 l~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~  352 (656)
T PRK15174        277 LQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTS  352 (656)
T ss_pred             HhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccch
Confidence            887433 6778899999999999999999999999987433 56677788899999999999999999988763  544 


Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhh
Q 015329          362 DTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSIL  406 (409)
Q Consensus       362 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  406 (409)
                      ..+..+..++...|+.++|.+.+++..+..|......+..-+..|
T Consensus       353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~  397 (656)
T PRK15174        353 KWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLAL  397 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHH
Confidence            334445678899999999999999999998887666665555444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.86  E-value=3.6e-17  Score=156.36  Aligned_cols=292  Identities=10%  Similarity=0.025  Sum_probs=154.0

Q ss_pred             hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329           54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH  133 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  133 (409)
                      +.+.++++.|+..|+......   |+...|..+..++.+.|++++|++.++......+. ....+..+..+|...|++++
T Consensus       137 ~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~e  212 (615)
T TIGR00990       137 AYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYAD  212 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHH
Confidence            456799999999999998765   67788889999999999999999999998877543 45666678888888888888


Q ss_pred             HHHHHHHhhhcC----------------------------CCC-CHHhHHHHHH--------------------------
Q 015329          134 AMDTFYDMHLYG----------------------------CKR-TVKSLNAALK--------------------------  158 (409)
Q Consensus       134 a~~~~~~m~~~~----------------------------~~~-~~~~~~~ll~--------------------------  158 (409)
                      |+.-|......+                            ..| +...+..+..                          
T Consensus       213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (615)
T TIGR00990       213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN  292 (615)
T ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence            876553322110                            000 0000000000                          


Q ss_pred             ----HH------HccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 015329          159 ----VL------TESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTL  227 (409)
Q Consensus       159 ----~~------~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  227 (409)
                          ..      ...+.+++|...|+.........| +...|+.+...+...|++++|+..|++..+.... ....|..+
T Consensus       293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~l  371 (615)
T TIGR00990       293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKR  371 (615)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence                00      011234455555544433221222 2334444555555555555555555555543211 23344444


Q ss_pred             HHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 015329          228 ISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHL  307 (409)
Q Consensus       228 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  307 (409)
                      ...+...|++++|...|+...+.. +.+...|..+...+...|++++|...|++..+.... +...+..+...+.+.|++
T Consensus       372 a~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~  449 (615)
T TIGR00990       372 ASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSI  449 (615)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCH
Confidence            455555555555555555554432 223444444455555555555555555554443211 233344444444444555


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 015329          308 DMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSM  353 (409)
Q Consensus       308 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  353 (409)
                      ++|...|+...+.. .-+...++.+...+...|++++|.+.|++.+
T Consensus       450 ~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al  494 (615)
T TIGR00990       450 ASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAI  494 (615)
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            55555544444331 1123344444444444444444444444433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.85  E-value=7.5e-17  Score=153.89  Aligned_cols=333  Identities=12%  Similarity=0.016  Sum_probs=263.3

Q ss_pred             hhhcCChHHHHHHHHHhhcCCC-CCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChH
Q 015329           54 LKAERDPEKLFQLFKANAHNRI-VIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIK  132 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  132 (409)
                      +.++.+++..--+|....+... ...+..-...++..+.+.|++++|..+++......+. +...+..++.+....|+++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~   93 (656)
T PRK15174         15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD   93 (656)
T ss_pred             hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence            3455666665555555433321 1123344666788899999999999999999877665 4555555777788899999


Q ss_pred             HHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015329          133 HAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEM  212 (409)
Q Consensus       133 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m  212 (409)
                      .|.+.|+++.+.. +.+...+..+...+...|+++.|...+++.....  +.+...+..+...+...|++++|...++.+
T Consensus        94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~  170 (656)
T PRK15174         94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQ  170 (656)
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            9999999998875 4566788889999999999999999998775541  234667888999999999999999999998


Q ss_pred             HhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHH
Q 015329          213 QKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEV  292 (409)
Q Consensus       213 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~  292 (409)
                      ...... +...+..+ ..+...|++++|...++.+.+....++...+..+..++.+.|++++|...++++.+.... +..
T Consensus       171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~  247 (656)
T PRK15174        171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAA  247 (656)
T ss_pred             HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHH
Confidence            776544 23333333 347889999999999999887643344555566678889999999999999999987533 677


Q ss_pred             HHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329          293 TYNLVIKGFCRSGHLDM----AKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALL  368 (409)
Q Consensus       293 ~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~  368 (409)
                      .+..+...+...|++++    |...|++..+.... +...+..+...+...|++++|...+++.++.. +.+...+..+.
T Consensus       248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La  325 (656)
T PRK15174        248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYA  325 (656)
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            88889999999999986    89999999876433 67789999999999999999999999998864 45567788888


Q ss_pred             HHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          369 EGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       369 ~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      .++.+.|++++|.+.++.+.+..|...
T Consensus       326 ~~l~~~G~~~eA~~~l~~al~~~P~~~  352 (656)
T PRK15174        326 RALRQVGQYTAASDEFVQLAREKGVTS  352 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCccch
Confidence            999999999999999999998887654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.84  E-value=1.1e-16  Score=162.99  Aligned_cols=335  Identities=10%  Similarity=-0.008  Sum_probs=241.4

Q ss_pred             hhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCCh-hHH----------H--
Q 015329           53 KLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRRE-GFI----------M--  119 (409)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~----------~--  119 (409)
                      .+...|++++|+..|+...+..  +.+..++..+...+.+.|++++|+..|++..+..+.... ..+          .  
T Consensus       278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            3456799999999999998876  346778888999999999999999999998866543221 111          1  


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHH---------
Q 015329          120 RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFN---------  190 (409)
Q Consensus       120 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------  190 (409)
                      .....+.+.|++++|++.|++..+.. +.+...+..+...+...|++++|...|++..+...-  +...+.         
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~--~~~a~~~L~~l~~~~  432 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG--NTNAVRGLANLYRQQ  432 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhc
Confidence            22446778999999999999988764 445667778888999999999999998776544211  122222         


Q ss_pred             ---------------------------------HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 015329          191 ---------------------------------IVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRP  237 (409)
Q Consensus       191 ---------------------------------~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~  237 (409)
                                                       .+...+...|++++|++.|++..+.... +...+..+...|.+.|++
T Consensus       433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~  511 (1157)
T PRK11447        433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQR  511 (1157)
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence                                             2334455678999999999998886543 566777788889999999


Q ss_pred             hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc--------------------------------
Q 015329          238 EIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF--------------------------------  285 (409)
Q Consensus       238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------------------------  285 (409)
                      ++|...++++.+.. +.+...+..+...+...++.++|...++.+...                                
T Consensus       512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~  590 (1157)
T PRK11447        512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA  590 (1157)
T ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence            99999999887643 223333333333333444444444443332100                                


Q ss_pred             -------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC
Q 015329          286 -------GIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWV  358 (409)
Q Consensus       286 -------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  358 (409)
                             ..+.+...+..+...+.+.|++++|++.|+...+.... +...+..+...|...|++++|.+.++...+.. +
T Consensus       591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p  668 (1157)
T PRK11447        591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-N  668 (1157)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C
Confidence                   01234556667888888999999999999999887433 67788899999999999999999999877653 3


Q ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329          359 PSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSS  396 (409)
Q Consensus       359 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  396 (409)
                      .+...+..+..++...|++++|.++++.+.+..++.++
T Consensus       669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~  706 (1157)
T PRK11447        669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP  706 (1157)
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence            45566777788899999999999999999887655443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=2.3e-17  Score=145.20  Aligned_cols=336  Identities=14%  Similarity=0.069  Sum_probs=249.7

Q ss_pred             hhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChh----------------
Q 015329           53 KLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREG----------------  116 (409)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------  116 (409)
                      .+...|+.+.|+.+++.+.+..  +.....|..+..++...|+.+.|.+.|.+..+.++. ...                
T Consensus       125 ~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~Grl~  201 (966)
T KOG4626|consen  125 ILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAEGRLE  201 (966)
T ss_pred             HHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhhcccc
Confidence            4556799999999999998876  446677888999999999999988888887765431 111                


Q ss_pred             ------------------HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHhcC
Q 015329          117 ------------------FIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRT-VKSLNAALKVLTESRDLKAIQAFLMEVP  177 (409)
Q Consensus       117 ------------------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~  177 (409)
                                        .|..|...+..+|++..|++-|++....  .|+ ...|-.|...|...+.++.|...+....
T Consensus       202 ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl  279 (966)
T KOG4626|consen  202 EAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRAL  279 (966)
T ss_pred             hhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence                              1333444455566666666666666543  333 3456666666666666666666654432


Q ss_pred             ccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCH
Q 015329          178 EKFHIQFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNL  256 (409)
Q Consensus       178 ~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~  256 (409)
                      .   ..|+ ...+..+...|...|++|.|++.|++..+.... =...|+.|.+++-..|++.+|+..++...... +...
T Consensus       280 ~---lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ha  354 (966)
T KOG4626|consen  280 N---LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHA  354 (966)
T ss_pred             h---cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccH
Confidence            2   2333 455666666777778888888888887765322 25678889999999999999999999888763 4456


Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR-KIYQTMIHY  335 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~  335 (409)
                      .+.+.+...|...|.++.|..+|....+.... -...++.|...|-+.|++++|+..|++.+..  .|+. ..|+.+...
T Consensus       355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt  431 (966)
T KOG4626|consen  355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNT  431 (966)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchH
Confidence            77888889999999999999999888775322 2456788999999999999999999988854  5654 578889999


Q ss_pred             HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHH
Q 015329          336 LCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAF  402 (409)
Q Consensus       336 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  402 (409)
                      |-..|+++.|.+.+.+.+..+ +.-.+.++.|...|-..|+..+|+.-++...+..|+++....+.+
T Consensus       432 ~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll  497 (966)
T KOG4626|consen  432 YKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL  497 (966)
T ss_pred             HHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence            999999999999998887754 333567889999999999999999999999999988876554433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.81  E-value=9.8e-16  Score=149.33  Aligned_cols=341  Identities=11%  Similarity=0.000  Sum_probs=241.0

Q ss_pred             hHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHh
Q 015329           48 PPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGK  127 (409)
Q Consensus        48 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  127 (409)
                      ..+-..+...+++++|+++|+...+..  +.+...+..+...+...|++++|...++++....+. +.. +..+..++..
T Consensus        53 ~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~  128 (765)
T PRK10049         53 AAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKR  128 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHH
Confidence            334445667899999999999988775  345566777888889999999999999998876444 444 7778888899


Q ss_pred             cCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHh--------------------------------
Q 015329          128 AGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLME--------------------------------  175 (409)
Q Consensus       128 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--------------------------------  175 (409)
                      .|+.++|+..++++.+.. +.+...+..+..++...+..+.|...++.                                
T Consensus       129 ~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~  207 (765)
T PRK10049        129 AGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKE  207 (765)
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence            999999999999998764 33455556666666666665555444432                                


Q ss_pred             --------------cCccCCCCcCHH-H----HHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcC
Q 015329          176 --------------VPEKFHIQFDIF-S----FNIVIKAFCEMGILDKAYLVMVEMQKLGVK-PDVITYTTLISAFYKDN  235 (409)
Q Consensus       176 --------------~~~~~~~~~~~~-~----~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~  235 (409)
                                    +.......|+.. .    ....+..+...|++++|+..|+.+.+.+.. |+. .-..+...|...|
T Consensus       208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g  286 (765)
T PRK10049        208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLH  286 (765)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcC
Confidence                          221111122211 1    111133456778899999999998876532 332 2223567888899


Q ss_pred             ChhhHHHHHHHHHhcCCCC---CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-----------CcC---HHHHHHHH
Q 015329          236 RPEIGNGLWNLMVCKGCFP---NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGI-----------EPD---EVTYNLVI  298 (409)
Q Consensus       236 ~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~li  298 (409)
                      ++++|+.+|+.+.+.....   .......+..++...|++++|..+++.+.+...           .|+   ...+..+.
T Consensus       287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a  366 (765)
T PRK10049        287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS  366 (765)
T ss_pred             CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence            9999999999887643111   123455666678889999999999988876531           123   22445667


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 015329          299 KGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPC  378 (409)
Q Consensus       299 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~  378 (409)
                      ..+...|+.++|+++++++...... +...+..+...+...|++++|++.+++.++.. +.+...+......+.+.|+++
T Consensus       367 ~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~  444 (765)
T PRK10049        367 QVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWR  444 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHH
Confidence            7888889999999999998876332 56778888888889999999999999888764 444667777777888899999


Q ss_pred             HHHHHHHHHHhcCCCCCc
Q 015329          379 KANTIMALVQRRVPHFSS  396 (409)
Q Consensus       379 ~a~~~~~~~~~~~~~~~~  396 (409)
                      +|..+++++.+..|+...
T Consensus       445 ~A~~~~~~ll~~~Pd~~~  462 (765)
T PRK10049        445 QMDVLTDDVVAREPQDPG  462 (765)
T ss_pred             HHHHHHHHHHHhCCCCHH
Confidence            999999999988877643

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.79  E-value=2.9e-15  Score=143.37  Aligned_cols=306  Identities=9%  Similarity=-0.076  Sum_probs=240.9

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc
Q 015329           83 FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE  162 (409)
Q Consensus        83 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  162 (409)
                      +......+.+.|++++|+..|++.....+  +..+|..+..+|.+.|++++|++.++..++.+ +.+...|..+..+|..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p--~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP--DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            44567788899999999999999887644  56788889999999999999999999998764 4466789999999999


Q ss_pred             cCCHHHHHHHHHhcCccCCCC-------------------------------cCHHHHHHH-------------------
Q 015329          163 SRDLKAIQAFLMEVPEKFHIQ-------------------------------FDIFSFNIV-------------------  192 (409)
Q Consensus       163 ~~~~~~a~~~~~~~~~~~~~~-------------------------------~~~~~~~~l-------------------  192 (409)
                      .|++++|...+.......+..                               |........                   
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL  286 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence            999988876543221111100                               000000000                   


Q ss_pred             --------HHHH------HhcCChhHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCH
Q 015329          193 --------IKAF------CEMGILDKAYLVMVEMQKLG-VKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNL  256 (409)
Q Consensus       193 --------l~~~------~~~g~~~~a~~~~~~m~~~g-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~  256 (409)
                              +..+      ...+++++|.+.|+...+.+ ..| ....|..+...+...|++++|+..++...+.. +.+.
T Consensus       287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~  365 (615)
T TIGR00990       287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT  365 (615)
T ss_pred             ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence                    0000      12357889999999998765 223 45678888888999999999999999998863 3346


Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYL  336 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  336 (409)
                      ..|..+...+...|++++|...|++..+... -+...|..+...+...|++++|...|++..+.... +...+..+...+
T Consensus       366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~  443 (615)
T TIGR00990       366 QSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHH
Confidence            6888888999999999999999999987743 26788889999999999999999999999887432 567788888999


Q ss_pred             HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          337 CQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       337 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      .+.|++++|+..|++.++.. +.+...+..+...+...|++++|++.+++..+..+...
T Consensus       444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~  501 (615)
T TIGR00990       444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK  501 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence            99999999999999988753 55678899999999999999999999999998877643

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.79  E-value=8.3e-15  Score=142.88  Aligned_cols=343  Identities=9%  Similarity=0.014  Sum_probs=252.6

Q ss_pred             CCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHH
Q 015329           45 PLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMML  124 (409)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  124 (409)
                      ......+..+.-.|+.++|++++.......  +.+...+..+..++.+.|++++|.++|++.....+. +...+..+...
T Consensus        16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~   92 (765)
T PRK10049         16 NQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILT   92 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            344455666778899999999999997643  344556888999999999999999999998877443 56667788899


Q ss_pred             HHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhH
Q 015329          125 YGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDK  204 (409)
Q Consensus       125 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  204 (409)
                      +...|++++|++.+++..+.. +.+.. +..+..++...|+.+.|...+++.....  +-+...+..+...+...|..+.
T Consensus        93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~  168 (765)
T PRK10049         93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAP  168 (765)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHH
Confidence            999999999999999998774 44556 8888999999999999999998876552  2234445556666666666554


Q ss_pred             HHH----------------------------------------------HHHHHHhC-CCCCCHH-HHH----HHHHHHH
Q 015329          205 AYL----------------------------------------------VMVEMQKL-GVKPDVI-TYT----TLISAFY  232 (409)
Q Consensus       205 a~~----------------------------------------------~~~~m~~~-g~~~~~~-~~~----~ll~~~~  232 (409)
                      |++                                              .++.+.+. ...|+.. .+.    ..+.++.
T Consensus       169 Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll  248 (765)
T PRK10049        169 ALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL  248 (765)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence            444                                              34444422 1122211 111    1133456


Q ss_pred             HcCChhhHHHHHHHHHhcCCC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc---CHHHHHHHHHHHHhcCCHH
Q 015329          233 KDNRPEIGNGLWNLMVCKGCF-PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP---DEVTYNLVIKGFCRSGHLD  308 (409)
Q Consensus       233 ~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~  308 (409)
                      ..|++++|+..|+.+.+.+.. |+. .-..+..+|...|++++|...|+++.+.....   .......+..++...|+++
T Consensus       249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~  327 (765)
T PRK10049        249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP  327 (765)
T ss_pred             HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence            778999999999999887532 322 22225678899999999999999987653211   1345666777889999999


Q ss_pred             HHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 015329          309 MAKKVYSAMLGRRL-----------MPN---RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKN  374 (409)
Q Consensus       309 ~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~  374 (409)
                      +|...++.+.....           .|+   ...+..+...+...|++++|+++++++.... +-+...+..+...+...
T Consensus       328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~  406 (765)
T PRK10049        328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQAR  406 (765)
T ss_pred             HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence            99999999886521           123   2345667778889999999999999988764 66778888889999999


Q ss_pred             CChHHHHHHHHHHHhcCCCCCc
Q 015329          375 NQPCKANTIMALVQRRVPHFSS  396 (409)
Q Consensus       375 g~~~~a~~~~~~~~~~~~~~~~  396 (409)
                      |++++|++.++++.+..|+...
T Consensus       407 g~~~~A~~~l~~al~l~Pd~~~  428 (765)
T PRK10049        407 GWPRAAENELKKAEVLEPRNIN  428 (765)
T ss_pred             CCHHHHHHHHHHHHhhCCCChH
Confidence            9999999999999999877654

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=4.5e-15  Score=125.51  Aligned_cols=355  Identities=13%  Similarity=0.148  Sum_probs=204.4

Q ss_pred             hhhcCCCcCCCCC-CCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHH--HhcCCCchh-HHHHHH
Q 015329           29 AVSLNKFPNREPL-VDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSR--LAGARRFDY-IEHLLE  104 (409)
Q Consensus        29 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~-a~~~~~  104 (409)
                      .|+++.+.+++-. |........+..+...+....+.-+|+.|.+.+ +..++..--.++..  |....+.-- -++.|-
T Consensus        99 QP~l~~F~P~~l~~~~~V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv  177 (625)
T KOG4422|consen   99 QPQLPVFRPRHLADPLQVETENNLLKMISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFV  177 (625)
T ss_pred             CccccccCchhcCCchhhcchhHHHHHHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHh
Confidence            4445555444422 333345566777888889999999999998887 55555443333322  111111111 111111


Q ss_pred             HhhhC-------------------CCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCC
Q 015329          105 HQKSL-------------------PQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRD  165 (409)
Q Consensus       105 ~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~  165 (409)
                      .|...                   -.+.++.++..+|.+.++--..+.|.++|++-.+...+.+..+||.+|.+..-.-+
T Consensus       178 ~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~  257 (625)
T KOG4422|consen  178 GMRNFGEDSTSSWKSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG  257 (625)
T ss_pred             hccccccccccccccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc
Confidence            11111                   12336778888888888888888888888888777778888888888877654443


Q ss_pred             HHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhh-H
Q 015329          166 LKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDK----AYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEI-G  240 (409)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~-a  240 (409)
                          .+++.+|.. ....||..|+|+++++..+.|+++.    |.+++.+|.+.|+.|...+|..+|..+++-++..+ +
T Consensus       258 ----K~Lv~EMis-qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a  332 (625)
T KOG4422|consen  258 ----KKLVAEMIS-QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA  332 (625)
T ss_pred             ----HHHHHHHHH-hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence                445555533 3567888888888888888887764    46677888888888888888888888887777644 3


Q ss_pred             HHHHHHHHh----cCCCC----CHhhHHHHHHHHHhcCCHhHHHHHHH--------------------------------
Q 015329          241 NGLWNLMVC----KGCFP----NLATFNVRIQHLVNKRRSWQANKLMG--------------------------------  280 (409)
Q Consensus       241 ~~~~~~m~~----~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~--------------------------------  280 (409)
                      ..++.++..    ..++|    |...|...+..|....+.+-|..+..                                
T Consensus       333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e  412 (625)
T KOG4422|consen  333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME  412 (625)
T ss_pred             HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence            344444332    22222    33444555555555555544444333                                


Q ss_pred             ----------HHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CH-------
Q 015329          281 ----------LMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG-DF-------  342 (409)
Q Consensus       281 ----------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~-------  342 (409)
                                .|.-.-.-|+..+...++++..-.|.++-.-++|.++...|...+...-.-++..+++.. +.       
T Consensus       413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Q  492 (625)
T KOG4422|consen  413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQ  492 (625)
T ss_pred             HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHH
Confidence                      332222235555666666666667777766666666666553333333333333333222 00       


Q ss_pred             -hH-----HHHH-------HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329          343 -NL-----AYIM-------CKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV  391 (409)
Q Consensus       343 -~~-----a~~~-------~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  391 (409)
                       ..     |..+       -.+|.+.  .......+.+...+.+.|+.++|-+++..+.+++
T Consensus       493 l~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~  552 (625)
T KOG4422|consen  493 LQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH  552 (625)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence             00     0000       1112222  2334455566666667777777777777664333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.79  E-value=2.3e-14  Score=137.68  Aligned_cols=335  Identities=10%  Similarity=0.024  Sum_probs=200.3

Q ss_pred             HHHhhhhcCChHHHHHHHHHhhcCCCCCCcc--chHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHh
Q 015329           50 ALVKLKAERDPEKLFQLFKANAHNRIVIENK--YAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGK  127 (409)
Q Consensus        50 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  127 (409)
                      ......+.|+++.|++.|+...+..   |+.  ..+ .++..+...|+.++|+..+++.. .+..........+...|..
T Consensus        40 ~aii~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~  114 (822)
T PRK14574         40 SLIIRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRN  114 (822)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHH
Confidence            3445667889999999999998877   443  234 77788888899999999999887 2222233444445678888


Q ss_pred             cCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 015329          128 AGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYL  207 (409)
Q Consensus       128 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~  207 (409)
                      .|++++|+++|+++.+.. +-+...+..++..+...++.++|...++.+...   .|+...+..++..+...++..+|++
T Consensus       115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~  190 (822)
T PRK14574        115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQ  190 (822)
T ss_pred             cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHH
Confidence            899999999999998875 445667777888888999999999998777655   4555555444444444566656888


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHH------------------------------------------
Q 015329          208 VMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWN------------------------------------------  245 (409)
Q Consensus       208 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~------------------------------------------  245 (409)
                      .++++.+.... +...+..+..++.+.|-...|.++..                                          
T Consensus       191 ~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~  269 (822)
T PRK14574        191 ASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK  269 (822)
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence            88888876432 44444444444444443333322221                                          


Q ss_pred             ------HHHhc-CCCCCH-h----hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 015329          246 ------LMVCK-GCFPNL-A----TFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKV  313 (409)
Q Consensus       246 ------~m~~~-~~~~~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  313 (409)
                            .+... +..|.. .    ..--.+-++...|++.++++.|+.+...|.+....+-..+.++|...+.+++|..+
T Consensus       270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l  349 (822)
T PRK14574        270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI  349 (822)
T ss_pred             HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence                  11110 011211 1    11122335555666666666666666655443444555666666666666666666


Q ss_pred             HHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-----------CCC--HH-HHHHHHHHHHhC
Q 015329          314 YSAMLGRR-----LMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNW-----------VPS--VD-TISALLEGLKKN  374 (409)
Q Consensus       314 ~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~~~--~~-~~~~l~~~~~~~  374 (409)
                      |+.+....     ..++......|..+|...+++++|..+++++.+.--           .|+  -. .+..++..+...
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~  429 (822)
T PRK14574        350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL  429 (822)
T ss_pred             HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence            66654432     122333345566666666666666666666554210           111  11 223334555566


Q ss_pred             CChHHHHHHHHHHHhcCCCC
Q 015329          375 NQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       375 g~~~~a~~~~~~~~~~~~~~  394 (409)
                      |+..+|++.++++....|.+
T Consensus       430 gdl~~Ae~~le~l~~~aP~n  449 (822)
T PRK14574        430 NDLPTAQKKLEDLSSTAPAN  449 (822)
T ss_pred             CCHHHHHHHHHHHHHhCCCC
Confidence            66666666666665555444

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.78  E-value=3.3e-15  Score=152.25  Aligned_cols=323  Identities=9%  Similarity=-0.021  Sum_probs=211.2

Q ss_pred             hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHH--------
Q 015329           54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLY--------  125 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--------  125 (409)
                      +.+.+++++|++.|+.+.+..  +.+...+..+...+...|++++|++.|+++.+..+. +...+..+...|        
T Consensus       361 ~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A  437 (1157)
T PRK11447        361 ALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKA  437 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHH
Confidence            457799999999999998886  345667778889999999999999999998876543 334444444444        


Q ss_pred             ----------------------------------HhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHH
Q 015329          126 ----------------------------------GKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQA  171 (409)
Q Consensus       126 ----------------------------------~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  171 (409)
                                                        ...|++++|++.|++..+.. +-+...+..+...|.+.|++++|..
T Consensus       438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~  516 (1157)
T PRK11447        438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA  516 (1157)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence                                              23444444444444444332 1223334444444444444444444


Q ss_pred             HHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHHcCChhhHHH
Q 015329          172 FLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVI---------TYTTLISAFYKDNRPEIGNG  242 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---------~~~~ll~~~~~~~~~~~a~~  242 (409)
                      .+++......  .+...+..+...+...|+.++|...++.+......++..         .+..+...+...|+.++|..
T Consensus       517 ~l~~al~~~P--~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~  594 (1157)
T PRK11447        517 LMRRLAQQKP--NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA  594 (1157)
T ss_pred             HHHHHHHcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence            4444332211  122222222233344444444444444432211111110         11123345556667777776


Q ss_pred             HHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 015329          243 LWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRL  322 (409)
Q Consensus       243 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  322 (409)
                      +++.     .+.+...+..+...+.+.|++++|+..|++..+.... +...+..+...|...|++++|.+.++...+...
T Consensus       595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p  668 (1157)
T PRK11447        595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATAN  668 (1157)
T ss_pred             HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence            6651     2456667778889999999999999999999987533 678889999999999999999999998876522


Q ss_pred             CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329          323 MPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNW--VP---SVDTISALLEGLKKNNQPCKANTIMALVQR  389 (409)
Q Consensus       323 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  389 (409)
                       .+...+..+..++...|++++|.+++++++...-  .|   +...+..+...+...|++++|.+.++....
T Consensus       669 -~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        669 -DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             -CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             2456677788889999999999999999887531  22   234566677889999999999999999864

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.75  E-value=1.2e-13  Score=132.79  Aligned_cols=336  Identities=12%  Similarity=-0.001  Sum_probs=228.9

Q ss_pred             hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329           54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH  133 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  133 (409)
                      +...|++++|+++|+.+.+..  +.++..+..++..+...++.++|++.++.+....+.  ...+..++..+...++..+
T Consensus       112 y~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~l~layL~~~~~~~~~  187 (822)
T PRK14574        112 YRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT--VQNYMTLSYLNRATDRNYD  187 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHHHHHHHHHHhcchHHH
Confidence            334577777777777777766  334455556667777777777777777777655332  2233333344444555555


Q ss_pred             HHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHh--------------------------------------
Q 015329          134 AMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLME--------------------------------------  175 (409)
Q Consensus       134 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--------------------------------------  175 (409)
                      |++.++++.+.+ +-+...+..+..++.+.|-...|.++..+                                      
T Consensus       188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~  266 (822)
T PRK14574        188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI  266 (822)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            777777777664 33455555566665555544444433321                                      


Q ss_pred             ----------cCccCCCCcCH-----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhH
Q 015329          176 ----------VPEKFHIQFDI-----FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIG  240 (409)
Q Consensus       176 ----------~~~~~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a  240 (409)
                                +....+-.|..     ....-.+-++...|++.++++.|+.+...|.+....+-..+.++|...+++++|
T Consensus       267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA  346 (822)
T PRK14574        267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA  346 (822)
T ss_pred             HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence                      11111111221     112234456777888899999999998888766777888889999999999999


Q ss_pred             HHHHHHHHhcC-----CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-------------CcCHH-HHHHHHHHH
Q 015329          241 NGLWNLMVCKG-----CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGI-------------EPDEV-TYNLVIKGF  301 (409)
Q Consensus       241 ~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------------~p~~~-~~~~li~~~  301 (409)
                      +.++..+....     ..++......|..+|...+++++|..+++++.+...             .||-. .+..++..+
T Consensus       347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~  426 (822)
T PRK14574        347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL  426 (822)
T ss_pred             HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence            99999886643     123444457788899999999999999999877321             22322 234456677


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 015329          302 CRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKAN  381 (409)
Q Consensus       302 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  381 (409)
                      ...|+..+|++.++++...... |......+...+...|.+.+|.+.++...... +-+..+......++...|++++|.
T Consensus       427 ~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~  504 (822)
T PRK14574        427 VALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQME  504 (822)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHH
Confidence            8889999999999998776433 78888888889999999999999997655542 555667777888888899999999


Q ss_pred             HHHHHHHhcCCCCCc
Q 015329          382 TIMALVQRRVPHFSS  396 (409)
Q Consensus       382 ~~~~~~~~~~~~~~~  396 (409)
                      .+.+.+.+..|+...
T Consensus       505 ~~~~~l~~~~Pe~~~  519 (822)
T PRK14574        505 LLTDDVISRSPEDIP  519 (822)
T ss_pred             HHHHHHHhhCCCchh
Confidence            999988888877653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.75  E-value=2.3e-15  Score=132.82  Aligned_cols=303  Identities=13%  Similarity=0.035  Sum_probs=244.8

Q ss_pred             hhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHH
Q 015329           55 KAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHA  134 (409)
Q Consensus        55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  134 (409)
                      ...|+.++|...+....+..  +.=..+|+.|...+-.+|++.+|++-|++..+..+.. .+.|-.|...|...+.+++|
T Consensus       195 ka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f-~dAYiNLGnV~ke~~~~d~A  271 (966)
T KOG4626|consen  195 KAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-LDAYINLGNVYKEARIFDRA  271 (966)
T ss_pred             HhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc-hHHHhhHHHHHHHHhcchHH
Confidence            34567777777777666554  1223457777777888899999999999998876543 45555699999999999999


Q ss_pred             HHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015329          135 MDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQ  213 (409)
Q Consensus       135 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~  213 (409)
                      +..|.+..... +-...++..+...|...|..+.|...+++..+.   .|+ ...|+.|..++-..|++.+|.+.|.+..
T Consensus       272 vs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~---~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL  347 (966)
T KOG4626|consen  272 VSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL---QPNFPDAYNNLANALKDKGSVTEAVDCYNKAL  347 (966)
T ss_pred             HHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc---CCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence            99999987653 334567888999999999999999999876554   454 6689999999999999999999999999


Q ss_pred             hCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC-HH
Q 015329          214 KLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD-EV  292 (409)
Q Consensus       214 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~  292 (409)
                      ..... .....+.|.+.+...|.+++|..+|....+-. +.-...++.+...|-+.|++++|+..|++....  .|+ ..
T Consensus       348 ~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAd  423 (966)
T KOG4626|consen  348 RLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFAD  423 (966)
T ss_pred             HhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHH
Confidence            87543 56778889999999999999999999988752 334567899999999999999999999999865  554 67


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 015329          293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS-VDTISALLEGL  371 (409)
Q Consensus       293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~  371 (409)
                      .|+.+-..|-..|+.+.|.+.+.+.+..+.. -...++.|...|-.+|++.+|+.-+++.++.  +|| +..|..++.++
T Consensus       424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~l  500 (966)
T KOG4626|consen  424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCL  500 (966)
T ss_pred             HHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence            8899999999999999999999998876322 3467889999999999999999999998876  454 34555555443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.73  E-value=2.6e-13  Score=133.13  Aligned_cols=324  Identities=10%  Similarity=-0.013  Sum_probs=241.6

Q ss_pred             CChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhC-C-CCCChhHHHHHHHHHHhcCC---hH
Q 015329           58 RDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSL-P-QGRREGFIMRIMMLYGKAGM---IK  132 (409)
Q Consensus        58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~  132 (409)
                      +...++...+..+.+..  +-+......+.-...+.|+.++|.++++..... + ...+......++..|.+.+.   ..
T Consensus       356 ~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  433 (987)
T PRK09782        356 RNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA  433 (987)
T ss_pred             CchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence            45555556666666553  346666777777788999999999999988753 1 12234555578888888766   33


Q ss_pred             HHHHH-------------------------HHHhhhcCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC
Q 015329          133 HAMDT-------------------------FYDMHLYGCKR--TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD  185 (409)
Q Consensus       133 ~a~~~-------------------------~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  185 (409)
                      ++..+                         +...... -++  +...|..+..++.. ++.++|...+.+....   .|+
T Consensus       434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd  508 (987)
T PRK09782        434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPD  508 (987)
T ss_pred             HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCc
Confidence            33322                         1111111 133  56677888877776 7777788866555444   356


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH  265 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  265 (409)
                      ......+...+...|++++|...|+++...  .|+...+..+..++.+.|+.++|...++...+.+ +.+...+..+...
T Consensus       509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~  585 (987)
T PRK09782        509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ  585 (987)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence            544444555667899999999999998664  3444556677788899999999999999998864 3333344444445


Q ss_pred             HHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 015329          266 LVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLA  345 (409)
Q Consensus       266 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  345 (409)
                      ....|++++|...+++..+.  .|+...+..+..++.+.|+.++|...+++....... +...++.+..++...|++++|
T Consensus       586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence            55669999999999999877  457888999999999999999999999999987433 667788888899999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          346 YIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       346 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      ...+++.++.. +-+...+..+..++...|++++|+..++++.+..|...
T Consensus       663 i~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a  711 (987)
T PRK09782        663 REMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA  711 (987)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence            99999988864 56778899999999999999999999999999887653

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=4.6e-14  Score=119.50  Aligned_cols=319  Identities=16%  Similarity=0.201  Sum_probs=239.1

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHH--HHhcCChHHH-HHHHHHhhhcC--------------
Q 015329           83 FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMML--YGKAGMIKHA-MDTFYDMHLYG--------------  145 (409)
Q Consensus        83 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a-~~~~~~m~~~~--------------  145 (409)
                      =+.++. ++.+|.+.++.-+|+.|...+...++.+-..|++.  |....++--| .+.|-.|...|              
T Consensus       119 E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd  197 (625)
T KOG4422|consen  119 ENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD  197 (625)
T ss_pred             hhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence            344444 45678999999999999999988888876666543  2222222211 12232232211              


Q ss_pred             -----CCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 015329          146 -----CKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD  220 (409)
Q Consensus       146 -----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~  220 (409)
                           .+-+..+|..+|.++++-...+.|..++++.... ..+.+..+||.+|.+-.-    ....+++.+|....+.||
T Consensus       198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pn  272 (625)
T KOG4422|consen  198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPN  272 (625)
T ss_pred             HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCc
Confidence                 2457789999999999999999999999887554 457789999999875432    223788999999999999


Q ss_pred             HHHHHHHHHHHHHcCChhh----HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHH-HHHHHHH----HHcCCCc--
Q 015329          221 VITYTTLISAFYKDNRPEI----GNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQA-NKLMGLM----QRFGIEP--  289 (409)
Q Consensus       221 ~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~----~~~~~~p--  289 (409)
                      ..|||+++++..+.|+++.    |.+++.+|++-|+.|...+|..+|..+++.++..+. ..++.++    ..+.++|  
T Consensus       273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~  352 (625)
T KOG4422|consen  273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT  352 (625)
T ss_pred             hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence            9999999999999998865    578889999999999999999999999999888553 3333333    3333333  


Q ss_pred             --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC
Q 015329          290 --DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR----LMPNR---KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS  360 (409)
Q Consensus       290 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~  360 (409)
                        |...|...+..|....+.+-|.++..-.....    +.|+.   .-|..+....+.....+.....|+.|+-.-+-|+
T Consensus       353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~  432 (625)
T KOG4422|consen  353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH  432 (625)
T ss_pred             CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence              45667778888889999998888776655431    23332   2355677788888999999999999998888899


Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhhc
Q 015329          361 VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILS  407 (409)
Q Consensus       361 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  407 (409)
                      ..+...++++....|.++-..++|..++..+....+.....++..++
T Consensus       433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~  479 (625)
T KOG4422|consen  433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA  479 (625)
T ss_pred             chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence            99999999999999999999999999888876666555555554443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.70  E-value=8.3e-14  Score=113.79  Aligned_cols=293  Identities=11%  Similarity=0.042  Sum_probs=214.3

Q ss_pred             hhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCCh---hHHHHHHHHHHhcCCh
Q 015329           55 KAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRRE---GFIMRIMMLYGKAGMI  131 (409)
Q Consensus        55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~  131 (409)
                      .-.+++++|.++|-.|.+.+  +.+..+.-+|.+.|.+.|..|+|+.+.+.+...+.-...   .....|..-|...|-+
T Consensus        46 LLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~  123 (389)
T COG2956          46 LLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL  123 (389)
T ss_pred             HhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence            34569999999999998866  455666778889999999999999999999876543322   2233577789999999


Q ss_pred             HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC---HHHHHHHHHHHHhcCChhHHHHH
Q 015329          132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD---IFSFNIVIKAFCEMGILDKAYLV  208 (409)
Q Consensus       132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~  208 (409)
                      +.|+++|..+.+.| ..-......|+..|-...+|++|..+-+++.+-.+-+..   ...|.-+...+....+++.|..+
T Consensus       124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~  202 (389)
T COG2956         124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL  202 (389)
T ss_pred             hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            99999999998765 455667888999999999998888887655443222222   33466677777778889999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 015329          209 MVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE  288 (409)
Q Consensus       209 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  288 (409)
                      +.+..+.+.+ .+..--.+.+.....|+++.|.+.|+...+.+..--..+...+..+|...|+.++....+..+.+....
T Consensus       203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g  281 (389)
T COG2956         203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG  281 (389)
T ss_pred             HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence            9998886543 344444566778889999999999999988865555677788888999999999999999888776433


Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHhC
Q 015329          289 PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE---GDFNLAYIMCKDSMKK  355 (409)
Q Consensus       289 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~  355 (409)
                      +  ..-..+...-....-.+.|..++.+-...  +|+...+..+|..-...   |...+-+.+++.|...
T Consensus       282 ~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         282 A--DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             c--cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence            3  33344444444455566666666665554  68888888888876432   3355556666666543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.69  E-value=2e-16  Score=136.32  Aligned_cols=258  Identities=10%  Similarity=0.063  Sum_probs=66.0

Q ss_pred             HHHHHhcCCCchhHHHHHHHhhhCC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccC
Q 015329           86 TVSRLAGARRFDYIEHLLEHQKSLP-QGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESR  164 (409)
Q Consensus        86 li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~  164 (409)
                      +...+.+.|++++|.++++...... ...+..+|..+...+...++++.|.+.++++...+ +-+...+..++.. ...+
T Consensus        14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence            3555556666666666664332222 23344555555555555666666666666665544 2233444444444 4555


Q ss_pred             CHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChhhHHHH
Q 015329          165 DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLG-VKPDVITYTTLISAFYKDNRPEIGNGL  243 (409)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~  243 (409)
                      ++++|..++....++   .++...+..++..+.+.|+++++.++++.+.... ...+...|..+...+.+.|+.++|++.
T Consensus        92 ~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   92 DPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            555555555333222   1233444455555555555555555555554321 223444455555555555555555555


Q ss_pred             HHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015329          244 WNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM  323 (409)
Q Consensus       244 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  323 (409)
                      +++..+.. +.|......++..+...|+.+++..+++...+.. +.|...+..+..+|...|+.++|..+|++..+... 
T Consensus       169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-  245 (280)
T PF13429_consen  169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-  245 (280)
T ss_dssp             HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-
Confidence            55555542 2234445555555555555555555555544432 22333444555555555555555555555544321 


Q ss_pred             CCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329          324 PNRKIYQTMIHYLCQEGDFNLAYIMCKD  351 (409)
Q Consensus       324 p~~~~~~~li~~~~~~g~~~~a~~~~~~  351 (409)
                      .|......+..++...|+.++|.++.++
T Consensus       246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~  273 (280)
T PF13429_consen  246 DDPLWLLAYADALEQAGRKDEALRLRRQ  273 (280)
T ss_dssp             T-HHHHHHHHHHHT--------------
T ss_pred             cccccccccccccccccccccccccccc
Confidence            1444445555555555555555555444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.69  E-value=6.3e-13  Score=119.92  Aligned_cols=285  Identities=12%  Similarity=0.081  Sum_probs=220.0

Q ss_pred             cCCCchhHHHHHHHhhhCCCCCChhHHH-HHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHH--HHHHHHHccCCHHH
Q 015329           92 GARRFDYIEHLLEHQKSLPQGRREGFIM-RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLN--AALKVLTESRDLKA  168 (409)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~  168 (409)
                      ..|+++.|++.+........  .+..+. ....+..+.|+++.|.+.|.++.+.  .|+.....  .....+...|+++.
T Consensus        96 ~eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~  171 (398)
T PRK10747         96 AEGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA  171 (398)
T ss_pred             hCCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence            36999999988887655432  233333 3345558999999999999999764  55554333  34678899999999


Q ss_pred             HHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCChhhHH
Q 015329          169 IQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV-------ITYTTLISAFYKDNRPEIGN  241 (409)
Q Consensus       169 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~~~~~~a~  241 (409)
                      |...++++.+..  +-+...+..+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...
T Consensus       172 Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~  249 (398)
T PRK10747        172 ARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK  249 (398)
T ss_pred             HHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            999998876553  335677888999999999999999999999997765322       13333444444555666777


Q ss_pred             HHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015329          242 GLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR  321 (409)
Q Consensus       242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  321 (409)
                      ++|+.+.+. .+.++.....+...+...|+.++|.+++++..+.  .||...  .++.+....++.+++.+..+...+..
T Consensus       250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~  324 (398)
T PRK10747        250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH  324 (398)
T ss_pred             HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC
Confidence            777776543 3557888899999999999999999999999885  445532  23444456699999999999998774


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329          322 LMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRR  390 (409)
Q Consensus       322 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  390 (409)
                      .. |...+..+...|.+.|++++|.+.|+.+.+.  .|+..++..+...+.+.|+.++|.+.+++....
T Consensus       325 P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        325 GD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            33 6667889999999999999999999999886  699999999999999999999999999987543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.68  E-value=2.5e-16  Score=135.77  Aligned_cols=261  Identities=12%  Similarity=0.027  Sum_probs=115.3

Q ss_pred             HhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCh
Q 015329           52 VKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMI  131 (409)
Q Consensus        52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  131 (409)
                      ..+...|++++|+++++........+.+...|..+.......++++.|++.++.+...+.. +...+..++.. ...+++
T Consensus        16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~   93 (280)
T PF13429_consen   16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP   93 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence            4456789999999999655433211344455566666777889999999999999877655 66677778777 799999


Q ss_pred             HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 015329          132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVE  211 (409)
Q Consensus       132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  211 (409)
                      ++|.+++....+.  .++...+..++..+...++++.+..+++........+.+...|..+...+.+.|+.++|++.|++
T Consensus        94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~  171 (280)
T PF13429_consen   94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK  171 (280)
T ss_dssp             --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999887554  35667788899999999999999999987655444566788899999999999999999999999


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH
Q 015329          212 MQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE  291 (409)
Q Consensus       212 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~  291 (409)
                      ..+.... |......++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|...|++..+.. +.|.
T Consensus       172 al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~  248 (280)
T PF13429_consen  172 ALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP  248 (280)
T ss_dssp             HHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred             HHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence            9987543 67788899999999999999999999988764 5677788899999999999999999999998864 2378


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329          292 VTYNLVIKGFCRSGHLDMAKKVYSAMLG  319 (409)
Q Consensus       292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~  319 (409)
                      .....+..++...|+.++|+++..+...
T Consensus       249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  249 LWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccc
Confidence            8888999999999999999999887654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.68  E-value=1.9e-12  Score=127.12  Aligned_cols=330  Identities=8%  Similarity=-0.045  Sum_probs=243.4

Q ss_pred             hhhhcCChHHHHHHHHHhhcC-CCCCCccchHHHHHHHHhcCCCc---hhHHHH----------------------HHHh
Q 015329           53 KLKAERDPEKLFQLFKANAHN-RIVIENKYAFEDTVSRLAGARRF---DYIEHL----------------------LEHQ  106 (409)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~---~~a~~~----------------------~~~~  106 (409)
                      .+...|+.++|.++|+..... +.-..+......++..+.+.+..   .++..+                      ++..
T Consensus       385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (987)
T PRK09782        385 QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI  464 (987)
T ss_pred             HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence            355788999999999998763 21233333444667777666552   222222                      2222


Q ss_pred             hhC-CC-CC--ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCC
Q 015329          107 KSL-PQ-GR--REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHI  182 (409)
Q Consensus       107 ~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  182 (409)
                      ... +. +.  ....+..+..++.. ++.++|+..|.+....  .|+......+...+...|++++|...++++...   
T Consensus       465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---  538 (987)
T PRK09782        465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH---  538 (987)
T ss_pred             HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---
Confidence            211 11 22  55667777777776 8999999988887765  466554444455557899999999999876443   


Q ss_pred             CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329          183 QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVR  262 (409)
Q Consensus       183 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  262 (409)
                      +|+...+..+...+.+.|++++|...|+...+.+.. +...+..+.......|++++|...+++..+.  .|+...|..+
T Consensus       539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~L  615 (987)
T PRK09782        539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVAR  615 (987)
T ss_pred             CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence            445555677788899999999999999999986522 3333334444455669999999999999886  4678899999


Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329          263 IQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF  342 (409)
Q Consensus       263 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  342 (409)
                      ..++.+.|+.++|...+++..+.... +...++.+..++...|+.++|+..++...+.... +...+..+..++...|++
T Consensus       616 A~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~  693 (987)
T PRK09782        616 ATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDM  693 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCH
Confidence            99999999999999999999988533 6778888888999999999999999999887433 677889999999999999


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          343 NLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       343 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      ++|...+++.++.. +-+..+.........+..++++|.+-+++....++..
T Consensus       694 ~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~  744 (987)
T PRK09782        694 AATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS  744 (987)
T ss_pred             HHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence            99999999998764 2333555566677777788888888887766655443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.67  E-value=7e-13  Score=119.60  Aligned_cols=287  Identities=10%  Similarity=0.009  Sum_probs=220.3

Q ss_pred             hcCChHHHHHHHHHhhcCCCCCCccch-HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHH
Q 015329           56 AERDPEKLFQLFKANAHNRIVIENKYA-FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHA  134 (409)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  134 (409)
                      ..|+++.|.+.+....+..   +++.. |.....+..+.|+++.|.+.+.++.+..+.............+...|+++.|
T Consensus        96 ~eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         96 AEGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             hCCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHH
Confidence            3599999998888765543   22333 4334566689999999999999998764432222222346788999999999


Q ss_pred             HHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCH------HHHHHHHHHHHhcCChhHHHHH
Q 015329          135 MDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDI------FSFNIVIKAFCEMGILDKAYLV  208 (409)
Q Consensus       135 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~  208 (409)
                      .+.++++.+.+ +-+......+...|.+.|+++++..++..+.+.....++.      .+|..++.......+.+...++
T Consensus       173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~  251 (398)
T PRK10747        173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW  251 (398)
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            99999998876 5567889999999999999999999998776554333331      2333444444455566667777


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 015329          209 MVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE  288 (409)
Q Consensus       209 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  288 (409)
                      ++.+.+. .+.+......+...+...|+.++|..+++...+.  .++...  .++.+....++.+++.+..+...+....
T Consensus       252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~  326 (398)
T PRK10747        252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD  326 (398)
T ss_pred             HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence            7766543 2347788888999999999999999999999884  455532  2344555669999999999999887533


Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329          289 PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       289 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  354 (409)
                       |...+..+...|.+.|++++|.+.|+...+.  .|+...+..+...+.+.|+.++|.+++++.+.
T Consensus       327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             6677888999999999999999999999976  79999999999999999999999999998654

>TIGR00540 hemY_coli hemY protein

Probab=99.67  E-value=9.5e-13  Score=119.42  Aligned_cols=291  Identities=11%  Similarity=-0.019  Sum_probs=211.5

Q ss_pred             hcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCH--HhHHHHHHHHHccCCHHH
Q 015329           91 AGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTV--KSLNAALKVLTESRDLKA  168 (409)
Q Consensus        91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~  168 (409)
                      ...|+++.|.+.+....+..+. ....+-....++.+.|+++.|.+.|.+..+.  .|+.  ..--.....+...|+++.
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence            4679999999999887765432 2223334567788899999999999998765  3444  334445888889999999


Q ss_pred             HHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HHcCChhhHHHHH
Q 015329          169 IQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYT-TLISAF---YKDNRPEIGNGLW  244 (409)
Q Consensus       169 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~  244 (409)
                      |...++.+.+..  +-+...+..+...+.+.|+++.|.+.+..+.+.+.. +...+. .-..++   ...+..+++.+.+
T Consensus       172 Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L  248 (409)
T TIGR00540       172 ARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL  248 (409)
T ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            999998886653  335667889999999999999999999999998765 333332 122222   2233333334455


Q ss_pred             HHHHhcC---CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329          245 NLMVCKG---CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVT---YNLVIKGFCRSGHLDMAKKVYSAML  318 (409)
Q Consensus       245 ~~m~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~  318 (409)
                      ..+.+..   .+.+...+..+...+...|+.++|.+++++..+..  ||...   ...........++.+.+.+.++...
T Consensus       249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l  326 (409)
T TIGR00540       249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA  326 (409)
T ss_pred             HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence            5554432   12378888999999999999999999999999874  33331   1222222344578888999998887


Q ss_pred             hCCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329          319 GRRLMPNR--KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRR  390 (409)
Q Consensus       319 ~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  390 (409)
                      +.... |.  ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++....
T Consensus       327 k~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       327 KNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            76222 33  5567889999999999999999995333334799999999999999999999999999986543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=99.65  E-value=8.7e-13  Score=119.64  Aligned_cols=290  Identities=12%  Similarity=0.018  Sum_probs=212.6

Q ss_pred             hcCChHHHHHHHHHhhcCCCCCCccch-HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHH
Q 015329           56 AERDPEKLFQLFKANAHNRIVIENKYA-FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHA  134 (409)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  134 (409)
                      ..|+++.|.+.+....+..   |++.. +-....+....|+.+.|.+.++...+..+.....+.......+...|+++.|
T Consensus        96 ~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            5799999999999887665   55444 3445678888999999999999987654433333444467888999999999


Q ss_pred             HHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHH-HHHHH---HHHhcCChhHHHHHHH
Q 015329          135 MDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSF-NIVIK---AFCEMGILDKAYLVMV  210 (409)
Q Consensus       135 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~ll~---~~~~~g~~~~a~~~~~  210 (409)
                      .+.++.+.+.+ +-+..++..+...+...|+++.+...+..+.+. +.. +...+ ..-..   .....+..+.+.+.+.
T Consensus       173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~  249 (409)
T TIGR00540       173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL  249 (409)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            99999999876 556778999999999999999999999777554 332 22222 11111   1233333333444555


Q ss_pred             HHHhCCC---CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhh---HHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329          211 EMQKLGV---KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLAT---FNVRIQHLVNKRRSWQANKLMGLMQR  284 (409)
Q Consensus       211 ~m~~~g~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~  284 (409)
                      .+.+...   +.+...+..+...+...|+.++|.+++++..+..  ||...   ...........++.+.+.+.++...+
T Consensus       250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk  327 (409)
T TIGR00540       250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK  327 (409)
T ss_pred             HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence            5554322   1378888899999999999999999999999863  44332   12222233445788889999988877


Q ss_pred             cCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329          285 FGIEPDE--VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       285 ~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  354 (409)
                      .... |.  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus       328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6322 34  566688899999999999999999644444578999999999999999999999999998643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=9.6e-14  Score=123.95  Aligned_cols=290  Identities=11%  Similarity=-0.061  Sum_probs=225.3

Q ss_pred             CchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC--CCCCHHhHHHHHHHHHccCCH-HHHHH
Q 015329           95 RFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYG--CKRTVKSLNAALKVLTESRDL-KAIQA  171 (409)
Q Consensus        95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~-~~a~~  171 (409)
                      +..+|..+|+.+...- .-+..+...+..+|...+++++|.++|+.+.+..  ..-+..+|.+.+--+-+.-.. -.+..
T Consensus       334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~  412 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD  412 (638)
T ss_pred             HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence            4568888888855443 3345677788999999999999999999997753  122556777777665444333 33344


Q ss_pred             HHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Q 015329          172 FLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKG  251 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  251 (409)
                      +.+..      +-.+.+|.++.++|.-.++.+.|++.|++..+.+.. ..++|+.+..-+.....+|.|...|+......
T Consensus       413 Li~~~------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  413 LIDTD------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             HHhhC------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence            44221      225679999999999999999999999999986433 78999999999999999999999999887652


Q ss_pred             CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 015329          252 CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQT  331 (409)
Q Consensus       252 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  331 (409)
                       +.+-..|.-+...|.+.++++.|+-.|++..+.+.. +.+....+...+-+.|+.|+|++++++......+ |+..--.
T Consensus       486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~  562 (638)
T KOG1126|consen  486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH  562 (638)
T ss_pred             -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence             223445555778999999999999999999887643 6777778888899999999999999999887655 4444445


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329          332 MIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSS  396 (409)
Q Consensus       332 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  396 (409)
                      .+..+...+++++|+..++++.+. ++-+...+..+...|.+.|+.+.|+.-|.-+.+.+|.-.-
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            566777899999999999998775 2444456677779999999999999999999988876543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.64  E-value=3e-12  Score=118.21  Aligned_cols=326  Identities=12%  Similarity=0.036  Sum_probs=256.0

Q ss_pred             hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 015329           56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAM  135 (409)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  135 (409)
                      ..|+.++|.+++.++.++.  +-....|.+|...|-..|+.+++...+-.+-...+. +...|..+.....+.|++++|.
T Consensus       151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHH
Confidence            3499999999999999987  567788999999999999999999887766655544 6799999999999999999999


Q ss_pred             HHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC----HHHHHHHHHHHHhcCChhHHHHHHHH
Q 015329          136 DTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD----IFSFNIVIKAFCEMGILDKAYLVMVE  211 (409)
Q Consensus       136 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~  211 (409)
                      -.|.+.++.. +++...+-.-...|-+.|+...|..-|.++....+ +.|    ...--.+++.+...++-+.|.+.++.
T Consensus       228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~  305 (895)
T KOG2076|consen  228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEG  305 (895)
T ss_pred             HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999876 56666666678889999999888888877755433 112    22334456778888888999998888


Q ss_pred             HHhC-CCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---------------------------CCHhhHHHHH
Q 015329          212 MQKL-GVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCF---------------------------PNLATFNVRI  263 (409)
Q Consensus       212 m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------~~~~~~~~ll  263 (409)
                      .... +-..+...+++++..+.+...++.+......+......                           ++...+ -++
T Consensus       306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~  384 (895)
T KOG2076|consen  306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLM  384 (895)
T ss_pred             HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHh
Confidence            8762 22346777889999999999999999988888762222                           222221 122


Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 015329          264 QHLVNKRRSWQANKLMGLMQRFGIEP--DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGD  341 (409)
Q Consensus       264 ~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  341 (409)
                      -++...+..+....+.....+..+.|  +...|.-+..+|.+.|++.+|+.+|..+......-+...|-.+..+|...|.
T Consensus       385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e  464 (895)
T KOG2076|consen  385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE  464 (895)
T ss_pred             hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence            34445555566666666666666433  5678899999999999999999999999988555578899999999999999


Q ss_pred             HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015329          342 FNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQ  388 (409)
Q Consensus       342 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  388 (409)
                      +++|.+.|+..+... +-+...--.|-..+.+.|+.++|.+.++.+.
T Consensus       465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            999999999988764 4556667777788999999999999999876

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.60  E-value=4e-12  Score=104.09  Aligned_cols=295  Identities=8%  Similarity=0.020  Sum_probs=216.8

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCH------HhHHHH
Q 015329           83 FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTV------KSLNAA  156 (409)
Q Consensus        83 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~l  156 (409)
                      |..=++.+ -+.+.++|.++|-+|.+..+. +..+..+|.+.|.+.|.++.|+.+-..+.++   ||.      .....|
T Consensus        39 Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL  113 (389)
T COG2956          39 YVKGLNFL-LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQL  113 (389)
T ss_pred             HHhHHHHH-hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHH
Confidence            44444444 346789999999999875432 5566668999999999999999999998864   442      234556


Q ss_pred             HHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHH
Q 015329          157 LKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV----ITYTTLISAFY  232 (409)
Q Consensus       157 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~  232 (409)
                      .+-|...|-+|.|+.+|..+.+....  -......|+..|-...+|++|+++-+++.+.|..+..    ..|--+...+.
T Consensus       114 ~~Dym~aGl~DRAE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~  191 (389)
T COG2956         114 GRDYMAAGLLDRAEDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL  191 (389)
T ss_pred             HHHHHHhhhhhHHHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence            77788899999999999877654322  2456788999999999999999999999987654332    23444555555


Q ss_pred             HcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 015329          233 KDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKK  312 (409)
Q Consensus       233 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  312 (409)
                      ...+.+.|..++.+..+.+ +..+..--.+-+.....|++.+|.+.++.+.+.+..--..+...|..+|.+.|+.++...
T Consensus       192 ~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~  270 (389)
T COG2956         192 ASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN  270 (389)
T ss_pred             hhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            6788999999999988864 333444445667888899999999999999998666567788899999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CChHHHHHHHHHHHh
Q 015329          313 VYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKN---NQPCKANTIMALVQR  389 (409)
Q Consensus       313 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~  389 (409)
                      .+..+.+...  +...-..+-+.-....-.+.|...+.+-+..  +|+...+..++..-...   |...+....++.|..
T Consensus       271 fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         271 FLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             HHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            9999887733  3333444444444455566777766665655  69999999999776553   345555666666653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=7.7e-12  Score=107.26  Aligned_cols=288  Identities=12%  Similarity=0.012  Sum_probs=219.8

Q ss_pred             CCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC--CCCHHhHHHHHHHHHccCCH-HHH
Q 015329           93 ARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGC--KRTVKSLNAALKVLTESRDL-KAI  169 (409)
Q Consensus        93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~-~~a  169 (409)
                      ....+++.+=.+.....|...+...-+....+.-...++++|+.+|+++.+.+.  --|..+|..++-.--.+... -.|
T Consensus       240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA  319 (559)
T KOG1155|consen  240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA  319 (559)
T ss_pred             HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence            334555555555566666554454444555566678889999999999877641  12556777766555444444 444


Q ss_pred             HHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329          170 QAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVC  249 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  249 (409)
                      ..++ .+ .+  .  -..|+.++.+.|.-.++.++|...|++..+.+.. ....|+.+.+-|...++...|.+-++...+
T Consensus       320 ~~v~-~i-dK--y--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd  392 (559)
T KOG1155|consen  320 QNVS-NI-DK--Y--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD  392 (559)
T ss_pred             HHHH-Hh-cc--C--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence            4444 33 22  2  3357778888899999999999999999998655 678899999999999999999999999998


Q ss_pred             cCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 015329          250 KGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIY  329 (409)
Q Consensus       250 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  329 (409)
                      -+ +.|-..|-.+.++|.-.+.+.-|+-.|++..+.... |...|.+|..+|.+.++.++|++.|.+....|-. +...+
T Consensus       393 i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l  469 (559)
T KOG1155|consen  393 IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSAL  469 (559)
T ss_pred             cC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHH
Confidence            74 778999999999999999999999999999887432 8899999999999999999999999999987654 67889


Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHHHh----CCC-CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329          330 QTMIHYLCQEGDFNLAYIMCKDSMK----KNW-VP-SVDTISALLEGLKKNNQPCKANTIMALVQRR  390 (409)
Q Consensus       330 ~~li~~~~~~g~~~~a~~~~~~m~~----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  390 (409)
                      ..+.+.|-+.++.++|...|..-++    .|. .| ......-|..-+.+.+++++|..........
T Consensus       470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence            9999999999999999988877655    242 22 2222333457788889999988877666554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.58  E-value=5.9e-11  Score=100.25  Aligned_cols=289  Identities=13%  Similarity=0.084  Sum_probs=227.6

Q ss_pred             cCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHH
Q 015329           92 GARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQA  171 (409)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  171 (409)
                      ..|+|..|+++...-.+.+..| .-.|..-..+.-..|+.+.+-.++.+..+..-.++....-...+.....|+.+.|..
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            4699999999999877665542 233344567777899999999999999876336677778888888999999988877


Q ss_pred             HHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCChhhHHHHH
Q 015329          172 FLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV-------ITYTTLISAFYKDNRPEIGNGLW  244 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~  244 (409)
                      -+++..+..  +...........+|.+.|++.....++..|.+.|.-.|.       .+|+.+++-....+..+.-...|
T Consensus       175 ~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W  252 (400)
T COG3071         175 NVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW  252 (400)
T ss_pred             HHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence            776664432  335677889999999999999999999999999876554       35777777766666666666677


Q ss_pred             HHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC
Q 015329          245 NLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-RLM  323 (409)
Q Consensus       245 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~  323 (409)
                      +..... .+.++..-.+++.-+.++|+.++|.++.++..+.+-.|+    -...-.+.+.++.+.-.+..+.-.+. +. 
T Consensus       253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-  326 (400)
T COG3071         253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-  326 (400)
T ss_pred             HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-
Confidence            776554 355677777889999999999999999999999877655    22234456778888888877776665 33 


Q ss_pred             CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329          324 PNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP  392 (409)
Q Consensus       324 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  392 (409)
                       ++..+.+|...|.+.+.|.+|...|+..++.  .|+..+|..+..++.+.|+.++|.++.++......
T Consensus       327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~  392 (400)
T COG3071         327 -DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTR  392 (400)
T ss_pred             -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence             4477889999999999999999999987776  69999999999999999999999999988764443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.56  E-value=6.2e-11  Score=100.13  Aligned_cols=288  Identities=12%  Similarity=0.027  Sum_probs=230.8

Q ss_pred             hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 015329           56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAM  135 (409)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  135 (409)
                      ..|++.+|..+..+..+.+  ......|.....+.-+.|+.+.+..++.+..+.....+..+..+..+.....|++..|.
T Consensus        96 ~eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~  173 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR  173 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence            3699999999999987776  23344566677888899999999999999998866667777778888999999999999


Q ss_pred             HHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC-------HHHHHHHHHHHHhcCChhHHHHH
Q 015329          136 DTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD-------IFSFNIVIKAFCEMGILDKAYLV  208 (409)
Q Consensus       136 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~  208 (409)
                      .-++++.+.+ +..........++|.+.|++..+..+...+.+. +.--|       ..+|+.+++-....+..+.-...
T Consensus       174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~  251 (400)
T COG3071         174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW  251 (400)
T ss_pred             HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            9999998876 667788999999999999999999999877544 44333       34677788777777777776677


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 015329          209 MVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE  288 (409)
Q Consensus       209 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  288 (409)
                      ++..... .+-++..-..++.-+.+.|+.++|.++..+..+.+..|+.    ...-.+.+-++...-.+..++-.+....
T Consensus       252 W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~  326 (400)
T COG3071         252 WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE  326 (400)
T ss_pred             HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence            7776543 2335666677888889999999999999999988766662    2334556677777777777766554322


Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          289 PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       289 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                       ++-.+..|-..|.+.+.+.+|.+.|+...+.  .|+..+|+.+.+++.+.|+..+|.++.++.+..
T Consensus       327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         327 -DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence             4577888999999999999999999977765  789999999999999999999999999887643

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=3.3e-12  Score=114.31  Aligned_cols=280  Identities=10%  Similarity=0.056  Sum_probs=219.6

Q ss_pred             ChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCC--CChhHHHHHHHHHHhcCChHHHHH
Q 015329           59 DPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQG--RREGFIMRIMMLYGKAGMIKHAMD  136 (409)
Q Consensus        59 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~  136 (409)
                      +.++|+..|.....+.  .-+......+..+|-..+++++|+++|+.+++..+-  ...++|.+.+.-+-+    +-++.
T Consensus       334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls  407 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS  407 (638)
T ss_pred             HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence            6678999999854443  445577788899999999999999999999865432  236677777765432    22222


Q ss_pred             HHHH-hhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329          137 TFYD-MHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEMGILDKAYLVMVEMQK  214 (409)
Q Consensus       137 ~~~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  214 (409)
                      .+.+ +.+.. +-.+.+|.++.++|.-.++.+.|.+.|++...   +.| ..++|+.+..-+....++|.|...|+..+.
T Consensus       408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~  483 (638)
T KOG1126|consen  408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG  483 (638)
T ss_pred             HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence            2222 22222 56778999999999999999999999976543   455 688999999999999999999999999875


Q ss_pred             CCCCCCHHHHHH---HHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH
Q 015329          215 LGVKPDVITYTT---LISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE  291 (409)
Q Consensus       215 ~g~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~  291 (409)
                          .|...|++   +...|.+.++++.|+-.|+...+-+ +-+.+....+...+-+.|+.++|++++++......+ |+
T Consensus       484 ----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~  557 (638)
T KOG1126|consen  484 ----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP  557 (638)
T ss_pred             ----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence                45566654   5667899999999999999999875 557777788888999999999999999999877544 44


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329          292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN  356 (409)
Q Consensus       292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  356 (409)
                      ..--.-...+...++.++|+..++++.+.  .| +...|..+...|.+.|+.+.|+.-|.-+.+..
T Consensus       558 l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  558 LCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             hhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            44445566677789999999999999986  44 45668888999999999999999998887754

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.54  E-value=2.3e-11  Score=104.22  Aligned_cols=192  Identities=11%  Similarity=-0.009  Sum_probs=133.2

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 015329          197 CEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQAN  276 (409)
Q Consensus       197 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  276 (409)
                      ..+|++++|.+.|++.+...-.-....||+ .-.+-..|++++|+..|-.+..- +..+......+...|....+..+|+
T Consensus       501 f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai  578 (840)
T KOG2003|consen  501 FANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI  578 (840)
T ss_pred             eecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence            346788888888888876533222233332 23356678888888888776542 2336666777777888888888888


Q ss_pred             HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329          277 KLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN  356 (409)
Q Consensus       277 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  356 (409)
                      +++.+.... ++-|+...+.|...|-+.|+-..|.+.+-+-..- +.-|..+...|..-|....-+++++.+|++..  -
T Consensus       579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--l  654 (840)
T KOG2003|consen  579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--L  654 (840)
T ss_pred             HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--h
Confidence            887665443 2336777888888888888888888776554322 34467777777777777777888888887643  3


Q ss_pred             CCCCHHHHHHHHH-HHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          357 WVPSVDTISALLE-GLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       357 ~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      +.|+..-|..++. ++.+.|++++|.++++.+.+++|..
T Consensus       655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped  693 (840)
T KOG2003|consen  655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED  693 (840)
T ss_pred             cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence            5788888888774 4456788888888888888877654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.52  E-value=3.6e-11  Score=100.85  Aligned_cols=203  Identities=12%  Similarity=0.021  Sum_probs=158.5

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329          185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ  264 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  264 (409)
                      ....+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~  107 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            3566777888888889999999988888775432 56677778888888899999999888888764 445667777888


Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHh
Q 015329          265 HLVNKRRSWQANKLMGLMQRFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFN  343 (409)
Q Consensus       265 ~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  343 (409)
                      .+...|++++|...+++.......+ ....+..+...+...|++++|...+++..+.... +...+..+...+...|+++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence            8888999999999998887643222 3456667778888899999999999988876322 4667888888888999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329          344 LAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV  391 (409)
Q Consensus       344 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  391 (409)
                      +|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+.+..
T Consensus       187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            999999988776 35567777778888888999999999888776653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.50  E-value=6.3e-11  Score=110.46  Aligned_cols=284  Identities=12%  Similarity=0.102  Sum_probs=192.7

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc---CCCCCH------HhHHHHHHHHHccCCHHHHHHHHHhcCccCCC
Q 015329          112 GRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLY---GCKRTV------KSLNAALKVLTESRDLKAIQAFLMEVPEKFHI  182 (409)
Q Consensus       112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  182 (409)
                      .+...+.+.+...+...|++..|...|......   ...++.      .+--.+....-..++.+.|...|.++...   
T Consensus       449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---  525 (1018)
T KOG2002|consen  449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---  525 (1018)
T ss_pred             CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---
Confidence            345566666666666666666666666665443   111222      11122333444445666666666555444   


Q ss_pred             CcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCCCHhhHH
Q 015329          183 QFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKG-CFPNLATFN  260 (409)
Q Consensus       183 ~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~  260 (409)
                      .|. +..|--++......+...+|..+++...+..- .+...++.+.+.+.+...+..|..-|....+.- ..+|+.+.-
T Consensus       526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli  604 (1018)
T KOG2002|consen  526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI  604 (1018)
T ss_pred             CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence            222 22233333223334566677777777766432 355666667777777777777777666655432 224666555


Q ss_pred             HHHHHHHh------------cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 015329          261 VRIQHLVN------------KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKI  328 (409)
Q Consensus       261 ~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  328 (409)
                      .|.+.|.+            .+..++|+.+|.+.+..... |...-|.+.-.++..|++.+|..+|....+.... +..+
T Consensus       605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv  682 (1018)
T KOG2002|consen  605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDV  682 (1018)
T ss_pred             HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCce
Confidence            55555543            34567889999998887643 7888888999999999999999999999987442 4567


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHH
Q 015329          329 YQTMIHYLCQEGDFNLAYIMCKDSMKK-NWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSA  401 (409)
Q Consensus       329 ~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  401 (409)
                      |-.+..+|...|++..|+++|+...+. .-..+..+...|.+++.+.|.+.+|.+.+.......|..+...++.
T Consensus       683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~  756 (1018)
T KOG2002|consen  683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL  756 (1018)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence            889999999999999999999987665 3456788899999999999999999999999999988877665543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=3.8e-10  Score=97.08  Aligned_cols=309  Identities=10%  Similarity=0.017  Sum_probs=228.3

Q ss_pred             hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCC--CChhHHHHHHHHHHhcCCh
Q 015329           54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQG--RREGFIMRIMMLYGKAGMI  131 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~  131 (409)
                      +....+.+++++-.+.....| ++.+...-+....+.-...+++.|+.+|+++.+..+-  .+-++|..++-.  ++.+-
T Consensus       237 ~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s  313 (559)
T KOG1155|consen  237 YQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS  313 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence            334457888888888887777 6666655556666777889999999999999977331  124556555433  32221


Q ss_pred             HHHHHHHHHhh-hcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 015329          132 KHAMDTFYDMH-LYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEMGILDKAYLVM  209 (409)
Q Consensus       132 ~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~  209 (409)
                        .+..+..-. .-+ +-.+.|+..+.+-|+-.++.++|..+|+...+-   .| ....|+.+.+-|....+...|++.+
T Consensus       314 --kLs~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL---Np~~~~aWTLmGHEyvEmKNt~AAi~sY  387 (559)
T KOG1155|consen  314 --KLSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKL---NPKYLSAWTLMGHEYVEMKNTHAAIESY  387 (559)
T ss_pred             --HHHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhc---CcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence              122221111 111 455678888999999999999999999766433   33 3566999999999999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 015329          210 VEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP  289 (409)
Q Consensus       210 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p  289 (409)
                      ++..+.+.. |-..|-.|.++|.-.+.+.-|+-.|++..... +.|...|.++..+|.+.++.++|++.|+.....|- .
T Consensus       388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-t  464 (559)
T KOG1155|consen  388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-T  464 (559)
T ss_pred             HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-c
Confidence            999987654 88999999999999999999999999998863 66899999999999999999999999999988773 3


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHH
Q 015329          290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLM-P-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDT  363 (409)
Q Consensus       290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  363 (409)
                      +...+..|...|-+.++.++|...|+...+.    |.. | ......-|..-+.+.+++++|..........        
T Consensus       465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--------  536 (559)
T KOG1155|consen  465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--------  536 (559)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--------
Confidence            6788999999999999999999999887652    333 2 1222233455567788888887665543321        


Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329          364 ISALLEGLKKNNQPCKANTIMALVQRRVP  392 (409)
Q Consensus       364 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  392 (409)
                                .-..++|..+++++.+...
T Consensus       537 ----------~~e~eeak~LlReir~~~~  555 (559)
T KOG1155|consen  537 ----------ETECEEAKALLREIRKIQA  555 (559)
T ss_pred             ----------CchHHHHHHHHHHHHHhcC
Confidence                      2345677777777665443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.46  E-value=6.6e-11  Score=99.23  Aligned_cols=200  Identities=8%  Similarity=-0.054  Sum_probs=127.9

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHH
Q 015329          115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIK  194 (409)
Q Consensus       115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~  194 (409)
                      ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.+...+++.....  +.+...+..+..
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~  107 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Confidence            4455556666667777777777777665543 3345566666667777777777777665554331  223455666667


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHh
Q 015329          195 AFCEMGILDKAYLVMVEMQKLGVK-PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSW  273 (409)
Q Consensus       195 ~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~  273 (409)
                      .+...|++++|.+.|++....... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|+++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence            777777777777777777653221 233455556666777777777777777776653 334556667777777777777


Q ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329          274 QANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG  319 (409)
Q Consensus       274 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  319 (409)
                      +|...+++..+.. +.+...+..+...+...|+.++|..+.+.+..
T Consensus       187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            7777777776652 33555566666777777777777777766654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.43  E-value=1.8e-11  Score=112.89  Aligned_cols=253  Identities=11%  Similarity=0.099  Sum_probs=179.9

Q ss_pred             HHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 015329           65 QLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLY  144 (409)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  144 (409)
                      +++..+...| +.|+..||..+|..|+..|+++.|- +|.-|.....+....+++.++.+....++.+.+.         
T Consensus        11 nfla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------   79 (1088)
T KOG4318|consen   11 NFLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------   79 (1088)
T ss_pred             hHHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence            3445555566 8899999999999999999999988 9999987777888999999999999999977766         


Q ss_pred             CCCCCHHhHHHHHHHHHccCCHHH---HHHHHHhcCc---cCC-----------------CCcCHHHHHHHHHHHHhcCC
Q 015329          145 GCKRTVKSLNAALKVLTESRDLKA---IQAFLMEVPE---KFH-----------------IQFDIFSFNIVIKAFCEMGI  201 (409)
Q Consensus       145 ~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~---~~~-----------------~~~~~~~~~~ll~~~~~~g~  201 (409)
                        .|...||..|+.+|...||...   +++.+..+..   ..|                 .-||..   ..+....-.|.
T Consensus        80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~egl  154 (1088)
T KOG4318|consen   80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGL  154 (1088)
T ss_pred             --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHH
Confidence              6888999999999999999844   3332211110   111                 112221   12223334455


Q ss_pred             hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 015329          202 LDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGL  281 (409)
Q Consensus       202 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  281 (409)
                      |+.+++++..+.......   ++...++-+..  ......++.+......-.|++.+|..++.+-...|+.+.|..++.+
T Consensus       155 waqllkll~~~Pvsa~~~---p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e  229 (1088)
T KOG4318|consen  155 WAQLLKLLAKVPVSAWNA---PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE  229 (1088)
T ss_pred             HHHHHHHHhhCCcccccc---hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence            555555555443321111   11112333222  2233344444333322258999999999999999999999999999


Q ss_pred             HHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 015329          282 MQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGD  341 (409)
Q Consensus       282 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  341 (409)
                      |.+.|+..+.+-|..|+.+   .++...+..+++.|.+.|+.|+..|+...+-.+...|.
T Consensus       230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            9999999898888888876   78888899999999999999999999988888877655

>PF13041 PPR_2: PPR repeat family

Probab=99.43  E-value=4.2e-13  Score=81.84  Aligned_cols=49  Identities=35%  Similarity=0.713  Sum_probs=31.2

Q ss_pred             cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329          184 FDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFY  232 (409)
Q Consensus       184 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~  232 (409)
                      ||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            5566666666666666666666666666666666666666666666654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.43  E-value=3.9e-10  Score=96.84  Aligned_cols=275  Identities=12%  Similarity=0.041  Sum_probs=199.0

Q ss_pred             HhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHH--hcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHH
Q 015329           90 LAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYG--KAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLK  167 (409)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~  167 (409)
                      +.+.|+++.|.++++-+.+..........+.|-..+.  --.++..|.+.-+.....+ +-+......-.+.....|+++
T Consensus       429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d  507 (840)
T KOG2003|consen  429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD  507 (840)
T ss_pred             HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence            4577788888888777765543333333333322222  2335666666655554332 223333222233344578899


Q ss_pred             HHHHHHHhcCccCCCCcCHHHHHHH---HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHH
Q 015329          168 AIQAFLMEVPEKFHIQFDIFSFNIV---IKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLW  244 (409)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~  244 (409)
                      +|..++++....     |..+-.+|   .-.+-..|++++|++.|-++...= .-+..+.-.+.+.|-...+..+|++++
T Consensus       508 ka~~~ykeal~n-----dasc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~  581 (840)
T KOG2003|consen  508 KAAEFYKEALNN-----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELL  581 (840)
T ss_pred             HHHHHHHHHHcC-----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            999999877554     43332222   235778899999999998876532 236777778888999999999999999


Q ss_pred             HHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015329          245 NLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP  324 (409)
Q Consensus       245 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  324 (409)
                      .+.... ++.|+...+-+...|-+.|+-.+|+..+-+-... ++.+..+...|...|....-+++++.+|++..-  +.|
T Consensus       582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp  657 (840)
T KOG2003|consen  582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP  657 (840)
T ss_pred             HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence            877664 5678899999999999999999998876654433 244788889999999999999999999998653  589


Q ss_pred             CHHHHHHHHHHHH-HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329          325 NRKIYQTMIHYLC-QEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ  376 (409)
Q Consensus       325 ~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~  376 (409)
                      +..-|..||..|. +.|++.+|+.++++..+ .++-|..++..|++.+...|.
T Consensus       658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             cHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence            9999999987775 58999999999999766 468899999999999988885

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.42  E-value=3.4e-09  Score=98.48  Aligned_cols=335  Identities=14%  Similarity=0.113  Sum_probs=251.4

Q ss_pred             HHHHh-hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHh
Q 015329           49 PALVK-LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGK  127 (409)
Q Consensus        49 ~~l~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  127 (409)
                      ..|.. ....|+.++++..+-.+...+  +.|...|..+.....+.|.+++|.-.|....+..+. +-..+-.=+..|-+
T Consensus       177 ~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~  253 (895)
T KOG2076|consen  177 YTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQK  253 (895)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHH
Confidence            33443 445689999999888776655  556688999999999999999999999999987655 34444446778999


Q ss_pred             cCChHHHHHHHHHhhhcCCCCCHHhHHH----HHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChh
Q 015329          128 AGMIKHAMDTFYDMHLYGCKRTVKSLNA----ALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILD  203 (409)
Q Consensus       128 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  203 (409)
                      .|+...|.+.|.++....-+.|..-+..    .+..+...++.+.|.+.++......+-..+...+++++..|.+...++
T Consensus       254 ~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d  333 (895)
T KOG2076|consen  254 TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSD  333 (895)
T ss_pred             hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHH
Confidence            9999999999999987753233333333    345566677778888888766664444456667889999999999999


Q ss_pred             HHHHHHHHHHhCCCCC---------------------------CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCC
Q 015329          204 KAYLVMVEMQKLGVKP---------------------------DVITYTTLISAFYKDNRPEIGNGLWNLMVCKG--CFP  254 (409)
Q Consensus       204 ~a~~~~~~m~~~g~~~---------------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~  254 (409)
                      .|......+......+                           +..++ -++-++.+.+..+....+...+.+.+  ..-
T Consensus       334 ~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d  412 (895)
T KOG2076|consen  334 KALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSD  412 (895)
T ss_pred             HhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhh
Confidence            9999888887622222                           22221 23334455666666666676676666  334


Q ss_pred             CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329          255 NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH  334 (409)
Q Consensus       255 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  334 (409)
                      +...|.-+..+|...|++..|+.+|..+......-+...|-.+..+|-..|.+++|.+.|+..+..... +...--.|..
T Consensus       413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Las  491 (895)
T KOG2076|consen  413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLAS  491 (895)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHH
Confidence            667888899999999999999999999988755557889999999999999999999999999876322 4455567778


Q ss_pred             HHHHcCCHhHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015329          335 YLCQEGDFNLAYIMCKDSMK--------KNWVPSVDTISALLEGLKKNNQPCKANTIMALVQ  388 (409)
Q Consensus       335 ~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  388 (409)
                      .+.+.|+.++|.+.+..+..        .++.|+..........+.+.|+.++-..+...|.
T Consensus       492 l~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv  553 (895)
T KOG2076|consen  492 LYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV  553 (895)
T ss_pred             HHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            88899999999999988542        3466777777778888999999887666655554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.42  E-value=2.5e-09  Score=100.09  Aligned_cols=327  Identities=10%  Similarity=-0.011  Sum_probs=234.1

Q ss_pred             hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 015329           56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAM  135 (409)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  135 (409)
                      ...+.+.|...|....+..  +++...+-.-.......|++-.|..+|..+....+...++....+..++.+.|+.+.|+
T Consensus       142 ~~~~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~  219 (1018)
T KOG2002|consen  142 GDKSMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKAL  219 (1018)
T ss_pred             CCccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHH
Confidence            3444799999999998886  34444333333444567899999999999887766656666656667888999999999


Q ss_pred             HHHHHhhhcCCCCCHHhHHHHHHHHHccCCH---HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015329          136 DTFYDMHLYGCKRTVKSLNAALKVLTESRDL---KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEM  212 (409)
Q Consensus       136 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m  212 (409)
                      ..|.+..+.+ +-+..++..|...-....+.   ..+...+...-...+-  ++...+.|.+.|.-.|++..+..+...+
T Consensus       220 ~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~--nP~~l~~LAn~fyfK~dy~~v~~la~~a  296 (1018)
T KOG2002|consen  220 LAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE--NPVALNHLANHFYFKKDYERVWHLAEHA  296 (1018)
T ss_pred             HHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence            9999998764 22333333333333333333   4455554433333333  5667888999999999999999999998


Q ss_pred             HhCCCC--CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC
Q 015329          213 QKLGVK--PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD  290 (409)
Q Consensus       213 ~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~  290 (409)
                      ......  .-...|-.+..+|...|++++|...|.+..+..-..-+..+--+.+.|.+.|+.+.+...|+.+.+... -+
T Consensus       297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~  375 (1018)
T KOG2002|consen  297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NN  375 (1018)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-ch
Confidence            875321  123457788999999999999999998887754222234455678999999999999999999988742 25


Q ss_pred             HHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH----HhCCCCCCHH
Q 015329          291 EVTYNLVIKGFCRSG----HLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS----MKKNWVPSVD  362 (409)
Q Consensus       291 ~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~  362 (409)
                      ..+..+|...|+..+    ..++|..++.+..+.- .-|...|-.+...+-.. +...++.++...    ...+-.+.++
T Consensus       376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E  453 (1018)
T KOG2002|consen  376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPE  453 (1018)
T ss_pred             HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHH
Confidence            667777777777665    4567777777766653 23677777777776544 443336665544    4456668889


Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329          363 TISALLEGLKKNNQPCKANTIMALVQRR  390 (409)
Q Consensus       363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  390 (409)
                      ..+.+.......|+++.|...|+.....
T Consensus       454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~  481 (1018)
T KOG2002|consen  454 VLNNVASLHFRLGNIEKALEHFKSALGK  481 (1018)
T ss_pred             HHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence            9999999999999999999999998766

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.42  E-value=1.2e-09  Score=100.00  Aligned_cols=290  Identities=12%  Similarity=0.119  Sum_probs=207.7

Q ss_pred             HhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhc---
Q 015329           52 VKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKA---  128 (409)
Q Consensus        52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  128 (409)
                      ..+...|++++|++.++.-...  +......+......+.+.|+.++|..+|..+...++. +...|..+..+..-.   
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccc
Confidence            4466789999999999886544  3334455667789999999999999999999988664 667777777766333   


Q ss_pred             --CChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCH-HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHH
Q 015329          129 --GMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDL-KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKA  205 (409)
Q Consensus       129 --~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a  205 (409)
                        .+.+...++|+++...  -|.......+.-.+.....+ ..+..++.....+ |+++   +|+.+-..|....+.+-.
T Consensus        89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPs---lF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPS---LFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCch---HHHHHHHHHcChhHHHHH
Confidence              3578888899988665  35444443333333332333 5566666555444 6543   566666667655555555


Q ss_pred             HHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHh
Q 015329          206 YLVMVEMQKL----G----------VKPDVI--TYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN-LATFNVRIQHLVN  268 (409)
Q Consensus       206 ~~~~~~m~~~----g----------~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~  268 (409)
                      .+++......    |          -.|+..  ++..+...|-..|++++|+++++..++.  .|+ +..|..-...+-.
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh  240 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH  240 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence            6666655432    1          123443  4455667788899999999999999987  454 6778888899999


Q ss_pred             cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------HHHHHHHHHcC
Q 015329          269 KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIY--------QTMIHYLCQEG  340 (409)
Q Consensus       269 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--------~~li~~~~~~g  340 (409)
                      .|++.+|.+.++...+.... |...-+..+..+.++|++++|.+++....+.+..|-...+        .....+|.+.|
T Consensus       241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~  319 (517)
T PF12569_consen  241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG  319 (517)
T ss_pred             CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999988754 8888888899999999999999999998877654422221        33467888999


Q ss_pred             CHhHHHHHHHHHH
Q 015329          341 DFNLAYIMCKDSM  353 (409)
Q Consensus       341 ~~~~a~~~~~~m~  353 (409)
                      ++..|++.|....
T Consensus       320 ~~~~ALk~~~~v~  332 (517)
T PF12569_consen  320 DYGLALKRFHAVL  332 (517)
T ss_pred             hHHHHHHHHHHHH
Confidence            9998887666544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13041 PPR_2: PPR repeat family

Probab=99.41  E-value=7e-13  Score=80.86  Aligned_cols=42  Identities=36%  Similarity=0.517  Sum_probs=15.0

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 015329          258 TFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIK  299 (409)
Q Consensus       258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~  299 (409)
                      +||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|+
T Consensus         5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~   46 (50)
T PF13041_consen    5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN   46 (50)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            333333333333333333333333333333333333333333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.41  E-value=1.4e-08  Score=91.43  Aligned_cols=336  Identities=11%  Similarity=0.021  Sum_probs=234.2

Q ss_pred             HHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhc
Q 015329           49 PALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKA  128 (409)
Q Consensus        49 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  128 (409)
                      ..-..+.+.+..+-|..+|....+-.  +.+...|......=-..|..++...+|+++...-+ ..+..|.-....+-..
T Consensus       521 ~da~~~~k~~~~~carAVya~alqvf--p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~a  597 (913)
T KOG0495|consen  521 DDAQSCEKRPAIECARAVYAHALQVF--PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKA  597 (913)
T ss_pred             hhHHHHHhcchHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhc
Confidence            33344556666777777777776553  44555666666666667777777777777765533 2555665556667777


Q ss_pred             CChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 015329          129 GMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLV  208 (409)
Q Consensus       129 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~  208 (409)
                      |++..|..++....+.. +-+...|-..+..-....+++.|..+|.....   ..|+...|.--++.---.++.++|.++
T Consensus       598 gdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rl  673 (913)
T KOG0495|consen  598 GDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRL  673 (913)
T ss_pred             CCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence            88888888888777664 33566777777777888888888888865433   455666666666666667778888888


Q ss_pred             HHHHHhCCCCCC-HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 015329          209 MVEMQKLGVKPD-VITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGI  287 (409)
Q Consensus       209 ~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  287 (409)
                      +++..+.  -|+ ...|-.+...+-+.++.+.|...|..-.+. ++...-.|-.+...=-+.|.+..|..+++...-.+.
T Consensus       674 lEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP  750 (913)
T KOG0495|consen  674 LEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP  750 (913)
T ss_pred             HHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence            8777764  333 345666666777777777777777665543 334445566666666667778888888888776654


Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-------------------------CCCCHHHHHHHHHHHHH
Q 015329          288 EPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----R-------------------------LMPNRKIYQTMIHYLCQ  338 (409)
Q Consensus       288 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-------------------------~~p~~~~~~~li~~~~~  338 (409)
                      + +...|-..|+.-.+.|+.+.|..++.+.++.    |                         +.-|......+...+..
T Consensus       751 k-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~  829 (913)
T KOG0495|consen  751 K-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS  829 (913)
T ss_pred             C-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH
Confidence            3 6777777888888888888777766655443    1                         23356666677777788


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329          339 EGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSS  396 (409)
Q Consensus       339 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  396 (409)
                      ..++++|.+.|.+.++.+ +-+..+|..+...+.+.|.-+.-.++++......|....
T Consensus       830 e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~  886 (913)
T KOG0495|consen  830 EKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGE  886 (913)
T ss_pred             HHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Confidence            888999999999988876 556678888889999999988889999988888777654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.40  E-value=8.1e-11  Score=96.78  Aligned_cols=237  Identities=12%  Similarity=0.085  Sum_probs=176.7

Q ss_pred             HHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHH
Q 015329          154 NAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYT-TLISAFY  232 (409)
Q Consensus       154 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~~~  232 (409)
                      +.+.++|.+.|-+..|++.++...+.   .|-+.||-.|-+.|.+..++..|+.+|.+-.+.  .|-.+||. -+...+-
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence            56778888888888888888666555   456667878888888888888888888887765  34445543 3445666


Q ss_pred             HcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 015329          233 KDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKK  312 (409)
Q Consensus       233 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  312 (409)
                      ..++.++|.++++...+.. +.++....++...|.-.++++-|+.+|+++.+.|+. +...|+.+.-+|...+++|-++.
T Consensus       302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence            6788888888888887753 446666667777777788888888888888888876 77788888888888888888888


Q ss_pred             HHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329          313 VYSAMLGRRLMPN--RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRR  390 (409)
Q Consensus       313 ~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  390 (409)
                      -|.+....--.|+  ..+|-.+-...+..|++..|.+.|+-.+..+ ......++.|...-.+.|++++|..++......
T Consensus       380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            8887766533333  3456667777777888888888888776654 456678888888888888888888888888887


Q ss_pred             CCCCCchh
Q 015329          391 VPHFSSNQ  398 (409)
Q Consensus       391 ~~~~~~~~  398 (409)
                      .|..-...
T Consensus       459 ~P~m~E~~  466 (478)
T KOG1129|consen  459 MPDMAEVT  466 (478)
T ss_pred             Cccccccc
Confidence            77654443

>PRK12370 invasion protein regulator; Provisional

Probab=99.40  E-value=3.4e-10  Score=106.79  Aligned_cols=252  Identities=7%  Similarity=-0.029  Sum_probs=155.7

Q ss_pred             CChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHH---------ccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhc
Q 015329          129 GMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLT---------ESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEM  199 (409)
Q Consensus       129 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  199 (409)
                      +.+++|.+.|++..+.. +-+...|..+..++.         ..++.++|...+++..+..  +-+...+..+...+...
T Consensus       275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~  351 (553)
T PRK12370        275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence            45778888888877653 223445555544433         2233577777776654432  22456677777778888


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 015329          200 GILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLM  279 (409)
Q Consensus       200 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  279 (409)
                      |++++|...|++..+.+.. +...+..+...+...|++++|...+++..+.+ +.+...+..++..+...|++++|...+
T Consensus       352 g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~  429 (553)
T PRK12370        352 SEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLG  429 (553)
T ss_pred             cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence            8888888888888876533 56667777788888888888888888887763 222223333444566678888888888


Q ss_pred             HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-C
Q 015329          280 GLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN-RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN-W  357 (409)
Q Consensus       280 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~  357 (409)
                      +++.+...+-+...+..+..++...|+.++|...+.++...  .|+ ....+.+...|...|  ++|...++.+.+.. -
T Consensus       430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~  505 (553)
T PRK12370        430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR  505 (553)
T ss_pred             HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence            88766532223445666777777888888888888876654  333 333445555666666  46666666655431 1


Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329          358 VPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP  392 (409)
Q Consensus       358 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  392 (409)
                      .+....+  +-..+.-.|+.+.+..+ +++.+.+.
T Consensus       506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~  537 (553)
T PRK12370        506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN  537 (553)
T ss_pred             hhcCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence            1221222  33344455666666655 66665543

>PRK12370 invasion protein regulator; Provisional

Probab=99.39  E-value=4.4e-10  Score=106.04  Aligned_cols=233  Identities=11%  Similarity=0.003  Sum_probs=158.7

Q ss_pred             CCCHHhHHHHHHHHH-----ccCCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHh---------cCChhHHHHHHHH
Q 015329          147 KRTVKSLNAALKVLT-----ESRDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCE---------MGILDKAYLVMVE  211 (409)
Q Consensus       147 ~~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~  211 (409)
                      ..+...|...+++..     ..++.+.|..++++..+.   .|+ ...|..+..+|..         .+++++|...+++
T Consensus       253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~  329 (553)
T PRK12370        253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK  329 (553)
T ss_pred             CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence            345555555555532     124468888888766544   343 4455555554432         2447889999999


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH
Q 015329          212 MQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE  291 (409)
Q Consensus       212 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~  291 (409)
                      ..+.+.. +...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +.
T Consensus       330 Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~  406 (553)
T PRK12370        330 ATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA  406 (553)
T ss_pred             HHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence            8887544 67778888888888899999999999988874 445667788888888999999999999998877433 22


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 015329          292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVD-TISALLEG  370 (409)
Q Consensus       292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~  370 (409)
                      ..+..+...+...|++++|...+++..+....-+...+..+..++...|++++|...+.++...  .|+.. ..+.+...
T Consensus       407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~  484 (553)
T PRK12370        407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAE  484 (553)
T ss_pred             hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHH
Confidence            2333344456667889999999888776532224455677777888899999999998886554  34433 34444456


Q ss_pred             HHhCCChHHHHHHHHHHHh
Q 015329          371 LKKNNQPCKANTIMALVQR  389 (409)
Q Consensus       371 ~~~~g~~~~a~~~~~~~~~  389 (409)
                      |...|  +.|...++.+.+
T Consensus       485 ~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        485 YCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HhccH--HHHHHHHHHHHH
Confidence            66666  467666666554

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.37  E-value=4.4e-08  Score=88.26  Aligned_cols=332  Identities=8%  Similarity=0.020  Sum_probs=167.3

Q ss_pred             HHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHH----hhhCCCCCChhHHHHHHHHH
Q 015329           50 ALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEH----QKSLPQGRREGFIMRIMMLY  125 (409)
Q Consensus        50 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~  125 (409)
                      +..++++...++.|-.+++.+.+.  ++.+...|.+....=-..|+.+...++++.    +...|...+..-|..=...|
T Consensus       412 LwlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~  489 (913)
T KOG0495|consen  412 LWLALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC  489 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence            334455555666666666666554  355666666655555566666666666554    23445555555555445555


Q ss_pred             HhcCChHHHHHHHHHhhhcCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChh
Q 015329          126 GKAGMIKHAMDTFYDMHLYGCKR--TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILD  203 (409)
Q Consensus       126 ~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  203 (409)
                      -..|..-.+..+....+..|+.-  ...||+.-.+.|.+.+.++-+..+|.....-+  +-+...|......=-..|..+
T Consensus       490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--p~k~slWlra~~~ek~hgt~E  567 (913)
T KOG0495|consen  490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--PCKKSLWLRAAMFEKSHGTRE  567 (913)
T ss_pred             hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcCcHH
Confidence            55555555555555555544432  12355555555555555555555553332221  112333444443334445555


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 015329          204 KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQ  283 (409)
Q Consensus       204 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  283 (409)
                      ....+|++....-.+ ....|-.....+-..|++..|..++.+..+.. +.+...|-..+..-....+++.|..+|.+..
T Consensus       568 sl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar  645 (913)
T KOG0495|consen  568 SLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKAR  645 (913)
T ss_pred             HHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence            555555555544222 33444444444555556666655555555543 2244455555555555555555555555554


Q ss_pred             HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------------------------------HHH
Q 015329          284 RFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN-----------------------------------RKI  328 (409)
Q Consensus       284 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----------------------------------~~~  328 (409)
                      ..  .|+...|.--+..--..++.++|.+++++.++.  .|+                                   ...
T Consensus       646 ~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL  721 (913)
T KOG0495|consen  646 SI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL  721 (913)
T ss_pred             cc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH
Confidence            43  334444444444444445555555555544433  222                                   223


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329          329 YQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP  392 (409)
Q Consensus       329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  392 (409)
                      |-.+...=-+.|++-.|..++++..-++ +-+...|-..|++-.+.|+.+.|..++.++.+..|
T Consensus       722 WllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp  784 (913)
T KOG0495|consen  722 WLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECP  784 (913)
T ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3333333344455555555555544443 34455555555555566666666555555555443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.36  E-value=3.5e-09  Score=96.92  Aligned_cols=294  Identities=15%  Similarity=0.073  Sum_probs=206.9

Q ss_pred             HHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhH-HHHHHHHHcc--
Q 015329           87 VSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSL-NAALKVLTES--  163 (409)
Q Consensus        87 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~--  163 (409)
                      ...+...|++++|++.++.-... ......+.......+.+.|+.++|..+|..+.+.+  |+...| ..+..+..-.  
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence            35567889999999999876544 22246667778899999999999999999999986  555555 4454544222  


Q ss_pred             ---CCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhh
Q 015329          164 ---RDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILD-KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEI  239 (409)
Q Consensus       164 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~  239 (409)
                         .+.+....+++++....   |.......+.-.+.....+. .+...+..+...|++   .+|+.|-..|....+.+-
T Consensus        88 ~~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~  161 (517)
T PF12569_consen   88 LSDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI  161 (517)
T ss_pred             cccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence               24578888887775553   33323222222222222333 455667777788865   456666666665555555


Q ss_pred             HHHHHHHHHhc----C----------CCCCH--hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC-HHHHHHHHHHHH
Q 015329          240 GNGLWNLMVCK----G----------CFPNL--ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD-EVTYNLVIKGFC  302 (409)
Q Consensus       240 a~~~~~~m~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~  302 (409)
                      ...++..+...    +          -.|+.  .++.-+.+.|...|++++|+.++++..+.  .|+ +..|..-.+.+-
T Consensus       162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK  239 (517)
T PF12569_consen  162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK  239 (517)
T ss_pred             HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence            55555555432    1          12444  34466678888999999999999999887  454 677888889999


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHH------H--HHHHHHHHhC
Q 015329          303 RSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDT------I--SALLEGLKKN  374 (409)
Q Consensus       303 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~------~--~~l~~~~~~~  374 (409)
                      +.|++++|.+.++..+..+.. |..+=+..+..+.+.|++++|.+++....+.+..|....      |  .-...+|.+.
T Consensus       240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~  318 (517)
T PF12569_consen  240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ  318 (517)
T ss_pred             HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988665 777778888999999999999999998877664333221      1  2234789999


Q ss_pred             CChHHHHHHHHHHHhcCC
Q 015329          375 NQPCKANTIMALVQRRVP  392 (409)
Q Consensus       375 g~~~~a~~~~~~~~~~~~  392 (409)
                      |++..|++.+..+.+...
T Consensus       319 ~~~~~ALk~~~~v~k~f~  336 (517)
T PF12569_consen  319 GDYGLALKRFHAVLKHFD  336 (517)
T ss_pred             hhHHHHHHHHHHHHHHHH
Confidence            999999888887765543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=4.8e-09  Score=91.06  Aligned_cols=292  Identities=9%  Similarity=-0.009  Sum_probs=146.8

Q ss_pred             hhhcCChHHHHHHHHHhhcCCCCCCc-cchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChH
Q 015329           54 LKAERDPEKLFQLFKANAHNRIVIEN-KYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIK  132 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  132 (409)
                      +-+++.+++|++++.+.+...   || +.-|....-+|...|+++++.+--......++.. ...+..=.+++-..|+++
T Consensus       125 ~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y-~KAl~RRA~A~E~lg~~~  200 (606)
T KOG0547|consen  125 FFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY-VKALLRRASAHEQLGKFD  200 (606)
T ss_pred             hhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHhhccHH
Confidence            557789999999999999876   77 7778888999999999999888877776554321 122222334444455555


Q ss_pred             HHHH----------------------HHHHh---------hhcC--CCCCHHhHHHHHHHHHc-----------------
Q 015329          133 HAMD----------------------TFYDM---------HLYG--CKRTVKSLNAALKVLTE-----------------  162 (409)
Q Consensus       133 ~a~~----------------------~~~~m---------~~~~--~~~~~~~~~~ll~~~~~-----------------  162 (409)
                      +|+.                      ++++.         .+.+  +-|+.....+....+..                 
T Consensus       201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l  280 (606)
T KOG0547|consen  201 EALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAAL  280 (606)
T ss_pred             HHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhH
Confidence            4442                      22211         1011  22333333333332210                 


Q ss_pred             --------cC---CHHHHHHHHHhcCccCCCCc--C---------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 015329          163 --------SR---DLKAIQAFLMEVPEKFHIQF--D---------IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD  220 (409)
Q Consensus       163 --------~~---~~~~a~~~~~~~~~~~~~~~--~---------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~  220 (409)
                              .+   .+..+...+.+-....-..+  +         ..+.....-.+.-.|+.-.|.+-|+..++....++
T Consensus       281 ~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~  360 (606)
T KOG0547|consen  281 AEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN  360 (606)
T ss_pred             HHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc
Confidence                    00   11111111111100000011  1         22222222334445666666666666666543322


Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 015329          221 VITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG  300 (409)
Q Consensus       221 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  300 (409)
                       ..|--+..+|....+.++....|+...+.+ +-|+.+|..-.+.+.-.+++++|..=|++....... +...|--+..+
T Consensus       361 -~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a  437 (606)
T KOG0547|consen  361 -SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCA  437 (606)
T ss_pred             -hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHH
Confidence             224445555666666666666666665543 334455555555555555555555555555444221 33344444444


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 015329          301 FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSM  353 (409)
Q Consensus       301 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  353 (409)
                      ..+.+.++++...|++.++. ++--+..|+.....+...++++.|.+.|+..+
T Consensus       438 ~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai  489 (606)
T KOG0547|consen  438 LYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI  489 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence            44455555555555555443 22233445555555555555555555555443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.33  E-value=3.8e-10  Score=92.91  Aligned_cols=230  Identities=13%  Similarity=0.072  Sum_probs=193.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHh
Q 015329          119 MRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCE  198 (409)
Q Consensus       119 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~  198 (409)
                      ..+..+|.+.|.+.+|.+.|+..++.  .|-+.||-.|-+.|.+..+++.|..++.+-.+.+  +-|+....-+.+.+-.
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHH
Confidence            36889999999999999999998775  6778899999999999999999999997766553  2344445567788889


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 015329          199 MGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKL  278 (409)
Q Consensus       199 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  278 (409)
                      .++.++|.++|+...+.... ++.....+...|.-.++++-|+..++.+.+.|+ -+...|+.+.-+|.-.++++-++..
T Consensus       303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence            99999999999999986533 677777888888999999999999999999995 5788899999999999999999999


Q ss_pred             HHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          279 MGLMQRFGIEPD--EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       279 ~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      |.+....-..|+  ...|-.+-......||+..|.+.|+-....+.. +...+|.|.-.-.+.|++++|..++......
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            999877654454  346767777778899999999999998877544 6788999988889999999999999976654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=5.3e-08  Score=84.51  Aligned_cols=321  Identities=10%  Similarity=0.039  Sum_probs=199.3

Q ss_pred             cCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 015329           57 ERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMD  136 (409)
Q Consensus        57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  136 (409)
                      +++.+.|..+|+++...+  ..+...|...+.+=.+...+..|..+++.....-+..+ .+|-..+..=-..|++..|.+
T Consensus        86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRq  162 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQ  162 (677)
T ss_pred             HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHH
Confidence            456777999999998776  45666677788888899999999999998887644433 344445555556899999999


Q ss_pred             HHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 015329          137 TFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLG  216 (409)
Q Consensus       137 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g  216 (409)
                      +|.+..+-  .|+...|++.++.=.+...++.|..+++...-   +.|++.+|--..+.=-+.|.+..+..+|+...+.=
T Consensus       163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~  237 (677)
T KOG1915|consen  163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL  237 (677)
T ss_pred             HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            99998765  79999999999999999999999999976643   36888888888888888898888888888776521


Q ss_pred             CCCCHHHHHHHHHHHH----HcCChhhHHHHHHHHHhc------------------------C-----------------
Q 015329          217 VKPDVITYTTLISAFY----KDNRPEIGNGLWNLMVCK------------------------G-----------------  251 (409)
Q Consensus       217 ~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~m~~~------------------------~-----------------  251 (409)
                        .|...-..+..+++    +++.++.|.-+|.-..+.                        |                 
T Consensus       238 --~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v  315 (677)
T KOG1915|consen  238 --GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV  315 (677)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence              12222222222222    233333333333222111                        0                 


Q ss_pred             --CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc----------------------------------------
Q 015329          252 --CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP----------------------------------------  289 (409)
Q Consensus       252 --~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p----------------------------------------  289 (409)
                        .+-|-.+|--.+..-...|+.+...++|+.....-.+.                                        
T Consensus       316 ~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l  395 (677)
T KOG1915|consen  316 SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL  395 (677)
T ss_pred             HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence              12244455555555555666666666666655432111                                        


Q ss_pred             ---CHHHHHHHHHH----HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH
Q 015329          290 ---DEVTYNLVIKG----FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVD  362 (409)
Q Consensus       290 ---~~~~~~~li~~----~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  362 (409)
                         ...||.-+=-.    -.++.++..|.+++...+  |..|-..+|...|..-.+.+++|....++++.++-+ +-+..
T Consensus       396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~  472 (677)
T KOG1915|consen  396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCY  472 (677)
T ss_pred             cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhH
Confidence               11111111111    123344455555554443  445566666666666666666666666666666554 44555


Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329          363 TISALLEGLKKNNQPCKANTIMALVQRR  390 (409)
Q Consensus       363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  390 (409)
                      +|......-...|+.+.|..+|+.+...
T Consensus       473 ~W~kyaElE~~LgdtdRaRaifelAi~q  500 (677)
T KOG1915|consen  473 AWSKYAELETSLGDTDRARAIFELAISQ  500 (677)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence            6666655556666666666666655544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.31  E-value=4.1e-09  Score=91.22  Aligned_cols=95  Identities=9%  Similarity=-0.120  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329          189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN  268 (409)
Q Consensus       189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  268 (409)
                      |..+...|...|++++|...|++..+.... +...|+.+...+...|++++|...|+...+.. +-+..+|..+..++..
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~  144 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY  144 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            444445555555555555555555554322 34555555555555555555555555555432 2233444445555555


Q ss_pred             cCCHhHHHHHHHHHHHc
Q 015329          269 KRRSWQANKLMGLMQRF  285 (409)
Q Consensus       269 ~~~~~~a~~~~~~~~~~  285 (409)
                      .|++++|.+.|+...+.
T Consensus       145 ~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        145 GGRYELAQDDLLAFYQD  161 (296)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            55555555555555544

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.30  E-value=3.6e-10  Score=104.52  Aligned_cols=251  Identities=14%  Similarity=0.048  Sum_probs=175.4

Q ss_pred             HHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccC
Q 015329          101 HLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKF  180 (409)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  180 (409)
                      .++-.+...|..|+..+|.++|.-|+..|+++.|- +|.-|.-...+.+...|+.++.+....++.+.+.          
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            34556777888899999999999999999999999 9999988888888899999999998888776554          


Q ss_pred             CCCcCHHHHHHHHHHHHhcCChhH---HHHHHHHHH----hCCCCCCHHHHHHHHHHH--------------HHcCChhh
Q 015329          181 HIQFDIFSFNIVIKAFCEMGILDK---AYLVMVEMQ----KLGVKPDVITYTTLISAF--------------YKDNRPEI  239 (409)
Q Consensus       181 ~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~m~----~~g~~~~~~~~~~ll~~~--------------~~~~~~~~  239 (409)
                        .|...+|..|..+|...||+..   +.+.+....    ..|+......+-..+.++              .-.|.++.
T Consensus        80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq  157 (1088)
T KOG4318|consen   80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ  157 (1088)
T ss_pred             --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence              5678899999999999999765   222122111    233321111111111111              11222333


Q ss_pred             HHHHHHHHHhcCCCCCHhhHH---HHHHHHHhcCC-HhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015329          240 GNGLWNLMVCKGCFPNLATFN---VRIQHLVNKRR-SWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYS  315 (409)
Q Consensus       240 a~~~~~~m~~~~~~~~~~~~~---~ll~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  315 (409)
                      +++++..+      |...-++   .+++-+..... +++...+-+...+   .|+..+|.+++.+-...|+++.|..++.
T Consensus       158 llkll~~~------Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~  228 (1088)
T KOG4318|consen  158 LLKLLAKV------PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLY  228 (1088)
T ss_pred             HHHHHhhC------CcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHH
Confidence            33333222      2221111   12443333322 2222222222222   5899999999999999999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329          316 AMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ  376 (409)
Q Consensus       316 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~  376 (409)
                      +|.+.|+..+..-|..++-+   .++..-+..+++-|.+.|+.|+..|+...+..+.++|.
T Consensus       229 emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  229 EMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             HHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            99999999988888888766   78888889999999999999999999999988888666

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=2.4e-08  Score=88.37  Aligned_cols=273  Identities=8%  Similarity=-0.069  Sum_probs=207.9

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHH
Q 015329          115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIK  194 (409)
Q Consensus       115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~  194 (409)
                      ..+...-..-+...+++++..++++...+.. ++....+..-|.++...|+......+-.++.+..  +-.+.+|-++.-
T Consensus       244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~  320 (611)
T KOG1173|consen  244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGC  320 (611)
T ss_pred             HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHH
Confidence            3444455566778999999999999998876 6777778777888999998866666655665542  335678999998


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhH
Q 015329          195 AFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQ  274 (409)
Q Consensus       195 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~  274 (409)
                      .|...|+..+|.+.|.+....+.. =...|-....+|+-.|..++|+..+...-+. ++-..--+--+..-|.+.++.+.
T Consensus       321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL  398 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL  398 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence            899999999999999998764322 2457888889999999999999988776653 11111112224446778899999


Q ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC----CCCHHHHHHHHHHHHHcCCHhHHHHH
Q 015329          275 ANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR--RL----MPNRKIYQTMIHYLCQEGDFNLAYIM  348 (409)
Q Consensus       275 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~----~p~~~~~~~li~~~~~~g~~~~a~~~  348 (409)
                      |.++|.+...... -|+..++-+.-.....+.+.+|..+|+.....  .+    ..-..+++.|..+|.+.+.+++|+..
T Consensus       399 Ae~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~  477 (611)
T KOG1173|consen  399 AEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY  477 (611)
T ss_pred             HHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence            9999988876532 26777777777777788999999999887632  11    11345678888999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          349 CKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       349 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      ++..+... +.+..++..+.-.|...|+++.|.+.|.+.....|..
T Consensus       478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            99888764 6788899999999999999999999999988877665

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.20  E-value=1.3e-08  Score=92.18  Aligned_cols=238  Identities=12%  Similarity=0.071  Sum_probs=147.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHhhhc-----C-CCCCHHh-HHHHHHHHHccCCHHHHHHHHHhcCcc----CC-CC
Q 015329          116 GFIMRIMMLYGKAGMIKHAMDTFYDMHLY-----G-CKRTVKS-LNAALKVLTESRDLKAIQAFLMEVPEK----FH-IQ  183 (409)
Q Consensus       116 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~  183 (409)
                      .+...+...|...|+++.|+.++....+.     | ..|...+ .+.+...|...+++++|..+|+++...    .| ..
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34444666777777777777777665443     1 1233332 334666667777776666666544221    11 12


Q ss_pred             cC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCC-CCH-HHHHHHHHHHHHcCChhhHHHHHHHHHhcC---C
Q 015329          184 FD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKL-----GVK-PDV-ITYTTLISAFYKDNRPEIGNGLWNLMVCKG---C  252 (409)
Q Consensus       184 ~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~-~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~  252 (409)
                      |. ..+++.|...|.+.|++++|...+++..+.     |.. |.+ ..++.+...|+..+++++|..+++...+.-   .
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            22 445777777788888887777777665531     221 111 224556666777888888887777654321   1


Q ss_pred             C----CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC--Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 015329          253 F----PNLATFNVRIQHLVNKRRSWQANKLMGLMQRF----GI--EP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLG--  319 (409)
Q Consensus       253 ~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--  319 (409)
                      .    --..+++.+-..|...|++++|.+++++....    +.  .+ ....++.|...|.+.+.+++|.++|.+...  
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            1    12367788888888888888888888877542    11  11 244667777888888888888877776432  


Q ss_pred             --CCCC-CC-HHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 015329          320 --RRLM-PN-RKIYQTMIHYLCQEGDFNLAYIMCKDSM  353 (409)
Q Consensus       320 --~~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  353 (409)
                        .|.. |+ ..+|..|...|...|+++.|.++.+...
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence              2322 23 3567888888888888888888777654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.19  E-value=6.1e-08  Score=76.39  Aligned_cols=203  Identities=11%  Similarity=0.007  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLV  267 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~  267 (409)
                      +..-+.-.|...|+...|..-+++.++.... +..+|..+...|.+.|+.+.|.+.|+...... +-+..+.|..---+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence            3455666788888888888888888887544 66778888888888888888888888887763 445667777777888


Q ss_pred             hcCCHhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 015329          268 NKRRSWQANKLMGLMQRFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAY  346 (409)
Q Consensus       268 ~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  346 (409)
                      ..|++++|...|+.....-.-+ -..+|..+.-+..+.|+.+.|.+.|++..+.... ...+...+.+...+.|++-.|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence            8888888888888887643222 2456777777778888888888888888877433 3455677778888888888888


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          347 IMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       347 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      .+++.....+ .++..+....|+.-.+.|+.+.+-+.=..+.+..|..
T Consensus       194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            8888766655 4888888888888888888888888877777777654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.19  E-value=5.6e-07  Score=78.32  Aligned_cols=330  Identities=11%  Similarity=0.022  Sum_probs=209.9

Q ss_pred             hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 015329           56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAM  135 (409)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  135 (409)
                      ..|+...|.++|+.-..   ..|+..+|.+.|+.=.+-..++.|..+++...-.  .|....|......=.++|++..|.
T Consensus       153 ~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR  227 (677)
T KOG1915|consen  153 MLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR  227 (677)
T ss_pred             HhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence            34677777777775543   3477777777777777777777777777776543  245555555555566677777777


Q ss_pred             HHHHHhhhc-CC-CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc-----------------------CC---------
Q 015329          136 DTFYDMHLY-GC-KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK-----------------------FH---------  181 (409)
Q Consensus       136 ~~~~~m~~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------------------~~---------  181 (409)
                      .+|....+. |- ..+...+.+....=..+..++.+..+|+-..+.                       .|         
T Consensus       228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR  307 (677)
T KOG1915|consen  228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR  307 (677)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence            766665432 10 001111111111111222223333322111000                       00         


Q ss_pred             ----------CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHH-----HHHHHH---HHcCChhhHH
Q 015329          182 ----------IQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV--ITYT-----TLISAF---YKDNRPEIGN  241 (409)
Q Consensus       182 ----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~-----~ll~~~---~~~~~~~~a~  241 (409)
                                -+-|-.+|-..++.-...|+.+...++|++.... ++|-.  ..|.     -+=-++   ....+++.+.
T Consensus       308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr  386 (677)
T KOG1915|consen  308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR  386 (677)
T ss_pred             hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence                      1224455666666666667777777777777654 22211  1111     111111   2356777777


Q ss_pred             HHHHHHHhcCCCCCHhhHHHHHHHHH----hcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015329          242 GLWNLMVCKGCFPNLATFNVRIQHLV----NKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAM  317 (409)
Q Consensus       242 ~~~~~m~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  317 (409)
                      ++++...+. ++....||.-+=-.|+    ++.++..|.+++....  |..|-..+|...|..-.+.++++.+..+|++.
T Consensus       387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf  463 (677)
T KOG1915|consen  387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF  463 (677)
T ss_pred             HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            777777763 4445556655444443    5677888888877665  55888899999999999999999999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          318 LGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN-WVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       318 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      ++-+.. |..+|......-...|+.+.|..+|.-.+.+. +......|.+.|+--...|.++.|..+++.+.+......
T Consensus       464 le~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k  541 (677)
T KOG1915|consen  464 LEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK  541 (677)
T ss_pred             HhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence            988655 67788888887788999999999999888763 334556788888888889999999999999988765543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.19  E-value=3.5e-08  Score=77.75  Aligned_cols=194  Identities=9%  Similarity=-0.089  Sum_probs=95.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhc
Q 015329          120 RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEM  199 (409)
Q Consensus       120 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  199 (409)
                      .|.-.|...|+...|.+-+++.++.+ +-+..+|..+...|.+.|+.+.|.+.|+..+.-.  +-+..+.|.....+|..
T Consensus        40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~q  116 (250)
T COG3063          40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQ  116 (250)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhC
Confidence            34445555555555555555555443 2333455555555555555555555554332211  11234455555555555


Q ss_pred             CChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 015329          200 GILDKAYLVMVEMQKLGVK-PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKL  278 (409)
Q Consensus       200 g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  278 (409)
                      |++++|...|++....-.- --..+|..+.-+..+.|+.+.|...|++-.+.. +-...+.-.+.....+.|++..|..+
T Consensus       117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~  195 (250)
T COG3063         117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY  195 (250)
T ss_pred             CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence            5555555555555543111 123445555555555555555555555555442 22233444445555555555555555


Q ss_pred             HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329          279 MGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAML  318 (409)
Q Consensus       279 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  318 (409)
                      ++.....+. ++..+....|+.-...|+.+.+-++=..+.
T Consensus       196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~  234 (250)
T COG3063         196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ  234 (250)
T ss_pred             HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            555554443 455555555555555555555554444443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.19  E-value=3e-07  Score=82.51  Aligned_cols=308  Identities=10%  Similarity=-0.059  Sum_probs=187.1

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHhhhCCC-CCCh-hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHH---H
Q 015329           82 AFEDTVSRLAGARRFDYIEHLLEHQKSLPQ-GRRE-GFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNA---A  156 (409)
Q Consensus        82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---l  156 (409)
                      .|..+...+...|+.+.+.+.+....+... ..+. .........+...|++++|.+.+++..+.. +.+...+..   .
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~   86 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA   86 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence            455555666667777776666665543322 2221 222223445677899999999999987763 334444442   1


Q ss_pred             HHHHHccCCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 015329          157 LKVLTESRDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDN  235 (409)
Q Consensus       157 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~  235 (409)
                      .......+..+.+...+...   .+..|+ ......+...+...|++++|.+.+++..+.... +...+..+...+...|
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g  162 (355)
T cd05804          87 FGLGDFSGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQG  162 (355)
T ss_pred             HHhcccccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence            11122234455566655331   122333 444556677889999999999999999987543 5677888889999999


Q ss_pred             ChhhHHHHHHHHHhcCC-CCCH--hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CcCHHHH-H--HHHHHHHhcCCHH
Q 015329          236 RPEIGNGLWNLMVCKGC-FPNL--ATFNVRIQHLVNKRRSWQANKLMGLMQRFGI-EPDEVTY-N--LVIKGFCRSGHLD  308 (409)
Q Consensus       236 ~~~~a~~~~~~m~~~~~-~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~-~--~li~~~~~~g~~~  308 (409)
                      ++++|...++....... .++.  ..|..+...+...|++++|..++++...... .+..... +  .++.-+...|..+
T Consensus       163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  242 (355)
T cd05804         163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD  242 (355)
T ss_pred             CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence            99999999998877532 1232  3455678889999999999999999864432 1122211 1  2233334444433


Q ss_pred             HHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhCCC
Q 015329          309 MAKKV--YSAMLGRRL--MPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWV--------PSVDTISALLEGLKKNNQ  376 (409)
Q Consensus       309 ~a~~~--~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--------~~~~~~~~l~~~~~~~g~  376 (409)
                      .+.+.  +........  ............++...|+.++|..+++.+......        ...........++...|+
T Consensus       243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~  322 (355)
T cd05804         243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN  322 (355)
T ss_pred             hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence            33332  211111110  111122235666778889999999999887653211        112222223355678999


Q ss_pred             hHHHHHHHHHHHhcCCCC
Q 015329          377 PCKANTIMALVQRRVPHF  394 (409)
Q Consensus       377 ~~~a~~~~~~~~~~~~~~  394 (409)
                      .++|.+.+..........
T Consensus       323 ~~~A~~~L~~al~~a~~~  340 (355)
T cd05804         323 YATALELLGPVRDDLARI  340 (355)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999887665444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=8.7e-08  Score=83.48  Aligned_cols=302  Identities=11%  Similarity=-0.001  Sum_probs=205.5

Q ss_pred             HHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC-HHhHHHHHHHHHcc
Q 015329           85 DTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRT-VKSLNAALKVLTES  163 (409)
Q Consensus        85 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~  163 (409)
                      ...+-|.+.|.+++|++.|.+.....+. .+.+|.....+|...|+|+++.+--.+.++.  .|+ +..+..-.+++-..
T Consensus       120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~-epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l  196 (606)
T KOG0547|consen  120 TKGNKFFRNKKYDEAIKYYTQAIELCPD-EPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL  196 (606)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHhcCCC-CchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence            3456678999999999999999876432 2788889999999999999999988777764  344 23555555556555


Q ss_pred             CCHHHHHH----------------------HHH--------h-cC-ccCCCCcCHHHHHHHHHHHHh-------------
Q 015329          164 RDLKAIQA----------------------FLM--------E-VP-EKFHIQFDIFSFNIVIKAFCE-------------  198 (409)
Q Consensus       164 ~~~~~a~~----------------------~~~--------~-~~-~~~~~~~~~~~~~~ll~~~~~-------------  198 (409)
                      |+++++..                      +++        + +. .+..+-|+....++....+-.             
T Consensus       197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks  276 (606)
T KOG0547|consen  197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS  276 (606)
T ss_pred             ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence            55533322                      111        1 11 122334444333333332211             


Q ss_pred             ------------cC---ChhHHHHHHHHHHhC---CCCCC---------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Q 015329          199 ------------MG---ILDKAYLVMVEMQKL---GVKPD---------VITYTTLISAFYKDNRPEIGNGLWNLMVCKG  251 (409)
Q Consensus       199 ------------~g---~~~~a~~~~~~m~~~---g~~~~---------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  251 (409)
                                  .+   .+..|.+.+.+-...   ....+         ..+...-...+.-.|+.-.+..-|+..+...
T Consensus       277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~  356 (606)
T KOG0547|consen  277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD  356 (606)
T ss_pred             hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence                        01   122222222221110   01111         1222222233455799999999999999875


Q ss_pred             CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 015329          252 CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQT  331 (409)
Q Consensus       252 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  331 (409)
                      .. +...|--+...|....+.++.+..|.+..+.+.. |+.+|..=...+.-.+++++|..=|++.+..... +...|-.
T Consensus       357 ~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQ  433 (606)
T KOG0547|consen  357 PA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQ  433 (606)
T ss_pred             cc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHH
Confidence            33 2333767778899999999999999999887644 5666666666667778999999999999877433 5556666


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          332 MIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       332 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      +-.+.-+.+.+++++..|++.+++ ++..++.|+.....+...++++.|.+.++..++..+.
T Consensus       434 l~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  434 LCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            666667899999999999997764 6778899999999999999999999999999988776

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.18  E-value=4e-08  Score=89.09  Aligned_cols=244  Identities=14%  Similarity=0.119  Sum_probs=178.5

Q ss_pred             CCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc----CCC-CcCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 015329          145 GCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK----FHI-QFDIFS-FNIVIKAFCEMGILDKAYLVMVEMQKL---  215 (409)
Q Consensus       145 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~---  215 (409)
                      +.+.-..+...+...|...|+++.|+.+++...+.    .|. .|...+ .+.+...|...+++++|..+|+++...   
T Consensus       194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE  273 (508)
T ss_pred             CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            33344457777999999999999999998654332    231 233333 555778899999999999999999752   


Q ss_pred             --CCC-C-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----C-CCCCH-hhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329          216 --GVK-P-DVITYTTLISAFYKDNRPEIGNGLWNLMVCK-----G-CFPNL-ATFNVRIQHLVNKRRSWQANKLMGLMQR  284 (409)
Q Consensus       216 --g~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~  284 (409)
                        |-. | -..+++.|..+|.+.|++++|...++...+-     | ..|.+ ..++.+...|+..+++++|..+++...+
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK  353 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence              322 1 1345677777899999999988877765431     1 12232 3456677888999999999999987744


Q ss_pred             c---CCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--C-CCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 015329          285 F---GIEPD----EVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RL--M-PNRKIYQTMIHYLCQEGDFNLAYIMCK  350 (409)
Q Consensus       285 ~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~--~-p~~~~~~~li~~~~~~g~~~~a~~~~~  350 (409)
                      .   -+.++    ..+++.|...|...|++++|.++++..+..    +.  . -....++.|...|.+.+.+.+|.++|.
T Consensus       354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~  433 (508)
T KOG1840|consen  354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE  433 (508)
T ss_pred             HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence            2   11222    467899999999999999999999988654    11  2 224567888999999999999998887


Q ss_pred             HHHh----CC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015329          351 DSMK----KN--WVPSVDTISALLEGLKKNNQPCKANTIMALVQ  388 (409)
Q Consensus       351 ~m~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  388 (409)
                      +...    .|  .+-...+|..|...|...|+++.|.++.+.+.
T Consensus       434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            6543    22  23345789999999999999999999988765

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.17  E-value=3.9e-09  Score=90.06  Aligned_cols=253  Identities=11%  Similarity=0.113  Sum_probs=131.7

Q ss_pred             HHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhH
Q 015329          125 YGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDK  204 (409)
Q Consensus       125 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  204 (409)
                      +.-.|++..++.-.+ .....-..+......+.+++...|..+.+..   ++...  -.|.......+...+...++-+.
T Consensus        11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~--~~~~l~av~~la~y~~~~~~~e~   84 (290)
T PF04733_consen   11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS--SSPELQAVRLLAEYLSSPSDKES   84 (290)
T ss_dssp             HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT--SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred             HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC--CChhHHHHHHHHHHHhCccchHH
Confidence            334556666554444 2211112223334455566666666543332   22221  14444444444433333233444


Q ss_pred             HHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 015329          205 AYLVMVEMQKLGVKPDVITYT-TLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQ  283 (409)
Q Consensus       205 a~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  283 (409)
                      ++.-+++....+...+..++. .....+...|++++|++++...      .+.......+..|.+.++++.|.+.++.|.
T Consensus        85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen   85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444444333322221222222 2223344556777776665432      245555666777777777777777777776


Q ss_pred             HcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 015329          284 RFGIEPDEVTYNLVIKGFCR----SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP  359 (409)
Q Consensus       284 ~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  359 (409)
                      +.+  .| .+...+..++..    .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ +-
T Consensus       159 ~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~  233 (290)
T PF04733_consen  159 QID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN  233 (290)
T ss_dssp             CCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred             hcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence            542  22 333344444432    23577777777776554 45567777777777777777887777777776654 44


Q ss_pred             CHHHHHHHHHHHHhCCCh-HHHHHHHHHHHhcCCCC
Q 015329          360 SVDTISALLEGLKKNNQP-CKANTIMALVQRRVPHF  394 (409)
Q Consensus       360 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~  394 (409)
                      ++.++..++.+....|+. +.+.+++.+++...|.+
T Consensus       234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            566777777777777766 55667777777766654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.15  E-value=7.8e-08  Score=83.28  Aligned_cols=225  Identities=11%  Similarity=0.000  Sum_probs=131.0

Q ss_pred             CChHHHHHHHHHhhhcC-CCCC--HHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHH
Q 015329          129 GMIKHAMDTFYDMHLYG-CKRT--VKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKA  205 (409)
Q Consensus       129 ~~~~~a~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a  205 (409)
                      +..+.++.-+.+++... ..|+  ...|..+...+...|+.+.|...|++.....  +.+...|+.+...+...|++++|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence            34556666666665432 1221  3446666667777777777777776554431  22456777777888888888888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329          206 YLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       206 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  285 (409)
                      .+.|++..+.... +..+|..+..++...|++++|.+.++...+..  |+..........+...++.++|...+.+....
T Consensus       118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence            8888887775433 45666777777777888888888888777653  33221222222334566778888877665432


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 015329          286 GIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR---RL--MP-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP  359 (409)
Q Consensus       286 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  359 (409)
                      . .|+...+ .+.  ....|+...+ +.+..+.+.   ..  .| ....|..+...+.+.|++++|...|++.++.+ ++
T Consensus       195 ~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~  268 (296)
T PRK11189        195 L-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VY  268 (296)
T ss_pred             C-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc
Confidence            2 2222111 222  2234554433 233333321   11  11 23467777778888888888888888877665 33


Q ss_pred             CHHHH
Q 015329          360 SVDTI  364 (409)
Q Consensus       360 ~~~~~  364 (409)
                      +..-+
T Consensus       269 ~~~e~  273 (296)
T PRK11189        269 NFVEH  273 (296)
T ss_pred             hHHHH
Confidence            44333

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=2.5e-07  Score=79.03  Aligned_cols=293  Identities=12%  Similarity=0.027  Sum_probs=206.6

Q ss_pred             CCCchhHHHHHHHhhh-CCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHH
Q 015329           93 ARRFDYIEHLLEHQKS-LPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQA  171 (409)
Q Consensus        93 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  171 (409)
                      .++-..+.+.+-.+.. ...+.+.+....+...+...|+.++|+..|++....+ +-+........-.+...|+.+....
T Consensus       209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~  287 (564)
T KOG1174|consen  209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSA  287 (564)
T ss_pred             hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHH
Confidence            3444444444433332 2234467888899999999999999999999987543 2233333334444556777766666


Q ss_pred             HHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Q 015329          172 FLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKG  251 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  251 (409)
                      +...+....  .-+...|-.-.......+++..|+.+-++.++.... +...|-.-...+...|++++|.-.|+......
T Consensus       288 L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La  364 (564)
T KOG1174|consen  288 LMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA  364 (564)
T ss_pred             HHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence            554443321  123444555555666778899999999888876533 55566655677888999999999999887753


Q ss_pred             CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHH-HHH-HhcCCHHHHHHHHHHHHhCCCCCCH-HH
Q 015329          252 CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVI-KGF-CRSGHLDMAKKVYSAMLGRRLMPNR-KI  328 (409)
Q Consensus       252 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li-~~~-~~~g~~~~a~~~~~~m~~~~~~p~~-~~  328 (409)
                       +-+...|.-++.+|...|++.+|...-+...+.- .-+..+.+.+. ..| .....-++|.++++.-.+.  .|+. ..
T Consensus       365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~A  440 (564)
T KOG1174|consen  365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPA  440 (564)
T ss_pred             -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHH
Confidence             4578999999999999999999887666654321 22445554441 222 2233457888988877655  5553 35


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          329 YQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      .+.+...|...|....+..+++..+..  .||....+.|.+.+...+.+++|.+.|....+.+|.+.
T Consensus       441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~  505 (564)
T KOG1174|consen  441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK  505 (564)
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence            667778888899999999999988775  79999999999999999999999999999999887764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.3e-07  Score=83.93  Aligned_cols=285  Identities=11%  Similarity=-0.039  Sum_probs=212.2

Q ss_pred             ccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHH
Q 015329           79 NKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALK  158 (409)
Q Consensus        79 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  158 (409)
                      +......-.+-+-..+++.+..++.+.+....+ +....+..-|.++...|+..+-..+=.+|.+.- +-...+|-++.-
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~  320 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC  320 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence            333444455667778899999999998886643 355555555567888888887777777777653 445678988888


Q ss_pred             HHHccCCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 015329          159 VLTESRDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRP  237 (409)
Q Consensus       159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~  237 (409)
                      -|.-.|...+|.++|....   .+.|. ...|-.+...|.-.|..++|+..+...-+.=.. ...-+--+.--|.+.++.
T Consensus       321 YYl~i~k~seARry~SKat---~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~  396 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKAT---TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNL  396 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHh---hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccH
Confidence            8888899999999995432   23333 457888999999999999999998887763111 111122344557889999


Q ss_pred             hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCC--cCHHHHHHHHHHHHhcCCHHHHH
Q 015329          238 EIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF----GIE--PDEVTYNLVIKGFCRSGHLDMAK  311 (409)
Q Consensus       238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--p~~~~~~~li~~~~~~g~~~~a~  311 (409)
                      +.|.+.|.+.... .+-|+...+-+.-.....+.+.+|..+|+..+..    +-+  .-..+++.|..+|.+.+.+++|+
T Consensus       397 kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI  475 (611)
T KOG1173|consen  397 KLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI  475 (611)
T ss_pred             HHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence            9999999988875 3567788888877777888999999999887621    111  13456888999999999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015329          312 KVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKK  373 (409)
Q Consensus       312 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~  373 (409)
                      ..++..+....+ |..++.++.-.|...|+++.|.+.|.+.+-.  .|+-.+...++..++.
T Consensus       476 ~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  476 DYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence            999998877444 8889999999999999999999999987754  6887777766655444

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.11  E-value=2.7e-06  Score=76.96  Aligned_cols=100  Identities=15%  Similarity=0.199  Sum_probs=51.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 015329          294 YNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSV-DTISALLEGLK  372 (409)
Q Consensus       294 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~  372 (409)
                      |...++.--..|-++....+|+++.+..+. ++.........+-...-++++++++++-+..--.|+. ..|+..+.-+.
T Consensus       480 Ws~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi  558 (835)
T KOG2047|consen  480 WSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI  558 (835)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence            333444444455566666666666655443 2222222222223344466666666654332112333 45666665544


Q ss_pred             h---CCChHHHHHHHHHHHhcCCCC
Q 015329          373 K---NNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       373 ~---~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      +   ....+.|..+|++..+.-|+.
T Consensus       559 ~rygg~klEraRdLFEqaL~~Cpp~  583 (835)
T KOG2047|consen  559 KRYGGTKLERARDLFEQALDGCPPE  583 (835)
T ss_pred             HHhcCCCHHHHHHHHHHHHhcCCHH
Confidence            4   235888888888888865543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.08  E-value=2e-08  Score=85.81  Aligned_cols=80  Identities=11%  Similarity=0.013  Sum_probs=32.9

Q ss_pred             HhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHH
Q 015329          272 SWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF-NLAYIMCK  350 (409)
Q Consensus       272 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~  350 (409)
                      +.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. +..+...++.+....|+. +.+.+++.
T Consensus       183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            44455555554332 2234444444444455555555555555444433221 333344444444444444 33334444


Q ss_pred             HHH
Q 015329          351 DSM  353 (409)
Q Consensus       351 ~m~  353 (409)
                      ++.
T Consensus       261 qL~  263 (290)
T PF04733_consen  261 QLK  263 (290)
T ss_dssp             HCH
T ss_pred             HHH
Confidence            433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.08  E-value=2.4e-06  Score=77.28  Aligned_cols=96  Identities=10%  Similarity=0.135  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329          294 YNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR-KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLK  372 (409)
Q Consensus       294 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~  372 (409)
                      +-.++..|-+.|+++.|..+++..+.+  .|+. ..|..=.+.+...|++++|..++++..+-+ .+|...-..-..-..
T Consensus       374 ~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL  450 (700)
T KOG1156|consen  374 LYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML  450 (700)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence            345567778888899998888888865  5554 345555677888889999988888877665 455554445556667


Q ss_pred             hCCChHHHHHHHHHHHhcCC
Q 015329          373 KNNQPCKANTIMALVQRRVP  392 (409)
Q Consensus       373 ~~g~~~~a~~~~~~~~~~~~  392 (409)
                      +.++.++|.+++....+.+.
T Consensus       451 rAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  451 RANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             HccccHHHHHHHHHhhhccc
Confidence            78888888888888777664

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.07  E-value=3.5e-06  Score=76.22  Aligned_cols=341  Identities=12%  Similarity=0.053  Sum_probs=202.9

Q ss_pred             CCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCC-----------
Q 015329           43 DKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQ-----------  111 (409)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------  111 (409)
                      ...+|...+.-+...+-|+-++.++++..+-.   |  ..-+-.|..++..+++++|.+.+........           
T Consensus       137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~---P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~q  211 (835)
T KOG2047|consen  137 HDRIWDLYLKFVESHGLPETSIRVYRRYLKVA---P--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQ  211 (835)
T ss_pred             hccchHHHHHHHHhCCChHHHHHHHHHHHhcC---H--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhh
Confidence            34567777777777788888888888886544   3  3366677778888888888777766442210           


Q ss_pred             ---------------------------------CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHH
Q 015329          112 ---------------------------------GRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALK  158 (409)
Q Consensus       112 ---------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  158 (409)
                                                       ..-...|.+|...|.+.|.+++|.++|++....  ..+..-|..+.+
T Consensus       212 lw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd  289 (835)
T KOG2047|consen  212 LWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFD  289 (835)
T ss_pred             HHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHH
Confidence                                             001224788999999999999999999987653  334444445555


Q ss_pred             HHHcc----------------CCH------HHHHHHHHhcCccCC-----------------------------------
Q 015329          159 VLTES----------------RDL------KAIQAFLMEVPEKFH-----------------------------------  181 (409)
Q Consensus       159 ~~~~~----------------~~~------~~a~~~~~~~~~~~~-----------------------------------  181 (409)
                      +|+.-                ++.      +....-|+.++.+..                                   
T Consensus       290 ~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~t  369 (835)
T KOG2047|consen  290 AYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINT  369 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHH
Confidence            44321                111      111112222111110                                   


Q ss_pred             -------CCcC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChhhHHHHHH
Q 015329          182 -------IQFD------IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD---VITYTTLISAFYKDNRPEIGNGLWN  245 (409)
Q Consensus       182 -------~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~  245 (409)
                             +.|.      ...|..+.+.|-..|+++.|..+|++..+...+--   ..+|-....+=.+..+++.|+++.+
T Consensus       370 yteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~  449 (835)
T KOG2047|consen  370 YTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR  449 (835)
T ss_pred             HHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence                   1111      13366667777777888888888887776543211   2334444444555667777777666


Q ss_pred             HHHhcC-----------CC------CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 015329          246 LMVCKG-----------CF------PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLD  308 (409)
Q Consensus       246 ~m~~~~-----------~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  308 (409)
                      ......           .+      .+...|...++.--..|-++....+|+.+.+..+. ++.........+-.+.-++
T Consensus       450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfe  528 (835)
T KOG2047|consen  450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFE  528 (835)
T ss_pred             hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHH
Confidence            554221           11      13345555566666677788888888888776654 3333222333344556678


Q ss_pred             HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHH---cCCHhHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhCCChHHHHH
Q 015329          309 MAKKVYSAMLGRRLMPNR-KIYQTMIHYLCQ---EGDFNLAYIMCKDSMKKNWVPSVDTISALL--EGLKKNNQPCKANT  382 (409)
Q Consensus       309 ~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~  382 (409)
                      ++.++|++-+..=.-|+. ..|+..+.-+.+   ....+.|..+|++.++ |.+|...-+-.|+  ..--+.|....|+.
T Consensus       529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ams  607 (835)
T KOG2047|consen  529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMS  607 (835)
T ss_pred             HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            888888876655223444 456766665543   3458899999999888 6565443222222  22334678888888


Q ss_pred             HHHHHHhcCC
Q 015329          383 IMALVQRRVP  392 (409)
Q Consensus       383 ~~~~~~~~~~  392 (409)
                      +++++.....
T Consensus       608 iyerat~~v~  617 (835)
T KOG2047|consen  608 IYERATSAVK  617 (835)
T ss_pred             HHHHHHhcCC
Confidence            8888665543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.07  E-value=5.9e-07  Score=75.37  Aligned_cols=88  Identities=8%  Similarity=-0.078  Sum_probs=65.2

Q ss_pred             HHhhhhcCChHHHHHHHHHhhcCCCCCCcc-chHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcC
Q 015329           51 LVKLKAERDPEKLFQLFKANAHNRIVIENK-YAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAG  129 (409)
Q Consensus        51 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  129 (409)
                      +..+...+|+..|..+++.....+  .... .+---+..++.+.|++++|...+..+... ..++...+..|.-++.-.|
T Consensus        29 Ledfls~rDytGAislLefk~~~~--~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg  105 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLD--REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLG  105 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccc--hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHH
Confidence            777888899999999999876554  1222 22233456777999999999999988764 3446667777887778888


Q ss_pred             ChHHHHHHHHHh
Q 015329          130 MIKHAMDTFYDM  141 (409)
Q Consensus       130 ~~~~a~~~~~~m  141 (409)
                      .+.+|..+-.+.
T Consensus       106 ~Y~eA~~~~~ka  117 (557)
T KOG3785|consen  106 QYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHhhC
Confidence            999988876554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=7.7e-07  Score=76.16  Aligned_cols=289  Identities=12%  Similarity=0.047  Sum_probs=208.1

Q ss_pred             CChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 015329           58 RDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDT  137 (409)
Q Consensus        58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  137 (409)
                      ++...|...+-.+.....++.|......+.+.+...|+.++|+..|++....++- +........-.+.+.|+.+....+
T Consensus       210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L  288 (564)
T KOG1174|consen  210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSAL  288 (564)
T ss_pred             cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHH
Confidence            4445555555555555546788888999999999999999999999998865332 111122223345678899988888


Q ss_pred             HHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 015329          138 FYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGV  217 (409)
Q Consensus       138 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~  217 (409)
                      ...+.... +-+...|-.-+.......+++.|..+-+...+-.  +.+...|-.-...+...|+.+.|.-.|+.......
T Consensus       289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap  365 (564)
T KOG1174|consen  289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP  365 (564)
T ss_pred             HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence            88876543 3344455555566667778888887775443221  22344555555778899999999999999887643


Q ss_pred             CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHH-HHHH-hcCCHhHHHHHHHHHHHcCCCcC-HHHH
Q 015329          218 KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRI-QHLV-NKRRSWQANKLMGLMQRFGIEPD-EVTY  294 (409)
Q Consensus       218 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~p~-~~~~  294 (409)
                       -+...|.-|+.+|...|+..+|..+-+...+. ++.+..+.+.+. ..+. .-..-++|.+++++-...  +|+ ....
T Consensus       366 -~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV  441 (564)
T KOG1174|consen  366 -YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV  441 (564)
T ss_pred             -hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence             37899999999999999999998777665543 233555554442 2222 223356888888887765  555 3456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329          295 NLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN  356 (409)
Q Consensus       295 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  356 (409)
                      +.+...+...|..+.++.++++....  .||....+.|.+.+...+.+.+|++.|...++.+
T Consensus       442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  442 NLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            67778889999999999999998865  7899999999999999999999999999888764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.04  E-value=9.5e-07  Score=79.28  Aligned_cols=91  Identities=10%  Similarity=0.030  Sum_probs=40.8

Q ss_pred             HHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHH
Q 015329          156 ALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGV-KPDV--ITYTTLISAFY  232 (409)
Q Consensus       156 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~ll~~~~  232 (409)
                      +...+...|+++.|...+++.....  +.+...+..+...+...|++++|..++++...... .++.  ..|..+...+.
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~  197 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL  197 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence            3344445555555555554443321  11233444445555555555555555555444221 1111  12333444455


Q ss_pred             HcCChhhHHHHHHHHH
Q 015329          233 KDNRPEIGNGLWNLMV  248 (409)
Q Consensus       233 ~~~~~~~a~~~~~~m~  248 (409)
                      ..|++++|..++++..
T Consensus       198 ~~G~~~~A~~~~~~~~  213 (355)
T cd05804         198 ERGDYEAALAIYDTHI  213 (355)
T ss_pred             HCCCHHHHHHHHHHHh
Confidence            5555555555555543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=1.3e-05  Score=71.87  Aligned_cols=113  Identities=12%  Similarity=0.149  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC------CCC
Q 015329          293 TYNLVIKGFCRSGHLDMAKKVYS--------AMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK------NWV  358 (409)
Q Consensus       293 ~~~~li~~~~~~g~~~~a~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~  358 (409)
                      ..-.++......|+++.|.+++.        .+.+.+..|  .+...++..+.+.++-+.|..++.+.+.-      +-.
T Consensus       378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~  455 (652)
T KOG2376|consen  378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI  455 (652)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence            33445556677899999999988        444444444  44566667777777766666666655431      111


Q ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhhcc
Q 015329          359 PSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSK  408 (409)
Q Consensus       359 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~k  408 (409)
                      .-..++.-+...-.+.|+-++|..+++++.+.+++ +..++..++.+|++
T Consensus       456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~  504 (652)
T KOG2376|consen  456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYAR  504 (652)
T ss_pred             HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHh
Confidence            11223444445556789999999999999987754 45566777777764

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.94  E-value=9.6e-07  Score=72.39  Aligned_cols=291  Identities=11%  Similarity=0.056  Sum_probs=199.1

Q ss_pred             ChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHH-HHHHHH
Q 015329           47 EPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIM-RIMMLY  125 (409)
Q Consensus        47 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~  125 (409)
                      +...+-.+.+..++..|++++..-.+..  +.+....+.+..+|.+..++..|-..++++....+.  ..-|. --.+.+
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--~~qYrlY~AQSL   88 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--LEQYRLYQAQSL   88 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHHH
Confidence            3456777888899999999999887776  337777888999999999999999999999876443  22232 235666


Q ss_pred             HhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHH--HHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChh
Q 015329          126 GKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALK--VLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILD  203 (409)
Q Consensus       126 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  203 (409)
                      -+.+.+..|+.+...|.+.   +....-..-+.  .....+++..+..++++....    .+..+.+...-...+.|+++
T Consensus        89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegqyE  161 (459)
T KOG4340|consen   89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQYE  161 (459)
T ss_pred             HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----CccchhccchheeeccccHH
Confidence            7889999999999988752   22211111111  234567778888888666432    24555555555667899999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-------------CCH--------------
Q 015329          204 KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCF-------------PNL--------------  256 (409)
Q Consensus       204 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-------------~~~--------------  256 (409)
                      .|.+-|+...+-|.--....|+..+-. .+.|+++.|++...++.++|++             ||+              
T Consensus       162 aAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal  240 (459)
T KOG4340|consen  162 AAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL  240 (459)
T ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence            999999999885433367888876654 4678999999999999988754             121              


Q ss_pred             -hhHHHHHHHHHhcCCHhHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329          257 -ATFNVRIQHLVNKRRSWQANKLMGLMQR-FGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH  334 (409)
Q Consensus       257 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  334 (409)
                       ..+|.-...+.+.|+++.|.+-+-.|-- ...+.|++|...+.-.-. .+++.+..+-+.-+.....- -..||..++-
T Consensus       241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlLl  318 (459)
T KOG4340|consen  241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPETFANLLL  318 (459)
T ss_pred             HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHHHHHHHH
Confidence             2233333455677888888888877721 122446677655543222 34455555555555555443 4678888888


Q ss_pred             HHHHcCCHhHHHHHHHH
Q 015329          335 YLCQEGDFNLAYIMCKD  351 (409)
Q Consensus       335 ~~~~~g~~~~a~~~~~~  351 (409)
                      .||+..-++.|-.++-+
T Consensus       319 lyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  319 LYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHhhhHHHhHHHHHHhh
Confidence            99998888888877765

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.94  E-value=3.8e-07  Score=81.26  Aligned_cols=237  Identities=16%  Similarity=0.099  Sum_probs=153.7

Q ss_pred             CcCCCCCCCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC
Q 015329           35 FPNREPLVDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR  114 (409)
Q Consensus        35 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  114 (409)
                      +...+|..+.+-....=..+.+.|+..+|.-.|+...+.+  +.+..+|-.|.......++-..|+..+++..+..+. +
T Consensus       276 F~e~Np~~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-N  352 (579)
T KOG1125|consen  276 FSEENPYIDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-N  352 (579)
T ss_pred             ecccCcccCCCChHHHHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-c
Confidence            3444455555544444556778888999999999998887  567788888888888888888899999998877554 6


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHH-----------HHHHccCCHHHHHHHHHhcCccCCCC
Q 015329          115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAAL-----------KVLTESRDLKAIQAFLMEVPEKFHIQ  183 (409)
Q Consensus       115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-----------~~~~~~~~~~~a~~~~~~~~~~~~~~  183 (409)
                      ......|.-.|...|.-.+|++.|+..+....+     |..+.           ..+.....+..+.++|-++....+..
T Consensus       353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~  427 (579)
T KOG1125|consen  353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTK  427 (579)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence            777778888899999999999999888654311     00000           01111122244444444554444544


Q ss_pred             cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC-HhhHHHH
Q 015329          184 FDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN-LATFNVR  262 (409)
Q Consensus       184 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l  262 (409)
                      +|......|.-.|--.|++++|.+.|+..+..... |...||-|.-.++...+.++|+..|++.++.  +|+ +.+...|
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNl  504 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNL  504 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhh
Confidence            55556666666666667777777777777665433 5666777777777666777777777766663  343 2333444


Q ss_pred             HHHHHhcCCHhHHHHHHHHH
Q 015329          263 IQHLVNKRRSWQANKLMGLM  282 (409)
Q Consensus       263 l~~~~~~~~~~~a~~~~~~~  282 (409)
                      .-+|...|.+++|.+.|-..
T Consensus       505 gIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  505 GISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             hhhhhhhhhHHHHHHHHHHH
Confidence            44566666666666665544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=4.7e-06  Score=73.88  Aligned_cols=202  Identities=12%  Similarity=0.017  Sum_probs=139.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCC--C----HhhHHHH
Q 015329          189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFP--N----LATFNVR  262 (409)
Q Consensus       189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~----~~~~~~l  262 (409)
                      ...+.++..+..+++.|++.+....+..  -+..-++....+|...|.+.++...-....+.|-.-  +    ...+..+
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~  304 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL  304 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            4556777777888999999998888765  355566667777888888877766666555544211  0    1122223


Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHH
Q 015329          263 IQHLVNKRRSWQANKLMGLMQRFGIEPDEVTY-------------------------NLVIKGFCRSGHLDMAKKVYSAM  317 (409)
Q Consensus       263 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~a~~~~~~m  317 (409)
                      -.+|.+.++++.+...|.+.......|+...-                         ..-...+.+.|++..|+..|.++
T Consensus       305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA  384 (539)
T KOG0548|consen  305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA  384 (539)
T ss_pred             hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            44677778888999888887665444443221                         11123356788999999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          318 LGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       318 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      ++.... |...|..-.-+|.+.|.+..|++=.+.-++.+ ++....|..=..++.-..+++.|.+.|.+..+.+|..
T Consensus       385 Ikr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~  459 (539)
T KOG0548|consen  385 IKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN  459 (539)
T ss_pred             HhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            888633 77889999999999999999888777766653 4444555555566666778999999999888887443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.93  E-value=1.3e-05  Score=74.12  Aligned_cols=345  Identities=12%  Similarity=-0.008  Sum_probs=205.6

Q ss_pred             CCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC-hhHHHHHHH
Q 015329           45 PLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR-EGFIMRIMM  123 (409)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~  123 (409)
                      .++..+...+...|+++.+.+.|+.....-  -.....|..+...+...|.-..|..+++........|+ ...+...-.
T Consensus       324 ai~d~Lt~al~~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask  401 (799)
T KOG4162|consen  324 AIFDHLTFALSRCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK  401 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence            344455556677788888888888775443  23445677777777888887888888887665443333 233322223


Q ss_pred             HH-HhcCChHHHHHHHHHhhh--cCC--CCCHHhHHHHHHHHHcc----CC-------HHHHHHHHHhcCccCCCCcCHH
Q 015329          124 LY-GKAGMIKHAMDTFYDMHL--YGC--KRTVKSLNAALKVLTES----RD-------LKAIQAFLMEVPEKFHIQFDIF  187 (409)
Q Consensus       124 ~~-~~~~~~~~a~~~~~~m~~--~~~--~~~~~~~~~ll~~~~~~----~~-------~~~a~~~~~~~~~~~~~~~~~~  187 (409)
                      .| -+.+..++++++-.+...  .+.  ......|..+.-+|...    ..       ..++.+.+++.....+..|++.
T Consensus       402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i  481 (799)
T KOG4162|consen  402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI  481 (799)
T ss_pred             HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence            33 345566666666555544  111  12223344444444321    11       1445555555545545555544


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CC--------------
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK-GC--------------  252 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~--------------  252 (409)
                      .|-.  --|+..++++.|++..++..+.+..-+...|..+.-.+...+++.+|+.+.+..... |.              
T Consensus       482 f~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~  559 (799)
T KOG4162|consen  482 FYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT  559 (799)
T ss_pred             HHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence            4433  346667788888888888888755567888887777777777777777666544321 10              


Q ss_pred             ----CCCHh-----------------------------------------------------------------------
Q 015329          253 ----FPNLA-----------------------------------------------------------------------  257 (409)
Q Consensus       253 ----~~~~~-----------------------------------------------------------------------  257 (409)
                          .--..                                                                       
T Consensus       560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~  639 (799)
T KOG4162|consen  560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL  639 (799)
T ss_pred             cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence                00001                                                                       


Q ss_pred             ------------hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 015329          258 ------------TFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN  325 (409)
Q Consensus       258 ------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~  325 (409)
                                  .|......+.+.+..++|...+.+..+.. ......|......+...|..++|.+.|......+.. +
T Consensus       640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-h  717 (799)
T KOG4162|consen  640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-H  717 (799)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-C
Confidence                        11222233333444444444444333321 113334444444555667777888777777665322 4


Q ss_pred             HHHHHHHHHHHHHcCCHhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329          326 RKIYQTMIHYLCQEGDFNLAYI--MCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSS  396 (409)
Q Consensus       326 ~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  396 (409)
                      +.+..++..++.+.|+..-|..  ++.++.+.+ +.+...|..+...+.+.|+.+.|.+-|....+.....+.
T Consensus       718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            5567788888888888777777  888888877 678888888889999999999998888887766654443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.92  E-value=1.1e-06  Score=72.08  Aligned_cols=293  Identities=13%  Similarity=0.070  Sum_probs=203.5

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHH-HHHHH
Q 015329           82 AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNA-ALKVL  160 (409)
Q Consensus        82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~~  160 (409)
                      -+...+..+++..++++|++++..-....+. +..-...|..+|-...++..|-+.|+++-..  .|...-|.. -...+
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL   88 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence            3677788889999999999999887766443 5666777889999999999999999999764  465555543 34566


Q ss_pred             HccCCHHHHHHHHHhcCccCCCCcCHHHHHHHH--HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 015329          161 TESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVI--KAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPE  238 (409)
Q Consensus       161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~  238 (409)
                      .+.+.+..|..+...|.+.    ++...-..-+  ......+|+-.+..+++.....|   +..+.+...-...+.|+++
T Consensus        89 Y~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE  161 (459)
T KOG4340|consen   89 YKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE  161 (459)
T ss_pred             HHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence            6778888888888555432    2222111112  22345688888888888876432   3444444444556899999


Q ss_pred             hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-------------cCHH--------HHHHH
Q 015329          239 IGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE-------------PDEV--------TYNLV  297 (409)
Q Consensus       239 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------p~~~--------~~~~l  297 (409)
                      .|.+-|+...+-+--.....|+..+..| +.|+.+.|++...++.+.|++             ||+.        .-+.+
T Consensus       162 aAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal  240 (459)
T KOG4340|consen  162 AAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL  240 (459)
T ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence            9999999998865455567788777665 568899999999999887754             2221        12333


Q ss_pred             HHH-------HHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329          298 IKG-------FCRSGHLDMAKKVYSAMLGR-RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLE  369 (409)
Q Consensus       298 i~~-------~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~  369 (409)
                      +.+       +.+.|+.+.|.+.+.+|.-+ .-..|+.|...+.-.=. .+++.+..+-+.-++..+ +-...||..++-
T Consensus       241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLl  318 (459)
T KOG4340|consen  241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLL  318 (459)
T ss_pred             HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHH
Confidence            333       45789999999999888654 23456677655433222 344555555555555554 456789999999


Q ss_pred             HHHhCCChHHHHHHHHHH
Q 015329          370 GLKKNNQPCKANTIMALV  387 (409)
Q Consensus       370 ~~~~~g~~~~a~~~~~~~  387 (409)
                      .|+++.-++.|-.++.+-
T Consensus       319 lyCKNeyf~lAADvLAEn  336 (459)
T KOG4340|consen  319 LYCKNEYFDLAADVLAEN  336 (459)
T ss_pred             HHhhhHHHhHHHHHHhhC
Confidence            999999999998887653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.88  E-value=1.9e-05  Score=80.17  Aligned_cols=310  Identities=9%  Similarity=0.030  Sum_probs=190.8

Q ss_pred             HHHHHHhcCCCchhHHHHHHHhhhCCCC------CC--hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC----HHh
Q 015329           85 DTVSRLAGARRFDYIEHLLEHQKSLPQG------RR--EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRT----VKS  152 (409)
Q Consensus        85 ~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~  152 (409)
                      .....+...|+++++..++......-..      +.  ......+...+...|++++|...+++..+.--..+    ...
T Consensus       414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a  493 (903)
T PRK04841        414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA  493 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            3445556778888888888776432111      01  11122233456678999999999988765311111    123


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHhcCcc---CCC-CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCC--C-CH
Q 015329          153 LNAALKVLTESRDLKAIQAFLMEVPEK---FHI-QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQK----LGVK--P-DV  221 (409)
Q Consensus       153 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~--~-~~  221 (409)
                      .+.+...+...|+++.+...+++....   .|- .....++..+...+...|+++.|...+++...    .|..  + ..
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  573 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE  573 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            455666677889998888877654322   111 11233456667778889999999988887654    2211  1 12


Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC-HHHH--
Q 015329          222 ITYTTLISAFYKDNRPEIGNGLWNLMVCKG--CFP--NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD-EVTY--  294 (409)
Q Consensus       222 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~--  294 (409)
                      ..+..+...+...|++++|...+.+.....  ..+  ....+..+...+...|+.++|...+........... ...+  
T Consensus       574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~  653 (903)
T PRK04841        574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA  653 (903)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence            334455566777899999988888765421  111  233444456677788999999988888754211111 1111  


Q ss_pred             ---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCCC-HHH
Q 015329          295 ---NLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN---RKIYQTMIHYLCQEGDFNLAYIMCKDSMKK----NWVPS-VDT  363 (409)
Q Consensus       295 ---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~  363 (409)
                         ...+..+...|+.+.|...+...........   ...+..+..++...|++++|...+++....    |...+ ..+
T Consensus       654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~  733 (903)
T PRK04841        654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN  733 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence               1122445567889999888776554321111   111345667788899999999999887653    32222 245


Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          364 ISALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       364 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      ...+..++.+.|+.++|.+.+.+..+...+.
T Consensus       734 ~~~la~a~~~~G~~~~A~~~L~~Al~la~~~  764 (903)
T PRK04841        734 LILLNQLYWQQGRKSEAQRVLLEALKLANRT  764 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence            6666788999999999999999987766444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.84  E-value=6.5e-05  Score=68.37  Aligned_cols=329  Identities=10%  Similarity=0.066  Sum_probs=191.8

Q ss_pred             hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 015329           56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAM  135 (409)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  135 (409)
                      .-|+-++|.+......+.+  .-+.+.|+.+.-.+....++++|++.|......+.. +..++.-+.-.-++.|+++...
T Consensus        53 ~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~  129 (700)
T KOG1156|consen   53 CLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYL  129 (700)
T ss_pred             cccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHH
Confidence            4467777777777776655  345666777666666677777777777777766443 5566665555556667777777


Q ss_pred             HHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHH------HHhcCChhHHHHHH
Q 015329          136 DTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKA------FCEMGILDKAYLVM  209 (409)
Q Consensus       136 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~------~~~~g~~~~a~~~~  209 (409)
                      +....+.+.. +-....|..+..++.-.|+...|..+.++........|+...+.-....      ..+.|.++.|.+.+
T Consensus       130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L  208 (700)
T KOG1156|consen  130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL  208 (700)
T ss_pred             HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            7777666542 2233456666677777777777777776664443334555554443332      33456666666655


Q ss_pred             HHHHhCCCCCCHHHH-HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH-hcCCHhHHH-HHHHHHHHcC
Q 015329          210 VEMQKLGVKPDVITY-TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLV-NKRRSWQAN-KLMGLMQRFG  286 (409)
Q Consensus       210 ~~m~~~g~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~  286 (409)
                      ..-...  ..|-..+ ..-...+.+.+++++|..++..+...  .||..-|...+..+. +-.+..++. .+|....+.-
T Consensus       209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y  284 (700)
T KOG1156|consen  209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY  284 (700)
T ss_pred             HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence            544332  1132222 33445677888889999999888887  366666655554443 333344444 6666664421


Q ss_pred             C---CcCH----------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-----------
Q 015329          287 I---EPDE----------------------------VTYNLVIKGFCRSGHLDMAKKVYSAMLGR--RL-----------  322 (409)
Q Consensus       287 ~---~p~~----------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~-----------  322 (409)
                      .   .|-.                            .++..+...|-.....+-..++.-.+...  |-           
T Consensus       285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~  364 (700)
T KOG1156|consen  285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ  364 (700)
T ss_pred             cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence            0   0100                            01111111111111111111111111111  11           


Q ss_pred             -CCCHHHHH--HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          323 -MPNRKIYQ--TMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVD-TISALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       323 -~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                       .|+...|+  .+++.+-+.|+++.|..+++..+..  .|+.. .|..=.+.+...|+.++|..++++..+.+.++
T Consensus       365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD  438 (700)
T KOG1156|consen  365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD  438 (700)
T ss_pred             CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence             45555554  4677788899999999999987765  56543 44455588889999999999999988776443

>PF12854 PPR_1: PPR repeat

Probab=98.84  E-value=5.4e-09  Score=57.15  Aligned_cols=30  Identities=43%  Similarity=0.908  Sum_probs=12.1

Q ss_pred             CCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015329          287 IEPDEVTYNLVIKGFCRSGHLDMAKKVYSA  316 (409)
Q Consensus       287 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  316 (409)
                      +.||..||+.||.+|++.|++++|.++|++
T Consensus         3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            334444444444444444444444444433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.83  E-value=3.3e-06  Score=77.50  Aligned_cols=231  Identities=11%  Similarity=0.053  Sum_probs=168.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhc
Q 015329          120 RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEM  199 (409)
Q Consensus       120 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  199 (409)
                      .+...+...|-..+|..+|+++.         .|..++.+|...|+..+|..+..+..++   +||...|..+.+.....
T Consensus       403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~~d~  470 (777)
T KOG1128|consen  403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVLHDP  470 (777)
T ss_pred             HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhccCh
Confidence            46677888899999999998875         4777888889999888888887666554   67888888777776666


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 015329          200 GILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLM  279 (409)
Q Consensus       200 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  279 (409)
                      .-+++|.++.+.....       .-..+.....+.++++++.+.|+.-.+.+ +....+|-..-.+..+.+++..|.+.|
T Consensus       471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF  542 (777)
T KOG1128|consen  471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF  542 (777)
T ss_pred             HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence            6677777777654321       11222222334688888888888776653 456677888888888889999999988


Q ss_pred             HHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-C
Q 015329          280 GLMQRFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN-W  357 (409)
Q Consensus       280 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~  357 (409)
                      ..-...  .| +...||.+-.+|.+.|+..+|...+.+..+.+ .-+...|...+-...+.|.+++|++.+.++.... .
T Consensus       543 ~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~  619 (777)
T KOG1128|consen  543 HRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK  619 (777)
T ss_pred             HHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence            887765  44 46689999999999999999999999988886 3356677777777888999999999888876532 1


Q ss_pred             CCCHHHHHHHHHHHHh
Q 015329          358 VPSVDTISALLEGLKK  373 (409)
Q Consensus       358 ~~~~~~~~~l~~~~~~  373 (409)
                      ..|......++....+
T Consensus       620 ~~d~~vl~~iv~~~~~  635 (777)
T KOG1128|consen  620 YKDDEVLLIIVRTVLE  635 (777)
T ss_pred             cccchhhHHHHHHHHh
Confidence            2255555555544433

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.81  E-value=8.3e-06  Score=80.08  Aligned_cols=249  Identities=9%  Similarity=0.032  Sum_probs=179.3

Q ss_pred             HHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC---HHHHHHHHHHHHhcCChhHHHHHH
Q 015329          133 HAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD---IFSFNIVIKAFCEMGILDKAYLVM  209 (409)
Q Consensus       133 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~  209 (409)
                      .|.++-+.....  +-+...|-..|....+.++.++|..+.++.....++.-.   ...|.++++.-..-|.-+...++|
T Consensus      1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred             CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence            444444444331  334567888888888888888888888776655433222   335667777666777788888999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 015329          210 VEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP  289 (409)
Q Consensus       210 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p  289 (409)
                      +++.+..  -....|..|...|.+.+++++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+.=.+-
T Consensus      1521 eRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1521 ERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred             HHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence            9988752  23556788888999999999999999999875 33577888889999999999899999998887752221


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH--HHHHH
Q 015329          290 -DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSV--DTISA  366 (409)
Q Consensus       290 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~  366 (409)
                       ........+..-.+.|+.+.+..+|+.......+ -...|+..|+.-.++|+.+.+..+|++.+..++.|-.  ..|..
T Consensus      1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred             hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence             2233444555566889999999999988876433 4567999999999999999999999999988877654  45677


Q ss_pred             HHHHHHhCCChHHHHHHHHHH
Q 015329          367 LLEGLKKNNQPCKANTIMALV  387 (409)
Q Consensus       367 l~~~~~~~g~~~~a~~~~~~~  387 (409)
                      .+..--..|+-+.++.+=.++
T Consensus      1677 wLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1677 WLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred             HHHHHHhcCchhhHHHHHHHH
Confidence            776666667755554443333

>PF12854 PPR_1: PPR repeat

Probab=98.80  E-value=9.6e-09  Score=56.15  Aligned_cols=32  Identities=22%  Similarity=0.445  Sum_probs=21.2

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329          321 RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS  352 (409)
Q Consensus       321 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  352 (409)
                      |+.||..+|+.||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            55666666666666666666666666666665

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.79  E-value=2.1e-06  Score=72.08  Aligned_cols=189  Identities=12%  Similarity=0.012  Sum_probs=128.9

Q ss_pred             cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHh---h
Q 015329          184 FDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-P-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLA---T  258 (409)
Q Consensus       184 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~  258 (409)
                      .....+..+...+...|+++.|...|+++...... | ...++..+..++.+.|++++|...++.+.+.. +.+..   +
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a  109 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA  109 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence            35667788888899999999999999998875322 1 12466777888999999999999999998753 11221   3


Q ss_pred             HHHHHHHHHhc--------CCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 015329          259 FNVRIQHLVNK--------RRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQ  330 (409)
Q Consensus       259 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  330 (409)
                      +..+..++...        |+.++|.+.++.+.+.... +...+..+.....    ....      ..        ....
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~~--------~~~~  170 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------LA--------GKEL  170 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------HH--------HHHH
Confidence            44455555544        6788888888888776322 2222222211100    0000      00        0112


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329          331 TMIHYLCQEGDFNLAYIMCKDSMKKN--WVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP  392 (409)
Q Consensus       331 ~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  392 (409)
                      .+...+.+.|++.+|...+++.++..  -+.....+..+..++.+.|++++|...++.+....|
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            45567889999999999999988762  123457888999999999999999999998887765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=98.79  E-value=1.5e-05  Score=69.18  Aligned_cols=144  Identities=13%  Similarity=0.020  Sum_probs=80.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccC-CHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHh
Q 015329          120 RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESR-DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCE  198 (409)
Q Consensus       120 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~  198 (409)
                      .+-..+...++.++|+.+.+++++.. +-+..+|+..-.++...| +++++..+++++....  +-+..+|+.....+.+
T Consensus        42 ~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~  118 (320)
T PLN02789         42 YFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEK  118 (320)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHH
Confidence            34444556667777777777777653 233345555555555555 3466666665554431  1233445544444445


Q ss_pred             cCCh--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329          199 MGIL--DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN  268 (409)
Q Consensus       199 ~g~~--~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  268 (409)
                      .|+.  ++++.+++++.+...+ +..+|+...-.+...|+++++++.++++++.+ ..|...|+.....+.+
T Consensus       119 l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~  188 (320)
T PLN02789        119 LGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITR  188 (320)
T ss_pred             cCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHh
Confidence            5542  4566666666665444 56666666666666666666776666666654 3344555554444433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.77  E-value=5.6e-05  Score=63.60  Aligned_cols=307  Identities=11%  Similarity=0.044  Sum_probs=133.8

Q ss_pred             hhhcCChHHHHHHHHHhhcCCCCCCcc-chHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHH---HHHHHHhcC
Q 015329           54 LKAERDPEKLFQLFKANAHNRIVIENK-YAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMR---IMMLYGKAG  129 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~  129 (409)
                      +...++...|+.-|..+.+.+   |+. .++-.-...|...|+-..|+.=+.......+    +++.+   -...+.+.|
T Consensus        48 lla~~Q~sDALt~yHaAve~d---p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp----DF~~ARiQRg~vllK~G  120 (504)
T KOG0624|consen   48 LLARGQLSDALTHYHAAVEGD---PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP----DFMAARIQRGVVLLKQG  120 (504)
T ss_pred             HHHhhhHHHHHHHHHHHHcCC---chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc----cHHHHHHHhchhhhhcc
Confidence            445566666666666665444   222 2222233455566666666666666654422    22221   123456667


Q ss_pred             ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 015329          130 MIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVM  209 (409)
Q Consensus       130 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  209 (409)
                      .++.|..=|+..++..  |+..+-   ..++.+.-..+                 ........+..+...|+...|+...
T Consensus       121 ele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~-----------------e~~~l~~ql~s~~~~GD~~~ai~~i  178 (504)
T KOG0624|consen  121 ELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQ-----------------EHWVLVQQLKSASGSGDCQNAIEMI  178 (504)
T ss_pred             cHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHH-----------------HHHHHHHHHHHHhcCCchhhHHHHH
Confidence            7777777777666543  211110   00000000000                 0001111223334445555555555


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 015329          210 VEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP  289 (409)
Q Consensus       210 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p  289 (409)
                      ..+++..+ -|...|..-..+|...|++..|+.=++...+.. ..++.++--+-..+...|+.+.++...++-++.  .|
T Consensus       179 ~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dp  254 (504)
T KOG0624|consen  179 THLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DP  254 (504)
T ss_pred             HHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Cc
Confidence            55554322 244444444455555555555554444443332 223333334444444555555555544444433  22


Q ss_pred             CHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 015329          290 DEVT----YNLV---------IKGFCRSGHLDMAKKVYSAMLGRRLMPNR---KIYQTMIHYLCQEGDFNLAYIMCKDSM  353 (409)
Q Consensus       290 ~~~~----~~~l---------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~  353 (409)
                      |...    |..|         +......+++-++.+-.+...+.......   ..+..+-.++...|++.+|++...+.+
T Consensus       255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL  334 (504)
T KOG0624|consen  255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL  334 (504)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence            2211    1000         01112334444444444444443211111   122233334444555556655555555


Q ss_pred             hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          354 KKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       354 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      +.. +.|..++.--..+|.-...++.|+.=++...+.++.+
T Consensus       335 ~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn  374 (504)
T KOG0624|consen  335 DID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN  374 (504)
T ss_pred             hcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence            432 2234455555555555555555555555555554433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.75  E-value=4.5e-06  Score=67.41  Aligned_cols=119  Identities=8%  Similarity=0.023  Sum_probs=66.9

Q ss_pred             cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCC--HHHH
Q 015329          234 DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG-FCRSGH--LDMA  310 (409)
Q Consensus       234 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~--~~~a  310 (409)
                      .++.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence            444455555555555443 445566666666666666666666666666555422 44555555554 244454  3666


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          311 KKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       311 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      .+++++..+.+.. +...+..+...+...|++++|...|+++++.
T Consensus       130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6666666655433 4455555566666666666666666666554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.75  E-value=1.4e-05  Score=77.51  Aligned_cols=170  Identities=6%  Similarity=0.061  Sum_probs=114.1

Q ss_pred             CccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHH
Q 015329           78 ENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAAL  157 (409)
Q Consensus        78 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  157 (409)
                      .+...+..|+..+...+++++|.++.+......+. ...+|-.+...+.+.++.+.+.-+  .+               +
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l   90 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NL---------------I   90 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hh---------------h
Confidence            34466888889988999999999999977665444 334444344477777776666555  22               2


Q ss_pred             HHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 015329          158 KVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRP  237 (409)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~  237 (409)
                      .......++..+..+...+..-   .-+...+..+..+|-+.|+.+++..+|+++.+.... |..+.|.+...|... +.
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hH
Confidence            2233333443344444333221   124457778888888999999999999999887744 788888888888888 88


Q ss_pred             hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329          238 EIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  285 (409)
                      ++|++++.+....               +...+++.++.++|.++...
T Consensus       166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~  198 (906)
T PRK14720        166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY  198 (906)
T ss_pred             HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence            8888888777654               45555666666666666654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.75  E-value=5.3e-05  Score=77.01  Aligned_cols=302  Identities=11%  Similarity=0.016  Sum_probs=185.5

Q ss_pred             HHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC--C----CCCH--HhHHHHHHHH
Q 015329           89 RLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYG--C----KRTV--KSLNAALKVL  160 (409)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~----~~~~--~~~~~ll~~~  160 (409)
                      .+...|+++.+..+++.+.......+..........+...|+++++...+....+.-  .    .+..  .....+...+
T Consensus       383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~  462 (903)
T PRK04841        383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA  462 (903)
T ss_pred             HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence            344567777777777665321111123333345556678899999999998875421  0    1111  1222233455


Q ss_pred             HccCCHHHHHHHHHhcCccCCCCc---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHH
Q 015329          161 TESRDLKAIQAFLMEVPEKFHIQF---DIFSFNIVIKAFCEMGILDKAYLVMVEMQKL----GVK-PDVITYTTLISAFY  232 (409)
Q Consensus       161 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll~~~~  232 (409)
                      ...|+++.+...+++.........   .....+.+...+...|+++.|...+.+....    |.. ....++..+...+.
T Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~  542 (903)
T PRK04841        463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF  542 (903)
T ss_pred             HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence            678999999988876543211111   1234566677788899999999999888742    111 11234455667788


Q ss_pred             HcCChhhHHHHHHHHHhc----CCC--C-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCc--CHHHHHHHHHHH
Q 015329          233 KDNRPEIGNGLWNLMVCK----GCF--P-NLATFNVRIQHLVNKRRSWQANKLMGLMQRFG--IEP--DEVTYNLVIKGF  301 (409)
Q Consensus       233 ~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~p--~~~~~~~li~~~  301 (409)
                      ..|++++|...+++....    +..  + ....+..+...+...|++++|...+.+.....  ..+  ....+..+...+
T Consensus       543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  622 (903)
T PRK04841        543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS  622 (903)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence            899999999998876542    211  1 22334455566777899999999998875431  112  233455566678


Q ss_pred             HhcCCHHHHHHHHHHHHhC--CCCCCHH--HH--HHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 015329          302 CRSGHLDMAKKVYSAMLGR--RLMPNRK--IY--QTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS---VDTISALLEGLK  372 (409)
Q Consensus       302 ~~~g~~~~a~~~~~~m~~~--~~~p~~~--~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~  372 (409)
                      ...|+.++|.+.++.....  .......  ..  ...+..+...|+.+.|.+++...........   ...+..+..++.
T Consensus       623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~  702 (903)
T PRK04841        623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI  702 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence            8899999999999887543  1111111  10  1122444568999999998876544221111   112345668889


Q ss_pred             hCCChHHHHHHHHHHHhc
Q 015329          373 KNNQPCKANTIMALVQRR  390 (409)
Q Consensus       373 ~~g~~~~a~~~~~~~~~~  390 (409)
                      ..|+.++|...+++....
T Consensus       703 ~~g~~~~A~~~l~~al~~  720 (903)
T PRK04841        703 LLGQFDEAEIILEELNEN  720 (903)
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            999999999999988754

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.73  E-value=7.6e-05  Score=69.32  Aligned_cols=206  Identities=12%  Similarity=0.098  Sum_probs=140.9

Q ss_pred             CCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC-CCCCHHhHH
Q 015329           76 VIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYG-CKRTVKSLN  154 (409)
Q Consensus        76 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~  154 (409)
                      +..|...|..+.-++.+.|+++.+.+.|++....-.. ....|..+...|...|.-..|+.+++.-.... -++++..+-
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            5568888999999999999999999999998755333 56778889999999999999999998865432 123344444


Q ss_pred             HHHHHHHcc-CCHHHHHHHHHhcCccCCC---CcCHHHHHHHHHHHHhcC-----------ChhHHHHHHHHHHhCCC-C
Q 015329          155 AALKVLTES-RDLKAIQAFLMEVPEKFHI---QFDIFSFNIVIKAFCEMG-----------ILDKAYLVMVEMQKLGV-K  218 (409)
Q Consensus       155 ~ll~~~~~~-~~~~~a~~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~m~~~g~-~  218 (409)
                      ..-..|.+. +..+++..+-.......+-   ......|..+.-+|...-           ...++++.+++..+.+. .
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d  477 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD  477 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            444445443 4445555554433221111   112344555554554321           24577888888887554 3


Q ss_pred             CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329          219 PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQR  284 (409)
Q Consensus       219 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  284 (409)
                      |+...|-.+  -|+..++.+.|.+..++..+.+-.-+...|..+...+...+++.+|+++.+...+
T Consensus       478 p~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~  541 (799)
T KOG4162|consen  478 PLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE  541 (799)
T ss_pred             chHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            444333333  3567889999999999999986677889999998888888999988888876543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.73  E-value=7.9e-06  Score=75.12  Aligned_cols=240  Identities=9%  Similarity=-0.034  Sum_probs=186.4

Q ss_pred             CCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHH
Q 015329           77 IENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAA  156 (409)
Q Consensus        77 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  156 (409)
                      +|--..-..+...+...|-...|..+++.+         ..|..+|.+|...|+..+|..+..+..++  +||...|..+
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L  463 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL  463 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence            333344556778888899999999999876         35677899999999999999999998873  7899999999


Q ss_pred             HHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 015329          157 LKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNR  236 (409)
Q Consensus       157 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~  236 (409)
                      .+......-+++|..+.+....+        .-..+.....+.+++.++.+.|+.-.+.+. .-..+|-.+.-+..+.++
T Consensus       464 GDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  464 GDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEK  534 (777)
T ss_pred             hhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhh
Confidence            99887777779999998665433        222233334457899999999998887543 256788888888889999


Q ss_pred             hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015329          237 PEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSA  316 (409)
Q Consensus       237 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  316 (409)
                      +..|.+.|..-.... +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.+
T Consensus       535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r  612 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR  612 (777)
T ss_pred             hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence            999999999887752 4467899999999999999999999999999887 33666777777788899999999999998


Q ss_pred             HHhCC-CCCCHHHHHHHHHHHHH
Q 015329          317 MLGRR-LMPNRKIYQTMIHYLCQ  338 (409)
Q Consensus       317 m~~~~-~~p~~~~~~~li~~~~~  338 (409)
                      +.... ..-|..+...++....+
T Consensus       613 ll~~~~~~~d~~vl~~iv~~~~~  635 (777)
T KOG1128|consen  613 LLDLRKKYKDDEVLLIIVRTVLE  635 (777)
T ss_pred             HHHhhhhcccchhhHHHHHHHHh
Confidence            87651 12255555555555443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.72  E-value=6.4e-06  Score=66.51  Aligned_cols=124  Identities=14%  Similarity=0.065  Sum_probs=67.6

Q ss_pred             cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--HhHH
Q 015329          269 KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYL-CQEGD--FNLA  345 (409)
Q Consensus       269 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a  345 (409)
                      .++.+++...++...+.+. .|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence            4444555555555544432 25555566666666666666666666665555322 444555555542 44444  3566


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          346 YIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       346 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      .+++++.++.+ +-+...+..+...+.+.|++++|+..|+++.+..++.+
T Consensus       130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            66666655553 33455555555666666666666666666665555543

>PLN02789 farnesyltranstransferase

Probab=98.72  E-value=1.9e-05  Score=68.54  Aligned_cols=213  Identities=11%  Similarity=-0.005  Sum_probs=123.0

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329          153 LNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMG-ILDKAYLVMVEMQKLGVKPDVITYTTLISA  230 (409)
Q Consensus       153 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~  230 (409)
                      +..+-..+...+..+.|.....+....   .|+ ..+|+.--..+...| ++++++..++++.+...+ +..+|+.....
T Consensus        40 ~~~~ra~l~~~e~serAL~lt~~aI~l---nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~  115 (320)
T PLN02789         40 MDYFRAVYASDERSPRALDLTADVIRL---NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL  115 (320)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence            344444455556667777777655443   333 334555555555566 467777777777766544 55556655444


Q ss_pred             HHHcCCh--hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc---C
Q 015329          231 FYKDNRP--EIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS---G  305 (409)
Q Consensus       231 ~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g  305 (409)
                      +.+.|+.  ++++.+++.+.+.. +-|..+|+...-++...|+++++++.++++.+.++. |...|+.....+.+.   |
T Consensus       116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~  193 (320)
T PLN02789        116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG  193 (320)
T ss_pred             HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc
Confidence            4555542  55666776666653 446667777777777777777777777777766544 555555555444443   2


Q ss_pred             CH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015329          306 HL----DMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE----GDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKK  373 (409)
Q Consensus       306 ~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~  373 (409)
                      ..    ++..++..+++..... |...|+.+...+...    +...+|.+.+.+..+.+ ..+...+..|+..|..
T Consensus       194 ~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~  267 (320)
T PLN02789        194 GLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE  267 (320)
T ss_pred             cccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence            22    3455555555554332 555666666666552    33455666666655543 3455566666666664

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=1.3e-05  Score=64.92  Aligned_cols=155  Identities=14%  Similarity=0.171  Sum_probs=79.6

Q ss_pred             HHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----
Q 015329          228 ISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCR----  303 (409)
Q Consensus       228 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----  303 (409)
                      ...|++.|++++|++......      +......=+..+.+..+.+-|...+++|.+-.   +..|.+-|..++.+    
T Consensus       115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g  185 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG  185 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence            344555666666665554411      22222222334445555666666666665431   34455555555433    


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH-HHH
Q 015329          304 SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCK-ANT  382 (409)
Q Consensus       304 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~  382 (409)
                      .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++.+.+. .-++.+...++.+-...|...+ ..+
T Consensus       186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r  263 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTER  263 (299)
T ss_pred             chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHH
Confidence            23455666666666542 34566666666666666666666666666666554 3445555555544444444333 334


Q ss_pred             HHHHHHhcCCC
Q 015329          383 IMALVQRRVPH  393 (409)
Q Consensus       383 ~~~~~~~~~~~  393 (409)
                      .+.+++...|.
T Consensus       264 ~l~QLk~~~p~  274 (299)
T KOG3081|consen  264 NLSQLKLSHPE  274 (299)
T ss_pred             HHHHHHhcCCc
Confidence            45555544443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=7.7e-05  Score=71.30  Aligned_cols=300  Identities=13%  Similarity=0.121  Sum_probs=179.5

Q ss_pred             hHHHHhhhhcCChHHHHHHHHHhhcCC-CCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHH
Q 015329           48 PPALVKLKAERDPEKLFQLFKANAHNR-IVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYG  126 (409)
Q Consensus        48 ~~~l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  126 (409)
                      ...+.++...+-|.+-+++++.+.-.+ .+..+...-+.+|-...+..+ .++.+..+.+..-..   +    .+...+.
T Consensus       988 S~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~-trVm~YI~rLdnyDa---~----~ia~iai 1059 (1666)
T KOG0985|consen  988 SVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADR-TRVMEYINRLDNYDA---P----DIAEIAI 1059 (1666)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcCh-HHHHHHHHHhccCCc---h----hHHHHHh
Confidence            345667788888899999999885443 233444455666665555543 445555555442211   1    2445566


Q ss_pred             hcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 015329          127 KAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAY  206 (409)
Q Consensus       127 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~  206 (409)
                      .++-+++|..+|++..     .+....+.|+.-   .+..+.|..+-+..-       ....|..+.++-.+.|.+.+|+
T Consensus      1060 ~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred             hhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHH
Confidence            7778888888888763     344444444442   345566666553221       3457788888888888888887


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 015329          207 LVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFG  286 (409)
Q Consensus       207 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  286 (409)
                      +-|-+.      -|+..|..+++...+.|.+++-.+.+...++..-.|...  +.+|-+|++.++..+..+++.      
T Consensus      1125 eSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~------ 1190 (1666)
T KOG0985|consen 1125 ESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA------ 1190 (1666)
T ss_pred             HHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc------
Confidence            766553      266778888888888888888888877777665555444  467778888877766555432      


Q ss_pred             CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------------CCCCCHHHHHHHHHHHHHcCCHhHHH
Q 015329          287 IEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR--------------------RLMPNRKIYQTMIHYLCQEGDFNLAY  346 (409)
Q Consensus       287 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------------~~~p~~~~~~~li~~~~~~g~~~~a~  346 (409)
                       .||......+.+-|...|.++.|.-+|.....-                    .-..+..+|..+-.+|...+.+.-| 
T Consensus      1191 -gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA- 1268 (1666)
T KOG0985|consen 1191 -GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA- 1268 (1666)
T ss_pred             -CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-
Confidence             344444444555555555555554444321100                    0011344555555555444443322 


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329          347 IMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRR  390 (409)
Q Consensus       347 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  390 (409)
                          +|...++.....-..-++..|-..|-+++.+.+++.....
T Consensus      1269 ----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1269 ----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred             ----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence                2333334455666777888888888888888887765433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.68  E-value=7e-06  Score=68.91  Aligned_cols=189  Identities=10%  Similarity=0.027  Sum_probs=130.6

Q ss_pred             CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HH
Q 015329          147 KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV--IT  223 (409)
Q Consensus       147 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~  223 (409)
                      ......+..+...+...|+++.|...+++......-.|. ...+..+..++.+.|++++|...++++.+.......  .+
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            445667888888999999999999999887655332222 246778889999999999999999999986433222  24


Q ss_pred             HHHHHHHHHHc--------CChhhHHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHH
Q 015329          224 YTTLISAFYKD--------NRPEIGNGLWNLMVCKGCFPNL-ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTY  294 (409)
Q Consensus       224 ~~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~  294 (409)
                      +..+..++.+.        |++++|.+.++.+.+.  .|+. ..+..+... ..   ...      ...        ...
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~~--------~~~  169 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RLA--------GKE  169 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HHH--------HHH
Confidence            55555556554        7788999999999876  3433 232222111 11   000      000        111


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          295 NLVIKGFCRSGHLDMAKKVYSAMLGRRL--MPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       295 ~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      ..+...|.+.|++++|...++...+...  ......+..+..++...|++++|..+++.+...
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            2455678899999999999999887622  123567889999999999999999998886654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.67  E-value=9.4e-05  Score=60.09  Aligned_cols=251  Identities=11%  Similarity=0.023  Sum_probs=162.2

Q ss_pred             HHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHH
Q 015329           88 SRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLK  167 (409)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~  167 (409)
                      +.+.-.|.+..++..-......+.  ....-..+.++|...|.+.....-.   +... .|.......+......-++.+
T Consensus        16 Rn~fY~Gnyq~~ine~~~~~~~~~--~~e~d~y~~raylAlg~~~~~~~eI---~~~~-~~~lqAvr~~a~~~~~e~~~~   89 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKFSSSKT--DVELDVYMYRAYLALGQYQIVISEI---KEGK-ATPLQAVRLLAEYLELESNKK   89 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhhccccc--hhHHHHHHHHHHHHccccccccccc---cccc-CChHHHHHHHHHHhhCcchhH
Confidence            555556888877776665554432  2333334677888888766544332   2221 333344443333333344443


Q ss_pred             HHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 015329          168 AIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLM  247 (409)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m  247 (409)
                      ....-+.+.........+......-...|+..|++++|++......      +......=+..+.+..+.+.|.+.++.|
T Consensus        90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m  163 (299)
T KOG3081|consen   90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM  163 (299)
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333222333333333343334444567999999999999887722      3333333445567788999999999999


Q ss_pred             HhcCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015329          248 VCKGCFPNLATFNVRIQHLVN----KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM  323 (409)
Q Consensus       248 ~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  323 (409)
                      .+-.   +..|.+.+..++.+    .+.+.+|.-+|++|.++- .|+..+.+....++...|++++|..++++.......
T Consensus       164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~  239 (299)
T KOG3081|consen  164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK  239 (299)
T ss_pred             Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            9854   66777767776665    567889999999998742 678999999999999999999999999999988544


Q ss_pred             CCHHHHHHHHHHHHHcCCHhHH-HHHHHHHHhC
Q 015329          324 PNRKIYQTMIHYLCQEGDFNLA-YIMCKDSMKK  355 (409)
Q Consensus       324 p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~~  355 (409)
                       ++.+...+|.+-...|...++ .+.+..+...
T Consensus       240 -dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~  271 (299)
T KOG3081|consen  240 -DPETLANLIVLALHLGKDAEVTERNLSQLKLS  271 (299)
T ss_pred             -CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence             677777777666666665444 4555555443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.67  E-value=2.9e-05  Score=76.45  Aligned_cols=224  Identities=10%  Similarity=0.029  Sum_probs=149.8

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCC---CCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCH-HH
Q 015329          114 REGFIMRIMMLYGKAGMIKHAMDTFYDMHLY-GCK---RTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDI-FS  188 (409)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~  188 (409)
                      +...|-..|......++++.|.+++++.+.. +++   --...|.++++.-...|.-+...++|++..+-.    |+ ..
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc----d~~~V 1532 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC----DAYTV 1532 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc----chHHH
Confidence            4556666777777777777777777776532 111   112456677776666777777777776553321    33 34


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCC--CHhhHHHHHHHH
Q 015329          189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFP--NLATFNVRIQHL  266 (409)
Q Consensus       189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~  266 (409)
                      |..|...|.+.+.+++|.++|+.|.+.-- -....|...+..+.+.++-+.|..++.+..+. ++-  ......-.++.-
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHH
Confidence            77777888888888888888888876422 36677888888888888878888888777664 111  344445555666


Q ss_pred             HhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHhH
Q 015329          267 VNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR--KIYQTMIHYLCQEGDFNL  344 (409)
Q Consensus       267 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~  344 (409)
                      .+.|+.+.+..+|+.......+ -...|+..++.-.+.|+.+.+..+|++....++.|--  ..|...+..=-..|+-..
T Consensus      1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence            6778888888888887766433 5567888888888888888888888888877766533  345555554445565443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=0.00015  Score=61.39  Aligned_cols=161  Identities=11%  Similarity=0.078  Sum_probs=95.9

Q ss_pred             HHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCH
Q 015329           87 VSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDL  166 (409)
Q Consensus        87 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  166 (409)
                      +.-+....++.-|+.+++--...+......+-.-+..++.+.|++++|...|.-+.+.. .++...+-.|.-++.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            44455667888888888876644433222333346778889999999999999987755 56666666666666666777


Q ss_pred             HHHHHHHHhcCcc-------------CCC-----------CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 015329          167 KAIQAFLMEVPEK-------------FHI-----------QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVI  222 (409)
Q Consensus       167 ~~a~~~~~~~~~~-------------~~~-----------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  222 (409)
                      .+|..+-....+.             .+-           .-+..---.+.......-.+++|+++|.+....  .|.-.
T Consensus       108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~  185 (557)
T KOG3785|consen  108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYI  185 (557)
T ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhhh
Confidence            6666655322110             000           000011111222222233567888888887765  24445


Q ss_pred             HHHHHH-HHHHHcCChhhHHHHHHHHHhc
Q 015329          223 TYTTLI-SAFYKDNRPEIGNGLWNLMVCK  250 (409)
Q Consensus       223 ~~~~ll-~~~~~~~~~~~a~~~~~~m~~~  250 (409)
                      ..|.-+ -+|.+..-++-+.+++.-..+.
T Consensus       186 alNVy~ALCyyKlDYydvsqevl~vYL~q  214 (557)
T KOG3785|consen  186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQ  214 (557)
T ss_pred             hhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence            555444 3456667777777887777665

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.61  E-value=0.00038  Score=62.30  Aligned_cols=148  Identities=10%  Similarity=0.072  Sum_probs=113.6

Q ss_pred             HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 015329          256 LATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR-KIYQTMI  333 (409)
Q Consensus       256 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li  333 (409)
                      .-+|...|..-.+...++.|..+|.+..+.+..+ ++..+++++..|| .++.+-|.++|+--.+.  -+|. .--...+
T Consensus       366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~Yl  442 (656)
T KOG1914|consen  366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYL  442 (656)
T ss_pred             ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHH
Confidence            3457777788888888999999999999988777 7788888888776 47889999999876554  2233 3345677


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC---CchhHHHHHHhh
Q 015329          334 HYLCQEGDFNLAYIMCKDSMKKNWVPSV--DTISALLEGLKKNNQPCKANTIMALVQRRVPHF---SSNQLSAFKSIL  406 (409)
Q Consensus       334 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~  406 (409)
                      +-+...++-..+..+|++.+..++.++.  ..|..++.--..-|+...+.++-++.....+..   .......+++.|
T Consensus       443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY  520 (656)
T KOG1914|consen  443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRY  520 (656)
T ss_pred             HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHH
Confidence            7788889999999999999888666554  689999999999999999999998887766622   224444555544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.60  E-value=5.6e-05  Score=73.41  Aligned_cols=232  Identities=13%  Similarity=0.085  Sum_probs=145.5

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHH-hHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHH
Q 015329          114 REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVK-SLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIV  192 (409)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  192 (409)
                      ....+..|+..|...+++++|.++.+...+.  .|+.. .|-.+...+.+.++.+.+..+                  .+
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------~~   89 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------NL   89 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------hh
Confidence            4667788999999999999999999977665  44443 333333355555553332222                  34


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 015329          193 IKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRS  272 (409)
Q Consensus       193 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  272 (409)
                      +.......++.-+..+...|...+  -+...+-.+..+|-+.|+.+++..+|+++.+.. +-|+...|.+...|... +.
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence            444444555544455555555543  245577888999999999999999999999987 67888999999999999 99


Q ss_pred             hHHHHHHHHHHHcCCCcCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHhHHH
Q 015329          273 WQANKLMGLMQRFGIEPDEVTYNLVIKGF-----CRSGHLDMAKKVYSAMLGR-RLMPNRKIYQTMIHYLCQEGDFNLAY  346 (409)
Q Consensus       273 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~-----~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~  346 (409)
                      ++|..++.+....-+  +..-|+.+...+     ....+.+.-.++.+.+... |..--..++-.+...|-..++++++.
T Consensus       166 ~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i  243 (906)
T PRK14720        166 EKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI  243 (906)
T ss_pred             HHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence            999999988765411  111112111111     1122333333444444333 33333444455556666677777777


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329          347 IMCKDSMKKNWVPSVDTISALLEGLK  372 (409)
Q Consensus       347 ~~~~~m~~~~~~~~~~~~~~l~~~~~  372 (409)
                      .+++..++.. +-|.....-++.+|.
T Consensus       244 ~iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        244 YILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHhcC-CcchhhHHHHHHHHH
Confidence            7777777654 345555566666554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.59  E-value=1.2e-05  Score=72.05  Aligned_cols=255  Identities=10%  Similarity=-0.023  Sum_probs=180.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhc
Q 015329          121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEM  199 (409)
Q Consensus       121 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~  199 (409)
                      ...-+.+.|++.+|.-.|+.....+ +-+...|..|.......++-..++.-+++..+   +.| +....-.|.-.|...
T Consensus       291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~---LdP~NleaLmaLAVSytNe  366 (579)
T KOG1125|consen  291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLE---LDPTNLEALMALAVSYTNE  366 (579)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh---cCCccHHHHHHHHHHHhhh
Confidence            3445678899999999999987765 55778999999999998888777776655433   244 466677788888888


Q ss_pred             CChhHHHHHHHHHHhCCC------C--CCHHHHHHHHHHHHHcCChhhHHHHHHHHH-hcCCCCCHhhHHHHHHHHHhcC
Q 015329          200 GILDKAYLVMVEMQKLGV------K--PDVITYTTLISAFYKDNRPEIGNGLWNLMV-CKGCFPNLATFNVRIQHLVNKR  270 (409)
Q Consensus       200 g~~~~a~~~~~~m~~~g~------~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~  270 (409)
                      |.-..|...|+......+      .  ++...-..  ..+..........++|-++. ..+..+|+.....|--.|.-.|
T Consensus       367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~  444 (579)
T KOG1125|consen  367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG  444 (579)
T ss_pred             hhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence            988899998888754321      0  01110000  12222223334445555544 4454577788888888888899


Q ss_pred             CHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHH
Q 015329          271 RSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR-KIYQTMIHYLCQEGDFNLAYIMC  349 (409)
Q Consensus       271 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~  349 (409)
                      ++++|.+.|+..+..... |..+||-|-..++...+.++|+..|.+.++.  +|+. .+.-.|.-+|...|.+++|.+.|
T Consensus       445 efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl  521 (579)
T KOG1125|consen  445 EFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL  521 (579)
T ss_pred             HHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence            999999999999887433 7889999999999999999999999999877  4443 23444666788999999999888


Q ss_pred             HHHHh---C------CCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 015329          350 KDSMK---K------NWVPSVDTISALLEGLKKNNQPCKANTIM  384 (409)
Q Consensus       350 ~~m~~---~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  384 (409)
                      -+.+.   +      +-.++...|..|-.++.-.++.|.+.++.
T Consensus       522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence            66543   2      11234578888888888888888666554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.59  E-value=0.00068  Score=64.32  Aligned_cols=189  Identities=12%  Similarity=0.037  Sum_probs=96.0

Q ss_pred             hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHH--HhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329           56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSR--LAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH  133 (409)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  133 (409)
                      ..+++..|+.......+..   |+.. |..++.+  +.+.|+.++|..+++.....+.. +..+...+-.+|.+.++.++
T Consensus        21 d~~qfkkal~~~~kllkk~---Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKH---PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHC---CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence            4456666666666665554   3322 2222222  24556666666666555544333 55555555566666666666


Q ss_pred             HHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCH----HHHHHHHH-----------------------------------
Q 015329          134 AMDTFYDMHLYGCKRTVKSLNAALKVLTESRDL----KAIQAFLM-----------------------------------  174 (409)
Q Consensus       134 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~-----------------------------------  174 (409)
                      |..+|++....  .|+..-...+..+|++.+.+    ..+.+++.                                   
T Consensus        96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA  173 (932)
T KOG2053|consen   96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALA  173 (932)
T ss_pred             HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence            66666665543  35555555555566655555    33333332                                   


Q ss_pred             -----hcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 015329          175 -----EVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMV-EMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMV  248 (409)
Q Consensus       175 -----~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  248 (409)
                           .+.++.|.--+..-.......+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++.
T Consensus       174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll  253 (932)
T KOG2053|consen  174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL  253 (932)
T ss_pred             HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence                 222222210011112222233344556666666662 22222222233444455666677777777777777777


Q ss_pred             hcC
Q 015329          249 CKG  251 (409)
Q Consensus       249 ~~~  251 (409)
                      ..|
T Consensus       254 ~k~  256 (932)
T KOG2053|consen  254 EKG  256 (932)
T ss_pred             HhC
Confidence            765

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.58  E-value=3.7e-05  Score=62.34  Aligned_cols=123  Identities=13%  Similarity=-0.018  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329          189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN  268 (409)
Q Consensus       189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  268 (409)
                      .+..++...+.|++..|...|.+..... .+|..+|+.+.-+|.+.|+.++|..-|.+..+.- .-+...++.+...|.-
T Consensus       103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L  180 (257)
T COG5010         103 LAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLL  180 (257)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHH
Confidence            3334444444444444444444444332 2244444444444444444444444444444431 2233334444444444


Q ss_pred             cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015329          269 KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVY  314 (409)
Q Consensus       269 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  314 (409)
                      .|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus       181 ~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         181 RGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             cCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence            44444444444444433322 3333333444444444444444443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=0.00055  Score=61.96  Aligned_cols=127  Identities=13%  Similarity=0.147  Sum_probs=89.2

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHH--------HHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCH
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMG--------LMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR--RLMPNR  326 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~  326 (409)
                      ...-.+++.....|+++.|.+++.        .+.+.+..|.  +...++..+.+.++.+.|..+++.....  .-.+..
T Consensus       377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s  454 (652)
T KOG2376|consen  377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS  454 (652)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence            344556677778999999999999        6666665554  4456677777777777777777665432  111122


Q ss_pred             HH----HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 015329          327 KI----YQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALV  387 (409)
Q Consensus       327 ~~----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  387 (409)
                      ..    +..+...-.+.|+.++|..+++++.+.. ++|..+...++.+|++. +++.|..+-+.+
T Consensus       455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence            22    3333334457799999999999999865 78999999999999886 677777765543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.56  E-value=1.8e-05  Score=64.10  Aligned_cols=165  Identities=8%  Similarity=-0.086  Sum_probs=127.7

Q ss_pred             ccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHH
Q 015329           79 NKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALK  158 (409)
Q Consensus        79 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  158 (409)
                      |... ..+-..+...|+-+....+........ +.+.......+....+.|++..|+..|++..... ++|..+|+.+.-
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga  142 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA  142 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence            4444 556677788888888888777755332 3356677778888999999999999999987765 778889999999


Q ss_pred             HHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 015329          159 VLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPE  238 (409)
Q Consensus       159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~  238 (409)
                      +|.+.|+++.|..-|.+..+-.+-  +....|.+.-.|.-.|+++.|..++......+.. |..+-..+.......|+++
T Consensus       143 aldq~Gr~~~Ar~ay~qAl~L~~~--~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~  219 (257)
T COG5010         143 ALDQLGRFDEARRAYRQALELAPN--EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFR  219 (257)
T ss_pred             HHHHccChhHHHHHHHHHHHhccC--CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChH
Confidence            999999999988888766444322  4556788888888889999999999988877654 6777777888888899999


Q ss_pred             hHHHHHHHHHh
Q 015329          239 IGNGLWNLMVC  249 (409)
Q Consensus       239 ~a~~~~~~m~~  249 (409)
                      +|..+...-..
T Consensus       220 ~A~~i~~~e~~  230 (257)
T COG5010         220 EAEDIAVQELL  230 (257)
T ss_pred             HHHhhcccccc
Confidence            99887765544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.55  E-value=4.2e-06  Score=63.90  Aligned_cols=97  Identities=8%  Similarity=-0.046  Sum_probs=55.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 015329          296 LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN  375 (409)
Q Consensus       296 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g  375 (409)
                      .+...+...|++++|...|+........ +...|..+..++...|++++|...|+...+.+ +.+...+..+..++...|
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence            3445555566666666666665544322 45555555666666666666666666655543 445555556666666666


Q ss_pred             ChHHHHHHHHHHHhcCCCC
Q 015329          376 QPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       376 ~~~~a~~~~~~~~~~~~~~  394 (409)
                      +.++|++.++...+..|+.
T Consensus       107 ~~~eAi~~~~~Al~~~p~~  125 (144)
T PRK15359        107 EPGLAREAFQTAIKMSYAD  125 (144)
T ss_pred             CHHHHHHHHHHHHHhCCCC
Confidence            6666666666666555544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.53  E-value=0.00039  Score=58.71  Aligned_cols=267  Identities=11%  Similarity=-0.012  Sum_probs=144.6

Q ss_pred             CCCChHHHHh---hhhcCChHHHHHHHHHhhcCCCCCCccchH-HHHHHHHhcCCCchhHHHHHHHhhhCCCCCC--hhH
Q 015329           44 KPLEPPALVK---LKAERDPEKLFQLFKANAHNRIVIENKYAF-EDTVSRLAGARRFDYIEHLLEHQKSLPQGRR--EGF  117 (409)
Q Consensus        44 ~~~~~~~l~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~  117 (409)
                      +..|..+.++   +...|+...|+.-|....+..   ||-..- ..-...+.+.|.+++|..=|+.+....+...  ...
T Consensus        69 p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK---pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea  145 (504)
T KOG0624|consen   69 PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK---PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEA  145 (504)
T ss_pred             chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC---ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence            3344444443   334566666777777666554   554321 2234567899999999999999987755322  111


Q ss_pred             H------------HHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC
Q 015329          118 I------------MRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD  185 (409)
Q Consensus       118 ~------------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  185 (409)
                      +            ...+..+.-.|+...|++....+++.. +-|...|..-..+|...|++..|..=++... +.. .-+
T Consensus       146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as-kLs-~Dn  222 (504)
T KOG0624|consen  146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQAS-KLS-QDN  222 (504)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcc-ccc
Confidence            1            123445566788888888888887653 4566677777788888888877766553331 111 124


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH----H---------HHHHHHcCChhhHHHHHHHHHhcCC
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTT----L---------ISAFYKDNRPEIGNGLWNLMVCKGC  252 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~----l---------l~~~~~~~~~~~a~~~~~~m~~~~~  252 (409)
                      ..++--+-..+...|+.+.++...++.++.  .||...+-.    |         +......++|.++++..+...+...
T Consensus       223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep  300 (504)
T KOG0624|consen  223 TEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP  300 (504)
T ss_pred             hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence            555556667777888888888888777764  344332211    1         0111223334444444443333321


Q ss_pred             CCCH---hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          253 FPNL---ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       253 ~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      ....   ..+..+-.++...+++.+|+..-.+.++.  .| |+.++.--..+|.-..+++.|+.-|+...+.
T Consensus       301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             cccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            1111   12223333444445555555555554443  22 2444444444555445555555555554443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=0.00023  Score=63.51  Aligned_cols=336  Identities=13%  Similarity=0.063  Sum_probs=221.2

Q ss_pred             hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329           54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH  133 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  133 (409)
                      +...|+++.|+..|...+...  ++|...|..-..+++..|++++|.+=-.+..+..+. =..-|.....++.-.|++++
T Consensus        12 a~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~e   88 (539)
T KOG0548|consen   12 AFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYEE   88 (539)
T ss_pred             hcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHHH
Confidence            456799999999999999887  568888999999999999999998877776665432 25667788888899999999


Q ss_pred             HHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHH------hcCccC--CCCcCHHHHHHHHHHHHhc------
Q 015329          134 AMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLM------EVPEKF--HIQFDIFSFNIVIKAFCEM------  199 (409)
Q Consensus       134 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~------~~~~~~--~~~~~~~~~~~ll~~~~~~------  199 (409)
                      |+.-|.+-++.. +-+...++-+..++...  . .+.+.|.      .+....  ........|..++..+-+.      
T Consensus        89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~  164 (539)
T KOG0548|consen   89 AILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL  164 (539)
T ss_pred             HHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence            999999987764 44555677777777211  1 1111110      000000  0000111233333322211      


Q ss_pred             ----CChhHHHHHHHH-----HHhCC-------CCC------------C----------HHHHHHHHHHHHHcCChhhHH
Q 015329          200 ----GILDKAYLVMVE-----MQKLG-------VKP------------D----------VITYTTLISAFYKDNRPEIGN  241 (409)
Q Consensus       200 ----g~~~~a~~~~~~-----m~~~g-------~~~------------~----------~~~~~~ll~~~~~~~~~~~a~  241 (409)
                          .++..+.-++..     +...|       ..|            |          ..-...+.++..+..+++.+.
T Consensus       165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~  244 (539)
T KOG0548|consen  165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI  244 (539)
T ss_pred             ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence                011111111110     00011       111            0          112456777778888899999


Q ss_pred             HHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHH-------HHHHhcCCHHHHHHHH
Q 015329          242 GLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVI-------KGFCRSGHLDMAKKVY  314 (409)
Q Consensus       242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li-------~~~~~~g~~~~a~~~~  314 (409)
                      +-+....+..  -+..-++..-.+|...|.+.++...-....+.|.. ...-|+.+.       .+|.+.++++.+...|
T Consensus       245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~  321 (539)
T KOG0548|consen  245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY  321 (539)
T ss_pred             HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence            9998888764  46666677778899999888887777776666543 333333333       3566677888999988


Q ss_pred             HHHHhCCCCCCHHHHH-------------------------HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329          315 SAMLGRRLMPNRKIYQ-------------------------TMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLE  369 (409)
Q Consensus       315 ~~m~~~~~~p~~~~~~-------------------------~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~  369 (409)
                      .+.......|+...-.                         .-...+.+.|++..|...|.++++.. +-|...|..-.-
T Consensus       322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa  400 (539)
T KOG0548|consen  322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA  400 (539)
T ss_pred             HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence            8876654444332211                         11345678899999999999999987 778889999999


Q ss_pred             HHHhCCChHHHHHHHHHHHhcCCCCCchhHH
Q 015329          370 GLKKNNQPCKANTIMALVQRRVPHFSSNQLS  400 (409)
Q Consensus       370 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  400 (409)
                      +|.+.|.+..|.+=.+...+.+|++....++
T Consensus       401 c~~kL~~~~~aL~Da~~~ieL~p~~~kgy~R  431 (539)
T KOG0548|consen  401 CYLKLGEYPEALKDAKKCIELDPNFIKAYLR  431 (539)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCchHHHHHHH
Confidence            9999999999999888888888777655443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.50  E-value=0.00013  Score=70.02  Aligned_cols=147  Identities=11%  Similarity=0.064  Sum_probs=119.5

Q ss_pred             CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHH
Q 015329          218 KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLV  297 (409)
Q Consensus       218 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l  297 (409)
                      ..+...+-.|.....+.|.+++|+.+|+...+.. +-+......+...+.+.+++++|...+++....... +......+
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~  160 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE  160 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence            3468888889999999999999999999998863 445667778888999999999999999999888543 66777788


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329          298 IKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALL  368 (409)
Q Consensus       298 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~  368 (409)
                      ..++.+.|++++|..+|++....+.. +..++..+..++-..|+.++|...|+...+.. .+....|+.++
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~  229 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL  229 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence            88899999999999999999985322 47788889999999999999999999987753 45555555544

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=0.00082  Score=64.69  Aligned_cols=303  Identities=11%  Similarity=0.116  Sum_probs=170.1

Q ss_pred             CCCCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCC---------
Q 015329           40 PLVDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLP---------  110 (409)
Q Consensus        40 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------  110 (409)
                      ++....-+..++..-+-.-++.++.++.+++...+  .|+      +...+...+-+++|..+|+......         
T Consensus      1016 ~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD--a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~ 1087 (1666)
T KOG0985|consen 1016 VFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD--APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIEN 1087 (1666)
T ss_pred             ccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC--chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            34444444455544444457788888888876555  222      3334445555666666665532110         


Q ss_pred             ------------CCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCc
Q 015329          111 ------------QGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPE  178 (409)
Q Consensus       111 ------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  178 (409)
                                  .-..+.+|..+..+-.+.|.+.+|++-|-+.      -|+..|..+++...+.|.+++..+++ .|.+
T Consensus      1088 i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL-~MaR 1160 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL-LMAR 1160 (1666)
T ss_pred             hhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH-HHHH
Confidence                        0112445555555555555555555555333      23344555666666666666666655 4434


Q ss_pred             cCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhh
Q 015329          179 KFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLAT  258 (409)
Q Consensus       179 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  258 (409)
                      +..-.|.+.  ..|+-+|++.+++.+.++++.       -|+......+.+-|...|.++.|.-+|.         ++.-
T Consensus      1161 kk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN 1222 (1666)
T KOG0985|consen 1161 KKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSN 1222 (1666)
T ss_pred             HhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------Hhhh
Confidence            433333332  245555666655555443321       2455555555555555565555555544         2334


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329          259 FNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ  338 (409)
Q Consensus       259 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  338 (409)
                      |..+...+...|++..|.+.-++.      -+..||..+-.+|...+.+.-|     .|....+.....-...++.-|-.
T Consensus      1223 ~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQD 1291 (1666)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHh
Confidence            556666666677777766655443      2567777777777766555433     33333444566678889999999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015329          339 EGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQ  388 (409)
Q Consensus       339 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  388 (409)
                      .|-+++...+++..+... +.....|+-|.-.|.+- ++++..+-++..-
T Consensus      1292 rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFw 1339 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFW 1339 (1666)
T ss_pred             cCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence            999999999888654321 23344666666666654 5666666665544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.46  E-value=0.00021  Score=63.17  Aligned_cols=185  Identities=11%  Similarity=0.051  Sum_probs=132.5

Q ss_pred             cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 015329          184 FDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRI  263 (409)
Q Consensus       184 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  263 (409)
                      |+...+...+.+......-..+..++.+..+.  .-...-|..-+. +...|++++|+..++.+... .+-|...+....
T Consensus       272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~  347 (484)
T COG4783         272 PDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAG  347 (484)
T ss_pred             ccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHH
Confidence            44555555555444443333333333333331  112333444433 45689999999999998876 355667777788


Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329          264 QHLVNKRRSWQANKLMGLMQRFGIEPD-EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF  342 (409)
Q Consensus       264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  342 (409)
                      ..+.+.++.++|.+.++++...  .|+ ....-.+..+|.+.|++.+|..++++....... |+..|..|.++|...|+.
T Consensus       348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCch
Confidence            8999999999999999999887  455 555667788999999999999999998876433 888999999999999998


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          343 NLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       343 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      .++.....+                  +|...|+++.|+..+....+....
T Consensus       425 ~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~  457 (484)
T COG4783         425 AEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKL  457 (484)
T ss_pred             HHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccC
Confidence            888876654                  456678888888888888776643

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.45  E-value=4e-05  Score=58.52  Aligned_cols=93  Identities=10%  Similarity=-0.147  Sum_probs=52.4

Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 015329          261 VRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG  340 (409)
Q Consensus       261 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  340 (409)
                      .....+...|++++|...|+........ +...|..+..++...|++++|...|+........ +...+..+..++...|
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence            3444555566666666666665554322 4555555555666666666666666666554322 4555555555666666


Q ss_pred             CHhHHHHHHHHHHhC
Q 015329          341 DFNLAYIMCKDSMKK  355 (409)
Q Consensus       341 ~~~~a~~~~~~m~~~  355 (409)
                      +.++|...|+..++.
T Consensus       107 ~~~eAi~~~~~Al~~  121 (144)
T PRK15359        107 EPGLAREAFQTAIKM  121 (144)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            666666666655554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.45  E-value=0.00024  Score=67.21  Aligned_cols=223  Identities=11%  Similarity=0.045  Sum_probs=112.7

Q ss_pred             HhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHH--HccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChh
Q 015329          126 GKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVL--TESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILD  203 (409)
Q Consensus       126 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  203 (409)
                      ...+++..|.+-..++.+.  .|+.. |..++.++  .+.|..++|..+++.. ...+.. |..|...+-..|...|+.+
T Consensus        20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~~~~-D~~tLq~l~~~y~d~~~~d   94 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEAL-YGLKGT-DDLTLQFLQNVYRDLGKLD   94 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhh-ccCCCC-chHHHHHHHHHHHHHhhhh
Confidence            4566777777777776654  34432 33344443  4556666666666443 222222 6666777777777777777


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC----------Hh
Q 015329          204 KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRR----------SW  273 (409)
Q Consensus       204 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~  273 (409)
                      +|..+|++....  .|+..-...+..+|.+.+.+.+-.++--+|-+. .+-+...|=++++.+...-.          ..
T Consensus        95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~  171 (932)
T KOG2053|consen   95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA  171 (932)
T ss_pred             HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence            777777777654  355555666666676666665433333333321 23344444444444443211          11


Q ss_pred             HHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329          274 QANKLMGLMQRFG-IEPDEVTYNLVIKGFCRSGHLDMAKKVYS-AMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKD  351 (409)
Q Consensus       274 ~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  351 (409)
                      -|.+.++.+.+.+ ---+..-...-.......|++++|++++. ...+.-..-+...-+.-+..+...+++.+..++..+
T Consensus       172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~  251 (932)
T KOG2053|consen  172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR  251 (932)
T ss_pred             HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            2334444443332 11111111222233345566666666663 222222222333344455555666666666666666


Q ss_pred             HHhCC
Q 015329          352 SMKKN  356 (409)
Q Consensus       352 m~~~~  356 (409)
                      +..+|
T Consensus       252 Ll~k~  256 (932)
T KOG2053|consen  252 LLEKG  256 (932)
T ss_pred             HHHhC
Confidence            66554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.44  E-value=1.2e-05  Score=60.91  Aligned_cols=104  Identities=11%  Similarity=0.001  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329          291 EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEG  370 (409)
Q Consensus       291 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~  370 (409)
                      ......+...+...|++++|.+.++.+...+. .+...+..+...+...|++++|..+++...+.+ +.+...+..+...
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~   94 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC   94 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence            34455566666777777777777777766532 255666777777777777777777777766654 4556666667777


Q ss_pred             HHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329          371 LKKNNQPCKANTIMALVQRRVPHFSS  396 (409)
Q Consensus       371 ~~~~g~~~~a~~~~~~~~~~~~~~~~  396 (409)
                      +...|++++|.+.++...+..|....
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        95 LLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             HHHcCCHHHHHHHHHHHHHhccccch
Confidence            77777777777777777777665543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=0.00041  Score=56.07  Aligned_cols=188  Identities=13%  Similarity=0.092  Sum_probs=131.5

Q ss_pred             cCCHHHHHHHHHhcCccC--C-CCcCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 015329          163 SRDLKAIQAFLMEVPEKF--H-IQFDIFS-FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPE  238 (409)
Q Consensus       163 ~~~~~~a~~~~~~~~~~~--~-~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~  238 (409)
                      ..+.+++.+++.++....  | ..++..+ |.-+.-+....|+.+.|..+++.+...-.. +..+-..-..-+-..|.++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchh
Confidence            455688888877664432  2 4455544 666667778889999999999998875321 2222211122234478899


Q ss_pred             hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329          239 IGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAML  318 (409)
Q Consensus       239 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  318 (409)
                      +|+++++.+.+.+ +.|..++---+...-..|+..+|++-+.+..+.-+ .|...|.-+...|...|++++|.-.++++.
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            9999999998876 56777777777777778888888888888777643 488899999999999999999999999988


Q ss_pred             hCCCCC-CHHHHHHHHHHHHHcC---CHhHHHHHHHHHHhC
Q 015329          319 GRRLMP-NRKIYQTMIHYLCQEG---DFNLAYIMCKDSMKK  355 (409)
Q Consensus       319 ~~~~~p-~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~  355 (409)
                      -.  .| +...+..+...+...|   ++..+.++|.+.++.
T Consensus       182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            65  34 4444556666554443   456677888877765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.42  E-value=0.00026  Score=66.43  Aligned_cols=229  Identities=11%  Similarity=0.065  Sum_probs=147.1

Q ss_pred             hhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCC--------CCChhHHHHHHHHHH
Q 015329           55 KAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQ--------GRREGFIMRIMMLYG  126 (409)
Q Consensus        55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~  126 (409)
                      ...|+-+.|.+-.+.++       +...|..+.+.|.+..+++-|.-.+..|.....        ......-....-...
T Consensus       739 vtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi  811 (1416)
T KOG3617|consen  739 VTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI  811 (1416)
T ss_pred             EEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence            35678888877777664       345799999999999999988877776653210        001122222334456


Q ss_pred             hcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 015329          127 KAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAY  206 (409)
Q Consensus       127 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~  206 (409)
                      ..|.+++|+.+|++-+.         |..|=..|-..|.+++|.++- +-.++..+   ..||......+-..+|.+.|+
T Consensus       812 eLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiA-E~~DRiHL---r~Tyy~yA~~Lear~Di~~Al  878 (1416)
T KOG3617|consen  812 ELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIA-ETKDRIHL---RNTYYNYAKYLEARRDIEAAL  878 (1416)
T ss_pred             HHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHH-hhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence            78999999999988764         444556677889999999887 43333222   346666677777788899998


Q ss_pred             HHHHHHHh----------CCC---------CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 015329          207 LVMVEMQK----------LGV---------KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLV  267 (409)
Q Consensus       207 ~~~~~m~~----------~g~---------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~  267 (409)
                      +.|++...          ..+         ..|...|.....-+-..|+.+.|+.+|...+.         |-+++...|
T Consensus       879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C  949 (1416)
T KOG3617|consen  879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC  949 (1416)
T ss_pred             HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence            88875321          110         11223333333333345555555555554433         445566666


Q ss_pred             hcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329          268 NKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAML  318 (409)
Q Consensus       268 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  318 (409)
                      -.|+.++|-.+-++      .-|....-.|.+.|-+.|++.+|..+|.+..
T Consensus       950 ~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  950 IQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             eccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            67777777766554      2255666678888999999999998887754

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=0.00017  Score=58.22  Aligned_cols=190  Identities=14%  Similarity=0.130  Sum_probs=117.4

Q ss_pred             hcCChHHHHHHHHHhhcCCC---CCCccc-hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCh
Q 015329           56 AERDPEKLFQLFKANAHNRI---VIENKY-AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMI  131 (409)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~---~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  131 (409)
                      ..+++++.++++..+.....   ..++.. .|..++-+....|+.+.|...++.+...-++ +..+-.-=.-.+-..|++
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhch
Confidence            34688888888888764421   234443 3667777888888888888888887755422 333322122234457888


Q ss_pred             HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 015329          132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVE  211 (409)
Q Consensus       132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  211 (409)
                      ++|+++|+.+.+.+ +.|..++-.=+...-..|..-.|.+-+.+..+.  +..|...|.-+...|...|++++|.-.+++
T Consensus       103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE  179 (289)
T KOG3060|consen  103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEE  179 (289)
T ss_pred             hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            88888888888776 555566655555555555554444444444444  345777888888888888888888888888


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHH---cCChhhHHHHHHHHHhc
Q 015329          212 MQKLGVKPDVITYTTLISAFYK---DNRPEIGNGLWNLMVCK  250 (409)
Q Consensus       212 m~~~g~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~  250 (409)
                      +.-..+. +...|..+.+.+.-   ..+.+.+.+.|.+..+.
T Consensus       180 ~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  180 LLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            7765322 33334444443333   23445566666666654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.40  E-value=0.00032  Score=67.47  Aligned_cols=236  Identities=13%  Similarity=0.063  Sum_probs=161.7

Q ss_pred             ChhHHHHHHHHHHhcCChHHH-HHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHH
Q 015329          114 REGFIMRIMMLYGKAGMIKHA-MDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIV  192 (409)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~~~a-~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  192 (409)
                      .+....-+=.+.+.-|.-++| .+++.+..+            ++..........++..-......+  +..+...+..|
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L   92 (694)
T PRK15179         27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR--YPHTELFQVLV   92 (694)
T ss_pred             CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh--ccccHHHHHHH
Confidence            344444444556667776666 344444432            333333333332222222122222  34468889999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 015329          193 IKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRS  272 (409)
Q Consensus       193 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  272 (409)
                      .....+.|.+++|..+++...+.... +......+...+.+.+++++|+...++..... +-+......+..++.+.|++
T Consensus        93 a~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~  170 (694)
T PRK15179         93 ARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQS  170 (694)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcch
Confidence            99999999999999999999987433 56677788899999999999999999999874 45667778888899999999


Q ss_pred             hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329          273 WQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS  352 (409)
Q Consensus       273 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  352 (409)
                      ++|..+|+++...+. -+..++..+..++-..|+.++|...|+...+.. .+....|+..+.      ++..-..+++++
T Consensus       171 ~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~  242 (694)
T PRK15179        171 EQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAALRRL  242 (694)
T ss_pred             HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHHHHc
Confidence            999999999998543 257888899999999999999999999998762 334455655443      334445555555


Q ss_pred             HhC----CCCCCHHHHHHHHHHHHh
Q 015329          353 MKK----NWVPSVDTISALLEGLKK  373 (409)
Q Consensus       353 ~~~----~~~~~~~~~~~l~~~~~~  373 (409)
                      .-.    |....+......+.-|.+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~  267 (694)
T PRK15179        243 GVEGDGRDVPVSILVLEKMLQEIGR  267 (694)
T ss_pred             CcccccCCCceeeeeHHHHHHHHhh
Confidence            333    333344455555554544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.31  E-value=0.0015  Score=57.96  Aligned_cols=116  Identities=11%  Similarity=0.028  Sum_probs=61.3

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCCHhH
Q 015329          196 FCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN-LATFNVRIQHLVNKRRSWQ  274 (409)
Q Consensus       196 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~  274 (409)
                      +...|++++|+..++.+...-.. |...+....+.+.+.++.++|.+.++.+...  .|+ ....-.+-.+|.+.|++.+
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence            33455556666666665554221 3444444445555666666666666655554  233 3344444555556666666


Q ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015329          275 ANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYS  315 (409)
Q Consensus       275 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  315 (409)
                      |+.+++....... -|...|..|..+|...|+..++.....
T Consensus       393 ai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~A  432 (484)
T COG4783         393 AIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARA  432 (484)
T ss_pred             HHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHH
Confidence            6666655554432 255556666666666665555554433

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.31  E-value=0.00082  Score=62.54  Aligned_cols=190  Identities=13%  Similarity=0.117  Sum_probs=115.6

Q ss_pred             hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329           54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH  133 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  133 (409)
                      +...|+.+.|+.-|-+..          .....+.+..+...+.+|+.+++.++....  ...+|..+...|+..|+++.
T Consensus       716 l~~~~q~daainhfiea~----------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~  783 (1636)
T KOG3616|consen  716 LEQIGQLDAAINHFIEAN----------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEI  783 (1636)
T ss_pred             HHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHH
Confidence            445567777766665542          233456677777888888888887765432  45667777788888888888


Q ss_pred             HHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015329          134 AMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQ  213 (409)
Q Consensus       134 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  213 (409)
                      |.++|.+.-         .++-.|..|.+.|.++.|.++-.+.+   |...+...|-+-..-+-+.|++.+|.++|-...
T Consensus       784 ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~  851 (1636)
T KOG3616|consen  784 AEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG  851 (1636)
T ss_pred             HHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence            888886542         35567778888888888887765543   223345556666666667777777777664432


Q ss_pred             hCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 015329          214 KLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLM  279 (409)
Q Consensus       214 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  279 (409)
                          .|+     ..|.+|-+.|..++.+++...-....   -..|...+..-|-..|+...|..-|
T Consensus       852 ----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~f  905 (1636)
T KOG3616|consen  852 ----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHF  905 (1636)
T ss_pred             ----Cch-----HHHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHH
Confidence                233     24566666676666666655432211   1123333444444455555555444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.29  E-value=7.4e-05  Score=56.56  Aligned_cols=17  Identities=18%  Similarity=0.094  Sum_probs=6.5

Q ss_pred             HHHhcCCHHHHHHHHHH
Q 015329          300 GFCRSGHLDMAKKVYSA  316 (409)
Q Consensus       300 ~~~~~g~~~~a~~~~~~  316 (409)
                      .|...|++++|...|+.
T Consensus        94 ~~~~~g~~~~A~~~~~~  110 (135)
T TIGR02552        94 CLLALGEPESALKALDL  110 (135)
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            33333333333333333

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.27  E-value=0.00027  Score=65.60  Aligned_cols=107  Identities=18%  Similarity=0.139  Sum_probs=51.8

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhH
Q 015329          195 AFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQ  274 (409)
Q Consensus       195 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~  274 (409)
                      +......|.+|+.+++.+.....  -..-|..+.+.|...|+++.|+++|-+.         ..++-.|..|.+.|++++
T Consensus       741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d  809 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED  809 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence            34445556666666665554322  2334555556666666666666665432         123445556666666666


Q ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015329          275 ANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVY  314 (409)
Q Consensus       275 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  314 (409)
                      |.++-.+..  |.+.....|-.-..-.-+.|++.+|.++|
T Consensus       810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            665544332  22223333333333333444444444433

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.27  E-value=1.9e-06  Score=47.76  Aligned_cols=33  Identities=30%  Similarity=0.710  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD  220 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~  220 (409)
                      +||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            567777777777777777777777777776665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.26  E-value=8e-05  Score=66.13  Aligned_cols=116  Identities=13%  Similarity=0.115  Sum_probs=52.9

Q ss_pred             HHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 015329          228 ISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHL  307 (409)
Q Consensus       228 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  307 (409)
                      +..+...++++.|..+++++.+..  |+.  ...+...+...++-.+|.+++++..+... -+...+..-...+.+.+++
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCH
Confidence            333344455555555555555442  222  22344444444455555555555443321 1333444444444455555


Q ss_pred             HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHH
Q 015329          308 DMAKKVYSAMLGRRLMP-NRKIYQTMIHYLCQEGDFNLAYIMCK  350 (409)
Q Consensus       308 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~  350 (409)
                      +.|+++.+++.+.  .| +..+|..|..+|...|+++.|+..++
T Consensus       251 ~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  251 ELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            5555555555443  22 22345555555555555555554444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.26  E-value=1.8e-06  Score=47.47  Aligned_cols=32  Identities=34%  Similarity=0.578  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKP  219 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~  219 (409)
                      +|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555544

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.25  E-value=2.2e-05  Score=69.92  Aligned_cols=122  Identities=16%  Similarity=0.089  Sum_probs=88.4

Q ss_pred             CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHH
Q 015329          183 QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL--GVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFN  260 (409)
Q Consensus       183 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  260 (409)
                      +.+......+++.+....+++.+..++-+....  ....-..|.+++++.|.+.|..+.++.+++.=...|+-||..+++
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            345556667777777777777788877777754  222334455678888888888888888888888888888888888


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 015329          261 VRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS  304 (409)
Q Consensus       261 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  304 (409)
                      .+|..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            88888888888888888888777666666666666666666555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.25  E-value=2.1e-06  Score=47.54  Aligned_cols=31  Identities=35%  Similarity=0.417  Sum_probs=12.6

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 015329          259 FNVRIQHLVNKRRSWQANKLMGLMQRFGIEP  289 (409)
Q Consensus       259 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p  289 (409)
                      |+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p   33 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP   33 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            3344444444444444444444444444333

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.24  E-value=0.00015  Score=55.64  Aligned_cols=128  Identities=13%  Similarity=0.051  Sum_probs=80.2

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHH
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP--DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR--KIYQTM  332 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l  332 (409)
                      ..|..++..+ ..++...+...++.+.+....-  .....-.+...+...|++++|...|+........|+.  .....+
T Consensus        13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            3455555555 3677777777777776653221  1223333456677778888888888888776522222  233445


Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 015329          333 IHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALV  387 (409)
Q Consensus       333 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  387 (409)
                      ...+...|++++|+..++.....  ......+....+.|.+.|++++|+..|+..
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            67777788888888887653332  233445566668888888888888877754

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.22  E-value=2.5e-05  Score=69.62  Aligned_cols=125  Identities=12%  Similarity=0.137  Sum_probs=98.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHH
Q 015329          215 LGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKG--CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEV  292 (409)
Q Consensus       215 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~  292 (409)
                      .+...+......+++.+....+.+.+..++.......  ...-..|.+++++.|.+.|..+.++.+++.=...|+-||.+
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            3445577788888888888888888888888877652  22334556788888888888888888888888888888999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 015329          293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE  339 (409)
Q Consensus       293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  339 (409)
                      ++|.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999999998888888888776666777777777766655

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.22  E-value=0.003  Score=54.93  Aligned_cols=124  Identities=19%  Similarity=0.160  Sum_probs=91.8

Q ss_pred             HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329          256 LATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHY  335 (409)
Q Consensus       256 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  335 (409)
                      ..+.+..|.-+...|+...|.++-++..    -|+..-|..-+.+++..++|++-.++-..  +    -.+.-|..++.+
T Consensus       177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~  246 (319)
T PF04840_consen  177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEA  246 (319)
T ss_pred             cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHH
Confidence            3456667778888999988888877765    57899999999999999999988876542  1    134668999999


Q ss_pred             HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHH---------HHHHHhcCCCCCchhH
Q 015329          336 LCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTI---------MALVQRRVPHFSSNQL  399 (409)
Q Consensus       336 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~---------~~~~~~~~~~~~~~~~  399 (409)
                      |.+.|+..+|..++..     + +    +..-+..|++.|++.+|.+.         +..+.+..+++.....
T Consensus       247 ~~~~~~~~eA~~yI~k-----~-~----~~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~~~~~~~~  309 (319)
T PF04840_consen  247 CLKYGNKKEASKYIPK-----I-P----DEERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCPGNNDQLI  309 (319)
T ss_pred             HHHCCCHHHHHHHHHh-----C-C----hHHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCCCCChHHH
Confidence            9999999999988776     1 1    24456778899998888665         3445555555544433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.18  E-value=0.00026  Score=66.51  Aligned_cols=240  Identities=11%  Similarity=0.066  Sum_probs=161.2

Q ss_pred             CccchHHHHH--HHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-C--------C
Q 015329           78 ENKYAFEDTV--SRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLY-G--------C  146 (409)
Q Consensus        78 ~~~~~~~~li--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~--------~  146 (409)
                      .|..|-..++  +.|..-|+.+.|.+-.+-++      +..+|..+.+.|.+.++.+-|.-.+..|... |        .
T Consensus       724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q  797 (1416)
T KOG3617|consen  724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ  797 (1416)
T ss_pred             cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence            4555666665  45778899999988777765      6789999999999999999998888777431 1        1


Q ss_pred             CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 015329          147 KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTT  226 (409)
Q Consensus       147 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~  226 (409)
                      .++ .+=....-...+.|-.++|..+|++- +         -|..|=+.|-..|.|++|.++-+.--+..++   .||..
T Consensus       798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~c-k---------R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~  863 (1416)
T KOG3617|consen  798 NGE-EDEAKVAVLAIELGMLEEALILYRQC-K---------RYDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYN  863 (1416)
T ss_pred             CCc-chhhHHHHHHHHHhhHHHHHHHHHHH-H---------HHHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHH
Confidence            121 22222333345678889999998543 2         2445566788899999999987654443333   34444


Q ss_pred             HHHHHHHcCChhhHHHHHHHH----------HhcC---------CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 015329          227 LISAFYKDNRPEIGNGLWNLM----------VCKG---------CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGI  287 (409)
Q Consensus       227 ll~~~~~~~~~~~a~~~~~~m----------~~~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  287 (409)
                      ...-+-..++.+.|++.|++-          ....         -..|...|.-..+..-..|+.+.|+.+|+...+   
T Consensus       864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---  940 (1416)
T KOG3617|consen  864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---  940 (1416)
T ss_pred             HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence            444445567777777766542          1111         123455555566666678888888888877652   


Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329          288 EPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS  352 (409)
Q Consensus       288 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  352 (409)
                            |-.+++..|-.|+.++|-++-++--      |....-.+.+.|-..|++.+|..+|.+.
T Consensus       941 ------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  941 ------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             ------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                  4567777788899999988876532      5555666778888888888888877654

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.18  E-value=3.7e-05  Score=53.77  Aligned_cols=38  Identities=13%  Similarity=0.215  Sum_probs=16.7

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q 015329          195 AFCEMGILDKAYLVMVEMQKLGV-KPDVITYTTLISAFY  232 (409)
Q Consensus       195 ~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~  232 (409)
                      .+...+++.....+|+.+.+.|+ .|+..+|+.++.+.+
T Consensus        34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~   72 (120)
T PF08579_consen   34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA   72 (120)
T ss_pred             HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence            33333444444444444444444 444444444444433

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.17  E-value=3.9e-05  Score=53.64  Aligned_cols=79  Identities=15%  Similarity=0.323  Sum_probs=60.1

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHhcCC-CCCHhhHHHHHHHHHhcC--------CHhHHHHHHHHHHHcCCCcCHHHHH
Q 015329          225 TTLISAFYKDNRPEIGNGLWNLMVCKGC-FPNLATFNVRIQHLVNKR--------RSWQANKLMGLMQRFGIEPDEVTYN  295 (409)
Q Consensus       225 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~  295 (409)
                      ...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        ++-..+.+|+.|...+++|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            3455556666888888888888888888 788888888888777642        3456778888888888888888888


Q ss_pred             HHHHHHHh
Q 015329          296 LVIKGFCR  303 (409)
Q Consensus       296 ~li~~~~~  303 (409)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            88877654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.15  E-value=0.00039  Score=66.67  Aligned_cols=183  Identities=9%  Similarity=0.005  Sum_probs=104.7

Q ss_pred             ChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 015329           59 DPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTF  138 (409)
Q Consensus        59 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  138 (409)
                      +...|+..|-+..+.+  .-=...|..|...|....+..+|.+.|+........ +......+...|++..+++.|..+.
T Consensus       473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~  549 (1238)
T KOG1127|consen  473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEIC  549 (1238)
T ss_pred             hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHH
Confidence            4555555555555444  111234666666666666666777777776655332 4445556667777777777777763


Q ss_pred             HHhhhcC-CCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 015329          139 YDMHLYG-CKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGV  217 (409)
Q Consensus       139 ~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~  217 (409)
                      -..-+.. ...-...|....-.|.+.++...+...|+...+-  -+.|...|..++.+|.+.|++..|.++|.+....  
T Consensus       550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--  625 (1238)
T KOG1127|consen  550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--  625 (1238)
T ss_pred             HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence            3322211 0011122333333455666666666666443322  1335667888888888888888888888877764  


Q ss_pred             CCCHHHHHHHH--HHHHHcCChhhHHHHHHHHHh
Q 015329          218 KPDVITYTTLI--SAFYKDNRPEIGNGLWNLMVC  249 (409)
Q Consensus       218 ~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~m~~  249 (409)
                      .|+ .+|....  -.-+..|.+.+++..+.....
T Consensus       626 rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  626 RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            222 2333222  223557888888888877764

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.14  E-value=0.00029  Score=62.64  Aligned_cols=127  Identities=13%  Similarity=0.134  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 015329          187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHL  266 (409)
Q Consensus       187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  266 (409)
                      .....+++.+...++++.|.++|+++.+..  |+  ....++..+...++-.+|.+++++..... +.+......-...+
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            335556677777889999999999999864  44  34457788888888899999999988653 45666777777788


Q ss_pred             HhcCCHhHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          267 VNKRRSWQANKLMGLMQRFGIEPD-EVTYNLVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       267 ~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      .+.++.+.|+.+.+++.+.  .|+ -.+|..|..+|.+.|+++.|+..++.+.-.
T Consensus       245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            8999999999999999887  454 558999999999999999999999877654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.12  E-value=0.00035  Score=53.51  Aligned_cols=115  Identities=8%  Similarity=-0.011  Sum_probs=54.0

Q ss_pred             cCChhhHHHHHHHHHhcCCCCC---HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHhcCCHH
Q 015329          234 DNRPEIGNGLWNLMVCKGCFPN---LATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE--VTYNLVIKGFCRSGHLD  308 (409)
Q Consensus       234 ~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~  308 (409)
                      .++...+...++.+.+.. +.+   ....-.+...+...|++++|...|+.+......++.  .....|...+...|+++
T Consensus        24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            455555555555555432 111   111222334455556666666666655554422211  12233445555556666


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329          309 MAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKD  351 (409)
Q Consensus       309 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  351 (409)
                      +|+..++......  .....+....+.|.+.|++++|...|+.
T Consensus       103 ~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  103 EALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            6666654432221  2233444455555666666666665554

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.11  E-value=0.0066  Score=54.75  Aligned_cols=111  Identities=17%  Similarity=0.208  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329          292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEG  370 (409)
Q Consensus       292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~  370 (409)
                      .+|...+..-.+..-++.|..+|.+..+.+..+ ++.++++++.-|| .++..-|.++|+--+++ +.-++.-....+.-
T Consensus       367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf  444 (656)
T KOG1914|consen  367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDF  444 (656)
T ss_pred             eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence            356667777778888999999999999987777 7777888888766 67888999999876654 23455556677788


Q ss_pred             HHhCCChHHHHHHHHHHHhcCCC--CCchhHHHHHH
Q 015329          371 LKKNNQPCKANTIMALVQRRVPH--FSSNQLSAFKS  404 (409)
Q Consensus       371 ~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~  404 (409)
                      +...|+-..+..+|+++.....+  -+..++..+++
T Consensus       445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~  480 (656)
T KOG1914|consen  445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE  480 (656)
T ss_pred             HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence            88889999999999998877333  34455555554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.06  E-value=0.00013  Score=50.92  Aligned_cols=94  Identities=13%  Similarity=0.029  Sum_probs=49.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 015329          296 LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN  375 (409)
Q Consensus       296 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g  375 (409)
                      .+...+...|++++|...++...+.... +...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence            3444455555666666666555544211 22444555555555566666666665555443 233345555555666666


Q ss_pred             ChHHHHHHHHHHHhcC
Q 015329          376 QPCKANTIMALVQRRV  391 (409)
Q Consensus       376 ~~~~a~~~~~~~~~~~  391 (409)
                      +.+.|...+....+..
T Consensus        83 ~~~~a~~~~~~~~~~~   98 (100)
T cd00189          83 KYEEALEAYEKALELD   98 (100)
T ss_pred             hHHHHHHHHHHHHccC
Confidence            6666666665555443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.05  E-value=0.00018  Score=53.00  Aligned_cols=102  Identities=17%  Similarity=0.080  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--CCCCHHHHHHHH
Q 015329          293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM--PNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN--WVPSVDTISALL  368 (409)
Q Consensus       293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~l~  368 (409)
                      ++..+...+.+.|++++|.+.|..+......  .....+..+..++.+.|++++|...|+.+....  .......+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3444555666667777777777776654211  113345556666777777777777777666532  111244566666


Q ss_pred             HHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          369 EGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       369 ~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      .++.+.|+.++|.+.++++.+..|+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            67777777777777777777766554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.02  E-value=0.0032  Score=52.72  Aligned_cols=182  Identities=11%  Similarity=0.118  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITY---TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ  264 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  264 (409)
                      .+-.....+...|++++|.+.|+.+...-... ....   -.+..++.+.+++++|...+++..+..-.....-|...+.
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~  112 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR  112 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence            33334555677889999999999888754332 2222   3455777888899999999988887532222233333333


Q ss_pred             HHHh--cC---------------CH---hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015329          265 HLVN--KR---------------RS---WQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP  324 (409)
Q Consensus       265 ~~~~--~~---------------~~---~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  324 (409)
                      +.+.  .+               |.   .+|+..               +..++.-|-...-..+|...+..+...    
T Consensus       113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~---------------~~~li~~yP~S~ya~~A~~rl~~l~~~----  173 (243)
T PRK10866        113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRD---------------FSKLVRGYPNSQYTTDATKRLVFLKDR----  173 (243)
T ss_pred             HHhhhhcchhhhhhccCCCccccCHHHHHHHHHH---------------HHHHHHHCcCChhHHHHHHHHHHHHHH----
Confidence            3331  11               11   122233               334444444444455665555554432    


Q ss_pred             CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329          325 NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK--NWVPSVDTISALLEGLKKNNQPCKANTIMALVQR  389 (409)
Q Consensus       325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  389 (409)
                      -...--.+..-|.+.|.+..|..-++.+++.  +.+........+..+|.+.|..++|.++...+..
T Consensus       174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~  240 (243)
T PRK10866        174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA  240 (243)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence            1111225566788899999999999998875  3445566778888999999999999988776643

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.02  E-value=0.0011  Score=57.12  Aligned_cols=199  Identities=12%  Similarity=0.080  Sum_probs=105.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCC--CC-C--CHHHHHHHHHHHHHcCChhhHHHHHHHHHh----cCCCCC--Hh
Q 015329          189 FNIVIKAFCEMGILDKAYLVMVEMQKLG--VK-P--DVITYTTLISAFYKDNRPEIGNGLWNLMVC----KGCFPN--LA  257 (409)
Q Consensus       189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~-~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~--~~  257 (409)
                      |.-....|...|++++|.+.|.+..+..  .. +  -...|......|. ..++++|...+++..+    .| .++  ..
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G-~~~~aA~  115 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAG-RFSQAAK  115 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT--HHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcC-cHHHHHH
Confidence            4445556666677777766666554211  01 0  1122333333333 3366666666665442    22 121  23


Q ss_pred             hHHHHHHHHHhc-CCHhHHHHHHHHHHH----cCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCC
Q 015329          258 TFNVRIQHLVNK-RRSWQANKLMGLMQR----FGIEP--DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRL-----MPN  325 (409)
Q Consensus       258 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~----~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p~  325 (409)
                      .+..+...|... |++++|.+.|++..+    .| .+  -...+..+...+.+.|++++|.++|++......     ..+
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~  194 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS  194 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence            445555566666 788888888877643    22 11  133456667777888888888888887766522     122


Q ss_pred             HH-HHHHHHHHHHHcCCHhHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329          326 RK-IYQTMIHYLCQEGDFNLAYIMCKDSMKK--NWVPS--VDTISALLEGLKKNNQPCKANTIMALVQRRV  391 (409)
Q Consensus       326 ~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  391 (409)
                      .. .|...+-++...|++..|.+.+++....  ++..+  ......|+.+| +.|+.+...+.+.+..+..
T Consensus       195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccC
Confidence            22 2233344556678888888888877654  33333  34556666666 5566666666665554443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.97  E-value=0.00038  Score=59.71  Aligned_cols=133  Identities=10%  Similarity=0.079  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329          258 TFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG-FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYL  336 (409)
Q Consensus       258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  336 (409)
                      +|-.++....+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|..+|+...+. +..+...|...++.+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            344455555555555555555555543321 122222222222 11133444455555555443 222444455555555


Q ss_pred             HHcCCHhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          337 CQEGDFNLAYIMCKDSMKKNWVPSV---DTISALLEGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       337 ~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      ...|+.+.|..+|++.+.. +.++.   ..|..++..-.+.|+.+.+.++.+++.+..+.
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            5555555555555554443 11111   25555555555555555555555555554433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.95  E-value=1.3e-05  Score=42.91  Aligned_cols=29  Identities=34%  Similarity=0.740  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQKLG  216 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g  216 (409)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            56667777777777777777777776655

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.92  E-value=1.5e-05  Score=42.58  Aligned_cols=19  Identities=11%  Similarity=-0.011  Sum_probs=6.7

Q ss_pred             HHHHHHhcCCHhHHHHHHH
Q 015329          262 RIQHLVNKRRSWQANKLMG  280 (409)
Q Consensus       262 ll~~~~~~~~~~~a~~~~~  280 (409)
                      +|++|++.|++++|.++|+
T Consensus         6 li~~~~~~~~~~~a~~~~~   24 (31)
T PF01535_consen    6 LISGYCKMGQFEEALEVFD   24 (31)
T ss_pred             HHHHHHccchHHHHHHHHH
Confidence            3333333333333333333

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.91  E-value=2.6e-05  Score=53.40  Aligned_cols=81  Identities=20%  Similarity=0.205  Sum_probs=41.5

Q ss_pred             cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 015329          304 SGHLDMAKKVYSAMLGRRLM-PNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANT  382 (409)
Q Consensus       304 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  382 (409)
                      .|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+ ..+......+..+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            35566666666666655221 1333344456666666666666666655 2211 1122333444566666666666666


Q ss_pred             HHHH
Q 015329          383 IMAL  386 (409)
Q Consensus       383 ~~~~  386 (409)
                      ++++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.90  E-value=0.00086  Score=49.24  Aligned_cols=98  Identities=10%  Similarity=0.007  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 015329          258 TFNVRIQHLVNKRRSWQANKLMGLMQRFGIE--PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM--PNRKIYQTMI  333 (409)
Q Consensus       258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li  333 (409)
                      ++......+.+.|++++|.+.|..+.+....  .....+..+..++.+.|++++|...|+.+......  .....+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3445555666677777777777776654211  11234555666677777777777777776654211  1234556666


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhC
Q 015329          334 HYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       334 ~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      .++.+.|+.++|...++++.+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            6667777777777777776665

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.89  E-value=0.00041  Score=48.27  Aligned_cols=92  Identities=13%  Similarity=0.017  Sum_probs=45.8

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 015329          190 NIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNK  269 (409)
Q Consensus       190 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~  269 (409)
                      ..+...+...|++++|..++++..+.... +...+..+...+...+++++|...++...... +.+..++..+...+...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence            33444555555666666666555543221 23444445555555555555555555554432 22333444455555555


Q ss_pred             CCHhHHHHHHHHHH
Q 015329          270 RRSWQANKLMGLMQ  283 (409)
Q Consensus       270 ~~~~~a~~~~~~~~  283 (409)
                      |+.+.|...+....
T Consensus        82 ~~~~~a~~~~~~~~   95 (100)
T cd00189          82 GKYEEALEAYEKAL   95 (100)
T ss_pred             HhHHHHHHHHHHHH
Confidence            55555555555443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.87  E-value=0.00045  Score=54.82  Aligned_cols=86  Identities=20%  Similarity=0.239  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHHHH-----cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc----------------CCHhHHHHH
Q 015329          220 DVITYTTLISAFYK-----DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNK----------------RRSWQANKL  278 (409)
Q Consensus       220 ~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a~~~  278 (409)
                      |..+|..+++.|.+     .|.++-....+..|.+-|+.-|..+|+.||+.+=+.                .+-+-|+++
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l  125 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL  125 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence            55555555555543     355555666666666666666666666666655431                123345555


Q ss_pred             HHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 015329          279 MGLMQRFGIEPDEVTYNLVIKGFCRSG  305 (409)
Q Consensus       279 ~~~~~~~~~~p~~~~~~~li~~~~~~g  305 (409)
                      +++|...|+-||..|+..+++.+.+.+
T Consensus       126 L~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  126 LEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence            555555555555555555555554443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.83  E-value=0.00024  Score=56.29  Aligned_cols=88  Identities=23%  Similarity=0.357  Sum_probs=66.2

Q ss_pred             CHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----------------cCChhhHHHH
Q 015329          185 DIFSFNIVIKAFCEM-----GILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK----------------DNRPEIGNGL  243 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----------------~~~~~~a~~~  243 (409)
                      |..+|..++..|.+.     |..+-....+..|.+-|+.-|..+|+.|++.+=+                -.+-+-|+++
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l  125 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL  125 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence            566666666666543     5566666677777777777777777777776643                1233678999


Q ss_pred             HHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 015329          244 WNLMVCKGCFPNLATFNVRIQHLVNKRRS  272 (409)
Q Consensus       244 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  272 (409)
                      +++|...|+.||..++..+++.+.+.+..
T Consensus       126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p  154 (228)
T PF06239_consen  126 LEQMENNGVMPDKETEQMLLNIFGRKSHP  154 (228)
T ss_pred             HHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence            99999999999999999999999877654

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.78  E-value=0.0017  Score=51.41  Aligned_cols=88  Identities=9%  Similarity=-0.003  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD--EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH  334 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  334 (409)
                      ..+..+...+...|++++|...|++..+.+..+.  ...+..+...+.+.|++++|...+.+....... +...+..+..
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~  114 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence            4455566666667777777777777665433222  345666666667777777777777766654221 3444555555


Q ss_pred             HHHHcCCHhHH
Q 015329          335 YLCQEGDFNLA  345 (409)
Q Consensus       335 ~~~~~g~~~~a  345 (409)
                      .+...|+...+
T Consensus       115 ~~~~~g~~~~a  125 (172)
T PRK02603        115 IYHKRGEKAEE  125 (172)
T ss_pred             HHHHcCChHhH
Confidence            56555554433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.78  E-value=0.0032  Score=49.80  Aligned_cols=88  Identities=9%  Similarity=-0.024  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD--VITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRI  263 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  263 (409)
                      ...+..+...+...|++++|...|++..+.+..+.  ...+..+...+.+.|++++|...+.+..+.. +.+...+..+.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg  113 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence            44566666667777777777777777765432221  3455666666666677777766666666542 22344444445


Q ss_pred             HHHHhcCCHhH
Q 015329          264 QHLVNKRRSWQ  274 (409)
Q Consensus       264 ~~~~~~~~~~~  274 (409)
                      ..+...|+...
T Consensus       114 ~~~~~~g~~~~  124 (172)
T PRK02603        114 VIYHKRGEKAE  124 (172)
T ss_pred             HHHHHcCChHh
Confidence            55555555443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.78  E-value=0.00084  Score=59.83  Aligned_cols=102  Identities=10%  Similarity=-0.012  Sum_probs=80.4

Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329          263 IQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF  342 (409)
Q Consensus       263 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  342 (409)
                      ...+...|++++|+..|+++.+.... +...|..+..+|.+.|++++|+..++..+..... +...|..+..+|...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence            45566789999999999999887543 6778888888999999999999999999877432 667788888899999999


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329          343 NLAYIMCKDSMKKNWVPSVDTISALL  368 (409)
Q Consensus       343 ~~a~~~~~~m~~~~~~~~~~~~~~l~  368 (409)
                      ++|...|++.++.+  |+......++
T Consensus        87 ~eA~~~~~~al~l~--P~~~~~~~~l  110 (356)
T PLN03088         87 QTAKAALEKGASLA--PGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHHHHhC--CCCHHHHHHH
Confidence            99999999888763  4444443333

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.78  E-value=0.0006  Score=58.53  Aligned_cols=132  Identities=10%  Similarity=0.020  Sum_probs=79.7

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHH-HHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHH
Q 015329           82 AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMML-YGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVL  160 (409)
Q Consensus        82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  160 (409)
                      +|..++...-+.+..+.|.++|....+.+ ..+..+|...... |...++.+.|.++|+...+. ...+...|...++.+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            46666777777777777777777776432 2345555544444 33355666677777776554 345556677777777


Q ss_pred             HccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 015329          161 TESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEMGILDKAYLVMVEMQKL  215 (409)
Q Consensus       161 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  215 (409)
                      ...++.+.+..+|++......... ....|...++.=.+.|+++.+.++.+++.+.
T Consensus        81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            777777777777766654422222 2346777777777777777777777766653

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.75  E-value=0.0017  Score=49.22  Aligned_cols=92  Identities=10%  Similarity=-0.030  Sum_probs=50.5

Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 015329          261 VRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG  340 (409)
Q Consensus       261 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  340 (409)
                      .+-.-+...|++++|.++|+-+...... +..-|-.|..++...|++++|+..|......++. |+..+-.+..++...|
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG  117 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence            3334444556666666666665554322 3444455555555566666666666665555432 4555555556666666


Q ss_pred             CHhHHHHHHHHHHh
Q 015329          341 DFNLAYIMCKDSMK  354 (409)
Q Consensus       341 ~~~~a~~~~~~m~~  354 (409)
                      +.+.|.+.|+..+.
T Consensus       118 ~~~~A~~aF~~Ai~  131 (157)
T PRK15363        118 NVCYAIKALKAVVR  131 (157)
T ss_pred             CHHHHHHHHHHHHH
Confidence            66666666555443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.74  E-value=0.00011  Score=50.35  Aligned_cols=81  Identities=14%  Similarity=0.121  Sum_probs=43.7

Q ss_pred             cCCHhHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 015329          269 KRRSWQANKLMGLMQRFGIE-PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYI  347 (409)
Q Consensus       269 ~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  347 (409)
                      .|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence            45666666666666655331 2333344466666677777777776666 222111 22333344666666777777776


Q ss_pred             HHHH
Q 015329          348 MCKD  351 (409)
Q Consensus       348 ~~~~  351 (409)
                      ++++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.74  E-value=0.0078  Score=58.23  Aligned_cols=164  Identities=13%  Similarity=0.051  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCCCHhhHHHHHH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKG-CFPNLATFNVRIQ  264 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~  264 (409)
                      ...|..|...|+...+...|.+.|++..+.... +...+..+.+.|+...+++.|..+.-...+.. ...-...|...--
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~  570 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP  570 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence            446788888888877888888888888776533 66777788888888888888888732222211 0001122223444


Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCH
Q 015329          265 HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHY--LCQEGDF  342 (409)
Q Consensus       265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~  342 (409)
                      .|.+.++..+++.-|+......++ |...|..+..+|...|.+..|.++|.+....  .|+. +|...-.+  -+..|.+
T Consensus       571 yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkY  646 (1238)
T KOG1127|consen  571 YYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKY  646 (1238)
T ss_pred             cccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhH
Confidence            566777788888888877766543 7778888888888888888888888777654  3332 23332222  3456777


Q ss_pred             hHHHHHHHHHHh
Q 015329          343 NLAYIMCKDSMK  354 (409)
Q Consensus       343 ~~a~~~~~~m~~  354 (409)
                      .+|...+...+.
T Consensus       647 keald~l~~ii~  658 (1238)
T KOG1127|consen  647 KEALDALGLIIY  658 (1238)
T ss_pred             HHHHHHHHHHHH
Confidence            777777665543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.70  E-value=0.029  Score=48.88  Aligned_cols=126  Identities=13%  Similarity=0.160  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 015329          223 TYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFC  302 (409)
Q Consensus       223 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  302 (409)
                      +.+..|.-+...|+...|.++-.+.    -.|+...|...+.+++..++|++...+...      +-++.-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence            4455566677888888888776665    258999999999999999999987776433      124477888999999


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 015329          303 RSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKN  374 (409)
Q Consensus       303 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~  374 (409)
                      +.|+..+|..+...+     .     +..-+..|.+.|++.+|.+...+      .-|...+..+...+...
T Consensus       249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~------~kd~~~L~~i~~~~~~~  304 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK------EKDIDLLKQILKRCPGN  304 (319)
T ss_pred             HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH------cCCHHHHHHHHHHCCCC
Confidence            999999999988762     1     35567888999999999876543      23555665555544333

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.67  E-value=0.00024  Score=45.74  Aligned_cols=61  Identities=16%  Similarity=0.115  Sum_probs=42.1

Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          333 IHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       333 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      ...+...|++++|.+.|++.++.. +-+...+..+..++...|++++|...++++.+..|++
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            455667777777777777777664 4456667777777777777777777777777776653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.67  E-value=0.0018  Score=50.98  Aligned_cols=64  Identities=16%  Similarity=0.014  Sum_probs=31.3

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP--DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      ..|..+...+...|++++|...|+........+  ...++..+...|...|+.++|...++.....
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            334444444455555555555555554432221  1234455555555555555555555555443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.66  E-value=0.0028  Score=48.06  Aligned_cols=94  Identities=9%  Similarity=-0.004  Sum_probs=80.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 015329          296 LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN  375 (409)
Q Consensus       296 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g  375 (409)
                      .+..-+...|++++|..+|+.+...... +..-|-.|.-++-..|++.+|+..|......+ +-|+..+..+..++...|
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence            4445567899999999999998877544 56667788888889999999999999998877 578899999999999999


Q ss_pred             ChHHHHHHHHHHHhcC
Q 015329          376 QPCKANTIMALVQRRV  391 (409)
Q Consensus       376 ~~~~a~~~~~~~~~~~  391 (409)
                      +.+.|++.|+......
T Consensus       118 ~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        118 NVCYAIKALKAVVRIC  133 (157)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999887655

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.63  E-value=0.0026  Score=56.69  Aligned_cols=87  Identities=9%  Similarity=-0.064  Sum_probs=38.5

Q ss_pred             HHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhh
Q 015329          160 LTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEI  239 (409)
Q Consensus       160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~  239 (409)
                      +...|+++.|...|++.....  +-+...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~e   88 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQT   88 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHH
Confidence            334444444444444433221  112334444444444555555555555544443221 33344444444444555555


Q ss_pred             HHHHHHHHHh
Q 015329          240 GNGLWNLMVC  249 (409)
Q Consensus       240 a~~~~~~m~~  249 (409)
                      |...|+...+
T Consensus        89 A~~~~~~al~   98 (356)
T PLN03088         89 AKAALEKGAS   98 (356)
T ss_pred             HHHHHHHHHH
Confidence            5555544444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.61  E-value=0.00035  Score=45.62  Aligned_cols=67  Identities=13%  Similarity=0.092  Sum_probs=48.2

Q ss_pred             CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhcCC
Q 015329          325 NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN-QPCKANTIMALVQRRVP  392 (409)
Q Consensus       325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~  392 (409)
                      +..+|..+...+...|++++|+..|++.++.+ +.+...|..+..++.+.| ++++|++.+++..+.+|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            45567777777777788888888777777764 445667777777777777 67788877777776654

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.60  E-value=0.011  Score=55.35  Aligned_cols=140  Identities=13%  Similarity=-0.003  Sum_probs=88.8

Q ss_pred             CCCCHhhHHHHHHHHHhcC-----CHhHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 015329          252 CFPNLATFNVRIQHLVNKR-----RSWQANKLMGLMQRFGIEPD-EVTYNLVIKGFCRS--------GHLDMAKKVYSAM  317 (409)
Q Consensus       252 ~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~a~~~~~~m  317 (409)
                      .+.+...|...+.+.....     +...|..+|++..+.  .|+ ...|..+..++...        .+...+.+.....
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            3556677777777654422     255777888887776  343 33444433333221        1123334444433


Q ss_pred             HhC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          318 LGR-RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       318 ~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      ... ....+...|..+.-.....|++++|...+++.++.+  |+...|..+...+...|+.++|.+.+++..+.+|..+
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            332 123345667766666666788888888888888764  6777888888888888888888888888888877755

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.60  E-value=0.0039  Score=49.11  Aligned_cols=122  Identities=11%  Similarity=0.008  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHH-HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHhHHHHHH
Q 015329          273 WQANKLMGLMQ-RFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP--NRKIYQTMIHYLCQEGDFNLAYIMC  349 (409)
Q Consensus       273 ~~a~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~  349 (409)
                      ..+...+..+. ..+..-....|..+...+...|++++|...|+........+  ...++..+...+...|++++|...+
T Consensus        16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~   95 (168)
T CHL00033         16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY   95 (168)
T ss_pred             ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            33444444442 22222235566777888888999999999999998663332  2357888999999999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHH-------hCCChH-------HHHHHHHHHHhcCCCCC
Q 015329          350 KDSMKKNWVPSVDTISALLEGLK-------KNNQPC-------KANTIMALVQRRVPHFS  395 (409)
Q Consensus       350 ~~m~~~~~~~~~~~~~~l~~~~~-------~~g~~~-------~a~~~~~~~~~~~~~~~  395 (409)
                      +...... +....++..+...+.       ..|+++       +|..++++.....|+..
T Consensus        96 ~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         96 FQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            9988753 344556666666666       778877       55555555666665543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.57  E-value=0.034  Score=46.64  Aligned_cols=57  Identities=16%  Similarity=-0.017  Sum_probs=43.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329          296 LVIKGFCRSGHLDMAKKVYSAMLGR--RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS  352 (409)
Q Consensus       296 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  352 (409)
                      .+...|.+.|.+..|..-++.+.+.  +..........++.+|...|..++|..+...+
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            4566688888888888888888876  44445566777888888888888888776654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.011  Score=49.70  Aligned_cols=106  Identities=13%  Similarity=0.116  Sum_probs=73.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 015329          290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE---GDFNLAYIMCKDSMKKNWVPSVDTISA  366 (409)
Q Consensus       290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~  366 (409)
                      |...|-.|..+|.+.|+.+.|..-|.+..+... +|...+..+..++..+   ....++..+|++++..+ +-|+.+...
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l  232 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL  232 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence            677787888888888888888888887776622 2555566665555433   22456777888777765 556666677


Q ss_pred             HHHHHHhCCChHHHHHHHHHHHhcCCCCCch
Q 015329          367 LLEGLKKNNQPCKANTIMALVQRRVPHFSSN  397 (409)
Q Consensus       367 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  397 (409)
                      |...+...|++.+|...|+.|.+..|+.++.
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r  263 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPR  263 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence            7777888888888888888888777766543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.51  E-value=0.0025  Score=53.86  Aligned_cols=102  Identities=14%  Similarity=0.126  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--CCCCHHHHH
Q 015329          292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN----RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN--WVPSVDTIS  365 (409)
Q Consensus       292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~  365 (409)
                      ..|...+..+.+.|++++|...|+.+.+.  .|+    ...+-.+..+|...|++++|...|+.+.+.-  -+.....+.
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            34555554445567777777777777765  232    2455667777777888888888887776541  122344555


Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          366 ALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       366 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      .+...+...|+.+.|.++++.+.+..|...
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            566677778888888888888887776654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.021  Score=49.87  Aligned_cols=53  Identities=11%  Similarity=0.172  Sum_probs=24.1

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCChhhHHHHHHHHHhc
Q 015329          195 AFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISA--FYKDNRPEIGNGLWNLMVCK  250 (409)
Q Consensus       195 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~  250 (409)
                      ++.-.|+.++|.+.--...+..   ....+...+++  +...++.+.+...|++-+..
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l  232 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL  232 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc
Confidence            3444556666655555444432   11222223322  22345555566555555543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.49  E-value=0.0013  Score=54.73  Aligned_cols=101  Identities=15%  Similarity=0.121  Sum_probs=78.5

Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHh
Q 015329          264 QHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFN  343 (409)
Q Consensus       264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  343 (409)
                      .-..+.+++.+|+..|.+..+.... |.+.|..=..+|.+.|.++.|++-.+..+..+.. -..+|..|-.+|...|++.
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence            3456788999999999999887533 6777777888999999999999888877765322 3467888999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329          344 LAYIMCKDSMKKNWVPSVDTISALL  368 (409)
Q Consensus       344 ~a~~~~~~m~~~~~~~~~~~~~~l~  368 (409)
                      +|.+.|++.++.  .|+-.+|..=+
T Consensus       167 ~A~~aykKaLel--dP~Ne~~K~nL  189 (304)
T KOG0553|consen  167 EAIEAYKKALEL--DPDNESYKSNL  189 (304)
T ss_pred             HHHHHHHhhhcc--CCCcHHHHHHH
Confidence            999999887765  57666665444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.47  E-value=0.025  Score=43.81  Aligned_cols=152  Identities=12%  Similarity=0.008  Sum_probs=93.8

Q ss_pred             HHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcC
Q 015329           50 ALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAG  129 (409)
Q Consensus        50 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  129 (409)
                      +..++...-||+..+.-...-...   .|+..--..+..++.+.|+..+|...|++...-....+..+...+.++....+
T Consensus        62 ~~~a~~q~ldP~R~~Rea~~~~~~---ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~  138 (251)
T COG4700          62 LLMALQQKLDPERHLREATEELAI---APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ  138 (251)
T ss_pred             HHHHHHHhcChhHHHHHHHHHHhh---chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence            334444445666554444333332   36666666788888888888888888888877666667777777888888888


Q ss_pred             ChHHHHHHHHHhhhcCC-CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 015329          130 MIKHAMDTFYDMHLYGC-KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYL  207 (409)
Q Consensus       130 ~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~  207 (409)
                      ++..|...++++.+... ..++.+.-.+.+.+...|....++.-|+....   .-|+...-......+.+.|+.+++..
T Consensus       139 ~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         139 EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence            88888888888766531 11233444556667777777766666644322   23444333333344555665555443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.47  E-value=0.023  Score=46.54  Aligned_cols=141  Identities=7%  Similarity=-0.024  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHH-----
Q 015329          224 YTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVI-----  298 (409)
Q Consensus       224 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li-----  298 (409)
                      -+.++..+...|.+.-....+++.++...+.++.....+...-.+.||.+.|...|++..+..-..|..+.+.++     
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            345555566667777777777777776656677777777777778888888888888776543333443333333     


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 015329          299 KGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISAL  367 (409)
Q Consensus       299 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l  367 (409)
                      ..|.-.+++.+|...++++...+.. |+...|.-.-+..-.|+...|.+.++.|++.  .|...+-+.+
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~  325 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV  325 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence            3345566777777777777665333 4444443333334467777888887777765  4555544433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.46  E-value=0.00044  Score=44.96  Aligned_cols=55  Identities=16%  Similarity=0.277  Sum_probs=31.4

Q ss_pred             HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          338 QEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       338 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      ..|++++|.++|+++.... +-+...+..+..+|.+.|++++|.++++.+....|+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            4556666666666655543 335555555666666666666666666666655554

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.44  E-value=0.037  Score=45.05  Aligned_cols=182  Identities=13%  Similarity=0.048  Sum_probs=96.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329          191 IVIKAFCEMGILDKAYLVMVEMQKLGVK--PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN  268 (409)
Q Consensus       191 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  268 (409)
                      .....+...|++++|.+.|+.+......  --....-.++.++.+.|+++.|...++.+.+.--.....-+...+.+.+.
T Consensus        10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~   89 (203)
T PF13525_consen   10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY   89 (203)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence            3445567778888888888888764221  12334456667788888888888888887765211111222222222222


Q ss_pred             cCCHhHHHHHHHHHHHcCC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 015329          269 KRRSWQANKLMGLMQRFGI---EPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLA  345 (409)
Q Consensus       269 ~~~~~~a~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  345 (409)
                      ........     ......   .--...+..++.-|-...-..+|...+..+.+.    =...--.+...|.+.|.+..|
T Consensus        90 ~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA  160 (203)
T PF13525_consen   90 YKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAA  160 (203)
T ss_dssp             HHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHH
T ss_pred             HHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHH
Confidence            11111110     000000   001234555666666666666776666655433    111222356678888888888


Q ss_pred             HHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCChHHHH
Q 015329          346 YIMCKDSMKK--NWVPSVDTISALLEGLKKNNQPCKAN  381 (409)
Q Consensus       346 ~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~  381 (409)
                      ..-++.+++.  +.+........++.+|.+.|..+.+.
T Consensus       161 ~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  161 IIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            8888888775  11122345567778888888877554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.42  E-value=0.00054  Score=44.55  Aligned_cols=52  Identities=15%  Similarity=0.085  Sum_probs=25.4

Q ss_pred             cCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 015329           92 GARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLY  144 (409)
Q Consensus        92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  144 (409)
                      ..|++++|.++|+.+....+. +..++..+..+|.+.|++++|.++++++...
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345555555555555444332 3444444555555555555555555555443

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.40  E-value=0.015  Score=54.40  Aligned_cols=64  Identities=14%  Similarity=0.046  Sum_probs=38.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      +...|..+.......|++++|...+++....+  |+...|..+...+...|+.++|.+.+++....
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            33455555444445566666666666666553  45566666666666666666666666665544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.39  E-value=0.012  Score=50.68  Aligned_cols=149  Identities=13%  Similarity=0.057  Sum_probs=87.7

Q ss_pred             ChhHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHHc-CChhhHHHHHHHHHhc----CCC-CCHhhHHHHHHHHHh
Q 015329          201 ILDKAYLVMVEMQK----LGVKPD--VITYTTLISAFYKD-NRPEIGNGLWNLMVCK----GCF-PNLATFNVRIQHLVN  268 (409)
Q Consensus       201 ~~~~a~~~~~~m~~----~g~~~~--~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~  268 (409)
                      ++++|.+.+++..+    .| .++  ...+..+...|-.. |++++|++.|++..+.    |.. .-...+..+...+.+
T Consensus        89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~  167 (282)
T PF14938_consen   89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR  167 (282)
T ss_dssp             THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence            55555555554442    12 111  22344555666666 8999999999887542    311 113456677889999


Q ss_pred             cCCHhHHHHHHHHHHHcCCC-----cCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHH
Q 015329          269 KRRSWQANKLMGLMQRFGIE-----PDEV-TYNLVIKGFCRSGHLDMAKKVYSAMLGR--RLMPN--RKIYQTMIHYLCQ  338 (409)
Q Consensus       269 ~~~~~~a~~~~~~~~~~~~~-----p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~li~~~~~  338 (409)
                      .|++++|.++|+++......     .+.. .+-..+-++...||+..|.+.+++....  ++..+  ......|+.+|- 
T Consensus       168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-  246 (282)
T PF14938_consen  168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-  246 (282)
T ss_dssp             TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-
T ss_pred             hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-
Confidence            99999999999998765432     2222 2333444667789999999999998866  33323  344556677664 


Q ss_pred             cCC---HhHHHHHHHH
Q 015329          339 EGD---FNLAYIMCKD  351 (409)
Q Consensus       339 ~g~---~~~a~~~~~~  351 (409)
                      .|+   ++.+..-|+.
T Consensus       247 ~~D~e~f~~av~~~d~  262 (282)
T PF14938_consen  247 EGDVEAFTEAVAEYDS  262 (282)
T ss_dssp             TT-CCCHHHHCHHHTT
T ss_pred             hCCHHHHHHHHHHHcc
Confidence            444   4444444443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.37  E-value=0.017  Score=42.16  Aligned_cols=89  Identities=16%  Similarity=-0.003  Sum_probs=46.6

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC----HhhHHHHHHHH
Q 015329          193 IKAFCEMGILDKAYLVMVEMQKLGVKPD--VITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN----LATFNVRIQHL  266 (409)
Q Consensus       193 l~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~  266 (409)
                      ..++-..|+.++|+.+|++....|...+  ...+-.+.+.+...|++++|..+++......  |+    ......+..++
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence            3445556666666666666666655432  2234444555666666666666666665431  22    11111222344


Q ss_pred             HhcCCHhHHHHHHHHHH
Q 015329          267 VNKRRSWQANKLMGLMQ  283 (409)
Q Consensus       267 ~~~~~~~~a~~~~~~~~  283 (409)
                      ...|+.++|+..+-...
T Consensus        86 ~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            55566666665554443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.33  E-value=0.014  Score=42.61  Aligned_cols=88  Identities=14%  Similarity=0.042  Sum_probs=45.6

Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHH
Q 015329          264 QHLVNKRRSWQANKLMGLMQRFGIEPD--EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN----RKIYQTMIHYLC  337 (409)
Q Consensus       264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~  337 (409)
                      .++-..|+.++|+.+|++....|....  ...+-.+..++...|++++|..++++....  .|+    ......+.-++.
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHH
Confidence            344556666666666666666654432  223444555566666666666666665544  122    111122223445


Q ss_pred             HcCCHhHHHHHHHHHH
Q 015329          338 QEGDFNLAYIMCKDSM  353 (409)
Q Consensus       338 ~~g~~~~a~~~~~~m~  353 (409)
                      ..|+.++|++.+-...
T Consensus        87 ~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   87 NLGRPKEALEWLLEAL  102 (120)
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            5566666666554433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.33  E-value=0.0024  Score=53.17  Aligned_cols=99  Identities=11%  Similarity=0.095  Sum_probs=68.6

Q ss_pred             hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329           54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH  133 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  133 (409)
                      +.+.+++++|++.|..+++..  +-|...|..-..+|.+.|.++.|++-.+......+. ....|..|..+|...|++++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence            556677778888888777765  455566667777788888888877777777665432 35566677777888888888


Q ss_pred             HHHHHHHhhhcCCCCCHHhHHHHH
Q 015329          134 AMDTFYDMHLYGCKRTVKSLNAAL  157 (409)
Q Consensus       134 a~~~~~~m~~~~~~~~~~~~~~ll  157 (409)
                      |++.|++.++.  .|+-.+|-.=+
T Consensus       168 A~~aykKaLel--dP~Ne~~K~nL  189 (304)
T KOG0553|consen  168 AIEAYKKALEL--DPDNESYKSNL  189 (304)
T ss_pred             HHHHHHhhhcc--CCCcHHHHHHH
Confidence            88887777653  56666654433

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.23  E-value=0.013  Score=43.20  Aligned_cols=100  Identities=13%  Similarity=0.127  Sum_probs=66.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHH
Q 015329          115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIK  194 (409)
Q Consensus       115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~  194 (409)
                      +.++.++|.++++.|+++....+++..=  |+.++...         ..+.          ........|+..+..+++.
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv~   60 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIVH   60 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHHH
Confidence            4566667777777777777777665442  22222110         0000          3345567788888888888


Q ss_pred             HHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcC
Q 015329          195 AFCEMGILDKAYLVMVEMQK-LGVKPDVITYTTLISAFYKDN  235 (409)
Q Consensus       195 ~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~  235 (409)
                      +|+.+|++..|+++++...+ .+++.+..+|..|++-+...-
T Consensus        61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s  102 (126)
T PF12921_consen   61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS  102 (126)
T ss_pred             HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence            88888888888888888775 567777888888887655443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=0.22  Score=47.27  Aligned_cols=311  Identities=13%  Similarity=0.031  Sum_probs=175.0

Q ss_pred             hHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCc--hh-HHHHHHHhhhCCCCCChhHHHHHHHH
Q 015329           48 PPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRF--DY-IEHLLEHQKSLPQGRREGFIMRIMML  124 (409)
Q Consensus        48 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~-a~~~~~~~~~~~~~~~~~~~~~l~~~  124 (409)
                      .-++.++...+.+..|+++-.++...-  ......|......+++..+.  ++ +..+-+++. ... ...-.|..+.+.
T Consensus       441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls-~~~-~~~iSy~~iA~~  516 (829)
T KOG2280|consen  441 EVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS-AKL-TPGISYAAIARR  516 (829)
T ss_pred             hhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhc-ccC-CCceeHHHHHHH
Confidence            345667778889999999999985432  12245666666666665332  22 333333332 222 233345566666


Q ss_pred             HHhcCChHHHHHHHHHhhhcCCC----CCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCC---------CCc-CHHHHH
Q 015329          125 YGKAGMIKHAMDTFYDMHLYGCK----RTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFH---------IQF-DIFSFN  190 (409)
Q Consensus       125 ~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~~-~~~~~~  190 (409)
                      ...+|+++.|..+++.=...+-.    .+..-+...+.-+.+.|+.+....++-.+..+..         ..| ....|.
T Consensus       517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~  596 (829)
T KOG2280|consen  517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYR  596 (829)
T ss_pred             HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHH
Confidence            67889999998887654332211    1233455666667777777666666544433210         011 111122


Q ss_pred             HHHHH--------HHhcCChhHHHHHHH--HHH----hCCCCCCHHHHHHHHHHHHHcCChhhH----------HHHHHH
Q 015329          191 IVIKA--------FCEMGILDKAYLVMV--EMQ----KLGVKPDVITYTTLISAFYKDNRPEIG----------NGLWNL  246 (409)
Q Consensus       191 ~ll~~--------~~~~g~~~~a~~~~~--~m~----~~g~~~~~~~~~~ll~~~~~~~~~~~a----------~~~~~~  246 (409)
                      -+++-        +...++-..+...|.  ...    ..|..|+   .....+.+.+.....-.          +.+.+.
T Consensus       597 ~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~  673 (829)
T KOG2280|consen  597 QFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRT  673 (829)
T ss_pred             HHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            22220        111111111111111  100    0111222   22333444444332111          111222


Q ss_pred             HH-hcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 015329          247 MV-CKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN  325 (409)
Q Consensus       247 m~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~  325 (409)
                      +. +.|.....-+.+--+.-+...|+..+|.++-++.+    -||...|..=+.+++..+++++-+++-+.+.      .
T Consensus       674 Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------s  743 (829)
T KOG2280|consen  674 LEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------S  743 (829)
T ss_pred             HHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------C
Confidence            22 12333344556666777788899999998888776    6788999989999999999988877766544      2


Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 015329          326 RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIM  384 (409)
Q Consensus       326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  384 (409)
                      +.-|.-++.+|.+.|+.++|.+++-+.-     +..    -...+|.+.|++.+|.+.-
T Consensus       744 PIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  744 PIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             CCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence            3457778999999999999999887521     111    4567888889888887653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.17  E-value=0.0028  Score=40.65  Aligned_cols=55  Identities=15%  Similarity=0.165  Sum_probs=29.3

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329          194 KAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVC  249 (409)
Q Consensus       194 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  249 (409)
                      ..+.+.|++++|.+.|++..+.... +...+..+..++...|++++|...|+.+.+
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455555555555555555554422 445555555555555555555555555544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.027  Score=46.22  Aligned_cols=142  Identities=10%  Similarity=-0.025  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHH----
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRI----  263 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll----  263 (409)
                      .-+.++......|.+.-...++.+..+...+.++.....|++.-.+.||.+.|...|+...+..-..|..+++.++    
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            4556677777788899999999999998767788899999999999999999999999887654445555554443    


Q ss_pred             -HHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015329          264 -QHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTM  332 (409)
Q Consensus       264 -~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  332 (409)
                       ..|.-.+++..|...+.+....+.. |....|.=.-+..-.|+...|.+.++.|...  .|...+-+++
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~  325 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV  325 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence             3556678889999999888766432 4444444444444568999999999999977  4444444433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.14  E-value=0.095  Score=42.69  Aligned_cols=49  Identities=8%  Similarity=0.091  Sum_probs=28.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHhHH
Q 015329          297 VIKGFCRSGHLDMAKKVYSAMLGR--RLMPNRKIYQTMIHYLCQEGDFNLA  345 (409)
Q Consensus       297 li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a  345 (409)
                      +...|.+.|.+..|..-++.+++.  +..-.......++.+|.+.|..+.+
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            455677777777777777777665  1111223345666677777766643

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.12  E-value=0.021  Score=43.74  Aligned_cols=70  Identities=17%  Similarity=0.234  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 015329          258 TFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG-----RRLMPNRKI  328 (409)
Q Consensus       258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~  328 (409)
                      ....++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+..+|.+.|+.+..     .|+.|+..+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            34445556666677777777777666654 22566666777777777777777766666532     266666654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.11  E-value=0.013  Score=43.17  Aligned_cols=81  Identities=9%  Similarity=0.064  Sum_probs=41.7

Q ss_pred             HhhHHHHHHHHHhcCCHhHHHHHHHHHHH---------------cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          256 LATFNVRIQHLVNKRRSWQANKLMGLMQR---------------FGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       256 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      ..++..+|.++++.|+.+....+++..-.               ....|+..+..+++.+|+..|++..|.++++...+.
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~   81 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK   81 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            34555566666666666655555554321               122345555555555555555555555555555444


Q ss_pred             -CCCCCHHHHHHHHHHH
Q 015329          321 -RLMPNRKIYQTMIHYL  336 (409)
Q Consensus       321 -~~~p~~~~~~~li~~~  336 (409)
                       ++..+..+|..|++-+
T Consensus        82 Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   82 YPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             cCCCCCHHHHHHHHHHH
Confidence             4444445555555443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.09  E-value=0.0026  Score=41.95  Aligned_cols=60  Identities=10%  Similarity=-0.017  Sum_probs=36.9

Q ss_pred             HHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          334 HYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       334 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      ..|.+.+++++|.++++.++..+ +.+...+.....++.+.|++++|.+.++...+..|+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~   62 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD   62 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence            34556666666666666666653 4455555556666666666666666666666666543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.08  E-value=0.0033  Score=40.92  Aligned_cols=63  Identities=13%  Similarity=0.044  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChhhHHHHHHHHHh
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDN-RPEIGNGLWNLMVC  249 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~  249 (409)
                      +..|..+...+...|++++|+..|++..+.... +...|..+..++.+.| ++++|++.++...+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            445555555666666666666666666554322 4455555555555555 45666655555543

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.06  E-value=0.016  Score=48.96  Aligned_cols=97  Identities=13%  Similarity=0.042  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 015329          259 FNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD--EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR--LMPNRKIYQTMIH  334 (409)
Q Consensus       259 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~  334 (409)
                      |...+..+.+.|++++|...|+.+.+......  ...+-.+..+|...|++++|...|+.+.+.-  -......+-.+..
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            33433333445566666666666555422110  2344455555666666666666666665431  1112233334444


Q ss_pred             HHHHcCCHhHHHHHHHHHHhC
Q 015329          335 YLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       335 ~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      .+...|+.++|.++|++.++.
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            555566666666666665543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.00  E-value=0.11  Score=40.45  Aligned_cols=131  Identities=11%  Similarity=0.042  Sum_probs=83.7

Q ss_pred             CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-cCHHHHHH
Q 015329          218 KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE-PDEVTYNL  296 (409)
Q Consensus       218 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~  296 (409)
                      -|+...--.|.++....|+..+|...|++....-+..|....-.+.++....+++..|...++++.+.... -++.+.-.
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            46666666677777777777777777777776555667777777777777777777777777777665311 01223345


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 015329          297 VIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCK  350 (409)
Q Consensus       297 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  350 (409)
                      +.+.+...|.++.|..-|+.....  .|+...-......+.+.|+.+++..-+.
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~  217 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV  217 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            566777777777777777777655  4444444344444566666665554333

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.91  E-value=0.02  Score=49.99  Aligned_cols=132  Identities=11%  Similarity=-0.012  Sum_probs=82.1

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHH----HcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCH
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMGLMQ----RFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RL-MPNR  326 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~  326 (409)
                      ..|..+-..|.-.|+++.|+...+.-+    +.|-+. -...+..+..++.-.|+++.|.+.|+.-...    |- ....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            345556666666778888776554432    223221 2345667777777788888888877764332    21 1233


Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015329          327 KIYQTMIHYLCQEGDFNLAYIMCKDSMKK-----NWVPSVDTISALLEGLKKNNQPCKANTIMALVQ  388 (409)
Q Consensus       327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  388 (409)
                      ...-+|...|.-..++++|+.++.+-+..     +..-....++.|..+|...|..++|+.+.+.-.
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            44556677777777788887776543321     123355678888888888888888887776654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.099  Score=44.06  Aligned_cols=102  Identities=9%  Similarity=-0.025  Sum_probs=71.8

Q ss_pred             CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHH
Q 015329          253 FPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS---GHLDMAKKVYSAMLGRRLMPNRKIY  329 (409)
Q Consensus       253 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~  329 (409)
                      +-|...|-.|-.+|...|+.+.|..-|.+..+... ++...+..+..++...   .+..++..+|+++...+.. |+...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence            55778888888888888888888888888766532 2455555555544332   2356778888888776433 66666


Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329          330 QTMIHYLCQEGDFNLAYIMCKDSMKKN  356 (409)
Q Consensus       330 ~~li~~~~~~g~~~~a~~~~~~m~~~~  356 (409)
                      ..|...+...|++.+|...|+.|++..
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            677777888888888888888887763

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.86  E-value=0.042  Score=51.41  Aligned_cols=206  Identities=11%  Similarity=0.097  Sum_probs=103.4

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCCHH--hHH--HH--HHHHHccCCHHHHHHHHHhcCccCCCCc
Q 015329          112 GRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLY-GCKRTVK--SLN--AA--LKVLTESRDLKAIQAFLMEVPEKFHIQF  184 (409)
Q Consensus       112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~--~~~--~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~  184 (409)
                      .|.+..|..|.......-.++.|+..|-+.... |++.--.  +..  .+  .....--|++++|++++-++-++     
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr-----  763 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR-----  763 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh-----
Confidence            456677776666666666666676666555432 2211000  000  00  11112246667777776544322     


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329          185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGV--KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVR  262 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  262 (409)
                      |     ..+..+.+.|||-.+.++++.--. +.  .--...|+.+.+.+.....|++|.+.|..-...         ...
T Consensus       764 D-----LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~  828 (1189)
T KOG2041|consen  764 D-----LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ  828 (1189)
T ss_pred             h-----hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence            1     244556666777666665543111 00  011345666666666666666666665443211         123


Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329          263 IQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF  342 (409)
Q Consensus       263 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  342 (409)
                      +.++.+..++++...+...+     +-+....-.+..++...|.-++|.+.+-+.-    .|     ...+..|...+++
T Consensus       829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW  894 (1189)
T KOG2041|consen  829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQW  894 (1189)
T ss_pred             HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHH
Confidence            44444444444444333333     2244455566777777777777776664322    11     2345556666666


Q ss_pred             hHHHHHHHH
Q 015329          343 NLAYIMCKD  351 (409)
Q Consensus       343 ~~a~~~~~~  351 (409)
                      .+|.++-+.
T Consensus       895 ~~avelaq~  903 (1189)
T KOG2041|consen  895 GEAVELAQR  903 (1189)
T ss_pred             HHHHHHHHh
Confidence            666665543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.85  E-value=0.3  Score=43.22  Aligned_cols=79  Identities=9%  Similarity=-0.005  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHH---cCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329          189 FNIVIKAFCEMGILDKAYLVMVEMQKLG---VKPDVITYTTLISAFYK---DNRPEIGNGLWNLMVCKGCFPNLATFNVR  262 (409)
Q Consensus       189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  262 (409)
                      ...++-+|....+++..+++++.+....   +.-+...--...-++-+   .|+.++|++++..+......+++.+|..+
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~  223 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL  223 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence            3344556777788888888888877641   11122222233344445   67778888887775555556677777766


Q ss_pred             HHHHH
Q 015329          263 IQHLV  267 (409)
Q Consensus       263 l~~~~  267 (409)
                      ...|-
T Consensus       224 GRIyK  228 (374)
T PF13281_consen  224 GRIYK  228 (374)
T ss_pred             HHHHH
Confidence            66554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.82  E-value=0.018  Score=44.09  Aligned_cols=72  Identities=14%  Similarity=0.202  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh-----CCCCCCHHHHH
Q 015329          293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK-----KNWVPSVDTIS  365 (409)
Q Consensus       293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~  365 (409)
                      ....++..+...|++++|..+.+.+...... |...|..+|.+|...|+..+|.++|+++.+     .|+.|+..+-.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            4455666777788888888888887776433 667788888888888888888888776643     37777776543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.72  E-value=0.17  Score=38.39  Aligned_cols=41  Identities=22%  Similarity=0.270  Sum_probs=17.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329          192 VIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK  233 (409)
Q Consensus       192 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~  233 (409)
                      ++..+...+.......+++.+...+. .+...++.++..|++
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~   53 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK   53 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence            33444444444444444444444332 233344444444443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.71  E-value=0.42  Score=42.75  Aligned_cols=134  Identities=16%  Similarity=0.222  Sum_probs=92.1

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFG-IEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIY-QTMIH  334 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~  334 (409)
                      ..|...+.+..+....+.|..+|-+..+.| +.+++..+++++..++ .|+...|..+|+--...  -||...| +..+.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~  474 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL  474 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence            456666777777777888888888888877 5667777888887665 46777888888754433  3454444 34555


Q ss_pred             HHHHcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          335 YLCQEGDFNLAYIMCKDSMKKNWVPS--VDTISALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       335 ~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      -+...++-+.|..+|+..+++ +..+  ...|..++.--..-|+...+..+-+.+.+..|.-
T Consensus       475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe  535 (660)
T COG5107         475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE  535 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence            666778878888888755443 2223  4578888887788888888877777777766543

>PRK15331 chaperone protein SicA; Provisional

Probab=96.68  E-value=0.1  Score=39.93  Aligned_cols=87  Identities=7%  Similarity=-0.117  Sum_probs=54.1

Q ss_pred             HHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 015329          266 LVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLA  345 (409)
Q Consensus       266 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  345 (409)
                      +...|++++|..+|.-+.-.+.. +..-+..|..+|-..+++++|...|......+.. |+..+-....++...|+.+.|
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A  124 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA  124 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence            34567777777777776655433 4455566666666677777777777665544322 333455566667777777777


Q ss_pred             HHHHHHHHh
Q 015329          346 YIMCKDSMK  354 (409)
Q Consensus       346 ~~~~~~m~~  354 (409)
                      ...|....+
T Consensus       125 ~~~f~~a~~  133 (165)
T PRK15331        125 RQCFELVNE  133 (165)
T ss_pred             HHHHHHHHh
Confidence            777766555

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.67  E-value=0.053  Score=45.04  Aligned_cols=105  Identities=18%  Similarity=0.224  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--CCCCHHHHHHHH
Q 015329          293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRL--MPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN--WVPSVDTISALL  368 (409)
Q Consensus       293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~l~  368 (409)
                      .|+.-+..| +.|++..|...|...++...  .-....+-.|..++...|++++|..+|..+.+.-  -+--++.+..|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            566666544 56778888888888887621  1123345567888888888888888888877641  122346777888


Q ss_pred             HHHHhCCChHHHHHHHHHHHhcCCCCCchh
Q 015329          369 EGLKKNNQPCKANTIMALVQRRVPHFSSNQ  398 (409)
Q Consensus       369 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  398 (409)
                      .+..+.|+.++|...|+++.+..|..+...
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            888889999999999999988888776543

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.64  E-value=0.16  Score=37.11  Aligned_cols=141  Identities=12%  Similarity=0.064  Sum_probs=82.7

Q ss_pred             HHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhH
Q 015329          125 YGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDK  204 (409)
Q Consensus       125 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  204 (409)
                      ..-.|.+++..++..+....   -+..-+|.++--....-+-+.+.++++.+-.-+++.+              .|++..
T Consensus        12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~--------------C~NlKr   74 (161)
T PF09205_consen   12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK--------------CGNLKR   74 (161)
T ss_dssp             HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG---------------S-THH
T ss_pred             HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh--------------hcchHH
Confidence            34567788888888887653   3556677777666666666677777765544433222              233333


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329          205 AYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQR  284 (409)
Q Consensus       205 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  284 (409)
                      ....+-.+-     .+.......++.....|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+
T Consensus        75 Vi~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe  148 (161)
T PF09205_consen   75 VIECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE  148 (161)
T ss_dssp             HHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            333332221     244556667777788888888888888877633 66777777888888888888888888888888


Q ss_pred             cCCC
Q 015329          285 FGIE  288 (409)
Q Consensus       285 ~~~~  288 (409)
                      .|++
T Consensus       149 kG~k  152 (161)
T PF09205_consen  149 KGLK  152 (161)
T ss_dssp             TT-H
T ss_pred             hchH
Confidence            7764

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.64  E-value=0.42  Score=44.71  Aligned_cols=244  Identities=7%  Similarity=-0.016  Sum_probs=118.0

Q ss_pred             CCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHH-------------HHHhcCC--hHHHHHHHHHh
Q 015329           77 IENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMM-------------LYGKAGM--IKHAMDTFYDM  141 (409)
Q Consensus        77 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-------------~~~~~~~--~~~a~~~~~~m  141 (409)
                      .+.+..+.+-+..+...|.+++|.++-      .......-|..|..             +|.+-.+  +-+.+.-++++
T Consensus       553 ~~~evp~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~  626 (1081)
T KOG1538|consen  553 SAVEVPQSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEER  626 (1081)
T ss_pred             ecccccccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            344444555556667777777765542      11222222332222             3333322  22333344556


Q ss_pred             hhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHH------------
Q 015329          142 HLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVM------------  209 (409)
Q Consensus       142 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~------------  209 (409)
                      ++.|-.|+...   +...++-.|.+.+|-++|.+    .|..      |..+..|-....+|.|.+++            
T Consensus       627 k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~----~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~  693 (1081)
T KOG1538|consen  627 KKRGETPNDLL---LADVFAYQGKFHEAAKLFKR----SGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLI  693 (1081)
T ss_pred             HhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH----cCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence            66665566542   34556667777777777733    2322      11223333333333333332            


Q ss_pred             HHHHh--CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHH------HHhcCC---CCCHhhHHHHHHHHHhcCCHhHHHHH
Q 015329          210 VEMQK--LGVKPDVITYTTLISAFYKDNRPEIGNGLWNL------MVCKGC---FPNLATFNVRIQHLVNKRRSWQANKL  278 (409)
Q Consensus       210 ~~m~~--~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~------m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~  278 (409)
                      ++-.+  .+++-.    .+..+.+...|+.++|..+.-+      +.+-+-   ..+..+...+...+-+...+.-|-++
T Consensus       694 RKRA~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeI  769 (1081)
T KOG1538|consen  694 RKRADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEI  769 (1081)
T ss_pred             HHHHHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHH
Confidence            21111  011111    1233444556666666554311      111111   12333444444445556666777777


Q ss_pred             HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHHHHcCCHhHHHH
Q 015329          279 MGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRK-----------IYQTMIHYLCQEGDFNLAYI  347 (409)
Q Consensus       279 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------~~~~li~~~~~~g~~~~a~~  347 (409)
                      |.+|-..         ..+++.....+++.+|..+-+...+.  .||+.           -|...-++|.++|+-.+|.+
T Consensus       770 F~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~  838 (1081)
T KOG1538|consen  770 FLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQ  838 (1081)
T ss_pred             HHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHH
Confidence            7776421         34666777788888888877765543  23321           12233455666666666666


Q ss_pred             HHHHHHh
Q 015329          348 MCKDSMK  354 (409)
Q Consensus       348 ~~~~m~~  354 (409)
                      +++++..
T Consensus       839 vLeQLtn  845 (1081)
T KOG1538|consen  839 VLEQLTN  845 (1081)
T ss_pred             HHHHhhh
Confidence            6666544

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.60  E-value=0.7  Score=44.03  Aligned_cols=284  Identities=12%  Similarity=0.112  Sum_probs=167.0

Q ss_pred             HHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCC--hHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc
Q 015329           85 DTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGM--IKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE  162 (409)
Q Consensus        85 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  162 (409)
                      .+|+-+...+.+..|+++-..+...... ...+|.....-+.+..+  -+++.+..++=..... .....|..+.+-...
T Consensus       442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~  519 (829)
T KOG2280|consen  442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQ  519 (829)
T ss_pred             hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHh
Confidence            3577788889999999998877533222 25667777777766632  2233333332222212 334567778888888


Q ss_pred             cCCHHHHHHHHHhcCccCCCC----cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH----------
Q 015329          163 SRDLKAIQAFLMEVPEKFHIQ----FDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLI----------  228 (409)
Q Consensus       163 ~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll----------  228 (409)
                      .|+.+.|..++ +...+.+..    .+..-+...+.-+.+.||.+....++-.+.+.   .+...|...+          
T Consensus       520 ~GR~~LA~kLl-e~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l~~~p~a~~lY  595 (829)
T KOG2280|consen  520 EGRFELARKLL-ELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTLRNQPLALSLY  595 (829)
T ss_pred             cCcHHHHHHHH-hcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHHHhchhhhHHH
Confidence            99999999998 443332211    12233556677788888888888887777653   1222222211          


Q ss_pred             HHHHH------------cCChhhHHHHHH--HHH----hcCCCCCHhhHHHHHHHHHhcCC----------HhHHHHHHH
Q 015329          229 SAFYK------------DNRPEIGNGLWN--LMV----CKGCFPNLATFNVRIQHLVNKRR----------SWQANKLMG  280 (409)
Q Consensus       229 ~~~~~------------~~~~~~a~~~~~--~m~----~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~  280 (409)
                      .-+++            .++-.++...|.  ...    ..|..|+.   ...-..+.+...          ..+-+.+.+
T Consensus       596 ~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~  672 (829)
T KOG2280|consen  596 RQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQR  672 (829)
T ss_pred             HHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            11111            111111111110  000    01222222   223334443332          112222333


Q ss_pred             HHH-HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 015329          281 LMQ-RFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP  359 (409)
Q Consensus       281 ~~~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  359 (409)
                      .+. +.|......+.+--+.-+...|+..+|.++-.+.+    -||-..|..=+.+++..+++++-+++-+.+.      
T Consensus       673 ~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------  742 (829)
T KOG2280|consen  673 TLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------  742 (829)
T ss_pred             HHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------
Confidence            332 22333444455666677778899999999888766    5788999999999999999999888766532      


Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 015329          360 SVDTISALLEGLKKNNQPCKANTIMALV  387 (409)
Q Consensus       360 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~  387 (409)
                      .+.-|.-++.+|.+.|+.++|.+++-+.
T Consensus       743 sPIGy~PFVe~c~~~~n~~EA~KYiprv  770 (829)
T KOG2280|consen  743 SPIGYLPFVEACLKQGNKDEAKKYIPRV  770 (829)
T ss_pred             CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence            2556778899999999999999987654

>PRK15331 chaperone protein SicA; Provisional

Probab=96.60  E-value=0.22  Score=38.21  Aligned_cols=86  Identities=10%  Similarity=-0.004  Sum_probs=49.1

Q ss_pred             HHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 015329          232 YKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAK  311 (409)
Q Consensus       232 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~  311 (409)
                      ...|++++|..+|.-+...+ .-+..-|..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.|.
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence            35666666666666666543 234444455555555666666666666665444322 3333444555666666666666


Q ss_pred             HHHHHHHh
Q 015329          312 KVYSAMLG  319 (409)
Q Consensus       312 ~~~~~m~~  319 (409)
                      ..|.....
T Consensus       126 ~~f~~a~~  133 (165)
T PRK15331        126 QCFELVNE  133 (165)
T ss_pred             HHHHHHHh
Confidence            66666655

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.58  E-value=0.022  Score=37.44  Aligned_cols=55  Identities=13%  Similarity=0.108  Sum_probs=29.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          300 GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       300 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      .|.+.+++++|.++++.+...+.. +...+.....++...|++++|.+.|+...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            445555566666666655554322 4444555555555566666666665555544

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.54  E-value=0.26  Score=42.52  Aligned_cols=130  Identities=15%  Similarity=0.179  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc--cCCH----HHHHHHHHhcCccCCC--CcCHHHHHHHHHHHHhcCC-
Q 015329          131 IKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE--SRDL----KAIQAFLMEVPEKFHI--QFDIFSFNIVIKAFCEMGI-  201 (409)
Q Consensus       131 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~----~~a~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~-  201 (409)
                      +++.+.+++.|.+.|.+.+..+|-+.......  ..++    ..+..+++.|.++..+  .++...+..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            45566788888888888887776554333333  2222    6677777777655443  3344455555443  2233 


Q ss_pred             ---hhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCC--hhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329          202 ---LDKAYLVMVEMQKLGVKPDV--ITYTTLISAFYKDNR--PEIGNGLWNLMVCKGCFPNLATFNVR  262 (409)
Q Consensus       202 ---~~~a~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l  262 (409)
                         .+.++.+|+.+.+.|+..+-  ...+.++..+.....  ...+.++++.+.+.|+++....|..+
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence               24556666666666654332  222333322221111  33566666666666666665555443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.51  E-value=0.032  Score=48.83  Aligned_cols=130  Identities=9%  Similarity=-0.039  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHH----hcCCC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC-CcCHH
Q 015329          223 TYTTLISAFYKDNRPEIGNGLWNLMV----CKGCF-PNLATFNVRIQHLVNKRRSWQANKLMGLMQRF----GI-EPDEV  292 (409)
Q Consensus       223 ~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~  292 (409)
                      .|..|.+.|.-.|+++.|+...+.-.    +.|-. .....+..+-.++.-.|+++.|.+.|+.-...    |- .....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            45555555666677777766554422    22211 12345566666777777777777777654322    21 11233


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329          293 TYNLVIKGFCRSGHLDMAKKVYSAMLGR-----RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS  352 (409)
Q Consensus       293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  352 (409)
                      +.-+|..+|.-..++++|+.++.+-...     ...-....|.+|..+|...|.-++|+.+...-
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h  341 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH  341 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            4445666666666777777766543221     11224456677777777777777776655543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.47  E-value=0.01  Score=39.64  Aligned_cols=22  Identities=23%  Similarity=0.299  Sum_probs=8.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHH
Q 015329          295 NLVIKGFCRSGHLDMAKKVYSA  316 (409)
Q Consensus       295 ~~li~~~~~~g~~~~a~~~~~~  316 (409)
                      +.+...|...|++++|+..|++
T Consensus         9 ~~la~~~~~~~~~~~A~~~~~~   30 (78)
T PF13424_consen    9 NNLARVYRELGRYDEALDYYEK   30 (78)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Confidence            3333344444444444444433

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.46  E-value=0.16  Score=46.60  Aligned_cols=159  Identities=12%  Similarity=0.055  Sum_probs=82.8

Q ss_pred             HHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHH
Q 015329           88 SRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLK  167 (409)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~  167 (409)
                      +...-.++++++.++.+.-.-. +..+......++..+-+.|-.+.|+++-.+-.            .-.....+.|+++
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~  335 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD  335 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred             HHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence            3444556666665555421111 11234556667777777777777776654332            2244556677777


Q ss_pred             HHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 015329          168 AIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLM  247 (409)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m  247 (409)
                      .|.++.++.       .+...|..|.....+.|+++-|.+.|.+..+         |..|+-.|.-.|+.+.-.++.+..
T Consensus       336 ~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a  399 (443)
T PF04053_consen  336 IALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA  399 (443)
T ss_dssp             HHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence            776665322       1455677777777777777777777666432         344555556666666666666555


Q ss_pred             HhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 015329          248 VCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGL  281 (409)
Q Consensus       248 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  281 (409)
                      ...|-      ++....++.-.|+.++..+++.+
T Consensus       400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  400 EERGD------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            55541      44455555556666666655544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.44  E-value=0.011  Score=39.61  Aligned_cols=64  Identities=13%  Similarity=0.098  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----C-CCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329          326 RKIYQTMIHYLCQEGDFNLAYIMCKDSMKK----N-WVPS-VDTISALLEGLKKNNQPCKANTIMALVQR  389 (409)
Q Consensus       326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  389 (409)
                      ..+|+.+...|...|++++|+..|++.++.    | -.|+ ..++..+..++...|++++|++.+++..+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            356888999999999999999999988753    2 1122 56788888999999999999999998764

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.36  E-value=0.44  Score=44.37  Aligned_cols=163  Identities=13%  Similarity=0.058  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC------HhhHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCcCHHH
Q 015329          224 YTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN------LATFNVRIQHLVN----KRRSWQANKLMGLMQRFGIEPDEVT  293 (409)
Q Consensus       224 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~  293 (409)
                      +..+++..+-.|+-+.+++.+.+-.+.+-...      .-.|+.++..++.    ..+.+.|.+++..+.+.  -|+...
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l  268 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL  268 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence            34566666778999999998888766432211      2344555544443    45678899999999877  567666


Q ss_pred             HHHH-HHHHHhcCCHHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH-
Q 015329          294 YNLV-IKGFCRSGHLDMAKKVYSAMLGR--RL-MPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALL-  368 (409)
Q Consensus       294 ~~~l-i~~~~~~g~~~~a~~~~~~m~~~--~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~-  368 (409)
                      |... .+.+...|++++|.+.|++....  .. +.....+--+...+.-.++|++|.+.|..+.+.. ..+..+|..+. 
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a  347 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence            5444 34567789999999999976642  11 1233345556677888999999999999998864 33455555544 


Q ss_pred             HHHHhCCCh-------HHHHHHHHHHHh
Q 015329          369 EGLKKNNQP-------CKANTIMALVQR  389 (409)
Q Consensus       369 ~~~~~~g~~-------~~a~~~~~~~~~  389 (409)
                      .++...|+.       ++|.+++.++..
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            445567777       888888887643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.35  E-value=0.97  Score=42.86  Aligned_cols=292  Identities=12%  Similarity=0.072  Sum_probs=134.5

Q ss_pred             CChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhC-CCCCChhHHHHHHHHHHhcCChHHHHH
Q 015329           58 RDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSL-PQGRREGFIMRIMMLYGKAGMIKHAMD  136 (409)
Q Consensus        58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~  136 (409)
                      |.+++|.+++-.+-+++          ..|....+.|++-.+.++++.-... ....-...++.+...++....|++|.+
T Consensus       748 g~feeaek~yld~drrD----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~  817 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDADRRD----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK  817 (1189)
T ss_pred             cchhHhhhhhhccchhh----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555554443332          2445555666666665555442211 111124455666666666666666666


Q ss_pred             HHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 015329          137 TFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLG  216 (409)
Q Consensus       137 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g  216 (409)
                      .|..-..         -...+.++....++++.+.+...+.++      ....-.+..++.+.|.-++|.+.|-+-..  
T Consensus       818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~------s~llp~~a~mf~svGMC~qAV~a~Lr~s~--  880 (1189)
T KOG2041|consen  818 YYSYCGD---------TENQIECLYRLELFGELEVLARTLPED------SELLPVMADMFTSVGMCDQAVEAYLRRSL--  880 (1189)
T ss_pred             HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc------cchHHHHHHHHHhhchHHHHHHHHHhccC--
Confidence            6654321         123445555555555655555444433      33344555666666666666665533221  


Q ss_pred             CCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-----------CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH-
Q 015329          217 VKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGC-----------FPNLATFNVRIQHLVNKRRSWQANKLMGLMQR-  284 (409)
Q Consensus       217 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-  284 (409)
                        |     ...+..|...++|.+|.++-+...-..+           -.+..+ ---|..+.+.|+.-+|-+++.+|.+ 
T Consensus       881 --p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~  952 (1189)
T KOG2041|consen  881 --P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAER  952 (1189)
T ss_pred             --c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHH
Confidence              1     1233455555556555554433211000           001111 1234556666666666666666632 


Q ss_pred             ---cCCCcCH----HHHHHH-HHHH----------HhcCCHHHHHHHHHHHHhC---CC----CCCHHHHH--HHHHHHH
Q 015329          285 ---FGIEPDE----VTYNLV-IKGF----------CRSGHLDMAKKVYSAMLGR---RL----MPNRKIYQ--TMIHYLC  337 (409)
Q Consensus       285 ---~~~~p~~----~~~~~l-i~~~----------~~~g~~~~a~~~~~~m~~~---~~----~p~~~~~~--~li~~~~  337 (409)
                         .+.++-.    +...++ +.-+          -+.|..++|..+++...-.   .+    --....|.  .|.+--.
T Consensus       953 e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql 1032 (1189)
T KOG2041|consen  953 EQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQL 1032 (1189)
T ss_pred             HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence               2332211    111111 1111          1234455555444332111   00    01223333  3334445


Q ss_pred             HcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 015329          338 QEGDFNLAYIMCKDSMKK-NWVPSVDTISALLEGLKKNNQPCKANTIM  384 (409)
Q Consensus       338 ~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  384 (409)
                      ..|.++.|++.--.+.+. .+-|....|..+.-+-+....+-..-+.|
T Consensus      1033 ~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1033 FEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred             HhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence            567777777654444332 35677777777665444444443333333

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.35  E-value=0.25  Score=36.10  Aligned_cols=139  Identities=12%  Similarity=0.125  Sum_probs=80.4

Q ss_pred             HHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 015329          232 YKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAK  311 (409)
Q Consensus       232 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~  311 (409)
                      .-.|.++++.++..+.....   +..-+|-+|.-....-+-+-..++++.+-+.   .|..          .+|++....
T Consensus        13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrVi   76 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRVI   76 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHHH
T ss_pred             HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHHH
Confidence            34678888888888877754   5555666665555555555555555554321   1211          233444433


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329          312 KVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV  391 (409)
Q Consensus       312 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  391 (409)
                      ..+-.+-     .+...+...+..+...|.-++-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.++-+++
T Consensus        77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            3332211     244556667778888888888888888876543 7888888888888888888888888888887776


Q ss_pred             C
Q 015329          392 P  392 (409)
Q Consensus       392 ~  392 (409)
                      .
T Consensus       151 ~  151 (161)
T PF09205_consen  151 L  151 (161)
T ss_dssp             -
T ss_pred             h
Confidence            4

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.32  E-value=0.1  Score=43.83  Aligned_cols=150  Identities=15%  Similarity=0.131  Sum_probs=101.5

Q ss_pred             HHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHH---Hcc
Q 015329           87 VSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVL---TES  163 (409)
Q Consensus        87 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~  163 (409)
                      .......|++.+|..+|+........ +......++.+|...|+.+.|..++..+....-.........-|..+   ...
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~  219 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT  219 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence            34567889999999999998876554 35555668999999999999999999986543222222222223334   444


Q ss_pred             CCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhhHH
Q 015329          164 RDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL--GVKPDVITYTTLISAFYKDNRPEIGN  241 (409)
Q Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~~~a~  241 (409)
                      ++....+.-+.   ..   +-|...-..+...+...|+.+.|.+.+-.+.+.  |.. |...-..+++.+.-.|.-+.+.
T Consensus       220 ~~~~~l~~~~a---ad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~  292 (304)
T COG3118         220 PEIQDLQRRLA---AD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLV  292 (304)
T ss_pred             CCHHHHHHHHH---hC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHH
Confidence            55555555442   22   126667777888999999999999887777653  444 6777788888887777555444


Q ss_pred             HHH
Q 015329          242 GLW  244 (409)
Q Consensus       242 ~~~  244 (409)
                      ..+
T Consensus       293 ~~~  295 (304)
T COG3118         293 LAY  295 (304)
T ss_pred             HHH
Confidence            333

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.25  E-value=0.11  Score=43.28  Aligned_cols=51  Identities=27%  Similarity=0.363  Sum_probs=37.3

Q ss_pred             CcCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329          183 QFDIFSFNIVIKAFCEM-----GILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK  233 (409)
Q Consensus       183 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~  233 (409)
                      +.|..+|-..+..+...     +.++-....++.|.+.|+.-|..+|+.|++.+-+
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK  119 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK  119 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence            44777777777776543     5567777778888888888888888888876643

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.21  E-value=0.48  Score=39.99  Aligned_cols=208  Identities=13%  Similarity=0.042  Sum_probs=130.5

Q ss_pred             HHHHHHHHHhhcCCCCCCccchHH--HHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 015329           61 EKLFQLFKANAHNRIVIENKYAFE--DTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTF  138 (409)
Q Consensus        61 ~~a~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  138 (409)
                      +.--.+--.+.-+.  .|+...+.  .-+..+-..-.-+...++++.....   .....+ .-.......|++.+|..+|
T Consensus        84 D~~p~vAaqfgiqs--IPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~---~~e~~~-~~~~~~~~~e~~~~a~~~~  157 (304)
T COG3118          84 DAEPMVAAQFGVQS--IPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA---EEEEAL-AEAKELIEAEDFGEAAPLL  157 (304)
T ss_pred             CcchhHHHHhCcCc--CCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh---HHHHHH-HHhhhhhhccchhhHHHHH
Confidence            33333444443333  35554443  2345554444444566666665433   122222 2344567899999999999


Q ss_pred             HHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 015329          139 YDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK  218 (409)
Q Consensus       139 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~  218 (409)
                      +...... +-+...--.+..+|...|+.+.+..++..+..+..- ........-|..+.+.....+...+-.+.-.   .
T Consensus       158 ~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---d  232 (304)
T COG3118         158 KQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLEQAAATPEIQDLQRRLAA---D  232 (304)
T ss_pred             HHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---C
Confidence            9988765 445667778999999999999999999777654221 1122233445666666666666666666555   3


Q ss_pred             C-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 015329          219 P-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKG-CFPNLATFNVRIQHLVNKRRSWQANKLM  279 (409)
Q Consensus       219 ~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~  279 (409)
                      | |...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+.-.|..+.+..-+
T Consensus       233 Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~  295 (304)
T COG3118         233 PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY  295 (304)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence            4 66666778888999999999988776665542 2345666777888887777444443333

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.19  E-value=0.055  Score=44.94  Aligned_cols=106  Identities=13%  Similarity=0.197  Sum_probs=62.5

Q ss_pred             CCCHHhHHHHHHHHHcc-----CCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 015329          147 KRTVKSLNAALKVLTES-----RDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV  221 (409)
Q Consensus       147 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~  221 (409)
                      +.|-.+|-..+..+...     +.++-....++.| ..+|+..|..+|+.|++.+-+-.                +.|. 
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m-~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-  125 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYM-KEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-  125 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH-HHhcchhhHHHHHHHHHhCcccc----------------cccH-
Confidence            55677777777777554     3334444444333 56788888888888887665422                1222 


Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 015329          222 ITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRS  272 (409)
Q Consensus       222 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  272 (409)
                      ..|..+.-.|-  .+-+-++.++++|...|+.||-.+-..+++++.+.+-.
T Consensus       126 nvfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  126 NVFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             HHHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence            12222222221  22334667777777777777777777777777766543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.13  E-value=0.63  Score=38.53  Aligned_cols=189  Identities=11%  Similarity=0.069  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGV--KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH  265 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  265 (409)
                      .|+--+ .-.+.|++++|.+.|+.+....+  +-...+--.++-++.+.+++++|+...++..+.--.....-|-..|.+
T Consensus        37 LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg  115 (254)
T COG4105          37 LYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG  115 (254)
T ss_pred             HHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence            344333 34567888888888888876432  123445555666777788888888888777764322223334444444


Q ss_pred             HHhc-------CCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329          266 LVNK-------RRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ  338 (409)
Q Consensus       266 ~~~~-------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  338 (409)
                      .+.-       .|...+..-+..+.            .++.-|-+..=...|..-...+...    =...=..+.+-|.+
T Consensus       116 Ls~~~~i~~~~rDq~~~~~A~~~f~------------~~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~k  179 (254)
T COG4105         116 LSYFFQIDDVTRDQSAARAAFAAFK------------ELVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLK  179 (254)
T ss_pred             HHHhccCCccccCHHHHHHHHHHHH------------HHHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            4421       12222222222221            1222222222122222222222111    00001234566888


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          339 EGDFNLAYIMCKDSMKKNWVPS---VDTISALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       339 ~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      .|.+-.|..-+++|++. .+-+   ...+-.+..+|...|..++|.+.-+-+..+.|+.
T Consensus       180 r~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         180 RGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             hcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            88888888888888876 3333   3455666688889999999988877666665554

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.10  E-value=0.92  Score=40.17  Aligned_cols=254  Identities=10%  Similarity=-0.014  Sum_probs=144.0

Q ss_pred             hhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329           54 LKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH  133 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  133 (409)
                      ..+..++..|++.+..+++..  +-+...|..-...+...|+++++.--.+.-.+...... ......-+++...++..+
T Consensus        59 ~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~-k~~~r~~~c~~a~~~~i~  135 (486)
T KOG0550|consen   59 FYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS-KGQLREGQCHLALSDLIE  135 (486)
T ss_pred             HHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc-ccccchhhhhhhhHHHHH
Confidence            445678888999999988876  33444566666667777888877766655544433211 122223333333444444


Q ss_pred             HHHHHH---------------HhhhcCC-CCCHHhHHHHH-HHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHH--
Q 015329          134 AMDTFY---------------DMHLYGC-KRTVKSLNAAL-KVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIK--  194 (409)
Q Consensus       134 a~~~~~---------------~m~~~~~-~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~--  194 (409)
                      |.+.|+               ......- +|...+|..+- .++.-.++.+.+...--.+++-..    ...+..+++  
T Consensus       136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~----~n~~al~vrg~  211 (486)
T KOG0550|consen  136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA----TNAEALYVRGL  211 (486)
T ss_pred             HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc----chhHHHHhccc
Confidence            443333               2211111 23333443332 234455676666665434433311    122333333  


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHHHH-------------HHHHHHHHHcCChhhHHHHHHHHHhc---CCCCCHhh
Q 015329          195 AFCEMGILDKAYLVMVEMQKLGVKPDVITY-------------TTLISAFYKDNRPEIGNGLWNLMVCK---GCFPNLAT  258 (409)
Q Consensus       195 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-------------~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~  258 (409)
                      ++.-.++.+.+...|++.+..+  |+...-             ..=.+-..+.|++..|.+.|.+.+..   +..++...
T Consensus       212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl  289 (486)
T KOG0550|consen  212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL  289 (486)
T ss_pred             ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence            4456778999999999998764  443321             12223345678888888888887753   24456666


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhC
Q 015329          259 FNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLV---IKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       259 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      |.....+..+.|+..+|+.--+...+.    |..-...+   ..++...+++++|.+-|+...+.
T Consensus       290 Y~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  290 YGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            766777777888888888777766643    33222222   23445567788888888777665

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.00  E-value=0.46  Score=43.67  Aligned_cols=57  Identities=14%  Similarity=0.265  Sum_probs=25.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      +...|..|.....+.|+++-|.+.|.+..+         |..|+-.|.-.|+.+...++.+.....
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            344455555555555555555555443321         333444444444444444444443333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.99  E-value=1.1  Score=39.93  Aligned_cols=102  Identities=11%  Similarity=0.048  Sum_probs=59.5

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC---CCCCHHhHHHHHHHHHc---cCCHHHHHHHHHhcCccCCCCcC
Q 015329          112 GRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYG---CKRTVKSLNAALKVLTE---SRDLKAIQAFLMEVPEKFHIQFD  185 (409)
Q Consensus       112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~  185 (409)
                      ..+..+...++-+|....+++..+++.+.+....   +.-+..+-....-++-+   .|+.+.|..++..+... .-.++
T Consensus       138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~  216 (374)
T PF13281_consen  138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPD  216 (374)
T ss_pred             hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCC
Confidence            3355666677778888888888888888887531   11122222233444555   67778888887663332 23455


Q ss_pred             HHHHHHHHHHHHhc---------CChhHHHHHHHHHHh
Q 015329          186 IFSFNIVIKAFCEM---------GILDKAYLVMVEMQK  214 (409)
Q Consensus       186 ~~~~~~ll~~~~~~---------g~~~~a~~~~~~m~~  214 (409)
                      ..+|..+...|-..         ..+++|+..|.+.-+
T Consensus       217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe  254 (374)
T PF13281_consen  217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE  254 (374)
T ss_pred             hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence            66666666655321         124556666655544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.96  E-value=0.23  Score=44.98  Aligned_cols=59  Identities=8%  Similarity=0.073  Sum_probs=30.8

Q ss_pred             HHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015329          155 AALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQ  213 (409)
Q Consensus       155 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  213 (409)
                      .+..++.+.|+.++|.+.++++++.....-.......|+.++...+.+.++..++.+..
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            34444555566666666555555443221123345555566666666666666655544

The molecular function of this protein is uncertain.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.95  E-value=0.94  Score=39.00  Aligned_cols=101  Identities=11%  Similarity=0.054  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 015329          187 FSFNIVIKAFCEMGILD---KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRI  263 (409)
Q Consensus       187 ~~~~~ll~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  263 (409)
                      .++..++.+|...+..+   +|.++++.+...... ...++-.-+..+.+.++.+.+.+++..|...- ......+..++
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l  162 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence            34666667777666544   445555555443222 24445455566666777777777777777652 22334444444


Q ss_pred             HHH---HhcCCHhHHHHHHHHHHHcCCCcC
Q 015329          264 QHL---VNKRRSWQANKLMGLMQRFGIEPD  290 (409)
Q Consensus       264 ~~~---~~~~~~~~a~~~~~~~~~~~~~p~  290 (409)
                      ..+   .... ...+...+..+....+.|.
T Consensus       163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~  191 (278)
T PF08631_consen  163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSS  191 (278)
T ss_pred             HHHHHHHhhC-cHHHHHHHHHHHHHHhCCC
Confidence            444   2222 3344444544443333333

It is also involved in sporulation [].

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.93  E-value=1.3  Score=40.42  Aligned_cols=189  Identities=14%  Similarity=0.028  Sum_probs=97.3

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHh
Q 015329          195 AFCEMGILDKAYLVMVEMQKLGVKPDVI-TYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSW  273 (409)
Q Consensus       195 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~  273 (409)
                      -.-+..+...-++.-.+..+.  .||.. .|..|  +--......++++++++..+.|-    ..+.       +.....
T Consensus       177 ~AWRERnp~aRIkaA~eALei--~pdCAdAYILL--AEEeA~Ti~Eae~l~rqAvkAgE----~~lg-------~s~~~~  241 (539)
T PF04184_consen  177 KAWRERNPQARIKAAKEALEI--NPDCADAYILL--AEEEASTIVEAEELLRQAVKAGE----ASLG-------KSQFLQ  241 (539)
T ss_pred             HHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc--ccccccCHHHHHHHHHHHHHHHH----Hhhc-------hhhhhh
Confidence            333444555555555555543  33332 22222  22234557788888888766541    1110       000000


Q ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329          274 QANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM-PNRKIYQTMIHYLCQEGDFNLAYIMCKDS  352 (409)
Q Consensus       274 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m  352 (409)
                      ..-..++........+-..+=..+..++-+.|+.++|.+.+++|.+.... -+..+...|+.++...+.+.++..++.+.
T Consensus       242 ~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  242 HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            00011112222222222333344566667788888888888888765221 23446677888888888888888888775


Q ss_pred             HhCCCCCC-HHHHHHHHHHHHhCCC---------------hHHHHHHHHHHHhcCCCCCchh
Q 015329          353 MKKNWVPS-VDTISALLEGLKKNNQ---------------PCKANTIMALVQRRVPHFSSNQ  398 (409)
Q Consensus       353 ~~~~~~~~-~~~~~~l~~~~~~~g~---------------~~~a~~~~~~~~~~~~~~~~~~  398 (409)
                      -+...+.+ ..+|+..+-.....++               -..|.+.+.++.+.+|..++-.
T Consensus       322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL  383 (539)
T PF04184_consen  322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL  383 (539)
T ss_pred             ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence            43322222 2345554433222222               1345677888888887766543

The molecular function of this protein is uncertain.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.90  E-value=0.57  Score=36.15  Aligned_cols=125  Identities=10%  Similarity=0.029  Sum_probs=60.0

Q ss_pred             hhhcCChHHHHHHHHHhhcCCCCCC-ccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChh-HHHH--HHHHHHhcC
Q 015329           54 LKAERDPEKLFQLFKANAHNRIVIE-NKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREG-FIMR--IMMLYGKAG  129 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~~  129 (409)
                      +++.+.+++|+.-|..+.+.| ... .....-.........|+...|...|+++-.....|... -...  -...+..+|
T Consensus        68 lA~~~k~d~Alaaf~~lektg-~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g  146 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTG-YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG  146 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence            445566777777777666554 111 01111122334456666666666666665443222211 1111  122344556


Q ss_pred             ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc
Q 015329          130 MIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK  179 (409)
Q Consensus       130 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  179 (409)
                      .++....-.+-+...+-+.....-..|.-+-.+.|++..+..+|..+...
T Consensus       147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            66666555555544332223333344555555566666666666555443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.90  E-value=0.24  Score=44.66  Aligned_cols=65  Identities=12%  Similarity=-0.031  Sum_probs=44.5

Q ss_pred             CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          254 PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE----VTYNLVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       254 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      .+...++.+..+|.+.|++++|+..|++..+.  .|+.    .+|..+..+|...|+.++|.+.+++..+.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35566777777777777777777777777665  3332    34667777777777777777777777664

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.74  E-value=1.9  Score=43.64  Aligned_cols=101  Identities=9%  Similarity=0.025  Sum_probs=51.7

Q ss_pred             HHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 015329          232 YKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAK  311 (409)
Q Consensus       232 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~  311 (409)
                      ...+.+++|--.|+..-+.         .-.+.+|..+|+|.+|..+-.++....-+ -..+-..|+.-+...++.-+|-
T Consensus       950 ~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa 1019 (1265)
T KOG1920|consen  950 REELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAA 1019 (1265)
T ss_pred             HHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHH
Confidence            3445555555555443321         23455666677777776666655321100 0111245556666667766666


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 015329          312 KVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCK  350 (409)
Q Consensus       312 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  350 (409)
                      ++..+....        ....+..|++...+++|..+..
T Consensus      1020 ~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1020 KILLEYLSD--------PEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred             HHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHH
Confidence            666665543        2233444455555666655543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.71  E-value=0.26  Score=44.42  Aligned_cols=63  Identities=8%  Similarity=-0.014  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChhhHHHHHHHHHhc
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV----ITYTTLISAFYKDNRPEIGNGLWNLMVCK  250 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  250 (409)
                      ...++.+..+|.+.|++++|+..|++.++..  |+.    .+|..+..+|...|+.++|+..+++..+.
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4455555556666666666666666555542  221    23555555556666666666555555543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.60  E-value=0.55  Score=35.17  Aligned_cols=113  Identities=12%  Similarity=0.009  Sum_probs=62.9

Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329          265 HLVNKRRSWQANKLMGLMQRFGI--EPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF  342 (409)
Q Consensus       265 ~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  342 (409)
                      ...+.|++++|.+.|+.+...-.  +-....--.|+.+|.+.|++++|...+++.++....--..-|...+.+++.....
T Consensus        19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~   98 (142)
T PF13512_consen   19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD   98 (142)
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence            34566778888888877766521  1134455567777778888888888888777764332223355555555433322


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          343 NLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       343 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      +..   +..+.  +..-|.             +....|..-|+.+.+..|+..
T Consensus        99 ~~~---~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   99 EGS---LQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             hhH---Hhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCCh
Confidence            211   11111  111121             224477777777777776653

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.58  E-value=0.38  Score=44.76  Aligned_cols=164  Identities=10%  Similarity=-0.060  Sum_probs=95.2

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCCh------hHHHHHHHHHHh----cCChHHHHHHHHHhhhcCCCCCHHh
Q 015329           83 FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRRE------GFIMRIMMLYGK----AGMIKHAMDTFYDMHLYGCKRTVKS  152 (409)
Q Consensus        83 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~  152 (409)
                      +..+++..+=.|+-+.+++++....+.+.-..+      -.|..++..+..    ....+.|.+++..+.+.  -|+...
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l  268 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL  268 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence            455666666677777777777665543221111      113333333332    45677777777777765  466665


Q ss_pred             HHH-HHHHHHccCCHHHHHHHHHhcCccCC-C-CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329          153 LNA-ALKVLTESRDLKAIQAFLMEVPEKFH-I-QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLIS  229 (409)
Q Consensus       153 ~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~  229 (409)
                      |.. -.+.+...|+++.|...++....... . +.....+--+.-.+.-.++|++|.+.|..+.+..- -+..+|.-+.-
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a  347 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence            543 33455666777888777764332111 1 12234455566677778889999999998887532 24444444433


Q ss_pred             H-HHHcCCh-------hhHHHHHHHHHh
Q 015329          230 A-FYKDNRP-------EIGNGLWNLMVC  249 (409)
Q Consensus       230 ~-~~~~~~~-------~~a~~~~~~m~~  249 (409)
                      + +...++.       ++|.++|.+...
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            3 3345666       788888877643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.58  E-value=0.71  Score=34.89  Aligned_cols=126  Identities=14%  Similarity=0.067  Sum_probs=66.5

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 015329          225 TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS  304 (409)
Q Consensus       225 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  304 (409)
                      ..++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+..+.++.      ..+......++..|.+.
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~   82 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA   82 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence            345555555566666666666666655 355566666666666543 3333333332      11223334456666666


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015329          305 GHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE-GDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKK  373 (409)
Q Consensus       305 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~  373 (409)
                      +-++++..++.++..         +...+..+... ++++.|.+++.+-   +   +...|..++..+..
T Consensus        83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~---~---~~~lw~~~~~~~l~  137 (140)
T smart00299       83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ---N---NPELWAEVLKALLD  137 (140)
T ss_pred             CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC---C---CHHHHHHHHHHHHc
Confidence            666666666655431         22233333333 6666666665541   1   34466666655543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.45  E-value=1.5  Score=37.90  Aligned_cols=132  Identities=9%  Similarity=0.074  Sum_probs=80.1

Q ss_pred             hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cC----ChhhHHHHHHHHHhcCC---CCCHhhHHHHHHHHHhcCCH
Q 015329          202 LDKAYLVMVEMQKLGVKPDVITYTTLISAFYK--DN----RPEIGNGLWNLMVCKGC---FPNLATFNVRIQHLVNKRRS  272 (409)
Q Consensus       202 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~  272 (409)
                      ++..+.+++.|.+.|+.-+..+|-+.......  ..    ....+..+|+.|++...   .++...+..++..  ..++.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            45667788888888888777776654333332  22    24568888999988641   2344555555443  33333


Q ss_pred             ----hHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329          273 ----WQANKLMGLMQRFGIEPDE--VTYNLVIKGFCRSGH--LDMAKKVYSAMLGRRLMPNRKIYQTMIHY  335 (409)
Q Consensus       273 ----~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~  335 (409)
                          +.+..+|+.+.+.|+..+.  .....++..+.....  ...+.++++.+.+.|+++....|..+.-.
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL  226 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL  226 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence                4567778888887776542  233333332222211  45778888889988888877776655433

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.43  E-value=0.42  Score=34.92  Aligned_cols=52  Identities=19%  Similarity=0.196  Sum_probs=23.4

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329          302 CRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       302 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  354 (409)
                      +..|+.+.|++.|...+..-. -....||.=.+++.-.|+.++|+.=+++.++
T Consensus        54 aE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   54 AEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            344445555555444443311 1334444444444444555544444444443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.35  E-value=2  Score=38.64  Aligned_cols=146  Identities=16%  Similarity=0.221  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhH-HHHH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLG-VKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATF-NVRI  263 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll  263 (409)
                      ...|...|+.-.+..-++.|..+|-++.+.| +.+++..++++|.-++ .|+..-|..+|+.-...  -||...| +-.+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            4568888888888888999999999999988 6678888899988665 58899999999876654  3444443 5567


Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329          264 QHLVNKRRSWQANKLMGLMQRFGIEPD--EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLC  337 (409)
Q Consensus       264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  337 (409)
                      ..+...++-+.|..+|+.....= ..+  ...|..+|..-..-|+...+..+=+.|.+.  .|...+...+..-|.
T Consensus       474 ~fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~  546 (660)
T COG5107         474 LFLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA  546 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence            77788899999999999543220 112  467889999889999999888888888765  455545444544444

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.34  E-value=2.6  Score=39.81  Aligned_cols=118  Identities=16%  Similarity=0.109  Sum_probs=72.7

Q ss_pred             HHHHHHhcCChhHHHHHHH------HHHhCCCCC---CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329          192 VIKAFCEMGILDKAYLVMV------EMQKLGVKP---DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVR  262 (409)
Q Consensus       192 ll~~~~~~g~~~~a~~~~~------~m~~~g~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  262 (409)
                      ....+...|+.++|..+.-      -+.+.+-+.   +..+...+..-+.+...+..|-++|..|-..         ..+
T Consensus       709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksi  779 (1081)
T KOG1538|consen  709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSL  779 (1081)
T ss_pred             HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHH
Confidence            3445566777777765422      222222222   3334444444445566777888888877542         356


Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcCCCcCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          263 IQHLVNKRRSWQANKLMGLMQRFGIEPDEV-----------TYNLVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       263 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-----------~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      ++.....+++++|..+-+..-+.  .||++           -|.-.-.+|.+.|+-.+|.++++.+...
T Consensus       780 VqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  780 VQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             hhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence            67778889999998887765433  23322           2344556788889999999998887654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.32  E-value=0.93  Score=39.01  Aligned_cols=154  Identities=10%  Similarity=-0.011  Sum_probs=85.3

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCH--hhH--HHHHHHHHhcCCH
Q 015329          197 CEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNL--ATF--NVRIQHLVNKRRS  272 (409)
Q Consensus       197 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~--~~ll~~~~~~~~~  272 (409)
                      ...|++.+|-..++++.+.-+ .|...+.-.=.+|...|+.+.-...++++.-.- .+|.  .+|  ....-++...|-+
T Consensus       114 ~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence            345666676666777766532 366666666667777777777666666665431 1222  222  2223344456777


Q ss_pred             hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 015329          273 WQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR---RLMPNRKIYQTMIHYLCQEGDFNLAYIMC  349 (409)
Q Consensus       273 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~  349 (409)
                      ++|++.-++..+.+ +.|.-...+....+--.|+..++.++..+-...   +-..-..-|-...-.+...+.++.|+++|
T Consensus       192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            77777777666554 225555556666666667777777666554332   11111122223333344556777777777


Q ss_pred             HHHH
Q 015329          350 KDSM  353 (409)
Q Consensus       350 ~~m~  353 (409)
                      +.-+
T Consensus       271 D~ei  274 (491)
T KOG2610|consen  271 DREI  274 (491)
T ss_pred             HHHH
Confidence            6533

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.29  E-value=0.54  Score=35.24  Aligned_cols=80  Identities=14%  Similarity=0.061  Sum_probs=50.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329          299 KGFCRSGHLDMAKKVYSAMLGRR--LMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ  376 (409)
Q Consensus       299 ~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~  376 (409)
                      ....+.|++++|.+.|+.+...-  -.-....--.++.+|.+.|++++|...+++.++..-.....-|...+.+++.-..
T Consensus        18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~   97 (142)
T PF13512_consen   18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ   97 (142)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence            33456788888888888887761  1113345566788888888888888888888776411112345555555554433


Q ss_pred             hH
Q 015329          377 PC  378 (409)
Q Consensus       377 ~~  378 (409)
                      .+
T Consensus        98 ~~   99 (142)
T PF13512_consen   98 DE   99 (142)
T ss_pred             hh
Confidence            33

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.25  E-value=2.2  Score=38.48  Aligned_cols=75  Identities=19%  Similarity=0.185  Sum_probs=47.0

Q ss_pred             hCCCCCCHHH-HHHHHHHHHHcCCHhHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          319 GRRLMPNRKI-YQTMIHYLCQEGDFNLAYIMCKDSMKKNWV----PSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       319 ~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      ..-+.|+... ...++..+..  +.+++..+.+.+....+.    --..++..++...++.++...|.+.+..++-..|.
T Consensus       253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~  330 (549)
T PF07079_consen  253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR  330 (549)
T ss_pred             hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence            3345565433 3344444443  455555555444332211    23457888999999999999999999988888776


Q ss_pred             CC
Q 015329          394 FS  395 (409)
Q Consensus       394 ~~  395 (409)
                      .+
T Consensus       331 ~s  332 (549)
T PF07079_consen  331 IS  332 (549)
T ss_pred             ch
Confidence            65

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=0.42  Score=42.14  Aligned_cols=128  Identities=16%  Similarity=0.082  Sum_probs=84.6

Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHc-----CCCc---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 015329          262 RIQHLVNKRRSWQANKLMGLMQRF-----GIEP---------DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRK  327 (409)
Q Consensus       262 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  327 (409)
                      --..|.+.|++..|..-|++....     +..+         -..++..+..+|.+.+++.+|++.-...+..+. +|..
T Consensus       214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~K  292 (397)
T KOG0543|consen  214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVK  292 (397)
T ss_pred             hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-Cchh
Confidence            347888999999999998886542     2221         123456677778888888888888888777643 3666


Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhCCC-hHHHHHHHHHHHhcCC
Q 015329          328 IYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTI-SALLEGLKKNNQ-PCKANTIMALVQRRVP  392 (409)
Q Consensus       328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~g~-~~~a~~~~~~~~~~~~  392 (409)
                      ..-.=..+|...|+++.|...|+.+++.  .|+-... .-|+..-.+... .+...++|..|...-.
T Consensus       293 ALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  293 ALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            6666777888888888888888888775  3444444 334433333333 3344677777765543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.17  E-value=0.86  Score=33.36  Aligned_cols=93  Identities=15%  Similarity=-0.012  Sum_probs=64.6

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHH---HHHHHHhcC
Q 015329          194 KAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNV---RIQHLVNKR  270 (409)
Q Consensus       194 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---ll~~~~~~~  270 (409)
                      -+....|+++.|++.|.+....-.+ ....||.-..++.-.|+.++|+.=+++..+..-..+...+.+   -...|...|
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            3567788888888888888775433 677888888888888888888888877766432223333322   333566678


Q ss_pred             CHhHHHHHHHHHHHcCC
Q 015329          271 RSWQANKLMGLMQRFGI  287 (409)
Q Consensus       271 ~~~~a~~~~~~~~~~~~  287 (409)
                      +-+.|..=|+..-+.|.
T Consensus       130 ~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLGS  146 (175)
T ss_pred             chHHHHHhHHHHHHhCC
Confidence            88888888877766663

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.12  E-value=1.5  Score=35.88  Aligned_cols=202  Identities=11%  Similarity=-0.019  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH-H
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQKL-GVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ-H  265 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~  265 (409)
                      .+......+...+++..+...+...... ........+......+...+++..+...+.........+ ......... .
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  139 (291)
T COG0457          61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence            3344444444444444444444444321 111233333334444444444444554444444432111 111111111 4


Q ss_pred             HHhcCCHhHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHh
Q 015329          266 LVNKRRSWQANKLMGLMQRFGI--EPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFN  343 (409)
Q Consensus       266 ~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  343 (409)
                      +...|+++.+...+........  ......+......+...++.+.+...+..............+..+...+...++++
T Consensus       140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (291)
T COG0457         140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE  219 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence            4555555555555555533211  01222222223334455555666655555554411112344555555555555566


Q ss_pred             HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329          344 LAYIMCKDSMKKNWVPS-VDTISALLEGLKKNNQPCKANTIMALVQRRVP  392 (409)
Q Consensus       344 ~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  392 (409)
                      .+...+.......  |+ ...+..+...+...+..+.+...+....+..+
T Consensus       220 ~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         220 EALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             HHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            6666555554432  22 23333333333344556666655555555444

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.94  E-value=0.45  Score=39.69  Aligned_cols=92  Identities=12%  Similarity=0.027  Sum_probs=59.1

Q ss_pred             hhhhcCChHHHHHHHHHhhcCCC-CCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC--hhHHHHHHHHHHhcC
Q 015329           53 KLKAERDPEKLFQLFKANAHNRI-VIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR--EGFIMRIMMLYGKAG  129 (409)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~  129 (409)
                      .+...|++..|.+.|....+..+ -.-...++--|..++...|++++|..+|..+.+..+...  ++.+.-|..+..+.|
T Consensus       150 ~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~  229 (262)
T COG1729         150 DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG  229 (262)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence            34455567888888877766641 111223455677777788888888888777765433221  455555777777778


Q ss_pred             ChHHHHHHHHHhhhc
Q 015329          130 MIKHAMDTFYDMHLY  144 (409)
Q Consensus       130 ~~~~a~~~~~~m~~~  144 (409)
                      +.++|..+|+++.+.
T Consensus       230 ~~d~A~atl~qv~k~  244 (262)
T COG1729         230 NTDEACATLQQVIKR  244 (262)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            888888888777654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.80  E-value=1.2  Score=43.27  Aligned_cols=247  Identities=13%  Similarity=0.051  Sum_probs=118.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHH----HHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHH
Q 015329          119 MRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLN----AALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIK  194 (409)
Q Consensus       119 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~  194 (409)
                      ..-+....+...++-|+.+-+.-.     .+..+..    ...+-+.+.|++++|...|-+-...  +.|.     .++.
T Consensus       338 e~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~  405 (933)
T KOG2114|consen  338 ETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIK  405 (933)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHH
Confidence            344555566666666666544432     2222222    2333344567776666555332211  2221     2445


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhH
Q 015329          195 AFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQ  274 (409)
Q Consensus       195 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~  274 (409)
                      -|....++..-..+++.+.+.|+. +...-+.|+++|.+.++.++-.+..+... .|..  ..-....+..+.+.+-.++
T Consensus       406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~  481 (933)
T KOG2114|consen  406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE  481 (933)
T ss_pred             HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence            555555666666666777776665 55555667777777777776665555443 2211  1113345555555665565


Q ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329          275 ANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       275 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  354 (409)
                      |..+-.+...     +......++   -..|++++|++++..+.-....++...|...+   . ....++-..++-+...
T Consensus       482 a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp~~e~l~~l~kyGk~L---l-~h~P~~t~~ili~~~t  549 (933)
T KOG2114|consen  482 AELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLPISELLRTLNKYGKIL---L-EHDPEETMKILIELIT  549 (933)
T ss_pred             HHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHH---H-hhChHHHHHHHHHHHh
Confidence            5554444321     223333333   34567777777776543221112222222211   1 2334444444444433


Q ss_pred             CCCCCCHHHHHH-----HHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          355 KNWVPSVDTISA-----LLEGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       355 ~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      ...++.......     +-....-.++++....+++.|.+..++
T Consensus       550 ~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~  593 (933)
T KOG2114|consen  550 ELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPD  593 (933)
T ss_pred             hcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCC
Confidence            322222222221     112234455666666666666555443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.71  E-value=0.076  Score=30.75  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          363 TISALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      ++..+...|...|++++|+++++++.+..|++.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~   35 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDP   35 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            455556666666666666666666666665543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.68  E-value=1.7  Score=42.18  Aligned_cols=177  Identities=11%  Similarity=0.128  Sum_probs=95.8

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHH----HHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHH
Q 015329           82 AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIM----RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAAL  157 (409)
Q Consensus        82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  157 (409)
                      ....-+..+.+..-++.|..+-+.-.     .+..+..    .....+.+.|++++|...|-+-... +.|.     .++
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi  404 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI  404 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence            34555666666666666766654432     1233333    3334455677888887777665432 1222     245


Q ss_pred             HHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 015329          158 KVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRP  237 (409)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~  237 (409)
                      .-|.........-.+++.+.++ |+. +...-..|+.+|.+.++.++-.++.+.-. .|..  ..-....+..+.+.+-.
T Consensus       405 ~kfLdaq~IknLt~YLe~L~~~-gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl  479 (933)
T KOG2114|consen  405 KKFLDAQRIKNLTSYLEALHKK-GLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL  479 (933)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHc-ccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence            5555555666666666555433 433 34445667778888887777666655543 2211  11134455556666666


Q ss_pred             hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 015329          238 EIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLM  282 (409)
Q Consensus       238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  282 (409)
                      ++|..+-.....     +......++   -..+++++|+++++.+
T Consensus       480 ~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  480 DEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence            666554443322     233333333   3467777777777765

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.63  E-value=3  Score=36.91  Aligned_cols=309  Identities=16%  Similarity=0.143  Sum_probs=193.0

Q ss_pred             CChHHHHHHHHHhhcCCCCCCccchHHHHHHHH--hcCCCchhHHHHHHHhhhCCCCCChhHHHHHH--HHHHhcCChHH
Q 015329           58 RDPEKLFQLFKANAHNRIVIENKYAFEDTVSRL--AGARRFDYIEHLLEHQKSLPQGRREGFIMRIM--MLYGKAGMIKH  133 (409)
Q Consensus        58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~  133 (409)
                      ..|..+...|..-++..       .|..|-..+  ...|+-..|.++-.+..+.-. .+..-+..|+  ++-.-.|+++.
T Consensus        67 ~sP~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~lls-sDqepLIhlLeAQaal~eG~~~~  138 (531)
T COG3898          67 ESPYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKLLS-SDQEPLIHLLEAQAALLEGDYED  138 (531)
T ss_pred             hCcHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhhhh-ccchHHHHHHHHHHHHhcCchHH
Confidence            45666666666655443       244444333  356788888888776653322 2333333344  34556899999


Q ss_pred             HHHHHHHhhhcCCCCCHHh--HHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 015329          134 AMDTFYDMHLYGCKRTVKS--LNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMGILDKAYLVMV  210 (409)
Q Consensus       134 a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~  210 (409)
                      |.+-|+.|..   .|....  ..-|.-..-+.|+.+.+.++-++...+   .|. ...+...+...|..|+|+.|+++++
T Consensus       139 Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~---Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd  212 (531)
T COG3898         139 ARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK---APQLPWAARATLEARCAAGDWDGALKLVD  212 (531)
T ss_pred             HHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh---ccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence            9999999985   233222  233444445678889998887654333   333 5678899999999999999999999


Q ss_pred             HHHhCC-CCCCHHH--HHHHHHHHHH---cCChhhHHHHHHHHHhcCCCCCHhhH-HHHHHHHHhcCCHhHHHHHHHHHH
Q 015329          211 EMQKLG-VKPDVIT--YTTLISAFYK---DNRPEIGNGLWNLMVCKGCFPNLATF-NVRIQHLVNKRRSWQANKLMGLMQ  283 (409)
Q Consensus       211 ~m~~~g-~~~~~~~--~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~  283 (409)
                      .-.... +.++..-  -..|+.+-..   ..+...|...-.+..+  +.||..-- ..-..++.+.|+..++-.+++.+-
T Consensus       213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW  290 (531)
T COG3898         213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW  290 (531)
T ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence            876533 3334322  2233332211   2344455544444433  45554322 234568889999999999999999


Q ss_pred             HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH
Q 015329          284 RFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-RLMP-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSV  361 (409)
Q Consensus       284 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~  361 (409)
                      +....|+  .+  .+..+.+.|+.  +..-+++..+. .++| +......+..+-...|++..|..--+...+.  .|..
T Consensus       291 K~ePHP~--ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pre  362 (531)
T COG3898         291 KAEPHPD--IA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRE  362 (531)
T ss_pred             hcCCChH--HH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cchh
Confidence            8855554  32  23334455553  33333333322 2333 5566777888888899998887766654443  6888


Q ss_pred             HHHHHHHHHHHh-CCChHHHHHHHHHHHhc
Q 015329          362 DTISALLEGLKK-NNQPCKANTIMALVQRR  390 (409)
Q Consensus       362 ~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~  390 (409)
                      ..|..|.+.-.- .|+-.++...+.+..+.
T Consensus       363 s~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         363 SAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            888888766554 49999999998887654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.61  E-value=0.17  Score=29.28  Aligned_cols=28  Identities=11%  Similarity=0.055  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 015329          117 FIMRIMMLYGKAGMIKHAMDTFYDMHLY  144 (409)
Q Consensus       117 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~  144 (409)
                      .+..+...|.+.|++++|.++|++..+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4455666677777777777777776665

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=94.56  E-value=2.6  Score=35.81  Aligned_cols=64  Identities=6%  Similarity=-0.019  Sum_probs=34.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 015329          217 VKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK-GCFPNLATFNVRIQHLVNKRRSWQANKLMG  280 (409)
Q Consensus       217 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  280 (409)
                      ..++..+...+++.++..+++.+-.++|+..... +..-|...|..+|..-.+.||..-..++..
T Consensus       198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~  262 (292)
T PF13929_consen  198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID  262 (292)
T ss_pred             cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence            3445555555555555556665555555555443 334455555566666666665554444444

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.54  E-value=1.3  Score=39.30  Aligned_cols=127  Identities=11%  Similarity=0.078  Sum_probs=92.7

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHHhc-----CCC---------CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH
Q 015329          226 TLISAFYKDNRPEIGNGLWNLMVCK-----GCF---------PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE  291 (409)
Q Consensus       226 ~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~  291 (409)
                      .-.+.+.+.|++..|..-|+.....     +..         .-..++..+..+|.+.+++..|+..-...+..+ +.|.
T Consensus       213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~  291 (397)
T KOG0543|consen  213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV  291 (397)
T ss_pred             HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence            3457889999999999999886532     111         234667788889999999999999999998876 3477


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCH-hHHHHHHHHHHhC
Q 015329          292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQ-TMIHYLCQEGDF-NLAYIMCKDSMKK  355 (409)
Q Consensus       292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~-~~a~~~~~~m~~~  355 (409)
                      ...--=-.+|...|+++.|+..|+.+++.  .|+..... .++.+--+.... +...++|..|...
T Consensus       292 KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  292 KALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             hHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            76666778999999999999999999987  55555444 444443343333 3446677777654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.40  E-value=2.4  Score=34.89  Aligned_cols=91  Identities=12%  Similarity=0.099  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHhCC---CCCCHHHHH
Q 015329          294 YNLVIKGFCRSGHLDMAKKVYSAMLGR----RLMPNR-KIYQTMIHYLCQEGDFNLAYIMCKDSMKKN---WVPSVDTIS  365 (409)
Q Consensus       294 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~  365 (409)
                      +..+-..+.+...+++|-..+.+-...    .-.++. ..|...|-.+....++..|.+.+++-.+.+   -+-+..+..
T Consensus       153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le  232 (308)
T KOG1585|consen  153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE  232 (308)
T ss_pred             HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence            344445555566666655444332111    111222 234555555666778888888887643321   234566788


Q ss_pred             HHHHHHHhCCChHHHHHHHH
Q 015329          366 ALLEGLKKNNQPCKANTIMA  385 (409)
Q Consensus       366 ~l~~~~~~~g~~~~a~~~~~  385 (409)
                      .|+.+| ..|+.+++.+++.
T Consensus       233 nLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  233 NLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHHHHh-ccCCHHHHHHHHc
Confidence            888877 5677787777654

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.39  E-value=0.72  Score=39.13  Aligned_cols=61  Identities=13%  Similarity=0.184  Sum_probs=30.6

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAML  318 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  318 (409)
                      .++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            344444555555555555555555554443 1244555555555555555555555555443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.26  E-value=0.7  Score=39.19  Aligned_cols=79  Identities=10%  Similarity=0.059  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh-----CCCCCCHHHHH
Q 015329          291 EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK-----KNWVPSVDTIS  365 (409)
Q Consensus       291 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~  365 (409)
                      ..++..++..+...|+.+.+...++++...... +...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            456778888899999999999999999887544 788899999999999999999999888765     47888888777


Q ss_pred             HHHHH
Q 015329          366 ALLEG  370 (409)
Q Consensus       366 ~l~~~  370 (409)
                      .+...
T Consensus       232 ~y~~~  236 (280)
T COG3629         232 LYEEI  236 (280)
T ss_pred             HHHHH
Confidence            76665

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.23  E-value=7.3  Score=39.74  Aligned_cols=116  Identities=13%  Similarity=0.077  Sum_probs=66.5

Q ss_pred             CCCHhhHHHHHH----HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 015329          253 FPNLATFNVRIQ----HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKI  328 (409)
Q Consensus       253 ~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  328 (409)
                      .|+...+..+..    .+.....+++|--.|+..-+         ..-.+.+|..+|++.+|..+...+....-. -..+
T Consensus       932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~ 1001 (1265)
T KOG1920|consen  932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVIL 1001 (1265)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHH
Confidence            355555444444    44456667777666655432         124567777888888888887766533111 1112


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 015329          329 YQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMAL  386 (409)
Q Consensus       329 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  386 (409)
                      -..|+.-+...++.-+|-++..+....   |.     -.+..|++...+++|.++...
T Consensus      1002 a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred             HHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHh
Confidence            256777788888888888888776542   11     112334444455555555443

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=94.15  E-value=1.3  Score=30.80  Aligned_cols=48  Identities=17%  Similarity=0.124  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329          344 LAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV  391 (409)
Q Consensus       344 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  391 (409)
                      +..+-++.+...++.|++.+..+.+.+|.+.+++..|.++|+-++.+.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~   75 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC   75 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence            344444555555555666666666666666666666666666555443

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.15  E-value=6.4  Score=38.80  Aligned_cols=226  Identities=12%  Similarity=0.003  Sum_probs=121.4

Q ss_pred             HHHHhcCChHHHHHHHHHhhhcCCCCCH-------HhHHHHHHH-HHccCCHHHHHHHHHhcCcc---CCCCcCHHHHHH
Q 015329          123 MLYGKAGMIKHAMDTFYDMHLYGCKRTV-------KSLNAALKV-LTESRDLKAIQAFLMEVPEK---FHIQFDIFSFNI  191 (409)
Q Consensus       123 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~  191 (409)
                      .......++.+|..++.++...-..|+.       ..|+.+-.. ....|+++.+.++.+.....   ....+....+.+
T Consensus       423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv  502 (894)
T COG2909         423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV  502 (894)
T ss_pred             HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence            3455688999999999887554222222       123333222 23457777777766543322   223445667888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHHcCCh--hhHHHHHHHHHhcC---C---CCCHhh
Q 015329          192 VIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLI-----SAFYKDNRP--EIGNGLWNLMVCKG---C---FPNLAT  258 (409)
Q Consensus       192 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll-----~~~~~~~~~--~~a~~~~~~m~~~~---~---~~~~~~  258 (409)
                      +..+..-.|++++|..+.....+..-.-+...+..+.     ..+...|+.  .+.+..|.......   .   .+-..+
T Consensus       503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~  582 (894)
T COG2909         503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI  582 (894)
T ss_pred             hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence            8888888999999998877766543233444443332     224445632  33333344333221   0   112234


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHH----HHcCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHH
Q 015329          259 FNVRIQHLVNKRRSWQANKLMGLM----QRFGIEPDEVT--YNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP----NRKI  328 (409)
Q Consensus       259 ~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~  328 (409)
                      +..++.++.+   .+.+..-...-    ......|-...  +..|+..+...|+.++|...++++......+    +..+
T Consensus       583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a  659 (894)
T COG2909         583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA  659 (894)
T ss_pred             HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence            4445555544   33333222222    22222222222  2367778888999999999998887653322    2222


Q ss_pred             HHHHHHHH--HHcCCHhHHHHHHHH
Q 015329          329 YQTMIHYL--CQEGDFNLAYIMCKD  351 (409)
Q Consensus       329 ~~~li~~~--~~~g~~~~a~~~~~~  351 (409)
                      -...+...  ...|+..++.....+
T Consensus       660 ~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         660 AAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHhhHHHhcccCCHHHHHHHHHh
Confidence            22233322  346777777766554

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=94.12  E-value=0.77  Score=38.44  Aligned_cols=125  Identities=10%  Similarity=0.058  Sum_probs=71.1

Q ss_pred             HHHHhhhhcCChHHHHHHHHHhhcCC----CCCCccch--------HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChh
Q 015329           49 PALVKLKAERDPEKLFQLFKANAHNR----IVIENKYA--------FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREG  116 (409)
Q Consensus        49 ~~l~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~--------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  116 (409)
                      ..-..+.-..|+..|++..++..+.-    ....+..+        ...=|.+++..+++.++..+.-+--+.+.+..+.
T Consensus        40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpk  119 (309)
T PF07163_consen   40 EAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK  119 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH
Confidence            33344555689999999988775431    00111111        1122677777777777777665555555555566


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHH-----ccCCHHHHHHHH
Q 015329          117 FIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLT-----ESRDLKAIQAFL  173 (409)
Q Consensus       117 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-----~~~~~~~a~~~~  173 (409)
                      +..-=|-.|.+.+++..+.++-.......-..+..-|..++..|.     -.|.+++|+.+.
T Consensus       120 IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  120 ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence            666556667777777777777666654322223333555444443     346666666655

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.04  E-value=3.6  Score=35.45  Aligned_cols=164  Identities=12%  Similarity=0.045  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHcCChh---hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 015329          222 ITYTTLISAFYKDNRPE---IGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVI  298 (409)
Q Consensus       222 ~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li  298 (409)
                      .+...++.+|...+..+   +|..+++.+.... .-.+..+..-+..+.+.++.+.+.+.+.+|...-.. ....+..++
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l  162 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence            45667778888777665   4566666665442 223556666777777789999999999999876321 334455555


Q ss_pred             HHH---HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHH-HHHH---HHHcCC------HhHHHHHHHHHHhC-CCCCCHHH
Q 015329          299 KGF---CRSGHLDMAKKVYSAMLGRRLMPNRK-IYQT-MIHY---LCQEGD------FNLAYIMCKDSMKK-NWVPSVDT  363 (409)
Q Consensus       299 ~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~-li~~---~~~~g~------~~~a~~~~~~m~~~-~~~~~~~~  363 (409)
                      ..+   .. .....|...++.+....+.|... .... ++.-   ..+.++      ++...+++....+. +.+.+..+
T Consensus       163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~  241 (278)
T PF08631_consen  163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA  241 (278)
T ss_pred             HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            544   33 33456777777776665555553 2211 1111   112222      33444444432221 23344443


Q ss_pred             HHHH-------HHHHHhCCChHHHHHHHHHHH
Q 015329          364 ISAL-------LEGLKKNNQPCKANTIMALVQ  388 (409)
Q Consensus       364 ~~~l-------~~~~~~~g~~~~a~~~~~~~~  388 (409)
                      -.++       ...+.+.++++.|.+.++...
T Consensus       242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            3222       244667899999999998654

It is also involved in sporulation [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.84  E-value=4.6  Score=36.05  Aligned_cols=65  Identities=9%  Similarity=-0.071  Sum_probs=35.0

Q ss_pred             CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329          255 NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP---DEVTYNLVIKGFCRSGHLDMAKKVYSAMLG  319 (409)
Q Consensus       255 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  319 (409)
                      ...+|..+...+.+.|.++.|...+..+...+...   ++...-.-....-..|+..+|...++...+
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455666666666666666666666665533111   122222334444555666666666666555

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.82  E-value=4.9  Score=38.56  Aligned_cols=184  Identities=11%  Similarity=-0.006  Sum_probs=102.3

Q ss_pred             HHHHHHHHHhcCccCCCCcCHHHHHHHHHH-HHhcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHcC--
Q 015329          166 LKAIQAFLMEVPEKFHIQFDIFSFNIVIKA-FCEMGILDKAYLVMVEMQK-------LGVKPDVITYTTLISAFYKDN--  235 (409)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~ll~~~~~~~--  235 (409)
                      ...+..+++...+...+.+-...=.....+ +....|.+.|+.+|+...+       .|   ......-+..+|.+..  
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence            356777775554432222111111122223 5566788999999988876       44   3334555666666643  


Q ss_pred             ---ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh-cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH--hcCCHHH
Q 015329          236 ---RPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN-KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFC--RSGHLDM  309 (409)
Q Consensus       236 ---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~  309 (409)
                         +.+.|..++....+.| .|+...+-..+.-... ..+...|.++|...-+.|.. ....+..++....  -..+.+.
T Consensus       305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~  382 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL  382 (552)
T ss_pred             ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence               5567888888888877 4455444333322222 24677899999998888753 2222222211111  2346788


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329          310 AKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN  356 (409)
Q Consensus       310 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  356 (409)
                      |..++.+..+.| .|-..--...+..+.. +.++.+.-.+..+.+.|
T Consensus       383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            888888888876 3322222223333333 66666666555555554

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.81  E-value=3.3  Score=34.18  Aligned_cols=195  Identities=12%  Similarity=-0.012  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH  265 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  265 (409)
                      ...|.--..+|....++++|...+.+..+. .+.+...|+       ..+.++.|.-+.++|.+..  --+..|+-....
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~l  100 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASEL  100 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHH
Confidence            344666677788888888888877766531 121222222       2344556666666665531  223456666777


Q ss_pred             HHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcC
Q 015329          266 LVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-----RLMPNRKIYQTMIHYLCQEG  340 (409)
Q Consensus       266 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g  340 (409)
                      |..+|.++.|-..+++.-+.                ...-++++|+++|.+....     ...--...+..+-..+++..
T Consensus       101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~  164 (308)
T KOG1585|consen  101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE  164 (308)
T ss_pred             HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence            88888887777666655321                1223444555555443221     11112233555566677777


Q ss_pred             CHhHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHH---HhcCCCCCchhHHHHHHhh
Q 015329          341 DFNLAYIMCKDSMKK----NWVPSV-DTISALLEGLKKNNQPCKANTIMALV---QRRVPHFSSNQLSAFKSIL  406 (409)
Q Consensus       341 ~~~~a~~~~~~m~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~  406 (409)
                      .+++|...+.+-...    .-.++. ..|...|-.+.-..++..|.+.++.-   -....+-+..+...|+.+|
T Consensus       165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay  238 (308)
T KOG1585|consen  165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY  238 (308)
T ss_pred             HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence            777776655432211    111222 33555555666777899999888873   3333333455677777766

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.69  E-value=0.0015  Score=49.87  Aligned_cols=82  Identities=16%  Similarity=0.123  Sum_probs=37.3

Q ss_pred             HHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 015329          228 ISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHL  307 (409)
Q Consensus       228 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  307 (409)
                      +..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++..       +..-...++..|.+.|.+
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~   86 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY   86 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence            3344444555555555555554443344555555555555555545555444411       112223344444555555


Q ss_pred             HHHHHHHHH
Q 015329          308 DMAKKVYSA  316 (409)
Q Consensus       308 ~~a~~~~~~  316 (409)
                      +++.-++.+
T Consensus        87 ~~a~~Ly~~   95 (143)
T PF00637_consen   87 EEAVYLYSK   95 (143)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            555544443

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=93.69  E-value=2.6  Score=32.75  Aligned_cols=134  Identities=8%  Similarity=0.065  Sum_probs=64.9

Q ss_pred             HHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 015329          136 DTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL  215 (409)
Q Consensus       136 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  215 (409)
                      +.++.+.+.+++|+...+..+++.+.+.|.+.....+++     .++-+|.......+-.+..  ....+.++=-+|.++
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence            344455566667777777777777777777666666652     2333343333333222211  222222222222221


Q ss_pred             CCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329          216 GVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQR  284 (409)
Q Consensus       216 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  284 (409)
                          =...+..+++.+...|++-+|.++.+.....    +......++.+..+.+|...-..+++-..+
T Consensus        88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                0012344555566666666666666554222    112223455555555555554455544443

>PRK09687 putative lyase; Provisional

Probab=93.65  E-value=4.2  Score=34.98  Aligned_cols=236  Identities=11%  Similarity=0.057  Sum_probs=144.3

Q ss_pred             CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCCCHH
Q 015329          147 KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGIL----DKAYLVMVEMQKLGVKPDVI  222 (409)
Q Consensus       147 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~----~~a~~~~~~m~~~g~~~~~~  222 (409)
                      .++..+....+.++...|..+....+. .+..    .+|...-...+.++.+.|+.    +++...+..+...  .++..
T Consensus        34 d~d~~vR~~A~~aL~~~~~~~~~~~l~-~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~  106 (280)
T PRK09687         34 DHNSLKRISSIRVLQLRGGQDVFRLAI-ELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC  106 (280)
T ss_pred             CCCHHHHHHHHHHHHhcCcchHHHHHH-HHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence            566666666777777777654444444 3322    22555555666777777763    4577777766433  35666


Q ss_pred             HHHHHHHHHHHcCCh-----hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHH
Q 015329          223 TYTTLISAFYKDNRP-----EIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLV  297 (409)
Q Consensus       223 ~~~~ll~~~~~~~~~-----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l  297 (409)
                      +-...+.+++..+..     ..+...+.....   .++..+-...+.++.+.++. .+...+-.+.+   .+|...-...
T Consensus       107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A  179 (280)
T PRK09687        107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWA  179 (280)
T ss_pred             HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHH
Confidence            666666666665432     223333333332   33556666777788777764 55566655554   3455555556


Q ss_pred             HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329          298 IKGFCRSG-HLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ  376 (409)
Q Consensus       298 i~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~  376 (409)
                      +.++.+.+ +...+...+..+...   +|..+-...+.++.+.|+ ..+...+-+.++.+   +  .....+.++...|.
T Consensus       180 ~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~  250 (280)
T PRK09687        180 AFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGD  250 (280)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCC
Confidence            66666543 244666666666643   477778888888888887 45666666666653   2  23467788888888


Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHhhcc
Q 015329          377 PCKANTIMALVQRRVPHFSSNQLSAFKSILSK  408 (409)
Q Consensus       377 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~k  408 (409)
                      . +|...+..+.+..+  +..+...-++++.+
T Consensus       251 ~-~a~p~L~~l~~~~~--d~~v~~~a~~a~~~  279 (280)
T PRK09687        251 K-TLLPVLDTLLYKFD--DNEIITKAIDKLKR  279 (280)
T ss_pred             H-hHHHHHHHHHhhCC--ChhHHHHHHHHHhc
Confidence            5 68888888887665  45555555665544

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.57  E-value=1.2  Score=38.06  Aligned_cols=47  Identities=17%  Similarity=0.185  Sum_probs=23.5

Q ss_pred             ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 015329          236 RPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLM  282 (409)
Q Consensus       236 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  282 (409)
                      ++++++.++..=++.|+-||-.+++.+|+.+.+.+++.+|..+.-.|
T Consensus       115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~  161 (418)
T KOG4570|consen  115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV  161 (418)
T ss_pred             ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence            34444444444445555555555555555555555555554444444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.53  E-value=1.6  Score=34.49  Aligned_cols=63  Identities=10%  Similarity=0.090  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329          187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD--VITYTTLISAFYKDNRPEIGNGLWNLMVC  249 (409)
Q Consensus       187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  249 (409)
                      ..+..+...|++.|+.+.|.+.|.++.+....+.  ...+-.+|......+++..+...+.+...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3466777788888888888888888776544332  23345566666667777777766665543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.52  E-value=1.3  Score=37.70  Aligned_cols=127  Identities=15%  Similarity=0.170  Sum_probs=74.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHh----------CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---CCCCHhh
Q 015329          192 VIKAFCEMGILDKAYLVMVEMQK----------LGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKG---CFPNLAT  258 (409)
Q Consensus       192 ll~~~~~~g~~~~a~~~~~~m~~----------~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~  258 (409)
                      |.++|.....|+.-....-.+-.          .|......+...++..-....+++.++..+-.++...   ..|+...
T Consensus        25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~  104 (418)
T KOG4570|consen   25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI  104 (418)
T ss_pred             hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH
Confidence            44555555555543333322222          2334445555555555555667777777776665432   1222222


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          259 FNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       259 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                       ..+++.+. .-++++++.++..=.+.|+-||.++++.+++.+.+.+++.+|..+...|...
T Consensus       105 -~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  105 -HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             -HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence             22333322 3356677777777778888888888888888888888888888777776654

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=93.45  E-value=0.65  Score=31.86  Aligned_cols=45  Identities=18%  Similarity=0.296  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 015329          309 MAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSM  353 (409)
Q Consensus       309 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  353 (409)
                      ++.+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-.+
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444444444555566666666666666666666666555433

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.38  E-value=4.9  Score=34.86  Aligned_cols=156  Identities=6%  Similarity=-0.106  Sum_probs=107.9

Q ss_pred             ccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-C--CCCCHHHHHHHHHHHHHcCChh
Q 015329          162 ESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL-G--VKPDVITYTTLISAFYKDNRPE  238 (409)
Q Consensus       162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g--~~~~~~~~~~ll~~~~~~~~~~  238 (409)
                      ..|++.+|-..++++.++  .+.|...++..=.+|.-+|+.+.....+++.... +  ++-..+.-..+.-++...|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence            445554444445466554  4567888888889999999999999999988754 2  2212333334445566789999


Q ss_pred             hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015329          239 IGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF---GIEPDEVTYNLVIKGFCRSGHLDMAKKVYS  315 (409)
Q Consensus       239 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  315 (409)
                      +|++.-++..+.+ +.|.-.-.+....+...|+..++.+++.+-...   +--.-.+-|-...-.+...+.++.|+++|+
T Consensus       193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            9999998888765 567777888888888999999999887765322   101112334444455667799999999998


Q ss_pred             HHHhC
Q 015329          316 AMLGR  320 (409)
Q Consensus       316 ~m~~~  320 (409)
                      .-+-.
T Consensus       272 ~ei~k  276 (491)
T KOG2610|consen  272 REIWK  276 (491)
T ss_pred             HHHHH
Confidence            74443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.35  E-value=0.23  Score=27.19  Aligned_cols=25  Identities=16%  Similarity=0.130  Sum_probs=15.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHH
Q 015329          189 FNIVIKAFCEMGILDKAYLVMVEMQ  213 (409)
Q Consensus       189 ~~~ll~~~~~~g~~~~a~~~~~~m~  213 (409)
                      |+.|...|.+.|++++|+++|++..
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5566666667777777776666643

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.33  E-value=3.7  Score=35.92  Aligned_cols=230  Identities=9%  Similarity=-0.059  Sum_probs=129.1

Q ss_pred             HHhcCCCchhHHHHHHHhhhCCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHH----hhhcC-CCCCHHhHHHHHHHHH
Q 015329           89 RLAGARRFDYIEHLLEHQKSLPQG-R-REGFIMRIMMLYGKAGMIKHAMDTFYD----MHLYG-CKRTVKSLNAALKVLT  161 (409)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~----m~~~~-~~~~~~~~~~ll~~~~  161 (409)
                      -+....+.++|+..|.+....-.. . ...++..+..+.++.|.+++++..--.    ..+.. -..-...|..+.+++-
T Consensus        15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e   94 (518)
T KOG1941|consen   15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE   94 (518)
T ss_pred             hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677778888887766532111 1 133455677778888888777653221    11110 0111234555555655


Q ss_pred             ccCCHHHHHHHHHhcCccCCCCcC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHH
Q 015329          162 ESRDLKAIQAFLMEVPEKFHIQFD---IFSFNIVIKAFCEMGILDKAYLVMVEMQKLG-----VKPDVITYTTLISAFYK  233 (409)
Q Consensus       162 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~~~ll~~~~~  233 (409)
                      +..++.+++.+-..-..-.|..|.   -...-++..++...+.++++++.|+...+..     .-....+|-.|.+.|.+
T Consensus        95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~  174 (518)
T KOG1941|consen   95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ  174 (518)
T ss_pred             HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence            555565555554333333333331   1234445667777778888888888776532     11234567788888888


Q ss_pred             cCChhhHHHHHHHHHh----cCCCCCHhhHHH-----HHHHHHhcCCHhHHHHHHHHHHH----cCCCc-CHHHHHHHHH
Q 015329          234 DNRPEIGNGLWNLMVC----KGCFPNLATFNV-----RIQHLVNKRRSWQANKLMGLMQR----FGIEP-DEVTYNLVIK  299 (409)
Q Consensus       234 ~~~~~~a~~~~~~m~~----~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~----~~~~p-~~~~~~~li~  299 (409)
                      ..|+++|.-+.....+    .++..-..-|..     +.-++...|+...|.+.-++..+    .|-.+ -......+.+
T Consensus       175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD  254 (518)
T KOG1941|consen  175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD  254 (518)
T ss_pred             HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            8888888776655433    222211122222     23355667777777776666533    34222 1233455666


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 015329          300 GFCRSGHLDMAKKVYSAML  318 (409)
Q Consensus       300 ~~~~~g~~~~a~~~~~~m~  318 (409)
                      .|...|+.+.|+.-|+...
T Consensus       255 IyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  255 IYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHhcccHhHHHHHHHHHH
Confidence            7778888888877777655

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.20  E-value=5.8  Score=35.21  Aligned_cols=286  Identities=12%  Similarity=0.064  Sum_probs=182.5

Q ss_pred             hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHH--HhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329           56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSR--LAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH  133 (409)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  133 (409)
                      ..||-..|.++-.+..+.  +..|......++.+  -.-.|+++.|.+-|+.|...+...-.. +..|.-..-+.|..+.
T Consensus        96 gAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllG-LRgLyleAqr~Garea  172 (531)
T COG3898          96 GAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLG-LRGLYLEAQRLGAREA  172 (531)
T ss_pred             ccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHh-HHHHHHHHHhcccHHH
Confidence            346777777666655422  34555555556544  345799999999999998653321111 2234444467889999


Q ss_pred             HHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHH--HHHHHHHHH---hcCChhHHHHH
Q 015329          134 AMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFS--FNIVIKAFC---EMGILDKAYLV  208 (409)
Q Consensus       134 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ll~~~~---~~g~~~~a~~~  208 (409)
                      |.+.-++.-... +.-...+...+...+..|+++.+.++++......-+.++..-  -..|+.+-.   -..+...|...
T Consensus       173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~  251 (531)
T COG3898         173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD  251 (531)
T ss_pred             HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            988888776542 233457889999999999999999999876555555555432  222332211   12345555555


Q ss_pred             HHHHHhCCCCCCHHHH-HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH-cC
Q 015329          209 MVEMQKLGVKPDVITY-TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQR-FG  286 (409)
Q Consensus       209 ~~~m~~~g~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~  286 (409)
                      -.+..+  +.||.+-- ..-..++.+.|+..++-.+++.+-+..  |.+..+  .+..+.+.|+.  +.+-++...+ ..
T Consensus       252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia--~lY~~ar~gdt--a~dRlkRa~~L~s  323 (531)
T COG3898         252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIA--LLYVRARSGDT--ALDRLKRAKKLES  323 (531)
T ss_pred             HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHH--HHHHHhcCCCc--HHHHHHHHHHHHh
Confidence            544444  34553322 233467889999999999999999874  444433  23334455553  4443443322 12


Q ss_pred             CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHhHHHHHHHHHHhC
Q 015329          287 IEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLC-QEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       287 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~  355 (409)
                      ++| +....-.+..+-...|++..|..--+....  ..|....|..|.+.-. ..|+-.++..++-+.++.
T Consensus       324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            244 455566677777888999888876666554  3788888988887764 459999999998887764

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.13  E-value=5.6  Score=34.89  Aligned_cols=230  Identities=9%  Similarity=-0.022  Sum_probs=142.3

Q ss_pred             hhhhcCChHHHHHHHHHhhcCC-CCCCccchHHHHHHHHhcCCCchhHHHHHH-Hh---hhCCC-CCChhHHHHHHHHHH
Q 015329           53 KLKAERDPEKLFQLFKANAHNR-IVIENKYAFEDTVSRLAGARRFDYIEHLLE-HQ---KSLPQ-GRREGFIMRIMMLYG  126 (409)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~~---~~~~~-~~~~~~~~~l~~~~~  126 (409)
                      .+...++.++|+..+.....+- .....-.+|..+..+.++.|++++++..-- +|   ..... ...-..|..+.+++-
T Consensus        15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e   94 (518)
T KOG1941|consen   15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE   94 (518)
T ss_pred             hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667788899998888776542 112223457777888899998887665422 12   11110 011233445666666


Q ss_pred             hcCChHHHHHHHHHhhhc-CCCC---CHHhHHHHHHHHHccCCHHHHHHHHHhcCccC----CCCcCHHHHHHHHHHHHh
Q 015329          127 KAGMIKHAMDTFYDMHLY-GCKR---TVKSLNAALKVLTESRDLKAIQAFLMEVPEKF----HIQFDIFSFNIVIKAFCE  198 (409)
Q Consensus       127 ~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~  198 (409)
                      +..++.+++.+-..-... |..|   .-....++..++...+.++.+...|+...+-.    +-......|..|-..|.+
T Consensus        95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~  174 (518)
T KOG1941|consen   95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ  174 (518)
T ss_pred             HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence            666677777666554332 2222   12334557777888888899988886543321    122235678899999999


Q ss_pred             cCChhHHHHHHHHHHh----CCCCCCHH-HHHHH-----HHHHHHcCChhhHHHHHHHHH----hcCCCC-CHhhHHHHH
Q 015329          199 MGILDKAYLVMVEMQK----LGVKPDVI-TYTTL-----ISAFYKDNRPEIGNGLWNLMV----CKGCFP-NLATFNVRI  263 (409)
Q Consensus       199 ~g~~~~a~~~~~~m~~----~g~~~~~~-~~~~l-----l~~~~~~~~~~~a~~~~~~m~----~~~~~~-~~~~~~~ll  263 (409)
                      ..|+++|.-+..+..+    .++. |.. -|..+     .-++...|..-+|.+.-++..    ..|-.+ .......+.
T Consensus       175 l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a  253 (518)
T KOG1941|consen  175 LKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA  253 (518)
T ss_pred             HHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            9999999887776654    3443 333 23332     235566788888877776654    344222 233445667


Q ss_pred             HHHHhcCCHhHHHHHHHHHH
Q 015329          264 QHLVNKRRSWQANKLMGLMQ  283 (409)
Q Consensus       264 ~~~~~~~~~~~a~~~~~~~~  283 (409)
                      +.|...|+.+.|+.-|+...
T Consensus       254 DIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  254 DIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHhcccHhHHHHHHHHHH
Confidence            78889999999988777653

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.08  E-value=0.36  Score=25.70  Aligned_cols=31  Identities=10%  Similarity=-0.105  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          363 TISALLEGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      .+..+...+...|++++|++.+++..+..|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            4555666677777777777777776666554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.89  E-value=3.6  Score=32.00  Aligned_cols=134  Identities=13%  Similarity=0.129  Sum_probs=68.5

Q ss_pred             HHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015329          242 GLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR  321 (409)
Q Consensus       242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  321 (409)
                      +.++.+.+.|++|+...+..++..+.+.|++..    +..+...++-+|....-..+-.+..  ....+.++=-+|.++ 
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR-   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR-   87 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence            444555566667777777777777777776543    3334444444554443333322221  223333333333332 


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329          322 LMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQR  389 (409)
Q Consensus       322 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  389 (409)
                         =...+..++..+...|++-+|.++.+.....    +......++++-.+.+|...-..+++-..+
T Consensus        88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               0112555666677777777777776653221    112224455666666665555555555444

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.54  E-value=11  Score=36.69  Aligned_cols=157  Identities=11%  Similarity=0.032  Sum_probs=91.4

Q ss_pred             HHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhc
Q 015329           49 PALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKA  128 (409)
Q Consensus        49 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  128 (409)
                      ..+.=+.+.+.+++|++.-+.....-.-..........|..+...|++++|-...-.|...    +..-|...+..+...
T Consensus       361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~  436 (846)
T KOG2066|consen  361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL  436 (846)
T ss_pred             hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence            4455677788899999888876544310013345777889999999999999888887644    445555555555555


Q ss_pred             CChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc--------CCC-------CcCHHHHHHHH
Q 015329          129 GMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK--------FHI-------QFDIFSFNIVI  193 (409)
Q Consensus       129 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~-------~~~~~~~~~ll  193 (409)
                      ++......   -+....-+.+...|..++..+.. .+......+..+....        ...       .-+...-..|+
T Consensus       437 ~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La  512 (846)
T KOG2066|consen  437 DQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA  512 (846)
T ss_pred             cccchhhc---cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence            55443322   22222222345567777776665 3333333322221110        000       11223344578


Q ss_pred             HHHHhcCChhHHHHHHHHHH
Q 015329          194 KAFCEMGILDKAYLVMVEMQ  213 (409)
Q Consensus       194 ~~~~~~g~~~~a~~~~~~m~  213 (409)
                      ..|...+++.+|++.+-.+.
T Consensus       513 ~LYl~d~~Y~~Al~~ylklk  532 (846)
T KOG2066|consen  513 HLYLYDNKYEKALPIYLKLQ  532 (846)
T ss_pred             HHHHHccChHHHHHHHHhcc
Confidence            88888899999988877665

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.36  E-value=0.37  Score=26.33  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=9.5

Q ss_pred             HHHHHHHHHcCCHhHHHHHHHH
Q 015329          330 QTMIHYLCQEGDFNLAYIMCKD  351 (409)
Q Consensus       330 ~~li~~~~~~g~~~~a~~~~~~  351 (409)
                      ..|...|.+.|++++|.+++++
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Confidence            3444444444444444444444

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=92.35  E-value=6.4  Score=33.53  Aligned_cols=136  Identities=13%  Similarity=0.145  Sum_probs=82.1

Q ss_pred             HhHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 015329          272 SWQANKLMGLMQR-FGIEPDEVTYNLVIKGFCR-SG-HLDMAKKVYSAMLGR-RLMPNRKIYQTMIHYLCQEGDFNLAYI  347 (409)
Q Consensus       272 ~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~  347 (409)
                      ..+|+.+|+...- ..+--|..+...+++.... .+ ....-.++.+-+... |-.++..+...++..++..+++.+-++
T Consensus       144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~  223 (292)
T PF13929_consen  144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ  223 (292)
T ss_pred             HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence            4455555553211 1233355566666665554 11 222223333333322 455677777778888888888888888


Q ss_pred             HHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHH-----HHhcCCCCCchhHHHHHHhhc
Q 015329          348 MCKDSMKK-NWVPSVDTISALLEGLKKNNQPCKANTIMAL-----VQRRVPHFSSNQLSAFKSILS  407 (409)
Q Consensus       348 ~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~  407 (409)
                      +|+.-... +..-|...|..++......|+..-..++.++     +++.+.+.++..-.+|-..+.
T Consensus       224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~  289 (292)
T PF13929_consen  224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK  289 (292)
T ss_pred             HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence            88775554 4456777788888888888888777777765     456666666666666555543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.28  E-value=0.52  Score=25.16  Aligned_cols=31  Identities=10%  Similarity=-0.125  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          363 TISALLEGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      +|..+..+|...|++++|++.+++..+..|.
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4555666666666666666666666665543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=92.06  E-value=5.7  Score=32.33  Aligned_cols=224  Identities=13%  Similarity=0.029  Sum_probs=127.7

Q ss_pred             CChHHHHHHHHHhhhcCCC-CCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 015329          129 GMIKHAMDTFYDMHLYGCK-RTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYL  207 (409)
Q Consensus       129 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~  207 (409)
                      +....+...+......... .....+......+...+....+...+...............+......+...+++..+.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            4444455555554433211 124555566666666666655555554432210112234455566666666677777777


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHH-HHHHcCChhhHHHHHHHHHhcCC--CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329          208 VMVEMQKLGVKPDVITYTTLIS-AFYKDNRPEIGNGLWNLMVCKGC--FPNLATFNVRIQHLVNKRRSWQANKLMGLMQR  284 (409)
Q Consensus       208 ~~~~m~~~g~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  284 (409)
                      .+.........+ ......... .+...|+++.+...+........  ......+......+...++.+.+...+.....
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            777776643332 122222222 56777777777777777754211  12233333444445667788888888887766


Q ss_pred             cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          285 FGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN-RKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       285 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      .........+..+...+...++.+.+...+......  .|+ ...+..+...+...+..+++...+.+....
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            532213566677777777778888888888877765  232 334444444444666788888777776654

>PRK11906 transcriptional regulator; Provisional

Probab=91.97  E-value=9.7  Score=34.83  Aligned_cols=159  Identities=8%  Similarity=0.002  Sum_probs=93.5

Q ss_pred             HHH--HHHHHHHHHcC-----ChhhHHHHHHHHHh-cCCCCCH-hhHHHHHHHHHh---------cCCHhHHHHHHHHHH
Q 015329          222 ITY--TTLISAFYKDN-----RPEIGNGLWNLMVC-KGCFPNL-ATFNVRIQHLVN---------KRRSWQANKLMGLMQ  283 (409)
Q Consensus       222 ~~~--~~ll~~~~~~~-----~~~~a~~~~~~m~~-~~~~~~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~  283 (409)
                      ..|  ...+.+.....     ..+.|+.+|.+... ..+.|+- ..|..+-.++..         ..+..+|.++-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            445  55565554422     33567777887772 2234443 333333332221         123445666666666


Q ss_pred             HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH-
Q 015329          284 RFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN-RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSV-  361 (409)
Q Consensus       284 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-  361 (409)
                      +.+.. |......+..+..-.|+.+.|...|++....  .|| ..+|......+.-.|+.++|.+.+++.++.  .|.. 
T Consensus       332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~  406 (458)
T PRK11906        332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRR  406 (458)
T ss_pred             hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--Cchhh
Confidence            66533 7777777777777778888888888888766  343 334444444555678888888888886654  3433 


Q ss_pred             --HHHHHHHHHHHhCCChHHHHHHHHH
Q 015329          362 --DTISALLEGLKKNNQPCKANTIMAL  386 (409)
Q Consensus       362 --~~~~~l~~~~~~~g~~~~a~~~~~~  386 (409)
                        ......++.|+.. ..+.|++++-+
T Consensus       407 ~~~~~~~~~~~~~~~-~~~~~~~~~~~  432 (458)
T PRK11906        407 KAVVIKECVDMYVPN-PLKNNIKLYYK  432 (458)
T ss_pred             HHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence              3333444456554 45667766644

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=91.87  E-value=6.6  Score=32.73  Aligned_cols=56  Identities=13%  Similarity=0.064  Sum_probs=35.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329          296 LVIKGFCRSGHLDMAKKVYSAMLGR--RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKD  351 (409)
Q Consensus       296 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  351 (409)
                      .+.+.|.+.|.+..|..-+++|.+.  ...-....+-.+..+|...|-.++|...-+-
T Consensus       172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v  229 (254)
T COG4105         172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV  229 (254)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            3456677777777777777777766  1111223455566777777777777766443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=91.84  E-value=0.31  Score=25.69  Aligned_cols=29  Identities=17%  Similarity=0.062  Sum_probs=20.0

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          365 SALLEGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       365 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      -.+..++.+.|++++|.+.|+++.+..|+
T Consensus         4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            34456666777777777777777777664

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.81  E-value=4.8  Score=30.95  Aligned_cols=111  Identities=14%  Similarity=0.093  Sum_probs=59.0

Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCC
Q 015329          264 QHLVNKRRSWQANKLMGLMQRFGIEPDEVTYN-LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ-EGD  341 (409)
Q Consensus       264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~  341 (409)
                      ..-.+.++.+++..++..+.-.  .|...... .-...+...|++.+|..+|+++...+  |.......|+..|.. .|+
T Consensus        18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence            3445677888888888888765  34322221 12233567888999999999887663  333333344444433 333


Q ss_pred             HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 015329          342 FNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANT  382 (409)
Q Consensus       342 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  382 (409)
                      .+ =..+-+++++.+  +|..+. .++..+....+...|.+
T Consensus        94 ~~-Wr~~A~evle~~--~d~~a~-~Lv~~Ll~~~~~~~a~~  130 (160)
T PF09613_consen   94 PS-WRRYADEVLESG--ADPDAR-ALVRALLARADLEPAHE  130 (160)
T ss_pred             hH-HHHHHHHHHhcC--CChHHH-HHHHHHHHhccccchhh
Confidence            22 122223344443  344333 33444545555555444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.79  E-value=3.3  Score=32.76  Aligned_cols=97  Identities=12%  Similarity=0.047  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC---CCCCCHHHHHH
Q 015329          292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN--RKIYQTMIHYLCQEGDFNLAYIMCKDSMKK---NWVPSVDTISA  366 (409)
Q Consensus       292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~  366 (409)
                      ..+..+...|++.|+.++|.+.|.++.+....+.  ...+-.+|......|++..+...+.+....   |-.++...--.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            3455666666677777777777766666533322  233455666666666666666655544322   11111111111


Q ss_pred             HH--HHHHhCCChHHHHHHHHHHH
Q 015329          367 LL--EGLKKNNQPCKANTIMALVQ  388 (409)
Q Consensus       367 l~--~~~~~~g~~~~a~~~~~~~~  388 (409)
                      ..  -.+...+++..|-+.|-...
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccC
Confidence            11  12334566777766665544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.60  E-value=5.1  Score=30.82  Aligned_cols=72  Identities=15%  Similarity=-0.039  Sum_probs=42.6

Q ss_pred             HHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc
Q 015329           88 SRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE  162 (409)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  162 (409)
                      ..-.+.++.+++..++..+....+.. ..+-..-...+.+.|+|.+|..+|+++.+.+  |.......|+..|..
T Consensus        18 ~~al~~~~~~D~e~lL~ALrvLRP~~-~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   18 SVALRLGDPDDAEALLDALRVLRPEF-PELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHccCChHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence            34456678888888888777654432 2222223445667888888888888876542  443434444444443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.10  E-value=3.1  Score=33.30  Aligned_cols=72  Identities=8%  Similarity=-0.012  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHhHHH
Q 015329          274 QANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR---RLMPNRKIYQTMIHYLCQEGDFNLAY  346 (409)
Q Consensus       274 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~  346 (409)
                      .|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+.   +-.+|+..+.+|+..+.+.|+++.|.
T Consensus       124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            34444444444443323333333333333 34555555555555443   22445555555555555555555543

>PRK11906 transcriptional regulator; Provisional

Probab=91.05  E-value=12  Score=34.22  Aligned_cols=79  Identities=6%  Similarity=-0.102  Sum_probs=33.8

Q ss_pred             hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329          239 IGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAML  318 (409)
Q Consensus       239 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  318 (409)
                      +|.+.-+...+.+ +-|......+..+..-.++.+.+...|++....+.. ...+|........-.|+.++|.+.+++..
T Consensus       322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al  399 (458)
T PRK11906        322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL  399 (458)
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            3334444444433 334444444444444444555555555555444211 12222222222333455555555555544


Q ss_pred             h
Q 015329          319 G  319 (409)
Q Consensus       319 ~  319 (409)
                      +
T Consensus       400 r  400 (458)
T PRK11906        400 Q  400 (458)
T ss_pred             c
Confidence            3

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.79  E-value=0.43  Score=27.53  Aligned_cols=25  Identities=12%  Similarity=0.001  Sum_probs=14.7

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHhcC
Q 015329          367 LLEGLKKNNQPCKANTIMALVQRRV  391 (409)
Q Consensus       367 l~~~~~~~g~~~~a~~~~~~~~~~~  391 (409)
                      +..+|...|+.+.|.++++++...+
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHcC
Confidence            4455666666666666666665443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.52  E-value=6.9  Score=30.49  Aligned_cols=88  Identities=11%  Similarity=0.074  Sum_probs=36.8

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 015329          302 CRSGHLDMAKKVYSAMLGRRLMPNRK-IYQTM--IHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPC  378 (409)
Q Consensus       302 ~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l--i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~  378 (409)
                      ...|+...|...|+++-.....|-.. -...|  ...+...|.++....-.+-+-..+-+.-...-..|.-+-.+.|++.
T Consensus       105 a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a  184 (221)
T COG4649         105 AQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFA  184 (221)
T ss_pred             hhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchH
Confidence            34455555555555554442222221 11111  1122344555555444444333332222233344444444555555


Q ss_pred             HHHHHHHHHHh
Q 015329          379 KANTIMALVQR  389 (409)
Q Consensus       379 ~a~~~~~~~~~  389 (409)
                      .|.+.|..+..
T Consensus       185 ~A~~~F~qia~  195 (221)
T COG4649         185 KAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHHHHc
Confidence            55555555543

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=90.21  E-value=15  Score=33.74  Aligned_cols=123  Identities=15%  Similarity=0.038  Sum_probs=81.8

Q ss_pred             HHHHhcCChhHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 015329          194 KAFCEMGILDKA-YLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRS  272 (409)
Q Consensus       194 ~~~~~~g~~~~a-~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  272 (409)
                      .--...|++-.| .+++..+......|+..-..+.|  +...|+++.+...+...... +-....+..+++....+.|++
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~  373 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW  373 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence            334455666655 44555555554455555444443  45678888888887766543 334567778888888889999


Q ss_pred             hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          273 WQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       273 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      +.|..+-.-|....++ +..........-...|-++++...|++....
T Consensus       374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~  420 (831)
T PRK15180        374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL  420 (831)
T ss_pred             HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence            9999888888877766 4444444444445567788888888887654

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=89.96  E-value=6  Score=29.91  Aligned_cols=80  Identities=8%  Similarity=0.121  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCC-hhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329          189 FNIVIKAFCEMGILDKAYLVMVEMQKLGV-----KPDVITYTTLISAFYKDNR-PEIGNGLWNLMVCKGCFPNLATFNVR  262 (409)
Q Consensus       189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-----~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l  262 (409)
                      .|.++......+++...+.+++.+.....     ..+...|++++.+..+..- ---+..+|+.|++.+.+.+..-|..+
T Consensus        42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l  121 (145)
T PF13762_consen   42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL  121 (145)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            56666666666666666666666532100     1233445555555543333 22344555555555555555555555


Q ss_pred             HHHHHh
Q 015329          263 IQHLVN  268 (409)
Q Consensus       263 l~~~~~  268 (409)
                      |.++.+
T Consensus       122 i~~~l~  127 (145)
T PF13762_consen  122 IKAALR  127 (145)
T ss_pred             HHHHHc
Confidence            555444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=89.53  E-value=0.51  Score=25.42  Aligned_cols=24  Identities=8%  Similarity=-0.050  Sum_probs=13.2

Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHH
Q 015329          358 VPSVDTISALLEGLKKNNQPCKAN  381 (409)
Q Consensus       358 ~~~~~~~~~l~~~~~~~g~~~~a~  381 (409)
                      +-+...|..+...|...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            344555555555555555555553

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.39  E-value=1.1  Score=25.06  Aligned_cols=28  Identities=18%  Similarity=0.243  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329          187 FSFNIVIKAFCEMGILDKAYLVMVEMQK  214 (409)
Q Consensus       187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~  214 (409)
                      .+++.+...|...|++++|..++++...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4566677777777777777777766653

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=89.38  E-value=3.8  Score=28.28  Aligned_cols=46  Identities=9%  Similarity=0.244  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329          274 QANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG  319 (409)
Q Consensus       274 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  319 (409)
                      ++.+-+..+....+.|++....+.+++|.+.+++..|.++|+..+.
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~   70 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD   70 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4445555555555666666666666666666666666666665553

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=89.17  E-value=5.9  Score=27.69  Aligned_cols=49  Identities=16%  Similarity=0.168  Sum_probs=25.1

Q ss_pred             HHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCC
Q 015329          133 HAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFH  181 (409)
Q Consensus       133 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  181 (409)
                      +..+-++.+...++.|++.+..+.+++|-+.+++..|.++++.+..+.|
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~   76 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG   76 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence            4444555555555566666666666666666666666666654444433

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=89.07  E-value=43  Score=37.49  Aligned_cols=147  Identities=8%  Similarity=-0.012  Sum_probs=95.9

Q ss_pred             hhcCChHHHHHHHHHhhcCCCCC-CccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHH
Q 015329           55 KAERDPEKLFQLFKANAHNRIVI-ENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKH  133 (409)
Q Consensus        55 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  133 (409)
                      .+.+.+.+|+-.++.-.....-. ....-|..+...|+.-++.|....+.....     .+..++. -|......|+++.
T Consensus      1394 frc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~-qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1394 FRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQ-QILEHEASGNWAD 1467 (2382)
T ss_pred             HhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHH-HHHHHHhhccHHH
Confidence            36789999999999842111001 122334444558999999998888876421     1334444 4455678999999


Q ss_pred             HHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHH-HHHHHHHhcCChhHHHHHHH
Q 015329          134 AMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFN-IVIKAFCEMGILDKAYLVMV  210 (409)
Q Consensus       134 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~  210 (409)
                      |...|+.+.+.+ ++...+++-++......+.++.+....+-....  ..+....++ .=+.+--+.++||.......
T Consensus      1468 a~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred             HHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence            999999999876 555778888888888888887777766433222  122233333 33455578888888777665

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.00  E-value=10  Score=30.23  Aligned_cols=131  Identities=9%  Similarity=0.035  Sum_probs=80.0

Q ss_pred             HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---
Q 015329          256 LATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYN--LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQ---  330 (409)
Q Consensus       256 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~---  330 (409)
                      ...|..++.... .+.+ +.......+......-...++.  .+...+...|++++|...++.....   |....+.   
T Consensus        54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~  128 (207)
T COG2976          54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA  128 (207)
T ss_pred             HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence            445555555543 3333 4444555555443221222222  3345678889999999988877654   2222333   


Q ss_pred             --HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          331 --TMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       331 --~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                        .|.+.....|.+|+|+..++...+.++  .......-.+.+...|+.++|+.-+++..+.+..
T Consensus       129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         129 ALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence              345567788999999998886554432  2222333447888999999999999998888633

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=88.47  E-value=19  Score=32.79  Aligned_cols=351  Identities=13%  Similarity=0.098  Sum_probs=175.5

Q ss_pred             CCCChHHHHh--hhhcCChHHHHHHHHHhhcC--CCCC-----------CccchHHHHHHHHhcCCCchhHHHHHHHhhh
Q 015329           44 KPLEPPALVK--LKAERDPEKLFQLFKANAHN--RIVI-----------ENKYAFEDTVSRLAGARRFDYIEHLLEHQKS  108 (409)
Q Consensus        44 ~~~~~~~l~~--~~~~~~~~~a~~~~~~~~~~--~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  108 (409)
                      +..+..++..  ..+.++..+|++.+..-..+  +.-+           +|-..=+..+..++..|++.++..+++.+..
T Consensus        77 ~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~  156 (549)
T PF07079_consen   77 KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE  156 (549)
T ss_pred             CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            4455555554  34678888888888766544  1011           1111123446778889999999988887764


Q ss_pred             CC----CCCChhHHHHHHHHHHhc--------CCh-------HHHHHHHHHhhhcC------CCCCHHhHHHHHHHHHcc
Q 015329          109 LP----QGRREGFIMRIMMLYGKA--------GMI-------KHAMDTFYDMHLYG------CKRTVKSLNAALKVLTES  163 (409)
Q Consensus       109 ~~----~~~~~~~~~~l~~~~~~~--------~~~-------~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~  163 (409)
                      .-    ..-+...|+.++-.+++.        ...       +-+.-...+|....      +-|.......++....-.
T Consensus       157 ~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~  236 (549)
T PF07079_consen  157 RLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIV  236 (549)
T ss_pred             HHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhC
Confidence            32    235667777644333321        111       11222222222111      123223233333322211


Q ss_pred             C--CHHHHHHHHHhcCccCCCCcCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCC
Q 015329          164 R--DLKAIQAFLMEVPEKFHIQFDIF-SFNIVIKAFCEMGILDKAYLVMVEMQKLGVK----PDVITYTTLISAFYKDNR  236 (409)
Q Consensus       164 ~--~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~ll~~~~~~~~  236 (409)
                      .  ...-..+++... ++.-+.|+-. ....+...+.+  +.+++..+-+.+....+.    -=..+|..++....+.++
T Consensus       237 p~e~l~~~mq~l~~W-e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~  313 (549)
T PF07079_consen  237 PKERLPPLMQILENW-ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ  313 (549)
T ss_pred             CHhhccHHHHHHHHH-HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1  112223333222 3334455422 23344444443  344444443333322111    124567777777777787


Q ss_pred             hhhHHHHHHHHHhcCCCCCH---------------------hhHHH------------------------HHHH---HHh
Q 015329          237 PEIGNGLWNLMVCKGCFPNL---------------------ATFNV------------------------RIQH---LVN  268 (409)
Q Consensus       237 ~~~a~~~~~~m~~~~~~~~~---------------------~~~~~------------------------ll~~---~~~  268 (409)
                      -..|-+.+..+.-.  .|+.                     ..++.                        ++.+   +=+
T Consensus       314 T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~  391 (549)
T PF07079_consen  314 TEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWE  391 (549)
T ss_pred             HHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHh
Confidence            77777777666532  1211                     11111                        0000   011


Q ss_pred             cCC-HhHHHHHHHHHHHcCCCcCHHHHHHH----HHHHHh---cCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHH-
Q 015329          269 KRR-SWQANKLMGLMQRFGIEPDEVTYNLV----IKGFCR---SGHLDMAKKVYSAMLGRRLMP----NRKIYQTMIHY-  335 (409)
Q Consensus       269 ~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l----i~~~~~---~g~~~~a~~~~~~m~~~~~~p----~~~~~~~li~~-  335 (409)
                      .|. -++|+.+++.+.+-. .-|...-|.+    =.+|.+   ...+..-..+-+-+.+.|+.|    +...-|.+.++ 
T Consensus       392 ~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE  470 (549)
T PF07079_consen  392 IGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE  470 (549)
T ss_pred             cCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence            222 455666666655432 1122222222    122322   223344444444445557665    33445555544 


Q ss_pred             -HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHH
Q 015329          336 -LCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAF  402 (409)
Q Consensus       336 -~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  402 (409)
                       +...|++.++.-.-.-+.+  +.|++.+|..+.-++....++++|..++..+--+..-.+..+..++
T Consensus       471 yLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl  536 (549)
T PF07079_consen  471 YLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKAL  536 (549)
T ss_pred             HHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence             4568999998876655554  5799999999999999999999999999877543322333343333

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.47  E-value=24  Score=33.91  Aligned_cols=49  Identities=6%  Similarity=-0.047  Sum_probs=23.2

Q ss_pred             hHHHHHHHHHhhcCCCCCCccchHHHHHHH-HhcCCCchhHHHHHHHhhh
Q 015329           60 PEKLFQLFKANAHNRIVIENKYAFEDTVSR-LAGARRFDYIEHLLEHQKS  108 (409)
Q Consensus        60 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~  108 (409)
                      ...|++.++.....+.+.+-...-...... .....+.+.|..+++.+..
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~  277 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE  277 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence            455777777766665221111111111112 3344566667666666644

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.36  E-value=1.4  Score=24.59  Aligned_cols=25  Identities=8%  Similarity=0.218  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329          328 IYQTMIHYLCQEGDFNLAYIMCKDS  352 (409)
Q Consensus       328 ~~~~li~~~~~~g~~~~a~~~~~~m  352 (409)
                      +++.+...|...|++++|..++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHH
Confidence            4444555555555555555555444

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=87.99  E-value=23  Score=32.96  Aligned_cols=162  Identities=10%  Similarity=0.085  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 015329          187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHL  266 (409)
Q Consensus       187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  266 (409)
                      ...-+++..+..+..+.-+..+-.+|...|  -+-..|-.++..|... ..++-..+|+++.+..+  |......-+..+
T Consensus        67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~  141 (711)
T COG1747          67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADK  141 (711)
T ss_pred             hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHH
Confidence            344445555555555555555555555443  1344455555555444 44445555555554422  222222222222


Q ss_pred             HhcCCHhHHHHHHHHHHHcCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcC
Q 015329          267 VNKRRSWQANKLMGLMQRFGIEP-----DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-RLMPNRKIYQTMIHYLCQEG  340 (409)
Q Consensus       267 ~~~~~~~~a~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g  340 (409)
                      ...++.+.+..+|.++...-++-     -...|.-+...-  ..+.+....+..++.+. |...-...+.-+-.-|....
T Consensus       142 yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e  219 (711)
T COG1747         142 YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE  219 (711)
T ss_pred             HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence            22344555555555443321110     011222222211  23344444444444333 33333333444444455555


Q ss_pred             CHhHHHHHHHHHHhC
Q 015329          341 DFNLAYIMCKDSMKK  355 (409)
Q Consensus       341 ~~~~a~~~~~~m~~~  355 (409)
                      ++++|++++...++.
T Consensus       220 N~~eai~Ilk~il~~  234 (711)
T COG1747         220 NWTEAIRILKHILEH  234 (711)
T ss_pred             CHHHHHHHHHHHhhh
Confidence            555555555544443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.91  E-value=5.2  Score=31.95  Aligned_cols=92  Identities=10%  Similarity=-0.004  Sum_probs=59.1

Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 015329          264 QHLVNKRRSWQANKLMGLMQRFGIEPD----EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE  339 (409)
Q Consensus       264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  339 (409)
                      .-+.+.|++++|..-|...++.-....    ...|..-..++.+.+.++.|++--...++.+.. .......-..+|.+.
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~  181 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM  181 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence            356678888888888888876532211    233444455667778888888777777765432 222223334567777


Q ss_pred             CCHhHHHHHHHHHHhCC
Q 015329          340 GDFNLAYIMCKDSMKKN  356 (409)
Q Consensus       340 g~~~~a~~~~~~m~~~~  356 (409)
                      ..+++|++=|+.+.+..
T Consensus       182 ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  182 EKYEEALEDYKKILESD  198 (271)
T ss_pred             hhHHHHHHHHHHHHHhC
Confidence            88888888888877753

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=87.89  E-value=3.4  Score=30.07  Aligned_cols=38  Identities=16%  Similarity=0.284  Sum_probs=18.2

Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329          314 YSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKD  351 (409)
Q Consensus       314 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  351 (409)
                      +..+..-++.|++......+++|.+.+++..|.++|+-
T Consensus        72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~  109 (149)
T KOG4077|consen   72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEA  109 (149)
T ss_pred             HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            33333334445555555555555555555555555444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=87.88  E-value=0.8  Score=24.65  Aligned_cols=21  Identities=24%  Similarity=0.534  Sum_probs=10.5

Q ss_pred             CHHHHHHHHHHHHHcCCHhHH
Q 015329          325 NRKIYQTMIHYLCQEGDFNLA  345 (409)
Q Consensus       325 ~~~~~~~li~~~~~~g~~~~a  345 (409)
                      |...|+.+...|...|++++|
T Consensus        12 n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhh
Confidence            444455555555555555544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.85  E-value=1.4  Score=23.36  Aligned_cols=30  Identities=10%  Similarity=-0.105  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329          363 TISALLEGLKKNNQPCKANTIMALVQRRVP  392 (409)
Q Consensus       363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  392 (409)
                      +|..+...|...|+.++|.+.|++..+..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344555555666666666666665554443

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=87.22  E-value=2.2  Score=36.95  Aligned_cols=78  Identities=6%  Similarity=-0.050  Sum_probs=48.4

Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329          264 QHLVNKRRSWQANKLMGLMQRFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF  342 (409)
Q Consensus       264 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  342 (409)
                      .-|.+.|.+++|++.|......  .| |.+++..-..+|.+...+..|..=-......        -...+.+|.+.+..
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~A  174 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQA  174 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHH
Confidence            4678888888888888776654  44 6777777777888887777666544444432        12334555555444


Q ss_pred             hHHHHHHHH
Q 015329          343 NLAYIMCKD  351 (409)
Q Consensus       343 ~~a~~~~~~  351 (409)
                      .+++....+
T Consensus       175 R~~Lg~~~E  183 (536)
T KOG4648|consen  175 RESLGNNME  183 (536)
T ss_pred             HHHHhhHHH
Confidence            444444333

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.15  E-value=2.2  Score=22.61  Aligned_cols=27  Identities=11%  Similarity=0.176  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQK  214 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~  214 (409)
                      +|..+...|...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            455666666666666666666666655

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.94  E-value=13  Score=35.16  Aligned_cols=97  Identities=15%  Similarity=0.169  Sum_probs=45.1

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 015329          198 EMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANK  277 (409)
Q Consensus       198 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  277 (409)
                      +.|+++.|.++..+..      +..-|..|.++..+.+++..|.+.|.....         |..|+..+...|+-+....
T Consensus       649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~  713 (794)
T KOG0276|consen  649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV  713 (794)
T ss_pred             hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence            3455555544443321      344455555555555555555555544332         3344444555555544444


Q ss_pred             HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015329          278 LMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYS  315 (409)
Q Consensus       278 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  315 (409)
                      +-....+.|..      |....+|...|+++++.+++.
T Consensus       714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi  745 (794)
T KOG0276|consen  714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLI  745 (794)
T ss_pred             HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence            44444444321      222333444555555555544

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=86.59  E-value=23  Score=31.55  Aligned_cols=67  Identities=9%  Similarity=-0.080  Sum_probs=51.9

Q ss_pred             CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCC---CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329          219 PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFP---NLATFNVRIQHLVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       219 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  285 (409)
                      ....+|..+...+.+.|.++.|...+..+...+...   ++...-.-....-..|+..+|+..++...+.
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~  213 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC  213 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            356678888999999999999999999998754222   3444445566677789999999999888773

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.16  E-value=0.62  Score=35.36  Aligned_cols=51  Identities=12%  Similarity=0.089  Sum_probs=19.8

Q ss_pred             HHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 015329           88 SRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTF  138 (409)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  138 (409)
                      ..+.+.+..+.....++.+...+...+..+.+.++..|++.+..+...+++
T Consensus        15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L   65 (143)
T PF00637_consen   15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL   65 (143)
T ss_dssp             HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence            333334444444444444443333333444444444444444333333333

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=86.14  E-value=11  Score=32.75  Aligned_cols=56  Identities=9%  Similarity=0.146  Sum_probs=27.6

Q ss_pred             HHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329          159 VLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQK  214 (409)
Q Consensus       159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  214 (409)
                      +.-+.|+..+|.+.++++++...+..-......++.++....-+.++..++.+..+
T Consensus       284 CARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd  339 (556)
T KOG3807|consen  284 CARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD  339 (556)
T ss_pred             HHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            33445666666666655555433221122344555555555555555555444443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.12  E-value=11  Score=30.22  Aligned_cols=79  Identities=11%  Similarity=0.106  Sum_probs=61.1

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCCh
Q 015329          301 FCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK---NWVPSVDTISALLEGLKKNNQP  377 (409)
Q Consensus       301 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~g~~  377 (409)
                      +.+.|+ +.|.+.|-.+...+.--++.....+...|. ..+.+++..++.+.++.   +-.+|+..+..|...+.+.|++
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            455554 577888888887766657776666666665 67889999998887764   3478899999999999999999


Q ss_pred             HHHH
Q 015329          378 CKAN  381 (409)
Q Consensus       378 ~~a~  381 (409)
                      +.|-
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            9885

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.63  E-value=2.9  Score=21.99  Aligned_cols=27  Identities=11%  Similarity=0.226  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQK  214 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~  214 (409)
                      .|..+...+...|++++|++.|++..+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            455566666777777777777776665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=83.99  E-value=17  Score=27.67  Aligned_cols=17  Identities=24%  Similarity=0.292  Sum_probs=7.4

Q ss_pred             hcCChhHHHHHHHHHHh
Q 015329          198 EMGILDKAYLVMVEMQK  214 (409)
Q Consensus       198 ~~g~~~~a~~~~~~m~~  214 (409)
                      ..|+|++|.++|+++.+
T Consensus        56 ~rg~w~eA~rvlr~l~~   72 (153)
T TIGR02561        56 ARGNYDEAARILRELLS   72 (153)
T ss_pred             HcCCHHHHHHHHHhhhc
Confidence            34444444444444443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.78  E-value=18  Score=34.20  Aligned_cols=99  Identities=10%  Similarity=-0.037  Sum_probs=60.1

Q ss_pred             HHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 015329          232 YKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAK  311 (409)
Q Consensus       232 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~  311 (409)
                      .+.|+++.|.++..+.      .+..-|..|-.+....+++..|.+.|.....         |..|+-.+...|+-+...
T Consensus       648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~  712 (794)
T KOG0276|consen  648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA  712 (794)
T ss_pred             hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence            3456666665544322      2566677777777777777777777766542         445666666667666555


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329          312 KVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKD  351 (409)
Q Consensus       312 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  351 (409)
                      .+-....+.|..      |...-+|...|+++++.+++.+
T Consensus       713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence            555555554432      3334456667888877777654

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.11  E-value=56  Score=33.11  Aligned_cols=26  Identities=4%  Similarity=0.098  Sum_probs=19.3

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHhcCc
Q 015329          153 LNAALKVLTESRDLKAIQAFLMEVPE  178 (409)
Q Consensus       153 ~~~ll~~~~~~~~~~~a~~~~~~~~~  178 (409)
                      |..|+..|...|..++|.+++.+...
T Consensus       507 y~~Li~LY~~kg~h~~AL~ll~~l~d  532 (877)
T KOG2063|consen  507 YRELIELYATKGMHEKALQLLRDLVD  532 (877)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhc
Confidence            66777777777777777777766654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=82.96  E-value=4.3  Score=21.35  Aligned_cols=27  Identities=11%  Similarity=0.166  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQK  214 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~  214 (409)
                      +|..+...|...|++++|.+.|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455556666666666666666666554

...

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=82.90  E-value=25  Score=29.95  Aligned_cols=88  Identities=9%  Similarity=0.100  Sum_probs=52.1

Q ss_pred             HHHHHHHccCCHHHHHHHHHh-cCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329          155 AALKVLTESRDLKAIQAFLME-VPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK  233 (409)
Q Consensus       155 ~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~  233 (409)
                      .=|+++++.+++.++..+.-+ ...-..++|.+  ...-|-.|.+.|++..+.++-....+..-.-+...|..+.+.|..
T Consensus        88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl  165 (309)
T PF07163_consen   88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL  165 (309)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence            347778888888555544322 11122344443  334444577888888888877777654323344457777766655


Q ss_pred             -----cCChhhHHHHH
Q 015329          234 -----DNRPEIGNGLW  244 (409)
Q Consensus       234 -----~~~~~~a~~~~  244 (409)
                           .|.+++|+++.
T Consensus       166 ~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  166 HVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHhccccHHHHHHHH
Confidence                 57777777665

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=82.89  E-value=19  Score=27.42  Aligned_cols=53  Identities=9%  Similarity=0.202  Sum_probs=33.2

Q ss_pred             HhcCCHhHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015329          267 VNKRRSWQANKLMGLMQRFGIE-PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR  321 (409)
Q Consensus       267 ~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  321 (409)
                      ...++++++..++..|.-...+ +...++-..  .+...|++++|..+|+++.+.+
T Consensus        21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence            3467778888888777655222 123333332  3466788888888888877763

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.86  E-value=13  Score=30.30  Aligned_cols=77  Identities=13%  Similarity=0.085  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 015329          293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK--NWVPSVDTISALLEG  370 (409)
Q Consensus       293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~  370 (409)
                      |.+..++.+.+.+.+.+++...+.-.+.... |..+-..+++.++-.|++++|..-++-.-..  ...+-..+|..++++
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            3455667778888999999998887776433 5666778899999999999998776654332  234555677776654

>PRK09687 putative lyase; Provisional

Probab=80.92  E-value=36  Score=29.38  Aligned_cols=136  Identities=15%  Similarity=0.042  Sum_probs=67.9

Q ss_pred             CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 015329          220 DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR-RSWQANKLMGLMQRFGIEPDEVTYNLVI  298 (409)
Q Consensus       220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li  298 (409)
                      +..+-...+.++++.++ +++...+-.+.+.   +|...-...+.++.+.+ +...+...+..+..   .++..+-...+
T Consensus       141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~  213 (280)
T PRK09687        141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI  213 (280)
T ss_pred             CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence            44444455555655554 3444444444432   23334444444444432 12344444444442   33555555666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329          299 KGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGL  371 (409)
Q Consensus       299 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~  371 (409)
                      .++.+.|+. .|...+-...+.+   +  .....+.++...|.. +|...+..+.+.  .+|..+-...+.+|
T Consensus       214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~  277 (280)
T PRK09687        214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL  277 (280)
T ss_pred             HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence            666666663 4444444444432   2  233556666666663 566666666653  34655555555544

>PHA02875 ankyrin repeat protein; Provisional

Probab=80.88  E-value=46  Score=30.58  Aligned_cols=76  Identities=18%  Similarity=0.082  Sum_probs=35.2

Q ss_pred             HhcCCCchhHHHHHHHhhhCCCCCChh--HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHH--hHHHHHHHHHccCC
Q 015329           90 LAGARRFDYIEHLLEHQKSLPQGRREG--FIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVK--SLNAALKVLTESRD  165 (409)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~  165 (409)
                      .+..|+.+-+..+++.    |..++..  .-.+.+...+..|+.+    +.+.+.+.|..|+..  .....+...+..|+
T Consensus         9 A~~~g~~~iv~~Ll~~----g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          9 AILFGELDIARRLLDI----GINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             HHHhCCHHHHHHHHHC----CCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence            3455666555555543    3222211  1123444445566654    333344445444322  11234445556677


Q ss_pred             HHHHHHHH
Q 015329          166 LKAIQAFL  173 (409)
Q Consensus       166 ~~~a~~~~  173 (409)
                      .+.+..++
T Consensus        81 ~~~v~~Ll   88 (413)
T PHA02875         81 VKAVEELL   88 (413)
T ss_pred             HHHHHHHH
Confidence            76666666

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=80.55  E-value=23  Score=26.88  Aligned_cols=79  Identities=10%  Similarity=0.150  Sum_probs=34.9

Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHHHcCC-----CcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329          260 NVRIQHLVNKRRSWQANKLMGLMQRFGI-----EPDEVTYNLVIKGFCRSGH-LDMAKKVYSAMLGRRLMPNRKIYQTMI  333 (409)
Q Consensus       260 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li  333 (409)
                      ++++......+++...+.+++.+.....     ..+...|.+++.+.++..- --.+..+|.-|.+.+.+++..-|..+|
T Consensus        43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li  122 (145)
T PF13762_consen   43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI  122 (145)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            4444444445555555555544421100     1133344555555443333 223344444444444455555555555


Q ss_pred             HHHHH
Q 015329          334 HYLCQ  338 (409)
Q Consensus       334 ~~~~~  338 (409)
                      .++.+
T Consensus       123 ~~~l~  127 (145)
T PF13762_consen  123 KAALR  127 (145)
T ss_pred             HHHHc
Confidence            55443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	409
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 66.0 bits (159), Expect = 1e-11
 Identities = 25/221 (11%), Positives = 62/221 (28%), Gaps = 3/221 (1%)

Query: 100 EHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKV 159
             L +  +  P+   E  + R++        +                   + L A  K 
Sbjct: 77  GCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKC 136

Query: 160 LTESRDLKAIQAFLMEVPEKFHIQ--FDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGV 217
              +  L      L+    +   +    +  +N V+  +   G   +   V+  ++  G+
Sbjct: 137 CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL 196

Query: 218 KPDVITYTTLISAFYK-DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQAN 276
            PD+++Y   +    + D            M  +G         V +            +
Sbjct: 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256

Query: 277 KLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAM 317
           K+          P  V  + +++            K++  +
Sbjct: 257 KVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 4e-07
 Identities = 58/340 (17%), Positives = 97/340 (28%), Gaps = 99/340 (29%)

Query: 133 HAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEV---PEKFHIQ------ 183
           H MD     H Y  K  +     A     ++ D K +Q     +    E  HI       
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFV---DNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 184 ------FDIF--SFNIVIKAFCEMGILDKAY-LVMVEMQKLGVKPDVIT--YTTLISAFY 232
                 F         +++ F E  +L   Y  +M  ++    +P ++T  Y       Y
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 233 KDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEV 292
            DN+                    A +NV       K R         L++   + P + 
Sbjct: 121 NDNQV------------------FAKYNVSRLQPYLKLRQA-------LLE---LRPAK- 151

Query: 293 TYNLVI---KGF---------CRSGHLD--MAKKVYSAMLGRR------LMPNRKIYQTM 332
             N++I    G          C S  +   M  K++   L         L   +K+   +
Sbjct: 152 --NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 333 IHYLCQEGDFNLAYIMCKDSMK---KNWVPSVDTISALL--------EGLKKNNQPCK-- 379
                   D +    +   S++   +  + S    + LL        +     N  CK  
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 380 -----ANTIMALVQRRVPHFSSNQLS-AF-----KSILSK 408
                      L      H S +  S        KS+L K
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 72/523 (13%), Positives = 133/523 (25%), Gaps = 210/523 (40%)

Query: 42  VDKPLEP--PALV-KLKAE-RDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFD 97
           V++ L      L+  +K E R P  + +++     +R+  +N+   +  VSR        
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAKYNVSR-------- 133

Query: 98  YIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGM--------------IKHAMD--TFYDM 141
            ++  L+ +++L + R    ++    + G  G               ++  MD   F+ +
Sbjct: 134 -LQPYLKLRQALLELRPAKNVL----IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-L 187

Query: 142 HLYGCKRTV--------------------------------------------KSLNAAL 157
           +L  C                                                K     L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 158 KVLTESRDLKAIQAF------LM-----------EVPEKFHIQFDIFSFNIVIKAFCE-- 198
            VL   ++ KA  AF      L+                 HI  D  S            
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS-----MTLTPDE 302

Query: 199 -MGILDKAYLVMVEMQKL-----GVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVC--- 249
              +L K YL     Q L        P  +   ++I+   +D      N  W  + C   
Sbjct: 303 VKSLLLK-YLDC-RPQDLPREVLTTNPRRL---SIIAESIRDGLATWDN--WKHVNCDKL 355

Query: 250 ----------------KGCFPNLATF--NVRI-----------------QHLVNK--RRS 272
                           +  F  L+ F  +  I                   +VNK  + S
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 273 ----WQANK---LMGLMQRFGIEPDEVT---------YNLVIKGFCRSG----------- 305
                       +  +     ++ +            YN+  K F               
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI-PKTFDSDDLIPPYLDQYFY 474

Query: 306 -----HLDMAKKVYSAMLGRRLMPN-----RKIYQTMIHYLCQEGDFNL-----AYIMCK 350
                HL   +      L R +  +     +KI      +       N       Y    
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY---- 530

Query: 351 DSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMA----LVQR 389
              K     +      L+  +       + N I +    L++ 
Sbjct: 531 ---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 50/292 (17%), Positives = 92/292 (31%), Gaps = 83/292 (28%)

Query: 23  ALNNIRAVSLNKFPNREPLVDKPLEPPALVKLKAERDPEKLFQ---LFKANAHNRIVIEN 79
            L  I   SLN            LEP          +  K+F    +F  +AH    I  
Sbjct: 354 KLTTIIESSLNV-----------LEPA---------EYRKMFDRLSVFPPSAH----IP- 388

Query: 80  KYAFEDTVSRLAGARRFDYIEHLLE--HQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDT 137
                  +S +        +  ++   H+ SL + + +   + I  +Y +   +K  ++ 
Sbjct: 389 ----TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE---LKVKLEN 441

Query: 138 FYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQA------FL------MEVPEKFHIQFD 185
            Y +H    +  V   N       +S DL            +      +E PE+  +   
Sbjct: 442 EYALH----RSIVDHYNIPKTF--DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 186 IF-SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLW 244
           +F  F      F E  I   +         L     +  Y   I     DN P+     +
Sbjct: 496 VFLDFR-----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC----DNDPK-----Y 541

Query: 245 NLMVCKGCFPNLATFNVRI-QHLVNKRRSWQANKLMGLMQRFGIEPDEVTYN 295
             +V       +  F  +I ++L+        +K   L++   +  DE  + 
Sbjct: 542 ERLVN-----AILDFLPKIEENLIC-------SKYTDLLRIALMAEDEAIFE 581

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	409
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.91
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.89
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.88
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.87
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.87
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.87
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.86
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.85
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.84
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.83
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.82
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.82
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.82
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.81
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.81
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.81
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.79
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.77
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.76
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.73
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.73
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.72
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.72
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.71
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.69
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.69
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.68
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.68
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.67
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.67
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.66
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.65
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.65
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.65
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.64
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.64
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.63
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.63
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.63
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.63
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.61
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.61
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.6
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.58
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.58
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.57
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.56
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.55
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.55
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.54
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.53
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.53
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.52
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.51
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.49
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.49
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.49
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.48
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.47
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.47
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.47
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.47
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.44
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.42
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.41
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.4
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.37
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.35
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.33
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.32
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.32
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.3
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.27
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.24
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.23
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.23
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.22
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.18
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.17
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.15
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.11
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.09
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.07
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.05
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.03
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.01
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.01
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.98
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.98
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.97
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.97
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.97
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.97
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.96
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.95
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.95
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.94
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.93
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.92
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.84
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.82
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.82
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.8
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.79
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.78
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.77
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.75
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.75
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.75
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.74
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.73
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.72
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.71
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.7
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.7
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.7
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.7
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.69
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.69
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.67
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.66
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.66
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.65
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.65
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.65
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.64
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.63
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.59
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.58
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.58
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.57
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.57
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.56
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.53
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.52
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.51
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.51
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.5
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.5
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.48
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.47
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.46
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.44
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.43
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.43
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.42
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.42
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.4
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.38
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.37
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.36
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.36
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.34
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.34
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.34
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.34
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.33
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.25
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.25
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.25
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.23
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.22
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.21
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.19
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.17
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.16
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.15
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.14
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.13
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.09
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.06
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.02
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.98
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.92
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.91
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.86
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.83
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.83
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.82
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.81
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.72
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.71
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.67
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.66
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.62
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.6
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.4
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.36
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.35
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.32
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.2
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.18
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	97.07
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.05
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.01
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.91
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.88
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.8
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.79
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.78
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.64
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.64
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.61
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.52
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.35
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.18
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.01
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.99
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.93
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.67
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.47
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.13
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.07
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	94.61
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.53
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.34
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.28
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.05
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.89
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	93.87
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.52
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	93.0
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.74
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	92.5
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.23
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.06
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	92.05
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.9
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	91.7
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	91.68
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	91.34
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.0
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.97
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	88.78
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	88.38
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	88.32
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	87.45
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	86.69
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	85.89
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	84.99
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	84.44
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	83.49
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	82.39
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	80.29

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.1e-34  Score=267.08  Aligned_cols=206  Identities=20%  Similarity=0.232  Sum_probs=155.4

Q ss_pred             HHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------h
Q 015329          168 AIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNR---------P  237 (409)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~---------~  237 (409)
                      .++.+.+++ ++.+..+. ...++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+.         +
T Consensus         8 ~~e~L~~~~-~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            8 PSENLSRKA-KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             hHHHHHHHH-HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            344444333 33343333 335777788888888888888888888888888888888888888876654         4


Q ss_pred             hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015329          238 EIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAM  317 (409)
Q Consensus       238 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  317 (409)
                      +.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            67888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 015329          318 LGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKN  374 (409)
Q Consensus       318 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~  374 (409)
                      .+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|+.|+..||+.++..|...
T Consensus       167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            888888888888888888888888888888888888888888888888888777653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=3.3e-33  Score=257.26  Aligned_cols=206  Identities=14%  Similarity=0.123  Sum_probs=181.6

Q ss_pred             hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC---------H
Q 015329          203 DKAYLVMVEMQKLGVKPD-VITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRR---------S  272 (409)
Q Consensus       203 ~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~  272 (409)
                      ..+..+.+++.+.+.... ...++.+|++|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+.         +
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            345566677777776544 346889999999999999999999999999999999999999999997665         6


Q ss_pred             hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329          273 WQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS  352 (409)
Q Consensus       273 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  352 (409)
                      +.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhhcc
Q 015329          353 MKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSK  408 (409)
Q Consensus       353 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~k  408 (409)
                      .+.|+.||..||+.|+.+|++.|+.++|.+++++|++.+..++..++..++..|+.
T Consensus       167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999988764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.4e-31  Score=251.07  Aligned_cols=287  Identities=8%  Similarity=-0.044  Sum_probs=226.2

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHH
Q 015329          114 REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVI  193 (409)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll  193 (409)
                      +..++..++..|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|+.++|..+++++...  .+.+..+++.++
T Consensus       304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~  380 (597)
T 2xpi_A          304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVG  380 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHH
Confidence            44455566666777777777777777776554 345566777777777777777777777665432  234677888888


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHh
Q 015329          194 KAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSW  273 (409)
Q Consensus       194 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~  273 (409)
                      ..|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|+++
T Consensus       381 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~  458 (597)
T 2xpi_A          381 IYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNIL  458 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHH
Confidence            9999999999999999988875433 67788999999999999999999999988764 557888889999999999999


Q ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHhHHHH
Q 015329          274 QANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLMPN--RKIYQTMIHYLCQEGDFNLAYI  347 (409)
Q Consensus       274 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~  347 (409)
                      +|.++|+++.+... .+..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.+
T Consensus       459 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~  537 (597)
T 2xpi_A          459 LANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID  537 (597)
T ss_dssp             HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999999887653 37888999999999999999999999988776    66777  7889999999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhhcc
Q 015329          348 MCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSK  408 (409)
Q Consensus       348 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~k  408 (409)
                      +|+++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+..|.. ...+..+..+|..
T Consensus       538 ~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~  596 (597)
T 2xpi_A          538 ALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE-IMASDLLKRALEE  596 (597)
T ss_dssp             HHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHTTC-
T ss_pred             HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHhc
Confidence            999888765 5578899999999999999999999999998887655 4455666666654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.9e-31  Score=251.88  Aligned_cols=352  Identities=9%  Similarity=-0.083  Sum_probs=283.4

Q ss_pred             ChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHH
Q 015329           47 EPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYG  126 (409)
Q Consensus        47 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  126 (409)
                      +...+..+.+.|++++|+.+|+.+....   |+..++..++.+|.+.|++++|.++|+.+...  ..+..++..++.+|.
T Consensus        87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~  161 (597)
T 2xpi_A           87 LRLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLV  161 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHH
Confidence            3455667778899999999999998544   67788888999999999999999999988644  346778888888888


Q ss_pred             hcCChHHHHHHHHHhhh-c--------------CCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCC----------
Q 015329          127 KAGMIKHAMDTFYDMHL-Y--------------GCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFH----------  181 (409)
Q Consensus       127 ~~~~~~~a~~~~~~m~~-~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------  181 (409)
                      +.|++++|.++|+++.. .              |.+.+..+|+.++.+|.+.|++++|..+|+++.....          
T Consensus       162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  241 (597)
T 2xpi_A          162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV  241 (597)
T ss_dssp             HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence            88888888888885322 1              2234577888888888888888888887766533211          


Q ss_pred             -----------------------------------------------------------CCcCHHHHHHHHHHHHhcCCh
Q 015329          182 -----------------------------------------------------------IQFDIFSFNIVIKAFCEMGIL  202 (409)
Q Consensus       182 -----------------------------------------------------------~~~~~~~~~~ll~~~~~~g~~  202 (409)
                                                                                 .+++..+++.++.+|.+.|++
T Consensus       242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  321 (597)
T 2xpi_A          242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF  321 (597)
T ss_dssp             HTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCH
T ss_pred             HhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCH
Confidence                                                                       125777888888888999999


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 015329          203 DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLM  282 (409)
Q Consensus       203 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  282 (409)
                      ++|.++|+++.+.+.. +..++..++.++.+.|++++|..+++.+.+.. +.+..+|+.++..|.+.|++++|.++|+++
T Consensus       322 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  399 (597)
T 2xpi_A          322 IDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKS  399 (597)
T ss_dssp             HHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            9999999988876543 77788888888889999999999998888653 567889999999999999999999999999


Q ss_pred             HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH
Q 015329          283 QRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVD  362 (409)
Q Consensus       283 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  362 (409)
                      .+... .+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..
T Consensus       400 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~  476 (597)
T 2xpi_A          400 STMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPL  476 (597)
T ss_dssp             HHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred             HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence            87642 3678999999999999999999999999987743 377889999999999999999999999998764 55788


Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhcCC----CCC--chhHHHHHHhhcc
Q 015329          363 TISALLEGLKKNNQPCKANTIMALVQRRVP----HFS--SNQLSAFKSILSK  408 (409)
Q Consensus       363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~--~~~~~~l~~~~~k  408 (409)
                      +|..+...|.+.|++++|.++++++.+..+    .+.  ...+..+..+|.+
T Consensus       477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~  528 (597)
T 2xpi_A          477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK  528 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999987632    222  4566777776654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=1.1e-25  Score=203.28  Aligned_cols=341  Identities=10%  Similarity=-0.008  Sum_probs=290.3

Q ss_pred             hhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChH
Q 015329           53 KLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIK  132 (409)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  132 (409)
                      .+...+++++|...++...+..  +.+..+|..+...+.+.|++++|...|+++....+. ....+..+..++.+.|+++
T Consensus        42 ~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~  118 (388)
T 1w3b_A           42 IHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDME  118 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHH
Confidence            3456799999999999988776  467788999999999999999999999999876443 5667888999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015329          133 HAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEM  212 (409)
Q Consensus       133 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m  212 (409)
                      +|.+.|+++.+.+ +.+...+..+...+...|++++|..+|+++....  +.+..+|..+...+.+.|++++|...|+++
T Consensus       119 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  195 (388)
T 1w3b_A          119 GAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKA  195 (388)
T ss_dssp             HHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999998764 3445677888889999999999999998776542  235778999999999999999999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHH
Q 015329          213 QKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEV  292 (409)
Q Consensus       213 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~  292 (409)
                      .+.+.. +...|..+...+...|++++|...+++..+.. +.+..++..+..+|.+.|++++|...|+++.+.+.. +..
T Consensus       196 l~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~  272 (388)
T 1w3b_A          196 VTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPD  272 (388)
T ss_dssp             HHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHH
T ss_pred             HhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHH
Confidence            986543 67888999999999999999999999998864 446788999999999999999999999999987533 577


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329          293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLK  372 (409)
Q Consensus       293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~  372 (409)
                      +|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+..++.
T Consensus       273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  350 (388)
T 1w3b_A          273 AYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQ  350 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence            89999999999999999999999998864 3478899999999999999999999999998764 566889999999999


Q ss_pred             hCCChHHHHHHHHHHHhcCCCCCchhHHHHHHh
Q 015329          373 KNNQPCKANTIMALVQRRVPHFSSNQLSAFKSI  405 (409)
Q Consensus       373 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  405 (409)
                      +.|++++|.+.++++.+..|... ..+..+-..
T Consensus       351 ~~g~~~~A~~~~~~a~~~~p~~~-~a~~~lg~~  382 (388)
T 1w3b_A          351 QQGKLQEALMHYKEAIRISPTFA-DAYSNMGNT  382 (388)
T ss_dssp             TTTCCHHHHHHHHHHHTTCTTCH-HHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCH-HHHHhHHHH
Confidence            99999999999999998876643 334444333

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=2.3e-25  Score=201.06  Aligned_cols=343  Identities=12%  Similarity=0.034  Sum_probs=293.9

Q ss_pred             HhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCh
Q 015329           52 VKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMI  131 (409)
Q Consensus        52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  131 (409)
                      ..+.+.|++++|++.++.+.+..  +.+...+..+...+...|++++|...++...+..+ .+...+..+...|.+.|++
T Consensus         7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence            34567899999999999998776  34455677777888999999999999999887644 3677888999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 015329          132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEMGILDKAYLVMV  210 (409)
Q Consensus       132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~  210 (409)
                      ++|++.|+++.+.. +.+..+|..+..++...|+++.|...+++....   .| +...+..+...+...|++++|.+.|+
T Consensus        84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  159 (388)
T 1w3b_A           84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            99999999998764 445668999999999999999999999877654   34 35567888899999999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC
Q 015329          211 EMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD  290 (409)
Q Consensus       211 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~  290 (409)
                      ++.+.... +..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...+++..+.... +
T Consensus       160 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~  236 (388)
T 1w3b_A          160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H  236 (388)
T ss_dssp             HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred             HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence            99986543 67899999999999999999999999999875 456788999999999999999999999999887432 6


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329          291 EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEG  370 (409)
Q Consensus       291 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~  370 (409)
                      ..++..+...|.+.|++++|.+.|+++.+.+.. +..+|..+..++.+.|++++|.+.|+++.+.. +.+..++..+...
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  314 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI  314 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence            788999999999999999999999999987433 67889999999999999999999999998864 6788999999999


Q ss_pred             HHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhhc
Q 015329          371 LKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILS  407 (409)
Q Consensus       371 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  407 (409)
                      +.+.|++++|.+.++++.+..|+. ...+..+..+|.
T Consensus       315 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~  350 (388)
T 1w3b_A          315 KREQGNIEEAVRLYRKALEVFPEF-AAAHSNLASVLQ  350 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHH
Confidence            999999999999999999887654 444555555554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=3e-23  Score=190.97  Aligned_cols=306  Identities=10%  Similarity=0.002  Sum_probs=219.8

Q ss_pred             CccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHH
Q 015329           78 ENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAAL  157 (409)
Q Consensus        78 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  157 (409)
                      .+...+..+...+.+.|++++|..+|+.+....+. +...+..+..+|...|++++|.+.|+++.+.+ +.+..++..+.
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  101 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG  101 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence            45556666777777777777777777777654332 45666667777777777777777777776654 44566777777


Q ss_pred             HHHHccCCHHHHHHHHHhcCccCCCCcC-H---HHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 015329          158 KVLTESRDLKAIQAFLMEVPEKFHIQFD-I---FSFNIV------------IKAFCEMGILDKAYLVMVEMQKLGVKPDV  221 (409)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~~~~  221 (409)
                      .+|...|+++.|...|+++...   .|+ .   ..+..+            ...+...|++++|...|+++.+.... +.
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~  177 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DA  177 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence            7777777777777777665433   233 2   344444            34477888888888888888775433 67


Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHH----
Q 015329          222 ITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLV----  297 (409)
Q Consensus       222 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l----  297 (409)
                      .++..+..+|.+.|++++|..+|+.+.+.. +.+..++..+...|...|++++|...|+++.+.... +...+..+    
T Consensus       178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~  255 (450)
T 2y4t_A          178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK  255 (450)
T ss_dssp             HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence            778888888888888888888888887653 456778888888888888888888888888765322 34444443    


Q ss_pred             --------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 015329          298 --------IKGFCRSGHLDMAKKVYSAMLGRRLMPN-----RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTI  364 (409)
Q Consensus       298 --------i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  364 (409)
                              ...|.+.|++++|...|+.+.+.  .|+     ...|..+..++.+.|++++|...++++.+.. +.+...|
T Consensus       256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~  332 (450)
T 2y4t_A          256 KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL  332 (450)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence                    67788888888888888888765  333     3467777888888888888888888877653 4467788


Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          365 SALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       365 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      ..+..+|...|++++|.+.++++.+..|..
T Consensus       333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  362 (450)
T 2y4t_A          333 KDRAEAYLIEEMYDEAIQDYETAQEHNEND  362 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence            888888888888888888888888877654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.93  E-value=1.3e-22  Score=186.59  Aligned_cols=335  Identities=14%  Similarity=0.035  Sum_probs=271.5

Q ss_pred             HHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhc
Q 015329           49 PALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKA  128 (409)
Q Consensus        49 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  128 (409)
                      .....+.+.|++++|+++|+.+.+..  +.+..++..+..++...|++++|...|+.+....+. ....+..+..+|.+.
T Consensus        31 ~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~  107 (450)
T 2y4t_A           31 ELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLLLKQ  107 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHc
Confidence            33445678899999999999998775  456788999999999999999999999999877544 577888899999999


Q ss_pred             CChHHHHHHHHHhhhcCCCCCH---HhHHHH------------HHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHH
Q 015329          129 GMIKHAMDTFYDMHLYGCKRTV---KSLNAA------------LKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVI  193 (409)
Q Consensus       129 ~~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll  193 (409)
                      |++++|.+.|+++.+.+ +.+.   ..+..+            ...+...|+++.|..+++++....  +.+...+..+.
T Consensus       108 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~  184 (450)
T 2y4t_A          108 GKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRA  184 (450)
T ss_dssp             TCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence            99999999999998764 2233   555555            444889999999999998876542  34678899999


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHH-----------
Q 015329          194 KAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVR-----------  262 (409)
Q Consensus       194 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----------  262 (409)
                      ..|.+.|++++|.++|+++.+... .+..+|..+...+...|++++|...|+.+.+.. +.+...+..+           
T Consensus       185 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~  262 (450)
T 2y4t_A          185 ECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIE  262 (450)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987643 378899999999999999999999999998763 3344445444           


Q ss_pred             -HHHHHhcCCHhHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329          263 -IQHLVNKRRSWQANKLMGLMQRFGIEPD----EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLC  337 (409)
Q Consensus       263 -l~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  337 (409)
                       ...+.+.|++++|...|+++.+.... +    ...+..+...+.+.|++++|...++.+.+.. +.+...|..+..+|.
T Consensus       263 ~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~  340 (450)
T 2y4t_A          263 SAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYL  340 (450)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence             78999999999999999999886422 2    4578889999999999999999999998763 236889999999999


Q ss_pred             HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHhCC-----ChHHHHHHHHH-HHhcCCCC
Q 015329          338 QEGDFNLAYIMCKDSMKKNWVPSVDTISALLEG------------LKKNN-----QPCKANTIMAL-VQRRVPHF  394 (409)
Q Consensus       338 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~~~~~~~  394 (409)
                      ..|++++|...++++++.. +-+...+..+..+            |...|     +.+++.+.+++ ..+..|+.
T Consensus       341 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~  414 (450)
T 2y4t_A          341 IEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN  414 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred             HhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999998863 3456666666532            43444     56778888886 55565553

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.3e-21  Score=182.94  Aligned_cols=236  Identities=11%  Similarity=-0.044  Sum_probs=131.8

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329          152 SLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAF  231 (409)
Q Consensus       152 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~  231 (409)
                      ++..+...+...|+++.|..++++....   .|+...+..+...|...|++++|...|+++.+.... +..++..+...+
T Consensus       239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~  314 (514)
T 2gw1_A          239 SLEHTGIFKFLKNDPLGAHEDIKKAIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMN  314 (514)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHH
Confidence            4444555555555555555555444332   122444555555555555555555555555544322 444555555556


Q ss_pred             HHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 015329          232 YKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAK  311 (409)
Q Consensus       232 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~  311 (409)
                      ...|++++|...++...+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...|...|++++|.
T Consensus       315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~  392 (514)
T 2gw1_A          315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKAL  392 (514)
T ss_dssp             HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHH
Confidence            66666666666666655543 234455555666666666666666666666554321 3455556666666666666666


Q ss_pred             HHHHHHHhCCCC-CC----HHHHHHHHHHHHH---cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 015329          312 KVYSAMLGRRLM-PN----RKIYQTMIHYLCQ---EGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTI  383 (409)
Q Consensus       312 ~~~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  383 (409)
                      ..++.+.+.... ++    ...+..+...+..   .|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.
T Consensus       393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~  471 (514)
T 2gw1_A          393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITL  471 (514)
T ss_dssp             HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHH
Confidence            666665543111 11    2356666666666   666666666666665543 34555666666666666666666666


Q ss_pred             HHHHHhcCCCC
Q 015329          384 MALVQRRVPHF  394 (409)
Q Consensus       384 ~~~~~~~~~~~  394 (409)
                      ++++.+..|..
T Consensus       472 ~~~a~~~~~~~  482 (514)
T 2gw1_A          472 FEESADLARTM  482 (514)
T ss_dssp             HHHHHHHCSSH
T ss_pred             HHHHHHhcccc
Confidence            66666665543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.90  E-value=5.5e-20  Score=163.57  Aligned_cols=305  Identities=9%  Similarity=-0.012  Sum_probs=224.8

Q ss_pred             chHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHH
Q 015329           81 YAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVL  160 (409)
Q Consensus        81 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  160 (409)
                      ..+..+...+...|++++|...|+.+....+. +...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence            44555666667777777777777776654332 45566666777777777777777777766553 33556667777777


Q ss_pred             HccCCHHHHHHHHHhcCccCCCCc----CHHHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 015329          161 TESRDLKAIQAFLMEVPEKFHIQF----DIFSFNIV------------IKAFCEMGILDKAYLVMVEMQKLGVKPDVITY  224 (409)
Q Consensus       161 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~  224 (409)
                      ...|+++.|...+++....   .|    +...+..+            ...+...|++++|.+.|+++.+.... +...+
T Consensus        82 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~  157 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELR  157 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred             HHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHH
Confidence            7777777777777655432   23    23333333            57788899999999999998876543 67888


Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHH---------
Q 015329          225 TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYN---------  295 (409)
Q Consensus       225 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~---------  295 (409)
                      ..+...+...|++++|...++...+.. +.+..++..+...+...|++++|...+++..+.... +...+.         
T Consensus       158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~  235 (359)
T 3ieg_A          158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN  235 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHH
Confidence            888889999999999999999988764 557788888889999999999999999988876432 333332         


Q ss_pred             ---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329          296 ---LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR----KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALL  368 (409)
Q Consensus       296 ---~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~  368 (409)
                         .+...+.+.|++++|...++++.+.... +.    ..+..+..++...|++++|...+++..+.. +.+..++..+.
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~  313 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA  313 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence               2356688899999999999998876322 23    234557788889999999999999988764 55788899999


Q ss_pred             HHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          369 EGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       369 ~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      ..+...|++++|.+.++++.+..|...
T Consensus       314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~  340 (359)
T 3ieg_A          314 EAYLIEEMYDEAIQDYEAAQEHNENDQ  340 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            999999999999999999998886653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.89  E-value=3.1e-20  Score=174.74  Aligned_cols=332  Identities=8%  Similarity=-0.018  Sum_probs=232.1

Q ss_pred             hhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChH
Q 015329           53 KLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIK  132 (409)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  132 (409)
                      .+.+.|++++|++.|+.+.+.+  +.+..++..+..++.+.|++++|.+.++.+....+. +...+..+..++...|+++
T Consensus        34 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~  110 (537)
T 3fp2_A           34 HFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANESLGNFT  110 (537)
T ss_dssp             HHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHcCCHH
Confidence            3556677777777777777665  345566777777777777777777777777665433 4556666777777777777


Q ss_pred             HHHHHHHHh-----------------------------------------------------------------------
Q 015329          133 HAMDTFYDM-----------------------------------------------------------------------  141 (409)
Q Consensus       133 ~a~~~~~~m-----------------------------------------------------------------------  141 (409)
                      +|.+.|+.+                                                                       
T Consensus       111 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (537)
T 3fp2_A          111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD  190 (537)
T ss_dssp             HHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence            777666422                                                                       


Q ss_pred             --------------------------------------hhcCCCCC--------HHhHHHHHHHHHccCCHHHHHHHHHh
Q 015329          142 --------------------------------------HLYGCKRT--------VKSLNAALKVLTESRDLKAIQAFLME  175 (409)
Q Consensus       142 --------------------------------------~~~~~~~~--------~~~~~~ll~~~~~~~~~~~a~~~~~~  175 (409)
                                                            .+.  .|+        ..++..+...+...|+++.|...+++
T Consensus       191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~  268 (537)
T 3fp2_A          191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE  268 (537)
T ss_dssp             SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence                                                  221  122        12344555666677777777777766


Q ss_pred             cCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC
Q 015329          176 VPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN  255 (409)
Q Consensus       176 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~  255 (409)
                      ....   .|+...+..+...+...|++++|.+.|+++.+.... +..+|..+...+...|++++|...++...+.. +.+
T Consensus       269 ~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~  343 (537)
T 3fp2_A          269 SINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PEN  343 (537)
T ss_dssp             HHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCC
Confidence            6544   445667777777888888888888888887765433 56777778888888888888888888887754 345


Q ss_pred             HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHH
Q 015329          256 LATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR-----LMPNRKIYQ  330 (409)
Q Consensus       256 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~  330 (409)
                      ...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...|+.+.+..     .......+.
T Consensus       344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  422 (537)
T 3fp2_A          344 VYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI  422 (537)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence            66777788888888888888888888877642 256677778888888888888888888876542     111223344


Q ss_pred             HHHHHHHHc----------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329          331 TMIHYLCQE----------GDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSS  396 (409)
Q Consensus       331 ~li~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  396 (409)
                      .....+...          |++++|...|++..+.. +.+...+..+..+|.+.|++++|.+.++++.+..|....
T Consensus       423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  497 (537)
T 3fp2_A          423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE  497 (537)
T ss_dssp             HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred             HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence            455666666          88888888888887754 556788888889999999999999999999888776543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.88  E-value=3.2e-19  Score=158.60  Aligned_cols=310  Identities=14%  Similarity=0.061  Sum_probs=252.7

Q ss_pred             HhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCh
Q 015329           52 VKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMI  131 (409)
Q Consensus        52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  131 (409)
                      ..+...|++++|++.|+.+.+..  +.+..++..+...+...|++++|...++.+....+. ....+..+...+...|++
T Consensus        11 ~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~   87 (359)
T 3ieg_A           11 KKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLKQGKL   87 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHcCCh
Confidence            34667899999999999998876  456678889999999999999999999999876543 567888899999999999


Q ss_pred             HHHHHHHHHhhhcCCC---CCHHhHHHH------------HHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHH
Q 015329          132 KHAMDTFYDMHLYGCK---RTVKSLNAA------------LKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAF  196 (409)
Q Consensus       132 ~~a~~~~~~m~~~~~~---~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~  196 (409)
                      ++|.+.|++..+.. +   .+...+..+            ...+...|+++.|..++++.....  +.+...+..+...+
T Consensus        88 ~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~  164 (359)
T 3ieg_A           88 DEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELRELRAECF  164 (359)
T ss_dssp             HHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHHHHHHHH
Confidence            99999999998764 2   244455444            578899999999999998876552  34677899999999


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHH------------HHHH
Q 015329          197 CEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFN------------VRIQ  264 (409)
Q Consensus       197 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~------------~ll~  264 (409)
                      ...|++++|...+++..+.... +..++..+...+...|++++|...++...+.. +.+...+.            .+..
T Consensus       165 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~  242 (359)
T 3ieg_A          165 IKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAE  242 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987543 78899999999999999999999999998864 33333333            2366


Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 015329          265 HLVNKRRSWQANKLMGLMQRFGIEPDE----VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG  340 (409)
Q Consensus       265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  340 (409)
                      .+.+.|++++|...++++.+.... +.    ..+..+...+...|++++|...++...+... .+..++..+...+...|
T Consensus       243 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g  320 (359)
T 3ieg_A          243 ELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEE  320 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcC
Confidence            788999999999999999887533 33    2355677889999999999999999988632 27889999999999999


Q ss_pred             CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329          341 DFNLAYIMCKDSMKKNWVPSVDTISALLEGLK  372 (409)
Q Consensus       341 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~  372 (409)
                      ++++|.+.|++..+.. +-+...+..+..+..
T Consensus       321 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          321 MYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR  351 (359)
T ss_dssp             CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence            9999999999998864 344556666555543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.87  E-value=3.7e-19  Score=156.37  Aligned_cols=293  Identities=9%  Similarity=-0.119  Sum_probs=207.7

Q ss_pred             CCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHH
Q 015329           77 IENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAA  156 (409)
Q Consensus        77 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  156 (409)
                      +.+...+..+...+...|++++|.++++.+....+. +...+..++..+...|++++|..+++++.+.. +.+..+|..+
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   96 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV   96 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence            345566667777777778888888888877765433 34455556677777888888888888877654 4456677777


Q ss_pred             HHHHHccC-CHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 015329          157 LKVLTESR-DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDN  235 (409)
Q Consensus       157 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~  235 (409)
                      ...+...| +++.|...+++.....  +.+...|..+...+...|++++|.+.|++..+.... +...+..+...+...|
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence            77777777 7777777776654332  224566777888888888888888888888775433 4556666777888888


Q ss_pred             ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC--------CCcCHHHHHHHHHHHHhcCCH
Q 015329          236 RPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFG--------IEPDEVTYNLVIKGFCRSGHL  307 (409)
Q Consensus       236 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~  307 (409)
                      ++++|...++...+.. +.+...+..+...+...|++++|...+++..+..        ...+...+..+...|...|++
T Consensus       174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            8888888888887763 4466777788888888888888888888776532        122356777788888888888


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhCCCh
Q 015329          308 DMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGL-KKNNQP  377 (409)
Q Consensus       308 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~~  377 (409)
                      ++|...+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..++ ...|+.
T Consensus       253 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          253 AEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence            8888888887765332 56677788888888888888888888777654 44666777777766 345543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.87  E-value=3.4e-19  Score=156.61  Aligned_cols=285  Identities=8%  Similarity=-0.071  Sum_probs=241.1

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHH
Q 015329          114 REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVI  193 (409)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll  193 (409)
                      +..++..+...+...|++++|.++|+++.+.. +.+...+..++..+...|+++.|..+++++....  +.+...+..+.
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~   97 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVG   97 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence            55667778888999999999999999998775 5566778888899999999999999998876652  23567888999


Q ss_pred             HHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 015329          194 KAFCEMG-ILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRS  272 (409)
Q Consensus       194 ~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  272 (409)
                      ..+...| ++++|.+.|++..+.... +...|..+...+...|++++|...++...+.. +.+...+..+...|...|++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence            9999999 999999999999987543 67789999999999999999999999999874 44567778899999999999


Q ss_pred             hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCCHhH
Q 015329          273 WQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR--------LMPNRKIYQTMIHYLCQEGDFNL  344 (409)
Q Consensus       273 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~  344 (409)
                      ++|...+++..+... .+...+..+...+...|++++|...+++..+..        ...+..++..+..++...|++++
T Consensus       176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            999999999988753 367889999999999999999999999987641        13346789999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhh
Q 015329          345 AYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSIL  406 (409)
Q Consensus       345 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  406 (409)
                      |...+++..+.. +.+...+..+..++.+.|++++|.+.++++.+..|.. ...+..+..+|
T Consensus       255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~  314 (330)
T 3hym_B          255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD-TFSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc-hHHHHHHHHHH
Confidence            999999998764 5577889999999999999999999999999888655 33444444444

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.6e-19  Score=168.81  Aligned_cols=343  Identities=9%  Similarity=-0.003  Sum_probs=280.5

Q ss_pred             hhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChH
Q 015329           53 KLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIK  132 (409)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  132 (409)
                      .+...|++++|++.|+.+.+.+   |+..+|..+..++.+.|++++|.+.++.+....+. +...+..+..+|.+.|+++
T Consensus        15 ~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~   90 (514)
T 2gw1_A           15 QFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEGLGKFA   90 (514)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHhhHH
Confidence            4567899999999999999887   68899999999999999999999999999877543 5678888999999999999


Q ss_pred             HHHHHHHHhhhcCCCCC---------------------------------------------------------------
Q 015329          133 HAMDTFYDMHLYGCKRT---------------------------------------------------------------  149 (409)
Q Consensus       133 ~a~~~~~~m~~~~~~~~---------------------------------------------------------------  149 (409)
                      +|.+.|+++...+ +++                                                               
T Consensus        91 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
T 2gw1_A           91 DAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG  169 (514)
T ss_dssp             HHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred             HHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence            9999999997765 211                                                               


Q ss_pred             ----------------HHhHHHHHHHHHc---cCCHHHHHHHHHhcCc-----cCCC-------CcCHHHHHHHHHHHHh
Q 015329          150 ----------------VKSLNAALKVLTE---SRDLKAIQAFLMEVPE-----KFHI-------QFDIFSFNIVIKAFCE  198 (409)
Q Consensus       150 ----------------~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~ll~~~~~  198 (409)
                                      ...+......+..   .|+++.|..++++...     ....       +.+..++..+...+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (514)
T 2gw1_A          170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL  249 (514)
T ss_dssp             TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence                            2222333333333   7889999999987755     1011       2245678889999999


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 015329          199 MGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKL  278 (409)
Q Consensus       199 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  278 (409)
                      .|++++|...|+++.+.+..  ..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...
T Consensus       250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  326 (514)
T 2gw1_A          250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKD  326 (514)
T ss_dssp             SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999986543  8888999999999999999999999998864 45778899999999999999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-
Q 015329          279 MGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNW-  357 (409)
Q Consensus       279 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-  357 (409)
                      ++++.+.... +...+..+...|...|++++|...++.+.+.... +...+..+...+...|++++|...++++.+..- 
T Consensus       327 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  404 (514)
T 2gw1_A          327 FDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENK  404 (514)
T ss_dssp             HHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            9999887543 5678888999999999999999999999876322 567889999999999999999999999876421 


Q ss_pred             CCC----HHHHHHHHHHHHh---CCChHHHHHHHHHHHhcCCCCCchhHHHHHHhh
Q 015329          358 VPS----VDTISALLEGLKK---NNQPCKANTIMALVQRRVPHFSSNQLSAFKSIL  406 (409)
Q Consensus       358 ~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  406 (409)
                      .++    ...+..+...+..   .|++++|.+.++++.+..|.. ...+..+..+|
T Consensus       405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~  459 (514)
T 2gw1_A          405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS-EQAKIGLAQMK  459 (514)
T ss_dssp             SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
Confidence            112    4488899999999   999999999999999887654 33444444444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.86  E-value=3.2e-19  Score=159.50  Aligned_cols=290  Identities=9%  Similarity=-0.068  Sum_probs=215.9

Q ss_pred             cCCCchhHHH-HHHHhhhCCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHH
Q 015329           92 GARRFDYIEH-LLEHQKSLPQGR---REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLK  167 (409)
Q Consensus        92 ~~~~~~~a~~-~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~  167 (409)
                      ..|++++|.+ .+++.....+..   +...+..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|+++
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  115 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL  115 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence            4477788887 777655433221   23445567788888888888888888887764 456677888888888888888


Q ss_pred             HHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHH
Q 015329          168 AIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTT---------------LISAFY  232 (409)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---------------ll~~~~  232 (409)
                      .|...+++.....  +.+..++..+...|...|++++|.+.|+++.+.... +...+..               .+..+.
T Consensus       116 ~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (368)
T 1fch_A          116 LAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL  192 (368)
T ss_dssp             HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred             HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence            8888887665442  335677888888888889999999988888876433 2222221               233344


Q ss_pred             HcCChhhHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 015329          233 KDNRPEIGNGLWNLMVCKGCFP-NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAK  311 (409)
Q Consensus       233 ~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~  311 (409)
                      ..|++++|...++.+.+..... +..++..+...|...|++++|...++++.+... .+...+..+...|...|++++|.
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHH
Confidence            8899999999999998864211 578889999999999999999999999987742 36788899999999999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhCCChHHH
Q 015329          312 KVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP-----------SVDTISALLEGLKKNNQPCKA  380 (409)
Q Consensus       312 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a  380 (409)
                      ..|+++.+... .+...+..+..+|.+.|++++|...|+++++.. +.           ...+|..+..+|...|+.++|
T Consensus       272 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  349 (368)
T 1fch_A          272 AAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  349 (368)
T ss_dssp             HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence            99999887642 367889999999999999999999999887642 11           268899999999999999999


Q ss_pred             HHHHHHHH
Q 015329          381 NTIMALVQ  388 (409)
Q Consensus       381 ~~~~~~~~  388 (409)
                      ..++++..
T Consensus       350 ~~~~~~~l  357 (368)
T 1fch_A          350 GAADARDL  357 (368)
T ss_dssp             HHHHTTCH
T ss_pred             HHhHHHHH
Confidence            98877543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.85  E-value=4.1e-19  Score=158.79  Aligned_cols=290  Identities=9%  Similarity=-0.082  Sum_probs=230.6

Q ss_pred             hcCChHHHHH-HHHHhhcCCCCCC--ccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChH
Q 015329           56 AERDPEKLFQ-LFKANAHNRIVIE--NKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIK  132 (409)
Q Consensus        56 ~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  132 (409)
                      -.++++.|++ .|+......+-.|  +...+..+...+.+.|++++|...++.+....+. +...+..+..+|...|+++
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~  115 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQEL  115 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHH
Confidence            3478888998 8887765542222  4567888999999999999999999999987543 6778888999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHH---------------HHHHHH
Q 015329          133 HAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNI---------------VIKAFC  197 (409)
Q Consensus       133 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~  197 (409)
                      +|.+.|+++.+.+ +.+..++..+...+...|+++.|...+++......-.+  ..+..               .+..+.
T Consensus       116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (368)
T 1fch_A          116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA--HLVTPAEEGAGGAGLGPSKRILGSLL  192 (368)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG--GGCC---------------CTTHHHH
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHHhhhhcccHHHHHHHHHh
Confidence            9999999998875 55788999999999999999999999987755432211  12211               233344


Q ss_pred             hcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 015329          198 EMGILDKAYLVMVEMQKLGVKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQAN  276 (409)
Q Consensus       198 ~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  276 (409)
                      ..|++++|...|+++.+..... +..++..+...+...|++++|...++...+.. +.+..++..+...+...|++++|.
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence            8999999999999999864322 57889999999999999999999999998864 456789999999999999999999


Q ss_pred             HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHHcCCHhHHH
Q 015329          277 KLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP----------NRKIYQTMIHYLCQEGDFNLAY  346 (409)
Q Consensus       277 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~a~  346 (409)
                      ..++++.+... .+...+..+...|.+.|++++|...|+++.+.....          ...+|..+..+|...|++++|.
T Consensus       272 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  350 (368)
T 1fch_A          272 AAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  350 (368)
T ss_dssp             HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence            99999988753 367889999999999999999999999987652211          2688999999999999999999


Q ss_pred             HHHHH
Q 015329          347 IMCKD  351 (409)
Q Consensus       347 ~~~~~  351 (409)
                      .++++
T Consensus       351 ~~~~~  355 (368)
T 1fch_A          351 AADAR  355 (368)
T ss_dssp             HHHTT
T ss_pred             HhHHH
Confidence            88764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.84  E-value=7.5e-18  Score=158.43  Aligned_cols=304  Identities=12%  Similarity=0.018  Sum_probs=183.1

Q ss_pred             cchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHH
Q 015329           80 KYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKV  159 (409)
Q Consensus        80 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  159 (409)
                      ...+..+...+.+.|++++|...|+++....+. +...+..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  102 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            355777889999999999999999999877543 67888889999999999999999999998876 5577889999999


Q ss_pred             HHccCCHHHHHHHHHhcCccCCC-----------------------------------CcCHH-----------------
Q 015329          160 LTESRDLKAIQAFLMEVPEKFHI-----------------------------------QFDIF-----------------  187 (409)
Q Consensus       160 ~~~~~~~~~a~~~~~~~~~~~~~-----------------------------------~~~~~-----------------  187 (409)
                      +...|+++.|...++.+....+.                                   .|+..                 
T Consensus       103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (537)
T 3fp2_A          103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS  182 (537)
T ss_dssp             HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence            99999999998887433111000                                   00000                 


Q ss_pred             -------------HHHHHHHHHH--------hcCChhHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHcCChhh
Q 015329          188 -------------SFNIVIKAFC--------EMGILDKAYLVMVEMQKLGVKPD-------VITYTTLISAFYKDNRPEI  239 (409)
Q Consensus       188 -------------~~~~ll~~~~--------~~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~ll~~~~~~~~~~~  239 (409)
                                   ....+...+.        ..|++++|..+|+++.+.... +       ..++..+...+...|++++
T Consensus       183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~  261 (537)
T 3fp2_A          183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLD  261 (537)
T ss_dssp             SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHH
Confidence                         0111111110        113455566666665554322 1       1234444455555566666


Q ss_pred             HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329          240 GNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG  319 (409)
Q Consensus       240 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  319 (409)
                      |...++...+.  .|+...+..+...+...|++++|...++++.+.... +..++..+...|...|++++|...++++.+
T Consensus       262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  338 (537)
T 3fp2_A          262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQS  338 (537)
T ss_dssp             HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            66666666554  233555555555555666666666666665554322 445555555566666666666666665555


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329          320 RRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV  391 (409)
Q Consensus       320 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  391 (409)
                      .... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus       339 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          339 LNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             HCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence            4222 34455555556666666666666666555543 3344455555566666666666666665555443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.83  E-value=4.9e-20  Score=175.11  Aligned_cols=114  Identities=10%  Similarity=0.108  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 015329          222 ITYTTLISAFYKDNRPEIGNGLWNLMV---CKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVI  298 (409)
Q Consensus       222 ~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li  298 (409)
                      .||+++|++||+.|++++|.++|+.|.   ..|+.||..|||++|.+||+.|++++|.++|++|.+.|+.||..|||+||
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            345555555555555555555554433   22444555555555555555555555555555555555555555555555


Q ss_pred             HHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329          299 KGFCRSGHL-DMAKKVYSAMLGRRLMPNRKIYQTMIHY  335 (409)
Q Consensus       299 ~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~  335 (409)
                      .++++.|+. ++|.++|++|.+.|+.||..+|++++.+
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~  245 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE  245 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence            555554442 3444555555555555555555544443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.82  E-value=8.4e-19  Score=156.67  Aligned_cols=267  Identities=10%  Similarity=-0.111  Sum_probs=206.9

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHH
Q 015329          115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIK  194 (409)
Q Consensus       115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~  194 (409)
                      ...+..+...+.+.|++++|++.|+++.+.. +.+..+|..+...+...|+++.|...|++.....  +.+..++..+..
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~  141 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV  141 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence            3446667888888899999999999888765 5567788888889999999988888887765542  235778888999


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-CCHhhHHHHHH
Q 015329          195 AFCEMGILDKAYLVMVEMQKLGVK---------PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCF-PNLATFNVRIQ  264 (409)
Q Consensus       195 ~~~~~g~~~~a~~~~~~m~~~g~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~  264 (409)
                      .|...|++++|.+.|+++.+....         .....+..+...+...|++++|...++++.+.... .+..++..+..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            999999999999999998874311         01223344577888899999999999999886421 16788999999


Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 015329          265 HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL  344 (409)
Q Consensus       265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  344 (409)
                      .|...|++++|...|+++.+... .+..+|..+..+|...|++++|...|+++.+.... +..++..+..+|...|++++
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999988753 36889999999999999999999999999876322 57889999999999999999


Q ss_pred             HHHHHHHHHhCC---CC--------CCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 015329          345 AYIMCKDSMKKN---WV--------PSVDTISALLEGLKKNNQPCKANTIMAL  386 (409)
Q Consensus       345 a~~~~~~m~~~~---~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~  386 (409)
                      |...|+++++..   ..        .+...|..+..++...|+.+.+.++.++
T Consensus       300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            999999887642   01        1357889999999999999998887765

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.82  E-value=2.3e-18  Score=153.79  Aligned_cols=270  Identities=10%  Similarity=-0.087  Sum_probs=209.0

Q ss_pred             CccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHH
Q 015329           78 ENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAAL  157 (409)
Q Consensus        78 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  157 (409)
                      .+...+..+...+.+.|++++|...|+.+....+. +...+..+...|...|++++|++.|++..+.. +.+..+|..+.
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  140 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA  140 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence            34556778888888889999999999988876543 57777888888889999999999999888764 45677888888


Q ss_pred             HHHHccCCHHHHHHHHHhcCccCCCCc--------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 015329          158 KVLTESRDLKAIQAFLMEVPEKFHIQF--------DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-PDVITYTTLI  228 (409)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll  228 (409)
                      ..|...|+++.|...+++......-.+        ....+..+...+...|++++|.+.|+++.+.... .+..++..+.
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            899999999888888877654311000        1223445678899999999999999999986432 2678899999


Q ss_pred             HHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 015329          229 SAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLD  308 (409)
Q Consensus       229 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  308 (409)
                      ..+...|++++|...|++..+.. +.+..+|..+..+|...|++++|...|+++.+.... +..++..+..+|.+.|+++
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence            99999999999999999998864 557889999999999999999999999999887432 5888999999999999999


Q ss_pred             HHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329          309 MAKKVYSAMLGRRLM-----------PNRKIYQTMIHYLCQEGDFNLAYIMCKD  351 (409)
Q Consensus       309 ~a~~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~a~~~~~~  351 (409)
                      +|...|+++.+....           .+..+|..+..++...|+.+.+.++..+
T Consensus       299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            999999998765211           1357789999999999999998887664

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.82  E-value=3.2e-20  Score=176.38  Aligned_cols=119  Identities=10%  Similarity=0.059  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQK---LGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVR  262 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  262 (409)
                      ..+||++|++||+.|++++|.++|++|.+   .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||..||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            45677777777777777777777766553   366777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhcCCH-hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 015329          263 IQHLVNKRRS-WQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS  304 (409)
Q Consensus       263 l~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  304 (409)
                      |.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+.
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~  249 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA  249 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence            7777777663 56677777777777777777777666555443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.81  E-value=3.7e-17  Score=140.74  Aligned_cols=255  Identities=11%  Similarity=0.063  Sum_probs=158.8

Q ss_pred             HHHhcCChHHHHHHHHHhhhcCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCC
Q 015329          124 LYGKAGMIKHAMDTFYDMHLYGCKRT--VKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGI  201 (409)
Q Consensus       124 ~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  201 (409)
                      -....|++..|+..++.....  .|+  ......+.++|...|+++.|...++.     .-+|+..++..+...+...|+
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~   80 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSR   80 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCc
Confidence            344566777777766665433  222  23444556677777777666665422     124456666667777777777


Q ss_pred             hhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 015329          202 LDKAYLVMVEMQKLGVKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMG  280 (409)
Q Consensus       202 ~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  280 (409)
                      .++|++.++++...+..| +...+..+...+...|++++|++.++.      +.+...+..+...+.+.|++++|...++
T Consensus        81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~  154 (291)
T 3mkr_A           81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK  154 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            777777777776655434 344455555667777777777777765      3456666777777777777777777777


Q ss_pred             HHHHcCCCcCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 015329          281 LMQRFGIEPDEVTY---NLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNW  357 (409)
Q Consensus       281 ~~~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  357 (409)
                      ++.+..  |+....   ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++.++.. 
T Consensus       155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-  230 (291)
T 3mkr_A          155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-  230 (291)
T ss_dssp             HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            776653  332211   112233334467777777777776652 3366667777777777777777777777766654 


Q ss_pred             CCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHhcCCCCC
Q 015329          358 VPSVDTISALLEGLKKNNQPCK-ANTIMALVQRRVPHFS  395 (409)
Q Consensus       358 ~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~  395 (409)
                      +-+..++..++..+...|+.++ +.++++++.+..|+.+
T Consensus       231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~  269 (291)
T 3mkr_A          231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP  269 (291)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence            4466677777777777777654 4567777777766653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.81  E-value=8.2e-18  Score=147.56  Aligned_cols=154  Identities=10%  Similarity=-0.060  Sum_probs=79.8

Q ss_pred             HHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 015329          231 FYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMA  310 (409)
Q Consensus       231 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a  310 (409)
                      +...|++++|...++.+.+.. +.+...+..+...|...|++++|...++++.+... .+...+..+...+...|++++|
T Consensus       148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A  225 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEA  225 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHH
Confidence            334445555555555554432 22444555555555555555555555555544431 1344555555555555555555


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhCCChHH
Q 015329          311 KKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP-----------SVDTISALLEGLKKNNQPCK  379 (409)
Q Consensus       311 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~  379 (409)
                      ...++++.+... .+...+..+...|...|++++|.+.++++.+..-..           +...+..+..++.+.|+.++
T Consensus       226 ~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  304 (327)
T 3cv0_A          226 LDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL  304 (327)
T ss_dssp             HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence            555555554321 134555555555666666666666665554432000           24555556666666666666


Q ss_pred             HHHHHHHH
Q 015329          380 ANTIMALV  387 (409)
Q Consensus       380 a~~~~~~~  387 (409)
                      |.+++++.
T Consensus       305 A~~~~~~~  312 (327)
T 3cv0_A          305 VELTYAQN  312 (327)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHHHH
Confidence            66665543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.81  E-value=1.1e-17  Score=146.65  Aligned_cols=266  Identities=9%  Similarity=-0.054  Sum_probs=221.5

Q ss_pred             ccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHH
Q 015329           79 NKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALK  158 (409)
Q Consensus        79 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  158 (409)
                      +...+......+...|++++|..+++.+....+. +...+..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence            5566778889999999999999999999876543 66778889999999999999999999998875 557788999999


Q ss_pred             HHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHH--------------HH-HHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 015329          159 VLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIV--------------IK-AFCEMGILDKAYLVMVEMQKLGVKPDVIT  223 (409)
Q Consensus       159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~  223 (409)
                      .+...|+++.|...+++.......  +...+..+              .. .+...|++++|.+.++++.+.... +..+
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~  174 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQPQ--YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQL  174 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTT--TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHH
Confidence            999999999999999877654322  22233333              22 377889999999999999986543 7889


Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 015329          224 YTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCR  303 (409)
Q Consensus       224 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  303 (409)
                      +..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...|..
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence            9999999999999999999999998874 45678899999999999999999999999988753 367889999999999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329          304 SGHLDMAKKVYSAMLGRRLMP-----------NRKIYQTMIHYLCQEGDFNLAYIMCKD  351 (409)
Q Consensus       304 ~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~  351 (409)
                      .|++++|.+.++++.+.....           +...|..+..++...|++++|..++++
T Consensus       253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            999999999999988763221           467889999999999999999988764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.79  E-value=9.6e-17  Score=138.11  Aligned_cols=251  Identities=10%  Similarity=-0.020  Sum_probs=143.8

Q ss_pred             HhhhhcCChHHHHHHHHHhhcCCCCCCcc--chHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcC
Q 015329           52 VKLKAERDPEKLFQLFKANAHNRIVIENK--YAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAG  129 (409)
Q Consensus        52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  129 (409)
                      +...-.|+++.|++.++......   |+.  .....+..++...|+++.|...++.   . ..+....+..+...+...+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~---p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~   79 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSS---PERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS   79 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCS---HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHHHHHHHhcccCC---chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence            33445577777777776654433   332  2444556677777777776654433   1 2223445555666667777


Q ss_pred             ChHHHHHHHHHhhhcCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 015329          130 MIKHAMDTFYDMHLYGCKR-TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLV  208 (409)
Q Consensus       130 ~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~  208 (409)
                      +.++|++.++++...++.| +...+..+...+...|++++|...+++       +.+...+..++..|.+.|++++|.+.
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~  152 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKE  152 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            7777777777766655434 344455555666777777777777643       23555666666677777777777777


Q ss_pred             HHHHHhCCCCCCHHHH---HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329          209 MVEMQKLGVKPDVITY---TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       209 ~~~m~~~g~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  285 (409)
                      |+++.+..  |+....   ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++..+.
T Consensus       153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  229 (291)
T 3mkr_A          153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK  229 (291)
T ss_dssp             HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            77766543  332111   11222233345666666666666655 2445566666666666666666666666666555


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhC
Q 015329          286 GIEPDEVTYNLVIKGFCRSGHLDM-AKKVYSAMLGR  320 (409)
Q Consensus       286 ~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~  320 (409)
                      ... +..++..++..+...|+.++ +.++++++.+.
T Consensus       230 ~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          230 DSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             CTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            322 45555566666666666544 34555555544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=2.7e-18  Score=151.42  Aligned_cols=282  Identities=9%  Similarity=-0.002  Sum_probs=129.2

Q ss_pred             hcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 015329           56 AERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAM  135 (409)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  135 (409)
                      +.++.++|.++++.+       +++.+|..++.++.+.|++++|++.|.+.      .+...|..++..+...|++++|+
T Consensus        15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence            557789999999988       22348889999999999999999999653      35667888888999999999999


Q ss_pred             HHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 015329          136 DTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL  215 (409)
Q Consensus       136 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  215 (409)
                      ..++...+.  .++..+.+.++.+|.+.|+++++.++++        .|+..+|+.+...|...|++++|...|..+   
T Consensus        82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---  148 (449)
T 1b89_A           82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---  148 (449)
T ss_dssp             -----------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---
T ss_pred             HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence            977766653  4557788889999999999988888773        256669999999999999999999999876   


Q ss_pred             CCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHH
Q 015329          216 GVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYN  295 (409)
Q Consensus       216 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~  295 (409)
                            ..|..++.++.+.|++++|.+.+..+      .++.+|..++.+|...|+++.|......+     ..++.-..
T Consensus       149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~  211 (449)
T 1b89_A          149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE  211 (449)
T ss_dssp             ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred             ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence                  47889999999999999999999888      27889999999999999999996555442     22333455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHhHHHHHHHHHHhCCCCC------CHHHHHHH
Q 015329          296 LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE--GDFNLAYIMCKDSMKKNWVP------SVDTISAL  367 (409)
Q Consensus       296 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~------~~~~~~~l  367 (409)
                      .++..|.+.|.+++|..+++...... .-....|+.+.-+|++-  +++.+.++.|..  +-+++|      +...|.-+
T Consensus       212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~  288 (449)
T 1b89_A          212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAEL  288 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHH
Confidence            68889999999999999999888665 44677788887777764  344455554431  223333      34568888


Q ss_pred             HHHHHhCCChHHHHHH
Q 015329          368 LEGLKKNNQPCKANTI  383 (409)
Q Consensus       368 ~~~~~~~g~~~~a~~~  383 (409)
                      .-.|...++++.|...
T Consensus       289 ~~ly~~~~e~d~A~~t  304 (449)
T 1b89_A          289 VFLYDKYEEYDNAIIT  304 (449)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHhhchHHHHHHH
Confidence            8888888999888763

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.77  E-value=4.6e-14  Score=131.06  Aligned_cols=305  Identities=11%  Similarity=0.022  Sum_probs=187.6

Q ss_pred             cCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhc----CCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHh----c
Q 015329           57 ERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAG----ARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGK----A  128 (409)
Q Consensus        57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  128 (409)
                      .+++++|++.|+...+.+    +..++..+...+..    .+++++|.++|++....+   +...+..|...|..    .
T Consensus        56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~  128 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK  128 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred             CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence            577888888888877665    34566667777776    778888888888776553   44555556677776    6


Q ss_pred             CChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHh----cC
Q 015329          129 GMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE----SRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCE----MG  200 (409)
Q Consensus       129 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g  200 (409)
                      +++++|++.|++..+.|   +...+..+...|..    .++.+.|..+|+...+. +   +...+..+...|..    .+
T Consensus       129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~  201 (490)
T 2xm6_A          129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G---NVWSCNQLGYMYSRGLGVER  201 (490)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCC
T ss_pred             CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHhcCCCCCc
Confidence            77888888888777654   45566666666765    66777777777655443 2   55666666677766    67


Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCH
Q 015329          201 ILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK----DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN----KRRS  272 (409)
Q Consensus       201 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~  272 (409)
                      ++++|.++|++..+.|   +...+..+...|..    .+++++|...|+...+.|   +...+..+-..|..    .++.
T Consensus       202 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~  275 (490)
T 2xm6_A          202 NDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEP  275 (490)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCH
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCH
Confidence            7777777777776653   44555566666654    566777777777666554   34444555555555    5666


Q ss_pred             hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHhH
Q 015329          273 WQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS-----GHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG---DFNL  344 (409)
Q Consensus       273 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~  344 (409)
                      ++|...|++..+.|   +...+..+...|...     +++++|...|++..+.|   +...+..+...|...|   ++++
T Consensus       276 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~  349 (490)
T 2xm6_A          276 LKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKK  349 (490)
T ss_dssp             HHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHH
Confidence            66666666665543   333444455555554     56666666666655543   3344444555554433   4555


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhc
Q 015329          345 AYIMCKDSMKKNWVPSVDTISALLEGLKK----NNQPCKANTIMALVQRR  390 (409)
Q Consensus       345 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~  390 (409)
                      |.++|++..+.|   +...+..+...|..    .++.++|.+.+++..+.
T Consensus       350 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~  396 (490)
T 2xm6_A          350 AVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ  396 (490)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence            555555555542   44455555555555    45555555555555544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.76  E-value=4.7e-14  Score=131.00  Aligned_cols=308  Identities=11%  Similarity=-0.023  Sum_probs=259.4

Q ss_pred             cCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhc----CCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHh----c
Q 015329           57 ERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAG----ARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGK----A  128 (409)
Q Consensus        57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  128 (409)
                      .+++++|++.|+...+.+    +...+..+...+..    .+++++|.++|+.....+   +...+..|...|..    .
T Consensus        92 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~  164 (490)
T 2xm6_A           92 PQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVT  164 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred             CCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence            689999999999998776    45566777788877    789999999999988764   45666678888887    8


Q ss_pred             CChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHh----cC
Q 015329          129 GMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE----SRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCE----MG  200 (409)
Q Consensus       129 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g  200 (409)
                      +++++|++.|++..+.|   +...+..+...|..    .++.+.|..+++...+. +   +...+..+...|..    .+
T Consensus       165 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~g~~~  237 (490)
T 2xm6_A          165 RDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-G---DELGQLHLADMYYFGIGVTQ  237 (490)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCC
T ss_pred             CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCC
Confidence            89999999999998864   67788888888887    89999999999776543 2   56778888888886    88


Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc-----CC
Q 015329          201 ILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK----DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNK-----RR  271 (409)
Q Consensus       201 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----~~  271 (409)
                      ++++|.++|++..+.|   +...+..+...|..    .+++++|...|+...+.|   +...+..+...|...     ++
T Consensus       238 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~  311 (490)
T 2xm6_A          238 DYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN  311 (490)
T ss_dssp             CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence            9999999999998864   55677777788877    899999999999998875   566777788888887     89


Q ss_pred             HhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhH
Q 015329          272 SWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSG---HLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ----EGDFNL  344 (409)
Q Consensus       272 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~  344 (409)
                      +++|...|++..+.|   +...+..+...|...|   +.++|.+.|++..+.|   +...+..+...|..    .+++++
T Consensus       312 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~  385 (490)
T 2xm6_A          312 REQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQ  385 (490)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence            999999999998875   4566777777787766   7899999999998873   67888899999988    899999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhcCCC
Q 015329          345 AYIMCKDSMKKNWVPSVDTISALLEGLKK----NNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       345 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~  393 (409)
                      |.++|++..+.|   +...+..+...|.+    .++.++|.+.+++..+.++.
T Consensus       386 A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          386 AAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            999999999876   57788889999988    89999999999999988854

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.73  E-value=1.3e-13  Score=129.45  Aligned_cols=185  Identities=8%  Similarity=0.030  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCChh-------hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 015329          204 KAYLVMVEMQKLGVKPDVITYTTLISAFYK-------DNRPE-------IGNGLWNLMVCKGCFPNLATFNVRIQHLVNK  269 (409)
Q Consensus       204 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~  269 (409)
                      .+..+|++...... -+...|..++..+.+       .|+++       +|..+|+...+.-.+.+...|..++..+.+.
T Consensus       256 ~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          256 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            44455555554322 245556666665554       57765       6777777776522234566777777777777


Q ss_pred             CCHhHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHhHHH
Q 015329          270 RRSWQANKLMGLMQRFGIEPD--EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHY-LCQEGDFNLAY  346 (409)
Q Consensus       270 ~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~  346 (409)
                      |++++|..+|+++.+.  .|+  ...|...+..+.+.|++++|.++|++..+.... +...|...... +...|+.++|.
T Consensus       335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~  411 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF  411 (530)
T ss_dssp             TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHH
T ss_pred             CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHH
Confidence            7777777777777765  332  246777777777777777777777777765211 22333222222 23467777777


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          347 IMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       347 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      .+|+..++.. +.+...|..++..+.+.|+.++|..+|++..+..+.
T Consensus       412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~  457 (530)
T 2ooe_A          412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  457 (530)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence            7777776643 345667777777777777777777777777766543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.73  E-value=2.2e-16  Score=139.32  Aligned_cols=267  Identities=6%  Similarity=0.035  Sum_probs=136.1

Q ss_pred             CCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHH
Q 015329           43 DKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIM  122 (409)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  122 (409)
                      .+..|..+.....+.+++++|++.|.+.       +|..+|..++.++...|++++|+..++...+.  .+++.+...++
T Consensus        31 ~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li  101 (449)
T 1b89_A           31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI  101 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence            3457888888888999999999999653       57779999999999999999999988877764  33467788899


Q ss_pred             HHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCCh
Q 015329          123 MLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGIL  202 (409)
Q Consensus       123 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  202 (409)
                      .+|.+.|+++++.++++       .|+..+|+.+...|...|.+++|..+|..+          ..|..++.++.+.|++
T Consensus       102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~y  164 (449)
T 1b89_A          102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEY  164 (449)
T ss_dssp             -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCH
T ss_pred             HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccH
Confidence            99999999999998884       477789999999999999999999999655          3799999999999999


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 015329          203 DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLM  282 (409)
Q Consensus       203 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  282 (409)
                      ++|.+.+.++      .++.+|..++.+|...|+++.|......     +...+.-...++..|.+.|++++|..+++..
T Consensus       165 q~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~a  233 (449)
T 1b89_A          165 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA  233 (449)
T ss_dssp             HHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999998      2789999999999999999999655543     2234444567999999999999999999999


Q ss_pred             HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHhHHHHH
Q 015329          283 QRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-RLMP------NRKIYQTMIHYLCQEGDFNLAYIM  348 (409)
Q Consensus       283 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p------~~~~~~~li~~~~~~g~~~~a~~~  348 (409)
                      .... +-....|+-|.-.|++- ++++..+-++...+. .+.|      +...|..++..|...++++.|...
T Consensus       234 L~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t  304 (449)
T 1b89_A          234 LGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT  304 (449)
T ss_dssp             TTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred             hCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence            8665 44677888887777765 344444444433332 3333      456688999999999999988764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.72  E-value=1.7e-15  Score=124.51  Aligned_cols=201  Identities=13%  Similarity=-0.008  Sum_probs=150.7

Q ss_pred             CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329          183 QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVR  262 (409)
Q Consensus       183 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  262 (409)
                      +++...+..+...+.+.|++++|...|++..+.... +...+..+...+.+.|++++|+..+++..+.. +.+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            345667777888888888888888888888876543 67777888888888888888888888887764 4466777778


Q ss_pred             HHHHHhc-----------CCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 015329          263 IQHLVNK-----------RRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQT  331 (409)
Q Consensus       263 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  331 (409)
                      ..++...           |++++|...+++..+.... +...+..+...|...|++++|...|++..+..  .+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            8888888           9999999999998887433 57788888889999999999999999988877  58888899


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329          332 MIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQR  389 (409)
Q Consensus       332 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  389 (409)
                      +..+|...|++++|...|++.++.. +.+...+..+...+.+.|++++|.+.+++...
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            9999999999999999999988764 55778888888999999999999998887654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.72  E-value=2.3e-15  Score=127.16  Aligned_cols=225  Identities=13%  Similarity=0.062  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHH
Q 015329          117 FIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAF  196 (409)
Q Consensus       117 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~  196 (409)
                      .+..+...+...|++++|++.|++..+..  .+..++..+...+...|+++.|...+                       
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~-----------------------   61 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTL-----------------------   61 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHH-----------------------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHH-----------------------
Confidence            44445555556666666666666555544  44445555555555555555555554                       


Q ss_pred             HhcCChhHHHHHHHHHHhCCCC--CC----HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 015329          197 CEMGILDKAYLVMVEMQKLGVK--PD----VITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR  270 (409)
Q Consensus       197 ~~~g~~~~a~~~~~~m~~~g~~--~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~  270 (409)
                                   ++..+....  ++    ..++..+...+...|++++|...|+...+..  |+.       ..+...|
T Consensus        62 -------------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~  119 (258)
T 3uq3_A           62 -------------NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLR  119 (258)
T ss_dssp             -------------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHH
T ss_pred             -------------HHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHh
Confidence                         444332110  01    2444444444555555555555555544431  221       2344445


Q ss_pred             CHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 015329          271 RSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCK  350 (409)
Q Consensus       271 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  350 (409)
                      ++++|...++.+..... .+...+..+...+...|++++|...+++..+.... +...+..+..+|...|++++|...++
T Consensus       120 ~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~  197 (258)
T 3uq3_A          120 NAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCN  197 (258)
T ss_dssp             HHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            55666666665555421 13445555666666666666666666666554322 45566666666666666666666666


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329          351 DSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV  391 (409)
Q Consensus       351 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  391 (409)
                      +.++.. +.+...+..+..++.+.|++++|.+.++++.+..
T Consensus       198 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          198 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            666543 3445666666667777777777777776666555

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.71  E-value=1.5e-14  Score=121.75  Aligned_cols=206  Identities=11%  Similarity=0.022  Sum_probs=176.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH  265 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  265 (409)
                      ...+..+...+...|++++|.+.|+++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            566888888999999999999999999876433 67888889999999999999999999998864 4477888889999


Q ss_pred             HHhcCCHhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 015329          266 LVNKRRSWQANKLMGLMQRFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL  344 (409)
Q Consensus       266 ~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  344 (409)
                      |...|++++|..+++++.+.+..| +...+..+...|...|++++|.+.++++.+... .+...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999998743344 566788888999999999999999999887643 267888999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          345 AYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       345 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      |...++++.+.. +.+...+..+...+.+.|+.++|.++++++.+..|...
T Consensus       194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~  243 (252)
T 2ho1_A          194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL  243 (252)
T ss_dssp             HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence            999999988754 56778888889999999999999999999998876643

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.7e-14  Score=121.71  Aligned_cols=231  Identities=13%  Similarity=0.006  Sum_probs=141.2

Q ss_pred             cchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHH
Q 015329           80 KYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKV  159 (409)
Q Consensus        80 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  159 (409)
                      ...+..+...+...|++++|...++.+....  .+...+..+..+|...|++++|.+.|++..+..  |+..        
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~--------   72 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REMR--------   72 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT--------
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccc--------
Confidence            4567888999999999999999999998776  578888889999999999999999999987542  1100        


Q ss_pred             HHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhh
Q 015329          160 LTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEI  239 (409)
Q Consensus       160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~  239 (409)
                                          ........++..+...|...|++++|.+.|++..+..  |+.       ..+.+.|++++
T Consensus        73 --------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~  123 (258)
T 3uq3_A           73 --------------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEK  123 (258)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHH
T ss_pred             --------------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHH
Confidence                                0000012334444445555555555555555554421  221       22334455555


Q ss_pred             HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329          240 GNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG  319 (409)
Q Consensus       240 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  319 (409)
                      |...++.+.... +.+...+..+...+...|++++|...++++.+.... +...+..+...|...|++++|...++...+
T Consensus       124 a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  201 (258)
T 3uq3_A          124 ELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE  201 (258)
T ss_dssp             HHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            555555555432 223445555555666666666666666666554322 455566666666666666666666666655


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329          320 RRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       320 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  354 (409)
                      ... .+...|..+..++...|++++|...+++..+
T Consensus       202 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          202 KDP-NFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            432 1455566666666666666666666665554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.69  E-value=3.9e-14  Score=116.85  Aligned_cols=207  Identities=9%  Similarity=-0.052  Sum_probs=170.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329          185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ  264 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  264 (409)
                      +...+..+...+...|++++|.+.|+++.+.... +...+..+...+...|++++|...++...+.. +.+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            4667888888899999999999999988876433 57788888888999999999999999988764 456778888888


Q ss_pred             HHHhc-CCHhHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329          265 HLVNK-RRSWQANKLMGLMQRFGIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF  342 (409)
Q Consensus       265 ~~~~~-~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  342 (409)
                      .+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.... +...+..+...+...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence            99999 99999999999988733334 3567888888999999999999999998876332 577888899999999999


Q ss_pred             hHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          343 NLAYIMCKDSMKKNWV-PSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       343 ~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      ++|...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+..|...
T Consensus       164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~  216 (225)
T 2vq2_A          164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE  216 (225)
T ss_dssp             HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence            99999999888754 3 5777788888888999999999999999887776543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.68  E-value=3e-13  Score=133.24  Aligned_cols=316  Identities=12%  Similarity=0.056  Sum_probs=178.9

Q ss_pred             hHHHHhhhhcCChHHHHHHHHHhhcCCC-CCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHH
Q 015329           48 PPALVKLKAERDPEKLFQLFKANAHNRI-VIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYG  126 (409)
Q Consensus        48 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  126 (409)
                      +.....+...|.+.+|+++++.+...+. +.-+...-+.++...++. +..+..+..+.....    +   ...+...+.
T Consensus       989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A          989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence            4556677789999999999999985431 122333444455444443 223333333332211    0   112333444


Q ss_pred             hcCChHHHHHHHHHhhhcC---------------------CCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC
Q 015329          127 KAGMIKHAMDTFYDMHLYG---------------------CKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD  185 (409)
Q Consensus       127 ~~~~~~~a~~~~~~m~~~~---------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  185 (409)
                      ..|.+++|.++|++.....                     -.-+..+|..+..++...|++++|...|...       -|
T Consensus      1061 ~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD 1133 (1630)
T 1xi4_A         1061 SNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DD 1133 (1630)
T ss_pred             hCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CC
Confidence            4444444444444431000                     0012445556666666666666665555221       14


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH  265 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  265 (409)
                      ...|..++.+|.+.|++++|.++|....+..  ++....+.++.+|++.+++++.....    +   .++...|..+...
T Consensus      1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A         1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence            4555556666666666666666665555432  22222233555566665555322221    1   2344455556666


Q ss_pred             HHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 015329          266 LVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLA  345 (409)
Q Consensus       266 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  345 (409)
                      |...|++++|..+|...         ..|..+..+|.+.|++++|.+.+++..      +..+|..+-.+|...|++..|
T Consensus      1205 le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A         1205 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred             HHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHH
Confidence            66666666666666653         256666666666666666666666542      456666666666666666666


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhhcc
Q 015329          346 YIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILSK  408 (409)
Q Consensus       346 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~k  408 (409)
                      ......     +..++..+..++..|.+.|.+++|+++++.....+ +.....+..|-..|+|
T Consensus      1270 ~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A         1270 QMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred             HHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence            654332     34567788899999999999999999999888777 4445566666666665

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.68  E-value=1.1e-14  Score=121.80  Aligned_cols=207  Identities=11%  Similarity=0.029  Sum_probs=153.9

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329          185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ  264 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  264 (409)
                      ....|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            4556777788888889999999999988876433 67788888888888999999999998888764 446778888888


Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 015329          265 HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL  344 (409)
Q Consensus       265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  344 (409)
                      .+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHH
Confidence            88999999999999998887653 3677788888889999999999999998877633 367788888889999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329          345 AYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSS  396 (409)
Q Consensus       345 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  396 (409)
                      |...++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+..|....
T Consensus       178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  228 (243)
T 2q7f_A          178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML  228 (243)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence            999999887764 456778888889999999999999999999888766543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.67  E-value=4.7e-13  Score=114.16  Aligned_cols=223  Identities=8%  Similarity=-0.072  Sum_probs=126.4

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 015329          152 SLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCE----MGILDKAYLVMVEMQKLGVKPDVITYTTL  227 (409)
Q Consensus       152 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  227 (409)
                      ++..+...+...|+++.|..+|++..+    +-+...+..+...|..    .+++++|.+.|++..+.+   +...+..+
T Consensus         8 a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l   80 (273)
T 1ouv_A            8 ELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL   80 (273)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            344444444444455444444443322    1123344445555555    555666666665555543   44555555


Q ss_pred             HHHHHH----cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 015329          228 ISAFYK----DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN----KRRSWQANKLMGLMQRFGIEPDEVTYNLVIK  299 (409)
Q Consensus       228 l~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~  299 (409)
                      ...|..    .+++++|+..|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+..
T Consensus        81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~  154 (273)
T 1ouv_A           81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS  154 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence            555555    566666666666655543   44555555555655    666666666666665544   3444555555


Q ss_pred             HHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329          300 GFCR----SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ----EGDFNLAYIMCKDSMKKNWVPSVDTISALLEGL  371 (409)
Q Consensus       300 ~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~  371 (409)
                      .|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|.+.|++..+.+   +...+..+...|
T Consensus       155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~  228 (273)
T 1ouv_A          155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ  228 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence            5555    666666666666666553   34555666666666    666666666666666653   255566666666


Q ss_pred             Hh----CCChHHHHHHHHHHHhcCCC
Q 015329          372 KK----NNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       372 ~~----~g~~~~a~~~~~~~~~~~~~  393 (409)
                      .+    .++.++|.+.+++..+.+++
T Consensus       229 ~~g~~~~~~~~~A~~~~~~a~~~~~~  254 (273)
T 1ouv_A          229 YNGEGVTRNEKQAIENFKKGCKLGAK  254 (273)
T ss_dssp             HTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             HcCCCcccCHHHHHHHHHHHHHcCCH
Confidence            66    66677777777666666543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.67  E-value=3.5e-14  Score=131.24  Aligned_cols=337  Identities=8%  Similarity=-0.095  Sum_probs=213.6

Q ss_pred             hhhhcCChHHHHHHHHHhhcC----CC---CCCccchHHHHHHHHhcCCCchhHHHHHHHhhhC----C---CCCChhHH
Q 015329           53 KLKAERDPEKLFQLFKANAHN----RI---VIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSL----P---QGRREGFI  118 (409)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~  118 (409)
                      .....|+.++|++.|+...+.    .+   -+....+|..+...|...|++++|...+++....    .   ......++
T Consensus        60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~  139 (472)
T 4g1t_A           60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD  139 (472)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence            345679999999999877532    10   1123456888999999999999999998876532    1   11124556


Q ss_pred             HHHHHHHHh--cCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHH---HccCCHHHHHHHHHhcCccCCCCcCHHHHHHHH
Q 015329          119 MRIMMLYGK--AGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVL---TESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVI  193 (409)
Q Consensus       119 ~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll  193 (409)
                      ..+..++..  .+++++|++.|++..+.. +-+...+..+..++   ...++.+.+...+++..+..  +.+...+..+.
T Consensus       140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~  216 (472)
T 4g1t_A          140 CEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLA  216 (472)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHH
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHHHHH
Confidence            555555554  457899999999988764 33445555554443   34566666666665543331  22455565555


Q ss_pred             HHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 015329          194 KAFCE----MGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNK  269 (409)
Q Consensus       194 ~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~  269 (409)
                      ..+..    .|++++|.+.+++....... +..++..+...|...|++++|...+++..+.. +-+..++..+..+|...
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~  294 (472)
T 4g1t_A          217 LKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAK  294 (472)
T ss_dssp             HHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence            55444    46788899999988876543 67788889999999999999999999988763 34556666665555432


Q ss_pred             -------------------CCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--H
Q 015329          270 -------------------RRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRK--I  328 (409)
Q Consensus       270 -------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~  328 (409)
                                         +..+.|...+++..+.... +...+..+...|...|++++|.+.|++..+....+...  .
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~  373 (472)
T 4g1t_A          295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL  373 (472)
T ss_dssp             HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence                               2356677777777665422 45567788889999999999999999988764433221  2


Q ss_pred             HHHHHH-HHHHcCCHhHHHHHHHHHHhCC-----------------------CCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 015329          329 YQTMIH-YLCQEGDFNLAYIMCKDSMKKN-----------------------WVPSVDTISALLEGLKKNNQPCKANTIM  384 (409)
Q Consensus       329 ~~~li~-~~~~~g~~~~a~~~~~~m~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~  384 (409)
                      +..+.. .....|++++|+..|++.++..                       -+.+..+|..+..+|...|++++|++.+
T Consensus       374 ~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y  453 (472)
T 4g1t_A          374 HLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS  453 (472)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            222222 2346788999998888776532                       1345678888999999999999999999


Q ss_pred             HHHHhcCCCCC
Q 015329          385 ALVQRRVPHFS  395 (409)
Q Consensus       385 ~~~~~~~~~~~  395 (409)
                      ++..+.++..+
T Consensus       454 ~kALe~~~~~p  464 (472)
T 4g1t_A          454 ERGLESGSLIP  464 (472)
T ss_dssp             -----------
T ss_pred             HHHHhcCCCCC
Confidence            99998776554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.66  E-value=6.2e-14  Score=119.41  Aligned_cols=161  Identities=11%  Similarity=-0.025  Sum_probs=66.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc--CHHHHHHHHHHHHh
Q 015329          121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF--DIFSFNIVIKAFCE  198 (409)
Q Consensus       121 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~  198 (409)
                      ....+...|++++|++.|++..+.. +.+...+..+...+...|+++.|...+++.... +..+  ....|..+...|..
T Consensus         9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~   86 (272)
T 3u4t_A            9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMK   86 (272)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHH
Confidence            3344444455555555554444332 122223444444444444444444444333221 1111  12234444455555


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 015329          199 MGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKL  278 (409)
Q Consensus       199 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  278 (409)
                      .|++++|++.|++..+.... +..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...
T Consensus        87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  164 (272)
T 3u4t_A           87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS  164 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555443222 33444444444444444444444444444331 22333333333122222344444444


Q ss_pred             HHHHHHc
Q 015329          279 MGLMQRF  285 (409)
Q Consensus       279 ~~~~~~~  285 (409)
                      |+++.+.
T Consensus       165 ~~~a~~~  171 (272)
T 3u4t_A          165 FVKVLEL  171 (272)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            4444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.65  E-value=2.6e-14  Score=117.47  Aligned_cols=196  Identities=10%  Similarity=-0.059  Sum_probs=96.9

Q ss_pred             CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329          149 TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLI  228 (409)
Q Consensus       149 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll  228 (409)
                      +...+..+...+.+.|++++|...+++.....  +.+...+..+...+.+.|++++|+..|++..+.... +...+..+.
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg   80 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS   80 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence            33444444444444444444444444332221  113344444555555555555555555555543322 344444455


Q ss_pred             HHHHHc-----------CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHH
Q 015329          229 SAFYKD-----------NRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLV  297 (409)
Q Consensus       229 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l  297 (409)
                      ..+...           |++++|+..+++..+.. +-+...+..+..++...|++++|...|++..+..  .+...+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence            555555           66666666666665542 2344555556666666666666666666666555  355556666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329          298 IKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKD  351 (409)
Q Consensus       298 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  351 (409)
                      ..+|...|++++|...|++..+.... +...+..+...+...|++++|.+.+++
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            66666666666666666666554222 455556666666666666666666554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.65  E-value=1.5e-12  Score=122.18  Aligned_cols=205  Identities=9%  Similarity=-0.006  Sum_probs=162.0

Q ss_pred             CHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Q 015329          185 DIFSFNIVIKAFCE-------MGILD-------KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK  250 (409)
Q Consensus       185 ~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  250 (409)
                      +...|..++..+.+       .|+++       +|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+.+.+.
T Consensus       271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~  350 (530)
T 2ooe_A          271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI  350 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence            45566666666665       68987       89999999986212236888999999999999999999999999985


Q ss_pred             CCCCC-H-hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 015329          251 GCFPN-L-ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIK-GFCRSGHLDMAKKVYSAMLGRRLMPNRK  327 (409)
Q Consensus       251 ~~~~~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~  327 (409)
                        .|+ . ..|...+..+.+.|+.++|..+|++..+.... +...|..... .+...|+.++|..+|+...+... -+..
T Consensus       351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~  426 (530)
T 2ooe_A          351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPE  426 (530)
T ss_dssp             --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHH
T ss_pred             --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHH
Confidence              444 2 58888999999999999999999999876322 2333332222 23468999999999999887632 2678


Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          328 IYQTMIHYLCQEGDFNLAYIMCKDSMKKN-WVP--SVDTISALLEGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      .|..++..+.+.|+.++|..+|++.+..+ ..|  ....|...+......|+.+.+.++.+++.+..|.
T Consensus       427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          427 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            89999999999999999999999998864 233  2458888888889999999999999999988874

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.65  E-value=1.4e-13  Score=115.81  Aligned_cols=200  Identities=12%  Similarity=0.013  Sum_probs=124.5

Q ss_pred             chHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHH
Q 015329           81 YAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVL  160 (409)
Q Consensus        81 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  160 (409)
                      ..+..+...+...|++++|.+.++.+....+. +...+..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            44566667777777778887777777655332 45566667777777777777777777776653 33555666666666


Q ss_pred             HccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhh
Q 015329          161 TESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEI  239 (409)
Q Consensus       161 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~  239 (409)
                      ...|++++|..++++... .+..| +...+..+...+...|++++|.+.|++..+.... +...+..+...+...|++++
T Consensus       116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence            667777666666665544 22223 3445666666666666666666666666654322 45555666666666666666


Q ss_pred             HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329          240 GNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       240 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  285 (409)
                      |...++...+.. +.+...+..+...+...|+.++|..+++++.+.
T Consensus       194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            666666665542 334455555556666666666666666666554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.64  E-value=3.8e-14  Score=120.87  Aligned_cols=248  Identities=10%  Similarity=-0.056  Sum_probs=179.3

Q ss_pred             HhcCChHHHHHHHHHhhhcCC---CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCCh
Q 015329          126 GKAGMIKHAMDTFYDMHLYGC---KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGIL  202 (409)
Q Consensus       126 ~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  202 (409)
                      ...|++++|++.|+++.+...   +.+..++..+...+...|+++.|...+++.....  +.+..++..+...|...|++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCH
Confidence            456889999999999887532   1245678888888899999999999887765542  23577888888899999999


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 015329          203 DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLM  282 (409)
Q Consensus       203 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  282 (409)
                      ++|.+.|++..+.... +..++..+...+...|++++|...++.+.+..  |+.......+..+...|++++|...+++.
T Consensus        94 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  170 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH  170 (275)
T ss_dssp             HHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999998876433 57788888888999999999999999888753  44444455555667778899999999777


Q ss_pred             HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC
Q 015329          283 QRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP---NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP  359 (409)
Q Consensus       283 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  359 (409)
                      ..... ++...+ .++..+...++.++|...+..........   +...+..+...|...|++++|...|++.++..  |
T Consensus       171 ~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p  246 (275)
T 1xnf_A          171 FEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V  246 (275)
T ss_dssp             HHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred             HhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence            66532 233333 36666777788888888888877652211   14677888888888999999999998888763  4


Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHH
Q 015329          360 SVDTISALLEGLKKNNQPCKANTIM  384 (409)
Q Consensus       360 ~~~~~~~l~~~~~~~g~~~~a~~~~  384 (409)
                      +.  +.....++...|++++|++.+
T Consensus       247 ~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          247 HN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             TT--CHHHHHHHHHHHHHHHC----
T ss_pred             hh--HHHHHHHHHHHHHHHhhHHHH
Confidence            22  223345666778888877665

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.64  E-value=1.6e-12  Score=120.09  Aligned_cols=311  Identities=8%  Similarity=-0.108  Sum_probs=220.5

Q ss_pred             CCccchHHHHHHHHhcCCCchhHHHHHHHhhhC--------CCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC---
Q 015329           77 IENKYAFEDTVSRLAGARRFDYIEHLLEHQKSL--------PQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYG---  145 (409)
Q Consensus        77 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---  145 (409)
                      ......|+.+...+...|++++|++.|++....        .......+|..+..+|...|++++|...+++..+..   
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            344567999999999999999999999876532        112235577889999999999999999999875421   


Q ss_pred             ---CC-CCHHhHHHHHHHHHcc--CCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHH---HHhcCChhHHHHHHHHHHhC
Q 015329          146 ---CK-RTVKSLNAALKVLTES--RDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKA---FCEMGILDKAYLVMVEMQKL  215 (409)
Q Consensus       146 ---~~-~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~  215 (409)
                         .. ....++.....++...  +++++|...|++....   .|+ ...+..+..+   +...++.++|++.|++..+.
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l  204 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL  204 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence               11 2345666666666554  4679999999876554   333 4444444444   45567888999999998876


Q ss_pred             CCCCCHHHHHHHHHHHHH----cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH
Q 015329          216 GVKPDVITYTTLISAFYK----DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE  291 (409)
Q Consensus       216 g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~  291 (409)
                      ... +..++..+...+..    .+++++|...+++..... +.+...+..+...|...|++++|...+++..+.... +.
T Consensus       205 ~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~  281 (472)
T 4g1t_A          205 NPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NA  281 (472)
T ss_dssp             CSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CH
T ss_pred             CCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hH
Confidence            433 56666666655554    467889999999988764 567788899999999999999999999999887533 56


Q ss_pred             HHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329          292 VTYNLVIKGFCRS-------------------GHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS  352 (409)
Q Consensus       292 ~~~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  352 (409)
                      .++..+...|...                   +..++|...++...+.... +...+..+...|...|++++|.+.|++.
T Consensus       282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~ka  360 (472)
T 4g1t_A          282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKE  360 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence            6666666655432                   2356778888877765322 4556788899999999999999999999


Q ss_pred             HhCCCCCCHH--HHHHHHH-HHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          353 MKKNWVPSVD--TISALLE-GLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       353 ~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      ++....+...  .+..+.. .....|+.++|++.+++..+..+..
T Consensus       361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~  405 (472)
T 4g1t_A          361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS  405 (472)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred             HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence            8865332221  2233322 3457899999999999988776654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.64  E-value=1.5e-13  Score=113.29  Aligned_cols=198  Identities=9%  Similarity=-0.112  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHH
Q 015329          118 IMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFC  197 (409)
Q Consensus       118 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~  197 (409)
                      +..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+++.|..++++.....  +.+..++..+...+.
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~   87 (225)
T 2vq2_A           11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGWFLC   87 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHH
Confidence            3334444444444444444444444332 2233344444444444444444444443332221  113344445555555


Q ss_pred             hc-CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHH
Q 015329          198 EM-GILDKAYLVMVEMQKLGVKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQA  275 (409)
Q Consensus       198 ~~-g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  275 (409)
                      .. |++++|...|+++.+.+..| +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence            55 55555555555555421112 13444455555555555555555555555432 22344555555555555555555


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329          276 NKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG  319 (409)
Q Consensus       276 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  319 (409)
                      ...++++.+.....+...+..+...+...|+.+++..+++.+.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            55555555443212444455555555555556555555555543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.63  E-value=4.3e-13  Score=119.31  Aligned_cols=248  Identities=8%  Similarity=-0.025  Sum_probs=179.4

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCC-HHHHHHHHHhcCccCCCCcCHHHHHHHH
Q 015329          115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRD-LKAIQAFLMEVPEKFHIQFDIFSFNIVI  193 (409)
Q Consensus       115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~ll  193 (409)
                      ...+..+...+...|++++|++.|++.++.. +-+..+|+.+..++...|+ +++|...+++.....  +-+...|+.+.
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g  173 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence            4456667777778888888888888887764 4456677888888888886 888888887665542  22566788888


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh-cCCH
Q 015329          194 KAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN-KRRS  272 (409)
Q Consensus       194 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~  272 (409)
                      .++...|++++|+..|+++.+.... +...|..+..++.+.|++++|+..++++.+.. +-+...|+.+..++.. .|..
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence            8888888888888888888886544 77888888888888888888888888888864 4567788888888888 5554


Q ss_pred             hHH-----HHHHHHHHHcCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----
Q 015329          273 WQA-----NKLMGLMQRFGIEPDEVTYNLVIKGFCRSG--HLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG-----  340 (409)
Q Consensus       273 ~~a-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----  340 (409)
                      ++|     +..|++..+.... +...|+.+...+...|  ++++|.+.+.++ +.. ..+...+..+..+|.+.|     
T Consensus       252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~  328 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCD  328 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccccc
Confidence            666     4777777776433 5677777777787777  578888888887 332 335677788888887764     


Q ss_pred             ----CHhHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 015329          341 ----DFNLAYIMCKDS-MKKNWVPSVDTISALLEGL  371 (409)
Q Consensus       341 ----~~~~a~~~~~~m-~~~~~~~~~~~~~~l~~~~  371 (409)
                          .+++|.++++++ .+.+ +.....|..+...+
T Consensus       329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l  363 (382)
T 2h6f_A          329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL  363 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence                257888888887 5543 33334454444443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.63  E-value=1.7e-12  Score=110.61  Aligned_cols=223  Identities=9%  Similarity=-0.086  Sum_probs=160.1

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHhcCccCCCCcCHHHHH
Q 015329          115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE----SRDLKAIQAFLMEVPEKFHIQFDIFSFN  190 (409)
Q Consensus       115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  190 (409)
                      ...+..+...|...|++++|++.|++..+   +-+...+..+...|..    .++++.|..+|++..+. +   +...+.
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~   78 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCH   78 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHH
Confidence            44455566666677777777777777665   2244566666666776    77777777777655433 2   566677


Q ss_pred             HHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329          191 IVIKAFCE----MGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYK----DNRPEIGNGLWNLMVCKGCFPNLATFNVR  262 (409)
Q Consensus       191 ~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  262 (409)
                      .+...|..    .+++++|++.|++..+.+   +...+..+...|..    .+++++|+..|++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            77777777    788888888888777764   56677777777777    788888888888877765   55666667


Q ss_pred             HHHHHh----cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329          263 IQHLVN----KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCR----SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH  334 (409)
Q Consensus       263 l~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  334 (409)
                      ...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+..
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~  226 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  226 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence            777777    788888888888877764   45666777777877    888888888888887763   3566777777


Q ss_pred             HHHH----cCCHhHHHHHHHHHHhCC
Q 015329          335 YLCQ----EGDFNLAYIMCKDSMKKN  356 (409)
Q Consensus       335 ~~~~----~g~~~~a~~~~~~m~~~~  356 (409)
                      .|..    .+++++|.+.|++..+.|
T Consensus       227 ~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          227 MQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            7877    788888888888877664

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.63  E-value=2.2e-14  Score=122.42  Aligned_cols=246  Identities=11%  Similarity=-0.051  Sum_probs=141.7

Q ss_pred             CCCchhHHHHHHHhhhCCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHH
Q 015329           93 ARRFDYIEHLLEHQKSLPQG---RREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAI  169 (409)
Q Consensus        93 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  169 (409)
                      .|++++|+..++++......   .+...+..+...|...|++++|.+.|++..+.+ +.+..+|..+...+...|+++.|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            34455555555555443211   123344445555555566666666555555443 33455555566666666666666


Q ss_pred             HHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329          170 QAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVC  249 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  249 (409)
                      ...+++.....  +.+...+..+...|...|++++|.+.|+++.+..  |+.......+..+...|++++|...++....
T Consensus        97 ~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           97 YEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            66655443321  1235566777777777777777777777777643  3333334444455666777788777766665


Q ss_pred             cCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 015329          250 KGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP---DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR  326 (409)
Q Consensus       250 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  326 (409)
                      .. +++...+ .++..+...++.++|...+....+.....   +...+..+...|.+.|++++|...|++..+..  |+.
T Consensus       173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~  248 (275)
T 1xnf_A          173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN  248 (275)
T ss_dssp             HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred             cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence            42 3333333 35666667777777777777765442111   14667777888888888888888888887653  322


Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHH
Q 015329          327 KIYQTMIHYLCQEGDFNLAYIMC  349 (409)
Q Consensus       327 ~~~~~li~~~~~~g~~~~a~~~~  349 (409)
                        +.....++...|++++|.+.+
T Consensus       249 --~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          249 --FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             --CHHHHHHHHHHHHHHHC----
T ss_pred             --HHHHHHHHHHHHHHHhhHHHH
Confidence              223344566677777776655

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.63  E-value=6.5e-13  Score=113.07  Aligned_cols=228  Identities=9%  Similarity=-0.001  Sum_probs=138.6

Q ss_pred             HhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC--hhHHHHHHHHHHhcC
Q 015329           52 VKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR--EGFIMRIMMLYGKAG  129 (409)
Q Consensus        52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~  129 (409)
                      ..+...|++++|++.|+.+.+..  +.+...+..+...+...|++++|.+.++.....+..+.  ...+..+...|...|
T Consensus        11 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~   88 (272)
T 3u4t_A           11 DFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG   88 (272)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence            34556677777777777776665  23444667777777777777777777777766332111  223566777777777


Q ss_pred             ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 015329          130 MIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVM  209 (409)
Q Consensus       130 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  209 (409)
                      ++++|++.|++..+.. +.+..++..+...+...|+++.|...+++....  .+.+...+..+...+...+++++|.+.|
T Consensus        89 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~  165 (272)
T 3u4t_A           89 QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSF  165 (272)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777776654 334566777777777777777777777655443  1223445555552333445777777777


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHcCC---hhhHHHHHHHHHhcC-CCCC------HhhHHHHHHHHHhcCCHhHHHHHH
Q 015329          210 VEMQKLGVKPDVITYTTLISAFYKDNR---PEIGNGLWNLMVCKG-CFPN------LATFNVRIQHLVNKRRSWQANKLM  279 (409)
Q Consensus       210 ~~m~~~g~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~-~~~~------~~~~~~ll~~~~~~~~~~~a~~~~  279 (409)
                      ++..+.... +...+..+...+...|+   +++|...+++..+.. ..|+      ..+|..+...|...|++++|...+
T Consensus       166 ~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  244 (272)
T 3u4t_A          166 VKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW  244 (272)
T ss_dssp             HHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            777664322 35555566666666666   666666666655431 1122      134555555666666666666666


Q ss_pred             HHHHHc
Q 015329          280 GLMQRF  285 (409)
Q Consensus       280 ~~~~~~  285 (409)
                      ++..+.
T Consensus       245 ~~al~~  250 (272)
T 3u4t_A          245 KNILAL  250 (272)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            666554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.61  E-value=1.1e-13  Score=115.72  Aligned_cols=197  Identities=11%  Similarity=0.038  Sum_probs=97.4

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329          153 LNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFY  232 (409)
Q Consensus       153 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~  232 (409)
                      |..+...+...|+++.|..++++....  .+.+...+..+...+...|++++|.+.|++..+.... +..++..+...+.
T Consensus        26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~  102 (243)
T 2q7f_A           26 GGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV  102 (243)
T ss_dssp             ----------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence            333334444444444444444333221  1113444445555555555555555555555543222 4455555555555


Q ss_pred             HcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 015329          233 KDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKK  312 (409)
Q Consensus       233 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  312 (409)
                      ..|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+.+.|++++|..
T Consensus       103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHH
Confidence            5555555555555555542 33445555555566666666666666666555432 245555566666666666666666


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          313 VYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       313 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      .++++.+... .+..++..+..+|...|++++|.+.++++.+.
T Consensus       181 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          181 QFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            6666655422 24555666666666666666666666666554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.61  E-value=3.6e-13  Score=119.78  Aligned_cols=237  Identities=9%  Similarity=-0.027  Sum_probs=199.2

Q ss_pred             HHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329          150 VKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGI-LDKAYLVMVEMQKLGVKPDVITYTTLI  228 (409)
Q Consensus       150 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~ll  228 (409)
                      ...|..+...+...|+++.|...+++.....  +-+...|+.+...+...|+ +++|+..|++..+.... +...|..+.
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g  173 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence            4567788888999999999999998776542  2257789999999999997 99999999999997655 788999999


Q ss_pred             HHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-cCCH
Q 015329          229 SAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCR-SGHL  307 (409)
Q Consensus       229 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~  307 (409)
                      .++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++.+.... +...|+.+..++.+ .|..
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence            99999999999999999999875 567889999999999999999999999999988644 78899999999999 6665


Q ss_pred             HHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-----
Q 015329          308 DMA-----KKVYSAMLGRRLMPNRKIYQTMIHYLCQEG--DFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN-----  375 (409)
Q Consensus       308 ~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-----  375 (409)
                      ++|     +..+++.+..... +...|+.+...+...|  ++++|.+.+.++ +. -+.+...+..+..+|.+.|     
T Consensus       252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~  328 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD  328 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence            777     5888888876433 6778888888888888  689999999987 43 3567788899999998874     


Q ss_pred             ----ChHHHHHHHHHH-HhcCCCC
Q 015329          376 ----QPCKANTIMALV-QRRVPHF  394 (409)
Q Consensus       376 ----~~~~a~~~~~~~-~~~~~~~  394 (409)
                          ..++|+++++++ .+.+|..
T Consensus       329 ~~~~~~~~A~~~~~~l~~~~DP~r  352 (382)
T 2h6f_A          329 NKEDILNKALELCEILAKEKDTIR  352 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             chHHHHHHHHHHHHHHHHHhCchh
Confidence                258999999999 6776543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.60  E-value=1.7e-14  Score=130.42  Aligned_cols=299  Identities=8%  Similarity=-0.069  Sum_probs=201.4

Q ss_pred             ccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHhhhc----CCCC-CH
Q 015329           79 NKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR---EGFIMRIMMLYGKAGMIKHAMDTFYDMHLY----GCKR-TV  150 (409)
Q Consensus        79 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~  150 (409)
                      ....+......+...|++++|...|+++....+...   ..++..+...|...|++++|.+.|++....    +-.| ..
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            334455566777778888888888887776543321   245666777788888888888887776432    1111 23


Q ss_pred             HhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC----HHHHHHHHHHHHhcCC--------------------hhHHH
Q 015329          151 KSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD----IFSFNIVIKAFCEMGI--------------------LDKAY  206 (409)
Q Consensus       151 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~--------------------~~~a~  206 (409)
                      .++..+...+...|+++.|...+++......-.++    ..++..+...|...|+                    +++|.
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            46677777788888887777777654332111111    4467778888888888                    88888


Q ss_pred             HHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CCC----HhhHHHHHHHHHhcCCHhHHH
Q 015329          207 LVMVEMQKL----GVKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGC-FPN----LATFNVRIQHLVNKRRSWQAN  276 (409)
Q Consensus       207 ~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~  276 (409)
                      +.+++..+.    +..+ ...++..+...+...|++++|...+++..+... .++    ..++..+...|...|++++|.
T Consensus       168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  247 (406)
T 3sf4_A          168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  247 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            888876542    1111 234677788888889999999998888765310 111    237778888889999999999


Q ss_pred             HHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHhHHH
Q 015329          277 KLMGLMQRF----GIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRL-MPN----RKIYQTMIHYLCQEGDFNLAY  346 (409)
Q Consensus       277 ~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~  346 (409)
                      ..+++..+.    +..+ ...++..+...|...|++++|...+++..+... ..+    ..++..+...|...|++++|.
T Consensus       248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  327 (406)
T 3sf4_A          248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM  327 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999887643    1111 145777888889999999999999988765411 112    456778888899999999999


Q ss_pred             HHHHHHHhC----CC-CCCHHHHHHHHHHHHhCCCh
Q 015329          347 IMCKDSMKK----NW-VPSVDTISALLEGLKKNNQP  377 (409)
Q Consensus       347 ~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~~  377 (409)
                      +.+++..+.    +. .....++..+...+...|+.
T Consensus       328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            998887653    21 12245666677777777765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.58  E-value=1.7e-13  Score=124.25  Aligned_cols=279  Identities=10%  Similarity=-0.052  Sum_probs=146.6

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHH
Q 015329           82 AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRRE---GFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALK  158 (409)
Q Consensus        82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  158 (409)
                      .+..+...+...|++++|...|+++....+....   ..+..+...|...|++++|.+.|++..+..             
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------  116 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA-------------  116 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------
Confidence            3444556666677777777777766655332111   345556666666777777777666654320             


Q ss_pred             HHHccCCHHHHHHHHHhcCccCCC-CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHH
Q 015329          159 VLTESRDLKAIQAFLMEVPEKFHI-QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL----G-VKPDVITYTTLISAFY  232 (409)
Q Consensus       159 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~~~~~ll~~~~  232 (409)
                                         ...+- .....++..+...|...|++++|...|++..+.    + ......++..+...|.
T Consensus       117 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  177 (411)
T 4a1s_A          117 -------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH  177 (411)
T ss_dssp             -------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             -------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence                               00000 112233444444555555555555554444331    0 0011234444555555


Q ss_pred             HcCC-----------------hhhHHHHHHHHHhc----CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-c
Q 015329          233 KDNR-----------------PEIGNGLWNLMVCK----GC-FPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE-P  289 (409)
Q Consensus       233 ~~~~-----------------~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p  289 (409)
                      ..|+                 +++|...+++..+.    +. .....++..+...|...|++++|...+++..+.... .
T Consensus       178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  257 (411)
T 4a1s_A          178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG  257 (411)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence            5555                 55555555443321    11 112235555666666666666666666665432100 0


Q ss_pred             C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC----
Q 015329          290 D----EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM-----PNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN----  356 (409)
Q Consensus       290 ~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----  356 (409)
                      +    ...+..+...|...|++++|...+++.......     ....++..+...|...|++++|...+++.++..    
T Consensus       258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  337 (411)
T 4a1s_A          258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG  337 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence            1    225566666677777777777777665543100     113456666667777777777777776665431    


Q ss_pred             -CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329          357 -WVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP  392 (409)
Q Consensus       357 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  392 (409)
                       ......++..+...|.+.|++++|.+.+++..+...
T Consensus       338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence             011133566666777777777777777777665543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.58  E-value=8.2e-14  Score=126.26  Aligned_cols=270  Identities=9%  Similarity=-0.048  Sum_probs=170.5

Q ss_pred             hhhhcCChHHHHHHHHHhhcCCCCCCcc----chHHHHHHHHhcCCCchhHHHHHHHhhhC----CC-CCChhHHHHHHH
Q 015329           53 KLKAERDPEKLFQLFKANAHNRIVIENK----YAFEDTVSRLAGARRFDYIEHLLEHQKSL----PQ-GRREGFIMRIMM  123 (409)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~  123 (409)
                      .+...|++++|++.|+.+.+..  +.+.    .++..+...+...|++++|...+++....    +. ......+..+..
T Consensus        57 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  134 (411)
T 4a1s_A           57 RLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN  134 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence            3567799999999999998876  2222    46788889999999999999999987643    11 112455667888


Q ss_pred             HHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCC--
Q 015329          124 LYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGI--  201 (409)
Q Consensus       124 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--  201 (409)
                      .|...|++++|.+.|++..+....               .++                ......++..+...|...|+  
T Consensus       135 ~~~~~g~~~~A~~~~~~al~~~~~---------------~~~----------------~~~~~~~~~~l~~~~~~~g~~~  183 (411)
T 4a1s_A          135 TLKVMGRFDEAAICCERHLTLARQ---------------LGD----------------RLSEGRALYNLGNVYHAKGKHL  183 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH---------------HTC----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHH---------------hhc----------------hHHHHHHHHHHHHHHHHcCccc
Confidence            888999999999998887642100               000                00012234444444444444  


Q ss_pred             ---------------hhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-CC----H
Q 015329          202 ---------------LDKAYLVMVEMQKL----GV-KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCF-PN----L  256 (409)
Q Consensus       202 ---------------~~~a~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~  256 (409)
                                     +++|++.+++..+.    +. .....++..+...+...|++++|...+++..+.... ++    .
T Consensus       184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  263 (411)
T 4a1s_A          184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER  263 (411)
T ss_dssp             HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence                           55555555444321    10 112235556666666677777777766665542100 01    2


Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-CCCH
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE-----PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR----L-MPNR  326 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~-~p~~  326 (409)
                      .++..+...|...|++++|...+++..+....     ....++..+...|...|++++|...+++..+..    . ....
T Consensus       264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  343 (411)
T 4a1s_A          264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA  343 (411)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence            35666777777788888888777776543110     124566777778888888888888888776531    0 1123


Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          327 KIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      .++..+...|...|++++|.+.+++..+.
T Consensus       344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          344 RACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46777788888888888888888877653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.57  E-value=1.1e-11  Score=122.52  Aligned_cols=288  Identities=13%  Similarity=0.085  Sum_probs=149.0

Q ss_pred             HhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCh
Q 015329           52 VKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMI  131 (409)
Q Consensus        52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  131 (409)
                      ..+...+.+++|..+|+......      ...+.++.   ..+++++|.++.++..      ++.+|..+..++...|++
T Consensus      1057 ~Iai~lglyEEAf~IYkKa~~~~------~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A         1057 NIAISNELFEEAFAIFRKFDVNT------SAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred             HHHHhCCCHHHHHHHHHHcCCHH------HHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence            33445677777777777652111      11111211   4455555555555431      345555555555555555


Q ss_pred             HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 015329          132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVE  211 (409)
Q Consensus       132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  211 (409)
                      ++|++.|.+.      -|...|..++.++.+.|+++++.+++... .+..  ++....+.++.+|++.++++....+.  
T Consensus      1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA-rk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A         1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA-RKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred             HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH-Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence            5555555332      23444555555555555555555555222 2111  22222223455555555544322221  


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc------
Q 015329          212 MQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF------  285 (409)
Q Consensus       212 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------  285 (409)
                        +   .++...|..+...|...|++++|...|...         ..|..+..+|++.|++++|.+.+++....      
T Consensus      1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev 1256 (1630)
T 1xi4_A         1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV 1256 (1630)
T ss_pred             --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHH
Confidence              1   123334444555555555555555555542         24445555555555555555444433110      


Q ss_pred             ------------------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHhHH
Q 015329          286 ------------------GIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE--GDFNLA  345 (409)
Q Consensus       286 ------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a  345 (409)
                                        ++..+...+..++..|.+.|.+++|+.+++...... .-....|+-+...|++.  ++..++
T Consensus      1257 ~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A         1257 CFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred             HHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHH
Confidence                              112245556677778888888888888887766543 22444566666666553  445555


Q ss_pred             HHHHHHHHhCCCCC------CHHHHHHHHHHHHhCCChHHHHH
Q 015329          346 YIMCKDSMKKNWVP------SVDTISALLEGLKKNNQPCKANT  382 (409)
Q Consensus       346 ~~~~~~m~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~  382 (409)
                      .++|..-.  ++++      +...|.-++..|.+.|+++.|..
T Consensus      1336 lk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1336 LELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             HHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            55554322  2222      45678888888999999998873

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.56  E-value=1.2e-13  Score=121.20  Aligned_cols=136  Identities=9%  Similarity=-0.061  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----H
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMGLMQRF----GIE-PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM-PN----R  326 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~  326 (409)
                      ..+..+...+...|++++|...+++..+.    +.. ....++..+...+...|++++|...+++..+.... .+    .
T Consensus       184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  263 (338)
T 3ro2_A          184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA  263 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            34555556666666666666666655432    100 01235566666666777777777766665433100 11    3


Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329          327 KIYQTMIHYLCQEGDFNLAYIMCKDSMKKN-----WVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP  392 (409)
Q Consensus       327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  392 (409)
                      .++..+...|...|++++|...+++..+..     ......++..+...|.+.|++++|.+.+++..+...
T Consensus       264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            456666677777777777777776665431     011134566677777777777777777777766543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.55  E-value=4.6e-13  Score=120.92  Aligned_cols=276  Identities=9%  Similarity=-0.062  Sum_probs=209.3

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC----HHhHHHHHHHHHccCCHHHHHHHHHhcCcc---CCCCc-CH
Q 015329          115 EGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRT----VKSLNAALKVLTESRDLKAIQAFLMEVPEK---FHIQF-DI  186 (409)
Q Consensus       115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~  186 (409)
                      ...+......+...|++++|...|++..+.+ +.+    ..++..+...+...|+++.|...+++....   .+-.| ..
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            4445567788999999999999999998864 233    357888999999999999999988654322   22222 25


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCC--------------------hhhHH
Q 015329          187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-PD----VITYTTLISAFYKDNR--------------------PEIGN  241 (409)
Q Consensus       187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~~~--------------------~~~a~  241 (409)
                      .++..+...|...|++++|...+++..+.... .+    ..++..+...+...|+                    +++|.
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            56888899999999999999999988753110 12    4478888889999999                    99999


Q ss_pred             HHHHHHHhc----CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CcC----HHHHHHHHHHHHhcCCHHHHH
Q 015329          242 GLWNLMVCK----GC-FPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGI-EPD----EVTYNLVIKGFCRSGHLDMAK  311 (409)
Q Consensus       242 ~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~  311 (409)
                      ..+....+.    +. .....++..+...|...|++++|...+++..+... .++    ..++..+...|...|++++|.
T Consensus       168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  247 (406)
T 3sf4_A          168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  247 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            998876542    11 11245788888999999999999999998865311 111    347888899999999999999


Q ss_pred             HHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC----C-CCCHHHHHHHHHHHHhCCChHHHH
Q 015329          312 KVYSAMLGRRLM-PN----RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN----W-VPSVDTISALLEGLKKNNQPCKAN  381 (409)
Q Consensus       312 ~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~  381 (409)
                      ..+++..+.... ++    ..++..+...|...|++++|...+++..+..    - .....++..+...|...|++++|.
T Consensus       248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  327 (406)
T 3sf4_A          248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM  327 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999987654111 11    5577888999999999999999999886541    1 111557888889999999999999


Q ss_pred             HHHHHHHhcC
Q 015329          382 TIMALVQRRV  391 (409)
Q Consensus       382 ~~~~~~~~~~  391 (409)
                      +.+++..+..
T Consensus       328 ~~~~~al~~~  337 (406)
T 3sf4_A          328 HFAEKHLEIS  337 (406)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999876553

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.55  E-value=4e-13  Score=117.77  Aligned_cols=274  Identities=8%  Similarity=-0.060  Sum_probs=209.5

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHhhhc----CCC-CCHHhH
Q 015329           82 AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR---EGFIMRIMMLYGKAGMIKHAMDTFYDMHLY----GCK-RTVKSL  153 (409)
Q Consensus        82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~  153 (409)
                      .+......+...|++++|...++++....+...   ...+..+...|...|++++|.+.+++..+.    +-. ....++
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            455567788899999999999999987654322   356778889999999999999999987543    212 235578


Q ss_pred             HHHHHHHHccCCHHHHHHHHHhcCccCCCCcC----HHHHHHHHHHHHhcCC--------------------hhHHHHHH
Q 015329          154 NAALKVLTESRDLKAIQAFLMEVPEKFHIQFD----IFSFNIVIKAFCEMGI--------------------LDKAYLVM  209 (409)
Q Consensus       154 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~--------------------~~~a~~~~  209 (409)
                      ..+...+...|+++.|...+++......-.++    ..++..+...|...|+                    +++|.+.+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            88999999999999999999775443221222    4478888899999999                    99999999


Q ss_pred             HHHHhC----CCC-CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-CC----HhhHHHHHHHHHhcCCHhHHHHHH
Q 015329          210 VEMQKL----GVK-PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCF-PN----LATFNVRIQHLVNKRRSWQANKLM  279 (409)
Q Consensus       210 ~~m~~~----g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~  279 (409)
                      ++....    +.. ....++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|...+
T Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  246 (338)
T 3ro2_A          167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY  246 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            887642    111 12446778888999999999999999998875211 11    237788888999999999999999


Q ss_pred             HHHHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-CCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 015329          280 GLMQRFGIE-PD----EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR----L-MPNRKIYQTMIHYLCQEGDFNLAYIMC  349 (409)
Q Consensus       280 ~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~-~p~~~~~~~li~~~~~~g~~~~a~~~~  349 (409)
                      ++..+.... .+    ..++..+...|...|++++|...+++..+..    . .....++..+...|...|++++|...+
T Consensus       247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  326 (338)
T 3ro2_A          247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA  326 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            988653111 11    5577888899999999999999999987641    1 111446778899999999999999999


Q ss_pred             HHHHhC
Q 015329          350 KDSMKK  355 (409)
Q Consensus       350 ~~m~~~  355 (409)
                      ++..+.
T Consensus       327 ~~a~~~  332 (338)
T 3ro2_A          327 EKHLEI  332 (338)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.54  E-value=2.9e-12  Score=102.17  Aligned_cols=166  Identities=12%  Similarity=-0.010  Sum_probs=86.4

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329          185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ  264 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  264 (409)
                      +...|..+...|.+.|++++|++.|++..+.... +..++..+...+.+.|++++|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            3445555666666666666666666665554332 45555555555555555555555555555442 233444444455


Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 015329          265 HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL  344 (409)
Q Consensus       265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  344 (409)
                      .+...++++.+...+.+..+.... +...+..+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence            555555555555555555444321 3444455555555555555555555555443221 34445555555555555555


Q ss_pred             HHHHHHHHHh
Q 015329          345 AYIMCKDSMK  354 (409)
Q Consensus       345 a~~~~~~m~~  354 (409)
                      |.+.|++.++
T Consensus       160 A~~~~~~al~  169 (184)
T 3vtx_A          160 AVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5555555444

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.53  E-value=5.7e-12  Score=100.46  Aligned_cols=170  Identities=6%  Similarity=-0.044  Sum_probs=135.4

Q ss_pred             CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 015329          220 DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIK  299 (409)
Q Consensus       220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~  299 (409)
                      +..+|..+...+.+.|++++|+..|++..+.. +-+...+..+..+|.+.|++++|...+......... +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence            56778888888888888888888888888764 456777888888888888888888888888776533 5666777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 015329          300 GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCK  379 (409)
Q Consensus       300 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~  379 (409)
                      .+...++++.|...+.+....... +...+..+...|...|++++|++.|++.++.. +.+..+|..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            888888888888888887766433 66778888888888888888888888887764 5567788888888888888888


Q ss_pred             HHHHHHHHHhcCCC
Q 015329          380 ANTIMALVQRRVPH  393 (409)
Q Consensus       380 a~~~~~~~~~~~~~  393 (409)
                      |++.+++..+..|.
T Consensus       160 A~~~~~~al~~~p~  173 (184)
T 3vtx_A          160 AVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHhCCcc
Confidence            88888888877654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.53  E-value=2.7e-11  Score=105.09  Aligned_cols=186  Identities=10%  Similarity=-0.010  Sum_probs=100.7

Q ss_pred             hHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC-Hh-hHHHHHHHHHhcCCHhHHHHHH
Q 015329          203 DKAYLVMVEMQK-LGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN-LA-TFNVRIQHLVNKRRSWQANKLM  279 (409)
Q Consensus       203 ~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~  279 (409)
                      ++|..+|++..+ .... +...|..++..+.+.|++++|..+|++..+.  .|+ .. .|..+...+.+.|++++|..+|
T Consensus        81 ~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~  157 (308)
T 2ond_A           81 DEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence            556666666555 2221 3445555555555566666666666665553  232 22 5555555566666666666666


Q ss_pred             HHHHHcCCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-C
Q 015329          280 GLMQRFGIEPDEVTYNLVIKGFC-RSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN-W  357 (409)
Q Consensus       280 ~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~  357 (409)
                      ++..+.+. .+...|........ ..|++++|..+|+...+.... +...|..++..+.+.|++++|..+|++.++.. +
T Consensus       158 ~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l  235 (308)
T 2ond_A          158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence            66655432 12333322222211 246666666666666554211 45556666666666666666666666666542 2


Q ss_pred             CC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          358 VP--SVDTISALLEGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       358 ~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      .|  ....|..++..+.+.|+.+.|..+++++.+..|+
T Consensus       236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence            33  3455666666666666666666666666666654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.52  E-value=1.9e-12  Score=116.16  Aligned_cols=300  Identities=9%  Similarity=-0.065  Sum_probs=200.6

Q ss_pred             HhcCCCchhHHHHHHHhhhCCCC--CChh--HHHHHHHH--HHhcCChHHHH-----------HHHHHhhhcCCCCCH--
Q 015329           90 LAGARRFDYIEHLLEHQKSLPQG--RREG--FIMRIMML--YGKAGMIKHAM-----------DTFYDMHLYGCKRTV--  150 (409)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~--~~~~l~~~--~~~~~~~~~a~-----------~~~~~m~~~~~~~~~--  150 (409)
                      +.+.+++++|..+++++...-..  .+..  .|-.++..  ..-.+.++.+.           +.++.+.......+.  
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l  101 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL  101 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence            35678888888888877643211  2222  22223222  22233344444           666665432211110  


Q ss_pred             --HhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C----
Q 015329          151 --KSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF----DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-P----  219 (409)
Q Consensus       151 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~----  219 (409)
                        ..+......+...|+++.|...+++......-.+    ...++..+...|...|+++.|+..+++..+.... +    
T Consensus       102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  181 (383)
T 3ulq_A          102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI  181 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence              1122255667788999999888876543211112    2456888899999999999999999988752111 1    


Q ss_pred             -CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC----CC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC-C
Q 015329          220 -DVITYTTLISAFYKDNRPEIGNGLWNLMVCKG----CF-PNLATFNVRIQHLVNKRRSWQANKLMGLMQRF----GI-E  288 (409)
Q Consensus       220 -~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~  288 (409)
                       ...+++.+...|...|++++|...+++..+..    .. ....++..+...|...|++++|...+++..+.    +. .
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~  261 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP  261 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence             24577888899999999999999998876531    11 11247888899999999999999999998762    32 3


Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCC---HhHHHHHHHHHHhCCCCCCH
Q 015329          289 PDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLMPNRKIYQTMIHYLCQEGD---FNLAYIMCKDSMKKNWVPSV  361 (409)
Q Consensus       289 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~  361 (409)
                      ....++..+...|.+.|++++|...+++..+.    +-......+..+...+...|+   +++|+.++++.  .......
T Consensus       262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~  339 (383)
T 3ulq_A          262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYADLE  339 (383)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--cCHHHHH
Confidence            34677888999999999999999999987654    111122335667777888888   77888887764  1222334


Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329          362 DTISALLEGLKKNNQPCKANTIMALVQRRV  391 (409)
Q Consensus       362 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  391 (409)
                      ..+..+...|...|++++|.+.+++..+..
T Consensus       340 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          340 DFAIDVAKYYHERKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            567778899999999999999999886543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.51  E-value=1.6e-12  Score=119.00  Aligned_cols=312  Identities=10%  Similarity=-0.029  Sum_probs=180.9

Q ss_pred             hhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCc---hhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcC
Q 015329           53 KLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRF---DYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAG  129 (409)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  129 (409)
                      .+.+.|++++|++.|+...+.+    +..++..+...+...|+.   ++|..+|+.....    +...+..|...+...+
T Consensus        12 ~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~   83 (452)
T 3e4b_A           12 EALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP   83 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred             HHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence            3455677777888777776654    233344444555556666   7777777776643    3333334444344443


Q ss_pred             -----ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCC---------------------------------------
Q 015329          130 -----MIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRD---------------------------------------  165 (409)
Q Consensus       130 -----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------------------------------------  165 (409)
                           ++++|++.|++..+.|. ++  .+..|...|...+.                                       
T Consensus        84 ~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~  160 (452)
T 3e4b_A           84 GATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH  160 (452)
T ss_dssp             -CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred             CCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence                 66777777777766542 22  33344444433222                                       


Q ss_pred             HHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CChh
Q 015329          166 LKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMG---ILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKD----NRPE  238 (409)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~----~~~~  238 (409)
                      .+.+..+++.....     +...+..+...|...|   +.++|+++|++..+.|.. +...+..+...|...    ++++
T Consensus       161 ~~~a~~~~~~a~~~-----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~  234 (452)
T 3e4b_A          161 LDDVERICKAALNT-----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK  234 (452)
T ss_dssp             HHHHHHHHHHHTTT-----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred             HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence            23333344332211     2336777777788888   888888888888887643 555555666666544    6788


Q ss_pred             hHHHHHHHHHhcCCCCCHhhHHHHHHH-H--HhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-----CHHHH
Q 015329          239 IGNGLWNLMVCKGCFPNLATFNVRIQH-L--VNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSG-----HLDMA  310 (409)
Q Consensus       239 ~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~a  310 (409)
                      +|...|+... .|   +...+..+-.. +  ...+++++|...|++..+.|   +...+..|...|. .|     ++++|
T Consensus       235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A  306 (452)
T 3e4b_A          235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA  306 (452)
T ss_dssp             HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred             HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence            8888888877 43   45555555555 3  45788888888888888776   5566666666666 45     88888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHH
Q 015329          311 KKVYSAMLGRRLMPNRKIYQTMIHYLCQ----EGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKK----NNQPCKANT  382 (409)
Q Consensus       311 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~  382 (409)
                      .+.|++.. .   -+...+..+...|..    ..++++|..+|++..+.|.   ......|...|..    ..+.++|..
T Consensus       307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~  379 (452)
T 3e4b_A          307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYV  379 (452)
T ss_dssp             HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred             HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence            88888776 3   366667777766665    3378888888888877762   3345555566654    457888888


Q ss_pred             HHHHHHhcCCCCCc
Q 015329          383 IMALVQRRVPHFSS  396 (409)
Q Consensus       383 ~~~~~~~~~~~~~~  396 (409)
                      .++...+.+.+...
T Consensus       380 ~~~~A~~~g~~~a~  393 (452)
T 3e4b_A          380 FSQLAKAQDTPEAN  393 (452)
T ss_dssp             HHHHHHTTCCHHHH
T ss_pred             HHHHHHHCCCHHHH
Confidence            88888877754433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.49  E-value=6.3e-11  Score=102.79  Aligned_cols=218  Identities=10%  Similarity=0.027  Sum_probs=143.5

Q ss_pred             HHHHHHHHHhhhcCCCCCHHhHHHHHHHHH-------ccCCH-------HHHHHHHHhcCccCCCCc-CHHHHHHHHHHH
Q 015329          132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLT-------ESRDL-------KAIQAFLMEVPEKFHIQF-DIFSFNIVIKAF  196 (409)
Q Consensus       132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~  196 (409)
                      ++|..+|++..... +-+...|..+...+.       +.|+.       +.|..+|++....  +.| +...|..++..+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--~~p~~~~~~~~~~~~~  109 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence            56666666666542 445556666666554       24664       6777777655431  123 345677777777


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH-hcCCHhH
Q 015329          197 CEMGILDKAYLVMVEMQKLGVKPDVI-TYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLV-NKRRSWQ  274 (409)
Q Consensus       197 ~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~~~  274 (409)
                      .+.|++++|.++|++..+.... +.. +|..++..+.+.|++++|..+|++..+.+ +.+...|........ ..|+.++
T Consensus       110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence            7778888888888877764322 232 67777777777788888888888777653 233444433332222 2588888


Q ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329          275 ANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR-LMP--NRKIYQTMIHYLCQEGDFNLAYIMCKD  351 (409)
Q Consensus       275 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~  351 (409)
                      |..+|+...+.... +...|..++..+.+.|++++|..+|++..... +.|  ....|..++..+.+.|+.++|..++++
T Consensus       188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~  266 (308)
T 2ond_A          188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            88888887765322 56777777788888888888888888887752 343  456777778877788888888888887


Q ss_pred             HHhC
Q 015329          352 SMKK  355 (409)
Q Consensus       352 m~~~  355 (409)
                      +.+.
T Consensus       267 a~~~  270 (308)
T 2ond_A          267 RFTA  270 (308)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.49  E-value=3.9e-12  Score=114.12  Aligned_cols=298  Identities=7%  Similarity=-0.068  Sum_probs=207.0

Q ss_pred             hhhcCChHHHHHHHHHhhcCC-CCCCc--cchHHHHHH--HHhcCCCchhHH-----------HHHHHhhhCCCCCCh--
Q 015329           54 LKAERDPEKLFQLFKANAHNR-IVIEN--KYAFEDTVS--RLAGARRFDYIE-----------HLLEHQKSLPQGRRE--  115 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~~li~--~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~--  115 (409)
                      ..+.++.++|..+++.+.+.- ....|  ...|-.++.  .....+.++.+.           ++++.+...+...+.  
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l  101 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL  101 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence            456789999999999986542 11122  223333322  122223334444           666666543221111  


Q ss_pred             --hHHHHHHHHHHhcCChHHHHHHHHHhhhc----CCCC-CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc----
Q 015329          116 --GFIMRIMMLYGKAGMIKHAMDTFYDMHLY----GCKR-TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF----  184 (409)
Q Consensus       116 --~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----  184 (409)
                        .++......+...|++++|.+.|++..+.    +-.+ ...++..+...|...|+++.|...+++...-..-.+    
T Consensus       102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  181 (383)
T 3ulq_A          102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI  181 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence              11223566788999999999999998753    1111 345788899999999999988888866543211111    


Q ss_pred             -CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCChhhHHHHHHHHHhc----CC-C
Q 015329          185 -DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-PD----VITYTTLISAFYKDNRPEIGNGLWNLMVCK----GC-F  253 (409)
Q Consensus       185 -~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~  253 (409)
                       ...+++.+...|...|++++|.+.|++..+.... .+    ..++..+...|...|++++|...+++..+.    +. +
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~  261 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP  261 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence             2457888999999999999999999988753111 11    247888999999999999999999998762    33 4


Q ss_pred             CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-C
Q 015329          254 PNLATFNVRIQHLVNKRRSWQANKLMGLMQRF----GIEPDEVTYNLVIKGFCRSGH---LDMAKKVYSAMLGRRLMP-N  325 (409)
Q Consensus       254 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p-~  325 (409)
                      ....++..+...|.+.|++++|...+++..+.    +-......+..+...|...|+   +++|..++++.   +..| .
T Consensus       262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~  338 (383)
T 3ulq_A          262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL  338 (383)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence            45677889999999999999999999988653    212123345677788888898   77777777765   2222 3


Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329          326 RKIYQTMIHYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~  354 (409)
                      ...+..+...|...|++++|...+++..+
T Consensus       339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44677889999999999999999998765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.49  E-value=3.7e-13  Score=116.80  Aligned_cols=166  Identities=11%  Similarity=-0.000  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhc-------CCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc------CCCCc
Q 015329          118 IMRIMMLYGKAGMIKHAMDTFYDMHLY-------GCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK------FHIQF  184 (409)
Q Consensus       118 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~  184 (409)
                      +..+...+...|++++|.++|+++.+.       ..+....++..+...+...|+++.|..++++....      ...+.
T Consensus        30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  109 (311)
T 3nf1_A           30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA  109 (311)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence            344444555555555555555554431       11112233444444444444444444444332211      01111


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhc------C
Q 015329          185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKL------GVKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCK------G  251 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~  251 (409)
                      ...++..+...|...|++++|.+.|++..+.      +..| ....+..+...+...|++++|..+++...+.      +
T Consensus       110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  189 (311)
T 3nf1_A          110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP  189 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence            2344555555666666666666666555432      1111 2233444555555555555555555554432      1


Q ss_pred             CC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 015329          252 CF-PNLATFNVRIQHLVNKRRSWQANKLMGLMQ  283 (409)
Q Consensus       252 ~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  283 (409)
                      .. ....++..+...|...|++++|...++++.
T Consensus       190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            11 122344445555555555555555555544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.48  E-value=1.6e-12  Score=112.70  Aligned_cols=243  Identities=11%  Similarity=0.018  Sum_probs=167.2

Q ss_pred             CHHhHHHHHHHHHccCCHHHHHHHHHhcCccC------CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------C
Q 015329          149 TVKSLNAALKVLTESRDLKAIQAFLMEVPEKF------HIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL------G  216 (409)
Q Consensus       149 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g  216 (409)
                      +..++..+...+...|+++.|..++++.....      ..+....++..+...|...|++++|...|++..+.      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            45678888889999999999999987765421      12234566888888999999999999999988763      2


Q ss_pred             C-CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc------CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc---
Q 015329          217 V-KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK------GC-FPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF---  285 (409)
Q Consensus       217 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---  285 (409)
                      - .....++..+...+...|++++|...+++..+.      +. +.....+..+...+...|++++|..+++++.+.   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            1 223567788888899999999999999888764      22 224566778888899999999999999988664   


Q ss_pred             ---CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-------CHHHHHHHHHHHHHcCCHhHHHH
Q 015329          286 ---GIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-------RLMP-------NRKIYQTMIHYLCQEGDFNLAYI  347 (409)
Q Consensus       286 ---~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p-------~~~~~~~li~~~~~~g~~~~a~~  347 (409)
                         +..| ...++..+...|...|++++|.+.++++.+.       ...+       ....+..+...+...+.+.++..
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  265 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG  265 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence               2223 3457788888899999999999999988753       1111       11222233334445556666666


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329          348 MCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP  392 (409)
Q Consensus       348 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  392 (409)
                      .++...... +.+..++..+..+|.+.|++++|.+.+++..+..+
T Consensus       266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            666655432 44567788899999999999999999999876543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.47  E-value=2.4e-11  Score=108.79  Aligned_cols=310  Identities=7%  Similarity=-0.081  Sum_probs=201.4

Q ss_pred             CCccchHHHHHHHH--hcCCCchhHHHHHHHhhhCCC--CCChh--HHHHHHHH--HHhcCChHHHH---------HHHH
Q 015329           77 IENKYAFEDTVSRL--AGARRFDYIEHLLEHQKSLPQ--GRREG--FIMRIMML--YGKAGMIKHAM---------DTFY  139 (409)
Q Consensus        77 ~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~--~~~~~--~~~~l~~~--~~~~~~~~~a~---------~~~~  139 (409)
                      .|+..+-..+-..|  ...+++++|..+++++.....  ..+..  +|-.++..  ..-.+.+..+.         +.++
T Consensus         7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~   86 (378)
T 3q15_A            7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE   86 (378)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence            45555555555555  778888888888887654211  11222  22333322  11122222222         5555


Q ss_pred             HhhhcCCCCCH----HhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc----CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 015329          140 DMHLYGCKRTV----KSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF----DIFSFNIVIKAFCEMGILDKAYLVMVE  211 (409)
Q Consensus       140 ~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~  211 (409)
                      .+.....+.+.    ..+......+...|+++.|...+++........+    ...++..+...|...|+++.|...+++
T Consensus        87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~  166 (378)
T 3q15_A           87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ  166 (378)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            55432211111    1223344556778999888888876543221112    245688888899999999999999988


Q ss_pred             HHhCC----C-CC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----CCC-CCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 015329          212 MQKLG----V-KP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCK----GCF-PNLATFNVRIQHLVNKRRSWQANKLMG  280 (409)
Q Consensus       212 m~~~g----~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~  280 (409)
                      ..+..    . .+ ...+++.+...|...|++++|...+++..+.    +.. ....++..+..+|...|++++|...++
T Consensus       167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~  246 (378)
T 3q15_A          167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ  246 (378)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            77521    1 11 2456778888999999999999999887653    111 123567788889999999999999999


Q ss_pred             HHHH-----cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCC---HhHHHHH
Q 015329          281 LMQR-----FGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR----LMPNRKIYQTMIHYLCQEGD---FNLAYIM  348 (409)
Q Consensus       281 ~~~~-----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~~~  348 (409)
                      +..+     .. +....++..+...|.+.|++++|...+++..+..    -......+..+...+...|+   +.+|+..
T Consensus       247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~  325 (378)
T 3q15_A          247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY  325 (378)
T ss_dssp             HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            8876     33 2236778888999999999999999999887642    12223345556666667777   7778777


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329          349 CKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQR  389 (409)
Q Consensus       349 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  389 (409)
                      +++.  .........+..+...|...|++++|.+.+++..+
T Consensus       326 ~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          326 FEKK--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhC--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7752  12223345667788999999999999999988764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.47  E-value=2.7e-12  Score=118.34  Aligned_cols=209  Identities=8%  Similarity=-0.103  Sum_probs=95.2

Q ss_pred             chhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHH
Q 015329           96 FDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMI-KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLM  174 (409)
Q Consensus        96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  174 (409)
                      ++++.+.++....... .+...+..+...|...|++ ++|++.|++..+.. +-+..+|..+...|...|++++|...|+
T Consensus        84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3444444444433322 2344445555555555555 55655555555443 2234455555555555555555555554


Q ss_pred             hcCccCCCCcCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCh
Q 015329          175 EVPEKFHIQFDIFSFNIVIKAFCEM---------GILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKD--------NRP  237 (409)
Q Consensus       175 ~~~~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--------~~~  237 (409)
                      +....   .|+...+..+...|...         |++++|++.|++..+.... +...|..+..+|...        |++
T Consensus       162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence            43322   23444444455555554         5555555555555443222 344444444444444        444


Q ss_pred             hhHHHHHHHHHhcCCC---CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 015329          238 EIGNGLWNLMVCKGCF---PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKK  312 (409)
Q Consensus       238 ~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  312 (409)
                      ++|+..|++..+.. +   .+...|..+..+|...|++++|...|++..+.... +...+..+...+...|++++|.+
T Consensus       238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444431 1   23444444444444444444444444444433211 23334444444444444444443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.47  E-value=3.3e-11  Score=110.30  Aligned_cols=308  Identities=8%  Similarity=-0.038  Sum_probs=207.5

Q ss_pred             ChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchh---HHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHH
Q 015329           59 DPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDY---IEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAM  135 (409)
Q Consensus        59 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  135 (409)
                      ++++|++.|+...+.+    +...+..+...|...+..++   +.+.+......+   .......|...|...+.++.+.
T Consensus        89 ~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~  161 (452)
T 3e4b_A           89 EHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL  161 (452)
T ss_dssp             HHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred             CHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence            5667777777776655    22255556666655544333   333333333222   2344555677777777555555


Q ss_pred             HHHHHhhhcCCCCCHHhHHHHHHHHHccC---CHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhc----CChhHHHHH
Q 015329          136 DTFYDMHLYGCKRTVKSLNAALKVLTESR---DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEM----GILDKAYLV  208 (409)
Q Consensus       136 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~  208 (409)
                      +....+...-...+...+..+...|...|   +.+++..+|+...+. | .++...+..+...|...    +++++|+++
T Consensus       162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~  239 (452)
T 3e4b_A          162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR-G-TVTAQRVDSVARVLGDATLGTPDEKTAQAL  239 (452)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence            54333322222334448888999999999   889999999776544 3 44555556777777655    699999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHH-H--HHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-----CHhHHHHHHH
Q 015329          209 MVEMQKLGVKPDVITYTTLISA-F--YKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR-----RSWQANKLMG  280 (409)
Q Consensus       209 ~~~m~~~g~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~  280 (409)
                      |++.. .   -+...+..+... +  ...+++++|...|++..+.|   +...+..+-..|. .|     ++++|...|+
T Consensus       240 ~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~  311 (452)
T 3e4b_A          240 LEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE  311 (452)
T ss_dssp             HHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred             HHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence            99988 3   255666667666 3  46899999999999999887   6777777777777 55     9999999999


Q ss_pred             HHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHH
Q 015329          281 LMQRFGIEPDEVTYNLVIKGFCR----SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ----EGDFNLAYIMCKDS  352 (409)
Q Consensus       281 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m  352 (409)
                      +.. .|   +...+..|...|..    ..++++|...|+...+.|.   ......|...|..    ..+.++|..+|+..
T Consensus       312 ~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  384 (452)
T 3e4b_A          312 KAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLA  384 (452)
T ss_dssp             TTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred             HHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            888 43   56677777777766    3499999999999988764   3455666666664    45899999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329          353 MKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV  391 (409)
Q Consensus       353 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  391 (409)
                      .+.|. ++.......+......++.++|.++.++..+..
T Consensus       385 ~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~  422 (452)
T 3e4b_A          385 KAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAAR  422 (452)
T ss_dssp             HTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence            98873 333322222333333446778888887766543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.47  E-value=2.7e-12  Score=118.34  Aligned_cols=192  Identities=10%  Similarity=-0.002  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329          186 IFSFNIVIKAFCEMGIL-DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ  264 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  264 (409)
                      ...+..+...|...|++ ++|++.|++..+.... +...|..+...|...|++++|...|+...+.  .|+...+..+..
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~  178 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM  178 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence            34444444444444454 5555554444443221 3444444444444555555555555444443  233444444444


Q ss_pred             HHHhc---------CCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCC--CC
Q 015329          265 HLVNK---------RRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS--------GHLDMAKKVYSAMLGRRLM--PN  325 (409)
Q Consensus       265 ~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~--p~  325 (409)
                      .|...         |++++|...+++..+.... +...|..+..+|...        |++++|.+.|++..+....  -+
T Consensus       179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  257 (474)
T 4abn_A          179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN  257 (474)
T ss_dssp             HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence            44444         5555555555555444221 344444444445444        4555555555555443210  14


Q ss_pred             HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 015329          326 RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANT  382 (409)
Q Consensus       326 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  382 (409)
                      ...|..+..+|...|++++|.+.|++.++.. +.+...+..+..++...|++++|.+
T Consensus       258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          258 PDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555544432 2333444444455555555554443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.44  E-value=1.9e-11  Score=97.18  Aligned_cols=167  Identities=10%  Similarity=-0.105  Sum_probs=93.3

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 015329          225 TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS  304 (409)
Q Consensus       225 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  304 (409)
                      ..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...
T Consensus        12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~   89 (186)
T 3as5_A           12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQV   89 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHh
Confidence            333444444444444444444443321 22344444555555555555555555555544421 2444555555556666


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 015329          305 GHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIM  384 (409)
Q Consensus       305 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  384 (409)
                      |++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+
T Consensus        90 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           90 QKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            666666666666554422 245556666666666677777777666666543 345566667777777777777777777


Q ss_pred             HHHHhcCCCCC
Q 015329          385 ALVQRRVPHFS  395 (409)
Q Consensus       385 ~~~~~~~~~~~  395 (409)
                      +++.+..|...
T Consensus       168 ~~~~~~~~~~~  178 (186)
T 3as5_A          168 KKANELDEGAS  178 (186)
T ss_dssp             HHHHHHHHCCC
T ss_pred             HHHHHcCCCch
Confidence            77766655443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.42  E-value=1.8e-10  Score=102.79  Aligned_cols=302  Identities=11%  Similarity=-0.016  Sum_probs=197.6

Q ss_pred             HHHHHHHhcCCCchhHHHHHHHhhhCCCCCChh----HHHHHHHHHHhcCChHHHHHHHHHhhhcCC-CCCH----HhHH
Q 015329           84 EDTVSRLAGARRFDYIEHLLEHQKSLPQGRREG----FIMRIMMLYGKAGMIKHAMDTFYDMHLYGC-KRTV----KSLN  154 (409)
Q Consensus        84 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~  154 (409)
                      ......+...|++++|...++.........+..    .+..+...+...|++++|.+.+++.....- ..+.    .++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            334456667899999999999877654332322    345566778889999999999988765321 1121    2356


Q ss_pred             HHHHHHHccCCHHHHHHHHHhcCccC---CCC--c-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C--CHHHH
Q 015329          155 AALKVLTESRDLKAIQAFLMEVPEKF---HIQ--F-DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK--P--DVITY  224 (409)
Q Consensus       155 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~--~~~~~  224 (409)
                      .+...+...|+++.|...+++.....   +..  | ....+..+...+...|++++|...+++.......  +  ...++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            67778888899988888887654432   221  2 2345666778888889999999998888753221  1  23456


Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHhcCCCCC-HhhHH-----HHHHHHHhcCCHhHHHHHHHHHHHcCCCc---CHHHHH
Q 015329          225 TTLISAFYKDNRPEIGNGLWNLMVCKGCFPN-LATFN-----VRIQHLVNKRRSWQANKLMGLMQRFGIEP---DEVTYN  295 (409)
Q Consensus       225 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~  295 (409)
                      ..+...+...|++++|...+++.......++ ...+.     ..+..+...|++++|...+++.......+   ....+.
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  257 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  257 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence            6777788888999999988888765321111 11121     22344678899999988888876543221   133456


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329          296 LVIKGFCRSGHLDMAKKVYSAMLGR----RLMPNR-KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEG  370 (409)
Q Consensus       296 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~  370 (409)
                      .+...+...|++++|...++.....    |..++. ..+..+..++...|+.++|...+++.....  +.    .-.+..
T Consensus       258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~~  331 (373)
T 1hz4_A          258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFISH  331 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHHH
Confidence            6777888889999998888877543    222222 255666777888889999988888877642  10    112244


Q ss_pred             HHhCCChHHHHHHHHHHHhcCCC
Q 015329          371 LKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       371 ~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      +...|  +....+++.+....+.
T Consensus       332 ~~~~g--~~~~~ll~~~~~~~~~  352 (373)
T 1hz4_A          332 FVIEG--EAMAQQLRQLIQLNTL  352 (373)
T ss_dssp             HHTTH--HHHHHHHHHHHHTTCS
T ss_pred             HHHcc--HHHHHHHHHHHhCCCC
Confidence            55555  6677777777777654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.41  E-value=1.4e-10  Score=103.46  Aligned_cols=266  Identities=11%  Similarity=-0.012  Sum_probs=173.1

Q ss_pred             hhhcCChHHHHHHHHHhhcCCCCCCccc----hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCC-Ch----hHHHHHHHH
Q 015329           54 LKAERDPEKLFQLFKANAHNRIVIENKY----AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGR-RE----GFIMRIMML  124 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~l~~~  124 (409)
                      ....|++++|.+.++......+ ..+..    ++..+...+...|++++|.+.+++........ +.    ..+..+...
T Consensus        24 ~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  102 (373)
T 1hz4_A           24 AINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI  102 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            3356888889998888776541 11111    35556677778889999888888776432111 11    224456777


Q ss_pred             HHhcCChHHHHHHHHHhhhc----CCC--C-CHHhHHHHHHHHHccCCHHHHHHHHHhcCccC---CCCcCHHHHHHHHH
Q 015329          125 YGKAGMIKHAMDTFYDMHLY----GCK--R-TVKSLNAALKVLTESRDLKAIQAFLMEVPEKF---HIQFDIFSFNIVIK  194 (409)
Q Consensus       125 ~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~ll~  194 (409)
                      +...|++++|.+.+++..+.    +..  | ...++..+...+...|+++.|...+++.....   +......++..+..
T Consensus       103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  182 (373)
T 1hz4_A          103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ  182 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence            88889999999888887653    211  2 23456667778888899988888887654332   21112356777788


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHHcCChhhHHHHHHHHHhcCCCC---CHhhHHHHHHH
Q 015329          195 AFCEMGILDKAYLVMVEMQKLGVKPD--VITYT----TLISAFYKDNRPEIGNGLWNLMVCKGCFP---NLATFNVRIQH  265 (409)
Q Consensus       195 ~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~  265 (409)
                      .+...|++++|...+++.......++  .....    ..+..+...|++++|...++........+   ....+..+...
T Consensus       183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~  262 (373)
T 1hz4_A          183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA  262 (373)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence            88888999999988888765311111  11111    22344668888999888888876543211   12245667778


Q ss_pred             HHhcCCHhHHHHHHHHHHHc----CCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          266 LVNKRRSWQANKLMGLMQRF----GIEPDE-VTYNLVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       266 ~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      +...|++++|...++.....    |..++. ..+..+..++...|+.++|...+++....
T Consensus       263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  322 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            88889999988888877542    222222 25566677788888899998888887754

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.41  E-value=6.5e-11  Score=94.01  Aligned_cols=163  Identities=15%  Similarity=0.050  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLV  267 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~  267 (409)
                      .+..+...+...|++++|.+.|+++.+.... +..++..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            3444555555566666666666555543322 44555555555666666666666666655542 334555555666666


Q ss_pred             hcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 015329          268 NKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYI  347 (409)
Q Consensus       268 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  347 (409)
                      ..|++++|...++++.+... .+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|..
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence            66666666666666655432 2455556666666666666666666666655432 245566666666666666666666


Q ss_pred             HHHHHHh
Q 015329          348 MCKDSMK  354 (409)
Q Consensus       348 ~~~~m~~  354 (409)
                      .+++..+
T Consensus       166 ~~~~~~~  172 (186)
T 3as5_A          166 HFKKANE  172 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.40  E-value=5.5e-11  Score=106.42  Aligned_cols=298  Identities=6%  Similarity=-0.054  Sum_probs=203.5

Q ss_pred             hhhcCChHHHHHHHHHhhcCC-CCC--CccchHHHHHHH--HhcCCCchhHH---------HHHHHhhhCCCCCCh----
Q 015329           54 LKAERDPEKLFQLFKANAHNR-IVI--ENKYAFEDTVSR--LAGARRFDYIE---------HLLEHQKSLPQGRRE----  115 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~~li~~--~~~~~~~~~a~---------~~~~~~~~~~~~~~~----  115 (409)
                      ....++.++|.++++.+.+.- ...  ++...|-.++..  ..-.+.++.+.         +.++.+.......+.    
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~  101 (378)
T 3q15_A           22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKY  101 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHH
Confidence            356789999999999875432 111  222333333322  12223333333         666666533221111    


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-CC----CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCC----Cc-C
Q 015329          116 GFIMRIMMLYGKAGMIKHAMDTFYDMHLYGC-KR----TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHI----QF-D  185 (409)
Q Consensus       116 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~-~  185 (409)
                      .++......+...|++++|++.|++..+... .+    ...++..+...|...|+++.|...+++...-..-    .+ .
T Consensus       102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  181 (378)
T 3q15_A          102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT  181 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence            1223345567899999999999999865321 12    2457888999999999999888888655432111    11 2


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----CCCCCH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKL----GVK-PDVITYTTLISAFYKDNRPEIGNGLWNLMVCK----GCFPNL  256 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~  256 (409)
                      ..+++.+...|...|++++|.+.|++..+.    +.. ....++..+...|...|++++|...+++..+.    +.+...
T Consensus       182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  261 (378)
T 3q15_A          182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP  261 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence            557889999999999999999999988752    111 12356788889999999999999999998761    223347


Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC----CcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHH
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGI----EPDEVTYNLVIKGFCRSGH---LDMAKKVYSAMLGRRLMP-NRKI  328 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p-~~~~  328 (409)
                      .++..+...|.+.|++++|...+++..+...    ......+..+...|...|+   +++|..+++.   .+..| ....
T Consensus       262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~  338 (378)
T 3q15_A          262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEAC  338 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHH
Confidence            7888899999999999999999999876422    2224456666677777888   7777777775   22222 2345


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329          329 YQTMIHYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       329 ~~~li~~~~~~g~~~~a~~~~~~m~~  354 (409)
                      +..+...|...|++++|...|++..+
T Consensus       339 ~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          339 ARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            67888999999999999999998764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.37  E-value=6.6e-11  Score=113.63  Aligned_cols=166  Identities=11%  Similarity=-0.035  Sum_probs=134.9

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329          185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ  264 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  264 (409)
                      +..+|+.+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|+..|++..+.. +-+...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            3667888888888999999999999888876433 57788888888888999999999888888764 445778888888


Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 015329          265 HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL  344 (409)
Q Consensus       265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  344 (409)
                      +|.+.|++++|++.|++..+.... +...|+.+..+|.+.|++++|++.|++..+.... +...+..+..++...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence            888899999999999888876433 5778888888888999999999999888876433 56778888888888999888


Q ss_pred             HHHHHHHHHh
Q 015329          345 AYIMCKDSMK  354 (409)
Q Consensus       345 a~~~~~~m~~  354 (409)
                      |.+.+++.++
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.35  E-value=9.6e-11  Score=112.51  Aligned_cols=167  Identities=10%  Similarity=-0.051  Sum_probs=149.0

Q ss_pred             CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 015329          220 DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIK  299 (409)
Q Consensus       220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~  299 (409)
                      +..+|+.+...+.+.|++++|+..|++..+.. +-+..+|..+..+|.+.|++++|+..|++..+.... +...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            46789999999999999999999999999874 446789999999999999999999999999887533 6889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 015329          300 GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCK  379 (409)
Q Consensus       300 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~  379 (409)
                      +|.+.|++++|++.|++..+.... +...|+.+..+|...|++++|++.|++.++.. +-+...+..+..++...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence            999999999999999999887433 67889999999999999999999999998865 5567899999999999999999


Q ss_pred             HHHHHHHHHhc
Q 015329          380 ANTIMALVQRR  390 (409)
Q Consensus       380 a~~~~~~~~~~  390 (409)
                      |.+.++++.+.
T Consensus       164 A~~~~~kal~l  174 (723)
T 4gyw_A          164 YDERMKKLVSI  174 (723)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999887653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.33  E-value=2.4e-10  Score=94.34  Aligned_cols=200  Identities=9%  Similarity=0.001  Sum_probs=157.4

Q ss_pred             cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 015329          184 FDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRI  263 (409)
Q Consensus       184 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  263 (409)
                      .|...+......+...|++++|++.|++..+....++...+..+..++...|++++|+..++...+.. +.+...|..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            35678888999999999999999999999987654677788779999999999999999999999864 44677889999


Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 015329          264 QHLVNKRRSWQANKLMGLMQRFGIEPDE-------VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN---RKIYQTMI  333 (409)
Q Consensus       264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li  333 (409)
                      .+|...|++++|...+++..+.... +.       ..|..+...+...|++++|.+.|++..+.  .|+   ...+..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            9999999999999999999887432 44       45777888889999999999999999876  554   45677777


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          334 HYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       334 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      .+|...|     ...++++...+ ..+...|....  ....+.+++|...+++..+..|...
T Consensus       161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~  214 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRT  214 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCH
Confidence            7776544     34455555443 33455554443  3345678999999999999987663

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.32  E-value=7.3e-10  Score=91.44  Aligned_cols=197  Identities=9%  Similarity=-0.091  Sum_probs=152.9

Q ss_pred             CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 015329          147 KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTT  226 (409)
Q Consensus       147 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~  226 (409)
                      ..++..+......+...|+++.|...|++...... +++...+..+..++...|++++|++.|++..+.... +...|..
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~   81 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIG   81 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHH
Confidence            34668888999999999999999999987765421 257777777999999999999999999999987544 6778999


Q ss_pred             HHHHHHHcCChhhHHHHHHHHHhcCCCCCH-------hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC---HHHHHH
Q 015329          227 LISAFYKDNRPEIGNGLWNLMVCKGCFPNL-------ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD---EVTYNL  296 (409)
Q Consensus       227 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~  296 (409)
                      +...+...|++++|+..+++..+.. +.+.       ..|..+...+...|++++|...|++..+.  .|+   ...+..
T Consensus        82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~  158 (228)
T 4i17_A           82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS  158 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence            9999999999999999999998864 3344       45778888899999999999999999876  454   456677


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329          297 VIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN  356 (409)
Q Consensus       297 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  356 (409)
                      +...|...|     ..+++.+...+.. +...|.....  ...+.+++|...+++.++..
T Consensus       159 l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          159 LGVLFYNNG-----ADVLRKATPLASS-NKEKYASEKA--KADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence            777775544     4455665555322 4445544433  34567899999999988763

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.32  E-value=1.6e-09  Score=91.67  Aligned_cols=60  Identities=15%  Similarity=0.069  Sum_probs=26.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329          190 NIVIKAFCEMGILDKAYLVMVEMQKLGV-KPDVITYTTLISAFYKDNRPEIGNGLWNLMVC  249 (409)
Q Consensus       190 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  249 (409)
                      ..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3444444444555555555544443332 11333444444444444444444444444444

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.30  E-value=5.3e-11  Score=101.46  Aligned_cols=228  Identities=11%  Similarity=0.012  Sum_probs=155.3

Q ss_pred             ccCCHHHHHHHHHhcCcc------CCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCC-CCHHHHHHHH
Q 015329          162 ESRDLKAIQAFLMEVPEK------FHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL------GVK-PDVITYTTLI  228 (409)
Q Consensus       162 ~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~-~~~~~~~~ll  228 (409)
                      ..|+++.|..++++....      ...+....++..+...|...|++++|...|++..+.      +-. ....++..+.
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            455665555555443321      111234667888999999999999999999998864      212 2356788889


Q ss_pred             HHHHHcCChhhHHHHHHHHHhc------C-CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc------CCCc-CHHHH
Q 015329          229 SAFYKDNRPEIGNGLWNLMVCK------G-CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF------GIEP-DEVTY  294 (409)
Q Consensus       229 ~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~  294 (409)
                      ..+...|++++|...+.+..+.      . .+....++..+...|...|++++|...+++..+.      +..| ...++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999999998764      1 1234677888899999999999999999998765      2122 35678


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHhH------HHHHHHHHHhCCCCCC
Q 015329          295 NLVIKGFCRSGHLDMAKKVYSAMLGR-------RLMP-NRKIYQTMIHYLCQEGDFNL------AYIMCKDSMKKNWVPS  360 (409)
Q Consensus       295 ~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p-~~~~~~~li~~~~~~g~~~~------a~~~~~~m~~~~~~~~  360 (409)
                      ..+...|...|++++|...+++..+.       ...+ ....+..+...+...+....      +...++.... ..+..
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  251 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV  251 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence            88899999999999999999988753       1122 22233333333333333222      2222222111 11233


Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329          361 VDTISALLEGLKKNNQPCKANTIMALVQRR  390 (409)
Q Consensus       361 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  390 (409)
                      ..++..+...|...|++++|.+++++..+.
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            457888889999999999999999988764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.27  E-value=1.1e-10  Score=99.42  Aligned_cols=123  Identities=10%  Similarity=-0.024  Sum_probs=60.5

Q ss_pred             hcCCCchhHHHHHHHhhhC-------CCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc------CC-CCCHHhHHHH
Q 015329           91 AGARRFDYIEHLLEHQKSL-------PQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLY------GC-KRTVKSLNAA  156 (409)
Q Consensus        91 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~l  156 (409)
                      ...|++++|+..+++....       ..+.....+..+...|...|++++|++.|++..+.      +- +....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3556677666666665431       11122445556667777777777777777766542      11 1122344455


Q ss_pred             HHHHHccCCHHHHHHHHHhcCccC-----C-CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015329          157 LKVLTESRDLKAIQAFLMEVPEKF-----H-IQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQ  213 (409)
Q Consensus       157 l~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  213 (409)
                      ...+...|+++.|..++++.....     . .+....++..+...|...|++++|.+.|++..
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  154 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL  154 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            555555555555555554432220     0 01123334444444445555555555444444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.24  E-value=5.1e-08  Score=92.69  Aligned_cols=211  Identities=10%  Similarity=-0.028  Sum_probs=125.0

Q ss_pred             HHHHHHHhcCChhHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---------CCCC-----
Q 015329          191 IVIKAFCEMGILDKAY-LVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKG---------CFPN-----  255 (409)
Q Consensus       191 ~ll~~~~~~g~~~~a~-~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---------~~~~-----  255 (409)
                      ..+..+...|+.++|. ++|++..... +.+...|-..+...-+.|+++.|..+|+.+.+..         -.|+     
T Consensus       348 ~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~  426 (679)
T 4e6h_A          348 NMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI  426 (679)
T ss_dssp             HHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence            3333344556666665 7777766532 2244455566666667777777777777766531         0121     


Q ss_pred             -------HhhHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCH
Q 015329          256 -------LATFNVRIQHLVNKRRSWQANKLMGLMQRF-GIEPDEVTYNLVIKGFCRS-GHLDMAKKVYSAMLGRRLMPNR  326 (409)
Q Consensus       256 -------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~  326 (409)
                             ...|...+....+.|+.+.|..+|....+. +. .....|...+..-.+. ++.+.|..+|+...+. ..-+.
T Consensus       427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~  504 (679)
T 4e6h_A          427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDG  504 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCH
T ss_pred             hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCch
Confidence                   235666666666677777777777777664 21 1222332222222233 3477777777777665 22245


Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 015329          327 KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP--SVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKS  404 (409)
Q Consensus       327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  404 (409)
                      ..+...++.....|+.+.|..+|+..+...-.+  ....|..++..-.+.|+.+.+.++.+++.+..|+.+.  ...+.+
T Consensus       505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~--~~~f~~  582 (679)
T 4e6h_A          505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK--LEEFTN  582 (679)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH--HHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH--HHHHHH
Confidence            556666776677777888888887776653211  3356777777777778888888888888777765432  444444


Q ss_pred             hh
Q 015329          405 IL  406 (409)
Q Consensus       405 ~~  406 (409)
                      .|
T Consensus       583 ry  584 (679)
T 4e6h_A          583 KY  584 (679)
T ss_dssp             HT
T ss_pred             Hh
Confidence            44

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.23  E-value=2.7e-08  Score=94.52  Aligned_cols=341  Identities=9%  Similarity=-0.022  Sum_probs=207.6

Q ss_pred             ChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCC---chhHHHHHHHhhhCC-CCCChhHHHHHH
Q 015329           47 EPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARR---FDYIEHLLEHQKSLP-QGRREGFIMRIM  122 (409)
Q Consensus        47 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~  122 (409)
                      |...+..+.+.++.+.+..+|+.+...-  +.+...|...+..-.+.|.   ++.+..+|+...... ..++..+|...+
T Consensus        69 W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl  146 (679)
T 4e6h_A           69 YVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYI  146 (679)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            4455555666678888888888887774  4556667777777778888   889999999887654 135677887777


Q ss_pred             HHHHhcCCh--------HHHHHHHHHhhh-cCC-CCC-HHhHHHHHHHHHc---------cCCHHHHHHHHHhcCccCCC
Q 015329          123 MLYGKAGMI--------KHAMDTFYDMHL-YGC-KRT-VKSLNAALKVLTE---------SRDLKAIQAFLMEVPEKFHI  182 (409)
Q Consensus       123 ~~~~~~~~~--------~~a~~~~~~m~~-~~~-~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~  182 (409)
                      ....+.++.        +...++|+.... .|. .++ ...|...+.....         .++.+.+..+|+....- ..
T Consensus       147 ~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~  225 (679)
T 4e6h_A          147 TYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PM  225 (679)
T ss_dssp             HHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CC
T ss_pred             HHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC-cc
Confidence            666555543        334467776543 455 453 4677777765542         23457788888776531 11


Q ss_pred             CcCHHHHHH---HHHHHH----------hcCChhHHHHHHHH--------------------------------------
Q 015329          183 QFDIFSFNI---VIKAFC----------EMGILDKAYLVMVE--------------------------------------  211 (409)
Q Consensus       183 ~~~~~~~~~---ll~~~~----------~~g~~~~a~~~~~~--------------------------------------  211 (409)
                      ..-..+|..   +.....          ...+++.|...+.+                                      
T Consensus       226 ~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW  305 (679)
T 4e6h_A          226 DCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIW  305 (679)
T ss_dssp             SSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHH
Confidence            111222211   111100          00111222222222                                      


Q ss_pred             -----------------------------HHhCCCCCCHHHHHHHHHHHHHcCChhhHH-HHHHHHHhcCCCCCHhhHHH
Q 015329          212 -----------------------------MQKLGVKPDVITYTTLISAFYKDNRPEIGN-GLWNLMVCKGCFPNLATFNV  261 (409)
Q Consensus       212 -----------------------------m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~  261 (409)
                                                   ...... -....|-..+..+...|+.++|. .+|+..... ++.+...|-.
T Consensus       306 ~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~  383 (679)
T 4e6h_A          306 LEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFS  383 (679)
T ss_dssp             HHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred             HHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence                                         221110 12223333344445567777786 888887764 3455666677


Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHcCC---------CcC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          262 RIQHLVNKRRSWQANKLMGLMQRFGI---------EPD------------EVTYNLVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       262 ll~~~~~~~~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      .+....+.|++++|.++|+.+.+...         .|+            ...|...+....+.|+.+.|..+|....+.
T Consensus       384 ~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          384 LSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            77778888888888888888875310         131            235677777777788888899999888776


Q ss_pred             CCCCCHHHHHHHHHHHHHc-CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          321 RLMPNRKIYQTMIHYLCQE-GDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       321 ~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      -.......|...+..-.+. ++.+.|.++|+..++. ++-+...+...+......|+.+.|..+|+...+..++
T Consensus       464 ~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          464 KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD  536 (679)
T ss_dssp             GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred             cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence            1112334444333333333 4588888888888775 4556666777788788888899999999988887764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.23  E-value=1.4e-09  Score=81.18  Aligned_cols=132  Identities=11%  Similarity=0.059  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329          258 TFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLC  337 (409)
Q Consensus       258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  337 (409)
                      .|..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|..+++++...+. .+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence            345555666666666666666666655432 2455566666666666777777777766665432 24556666666777


Q ss_pred             HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 015329          338 QEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVP  392 (409)
Q Consensus       338 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  392 (409)
                      ..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+..|
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            7777777777777766543 34566666677777777777777777777766554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.22  E-value=1.4e-08  Score=86.00  Aligned_cols=61  Identities=7%  Similarity=-0.168  Sum_probs=27.7

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHhcCC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329          225 TTLISAFYKDNRPEIGNGLWNLMVCKGC-FPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       225 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  285 (409)
                      ..+..++...|++++|++++.+....|- .-+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~  165 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA  165 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3444444444555555555544433321 123344444444555555555555555554443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.18  E-value=1.3e-09  Score=93.58  Aligned_cols=198  Identities=11%  Similarity=0.017  Sum_probs=139.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChhhHHHHHHHHHhc----CCCC-CHhhHHHH
Q 015329          193 IKAFCEMGILDKAYLVMVEMQKL----GVKPD-VITYTTLISAFYKDNRPEIGNGLWNLMVCK----GCFP-NLATFNVR  262 (409)
Q Consensus       193 l~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l  262 (409)
                      ...|...|++++|.+.|.+..+.    |-.++ ..+|+.+..+|.+.|++++|+..+++..+.    |-.. -..+++.+
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  123 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45677888999998888877652    21111 467888888898999999998888877653    1110 13577888


Q ss_pred             HHHHHhc-CCHhHHHHHHHHHHHcCCCc-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHH
Q 015329          263 IQHLVNK-RRSWQANKLMGLMQRFGIEP-D----EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNR------KIYQ  330 (409)
Q Consensus       263 l~~~~~~-~~~~~a~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~  330 (409)
                      ...|... |++++|+..|++..+..... +    ..++..+...|.+.|++++|...|++..+.......      ..|.
T Consensus       124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  203 (292)
T 1qqe_A          124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (292)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            8888886 99999999999886542110 1    356788889999999999999999998876433221      2567


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH--hCCChHHHHHHHHHHHhcCC
Q 015329          331 TMIHYLCQEGDFNLAYIMCKDSMKKNWVPSV------DTISALLEGLK--KNNQPCKANTIMALVQRRVP  392 (409)
Q Consensus       331 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~  392 (409)
                      .+..++...|++++|...|++.++.  .|+.      ..+..++.++.  ..+++++|++.++.+.+..|
T Consensus       204 ~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~  271 (292)
T 1qqe_A          204 KKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK  271 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence            7788888999999999999987764  2321      23445566664  35668888888876665544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.17  E-value=2.5e-09  Score=91.93  Aligned_cols=164  Identities=9%  Similarity=-0.072  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHHc-CChhhHHHHHHHHHhcCCC-CC----H
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGV---KP--DVITYTTLISAFYKD-NRPEIGNGLWNLMVCKGCF-PN----L  256 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~---~~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~-~~----~  256 (409)
                      +|+.+...|.+.|++++|+..|++..+...   .+  -..+++.+...|... |++++|+..|++..+.... .+    .
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~  158 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence            344444444444444444444444432110   00  023444555555553 5555555555554432100 00    2


Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDE------VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN-----  325 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----  325 (409)
                      .++..+...+.+.|++++|...|++..+.......      ..|..+..++...|++++|...|++..+.  .|+     
T Consensus       159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~  236 (292)
T 1qqe_A          159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR  236 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence            34555566666666666666666666554322111      13455555566666666666666665543  121     


Q ss_pred             -HHHHHHHHHHHH--HcCCHhHHHHHHHHHH
Q 015329          326 -RKIYQTMIHYLC--QEGDFNLAYIMCKDSM  353 (409)
Q Consensus       326 -~~~~~~li~~~~--~~g~~~~a~~~~~~m~  353 (409)
                       ...+..++.+|.  ..+++++|...|+.+.
T Consensus       237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence             112333444443  2345666666655443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.15  E-value=4.5e-09  Score=78.29  Aligned_cols=127  Identities=12%  Similarity=0.086  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329          189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN  268 (409)
Q Consensus       189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  268 (409)
                      |..+...+...|++++|..+|+++.+.+.. +...+..+...+...|++++|...++.+...+ +.+...+..+...+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence            444555555556666666666555543322 34445555555555555555555555555442 2234444445555555


Q ss_pred             cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329          269 KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAML  318 (409)
Q Consensus       269 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  318 (409)
                      .|++++|...++++.+... .+...+..+...+.+.|++++|...++++.
T Consensus        82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            5555555555555544321 133444444455555555555555555444

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.11  E-value=4.2e-09  Score=88.83  Aligned_cols=167  Identities=11%  Similarity=0.017  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CCCHhhHH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD---VITYTTLISAFYKDNRPEIGNGLWNLMVCKGC--FPNLATFN  260 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~  260 (409)
                      ...+-.+...+.+.|++++|+..|+++.+.... +   ...+..+..++.+.|++++|...|+...+...  +.....+.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            344444555555555566666555555553221 1   34445555555555555555555555555320  11123344


Q ss_pred             HHHHHHHh--------cCCHhHHHHHHHHHHHcCCCcCHHH-----------------HHHHHHHHHhcCCHHHHHHHHH
Q 015329          261 VRIQHLVN--------KRRSWQANKLMGLMQRFGIEPDEVT-----------------YNLVIKGFCRSGHLDMAKKVYS  315 (409)
Q Consensus       261 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~p~~~~-----------------~~~li~~~~~~g~~~~a~~~~~  315 (409)
                      .+..++..        .|++++|...|+++.+.... +...                 +..+...|.+.|++++|...|+
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  172 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE  172 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            44445555        55566666666655544211 1111                 1334444555555555555555


Q ss_pred             HHHhCCCC-C-CHHHHHHHHHHHHHc----------CCHhHHHHHHHHHHh
Q 015329          316 AMLGRRLM-P-NRKIYQTMIHYLCQE----------GDFNLAYIMCKDSMK  354 (409)
Q Consensus       316 ~m~~~~~~-p-~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~  354 (409)
                      .+.+.... + ....+..+..+|...          |++++|...|+++++
T Consensus       173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~  223 (261)
T 3qky_A          173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ  223 (261)
T ss_dssp             HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence            55543111 0 123344444444433          455555555555544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.09  E-value=1.1e-08  Score=86.21  Aligned_cols=174  Identities=6%  Similarity=-0.013  Sum_probs=138.7

Q ss_pred             CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC---HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-Cc-CHHHH
Q 015329          220 DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN---LATFNVRIQHLVNKRRSWQANKLMGLMQRFGI-EP-DEVTY  294 (409)
Q Consensus       220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~~  294 (409)
                      +...+-.+...+.+.|++++|...|+.+.+.. +.+   ...+..+..+|.+.|++++|...|++..+... .| ....+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            56667777888999999999999999999864 223   67788889999999999999999999988643 12 24567


Q ss_pred             HHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHHcCCHhHHHHHH
Q 015329          295 NLVIKGFCR--------SGHLDMAKKVYSAMLGRRLMPNRKIY-----------------QTMIHYLCQEGDFNLAYIMC  349 (409)
Q Consensus       295 ~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~a~~~~  349 (409)
                      ..+..++..        .|++++|...|+++.+.... +....                 ..+...|...|++++|...|
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  171 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY  171 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            778888888        99999999999999876322 22222                 45678889999999999999


Q ss_pred             HHHHhCCC--CCCHHHHHHHHHHHHhC----------CChHHHHHHHHHHHhcCCCCC
Q 015329          350 KDSMKKNW--VPSVDTISALLEGLKKN----------NQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       350 ~~m~~~~~--~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      +++++..-  ......+..+..+|...          |++++|...++++.+..|+..
T Consensus       172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP  229 (261)
T ss_dssp             HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence            99987531  11346777888888866          889999999999999988765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.09  E-value=1.3e-08  Score=82.52  Aligned_cols=110  Identities=12%  Similarity=0.078  Sum_probs=56.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHHcCChhhHHHHHHHHHhcCCC
Q 015329          190 NIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTT----------------LISAFYKDNRPEIGNGLWNLMVCKGCF  253 (409)
Q Consensus       190 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~~~~  253 (409)
                      ......+...|++++|+..|++..+.... +...|..                +..++.+.|++++|+..|+...+.. +
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p   85 (208)
T 3urz_A            8 LQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P   85 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence            33444566777777777777777664221 2233333                4445555555555555555555442 2


Q ss_pred             CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 015329          254 PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFC  302 (409)
Q Consensus       254 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  302 (409)
                      -+...+..+..++...|++++|...|++..+.... +...+..+..+|.
T Consensus        86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~  133 (208)
T 3urz_A           86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYY  133 (208)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence            34445555555555555555555555555544321 3444444444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.07  E-value=5.1e-09  Score=100.85  Aligned_cols=174  Identities=8%  Similarity=-0.171  Sum_probs=137.8

Q ss_pred             HhcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329          197 CEMGILDKAYLVMVEMQ--------KLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN  268 (409)
Q Consensus       197 ~~~g~~~~a~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  268 (409)
                      ...|++++|++.|++..        +... .+...+..+..++...|++++|...|++..+.+ +.+...|..+..+|..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            67889999999999988        4322 256778888889999999999999999988863 4567888888889999


Q ss_pred             cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 015329          269 KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIM  348 (409)
Q Consensus       269 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  348 (409)
                      .|++++|...|++..+.... +...+..+..+|.+.|++++ .+.|++..+.... +...|..+..++.+.|++++|.+.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999887533 56778888889999999999 9999998876433 677888899999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329          349 CKDSMKKNWVPSVDTISALLEGLKKNNQ  376 (409)
Q Consensus       349 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~  376 (409)
                      |++..+.+ +-+...+..+..++...|+
T Consensus       557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTS-RHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred             HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence            99877653 2335667777777766554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.05  E-value=3e-08  Score=80.65  Aligned_cols=177  Identities=9%  Similarity=-0.092  Sum_probs=96.3

Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC----CHhHHHHHHH
Q 015329          205 AYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR----RSWQANKLMG  280 (409)
Q Consensus       205 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~  280 (409)
                      |+++|++..+.|   +...+..+...|...+++++|+..|++..+.|   +...+..+-..|.. +    ++++|...|+
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            445555555542   44555555555555666666666666655544   34444455555544 4    5666666666


Q ss_pred             HHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHhHHHHHHHH
Q 015329          281 LMQRFGIEPDEVTYNLVIKGFCR----SGHLDMAKKVYSAMLGRRLM-PNRKIYQTMIHYLCQ----EGDFNLAYIMCKD  351 (409)
Q Consensus       281 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~  351 (409)
                      +..+.|   +...+..|...|..    .+++++|.++|++..+.|.. .+...+..|...|..    .+++++|..+|++
T Consensus        78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            665543   34444555555554    55666666666666655321 014555556666655    5566666666666


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhC-C-----ChHHHHHHHHHHHhcCCC
Q 015329          352 SMKKNWVPSVDTISALLEGLKKN-N-----QPCKANTIMALVQRRVPH  393 (409)
Q Consensus       352 m~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~  393 (409)
                      ..+.  ..+...+..|...|... |     +.++|.+.+++..+.+.+
T Consensus       155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            6554  12333455555555442 2     566666666666665543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.05  E-value=1.4e-08  Score=82.32  Aligned_cols=165  Identities=10%  Similarity=-0.045  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHH----------------HHHHHHhcCCHhHHHHHHHHHHHcC
Q 015329          223 TYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNV----------------RIQHLVNKRRSWQANKLMGLMQRFG  286 (409)
Q Consensus       223 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~  286 (409)
                      .+-.....+...|++++|+..|+...+.. +-+...|..                +..+|.+.|++++|...|++..+..
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   84 (208)
T 3urz_A            6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA   84 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            33444566788999999999999998863 234556666                8889999999999999999999885


Q ss_pred             CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHHhCCCCCCH--H
Q 015329          287 IEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGD--FNLAYIMCKDSMKKNWVPSV--D  362 (409)
Q Consensus       287 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~--~  362 (409)
                      .. +...+..+...|...|++++|...|++..+.... +...+..+...|...|+  ...+...++...    .|+.  .
T Consensus        85 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  158 (208)
T 3urz_A           85 PN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQY  158 (208)
T ss_dssp             TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHH
T ss_pred             CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhH
Confidence            33 7888999999999999999999999999987433 67788888888866554  344555555443    3443  3


Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          363 TISALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      .+.....++...|++++|+..|++..+..|..
T Consensus       159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          159 ARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            44455667778899999999999999998864

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.04  E-value=3.2e-07  Score=78.35  Aligned_cols=219  Identities=7%  Similarity=-0.071  Sum_probs=103.2

Q ss_pred             HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccC--CHHHHHHHHHhcCccCCCCcCHHHHHHHHHHH----Hhc---CCh
Q 015329          132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESR--DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAF----CEM---GIL  202 (409)
Q Consensus       132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---g~~  202 (409)
                      ++|+++++.++..+ +-...+|+.--..+...+  +++++..+++.+.....-  +..+|+.--..+    ...   +++
T Consensus        50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk--~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK--NYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc--cHHHHHHHHHHHHHHHHhccccCCH
Confidence            46666666666553 233344555555555555  555555555444433211  222233322222    222   444


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 015329          203 DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLM  282 (409)
Q Consensus       203 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  282 (409)
                      ++++++++.+.+...+ +..+|+.-.-.+.+.|.++                                 ..+++++++++
T Consensus       127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~---------------------------------~~~EL~~~~~~  172 (306)
T 3dra_A          127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHN---------------------------------DAKELSFVDKV  172 (306)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTT---------------------------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccC---------------------------------hHHHHHHHHHH
Confidence            5555555555544332 4444444444444444444                                 00444444444


Q ss_pred             HHcCCCcCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH-HHHHHHHHHhC
Q 015329          283 QRFGIEPDEVTYNLVIKGFCRSGH------LDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL-AYIMCKDSMKK  355 (409)
Q Consensus       283 ~~~~~~p~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~  355 (409)
                      .+..+. |...|+.-...+.+.|.      ++++++.++.++..... |...|+..-..+.+.|+..+ +..+..+..+.
T Consensus       173 i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~  250 (306)
T 3dra_A          173 IDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDL  250 (306)
T ss_dssp             HHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred             HHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence            444322 34444433333333333      55555555555554433 55555555555555555332 33344443332


Q ss_pred             C--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329          356 N--WVPSVDTISALLEGLKKNNQPCKANTIMALVQR  389 (409)
Q Consensus       356 ~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  389 (409)
                      +  -..+...+..+..+|.+.|+.++|.++++.+.+
T Consensus       251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            1  123455556666666666666666666666554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.03  E-value=1.4e-08  Score=95.94  Aligned_cols=154  Identities=8%  Similarity=-0.015  Sum_probs=114.1

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 015329          199 MGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKL  278 (409)
Q Consensus       199 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  278 (409)
                      .|++++|++.|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            47889999999998876433 67888889999999999999999999998864 45678888899999999999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHhC
Q 015329          279 MGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE---GDFNLAYIMCKDSMKK  355 (409)
Q Consensus       279 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~  355 (409)
                      +++..+.... +...+..+..+|.+.|++++|.+.+++..+.... +...+..+..++...   |++++|.+.+++.++.
T Consensus        80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            9998887533 6778888999999999999999999998876433 677888888999888   9999999999988876


Q ss_pred             C
Q 015329          356 N  356 (409)
Q Consensus       356 ~  356 (409)
                      +
T Consensus       158 ~  158 (568)
T 2vsy_A          158 G  158 (568)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.01  E-value=3e-09  Score=102.44  Aligned_cols=185  Identities=8%  Similarity=-0.113  Sum_probs=144.8

Q ss_pred             hcCCCchhHHHHHHHhh--------hCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc
Q 015329           91 AGARRFDYIEHLLEHQK--------SLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE  162 (409)
Q Consensus        91 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  162 (409)
                      ...|++++|++.+++..        ...+ .+...+..+...|...|++++|++.|++..+.+ +-+...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            78899999999999987        4433 356777788899999999999999999998764 4567889999999999


Q ss_pred             cCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHH
Q 015329          163 SRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNG  242 (409)
Q Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~  242 (409)
                      .|++++|...|++..+..  +-+...|..+..+|.+.|++++ ++.|++..+.+.. +...|..+..++.+.|++++|..
T Consensus       480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999998776542  2256778899999999999999 9999999986544 67889999999999999999999


Q ss_pred             HHHHHHhcCCCCCHhhHHHHHHHHHhcCC--------HhHHHHHHHHH
Q 015329          243 LWNLMVCKGCFPNLATFNVRIQHLVNKRR--------SWQANKLMGLM  282 (409)
Q Consensus       243 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~  282 (409)
                      .|++..+.+ +-+...+..+..++...++        +++|.+.+..+
T Consensus       556 ~~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          556 TLDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            999988753 3345667777777655444        44555544444

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.01  E-value=9.4e-08  Score=78.54  Aligned_cols=189  Identities=10%  Similarity=0.081  Sum_probs=122.4

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCH----hh
Q 015329          185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-P-DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNL----AT  258 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~  258 (409)
                      +...+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|+..|+.+.+..  |+.    ..
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a   80 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV   80 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence            4455666777888999999999999999875332 1 13567778889999999999999999988763  322    13


Q ss_pred             HHHHHHHHHh------------------cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          259 FNVRIQHLVN------------------KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       259 ~~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      +..+..++..                  .|++++|...|+++.+.... +...+.....    .      ..+...+   
T Consensus        81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~----l------~~~~~~~---  146 (225)
T 2yhc_A           81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKR----L------VFLKDRL---  146 (225)
T ss_dssp             HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHH----H------HHHHHHH---
T ss_pred             HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHH----H------HHHHHHH---
Confidence            4444444443                  34455555555555443211 1111111000    0      0000000   


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329          321 RLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS----VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSS  396 (409)
Q Consensus       321 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  396 (409)
                           ......+...|.+.|++++|...|+++++..  |+    ...+..+..++.+.|+.++|.+.++.+....|....
T Consensus       147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence                 0011345667889999999999999988763  33    256888889999999999999999999888776543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.98  E-value=1.4e-08  Score=80.01  Aligned_cols=157  Identities=10%  Similarity=-0.004  Sum_probs=67.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH-HHhcC
Q 015329          192 VIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH-LVNKR  270 (409)
Q Consensus       192 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~  270 (409)
                      ....+.+.|++++|...|++..+.... +...+..+...+...|++++|...++......  |+...+...... +...+
T Consensus        12 ~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~   88 (176)
T 2r5s_A           12 QVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA   88 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence            334444455555555555444432211 33444444444555555555555554443321  122211111100 11111


Q ss_pred             CHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHH
Q 015329          271 RSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP-NRKIYQTMIHYLCQEGDFNLAYIMC  349 (409)
Q Consensus       271 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~  349 (409)
                      +..++...+++..+.... +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...|
T Consensus        89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            222344445554443211 34445555555555555555555555555443221 2334555555555555555555555


Q ss_pred             HHH
Q 015329          350 KDS  352 (409)
Q Consensus       350 ~~m  352 (409)
                      ++.
T Consensus       168 ~~a  170 (176)
T 2r5s_A          168 RRQ  170 (176)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.98  E-value=2e-08  Score=94.91  Aligned_cols=155  Identities=11%  Similarity=-0.053  Sum_probs=120.0

Q ss_pred             cCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHH
Q 015329          163 SRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNG  242 (409)
Q Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~  242 (409)
                      .|++++|...+++..+..  +-+...+..+...|...|++++|.+.|++..+.... +...+..+...+...|++++|..
T Consensus         2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence            467888999887765442  235778999999999999999999999999987543 68889999999999999999999


Q ss_pred             HHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 015329          243 LWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS---GHLDMAKKVYSAMLG  319 (409)
Q Consensus       243 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~  319 (409)
                      .+++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.... +...+..+...+...   |+.++|.+.+++..+
T Consensus        79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            999998874 456788999999999999999999999999887533 678888999999999   999999999999987


Q ss_pred             CCC
Q 015329          320 RRL  322 (409)
Q Consensus       320 ~~~  322 (409)
                      .+.
T Consensus       157 ~~p  159 (568)
T 2vsy_A          157 QGV  159 (568)
T ss_dssp             HTC
T ss_pred             cCC
Confidence            743

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.97  E-value=5.6e-09  Score=79.85  Aligned_cols=138  Identities=9%  Similarity=-0.105  Sum_probs=60.2

Q ss_pred             cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 015329          234 DNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKV  313 (409)
Q Consensus       234 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  313 (409)
                      .|++++|+..+....... +-+...+..+...|.+.|++++|...|++..+.... +...|..+..+|.+.|++++|...
T Consensus        10 ~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~   87 (150)
T 4ga2_A           10 KADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVEC   87 (150)
T ss_dssp             HHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHH
Confidence            344444444444443321 112233334444555555555555555555444321 344455555555555555555555


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 015329          314 YSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIM-CKDSMKKNWVPSVDTISALLEGLKKNN  375 (409)
Q Consensus       314 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~~~l~~~~~~~g  375 (409)
                      |++..+.... +...|..+...|.+.|++++|.+. +++.++.. +-++.+|......+...|
T Consensus        88 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           88 YRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence            5555443221 344455555555555555443332 24433322 223334444334443333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.97  E-value=1.3e-07  Score=80.95  Aligned_cols=165  Identities=10%  Similarity=-0.064  Sum_probs=119.5

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHH-H
Q 015329          114 REGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNI-V  192 (409)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l  192 (409)
                      +...+..+...+.+.|++++|.+.|++..+.. +-+...+..+...+...|++++|...+++....   .|+...... .
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~  191 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVA  191 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHH
Confidence            45556667788888899999999998887764 446677888888888888888888888776554   344433222 2


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-CCHhhHHHHHHHHHhcCC
Q 015329          193 IKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCF-PNLATFNVRIQHLVNKRR  271 (409)
Q Consensus       193 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~  271 (409)
                      ...+.+.++.+.|...|++....... +...+..+...+...|++++|...|..+.+..-. .+...+..+...+...|+
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence            23466677778888888888776443 6777778888888888888888888888775311 125677778888888888


Q ss_pred             HhHHHHHHHHHH
Q 015329          272 SWQANKLMGLMQ  283 (409)
Q Consensus       272 ~~~a~~~~~~~~  283 (409)
                      .++|...|++..
T Consensus       271 ~~~a~~~~r~al  282 (287)
T 3qou_A          271 GDALASXYRRQL  282 (287)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHH
Confidence            888877776654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.97  E-value=1.7e-06  Score=73.83  Aligned_cols=227  Identities=9%  Similarity=0.023  Sum_probs=159.8

Q ss_pred             HHHHhcCCCc-hhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHH---
Q 015329           87 VSRLAGARRF-DYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAG--MIKHAMDTFYDMHLYGCKRTVKSLNAALKVL---  160 (409)
Q Consensus        87 i~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---  160 (409)
                      +.+..+.|.+ ++|+++++.+...++. ...+|+.--..+...|  ++++++++++.+.... +-+..+|+.--..+   
T Consensus        39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~  116 (306)
T 3dra_A           39 LLALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQI  116 (306)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHH
Confidence            3444455555 6899999999887654 5666776666677777  9999999999998875 45667787766655   


Q ss_pred             -Hcc---CCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 015329          161 -TES---RDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILD--KAYLVMVEMQKLGVKPDVITYTTLISAFYKD  234 (409)
Q Consensus       161 -~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~  234 (409)
                       ...   ++++.+..+++.+....  +-+..+|+.-...+.+.|.++  ++++.++++.+.... |...|+.-...+.+.
T Consensus       117 ~~~l~~~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l  193 (306)
T 3dra_A          117 MELNNNDFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSK  193 (306)
T ss_dssp             HHHTTTCCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSS
T ss_pred             HHhccccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence             555   67888888888876653  346777888888888889988  999999999987765 888888776666666


Q ss_pred             CC------hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhH-HHHHHHHHHHcC--CCcCHHHHHHHHHHHHhcC
Q 015329          235 NR------PEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQ-ANKLMGLMQRFG--IEPDEVTYNLVIKGFCRSG  305 (409)
Q Consensus       235 ~~------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g  305 (409)
                      +.      ++++++.++.+.... +-|...|+-.-..+.+.|+... +..+..++.+.+  -..+...+..+...|.+.|
T Consensus       194 ~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~  272 (306)
T 3dra_A          194 KHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK  272 (306)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred             cccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence            65      667777777766654 4566667666666666666333 444555554332  1125566666666666667


Q ss_pred             CHHHHHHHHHHHHh
Q 015329          306 HLDMAKKVYSAMLG  319 (409)
Q Consensus       306 ~~~~a~~~~~~m~~  319 (409)
                      +.++|.++++.+.+
T Consensus       273 ~~~~A~~~~~~l~~  286 (306)
T 3dra_A          273 KYNESRTVYDLLKS  286 (306)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            77777777766654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.97  E-value=3.1e-08  Score=77.98  Aligned_cols=157  Identities=10%  Similarity=-0.015  Sum_probs=69.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHH-HHhc
Q 015329          121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKA-FCEM  199 (409)
Q Consensus       121 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~  199 (409)
                      +...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++.......   +...+..+... +...
T Consensus        12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A           12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChHHHHHHHHHHHHhh
Confidence            4444555555555555555554432 23344555555555555555555555544433321   22221111111 1111


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCCHhHHHHH
Q 015329          200 GILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFP-NLATFNVRIQHLVNKRRSWQANKL  278 (409)
Q Consensus       200 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~  278 (409)
                      ++...|...|++..+.... +...+..+...+...|++++|...|+.+.+....+ +...+..+...+...|+.++|...
T Consensus        88 ~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             cccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            1222344445554443222 34444555555555555555555555554432111 133444455555555555555555


Q ss_pred             HHHH
Q 015329          279 MGLM  282 (409)
Q Consensus       279 ~~~~  282 (409)
                      |++.
T Consensus       167 y~~a  170 (176)
T 2r5s_A          167 YRRQ  170 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.96  E-value=7.2e-08  Score=78.32  Aligned_cols=128  Identities=8%  Similarity=-0.137  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 015329          223 TYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFC  302 (409)
Q Consensus       223 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  302 (409)
                      .+..+...+...|++++|...|++..    .|+...|..+...|...|++++|...+++..+... .+...+..+..+|.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence            34556667777888888888887663    55777788888888888888888888888776642 25677777888888


Q ss_pred             hcCCHHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          303 RSGHLDMAKKVYSAMLGRRLM--------------P-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       303 ~~g~~~~a~~~~~~m~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      ..|++++|.+.|+...+....              | ....+..+..+|...|++++|.+.|++..+.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            888888888888887765322              1 1256677777778888888888888877765

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.95  E-value=1.2e-07  Score=77.85  Aligned_cols=188  Identities=11%  Similarity=-0.039  Sum_probs=129.4

Q ss_pred             CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHH
Q 015329          149 TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV--ITYT  225 (409)
Q Consensus       149 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~  225 (409)
                      +...+..+...+...|+++.|...|+++.......|. ...+..+..+|.+.|++++|+..|+++.+.......  ..+-
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            4456667788899999999999999888766433332 457888899999999999999999999986433111  2444


Q ss_pred             HHHHHHHH------------------cCChhhHHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 015329          226 TLISAFYK------------------DNRPEIGNGLWNLMVCKGCFPNL-ATFNVRIQHLVNKRRSWQANKLMGLMQRFG  286 (409)
Q Consensus       226 ~ll~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  286 (409)
                      .+..++..                  .|++++|...|+.+.+.  .|+. ..+......          ..+...+.   
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~---  147 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA---  147 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH---
Confidence            45555554                  57899999999999886  3433 332221110          00111111   


Q ss_pred             CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 015329          287 IEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP--NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN  356 (409)
Q Consensus       287 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  356 (409)
                           .....+...|.+.|++++|...|+.+.+.....  ....+..+..+|.+.|++++|.+.++.+...+
T Consensus       148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                 112345677888999999999999988762221  12567788889999999999999999877763

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.95  E-value=6.5e-08  Score=82.73  Aligned_cols=164  Identities=9%  Similarity=-0.023  Sum_probs=104.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHH-HH
Q 015329          185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNV-RI  263 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll  263 (409)
                      +...+..+...+.+.|++++|...|++..+.... +...+..+...+.+.|++++|...++.....  .|+...... ..
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~  192 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ  192 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence            4455666666777777777777777777765433 5566667777777777777777777776554  233332222 22


Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCH
Q 015329          264 QHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM-PNRKIYQTMIHYLCQEGDF  342 (409)
Q Consensus       264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~  342 (409)
                      ..+...++.+.|...+++..+... .+...+..+...+...|++++|...|.++.+.... .+...+..+...+...|+.
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            234556666667777777666542 25666667777777777777777777777665322 1245666777777777777


Q ss_pred             hHHHHHHHHH
Q 015329          343 NLAYIMCKDS  352 (409)
Q Consensus       343 ~~a~~~~~~m  352 (409)
                      ++|...+++.
T Consensus       272 ~~a~~~~r~a  281 (287)
T 3qou_A          272 DALASXYRRQ  281 (287)
T ss_dssp             CHHHHHHHHH
T ss_pred             CcHHHHHHHH
Confidence            7777666654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.94  E-value=5.7e-09  Score=79.84  Aligned_cols=119  Identities=5%  Similarity=-0.071  Sum_probs=54.0

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 015329          198 EMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANK  277 (409)
Q Consensus       198 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  277 (409)
                      ..|++++|+..++........ +...+-.+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|..
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~   86 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE   86 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence            344445555544444332111 12233334444555555555555555554432 2344455555555555555555555


Q ss_pred             HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHh
Q 015329          278 LMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKV-YSAMLG  319 (409)
Q Consensus       278 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~  319 (409)
                      .|++..+.... +...+..+...|.+.|+.++|.+. +++..+
T Consensus        87 ~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~  128 (150)
T 4ga2_A           87 CYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK  128 (150)
T ss_dssp             HHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            55555444221 344455555555555555443332 344443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.93  E-value=6.2e-08  Score=83.80  Aligned_cols=218  Identities=9%  Similarity=0.004  Sum_probs=149.9

Q ss_pred             cCCHHHHHHHHHhcCcc-----CCCCcC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CC--CHHHHHHHH
Q 015329          163 SRDLKAIQAFLMEVPEK-----FHIQFD----IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGV---KP--DVITYTTLI  228 (409)
Q Consensus       163 ~~~~~~a~~~~~~~~~~-----~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~---~~--~~~~~~~ll  228 (409)
                      .|++++|..++++..+.     .++.++    ...|+.....|...|++++|.+.|.+..+...   .+  -..+|+.+.
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg   83 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG   83 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46778888888654321     112344    23577778889999999999999998875321   11  144788888


Q ss_pred             HHHHHcCChhhHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---c--CHHHHHHHH
Q 015329          229 SAFYKDNRPEIGNGLWNLMVCK----GCFP-NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE---P--DEVTYNLVI  298 (409)
Q Consensus       229 ~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---p--~~~~~~~li  298 (409)
                      ..|.+.|++++|+..|++..+.    |-.. -..++..+...|.. |++++|+..|++..+....   +  ...++..+.
T Consensus        84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg  162 (307)
T 2ifu_A           84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS  162 (307)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            8899999999999999887653    2111 13567778888888 9999999999988653211   1  145778888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--CCCC--HHHHHHHHH
Q 015329          299 KGFCRSGHLDMAKKVYSAMLGR----RLMPN-RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN--WVPS--VDTISALLE  369 (409)
Q Consensus       299 ~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~--~~~~~~l~~  369 (409)
                      ..|.+.|++++|+..|++..+.    +..+. ...+..+..++...|++++|...|++.+ ..  +...  ......++.
T Consensus       163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~  241 (307)
T 2ifu_A          163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQ  241 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHH
Confidence            8999999999999999988764    21111 2356667777778899999999999887 42  1111  123455556


Q ss_pred             HHHhCCChHHHHHH
Q 015329          370 GLKKNNQPCKANTI  383 (409)
Q Consensus       370 ~~~~~g~~~~a~~~  383 (409)
                      ++ ..|+.+.+.++
T Consensus       242 ~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          242 AY-DEQDEEQLLRV  254 (307)
T ss_dssp             HH-HTTCHHHHHHH
T ss_pred             HH-HhcCHHHHHHH
Confidence            55 57787776664

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.92  E-value=1.1e-07  Score=77.22  Aligned_cols=163  Identities=14%  Similarity=-0.066  Sum_probs=115.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----ChhhHHHHHHHHHhcCCCCCHhhHH
Q 015329          185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDN----RPEIGNGLWNLMVCKGCFPNLATFN  260 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~  260 (409)
                      +...+..+...|...+++++|+++|++..+.|   +...+..|...|.. +    ++++|...|+...+.|   +...+.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~   89 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI   89 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            56667777777777788888888888777754   45666666666666 5    7788888888777665   556666


Q ss_pred             HHHHHHHh----cCCHhHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 015329          261 VRIQHLVN----KRRSWQANKLMGLMQRFGIE-PDEVTYNLVIKGFCR----SGHLDMAKKVYSAMLGRRLMPNRKIYQT  331 (409)
Q Consensus       261 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~  331 (409)
                      .+-..|..    .+++++|...|++..+.|.. -+...+..|...|..    .+++++|...|++..+.  ..+...+..
T Consensus        90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~  167 (212)
T 3rjv_A           90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW  167 (212)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence            67667766    77888888888888776532 125666777777777    77888888888888776  224445666


Q ss_pred             HHHHHHHc-C-----CHhHHHHHHHHHHhCC
Q 015329          332 MIHYLCQE-G-----DFNLAYIMCKDSMKKN  356 (409)
Q Consensus       332 li~~~~~~-g-----~~~~a~~~~~~m~~~~  356 (409)
                      |...|... |     ++++|..+|+...+.|
T Consensus       168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            66666543 3     7888888888877766

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.84  E-value=3.9e-07  Score=78.12  Aligned_cols=162  Identities=9%  Similarity=-0.075  Sum_probs=87.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-CC----HhhHHH
Q 015329          192 VIKAFCEMGILDKAYLVMVEMQKLGV-KPDV----ITYTTLISAFYKDNRPEIGNGLWNLMVCKGCF-PN----LATFNV  261 (409)
Q Consensus       192 ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~  261 (409)
                      .+..+...|++++|...+++..+... .++.    ..+..+...+...+++++|+..++...+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            34555666666666666666655321 1121    12223444555555666666666666552211 11    224666


Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHH----c-CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHH
Q 015329          262 RIQHLVNKRRSWQANKLMGLMQR----F-GIEPD-EVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLMPN-RKIYQ  330 (409)
Q Consensus       262 ll~~~~~~~~~~~a~~~~~~~~~----~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~  330 (409)
                      +...|...|++++|...|+++.+    . +..+. ..++..+...|.+.|++++|...+++..+.    +..+. ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            66666666666666666666652    1 11111 235566666677777777777666665432    22222 45666


Q ss_pred             HHHHHHHHcCC-HhHHHHHHHHHH
Q 015329          331 TMIHYLCQEGD-FNLAYIMCKDSM  353 (409)
Q Consensus       331 ~li~~~~~~g~-~~~a~~~~~~m~  353 (409)
                      .+..+|.+.|+ +++|.+.+++.+
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHH
Confidence            66667777773 466766666554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.82  E-value=1.4e-07  Score=81.49  Aligned_cols=194  Identities=9%  Similarity=-0.022  Sum_probs=139.1

Q ss_pred             HhHHHHHHHHHccCCHHHHHHHHHhcCcc---CCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCC--H
Q 015329          151 KSLNAALKVLTESRDLKAIQAFLMEVPEK---FHIQFD-IFSFNIVIKAFCEMGILDKAYLVMVEMQKLG---VKPD--V  221 (409)
Q Consensus       151 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~~~--~  221 (409)
                      ..|+.....|...|+++.|...+.+...-   .+-... ..+|+.+...|...|++++|+..|++..+.-   -.+.  .
T Consensus        37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a  116 (307)
T 2ifu_A           37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA  116 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            36788888899999999999998765433   221111 4578889999999999999999999876531   1111  4


Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---C--CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCcC-H
Q 015329          222 ITYTTLISAFYKDNRPEIGNGLWNLMVCKGCF---P--NLATFNVRIQHLVNKRRSWQANKLMGLMQRF----GIEPD-E  291 (409)
Q Consensus       222 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~  291 (409)
                      .++..+...|.. |++++|+..|++..+....   +  ...++..+...|.+.|++++|+..|++..+.    +..++ .
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  195 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY  195 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence            567788888888 9999999999988764211   1  1467888899999999999999999998763    22121 2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH---HHHHHHHHHHHHcCCHhHHHH
Q 015329          292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM-PNR---KIYQTMIHYLCQEGDFNLAYI  347 (409)
Q Consensus       292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~---~~~~~li~~~~~~g~~~~a~~  347 (409)
                      ..+..+...+...|++++|...|++.. .... ++.   .....++.++ ..|+.+.+.+
T Consensus       196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            356677778888899999999999988 5211 111   2344455555 5677666555

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.82  E-value=1.2e-06  Score=75.13  Aligned_cols=163  Identities=10%  Similarity=-0.012  Sum_probs=120.7

Q ss_pred             HHHHHHHcCChhhHHHHHHHHHhcC-CCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-cC----HHHHHH
Q 015329          227 LISAFYKDNRPEIGNGLWNLMVCKG-CFPNL----ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE-PD----EVTYNL  296 (409)
Q Consensus       227 ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~  296 (409)
                      .+..+...|++++|..+++...+.. ..|+.    ..+..+...+...|++++|...+++..+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            4567788999999999999987743 22332    23445677777788999999999999874322 22    336888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCCC-HHHHH
Q 015329          297 VIKGFCRSGHLDMAKKVYSAMLGR-----RLMP-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK----NWVPS-VDTIS  365 (409)
Q Consensus       297 li~~~~~~g~~~~a~~~~~~m~~~-----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~  365 (409)
                      +...|...|++++|...|+++.+.     +..+ ...++..+...|.+.|++++|...+++.++.    +..+. ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            999999999999999999988742     1122 2346788889999999999999998887643    22222 67888


Q ss_pred             HHHHHHHhCCC-hHHHHHHHHHHHh
Q 015329          366 ALLEGLKKNNQ-PCKANTIMALVQR  389 (409)
Q Consensus       366 ~l~~~~~~~g~-~~~a~~~~~~~~~  389 (409)
                      .+..++.+.|+ +++|.+.+++...
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            88899999995 6999998888764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.80  E-value=5.6e-07  Score=72.96  Aligned_cols=127  Identities=6%  Similarity=-0.164  Sum_probs=75.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329          189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN  268 (409)
Q Consensus       189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  268 (409)
                      +..+...+...|++++|...|++..    .|+...|..+...+...|++++|...++...+.. +.+...|..+..+|..
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            3444555556666666666665542    3455556666666666666666666666655543 3345556666666666


Q ss_pred             cCCHhHHHHHHHHHHHcCCC--------------c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          269 KRRSWQANKLMGLMQRFGIE--------------P-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       269 ~~~~~~a~~~~~~~~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      .|++++|...|++..+....              | ....+..+..+|.+.|++++|.+.|+...+.
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            66666666666666553211              1 1255666777777777777777777777765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.79  E-value=1.4e-05  Score=73.68  Aligned_cols=310  Identities=10%  Similarity=-0.034  Sum_probs=181.0

Q ss_pred             CChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCC-chhHHHHHHHhhh-CCC-CCChhHHHHHHHHHH----hcCC
Q 015329           58 RDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARR-FDYIEHLLEHQKS-LPQ-GRREGFIMRIMMLYG----KAGM  130 (409)
Q Consensus        58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~-~~~-~~~~~~~~~l~~~~~----~~~~  130 (409)
                      ++.+.+.++|++....-   |+...|...+....+.+. .+.+..+|+.... .|. ..+..+|...+..+.    .+++
T Consensus        28 ~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~  104 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR  104 (493)
T ss_dssp             TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred             CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence            78888999999888754   677788777776666553 3566777776653 232 235677776666543    3456


Q ss_pred             hHHHHHHHHHhhhcCCCCCHHhHHHH------------------------------------------------HHHHHc
Q 015329          131 IKHAMDTFYDMHLYGCKRTVKSLNAA------------------------------------------------LKVLTE  162 (409)
Q Consensus       131 ~~~a~~~~~~m~~~~~~~~~~~~~~l------------------------------------------------l~~~~~  162 (409)
                      ++.+.++|++........-...|...                                                +.--..
T Consensus       105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~  184 (493)
T 2uy1_A          105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME  184 (493)
T ss_dssp             HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence            77888888888763211001112111                                                111000


Q ss_pred             c--CC-----HHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 015329          163 S--RD-----LKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDN  235 (409)
Q Consensus       163 ~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~  235 (409)
                      .  +-     .+.+..+|++.....  +.+...|...+..+.+.|+++.|.++|++....  +.+...|.    .|+...
T Consensus       185 ~~~~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~  256 (493)
T 2uy1_A          185 NGMKLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVM  256 (493)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHT
T ss_pred             CCccCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhc
Confidence            0  00     122334444433321  223555666666667777777777777777766  22222222    222222


Q ss_pred             ChhhHHHHHHHHHhcC---------C---CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 015329          236 RPEIGNGLWNLMVCKG---------C---FPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCR  303 (409)
Q Consensus       236 ~~~~a~~~~~~m~~~~---------~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  303 (409)
                      +.++.   ++.+.+.-         .   ......|...+....+.++.+.|..+|+.. +.. ..+...|......-..
T Consensus       257 e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~  331 (493)
T 2uy1_A          257 DEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY  331 (493)
T ss_dssp             TCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH
T ss_pred             chhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH
Confidence            22221   22222110         0   011244555666666678899999999988 321 2244444332222222


Q ss_pred             -cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 015329          304 -SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANT  382 (409)
Q Consensus       304 -~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  382 (409)
                       .++.+.|..+|+...+.- .-+...+...++.....|+.+.|..+|+.+.     .....|...+..-...|+.+.+.+
T Consensus       332 ~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~  405 (493)
T 2uy1_A          332 ATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRE  405 (493)
T ss_dssp             HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH
Confidence             336999999999988752 1234556667777788899999999999862     256788888887788899999999


Q ss_pred             HHHHHHh
Q 015329          383 IMALVQR  389 (409)
Q Consensus       383 ~~~~~~~  389 (409)
                      ++++..+
T Consensus       406 v~~~~~~  412 (493)
T 2uy1_A          406 LVDQKMD  412 (493)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.78  E-value=8.3e-07  Score=74.17  Aligned_cols=198  Identities=8%  Similarity=-0.106  Sum_probs=135.2

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcCChhhHHHHHHHHHhcCCCCC---------------
Q 015329          198 EMGILDKAYLVMVEMQKLGVKPDVITYTTL-------ISAFYKDNRPEIGNGLWNLMVCKGCFPN---------------  255 (409)
Q Consensus       198 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~m~~~~~~~~---------------  255 (409)
                      ..++...|.+.|.+..+.... ....|..+       ...+.+.++..+++..+..-.+  +.|+               
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence            578888888888888876543 56667666       4555555555555555444433  1221               


Q ss_pred             -------HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H
Q 015329          256 -------LATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN--R  326 (409)
Q Consensus       256 -------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~  326 (409)
                             ....-.....+...|++++|.++|..+...+  |+......+...+.+.+++++|+..|+...... .|.  .
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                   1223345667778899999999998887654  443355556667888899999999997554431 111  2


Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHH
Q 015329          327 KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS--VDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFK  403 (409)
Q Consensus       327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  403 (409)
                      ..+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++....|.  ......|.
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~  248 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALK  248 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHh
Confidence            3567778888899999999999998775433243  346667778888999999999999999988877  55555543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.77  E-value=2.3e-06  Score=73.33  Aligned_cols=166  Identities=9%  Similarity=-0.101  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCChhhHHHHHHHHHhcCC---CCC--Hh
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDV-----ITYTTLISAFYKDNRPEIGNGLWNLMVCKGC---FPN--LA  257 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~  257 (409)
                      .+...+..+...|++++|.+.+.+..+.....+.     ..+..+...+...|++++|+..++...+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            4455666777788888888888777664322111     1223344455566677777777776654321   111  34


Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHHH---c-CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CH
Q 015329          258 TFNVRIQHLVNKRRSWQANKLMGLMQR---F-GIEP--DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLMP-NR  326 (409)
Q Consensus       258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---~-~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~  326 (409)
                      +|+.+...|...|++++|...|++..+   . +..+  ...++..+...|.+.|++++|...+++..+.    +... -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            666667777777777777777776652   1 1111  1246666666777777777777777665432    1111 14


Q ss_pred             HHHHHHHHHHHHcCCHhHH-HHHHHHHH
Q 015329          327 KIYQTMIHYLCQEGDFNLA-YIMCKDSM  353 (409)
Q Consensus       327 ~~~~~li~~~~~~g~~~~a-~~~~~~m~  353 (409)
                      .+|..+..+|.+.|++++| ...+++..
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            5566666667777777777 55555443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.75  E-value=5.8e-07  Score=69.51  Aligned_cols=129  Identities=11%  Similarity=-0.010  Sum_probs=77.3

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYL  336 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  336 (409)
                      ..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+... .+...+..+..++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence            34455555666666666666666666554322 455666666666667777777777766665432 2455666666667


Q ss_pred             HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhCCChHHHHHHHHHHH
Q 015329          337 CQEGDFNLAYIMCKDSMKKNWVPSVDTISAL--LEGLKKNNQPCKANTIMALVQ  388 (409)
Q Consensus       337 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~  388 (409)
                      ...|++++|...+++..+.. +.+...+..+  ...+.+.|++++|.+.+....
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            77777777777777666543 2334444322  233556677777777766554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.75  E-value=5.5e-08  Score=82.87  Aligned_cols=196  Identities=9%  Similarity=-0.021  Sum_probs=123.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329          185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ  264 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  264 (409)
                      +...+..+...+.+.|++++|+..|++..+.... +...|..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            4566777888888888888888888888875433 67788888888888889999988888888763 446677888888


Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 015329          265 HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL  344 (409)
Q Consensus       265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  344 (409)
                      +|...|++++|...|++..+.+.. +...+...+....+.   .++. -+..........+......+.. + ..|+.++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~  153 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTR-L-IAAERER  153 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence            888889999998888887654211 000111111111111   1111 1122222333334444433322 2 2688888


Q ss_pred             HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhC-CChHHHHHHHHHHHhcC
Q 015329          345 AYIMCKDSMKKNWVPSVD-TISALLEGLKKN-NQPCKANTIMALVQRRV  391 (409)
Q Consensus       345 a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~  391 (409)
                      |.+.+++..+.  .|+.. ....+...+.+. +.+++|.++|.++.+..
T Consensus       154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~  200 (281)
T 2c2l_A          154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR  200 (281)
T ss_dssp             HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            88888877665  34443 333343444444 56788888888876543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.75  E-value=7.2e-07  Score=68.94  Aligned_cols=128  Identities=8%  Similarity=-0.035  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 015329          187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHL  266 (409)
Q Consensus       187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  266 (409)
                      ..+..+...+...|++++|...|++..+.... +..++..+...+...|++++|...++...+.. +.+...+..+..++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            44566666677777777777777776664322 45666666666667777777777776666653 33455666666666


Q ss_pred             HhcCCHhHHHHHHHHHHHcCCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Q 015329          267 VNKRRSWQANKLMGLMQRFGIEPDEVTY--NLVIKGFCRSGHLDMAKKVYSAM  317 (409)
Q Consensus       267 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m  317 (409)
                      ...|++++|...+++..+.... +...+  ......+.+.|++++|...+...
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            6666666666666666654322 33333  22223345556666666655543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.74  E-value=1.1e-05  Score=69.80  Aligned_cols=140  Identities=10%  Similarity=-0.066  Sum_probs=73.0

Q ss_pred             HhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccC-CHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhc-C-Ch
Q 015329          126 GKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESR-DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEM-G-IL  202 (409)
Q Consensus       126 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-~~  202 (409)
                      .+.+..++|++++++++..+ +-+..+|+.--..+...+ .++++..+++.+....  +-+..+|+.-...+.+. + ++
T Consensus        65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~  141 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDP  141 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCC
T ss_pred             HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCCh
Confidence            33444567777777777654 334455666655555555 3566666665554331  22344455555555554 4 56


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh--------hHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 015329          203 DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPE--------IGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR  270 (409)
Q Consensus       203 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~  270 (409)
                      ++++++++.+.+...+ +..+|+--.-.+.+.|.++        ++++.++.+.+.. +-|...|+.....+.+.+
T Consensus       142 ~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~  215 (349)
T 3q7a_A          142 VSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP  215 (349)
T ss_dssp             HHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence            6666666666655433 5555554444444444444        4555555554442 334444444444444444

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.73  E-value=4e-07  Score=67.07  Aligned_cols=101  Identities=14%  Similarity=0.088  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329          292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGL  371 (409)
Q Consensus       292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~  371 (409)
                      ..+......|.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..++
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence            34556666777777777777777777665332 56677777777777777777777777776654 45566777777777


Q ss_pred             HhCCChHHHHHHHHHHHhcCCCC
Q 015329          372 KKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       372 ~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      ...|++++|.+.|++..+..|.+
T Consensus        92 ~~~~~~~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHCCCHHHHHHHHHHHHHHCcCC
Confidence            77777777777777777776654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.72  E-value=9.2e-07  Score=70.96  Aligned_cols=155  Identities=10%  Similarity=-0.108  Sum_probs=74.4

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----CC-CCCHhhHHHHHHHHHhcCCH
Q 015329          198 EMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK----GC-FPNLATFNVRIQHLVNKRRS  272 (409)
Q Consensus       198 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~  272 (409)
                      ..|++++|.+.++.+... ......++..+...+...|++++|...+++..+.    +. .....++..+...|...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            345555555533333221 1123444555555555555555555555554431    11 11234455555566666666


Q ss_pred             hHHHHHHHHHHHc----CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCC
Q 015329          273 WQANKLMGLMQRF----GIEP--DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLM-PNRKIYQTMIHYLCQEGD  341 (409)
Q Consensus       273 ~~a~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~  341 (409)
                      ++|...+++..+.    +-.+  ....+..+...+...|++++|...+++..+.    +.. .-..++..+...+...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            6666666555332    1111  1234555555666666666666666655432    100 011224555566666666


Q ss_pred             HhHHHHHHHHHH
Q 015329          342 FNLAYIMCKDSM  353 (409)
Q Consensus       342 ~~~a~~~~~~m~  353 (409)
                      +++|.+.+++..
T Consensus       163 ~~~A~~~~~~al  174 (203)
T 3gw4_A          163 LLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666665543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.71  E-value=1e-06  Score=64.25  Aligned_cols=98  Identities=11%  Similarity=0.025  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH  265 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  265 (409)
                      ...+..+...+...|++++|.++|+++.+... .+..++..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            34555566666666666666666666655432 244555555566666666666666666655542 3344555555555


Q ss_pred             HHhcCCHhHHHHHHHHHHHc
Q 015329          266 LVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       266 ~~~~~~~~~a~~~~~~~~~~  285 (409)
                      +...|++++|...++++.+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHh
Confidence            56666666666666555544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.70  E-value=1.6e-06  Score=74.26  Aligned_cols=168  Identities=9%  Similarity=-0.020  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC-----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---CcC--H
Q 015329          222 ITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN-----LATFNVRIQHLVNKRRSWQANKLMGLMQRFGI---EPD--E  291 (409)
Q Consensus       222 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~  291 (409)
                      ..+...+..+...|++++|.+.+....+.....+     ...+..+...+...|++++|...+++..+...   .+.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            3445566778899999999999998877532211     12344456677788999999999999875422   122  4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCC-C
Q 015329          292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGR-RLMPN-----RKIYQTMIHYLCQEGDFNLAYIMCKDSMKK----NWVP-S  360 (409)
Q Consensus       292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~  360 (409)
                      .+++.+...|...|++++|...+++..+. ...|+     ..++..+...|...|++++|...+++.++.    +... -
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            58899999999999999999999998732 11122     257889999999999999999999987653    1111 2


Q ss_pred             HHHHHHHHHHHHhCCChHHH-HHHHHHHHh
Q 015329          361 VDTISALLEGLKKNNQPCKA-NTIMALVQR  389 (409)
Q Consensus       361 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~  389 (409)
                      ..+|..+..+|.+.|+.++| ...+++...
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            67888999999999999999 777877653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.70  E-value=9.3e-07  Score=65.06  Aligned_cols=98  Identities=11%  Similarity=-0.041  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH  265 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  265 (409)
                      ...+......|.+.|++++|++.|++..+.... +..+|..+..++.+.|++++|+..++...+.+ +.+...|..+..+
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~   90 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence            344666667777777777777777777665433 56666667777777777777777777766653 3455666666667


Q ss_pred             HHhcCCHhHHHHHHHHHHHc
Q 015329          266 LVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       266 ~~~~~~~~~a~~~~~~~~~~  285 (409)
                      +...|++++|...|++..+.
T Consensus        91 ~~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           91 LVAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH
Confidence            77777777777777766665

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.70  E-value=2.8e-07  Score=72.41  Aligned_cols=120  Identities=7%  Similarity=-0.006  Sum_probs=61.2

Q ss_pred             HcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCCH--HH
Q 015329          233 KDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG-FCRSGHL--DM  309 (409)
Q Consensus       233 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~~  309 (409)
                      ..|++++|...++...+.. +.+...|..+...|...|++++|...|++..+.... +...+..+..+ |...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence            3455556666665555542 334455555555666666666666666655544321 34444455555 4455555  55


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          310 AKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       310 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      |...++...+.... +...+..+...|...|++++|...|++.++.
T Consensus       100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            66555555544221 3445555555555555555555555555544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.70  E-value=1e-06  Score=64.26  Aligned_cols=24  Identities=13%  Similarity=0.281  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHH
Q 015329          329 YQTMIHYLCQEGDFNLAYIMCKDS  352 (409)
Q Consensus       329 ~~~li~~~~~~g~~~~a~~~~~~m  352 (409)
                      +..+...+...|++++|...++++
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~~  103 (125)
T 1na0_A           80 WYNLGNAYYKQGDYDEAIEYYQKA  103 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHH
Confidence            333333333333333333333333

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.69  E-value=3.3e-07  Score=69.77  Aligned_cols=97  Identities=11%  Similarity=0.053  Sum_probs=45.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015329          294 YNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKK  373 (409)
Q Consensus       294 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~  373 (409)
                      +..+...+.+.|++++|...|+........ +...|..+..+|...|++++|...|++.++.. +.+...|..+..+|.+
T Consensus        39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR  116 (151)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence            334444444445555555555544443221 34444444444555555555555555444432 2234444444455555


Q ss_pred             CCChHHHHHHHHHHHhcCC
Q 015329          374 NNQPCKANTIMALVQRRVP  392 (409)
Q Consensus       374 ~g~~~~a~~~~~~~~~~~~  392 (409)
                      .|++++|.+.|+++.+..+
T Consensus       117 lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          117 LKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             TTCHHHHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHHHHHhCC
Confidence            5555555555555544443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.69  E-value=3.2e-05  Score=66.87  Aligned_cols=175  Identities=7%  Similarity=-0.057  Sum_probs=119.6

Q ss_pred             hcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHcc-C-CHH
Q 015329           91 AGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAG-MIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTES-R-DLK  167 (409)
Q Consensus        91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~-~~~  167 (409)
                      ...+..++|+++++.+...++. ...+|+.--..+...| .+++++++++.+.... +-+..+|+.-...+... + +++
T Consensus        65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence            3444556899999998877654 5666665555556667 5999999999998765 55677888877777766 6 777


Q ss_pred             HHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---
Q 015329          168 AIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILD--------KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNR---  236 (409)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~---  236 (409)
                      .+..+++.+....  +-+..+|+.-.-.+.+.|.++        ++++.++++.+..+. |...|+.....+.+.+.   
T Consensus       143 ~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~  219 (349)
T 3q7a_A          143 SEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET  219 (349)
T ss_dssp             HHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred             HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence            8888887776553  335666766666666666666        889999999887655 78888887777777665   


Q ss_pred             ----hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 015329          237 ----PEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRR  271 (409)
Q Consensus       237 ----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~  271 (409)
                          ++++++.++...... +-|...|+-+-..+.+.|+
T Consensus       220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence                455666666655543 3455555554444444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.67  E-value=1.3e-07  Score=72.02  Aligned_cols=99  Identities=13%  Similarity=0.091  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329          293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLK  372 (409)
Q Consensus       293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~  372 (409)
                      .+..+...+.+.|++++|...|+........ +...|..+..+|...|++++|...|++.++.. +.+...+..+..+|.
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence            3444444555555555555555555443221 44445555555555555555555555554432 233445555555555


Q ss_pred             hCCChHHHHHHHHHHHhcCCC
Q 015329          373 KNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       373 ~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      ..|++++|.+.+++..+..|.
T Consensus       101 ~~g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A          101 QXGELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHHHHCcC
Confidence            555555555555555554443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.66  E-value=1.3e-06  Score=66.41  Aligned_cols=104  Identities=7%  Similarity=-0.083  Sum_probs=76.0

Q ss_pred             CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329          255 NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH  334 (409)
Q Consensus       255 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  334 (409)
                      +...+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|...|++..+.... +...|..+..
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~  112 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence            3456666777777888888888888888776432 6777777888888888888888888887776433 5567777788


Q ss_pred             HHHHcCCHhHHHHHHHHHHhCCCCCCHH
Q 015329          335 YLCQEGDFNLAYIMCKDSMKKNWVPSVD  362 (409)
Q Consensus       335 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~  362 (409)
                      +|...|++++|...|++.++.  .|+..
T Consensus       113 ~~~~lg~~~eA~~~~~~al~l--~~~~~  138 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQH--SNDEK  138 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence            888888888888888877765  35543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.66  E-value=1.3e-06  Score=64.33  Aligned_cols=117  Identities=12%  Similarity=0.010  Sum_probs=54.3

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYL  336 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  336 (409)
                      ..+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.++...+... .+...+..+...+
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~   90 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHH
Confidence            3344444444455555555555555444321 1344444445555555555555555555444321 1344444555555


Q ss_pred             HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329          337 CQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ  376 (409)
Q Consensus       337 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~  376 (409)
                      ...|++++|...|++..+.. +.+...+..+..++.+.|+
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence            55555555555555544432 2234444444444444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.65  E-value=1.5e-06  Score=63.97  Aligned_cols=118  Identities=7%  Similarity=-0.059  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH  265 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  265 (409)
                      ...+..+...+...|++++|...|++....... +...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence            445566666666667777777776666654322 45556666666666666666666666665542 3344555555566


Q ss_pred             HHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 015329          266 LVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGH  306 (409)
Q Consensus       266 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  306 (409)
                      +...|++++|...+++..+.... +...+..+..++.+.|+
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence            66666666666666665554321 34445555555554443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.65  E-value=9.7e-07  Score=73.77  Aligned_cols=189  Identities=10%  Similarity=-0.079  Sum_probs=126.0

Q ss_pred             hcCChHHHHHHHHHhhcCCCCCCccchHHHH-------HHHHhcCCCchhHHHHHHHhhhCCC-----------------
Q 015329           56 AERDPEKLFQLFKANAHNRIVIENKYAFEDT-------VSRLAGARRFDYIEHLLEHQKSLPQ-----------------  111 (409)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~-----------------  111 (409)
                      ..++++.|.+.|..+.+.+  +-....|..+       ...+.+.++..++...+.......+                 
T Consensus        18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence            4689999999999998887  3444567666       4555555555666555555443111                 


Q ss_pred             ---CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcC--H
Q 015329          112 ---GRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFD--I  186 (409)
Q Consensus       112 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~  186 (409)
                         .....+...+...+...|++++|.++|+.+...+  |+......+...+.+.+++++++..|+..... . .|.  .
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~  171 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAG  171 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHH
Confidence               0013344456777888899999999998887643  43335555666788888888888888543221 1 111  2


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Q 015329          187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD--VITYTTLISAFYKDNRPEIGNGLWNLMVCK  250 (409)
Q Consensus       187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  250 (409)
                      ..+..+..++.+.|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3566777888888888888888888875332243  334555667777888888888888888775

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.65  E-value=4.2e-07  Score=72.99  Aligned_cols=159  Identities=9%  Similarity=-0.055  Sum_probs=117.4

Q ss_pred             HHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCC
Q 015329          232 YKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF----GIEP-DEVTYNLVIKGFCRSGH  306 (409)
Q Consensus       232 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~  306 (409)
                      ...|++++|.++++.+... .......+..+...+...|++++|...+++..+.    +..+ ....+..+...|...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            4679999999966655442 2246678888999999999999999999988652    2222 35677888889999999


Q ss_pred             HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhCC
Q 015329          307 LDMAKKVYSAMLGR----RLMP--NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK----NWV-PSVDTISALLEGLKKNN  375 (409)
Q Consensus       307 ~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~l~~~~~~~g  375 (409)
                      +++|.+.+++..+.    +-.+  ....+..+...+...|++++|...+++..+.    +.. ....++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            99999999987654    2111  2345778888999999999999999987643    211 11234677889999999


Q ss_pred             ChHHHHHHHHHHHhcC
Q 015329          376 QPCKANTIMALVQRRV  391 (409)
Q Consensus       376 ~~~~a~~~~~~~~~~~  391 (409)
                      ++++|.+.+++..+..
T Consensus       162 ~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          162 NLLEAQQHWLRARDIF  177 (203)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999876544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.64  E-value=1.3e-06  Score=64.50  Aligned_cols=117  Identities=9%  Similarity=-0.070  Sum_probs=72.1

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329          185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ  264 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  264 (409)
                      +...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            4556667777777777777777777777765332 55666666666667777777777777666643 334556666666


Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 015329          265 HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRS  304 (409)
Q Consensus       265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  304 (409)
                      ++...|++++|...|++..+.... +...+..+...+...
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHh
Confidence            666667777777666666554321 233444444444433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.63  E-value=9.9e-07  Score=65.22  Aligned_cols=92  Identities=14%  Similarity=-0.005  Sum_probs=34.1

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329          259 FNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ  338 (409)
Q Consensus       259 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  338 (409)
                      +..+...+...|++++|...+++..+.... +...+..+...|...|++++|.+.+++..+.... +...+..+..++..
T Consensus        19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~   96 (133)
T 2lni_A           19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALEA   96 (133)
T ss_dssp             HHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence            333333333344444444444433332111 2333333333333444444444444433332111 23333333334444


Q ss_pred             cCCHhHHHHHHHHH
Q 015329          339 EGDFNLAYIMCKDS  352 (409)
Q Consensus       339 ~g~~~~a~~~~~~m  352 (409)
                      .|++++|.+.|++.
T Consensus        97 ~~~~~~A~~~~~~~  110 (133)
T 2lni_A           97 MKDYTKAMDVYQKA  110 (133)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHH
Confidence            44444444444433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.59  E-value=1.5e-06  Score=75.99  Aligned_cols=132  Identities=7%  Similarity=-0.042  Sum_probs=84.8

Q ss_pred             CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC--------------HhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329          220 DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN--------------LATFNVRIQHLVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  285 (409)
                      +...+..+...+.+.|++++|...|++..+..-...              ...|..+..+|.+.|++++|+..+++..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456777778888888888888888888877531111              356666666667777777777777766665


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHH-HHHHHHHH
Q 015329          286 GIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLA-YIMCKDSM  353 (409)
Q Consensus       286 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~  353 (409)
                      ... +...|..+..+|...|++++|...|++..+.... +...+..+..++...|+.++| ..+++.|.
T Consensus       226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            422 5566666666666677777777777666655322 455566666666666666666 33444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.58  E-value=7.4e-07  Score=69.96  Aligned_cols=121  Identities=5%  Similarity=-0.019  Sum_probs=88.8

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH-HHhcCCH--h
Q 015329          197 CEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH-LVNKRRS--W  273 (409)
Q Consensus       197 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~--~  273 (409)
                      ...|++++|...+++..+.... +...|..+...+...|++++|...|+...+.. +.+...+..+..+ +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            4567788888888887765432 66778888888888888888888888887753 3456667777777 6778887  8


Q ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          274 QANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       274 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      +|...+++..+.... +...+..+...|...|++++|...|+...+.
T Consensus        99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            888888888776432 5677777888888888888888888888776

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.58  E-value=2.2e-06  Score=75.01  Aligned_cols=132  Identities=11%  Similarity=-0.061  Sum_probs=105.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Q 015329          185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD--------------VITYTTLISAFYKDNRPEIGNGLWNLMVCK  250 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  250 (409)
                      +...+..+...|.+.|++++|+..|++..+......              ...|..+..++.+.|++++|+..++...+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            355677788888888888888888888887543321              478888888999999999999999998886


Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 015329          251 GCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMA-KKVYSAML  318 (409)
Q Consensus       251 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~  318 (409)
                      . +.+...|..+..+|...|++++|...|++..+.... +...+..+..++.+.|+.++| ..+|..|.
T Consensus       226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 457788888899999999999999999998887533 677788888888888888888 44666654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.57  E-value=9.6e-07  Score=63.00  Aligned_cols=102  Identities=12%  Similarity=0.011  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 015329          292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVP--SVDTISALLE  369 (409)
Q Consensus       292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~  369 (409)
                      ..+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+.. +.  +...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence            34455666666777777777777776655322 55667777777777777888877777777653 33  5677777777


Q ss_pred             HHHhC-CChHHHHHHHHHHHhcCCCCC
Q 015329          370 GLKKN-NQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       370 ~~~~~-g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      ++.+. |++++|.+.++.+.+..|+.+
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            78888 888888888888777776553

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.57  E-value=1.3e-06  Score=64.13  Aligned_cols=97  Identities=15%  Similarity=0.115  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329          293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLK  372 (409)
Q Consensus       293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~  372 (409)
                      .+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|...+++.++.. +.+...+..+..++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            3344444455555555555555555443221 34455555555555555555555555555443 334445555555555


Q ss_pred             hCCChHHHHHHHHHHHhcC
Q 015329          373 KNNQPCKANTIMALVQRRV  391 (409)
Q Consensus       373 ~~g~~~~a~~~~~~~~~~~  391 (409)
                      ..|++++|.+.+++..+..
T Consensus        84 ~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           84 AVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHhC
Confidence            5555555555555555544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.56  E-value=2e-06  Score=66.50  Aligned_cols=99  Identities=8%  Similarity=-0.006  Sum_probs=74.5

Q ss_pred             CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329          255 NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH  334 (409)
Q Consensus       255 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  334 (409)
                      +...+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|+..|++..+.... +...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            4566777777888888888888888888776432 6677777788888888888888888887766433 5677777888


Q ss_pred             HHHHcCCHhHHHHHHHHHHhC
Q 015329          335 YLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       335 ~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      +|...|++++|...|++.++.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            888888888888888877664

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.53  E-value=1.2e-06  Score=66.57  Aligned_cols=87  Identities=9%  Similarity=-0.094  Sum_probs=32.4

Q ss_pred             HHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 015329          229 SAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLD  308 (409)
Q Consensus       229 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  308 (409)
                      ..+...|++++|...|+...... +.+...|..+..+|...|++++|...|++..+.... +...+..+..+|...|+++
T Consensus        29 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~  106 (148)
T 2vgx_A           29 FNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQXGELA  106 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHH
Confidence            33333344444444443333321 223333333333334444444444444443333211 2233333333444444444


Q ss_pred             HHHHHHHHH
Q 015329          309 MAKKVYSAM  317 (409)
Q Consensus       309 ~a~~~~~~m  317 (409)
                      +|...|+..
T Consensus       107 ~A~~~~~~a  115 (148)
T 2vgx_A          107 EAESGLFLA  115 (148)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.52  E-value=1.4e-06  Score=65.67  Aligned_cols=95  Identities=9%  Similarity=-0.046  Sum_probs=44.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 015329          296 LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN  375 (409)
Q Consensus       296 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g  375 (409)
                      .+...+.+.|++++|...|+........ +...|..+..+|...|++++|...|++.++.+ +.+...+..+..+|...|
T Consensus        23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g  100 (142)
T 2xcb_A           23 ALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLG  100 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence            3344444455555555555544443221 34444444445555555555555555544432 233344444445555555


Q ss_pred             ChHHHHHHHHHHHhcCC
Q 015329          376 QPCKANTIMALVQRRVP  392 (409)
Q Consensus       376 ~~~~a~~~~~~~~~~~~  392 (409)
                      ++++|.+.++.+.+..|
T Consensus       101 ~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A          101 DLDGAESGFYSARALAA  117 (142)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCC
Confidence            55555555555544443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.51  E-value=9.5e-07  Score=75.17  Aligned_cols=63  Identities=8%  Similarity=-0.096  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVC  249 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  249 (409)
                      ...|..+...|.+.|++++|+..+++..+.... +...+..+..++...|++++|...|+...+
T Consensus        38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444444555555555555555554443222 344444455555555555555555554443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.51  E-value=1.1e-05  Score=57.97  Aligned_cols=93  Identities=16%  Similarity=0.070  Sum_probs=37.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329          297 VIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ  376 (409)
Q Consensus       297 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~  376 (409)
                      +...+...|++++|...++....... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus        10 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~   87 (118)
T 1elw_A           10 KGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR   87 (118)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhh
Confidence            33333444444444444444333211 133333444444444444444444444433322 2233344444444444444


Q ss_pred             hHHHHHHHHHHHhcC
Q 015329          377 PCKANTIMALVQRRV  391 (409)
Q Consensus       377 ~~~a~~~~~~~~~~~  391 (409)
                      +++|.+.+++..+..
T Consensus        88 ~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           88 FEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcC
Confidence            444444444444433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.50  E-value=1.7e-06  Score=64.51  Aligned_cols=99  Identities=10%  Similarity=-0.024  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329          291 EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEG  370 (409)
Q Consensus       291 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~  370 (409)
                      ...+..+...+...|++++|...|+........ +...|..+..++...|++++|...+++.++.. +.+...+..+..+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   86 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   86 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence            344444444444444555554444444443211 33444444444445555555555554444432 2234444444455


Q ss_pred             HHhCCChHHHHHHHHHHHhcC
Q 015329          371 LKKNNQPCKANTIMALVQRRV  391 (409)
Q Consensus       371 ~~~~g~~~~a~~~~~~~~~~~  391 (409)
                      +...|++++|.+.++++.+..
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHC
Confidence            555555555555555444433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.50  E-value=4.2e-06  Score=60.13  Aligned_cols=112  Identities=11%  Similarity=0.030  Sum_probs=92.5

Q ss_pred             CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329          255 NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH  334 (409)
Q Consensus       255 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  334 (409)
                      +...+..+...+...|++++|...+++...... .+...+..+...+...|++++|...+++..+.... +...+..+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence            456778888999999999999999999988753 26788888999999999999999999999876432 6788899999


Q ss_pred             HHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329          335 YLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLE  369 (409)
Q Consensus       335 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~  369 (409)
                      ++...|++++|.+.+++..+.+ +.+...+..+..
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~  114 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN  114 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence            9999999999999999988764 344555544433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.48  E-value=0.00011  Score=63.06  Aligned_cols=185  Identities=6%  Similarity=-0.068  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC-HhHHHHHH
Q 015329          203 DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDN--RPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRR-SWQANKLM  279 (409)
Q Consensus       203 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~  279 (409)
                      ++++.+++.+.....+ +..+|+.-...+.+.+  .+++++.+++.+.+.. +-|...|+.-.-.+...|. ++++++.+
T Consensus        91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            3444444444443322 4444444333333434  2444455555444432 3344444444444444444 34455555


Q ss_pred             HHHHHcCCCcCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc------
Q 015329          280 GLMQRFGIEPDEVTYNLVIKGFCRS--------------GHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE------  339 (409)
Q Consensus       280 ~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~------  339 (409)
                      ..+.+..+. |...|+.....+.+.              +.++++++.+......... |...|+-+-..+.+.      
T Consensus       169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~  246 (331)
T 3dss_A          169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL  246 (331)
T ss_dssp             HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred             HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence            555444322 344443333333322              2345566666655554322 445554333333332      


Q ss_pred             -----CCHhHHHHHHHHHHhCCCCCCH-HHHHHHH---HHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          340 -----GDFNLAYIMCKDSMKKNWVPSV-DTISALL---EGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       340 -----g~~~~a~~~~~~m~~~~~~~~~-~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                           +.++++++.++++.+.  .|+. -++..++   .+....|..+++...+.++++.+|-
T Consensus       247 ~~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~  307 (331)
T 3dss_A          247 SVEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  307 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred             chHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence                 3456777777777664  3433 1221111   1222456677778888888777643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.47  E-value=7.8e-06  Score=59.92  Aligned_cols=97  Identities=12%  Similarity=-0.037  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 015329          187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHL  266 (409)
Q Consensus       187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  266 (409)
                      ..+..+...+.+.|++++|+..|++..+.... +...|..+..++.+.|++++|+..++...+.. +.+...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            44555566666666666666666666654322 45566666666666666666666666666543 33455556666666


Q ss_pred             HhcCCHhHHHHHHHHHHHc
Q 015329          267 VNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       267 ~~~~~~~~a~~~~~~~~~~  285 (409)
                      ...|++++|...|++..+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           83 IAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHh
Confidence            6666666666666665543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.46  E-value=5.7e-07  Score=72.11  Aligned_cols=88  Identities=13%  Similarity=-0.073  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329          292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGL  371 (409)
Q Consensus       292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~  371 (409)
                      ..+..+..+|.+.|++++|...++...+... .+...+..+..+|...|++++|...|++.++.. +-+...+..+..++
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence            4555566666666666666666666665422 245566666666666666666666666665543 33455555555555


Q ss_pred             HhCCChHHHH
Q 015329          372 KKNNQPCKAN  381 (409)
Q Consensus       372 ~~~g~~~~a~  381 (409)
                      ...++.+++.
T Consensus       167 ~~~~~~~~~~  176 (198)
T 2fbn_A          167 NKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHHH
Confidence            5555555554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.44  E-value=0.00013  Score=67.16  Aligned_cols=100  Identities=7%  Similarity=-0.032  Sum_probs=70.1

Q ss_pred             CCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHHhhhc-CC-CCCHHh
Q 015329           76 VIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGM-IKHAMDTFYDMHLY-GC-KRTVKS  152 (409)
Q Consensus        76 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~-~~-~~~~~~  152 (409)
                      +..-..+|...+..+-. |+++.+..+|+.....-  |+...|...+....+.+. .+....+|+..... |. ..+...
T Consensus        11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i   87 (493)
T 2uy1_A           11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL   87 (493)
T ss_dssp             -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred             hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence            33444667777777755 88999999999998753  488898888877777663 45677788877653 43 346678


Q ss_pred             HHHHHHHHHc----cCCHHHHHHHHHhcCc
Q 015329          153 LNAALKVLTE----SRDLKAIQAFLMEVPE  178 (409)
Q Consensus       153 ~~~ll~~~~~----~~~~~~a~~~~~~~~~  178 (409)
                      |...+..+..    .++.+.+..+|+....
T Consensus        88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~  117 (493)
T 2uy1_A           88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQ  117 (493)
T ss_dssp             HHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence            8888876543    3567889999977754

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.43  E-value=2.6e-06  Score=62.14  Aligned_cols=95  Identities=11%  Similarity=0.043  Sum_probs=48.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329          297 VIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ  376 (409)
Q Consensus       297 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~  376 (409)
                      +...+.+.|++++|...|+...+.... +...|..+..++...|++++|+..|++.++.. +-+...+..+..++...|+
T Consensus        23 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           23 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN  100 (121)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            334455555555555555555544221 44555555555555555555555555555543 3344455555555555566


Q ss_pred             hHHHHHHHHHHHhcCCC
Q 015329          377 PCKANTIMALVQRRVPH  393 (409)
Q Consensus       377 ~~~a~~~~~~~~~~~~~  393 (409)
                      +++|.+.++++.+..|.
T Consensus       101 ~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A          101 ANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHhCcC
Confidence            66666666555555443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.43  E-value=7.9e-06  Score=60.09  Aligned_cols=57  Identities=5%  Similarity=-0.073  Sum_probs=23.8

Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329          261 VRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAML  318 (409)
Q Consensus       261 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  318 (409)
                      .+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|++.+++.+
T Consensus        13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A           13 DLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            3334444444444444444444433211 33344444444444444444444444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.42  E-value=0.00011  Score=63.22  Aligned_cols=203  Identities=8%  Similarity=-0.073  Sum_probs=149.8

Q ss_pred             HHHHHHHHH---HHhcCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hhhHHHHHHHHHhcCC
Q 015329          187 FSFNIVIKA---FCEMGILD-KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNR----------PEIGNGLWNLMVCKGC  252 (409)
Q Consensus       187 ~~~~~ll~~---~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~  252 (409)
                      ..|..++..   ..+.|.++ +|+++++.+...+.. +..+|+.--..+...+.          +++++.+++.+.... 
T Consensus        27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-  104 (331)
T 3dss_A           27 KLYQSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-  104 (331)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-
Confidence            344444432   34566665 789999998886543 45556544333333332          678889999988864 


Q ss_pred             CCCHhhHHHHHHHHHhcC--CHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHH
Q 015329          253 FPNLATFNVRIQHLVNKR--RSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGH-LDMAKKVYSAMLGRRLMPNRKIY  329 (409)
Q Consensus       253 ~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~  329 (409)
                      +-+..+|+.-.-.+...+  ++++++.+++.+.+.... |...|+.-.-.+...|. ++++++.++.+++..+. |...|
T Consensus       105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW  182 (331)
T 3dss_A          105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSW  182 (331)
T ss_dssp             TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHH
T ss_pred             CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHH
Confidence            567888888777777888  489999999999988654 88888877777788888 59999999999988665 88888


Q ss_pred             HHHHHHHHHc--------------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-----------CChHHHHHHH
Q 015329          330 QTMIHYLCQE--------------GDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKN-----------NQPCKANTIM  384 (409)
Q Consensus       330 ~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~  384 (409)
                      +.....+...              +.++++++.+++.+... +-|...|+.+-..+.+.           +.++++++.+
T Consensus       183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~  261 (331)
T 3dss_A          183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC  261 (331)
T ss_dssp             HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence            8777666655              45788999999988765 56677776655555554           4578999999


Q ss_pred             HHHHhcCCCC
Q 015329          385 ALVQRRVPHF  394 (409)
Q Consensus       385 ~~~~~~~~~~  394 (409)
                      +++.+..|++
T Consensus       262 ~elle~~pd~  271 (331)
T 3dss_A          262 KELQELEPEN  271 (331)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHhhCccc
Confidence            9999999876

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.42  E-value=8.5e-06  Score=59.92  Aligned_cols=98  Identities=8%  Similarity=-0.017  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CCC----HhhHH
Q 015329          187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGC--FPN----LATFN  260 (409)
Q Consensus       187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~  260 (409)
                      ..+..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..++...+...  .++    ..+|.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            34566667777777777777777777665432 456666666777777777777777766654310  011    12444


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329          261 VRIQHLVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       261 ~ll~~~~~~~~~~~a~~~~~~~~~~  285 (409)
                      .+..++...|++++|++.|++..+.
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4555555666666666666655543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.40  E-value=3e-05  Score=70.21  Aligned_cols=119  Identities=3%  Similarity=-0.225  Sum_probs=52.4

Q ss_pred             cCCHhHHHHHHHHHHH----cCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC--CC-CHHHHHHHHHHHHH
Q 015329          269 KRRSWQANKLMGLMQR----FGIEPD-EVTYNLVIKGFCRSGHLDMAKKVYSAMLGR--RL--MP-NRKIYQTMIHYLCQ  338 (409)
Q Consensus       269 ~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~--~p-~~~~~~~li~~~~~  338 (409)
                      .|+.+.+..++.....    .+..+. ..++..+...|...|++++|..++++....  +.  .+ ...++..++..|..
T Consensus       108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (434)
T 4b4t_Q          108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK  187 (434)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            4455555555544422    111111 234445555555555555555555544322  11  11 12344555555555


Q ss_pred             cCCHhHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHH
Q 015329          339 EGDFNLAYIMCKDSMKK--NWVPS----VDTISALLEGLKKNNQPCKANTIMALV  387 (409)
Q Consensus       339 ~g~~~~a~~~~~~m~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~  387 (409)
                      .|++++|..++++....  .+..+    ...+..+...+...|++++|...+.+.
T Consensus       188 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          188 LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            55555555555544321  11111    123334444445555555555554444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.39  E-value=1.1e-05  Score=64.39  Aligned_cols=98  Identities=8%  Similarity=-0.047  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC--------------HHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-PD--------------VITYTTLISAFYKDNRPEIGNGLWNLMVCK  250 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  250 (409)
                      ...+..+...+...|++++|+..|++..+.... ++              ...|..+..++.+.|++++|+..++...+.
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            345666677777888888888888877764221 10              133334444444444444444444444433


Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329          251 GCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQR  284 (409)
Q Consensus       251 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  284 (409)
                      . +.+...+..+..+|...|++++|...|++..+
T Consensus       118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A          118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            1 22333344444444444444444444444433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.38  E-value=6.9e-06  Score=60.26  Aligned_cols=98  Identities=7%  Similarity=-0.022  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CCC----HhhHH
Q 015329          187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGC--FPN----LATFN  260 (409)
Q Consensus       187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~  260 (409)
                      ..+..+...+...|++++|...|++..+... .+...+..+...+...|++++|...++.......  .++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            3455566666666666666666666665432 2455556666666666666666666666554321  111    44455


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329          261 VRIQHLVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       261 ~ll~~~~~~~~~~~a~~~~~~~~~~  285 (409)
                      .+..++...|++++|...|+...+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh
Confidence            5555555666666666666555554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=2.3e-05  Score=58.97  Aligned_cols=95  Identities=11%  Similarity=-0.044  Sum_probs=39.6

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPD----EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTM  332 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  332 (409)
                      ..+..+...+...|++++|...|++..+.  .|+    ...+..+...|...|++++|...++...+.... +...+..+
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~  105 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR  105 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence            33344444444444444444444444433  122    233344444444444444444444444333111 23334444


Q ss_pred             HHHHHHcCCHhHHHHHHHHHHh
Q 015329          333 IHYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       333 i~~~~~~g~~~~a~~~~~~m~~  354 (409)
                      ..++...|++++|...|++.++
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            4444444444444444444433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.36  E-value=1.4e-05  Score=60.19  Aligned_cols=103  Identities=13%  Similarity=0.056  Sum_probs=90.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHH
Q 015329          290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN----RKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTIS  365 (409)
Q Consensus       290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  365 (409)
                      +...+..+...+...|++++|...|++..+.  .|+    ...+..+..+|...|++++|...+++..+.. +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            5778888899999999999999999999876  455    6778889999999999999999999988764 45678889


Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          366 ALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       366 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      .+..++...|++++|.+.+++..+..|...
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  133 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNK  133 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence            999999999999999999999998876553

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.36  E-value=1e-05  Score=60.79  Aligned_cols=97  Identities=8%  Similarity=-0.153  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 015329          187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHL  266 (409)
Q Consensus       187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  266 (409)
                      ..+..+...+.+.|++++|...|++....... +...|..+..++...|++++|...|+...... +.+...+..+..+|
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence            34555556666777777777777776665432 55666666666666777777777776666653 33455566666666


Q ss_pred             HhcCCHhHHHHHHHHHHHc
Q 015329          267 VNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       267 ~~~~~~~~a~~~~~~~~~~  285 (409)
                      ...|++++|...|+...+.
T Consensus        97 ~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6667777666666666544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.34  E-value=6.2e-06  Score=58.63  Aligned_cols=96  Identities=10%  Similarity=0.012  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCC--CHhhHHHHHHH
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFP--NLATFNVRIQH  265 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~  265 (409)
                      .+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.  +...+..+..+
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA   85 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence            3444555555555666666655555543322 34445555555555555555555555555432 22  34445555555


Q ss_pred             HHhc-CCHhHHHHHHHHHHHc
Q 015329          266 LVNK-RRSWQANKLMGLMQRF  285 (409)
Q Consensus       266 ~~~~-~~~~~a~~~~~~~~~~  285 (409)
                      +... |++++|.+.++...+.
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHhCCHHHHHHHHHHHhhc
Confidence            5555 5555555555555444

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.34  E-value=1.7e-05  Score=58.87  Aligned_cols=98  Identities=8%  Similarity=-0.140  Sum_probs=51.8

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329          185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ  264 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  264 (409)
                      +...+..+...+...|++++|...|++....... +...|..+..++...|++++|...++...+.. +.+...+..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence            3445555555556666666666666655554322 34455555555555555555555555555442 223445555555


Q ss_pred             HHHhcCCHhHHHHHHHHHHH
Q 015329          265 HLVNKRRSWQANKLMGLMQR  284 (409)
Q Consensus       265 ~~~~~~~~~~a~~~~~~~~~  284 (409)
                      +|...|++++|...|++..+
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            55555555555555555443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.34  E-value=2.2e-05  Score=60.54  Aligned_cols=99  Identities=8%  Similarity=-0.118  Sum_probs=55.4

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329          185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ  264 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  264 (409)
                      +...+..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|+...+.. +.+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            3445556666666666666666666666654322 45555555555666666666666665555543 233455555555


Q ss_pred             HHHhcCCHhHHHHHHHHHHHc
Q 015329          265 HLVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       265 ~~~~~~~~~~a~~~~~~~~~~  285 (409)
                      +|...|++++|...|++..+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            555555555555555555443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.34  E-value=1.2e-05  Score=58.96  Aligned_cols=108  Identities=9%  Similarity=0.032  Sum_probs=64.2

Q ss_pred             hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHH
Q 015329          257 ATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRL--MPN----RKIYQ  330 (409)
Q Consensus       257 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~  330 (409)
                      ..+..+...+...|++++|...|++..+... .+...+..+...|...|++++|...++...+...  .++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            4455666666667777777777776665532 2455666666666667777777776666655421  111    45556


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 015329          331 TMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISAL  367 (409)
Q Consensus       331 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l  367 (409)
                      .+..++...|++++|.+.|++..+.  .|+......+
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l  118 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC  118 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence            6666666666666666666666554  2444444443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.33  E-value=2e-05  Score=71.44  Aligned_cols=198  Identities=7%  Similarity=-0.043  Sum_probs=132.9

Q ss_pred             HhhhhcCChHHHHHHHHHhhcCCCCCCcc---------------chHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCCh-
Q 015329           52 VKLKAERDPEKLFQLFKANAHNRIVIENK---------------YAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRRE-  115 (409)
Q Consensus        52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-  115 (409)
                      ..+...|++++|++.|..+.+...-..+.               .++..+...|...|++++|.+.+..+......... 
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            45678899999999999998765322222               13667888899999999999998887643222221 


Q ss_pred             ----hHHHHHHHHHHhcCChHHHHHHHHHhhhc----CCCC-CHHhHHHHHHHHHccCCHHHHHHHHHhcCccCC----C
Q 015329          116 ----GFIMRIMMLYGKAGMIKHAMDTFYDMHLY----GCKR-TVKSLNAALKVLTESRDLKAIQAFLMEVPEKFH----I  182 (409)
Q Consensus       116 ----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~  182 (409)
                          .+.+.+-..+...|+++.|.+++......    +..+ ...++..+...+...|+++.|..++++......    -
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence                12223334455678889999888876532    2222 245677888889999999888888765433211    1


Q ss_pred             CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCC-C-C--HHHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329          183 QFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL--GVK-P-D--VITYTTLISAFYKDNRPEIGNGLWNLMVC  249 (409)
Q Consensus       183 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~-~-~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  249 (409)
                      .-...++..++..|...|++++|...+++....  .+. | .  ...+..+...+...|++++|...|.+..+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            112556888888999999999999988877642  111 1 1  23455666667778888888877766643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.25  E-value=2.4e-05  Score=57.41  Aligned_cols=90  Identities=8%  Similarity=-0.001  Sum_probs=39.8

Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 015329          263 IQHLVNKRRSWQANKLMGLMQRFGIEPDE---VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN---RKIYQTMIHYL  336 (409)
Q Consensus       263 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~  336 (409)
                      ...+...|++++|...|+.+.+.... +.   ..+..+..++...|++++|...|+...+.... +   ...+..+..++
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~   86 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence            34444455555555555555443211 11   23344444444555555555555544443211 1   33344444444


Q ss_pred             HHcCCHhHHHHHHHHHHh
Q 015329          337 CQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       337 ~~~g~~~~a~~~~~~m~~  354 (409)
                      ...|++++|...|+++++
T Consensus        87 ~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           87 YGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            444555555544444443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.25  E-value=1.1e-05  Score=62.08  Aligned_cols=99  Identities=13%  Similarity=0.008  Sum_probs=55.4

Q ss_pred             HhhHHHHHHHHHhcCCHhHHHHHHHHHHHc--------CC---------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015329          256 LATFNVRIQHLVNKRRSWQANKLMGLMQRF--------GI---------EPDEVTYNLVIKGFCRSGHLDMAKKVYSAML  318 (409)
Q Consensus       256 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  318 (409)
                      ...+......+.+.|++++|...|.+..+.        ..         +.+...|..+..+|.+.|++++|...++..+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345566666777777777777777776543        00         0122345555555555666666666665555


Q ss_pred             hCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          319 GRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       319 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      +.... +...|..+..+|...|++++|...|++.++.
T Consensus        91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            54322 4455555555555566666666555555543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.25  E-value=6.9e-06  Score=62.81  Aligned_cols=98  Identities=9%  Similarity=-0.039  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCC-CCHH
Q 015329          293 TYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLMP-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK----NWV-PSVD  362 (409)
Q Consensus       293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~  362 (409)
                      .+..+...+...|++++|.+.+++..+.    +..+ ....+..+...+...|++++|.+.+++..+.    +.. ....
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            4444555555555555555555554332    0000 1234455555566666666666666555432    100 1123


Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329          363 TISALLEGLKKNNQPCKANTIMALVQRR  390 (409)
Q Consensus       363 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  390 (409)
                      ++..+...+...|++++|.+.+++..+.
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4555666666777777777777665543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.23  E-value=1.4e-05  Score=61.09  Aligned_cols=97  Identities=5%  Similarity=-0.063  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHH
Q 015329          258 TFNVRIQHLVNKRRSWQANKLMGLMQRF----GIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----RLM-PNRK  327 (409)
Q Consensus       258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~  327 (409)
                      ++..+...+...|++++|...+++..+.    +..+ ....+..+...+...|++++|.+.+++..+.    +.. ....
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            3344444444555555555555444321    0000 1234455555666666666666666655432    111 1123


Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329          328 IYQTMIHYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       328 ~~~~li~~~~~~g~~~~a~~~~~~m~~  354 (409)
                      .+..+...+...|++++|.+.+++..+
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            455666666777777777777766543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.22  E-value=3.9e-06  Score=77.06  Aligned_cols=119  Identities=9%  Similarity=0.007  Sum_probs=71.2

Q ss_pred             HHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 015329          229 SAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLD  308 (409)
Q Consensus       229 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  308 (409)
                      ..+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|...+++..+.... +...+..+..+|.+.|+++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence            34556677777777777776653 334666677777777777777777777777665422 4566666677777777777


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHhHHHHHHH
Q 015329          309 MAKKVYSAMLGRRLMPNRKIYQTMIHY--LCQEGDFNLAYIMCK  350 (409)
Q Consensus       309 ~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~  350 (409)
                      +|.+.|++..+.... +...+..+..+  +.+.|++++|.+.++
T Consensus        92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            777777776654221 22333333333  666677777776666

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.21  E-value=1.8e-05  Score=57.56  Aligned_cols=95  Identities=8%  Similarity=-0.098  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329          189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN  268 (409)
Q Consensus       189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  268 (409)
                      +..+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|+..|++..+.. +.+...+..+..++..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            334445556666666666666666654322 45555556666666666666666666665543 2344555555566666


Q ss_pred             cCCHhHHHHHHHHHHHc
Q 015329          269 KRRSWQANKLMGLMQRF  285 (409)
Q Consensus       269 ~~~~~~a~~~~~~~~~~  285 (409)
                      .|++++|...+++..+.
T Consensus        98 ~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           98 EHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            66666666666655543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.19  E-value=3.4e-06  Score=61.01  Aligned_cols=86  Identities=12%  Similarity=-0.009  Sum_probs=50.0

Q ss_pred             cCCHhHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 015329          269 KRRSWQANKLMGLMQRFGI--EPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAY  346 (409)
Q Consensus       269 ~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  346 (409)
                      .|++++|+..|++..+.+.  +-+...+..+..+|...|++++|...|++..+.... +...+..+..++...|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            4666666777766665431  113445566666666667777777666666655332 4555666666666666666666


Q ss_pred             HHHHHHHhC
Q 015329          347 IMCKDSMKK  355 (409)
Q Consensus       347 ~~~~~m~~~  355 (409)
                      ..+++.++.
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666666554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.17  E-value=2.7e-05  Score=71.17  Aligned_cols=123  Identities=11%  Similarity=-0.043  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC---------------HhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329          221 VITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN---------------LATFNVRIQHLVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       221 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  285 (409)
                      ...|..+...+.+.|++++|...|++..+.. +.+               ...|..+..+|.+.|++++|+..+++..+.
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            4456666777777777777777777776642 112               355666666666666666666666666655


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 015329          286 GIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAY  346 (409)
Q Consensus       286 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  346 (409)
                      ... +...|..+..+|...|++++|...|++..+.... +...+..+..++.+.|+.+++.
T Consensus       347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            322 4555666666666666666666666666654221 3344555555555555555544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.16  E-value=8.1e-06  Score=71.38  Aligned_cols=156  Identities=8%  Similarity=-0.075  Sum_probs=83.7

Q ss_pred             CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 015329          220 DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIK  299 (409)
Q Consensus       220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~  299 (409)
                      ....+..+...+.+.|++++|...|++....  .|+...       +...++..++...+.          ...|..+..
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~  238 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence            3556777778888899999999999988775  343321       122333333332221          136777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhCCChH
Q 015329          300 GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEG-LKKNNQPC  378 (409)
Q Consensus       300 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~~  378 (409)
                      +|.+.|++++|...++..++... .+...|..+..+|...|++++|...|++.++.. +-+...+..+... ....+..+
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999887643 267888899999999999999999999877653 2234445544444 33456678


Q ss_pred             HHHHHHHHHHhcCCCCCc
Q 015329          379 KANTIMALVQRRVPHFSS  396 (409)
Q Consensus       379 ~a~~~~~~~~~~~~~~~~  396 (409)
                      .+.+.+..+.+..|..+.
T Consensus       317 ~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          317 KQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHhhCCCCCCCC
Confidence            888889888887776554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.15  E-value=2.2e-05  Score=72.13  Aligned_cols=124  Identities=8%  Similarity=-0.025  Sum_probs=98.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329          189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN  268 (409)
Q Consensus       189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  268 (409)
                      +..+...+.+.|++++|++.|++..+.... +..+|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|..
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~   86 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA   86 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            334455678899999999999999986433 68899999999999999999999999999874 4577889999999999


Q ss_pred             cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 015329          269 KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKG--FCRSGHLDMAKKVYS  315 (409)
Q Consensus       269 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~  315 (409)
                      .|++++|...|++..+.... +...+..+..+  +.+.|++++|.+.++
T Consensus        87 ~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           87 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999886432 33444445444  888899999999988

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.14  E-value=9e-05  Score=54.20  Aligned_cols=94  Identities=13%  Similarity=0.087  Sum_probs=45.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 015329          298 IKGFCRSGHLDMAKKVYSAMLGRRLMPNR---KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPS---VDTISALLEGL  371 (409)
Q Consensus       298 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~  371 (409)
                      ...+...|++++|...|+...+.... +.   ..+..+..++...|++++|...|++..+.. +.+   ...+..+..++
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~   86 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence            33444555555555555555443211 11   244445555555555555555555554432 112   34445555555


Q ss_pred             HhCCChHHHHHHHHHHHhcCCC
Q 015329          372 KKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       372 ~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      .+.|++++|.+.++++.+..|.
T Consensus        87 ~~~g~~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           87 YGEGKNTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHcCCHHHHHHHHHHHHHHCCC
Confidence            5555555555555555555443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.13  E-value=4.9e-06  Score=60.16  Aligned_cols=55  Identities=9%  Similarity=-0.098  Sum_probs=22.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHH
Q 015329          118 IMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFL  173 (409)
Q Consensus       118 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  173 (409)
                      +..+..+|...|++++|++.|++..+.. +-+..++..+..++...|++++|...+
T Consensus        30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~   84 (117)
T 3k9i_A           30 YLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELL   84 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3334444444444444444444443332 222333333444444444444444433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.09  E-value=5.4e-05  Score=66.96  Aligned_cols=91  Identities=10%  Similarity=-0.106  Sum_probs=62.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329          290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLE  369 (409)
Q Consensus       290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~  369 (409)
                      +...|..+..+|.+.|++++|.+.+++.++.... +...|..+..+|...|++++|.+.|++.++.. +.+...+..+..
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~  349 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            3456677777777788888888888777765322 56677777777778888888888887776653 335556666666


Q ss_pred             HHHhCCChHHHHH
Q 015329          370 GLKKNNQPCKANT  382 (409)
Q Consensus       370 ~~~~~g~~~~a~~  382 (409)
                      ++.+.++.+++.+
T Consensus       350 ~~~~~~~~~~a~k  362 (370)
T 1ihg_A          350 VKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666555543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.07  E-value=7.2e-05  Score=68.31  Aligned_cols=131  Identities=7%  Similarity=-0.055  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPD--------------VITYTTLISAFYKDNRPEIGNGLWNLMVCKG  251 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  251 (409)
                      ...|..+...|.+.|++++|+..|++..+......              ...|..+..+|.+.|++++|+..++...+..
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            45677888889999999999999998887432211              5788888999999999999999999998874


Q ss_pred             CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 015329          252 CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKK-VYSAML  318 (409)
Q Consensus       252 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~-~~~~m~  318 (409)
                       +.+...|..+..+|...|++++|...|++..+.... +...+..+..++.+.++.+++.+ ++..|.
T Consensus       348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             457888899999999999999999999999876432 55677788888888888877653 455444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.06  E-value=0.0004  Score=65.00  Aligned_cols=177  Identities=6%  Similarity=-0.083  Sum_probs=131.4

Q ss_pred             hcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 015329          198 EMGI-LDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNR----------PEIGNGLWNLMVCKGCFPNLATFNVRIQHL  266 (409)
Q Consensus       198 ~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  266 (409)
                      +.|+ -++|++.++++...+.. +..+|+.--..+...|+          ++++++.++.+.+.. +-+..+|+.-.-.+
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l  117 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL  117 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            3444 45678888888886544 56667766666666666          888888898888864 55777888877778


Q ss_pred             HhcC--CHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----
Q 015329          267 VNKR--RSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSG-HLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE----  339 (409)
Q Consensus       267 ~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----  339 (409)
                      .+.+  +++++++.++++.+...+ +...|+.-...+.+.| .++++++.++++++..+. |...|+.....+.+.    
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~  195 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP  195 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred             HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence            8888  679999999999887654 7788887777777888 888999999988887655 778888777776653    


Q ss_pred             ----------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 015329          340 ----------GDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCK  379 (409)
Q Consensus       340 ----------g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~  379 (409)
                                +.++++++.+++.+... +-+...|..+-..+.+.++.++
T Consensus       196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence                      45788888888887764 5566777777666666666443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.04  E-value=0.00011  Score=56.34  Aligned_cols=99  Identities=7%  Similarity=-0.020  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKL--------GV---------KPDVITYTTLISAFYKDNRPEIGNGLWNLMV  248 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------g~---------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  248 (409)
                      ...+......+.+.|++++|+..|.+....        ..         ..+...|..+..+|.+.|++++|+..++...
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            445677777888888888888888877653        00         0012334444444444444444444444444


Q ss_pred             hcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329          249 CKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       249 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  285 (409)
                      +.. +.+...|..+..+|...|++++|...|+...+.
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            432 223344444444444444444444444444433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.02  E-value=8.1e-05  Score=65.83  Aligned_cols=139  Identities=6%  Similarity=-0.175  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 015329          187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHL  266 (409)
Q Consensus       187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  266 (409)
                      ..+..+...+.+.|++++|++.|++..+.-  ++.          ......       ....+. .+.+...|..+..+|
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~-------~~~~~~-~~~~~~~~~nla~~~  283 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAED-------ADGAKL-QPVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCH-------HHHGGG-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccCh-------HHHHHH-HHHHHHHHHHHHHHH
Confidence            346667777888888888888888776520  000          000000       000001 012345666666677


Q ss_pred             HhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 015329          267 VNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAY  346 (409)
Q Consensus       267 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  346 (409)
                      .+.|++++|+..+++..+.... +...+..+..+|...|++++|.+.|++..+.... +...+..+..++...++.+++.
T Consensus       284 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777665322 4566666777777777777777777776655322 4555666666666666666554


Q ss_pred             H
Q 015329          347 I  347 (409)
Q Consensus       347 ~  347 (409)
                      +
T Consensus       362 k  362 (370)
T 1ihg_A          362 K  362 (370)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.98  E-value=7.5e-05  Score=56.34  Aligned_cols=100  Identities=9%  Similarity=-0.075  Sum_probs=64.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-----CCC
Q 015329          295 NLVIKGFCRSGHLDMAKKVYSAMLGRRLMP------N-----RKIYQTMIHYLCQEGDFNLAYIMCKDSMKK-----NWV  358 (409)
Q Consensus       295 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p------~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~  358 (409)
                      ......+.+.|++++|+..|++.++.....      +     ...|..+..++.+.|++++|+..+++.++.     .+.
T Consensus        15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~   94 (159)
T 2hr2_A           15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   94 (159)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence            344444555666666666666655442110      1     226777777777788888887777777664     113


Q ss_pred             C-CHHHH----HHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          359 P-SVDTI----SALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       359 ~-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      | +...|    .....++...|++++|+..|++..+..|..
T Consensus        95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            4 44566    777888888888888888888887776554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.92  E-value=0.0012  Score=61.90  Aligned_cols=158  Identities=11%  Similarity=-0.064  Sum_probs=129.1

Q ss_pred             ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC----------HhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 015329          236 RPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRR----------SWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSG  305 (409)
Q Consensus       236 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  305 (409)
                      ..++|++.++.+...+ +-+...|+.--.++...|+          ++++++.++.+.+...+ +...|+.-.-.+.+.|
T Consensus        44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence            3467799999998874 4466777776666777776          89999999999988655 7888888888888889


Q ss_pred             --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC--------
Q 015329          306 --HLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG-DFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKN--------  374 (409)
Q Consensus       306 --~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--------  374 (409)
                        +++++++.++++.+.... |...|+.-...+.+.| .++++++.++++++.. +-+...|+.....+.+.        
T Consensus       122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence              779999999999998666 8888988888888888 8999999999998876 56788888877776663        


Q ss_pred             ------CChHHHHHHHHHHHhcCCCCCch
Q 015329          375 ------NQPCKANTIMALVQRRVPHFSSN  397 (409)
Q Consensus       375 ------g~~~~a~~~~~~~~~~~~~~~~~  397 (409)
                            +.++++.+.++++....|.....
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~P~~~sa  228 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTDPNDQSA  228 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSSCSHH
T ss_pred             cccccHHHHHHHHHHHHHHHhhCCCCccH
Confidence                  55799999999999998877544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.91  E-value=0.00023  Score=53.00  Aligned_cols=110  Identities=9%  Similarity=-0.155  Sum_probs=50.9

Q ss_pred             CHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhHHH
Q 015329          271 RSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ----EGDFNLAY  346 (409)
Q Consensus       271 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~  346 (409)
                      ++++|...|++..+.| .++..    |-..|...+.+++|.+.|++..+.|   +...+..+...|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            3444445555444444 12222    3333444444444555555544442   34444444444444    44555555


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhcC
Q 015329          347 IMCKDSMKKNWVPSVDTISALLEGLKK----NNQPCKANTIMALVQRRV  391 (409)
Q Consensus       347 ~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~  391 (409)
                      ++|++..+.|   +...+..|...|..    .++.++|.+.+++..+.+
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            5555554443   34444444444544    455555555555554443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.86  E-value=2.5e-05  Score=55.44  Aligned_cols=63  Identities=16%  Similarity=0.234  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          292 VTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       292 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      ..+..+...+...|++++|.+.|++..+.... +...+..+..++...|++++|.+.+++.++.
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            34444445555555555555555555443211 3444555555555555555555555555443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.83  E-value=0.00041  Score=52.33  Aligned_cols=63  Identities=11%  Similarity=-0.069  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHHcCChhhHHHHHHHHHh
Q 015329          187 FSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK-P-----DV-----ITYTTLISAFYKDNRPEIGNGLWNLMVC  249 (409)
Q Consensus       187 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~-----~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~  249 (409)
                      ..+......+.+.|++++|+..|++..+.... |     +.     ..|..+..++.+.|++++|+..++..++
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~   85 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   85 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34555666777788888888888877764322 1     11     1444444444444555544444444443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.83  E-value=0.00069  Score=50.33  Aligned_cols=50  Identities=12%  Similarity=0.003  Sum_probs=22.4

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHhCC
Q 015329          304 SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ----EGDFNLAYIMCKDSMKKN  356 (409)
Q Consensus       304 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~  356 (409)
                      .+++++|.+.|++..+.|   +...+..|...|..    .+++++|.++|++..+.|
T Consensus        74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            344444444444444432   33344444444444    444455555554444443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.82  E-value=8.7e-05  Score=64.81  Aligned_cols=149  Identities=9%  Similarity=-0.075  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH  265 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  265 (409)
                      ...+..+...+.+.|++++|...|++....  .|+...+       ...++.+++...+          ....|..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-------~~~~~~~~~~~~l----------~~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMF-------QLYGKYQDMALAV----------KNPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHH-------TCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhh-------hhcccHHHHHHHH----------HHHHHHHHHHH
Confidence            556778888899999999999999998874  3443321       1223333332221          12367778888


Q ss_pred             HHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCHhH
Q 015329          266 LVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYL-CQEGDFNL  344 (409)
Q Consensus       266 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~  344 (409)
                      |.+.|++++|...+++..+... -+...|..+..+|...|++++|...|++..+.... +...+..+.... ...+..++
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999998887643 26778888888999999999999999988765322 334444444442 33456677


Q ss_pred             HHHHHHHHHhC
Q 015329          345 AYIMCKDSMKK  355 (409)
Q Consensus       345 a~~~~~~m~~~  355 (409)
                      +..+|..|...
T Consensus       318 a~~~~~~~l~~  328 (338)
T 2if4_A          318 QKEMYKGIFKG  328 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHHhhCC
Confidence            77788777654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.81  E-value=8.7e-05  Score=67.87  Aligned_cols=126  Identities=6%  Similarity=-0.133  Sum_probs=85.6

Q ss_pred             HHHhcCCHhHHHHHHHHHHHc-----CC-Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCC-HHHHH
Q 015329          265 HLVNKRRSWQANKLMGLMQRF-----GI-EP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-----RL-MPN-RKIYQ  330 (409)
Q Consensus       265 ~~~~~~~~~~a~~~~~~~~~~-----~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~-~~~~~  330 (409)
                      .+...|++++|..++++.++.     |. .| ...+++.|..+|...|++++|..++++.++.     |. .|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            345678888888888777542     11 12 2456788888888888888888888776542     22 222 34577


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329          331 TMIHYLCQEGDFNLAYIMCKDSMKK-----N--WVPSVDTISALLEGLKKNNQPCKANTIMALVQRR  390 (409)
Q Consensus       331 ~li~~~~~~g~~~~a~~~~~~m~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  390 (409)
                      .|...|...|++++|..++++.++.     |  .+....+...+-.++...+.+++|+.++.++++.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888776542     3  1222344556667777888888888888887653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.72  E-value=0.00014  Score=52.08  Aligned_cols=80  Identities=14%  Similarity=0.039  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 015329          274 QANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSM  353 (409)
Q Consensus       274 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  353 (409)
                      .+...|++..+... .+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|...|++.+
T Consensus         3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46667777766542 25667777777788888888888888877765322 46677777777888888888888877766


Q ss_pred             hC
Q 015329          354 KK  355 (409)
Q Consensus       354 ~~  355 (409)
                      +.
T Consensus        81 ~~   82 (115)
T 2kat_A           81 AA   82 (115)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.71  E-value=0.00023  Score=65.05  Aligned_cols=124  Identities=9%  Similarity=-0.068  Sum_probs=93.2

Q ss_pred             HHHcCChhhHHHHHHHHHhcC---C---CC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CC-Cc-CHHHHHH
Q 015329          231 FYKDNRPEIGNGLWNLMVCKG---C---FP-NLATFNVRIQHLVNKRRSWQANKLMGLMQRF-----GI-EP-DEVTYNL  296 (409)
Q Consensus       231 ~~~~~~~~~a~~~~~~m~~~~---~---~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~p-~~~~~~~  296 (409)
                      +...|++++|+.++++..+..   +   .| ...+++.+..+|...|++++|..++++..+.     |. .| ...+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            456899999999998876431   1   12 3578899999999999999999999887542     32 23 2457889


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhC-----CCC-CC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329          297 VIKGFCRSGHLDMAKKVYSAMLGR-----RLM-PN-RKIYQTMIHYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       297 li~~~~~~g~~~~a~~~~~~m~~~-----~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  354 (409)
                      |...|...|++++|..++++..+.     |.. |+ ..+.+.+-.++...+.+++|+.++..+++
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887542     332 22 33456667778888999999999988865

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.67  E-value=0.00023  Score=50.85  Aligned_cols=59  Identities=10%  Similarity=-0.131  Sum_probs=23.9

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHh
Q 015329           82 AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDM  141 (409)
Q Consensus        82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m  141 (409)
                      .+..+...+...|++++|...++......+. ....+..+..+|...|++++|.+.|++.
T Consensus        21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A           21 LRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3334444444444444444444444333221 2233333444444444444444444443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.66  E-value=8e-05  Score=52.75  Aligned_cols=92  Identities=10%  Similarity=0.041  Sum_probs=58.7

Q ss_pred             CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HH
Q 015329          255 NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN-------RK  327 (409)
Q Consensus       255 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~  327 (409)
                      +...+..+...+...|++++|...|++..+.... +...+..+..+|.+.|++++|.+.+++..+..  |+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence            3455666667777777777777777777665422 56667777777777777888877777777652  33       34


Q ss_pred             HHHHHHHHHHHcCCHhHHHHHH
Q 015329          328 IYQTMIHYLCQEGDFNLAYIMC  349 (409)
Q Consensus       328 ~~~~li~~~~~~g~~~~a~~~~  349 (409)
                      .+..+..++...|+.++|...+
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhHH
Confidence            4455555555555555554433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.62  E-value=0.00084  Score=45.24  Aligned_cols=57  Identities=16%  Similarity=0.252  Sum_probs=22.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 015329          296 LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSM  353 (409)
Q Consensus       296 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  353 (409)
                      .+...+...|++++|...+++..+.... +...+..+..++...|++++|...+++..
T Consensus        14 ~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~   70 (91)
T 1na3_A           14 NLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKAL   70 (91)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3333344444444444444443332111 23333344444444444444444444433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.60  E-value=0.001  Score=44.75  Aligned_cols=64  Identities=14%  Similarity=0.129  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK  250 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  250 (409)
                      ...+..+...+...|++++|+..|++..+.... +...+..+...+.+.|++++|...+++..+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            344555555566666666666666665554322 3445555555555555555555555555543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.40  E-value=0.00054  Score=47.56  Aligned_cols=64  Identities=8%  Similarity=0.010  Sum_probs=45.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329          290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  354 (409)
                      +...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|.+.|++.++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4566777777777778888888888777766433 455677777777777888888777776654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.36  E-value=0.00043  Score=52.08  Aligned_cols=51  Identities=6%  Similarity=-0.020  Sum_probs=27.8

Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-----------CChHHHHHHHHHHHhcCCCC
Q 015329          343 NLAYIMCKDSMKKNWVPSVDTISALLEGLKKN-----------NQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       343 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~  394 (409)
                      ++|+..|++.++.+ +-+...|..+..+|...           |++++|++.|+++.+.+|..
T Consensus        63 ~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           63 QEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            35555555555443 33444555555555544           35666666666666666554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.35  E-value=0.0013  Score=45.57  Aligned_cols=64  Identities=17%  Similarity=0.033  Sum_probs=36.0

Q ss_pred             CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015329          255 NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG  319 (409)
Q Consensus       255 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  319 (409)
                      +...+..+..+|...|++++|...|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3445555555666666666666666665554322 344555556666666666666666655543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.32  E-value=0.001  Score=50.07  Aligned_cols=86  Identities=5%  Similarity=-0.184  Sum_probs=46.5

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh----------hHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 015329          198 EMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPE----------IGNGLWNLMVCKGCFPNLATFNVRIQHLV  267 (409)
Q Consensus       198 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~----------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~  267 (409)
                      +.+.+++|.+.++...+.... +...|..+..++...++++          +|+..|++..+.. +-+...|..+-.+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence            344566777777776665433 5666666666666665543          5555555555442 223444555555554


Q ss_pred             hcC-----------CHhHHHHHHHHHHHc
Q 015329          268 NKR-----------RSWQANKLMGLMQRF  285 (409)
Q Consensus       268 ~~~-----------~~~~a~~~~~~~~~~  285 (409)
                      ..|           ++++|...|++..+.
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            442           455555555554444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.20  E-value=0.0029  Score=43.42  Aligned_cols=88  Identities=14%  Similarity=0.096  Sum_probs=56.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 015329          297 VIKGFCRSGHLDMAKKVYSAMLGRRLMPNRK-IYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN  375 (409)
Q Consensus       297 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g  375 (409)
                      ....+.+.|++++|...++...+.... +.. .+..+..+|...|++++|.+.|++.++.. +.+...+..        +
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~   75 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------H
Confidence            345667778888888888887765322 456 77777788888888888888888877653 222233311        4


Q ss_pred             ChHHHHHHHHHHHhcCCCC
Q 015329          376 QPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       376 ~~~~a~~~~~~~~~~~~~~  394 (409)
                      .+.++...+++..+..|++
T Consensus        76 ~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHhccCccc
Confidence            4556666666555544443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.18  E-value=0.00078  Score=46.45  Aligned_cols=58  Identities=16%  Similarity=0.166  Sum_probs=39.8

Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          262 RIQHLVNKRRSWQANKLMGLMQRFGIEPDEV-TYNLVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       262 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      ....+.+.|++++|...+++..+.... +.. .+..+..+|...|++++|.+.|++..+.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            344566777777777777777665422 445 6667777777777777777777777665

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=97.07  E-value=0.044  Score=39.36  Aligned_cols=150  Identities=12%  Similarity=0.036  Sum_probs=102.0

Q ss_pred             hHHHHHHHH--HHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHH
Q 015329          116 GFIMRIMML--YGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVI  193 (409)
Q Consensus       116 ~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll  193 (409)
                      .+...|+.+  ..-.|.+++..++..+...   .-+..-||.++--....-+-+.+.++++.+-.-+++.          
T Consensus         6 el~kkLmeAK~~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis----------   72 (172)
T 1wy6_A            6 EIIRKLMDAKKFLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD----------   72 (172)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG----------
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCcH----------
Confidence            344455554  4457888888888888775   3456677777777777777777777776665444332          


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHh
Q 015329          194 KAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSW  273 (409)
Q Consensus       194 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~  273 (409)
                          ..|++..+...+-.+-     .+...++..++.....|+-++-.+++..+... .+|++...-.+..+|.+.|+..
T Consensus        73 ----~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r  142 (172)
T 1wy6_A           73 ----KCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDER  142 (172)
T ss_dssp             ----GCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHH
T ss_pred             ----hhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchh
Confidence                2345555555444432     25566677777888888888888888886543 4677777778888888888888


Q ss_pred             HHHHHHHHHHHcCCC
Q 015329          274 QANKLMGLMQRFGIE  288 (409)
Q Consensus       274 ~a~~~~~~~~~~~~~  288 (409)
                      ++.+++.+.-+.|++
T Consensus       143 ~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A          143 DATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHhhhH
Confidence            888888888887764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.05  E-value=0.0085  Score=40.71  Aligned_cols=69  Identities=6%  Similarity=-0.085  Sum_probs=45.8

Q ss_pred             CCHHHHHHHHHHHHHcCC---HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          324 PNRKIYQTMIHYLCQEGD---FNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       324 p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      .|...+..+..++...++   .++|..++++.++.. +-+......+...+.+.|++++|+..|+++.+..|+
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            355566666666654433   567777777776654 455666666667777777777777777777777666

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.01  E-value=0.0065  Score=45.17  Aligned_cols=85  Identities=12%  Similarity=0.037  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCChHHHHH
Q 015329          308 DMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG---DFNLAYIMCKDSMKKNWVP--SVDTISALLEGLKKNNQPCKANT  382 (409)
Q Consensus       308 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~  382 (409)
                      ..+.+.|.+..+.|. ++..+...+..++++++   +++++..++++..+.+ .|  ....+..+..+|.+.|++++|.+
T Consensus        15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence            344555555544443 46666666666666666   4556777777666653 23  34555556666677777777777


Q ss_pred             HHHHHHhcCCCC
Q 015329          383 IMALVQRRVPHF  394 (409)
Q Consensus       383 ~~~~~~~~~~~~  394 (409)
                      .++.+.+..|.+
T Consensus        93 y~~~lL~ieP~n  104 (152)
T 1pc2_A           93 YVRGLLQTEPQN  104 (152)
T ss_dssp             HHHHHHHHCTTC
T ss_pred             HHHHHHhcCCCC
Confidence            777777776655

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.00  E-value=0.024  Score=49.07  Aligned_cols=67  Identities=13%  Similarity=-0.013  Sum_probs=35.9

Q ss_pred             CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 015329          325 NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  393 (409)
                      +..+|..+...+...|++++|...+++++..+  |+...|..+...+.-.|++++|.+.++++.+.+|.
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            44455554444444555555555555555543  45444544455555555555555555555555543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.93  E-value=0.068  Score=52.41  Aligned_cols=153  Identities=12%  Similarity=0.022  Sum_probs=82.1

Q ss_pred             HHHhcCCCchhHHH-HHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCH
Q 015329           88 SRLAGARRFDYIEH-LLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDL  166 (409)
Q Consensus        88 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  166 (409)
                      ......+++++|.+ ++..+.      +......++..+.+.|..+.|+++.++-.            .-+......|++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~  668 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL  668 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred             hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence            33445677777766 442211      02233556667777777777776553211            113344567777


Q ss_pred             HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHH
Q 015329          167 KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNL  246 (409)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  246 (409)
                      +.|.++.+.+       .+...|..+...+.+.|+++.|.+.|.++..         |..+...+...|+.+...++-+.
T Consensus       669 ~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~  732 (814)
T 3mkq_A          669 TLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD  732 (814)
T ss_dssp             HHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence            7777776433       1456777777777777777777777776642         22334444445555554444444


Q ss_pred             HHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 015329          247 MVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMG  280 (409)
Q Consensus       247 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  280 (409)
                      ....|.      ++....+|.+.|++++|.+++.
T Consensus       733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~  760 (814)
T 3mkq_A          733 AETTGK------FNLAFNAYWIAGDIQGAKDLLI  760 (814)
T ss_dssp             HHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence            333321      2223333444455555444443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.91  E-value=0.019  Score=56.46  Aligned_cols=154  Identities=8%  Similarity=-0.041  Sum_probs=90.0

Q ss_pred             HHHHccCCHHHHHH-HHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 015329          158 KVLTESRDLKAIQA-FLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNR  236 (409)
Q Consensus       158 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~  236 (409)
                      ......++++.|.. ++..+ +      +......++..+.+.|.++.|.++.+.-        .    .-.......|+
T Consensus       607 ~~~~~~~~~~~a~~~~l~~i-~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~----~~f~~~l~~~~  667 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPNV-E------GKDSLTKIARFLEGQEYYEEALNISPDQ--------D----QKFELALKVGQ  667 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGGC-C------CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------H----HHHHHHHHHTC
T ss_pred             hHHHHhCCHHHHHHHHHhcC-C------chHHHHHHHHHHHhCCChHHheecCCCc--------c----hheehhhhcCC
Confidence            34445667776666 44221 1      0222366666777777777777654211        1    11233455677


Q ss_pred             hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015329          237 PEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSA  316 (409)
Q Consensus       237 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  316 (409)
                      +++|+++.+.+      .+...|..+...+.+.++++.|.+.|..+..         |..+...|...|+.+...++-+.
T Consensus       668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~  732 (814)
T 3mkq_A          668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD  732 (814)
T ss_dssp             HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence            77777764332      3566777777777788888887777777642         23444555556777666666555


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 015329          317 MLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKD  351 (409)
Q Consensus       317 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  351 (409)
                      ....|.      ++....+|.+.|++++|.+++.+
T Consensus       733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          733 AETTGK------FNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence            554431      34445556667777777777655

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.88  E-value=0.024  Score=49.04  Aligned_cols=64  Identities=8%  Similarity=-0.101  Sum_probs=33.4

Q ss_pred             CHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329          220 DVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  285 (409)
                      +..+|..+...+...|++++|...+++....+  |+...|..+-..+.-.|++++|.+.|++....
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            44455544444444455555555555555543  44444444445555555555555555555544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.80  E-value=0.011  Score=53.00  Aligned_cols=91  Identities=11%  Similarity=0.011  Sum_probs=61.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-----C-CCC-CHHH
Q 015329          298 IKGFCRSGHLDMAKKVYSAMLGRR---LMP----NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK-----N-WVP-SVDT  363 (409)
Q Consensus       298 i~~~~~~g~~~~a~~~~~~m~~~~---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~~-~~~~  363 (409)
                      +..+.+.|++++|..++++..+..   +.|    ...+++.+..+|...|++++|+.++++.++.     | ..| ...+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            444556778888888888776541   111    2356777788888888888888887776542     2 122 2346


Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHH
Q 015329          364 ISALLEGLKKNNQPCKANTIMALVQ  388 (409)
Q Consensus       364 ~~~l~~~~~~~g~~~~a~~~~~~~~  388 (409)
                      ++.|...|...|++++|..+++++.
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            7777788888888888888877754

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.79  E-value=0.082  Score=37.99  Aligned_cols=140  Identities=14%  Similarity=0.106  Sum_probs=93.6

Q ss_pred             hhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHH
Q 015329           55 KAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHA  134 (409)
Q Consensus        55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  134 (409)
                      .-.|..++-.++........    +..-|+-+|-.....-+-+-..++++.+.+.-.             ...+|++...
T Consensus        18 ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD-------------is~C~NlKrV   80 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD-------------LDKCQNLKSV   80 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC-------------GGGCSCTHHH
T ss_pred             HHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhhcC-------------cHhhhcHHHH
Confidence            34577777777777765543    333466666666666665666666665543311             1345566666


Q ss_pred             HHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015329          135 MDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQK  214 (409)
Q Consensus       135 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  214 (409)
                      ...+-.+     ..+....+..++.....|.-+...+++.++..  +.+|++...-.+..+|.+.|+..++.+++.+..+
T Consensus        81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A           81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            6665555     23455667778888888888888888877433  3466777788888889999999999999888888


Q ss_pred             CCCC
Q 015329          215 LGVK  218 (409)
Q Consensus       215 ~g~~  218 (409)
                      .|++
T Consensus       154 kG~k  157 (172)
T 1wy6_A          154 KGEK  157 (172)
T ss_dssp             TTCH
T ss_pred             hhhH
Confidence            8875

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.78  E-value=0.0076  Score=54.11  Aligned_cols=85  Identities=5%  Similarity=-0.114  Sum_probs=53.8

Q ss_pred             cCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-----C-CCC-CHHHHHHHHH
Q 015329          304 SGHLDMAKKVYSAMLGR---RLMP----NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK-----N-WVP-SVDTISALLE  369 (409)
Q Consensus       304 ~g~~~~a~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~~-~~~~~~~l~~  369 (409)
                      .|++++|..++++..+.   -+.|    ...+++.+..+|...|++++|..++++.++.     | -.| ...+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            46677777777765442   1111    2345677777777777777777777766542     2 122 2345777777


Q ss_pred             HHHhCCChHHHHHHHHHHH
Q 015329          370 GLKKNNQPCKANTIMALVQ  388 (409)
Q Consensus       370 ~~~~~g~~~~a~~~~~~~~  388 (409)
                      .|...|++++|..++++..
T Consensus       391 ~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHH
Confidence            7778888888877777654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.64  E-value=0.0059  Score=54.85  Aligned_cols=87  Identities=7%  Similarity=-0.101  Sum_probs=66.2

Q ss_pred             hcCCHhHHHHHHHHHHHc-----CC-CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCC-HHHHHHHH
Q 015329          268 NKRRSWQANKLMGLMQRF-----GI-EPD-EVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-----RL-MPN-RKIYQTMI  333 (409)
Q Consensus       268 ~~~~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~-~~~~~~li  333 (409)
                      ..|++++|..++++.++.     |. .|+ ..+++.|..+|...|++++|..++++.++.     |. .|+ ..+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            357889999999887652     21 122 467889999999999999999999887643     32 233 34688999


Q ss_pred             HHHHHcCCHhHHHHHHHHHHh
Q 015329          334 HYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       334 ~~~~~~g~~~~a~~~~~~m~~  354 (409)
                      ..|...|++++|..++++.++
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999988754

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.64  E-value=0.017  Score=40.21  Aligned_cols=65  Identities=11%  Similarity=0.062  Sum_probs=33.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329          290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR------LMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  354 (409)
                      +...+..|...+.+.|+++.|...|+...+.-      -.+...++..+..++.+.|++++|...+++..+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            33444455555556666666666665554320      112344555555555555555555555555554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.61  E-value=0.013  Score=52.73  Aligned_cols=93  Identities=11%  Similarity=0.000  Sum_probs=70.5

Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHcC---CCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCC-HH
Q 015329          262 RIQHLVNKRRSWQANKLMGLMQRFG---IEP----DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-----RL-MPN-RK  327 (409)
Q Consensus       262 ll~~~~~~~~~~~a~~~~~~~~~~~---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~-~~  327 (409)
                      .+..+.+.|++++|..++++..+..   +.|    ...+++.|..+|...|++++|+.++++.+..     |. .|+ ..
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            3555667889999999999887531   112    2457888999999999999999999887643     22 233 34


Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329          328 IYQTMIHYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       328 ~~~~li~~~~~~g~~~~a~~~~~~m~~  354 (409)
                      +++.|...|...|++++|..++++.++
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            688899999999999999999887764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.52  E-value=0.14  Score=39.05  Aligned_cols=99  Identities=13%  Similarity=0.134  Sum_probs=52.9

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHH
Q 015329          196 FCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQA  275 (409)
Q Consensus       196 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  275 (409)
                      ..+.|+++.|.++.+.+      -+...|..|.+.....|+++-|++.|.....         +..+.-.|.-.|+.++.
T Consensus        15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred             HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence            34556666666665554      1455666666666666666666666655433         33444445555555555


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015329          276 NKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYS  315 (409)
Q Consensus       276 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  315 (409)
                      .++-+.....|-      ++.....+...|+++++.++|.
T Consensus        80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~  113 (177)
T 3mkq_B           80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFA  113 (177)
T ss_dssp             HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHH
Confidence            544444433331      2333444445566666666554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.16  Score=38.72  Aligned_cols=130  Identities=9%  Similarity=0.059  Sum_probs=95.4

Q ss_pred             HHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 015329          229 SAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLD  308 (409)
Q Consensus       229 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  308 (409)
                      ....+.|+++.|.++.+.+      .+...|..+.......|+++-|.+.|.....         +..+.-.|.-.|+.+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred             HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence            4456789999999997765      4788999999999999999999999988752         344555667788888


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015329          309 MAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQ  388 (409)
Q Consensus       309 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  388 (409)
                      +..++-+.....|-      ++.....+.-.|+++++.++|.+.   |-.|...      ......|-.+.|.++.+.+-
T Consensus        78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~------~~A~t~g~~~~a~~~~~~~~  142 (177)
T 3mkq_B           78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY------AVAKANGDEAAASAFLEQAE  142 (177)
T ss_dssp             HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence            87777666655531      566677778899999999998652   2122211      11223678889999988764

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.18  E-value=0.055  Score=38.65  Aligned_cols=89  Identities=11%  Similarity=0.001  Sum_probs=60.5

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCChH
Q 015329          304 SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNL---AYIMCKDSMKKNWVP--SVDTISALLEGLKKNNQPC  378 (409)
Q Consensus       304 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~  378 (409)
                      ...+..+.+-|.+....|. ++..+--.+..+++++.+...   ++.+++++.+.+ .|  .......|.-++.+.|+++
T Consensus        14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~   91 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence            3344555555665554443 567776677777777776555   777888777654 23  3445566667888888888


Q ss_pred             HHHHHHHHHHhcCCCC
Q 015329          379 KANTIMALVQRRVPHF  394 (409)
Q Consensus       379 ~a~~~~~~~~~~~~~~  394 (409)
                      +|.+.++.+.+..|.+
T Consensus        92 ~A~~~~~~lL~~eP~n  107 (126)
T 1nzn_A           92 KALKYVRGLLQTEPQN  107 (126)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            8888888888888766

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.01  E-value=0.18  Score=33.97  Aligned_cols=48  Identities=13%  Similarity=0.111  Sum_probs=22.2

Q ss_pred             HhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          272 SWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       272 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      .++|..++++..+.... +......+...+.+.|++++|...|+.+.+.
T Consensus        25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34455555554444321 3444444444444555555555555554443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.85  Score=41.07  Aligned_cols=49  Identities=6%  Similarity=-0.016  Sum_probs=27.5

Q ss_pred             CCchhHHHHHHHhhh-----CCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 015329           94 RRFDYIEHLLEHQKS-----LPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMH  142 (409)
Q Consensus        94 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  142 (409)
                      |+++.|.+.+-.+.+     .....+......++..|...|+++...+.+..+.
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls   83 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS   83 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            556666665544432     1122234555566777777777777666665543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.93  E-value=0.099  Score=36.15  Aligned_cols=66  Identities=12%  Similarity=-0.109  Sum_probs=39.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Q 015329          185 DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLG------VKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK  250 (409)
Q Consensus       185 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  250 (409)
                      +..-+..+...+.+.|+++.|..+|+...+.-      .......+..+..++.+.|+++.|...++...+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            44455566666777777777777776665421      1123455556666666666666666666666553

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.67  E-value=0.05  Score=40.40  Aligned_cols=85  Identities=9%  Similarity=-0.000  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCC---CchhHHHHHHHhhhCC-CCCChhHHHHHHHHHHhcCChHHHHH
Q 015329           61 EKLFQLFKANAHNRIVIENKYAFEDTVSRLAGAR---RFDYIEHLLEHQKSLP-QGRREGFIMRIMMLYGKAGMIKHAMD  136 (409)
Q Consensus        61 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~  136 (409)
                      ..+.+.|....+.+  .++..+.-.+..++++++   ++++++.+++.+.+.. +....+.+-.|.-+|.+.|++++|.+
T Consensus        15 ~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            34555566555555  367777777888888888   6779999999888764 21234555568888899999999999


Q ss_pred             HHHHhhhcCCCCC
Q 015329          137 TFYDMHLYGCKRT  149 (409)
Q Consensus       137 ~~~~m~~~~~~~~  149 (409)
                      .++.+++.  .|+
T Consensus        93 y~~~lL~i--eP~  103 (152)
T 1pc2_A           93 YVRGLLQT--EPQ  103 (152)
T ss_dssp             HHHHHHHH--CTT
T ss_pred             HHHHHHhc--CCC
Confidence            99999876  454

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.47  E-value=0.15  Score=42.41  Aligned_cols=84  Identities=11%  Similarity=0.065  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHh
Q 015329          273 WQANKLMGLMQRFGIEPD---EVTYNLVIKGFCR-----SGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQE-GDFN  343 (409)
Q Consensus       273 ~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~  343 (409)
                      ..|...+++..+.  .|+   ...|..+...|.+     -|+.++|.+.|++.++.+..-+..++......++.. |+.+
T Consensus       180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            3455555555554  333   4456666666666     367777777777766653322355555666666663 6677


Q ss_pred             HHHHHHHHHHhCCCC
Q 015329          344 LAYIMCKDSMKKNWV  358 (409)
Q Consensus       344 ~a~~~~~~m~~~~~~  358 (409)
                      ++.+.+++.+.....
T Consensus       258 ~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          258 GFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHcCCCC
Confidence            777777776665433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.13  E-value=1.2  Score=37.07  Aligned_cols=129  Identities=9%  Similarity=-0.008  Sum_probs=74.5

Q ss_pred             ccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHH-HHHhc--CC------hhHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 015329          162 ESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIK-AFCEM--GI------LDKAYLVMVEMQKLGVKPD---VITYTTLIS  229 (409)
Q Consensus       162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~--g~------~~~a~~~~~~m~~~g~~~~---~~~~~~ll~  229 (409)
                      +.++.......+.+....   .+....|..++. .+...  |+      ...|..++++..+.  .|+   ...|..+..
T Consensus       133 ~~~~~~~~~~~l~~~~~~---dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~  207 (301)
T 3u64_A          133 FSGDEQRLHKVLSRCTRV---DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTK  207 (301)
T ss_dssp             TSSCHHHHHHHHTTCCGG---GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHH
T ss_pred             HhcchhhHHHHHHHcCcc---ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHH
Confidence            344445555555443222   223444555554 33332  32      34566666666664  344   456777777


Q ss_pred             HHHHc-----CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc-CCHhHHHHHHHHHHHcCCC--cCHHHHH
Q 015329          230 AFYKD-----NRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNK-RRSWQANKLMGLMQRFGIE--PDEVTYN  295 (409)
Q Consensus       230 ~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~--p~~~~~~  295 (409)
                      .|.+.     |+.++|.+.|++..+.+-.-+..++......++.. |+.+++.+.+++.......  |+....+
T Consensus       208 lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan  281 (301)
T 3u64_A          208 FYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV  281 (301)
T ss_dssp             HHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred             HHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence            77774     77778888887777754222356666666767663 7777777777777776555  5544433

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.07  E-value=1.1e-05  Score=71.24  Aligned_cols=265  Identities=5%  Similarity=0.042  Sum_probs=160.9

Q ss_pred             CCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHH
Q 015329           43 DKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIM  122 (409)
Q Consensus        43 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  122 (409)
                      .+..|..+-.+-.+.+...+|++.|-..       -|+..|..+|.+..+.|.+++-...+...++...  ++.+=+.|+
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi  123 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELI  123 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHH
Confidence            4455655555555556666665544332       3555677788888888888888888777665522  334445678


Q ss_pred             HHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCCh
Q 015329          123 MLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGIL  202 (409)
Q Consensus       123 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  202 (409)
                      -+|++.++..+-.+++       -.|+..-...+.+-|...|.++.|.-+|..+..          |.-|...+.+.|++
T Consensus       124 ~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------~akLAstLV~L~~y  186 (624)
T 3lvg_A          124 FALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEY  186 (624)
T ss_dssp             HHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC----------CTTTSSSSSSCSGG
T ss_pred             HHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc----------HHHHHHHHHHHHHH
Confidence            8888888765543332       146666666777778888888888777744421          22233445566666


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 015329          203 DKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLM  282 (409)
Q Consensus       203 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  282 (409)
                      ..|.+.-++      .-++.||..+-.+|...+.+..|...--.+.-     .......++..|-..|.+++.+.+++.-
T Consensus       187 q~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEag  255 (624)
T 3lvg_A          187 QAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAA  255 (624)
T ss_dssp             GSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred             HHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            666543222      23677888888888888888776544333322     1122334566777888888888877776


Q ss_pred             HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHhHHH
Q 015329          283 QRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-RLMP------NRKIYQTMIHYLCQEGDFNLAY  346 (409)
Q Consensus       283 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p------~~~~~~~li~~~~~~g~~~~a~  346 (409)
                      .... ....-+|+-|.-.|++- ++++..+-++....+ ++.-      ....|.-++-.|.+-.++|.|.
T Consensus       256 lglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          256 LGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             TTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             hCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            5322 34667777777777765 455555555443332 1111      3344667777777777777664

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=94.61  E-value=0.62  Score=31.45  Aligned_cols=47  Identities=19%  Similarity=0.176  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329          344 LAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRR  390 (409)
Q Consensus       344 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  390 (409)
                      +..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+-++.+
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K   74 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   74 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34444444444455555555555555555555555555555555433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.53  E-value=0.81  Score=33.67  Aligned_cols=53  Identities=8%  Similarity=-0.006  Sum_probs=27.7

Q ss_pred             CCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015329          270 RRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM  323 (409)
Q Consensus       270 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  323 (409)
                      +|.++|.++|+.+.+.+-.. ...|......-.+.|++..|.+++...+..+.+
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            45555555555554432222 444444444445566666666666666555544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.34  E-value=0.69  Score=33.20  Aligned_cols=74  Identities=12%  Similarity=-0.027  Sum_probs=48.2

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCH---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          321 RLMPNRKIYQTMIHYLCQEGDF---NLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       321 ~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      +-.|+..+--.+..+++++.+.   .+++.+++++.+.+-.-....+..|.-++.+.|++++|.+..+.+.+..|.+
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N  111 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  111 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence            3445666655666666666553   3567777777665411234556666677778888888888888877777765

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.28  E-value=1.1  Score=32.92  Aligned_cols=64  Identities=6%  Similarity=0.111  Sum_probs=37.5

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015329          305 GHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEG  370 (409)
Q Consensus       305 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~  370 (409)
                      +++++|.++|+.+++.+-.. ...|....+--.+.|++..|.+++...+..+ +-+...+...+.-
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~~n  137 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIALRN  137 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHHHh
Confidence            56667777777665543233 5556555665666777777777777766655 2233444444433

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.05  E-value=5  Score=39.50  Aligned_cols=256  Identities=9%  Similarity=-0.059  Sum_probs=124.6

Q ss_pred             HhcCCCchhHHHHHHHhhhCCCCCChhHHH--HHHHHHHhcCChHHHHHHHHHhhhcCC-------CCCHHhHHHHHHHH
Q 015329           90 LAGARRFDYIEHLLEHQKSLPQGRREGFIM--RIMMLYGKAGMIKHAMDTFYDMHLYGC-------KRTVKSLNAALKVL  160 (409)
Q Consensus        90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~~~~~~ll~~~  160 (409)
                      .+..|+.+++..+++.....+...++.+-.  .+.-+....|..+++.+++.......-       .+....-..+.-+.
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            456677777777766554321111222211  233344555655567776666544210       01111122222223


Q ss_pred             H--ccCCHHHHHHHHHhcCccCCCCcCHHHHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHc
Q 015329          161 T--ESRDLKAIQAFLMEVPEKFHIQFDIFSFN--IVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISA--FYKD  234 (409)
Q Consensus       161 ~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~  234 (409)
                      +  -.++.+....+. .+.....  +......  .+...++..|+-+....++..+.+..   +..+...+..+  +...
T Consensus       464 a~~GS~~eev~e~L~-~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~  537 (963)
T 4ady_A          464 AAMGSANIEVYEALK-EVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY  537 (963)
T ss_dssp             HSTTCCCHHHHHHHH-HHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred             HhcCCCCHHHHHHHH-HHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence            2  233433333333 3333211  1111112  22333456677777777777666531   33333333333  3456


Q ss_pred             CChhhHHHHHHHHHhcCCCCCHhhHH--HHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 015329          235 NRPEIGNGLWNLMVCKGCFPNLATFN--VRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKK  312 (409)
Q Consensus       235 ~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  312 (409)
                      |+.+.+..+++.+.... .|....-.  ++..+|+..|+.....++++.+.+.. ..++...-.+.-++...|+.+.+.+
T Consensus       538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r  615 (963)
T 4ady_A          538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR  615 (963)
T ss_dssp             TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred             CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence            88888888888877642 22222111  23446677888777777888777542 2233333333334445677666777


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHHh
Q 015329          313 VYSAMLGRRLMPNRKIYQTMIHYLCQEGDF-NLAYIMCKDSMK  354 (409)
Q Consensus       313 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~  354 (409)
                      +++.+.+.+ .|...--..+.-+....|.. .++..++..+..
T Consensus       616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            776555542 33333333344444444443 567777777654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.89  E-value=0.49  Score=45.42  Aligned_cols=53  Identities=21%  Similarity=0.219  Sum_probs=37.2

Q ss_pred             HHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 015329          334 HYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALV  387 (409)
Q Consensus       334 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  387 (409)
                      +-|...|+++.|+++.++....- +-+..+|..|..+|++.|+++.|+-.++-+
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34556777777777777766543 445677777777777777777777777664

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=93.87  E-value=0.47  Score=33.87  Aligned_cols=84  Identities=10%  Similarity=-0.023  Sum_probs=49.3

Q ss_pred             CCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHhH
Q 015329          270 RRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDM---AKKVYSAMLGRRLMP--NRKIYQTMIHYLCQEGDFNL  344 (409)
Q Consensus       270 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~  344 (409)
                      .....+.+-|.+....|. ++..+--.+..++.+..+...   ++.+++.+.+.+ .|  .....-.+.-++.+.|++++
T Consensus        15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence            334445555555544443 455555556666666665544   777777766653 12  23334445566777777777


Q ss_pred             HHHHHHHHHhC
Q 015329          345 AYIMCKDSMKK  355 (409)
Q Consensus       345 a~~~~~~m~~~  355 (409)
                      |.+.++.+++.
T Consensus        93 A~~~~~~lL~~  103 (126)
T 1nzn_A           93 ALKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            77777777765

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.52  E-value=1.5  Score=31.85  Aligned_cols=72  Identities=13%  Similarity=-0.012  Sum_probs=48.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCH---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          323 MPNRKIYQTMIHYLCQEGDF---NLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       323 ~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      .|+..+--.+..+++++.+.   .+++.+++++.+.+-.-.......|.-++.+.|++++|.+..+.+.+..|.+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n  110 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  110 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence            46666666666777776653   4567777777664322234455556678888888888888888888887766

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=93.00  E-value=1.4  Score=31.50  Aligned_cols=48  Identities=19%  Similarity=0.173  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329          344 LAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRV  391 (409)
Q Consensus       344 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  391 (409)
                      +..+-++.+...++.|++....+.+.+|.+.+++..|.++|+-++.+.
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~  118 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA  118 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            344444455555555666666666666666666666666665555443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.74  E-value=9.8  Score=38.93  Aligned_cols=80  Identities=8%  Similarity=0.032  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 015329          224 YTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN----LATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIK  299 (409)
Q Consensus       224 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~  299 (409)
                      |..++..+-+.+.++.+.+.-....+.....+    ...|..++.++...|++++|...+-.+.....+  ......|+.
T Consensus       902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~  979 (1139)
T 4fhn_B          902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN  979 (1139)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence            44455555555555555555444433211111    113455555555556666555555554433222  233344444


Q ss_pred             HHHhcC
Q 015329          300 GFCRSG  305 (409)
Q Consensus       300 ~~~~~g  305 (409)
                      ..|..|
T Consensus       980 ~lce~~  985 (1139)
T 4fhn_B          980 QLTKQG  985 (1139)
T ss_dssp             HHHHHC
T ss_pred             HHHhCC
Confidence            444433

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=92.50  E-value=8.9  Score=37.84  Aligned_cols=273  Identities=11%  Similarity=0.016  Sum_probs=149.3

Q ss_pred             hhhcCChHHHHHHHHHhhcCCCCCCccch--HHHHHHHHhcCCCchhHHHHHHHhhhCCCC--C---ChhHHH--HHHHH
Q 015329           54 LKAERDPEKLFQLFKANAHNRIVIENKYA--FEDTVSRLAGARRFDYIEHLLEHQKSLPQG--R---REGFIM--RIMML  124 (409)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~---~~~~~~--~l~~~  124 (409)
                      +...++.+++++++......+ -..+..+  -..+.-.++..|..+++..++.........  .   ...+..  .+.-+
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~-~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGS-RASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTS-CCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhcccc-CCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            445677788888888766422 0122222  223334456667666788877765543210  0   111111  22222


Q ss_pred             HHhcCC-hHHHHHHHHHhhhcCCCCCHHhHH--HHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCC
Q 015329          125 YGKAGM-IKHAMDTFYDMHLYGCKRTVKSLN--AALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGI  201 (409)
Q Consensus       125 ~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  201 (409)
                      .+-.|. -+++.+.+..+.... ........  .+...++-.|+.+....++..+.+..  .-+..-...+.-++.-.|+
T Consensus       463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~  539 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGR  539 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTC
T ss_pred             HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCC
Confidence            322332 245666666665422 11111122  23334556788787787775543321  1122223333345557899


Q ss_pred             hhHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 015329          202 LDKAYLVMVEMQKLGVKPDVITYT---TLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKL  278 (409)
Q Consensus       202 ~~~a~~~~~~m~~~g~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  278 (409)
                      .+.+..+++.+.... .| ..-|.   ++.-+|+..|+.....+++..+.... ..++.....+--+....|+.+.+.++
T Consensus       540 ~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl  616 (963)
T 4ady_A          540 QELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI  616 (963)
T ss_dssp             GGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred             hHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence            999999988888641 22 22233   33446777888888888998888642 23343333333355557887778888


Q ss_pred             HHHHHHcCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329          279 MGLMQRFGIEPDEVTYNLVIKGFCRSGHL-DMAKKVYSAMLGRRLMPNRKIYQTMIHYLC  337 (409)
Q Consensus       279 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  337 (409)
                      ++.+.+.+ .|....-..+..+....|.. .++.+++..+...   +|..+-...+.++.
T Consensus       617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG  672 (963)
T 4ady_A          617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALS  672 (963)
T ss_dssp             TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHH
Confidence            87776654 55555555555555555554 5788888888754   45555544444444

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.23  E-value=2.6  Score=37.10  Aligned_cols=70  Identities=10%  Similarity=0.050  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 015329          258 TFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG-----RRLMPNRKI  328 (409)
Q Consensus       258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~  328 (409)
                      ....++..+...|++.++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+     .|+.|...+
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            34445555556666666666665555443 22555666666666666666666666665433     255555443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.06  E-value=0.9  Score=43.62  Aligned_cols=128  Identities=13%  Similarity=0.067  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHhcCC-hHHHHHHHHHhhhcCCCCCHHh--HHHHHHHHHccCCH-HHHHHHHHhcCcc-----CCCCc-C-
Q 015329          117 FIMRIMMLYGKAGM-IKHAMDTFYDMHLYGCKRTVKS--LNAALKVLTESRDL-KAIQAFLMEVPEK-----FHIQF-D-  185 (409)
Q Consensus       117 ~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~-~~a~~~~~~~~~~-----~~~~~-~-  185 (409)
                      ....|+..+...++ ++.|..+|+++.+.+  |...+  ...++..+...++- -++.+++.+..+.     ....+ + 
T Consensus       250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~  327 (754)
T 4gns_B          250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA  327 (754)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence            34456666666666 577889999887764  33322  22333333333321 2233332222111     00111 1 


Q ss_pred             ---------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 015329          186 ---------IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLM  247 (409)
Q Consensus       186 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m  247 (409)
                               ....+.=.+.+...|+++.|+++-++....-. -+-.+|..|..+|...|+++.|+-.++.+
T Consensus       328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                     11222234557778999999999999887533 26789999999999999999999998887

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=92.05  E-value=4.9  Score=33.90  Aligned_cols=188  Identities=12%  Similarity=0.076  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHH--
Q 015329           60 PEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDT--  137 (409)
Q Consensus        60 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~--  137 (409)
                      .++.++-++.-.+.|.+-.-...|.++..-|.+.+++++|.+++..-               ...+.+.|+...|-++  
T Consensus        13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~   77 (312)
T 2wpv_A           13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIF   77 (312)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHH
Confidence            44444445544444433333445666777777888888888776542               2233455666655553  


Q ss_pred             --HHHhhhcCCCCCHHhHHHHHHHHHccCCH--------HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 015329          138 --FYDMHLYGCKRTVKSLNAALKVLTESRDL--------KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYL  207 (409)
Q Consensus       138 --~~~m~~~~~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~  207 (409)
                        .+.+.+.+++++......++..+......        ..+..+-.....  ...-+...+..+...|.+.|++.+|..
T Consensus        78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~--~~~Gdp~LH~~~a~~~~~e~~~~~A~~  155 (312)
T 2wpv_A           78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSE--YKFGDPYLHNTIGSKLLEGDFVYEAER  155 (312)
T ss_dssp             HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSS--CTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence              44555667788877777777776553321        333333322211  011266778888888888888888887


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHc---CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 015329          208 VMVEMQKLGVKPDVITYTTLISAFYKD---NRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQ  283 (409)
Q Consensus       208 ~~~~m~~~g~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  283 (409)
                      .|-.    |-.-|...+..++--+...   |...++              +...-..++ -|.-.|+...|..+|+...
T Consensus       156 H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          156 YFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred             HHHh----CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence            6642    1111344454444433333   322221              222222233 3445677888877777654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.90  E-value=0.98  Score=39.83  Aligned_cols=69  Identities=13%  Similarity=-0.002  Sum_probs=54.2

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH-----HcCCCcCHHHH
Q 015329          225 TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQ-----RFGIEPDEVTY  294 (409)
Q Consensus       225 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~p~~~~~  294 (409)
                      ..++..+...|+++++...+..+.... +-+...|..+|.++.+.|+..+|++.|+...     +.|+.|+..+-
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            445667778889999888888887663 5577888899999999999999998888874     35888877653

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=91.70  E-value=5.7  Score=33.85  Aligned_cols=167  Identities=14%  Similarity=0.036  Sum_probs=97.5

Q ss_pred             chHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHH----HHhhhcCCCCCHHhHHHH
Q 015329           81 YAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTF----YDMHLYGCKRTVKSLNAA  156 (409)
Q Consensus        81 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~l  156 (409)
                      .+|.++..-|.+.+++++|.+++-.-               ...+.+.|+...|-++-    +.+.+.++++|......+
T Consensus        36 Q~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL  100 (336)
T 3lpz_A           36 QETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL  100 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            45666777788888888888876542               22334556655555543    555667778888777777


Q ss_pred             HHHHHccCCH--------HHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329          157 LKVLTESRDL--------KAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLI  228 (409)
Q Consensus       157 l~~~~~~~~~--------~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll  228 (409)
                      +..+......        ..+..+-....  ....-|......+...|.+.+++.+|...|-    .|-.++...|..++
T Consensus       101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g--~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL  174 (336)
T 3lpz_A          101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFG--DYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARME  174 (336)
T ss_dssp             HHHHTTSCTTCHHHHHHHHHHHHHHHHHS--SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHH
T ss_pred             HHHHHhCCCCCcHHHHHHHHHHHHHhhcC--CCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHH
Confidence            7777665542        23333322110  0112266777888889999999999888773    23343446665555


Q ss_pred             HHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 015329          229 SAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQ  283 (409)
Q Consensus       229 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  283 (409)
                      -.+...+...              .++...-..++ -|.-.++...|..+++...
T Consensus       175 ~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          175 YEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             HHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence            4444433321              22333333333 3445677888877666654

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=91.68  E-value=0.089  Score=47.08  Aligned_cols=226  Identities=10%  Similarity=0.104  Sum_probs=153.4

Q ss_pred             CCCcCCCCCCCCCCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCC
Q 015329           33 NKFPNREPLVDKPLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQG  112 (409)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  112 (409)
                      ..+..-+...++..+..++....+.|.++.-+..+...++..   -++..=+.|+-+|++.+++.+.++++.       .
T Consensus        72 eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~elEefl~-------~  141 (624)
T 3lvg_A           72 EAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFIN-------G  141 (624)
T ss_dssp             TTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTTTSTTS-------C
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHHHHHHc-------C
Confidence            444555566788889999999999999999999988887654   455666789999999999887555432       2


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC--------------------CCCCHHhHHHHHHHHHccCCHHHHHHH
Q 015329          113 RREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYG--------------------CKRTVKSLNAALKVLTESRDLKAIQAF  172 (409)
Q Consensus       113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~  172 (409)
                      ++..-...+..-|...|.++.|.-+|..+....                    -.-++.||..+-.+|...+++..|...
T Consensus       142 ~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqic  221 (624)
T 3lvg_A          142 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMC  221 (624)
T ss_dssp             CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred             CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHh
Confidence            344344557778888888888887776653211                    124677899999999999988555444


Q ss_pred             HHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-C
Q 015329          173 LMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK-G  251 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~  251 (409)
                      --.+.....      -...++..|-..|.+++-+.+++.-.... ......|+-|.-.|++- ++++..+.++..-.+ +
T Consensus       222 GLniIvhad------eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriN  293 (624)
T 3lvg_A          222 GLHIVVHAD------ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVN  293 (624)
T ss_dssp             HHHHHCCSS------CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSC
T ss_pred             cchhcccHH------HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcc
Confidence            322222211      12336677888999999999988877422 34778888888877764 566666555543322 1


Q ss_pred             CC------CCHhhHHHHHHHHHhcCCHhHHH
Q 015329          252 CF------PNLATFNVRIQHLVNKRRSWQAN  276 (409)
Q Consensus       252 ~~------~~~~~~~~ll~~~~~~~~~~~a~  276 (409)
                      ++      -....|.-++-.|..-.+++.|.
T Consensus       294 ipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          294 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             CTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            11      13466777777777777777654

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=91.34  E-value=2  Score=29.08  Aligned_cols=50  Identities=18%  Similarity=0.118  Sum_probs=27.7

Q ss_pred             ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc
Q 015329          130 MIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK  179 (409)
Q Consensus       130 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  179 (409)
                      +.-+..+-++.+...++.|++.+..+.+++|-+.+++..|.++++.+..+
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K   74 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   74 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34445555555555555566666666666666666665555555444433

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.00  E-value=8.4  Score=34.55  Aligned_cols=262  Identities=10%  Similarity=0.044  Sum_probs=151.3

Q ss_pred             cCChHHHHHHHHHhhh-----cCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHH--HHHHHHHHHhcC
Q 015329          128 AGMIKHAMDTFYDMHL-----YGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFS--FNIVIKAFCEMG  200 (409)
Q Consensus       128 ~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g  200 (409)
                      .|+++.|++.+-.+.+     .+..-+......++..|...++++.....+.-+..+.|..+...+  .+.++.......
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            3678889888877653     234456777888999999999998887777666556565444332  233333333344


Q ss_pred             ChhHHH--HHHHHHHh--CC-CCC---CHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCCC---HhhHHHHHHHHH
Q 015329          201 ILDKAY--LVMVEMQK--LG-VKP---DVITYTTLISAFYKDNRPEIGNGLWNLMVCK--GCFPN---LATFNVRIQHLV  267 (409)
Q Consensus       201 ~~~~a~--~~~~~m~~--~g-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~ll~~~~  267 (409)
                      ..+...  .+.+.+..  .| +..   .......|...+...|++.+|..++..+...  |....   ...+...+..|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            333221  12211111  11 111   1122356778888899999999999988643  22211   356667788888


Q ss_pred             hcCCHhHHHHHHHHHHH----cCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHH----HHHH
Q 015329          268 NKRRSWQANKLMGLMQR----FGIEPD--EVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-RLMPNRKIYQTM----IHYL  336 (409)
Q Consensus       268 ~~~~~~~a~~~~~~~~~----~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l----i~~~  336 (409)
                      ..+++.+|..++.++..    ....|+  ...+...+..+...+++.+|...|.+.... ...-|...+..+    +.+.
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~  268 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL  268 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence            99999999999888742    222232  235566777778889999988888777543 112233323222    2222


Q ss_pred             HHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC--CChHHHHHHHHHHHh
Q 015329          337 CQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKN--NQPCKANTIMALVQR  389 (409)
Q Consensus       337 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~  389 (409)
                      .-.+..+.-..+.........-++...|..++.+|...  .+++.+.+.++....
T Consensus       269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~  323 (445)
T 4b4t_P          269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN  323 (445)
T ss_dssp             HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred             HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence            22222222223333322222235677888888888764  345666555544433

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.97  E-value=6.1  Score=40.45  Aligned_cols=193  Identities=13%  Similarity=0.080  Sum_probs=109.5

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC----------------
Q 015329           83 FEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGC----------------  146 (409)
Q Consensus        83 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----------------  146 (409)
                      ...++..+...+..+.+.++..-...     ++..--.+..+|...|++++|.+.|.+... |+                
T Consensus       815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~  888 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEI  888 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccc
Confidence            33455666666777666665544322     111112245667777777777777765421 11                


Q ss_pred             -------CCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCC-CcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 015329          147 -------KRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHI-QFD--IFSFNIVIKAFCEMGILDKAYLVMVEMQKLG  216 (409)
Q Consensus       147 -------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g  216 (409)
                             ..-..-|..++..+.+.+.++.+.++-+......+- .++  ...|..+.+.+...|++++|...+-.+....
T Consensus       889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~  968 (1139)
T 4fhn_B          889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP  968 (1139)
T ss_dssp             HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred             cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence                   001133677888888888887777665433222211 111  2257888889999999999999888887654


Q ss_pred             CCCCHHHHHHHHHHHHHcCCh------------hhHHHHHHHHHhcC--CCCCHhhHHHHHHHHHhcCCHhHH-HHHHHH
Q 015329          217 VKPDVITYTTLISAFYKDNRP------------EIGNGLWNLMVCKG--CFPNLATFNVRIQHLVNKRRSWQA-NKLMGL  281 (409)
Q Consensus       217 ~~~~~~~~~~ll~~~~~~~~~------------~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~  281 (409)
                      .+  ......++..+|..|..            +++.+++....+..  ....+.-|..|=..+...|++.+| .-+|+.
T Consensus       969 ~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B          969 LK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp             SC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence            43  45566666666655543            55556665443321  111122345555555667777655 445555


Q ss_pred             HH
Q 015329          282 MQ  283 (409)
Q Consensus       282 ~~  283 (409)
                      +.
T Consensus      1047 ~~ 1048 (1139)
T 4fhn_B         1047 LS 1048 (1139)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=88.78  E-value=2.8  Score=31.42  Aligned_cols=59  Identities=5%  Similarity=-0.165  Sum_probs=31.1

Q ss_pred             hHHHHhhhhcCChHHHHHHHHHhhcCCCCCCcc-------chHHHHHHHHhcCCCchhHHHHHHHh
Q 015329           48 PPALVKLKAERDPEKLFQLFKANAHNRIVIENK-------YAFEDTVSRLAGARRFDYIEHLLEHQ  106 (409)
Q Consensus        48 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~  106 (409)
                      ...+..+...+.++.|.-+.+.+.......|+.       .++..+.+++...|++.+|...|++.
T Consensus        24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA   89 (167)
T 3ffl_A           24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA   89 (167)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            345556666666666666555543221111221       13344556666666666666666664

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=88.38  E-value=3.6  Score=29.54  Aligned_cols=50  Identities=18%  Similarity=0.118  Sum_probs=28.3

Q ss_pred             ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCcc
Q 015329          130 MIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEK  179 (409)
Q Consensus       130 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  179 (409)
                      +.-+..+-++.+...++.|++.+....+++|-+.+++..|.++++.+..+
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K  117 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK  117 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            33444555555555555666666666666666666666666666444444

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=88.32  E-value=5.8  Score=32.47  Aligned_cols=118  Identities=7%  Similarity=-0.027  Sum_probs=69.9

Q ss_pred             HHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC--CCCHHhHHHHHHHHHccCC
Q 015329           88 SRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGC--KRTVKSLNAALKVLTESRD  165 (409)
Q Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~  165 (409)
                      ..+.+.|+++++++....-.+..+. +...-..+++.++-.|++++|.+-++...+..-  .|....|..+|++=...  
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R--   81 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR--   81 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH--
Confidence            4567888999988888877666443 677777789999999999999998888876531  12223444444432110  


Q ss_pred             HHHHHHHHHh--cCccCCCCcCHHHHHHHHHHH--HhcCChhHHHHHHHHHHh
Q 015329          166 LKAIQAFLME--VPEKFHIQFDIFSFNIVIKAF--CEMGILDKAYLVMVEMQK  214 (409)
Q Consensus       166 ~~~a~~~~~~--~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~  214 (409)
                          .++|.-  ...-.+ .| ..-...++.+.  ...|+.++|.++-....+
T Consensus        82 ----~~vfaG~~~P~~~g-~~-~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e  128 (273)
T 1zbp_A           82 ----KDFAQGAATAKVLG-EN-EELTKSLVSFNLSMVSQDYEQVSELALQIEE  128 (273)
T ss_dssp             ----HHHTTSCCCEECCC-SC-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ----HHHHcCCCCCCCCC-CC-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence                112210  001111 11 22334444443  345888888888777765

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=87.45  E-value=19  Score=33.82  Aligned_cols=311  Identities=9%  Similarity=-0.030  Sum_probs=164.3

Q ss_pred             hhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhcCCh
Q 015329           53 KLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRR-EGFIMRIMMLYGKAGMI  131 (409)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~  131 (409)
                      ...+.++...+..+...+.... +.| -..|..+...+. ....+++...++.-   +..|- ...-...+..+.+.+++
T Consensus        15 ~a~~~~~~~~~~~l~~~l~~~p-L~~-yl~y~~l~~~l~-~~~~~ev~~Fl~~~---~~~p~~~~Lr~~~l~~l~~~~~w   88 (618)
T 1qsa_A           15 QAWDNRQMDVVEQMMPGLKDYP-LYP-YLEYRQITDDLM-NQPAVTVTNFVRAN---PTLPPARTLQSRFVNELARREDW   88 (618)
T ss_dssp             HHHHTTCHHHHHHHSGGGTTST-THH-HHHHHHHHHTGG-GCCHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHCCCHHHHHHHHHhhcCCC-cHH-HHHHHHHHhCcc-cCCHHHHHHHHHHC---CCChhHHHHHHHHHHHHHhCCCH
Confidence            3556688888877766664332 222 223444433332 22444555544443   32222 33444567777888888


Q ss_pred             HHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhH--HHHHH
Q 015329          132 KHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDK--AYLVM  209 (409)
Q Consensus       132 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~--a~~~~  209 (409)
                      ...++++.. .    +.+...-.....+....|+...+......+-......  ...+..++..+.+.|.+..  ...=+
T Consensus        89 ~~~l~~~~~-~----p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~--p~~c~~l~~~~~~~g~lt~~~~~~R~  161 (618)
T 1qsa_A           89 RGLLAFSPE-K----PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ--PNACDKLFSVWRASGKQDPLAYLERI  161 (618)
T ss_dssp             HHHHHHCCS-C----CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC--CTHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHHhccC-C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence            877775543 1    4455555667777888888765555444432332333  3467788888887776544  22323


Q ss_pred             HHHHhCCCCCCHHHHHHHH-----------HHHHH-cCChhhHHHHHHHHHhcCCCCCHh---hHHHHHHHHHhcCCHhH
Q 015329          210 VEMQKLGVKPDVITYTTLI-----------SAFYK-DNRPEIGNGLWNLMVCKGCFPNLA---TFNVRIQHLVNKRRSWQ  274 (409)
Q Consensus       210 ~~m~~~g~~~~~~~~~~ll-----------~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~  274 (409)
                      +.+...|-   ...-..++           ..... ..++..+......     ..++..   .+...+.-+.+ .+.+.
T Consensus       162 ~~al~~~~---~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar-~d~~~  232 (618)
T 1qsa_A          162 RLAMKAGN---TGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAVAFASVAR-QDAEN  232 (618)
T ss_dssp             HHHHHTTC---HHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHH-HCHHH
T ss_pred             HHHHHCCC---HHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHh-cCHHH
Confidence            33333321   11111111           11110 0112222211111     122222   12222333333 47889


Q ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 015329          275 ANKLMGLMQRFGIEPDEVTYNLVIK----GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCK  350 (409)
Q Consensus       275 a~~~~~~~~~~~~~p~~~~~~~li~----~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  350 (409)
                      |...+....+.+ ..+......+-.    .....+...++...+......  ..+.....-.+....+.|+++.|...|.
T Consensus       233 A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~  309 (618)
T 1qsa_A          233 ARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLA  309 (618)
T ss_dssp             HHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999998886543 223333332322    233344355666666665543  2344445555555667899999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329          351 DSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQR  389 (409)
Q Consensus       351 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  389 (409)
                      .|-.... ....-..-+.+++...|+.++|..+|..+.+
T Consensus       310 ~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          310 RLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             Hcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            8765422 2333344445788889999999999998865

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=86.69  E-value=8.4  Score=28.90  Aligned_cols=64  Identities=11%  Similarity=-0.008  Sum_probs=45.8

Q ss_pred             cchHHHHHHHHhcCCCchhHHHHHHHhhhCC---CCC-C----hhHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 015329           80 KYAFEDTVSRLAGARRFDYIEHLLEHQKSLP---QGR-R----EGFIMRIMMLYGKAGMIKHAMDTFYDMHL  143 (409)
Q Consensus        80 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  143 (409)
                      ..++..-+..+...|.++.|+-+.+.+....   ... +    ..++..+..++...|++.+|...|++.++
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            3456666888889999999998888755322   111 1    12455678889999999999999999643

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.89  E-value=14  Score=32.86  Aligned_cols=98  Identities=11%  Similarity=-0.077  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---CCCCCHhh--HH
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQKLG--VKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCK---GCFPNLAT--FN  260 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~--~~  260 (409)
                      ++..+...|.+.|+++.|.+.|.++....  ..--...+-.++..+...+++..+...+.+....   +..|+...  ..
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            46677888889999999999998888632  2333556677778888888998888888876532   22222211  00


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHc
Q 015329          261 VRIQHLVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       261 ~ll~~~~~~~~~~~a~~~~~~~~~~  285 (409)
                      .-...+...+++..|...|-+....
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhcc
Confidence            1111233468888888887776543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=84.99  E-value=3  Score=34.14  Aligned_cols=55  Identities=22%  Similarity=0.303  Sum_probs=39.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          300 GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       300 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      ...+.|++++++.....-++.... |...-..+++.+|-.|+++.|.+-++...+.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            445678888888877777766433 6777777888888888888888777765554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=84.44  E-value=9.3  Score=27.41  Aligned_cols=68  Identities=9%  Similarity=0.050  Sum_probs=33.9

Q ss_pred             CcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          288 EPDEVTYNLVIKGFCRSGH---LDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       288 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      .|+..+--.+..++.+..+   ..+++.+++++.+.+..-....+-.+.-++.+.|++++|.+..+.+++.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            3444444344444444433   3345556665555432112334444555566666666666666666554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=83.49  E-value=11  Score=27.46  Aligned_cols=72  Identities=11%  Similarity=-0.029  Sum_probs=52.0

Q ss_pred             CCccchHHHHHHHHhcCCCc---hhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCH
Q 015329           77 IENKYAFEDTVSRLAGARRF---DYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTV  150 (409)
Q Consensus        77 ~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~  150 (409)
                      .|+..+--....+++++...   .+++.+++.+.+.++.......-.|.-++.+.|++++|.+..+.+++.  .|+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n  110 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN  110 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence            45666655566777777654   468888888877655445555556888899999999999999999875  4543

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=82.39  E-value=9.3  Score=29.69  Aligned_cols=44  Identities=16%  Similarity=0.110  Sum_probs=23.2

Q ss_pred             ChHHHHHHHHHhhhcCCCCC-HHhHHHHHHHHHccCCHHHHHHHH
Q 015329          130 MIKHAMDTFYDMHLYGCKRT-VKSLNAALKVLTESRDLKAIQAFL  173 (409)
Q Consensus       130 ~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~  173 (409)
                      ...++.++|..|...||-.. ..-|......+...|++..|..+|
T Consensus        94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy  138 (202)
T 3esl_A           94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLL  138 (202)
T ss_dssp             CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34555556665555554332 233455555555556666665555

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.29  E-value=26  Score=31.22  Aligned_cols=98  Identities=6%  Similarity=-0.065  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH---cCCCcCHHHH--H
Q 015329          223 TYTTLISAFYKDNRPEIGNGLWNLMVCK--GCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQR---FGIEPDEVTY--N  295 (409)
Q Consensus       223 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~--~  295 (409)
                      +...+...|.+.|+++.|.+.+.++...  +...-...+-.++..+...+++..+...+.++..   .+..|+...-  .
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            5667888888999999999999888764  2233456677778888888899888888888743   2222322211  1


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC
Q 015329          296 LVIKGFCRSGHLDMAKKVYSAMLGR  320 (409)
Q Consensus       296 ~li~~~~~~g~~~~a~~~~~~m~~~  320 (409)
                      .-...+...+++..|...|-+....
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhcc
Confidence            1112233467777777777665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	409
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.84
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.67
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.63
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.31
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.28
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.26
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.26
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.26
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.24
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.16
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.02
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.01
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.0
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.73
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.7
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.65
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.63
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.6
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.55
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.54
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.51
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.51
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.42
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.35
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.34
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.28
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.27
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.24
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.18
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.12
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.1
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.08
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.07
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.02
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.98
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.92
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.9
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.87
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.86
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.83
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.75
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.74
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.73
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.71
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.69
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.68
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.43
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.35
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.17
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.15
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.12
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.99
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.69
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.62
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.2
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.19
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.4
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	93.95
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	92.75
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	90.86
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	90.47
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	87.16

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.3e-20  Score=167.19  Aligned_cols=343  Identities=11%  Similarity=0.005  Sum_probs=272.4

Q ss_pred             hhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChH
Q 015329           53 KLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIK  132 (409)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  132 (409)
                      ...+.|++++|++.|+.+.+..  +-+..++..+...+.+.|++++|...++.+.+..+. +...+..+..+|.+.|+++
T Consensus         8 ~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~   84 (388)
T d1w3ba_           8 REYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcccc
Confidence            3557799999999999998876  345677888999999999999999999999876543 5678888999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCHHhHHHHHHHHHc----------------------------------cCCHHHHHHHHHhcCc
Q 015329          133 HAMDTFYDMHLYGCKRTVKSLNAALKVLTE----------------------------------SRDLKAIQAFLMEVPE  178 (409)
Q Consensus       133 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----------------------------------~~~~~~a~~~~~~~~~  178 (409)
                      +|++.+....... +.+...+.........                                  .+....+...+.....
T Consensus        85 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T d1w3ba_          85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             ccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence            9999999987764 2233332222222222                                  2222223333222222


Q ss_pred             cCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhh
Q 015329          179 KFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLAT  258 (409)
Q Consensus       179 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  258 (409)
                      .  .+-+...+..+...+...|+++.|...+++..+.... +...|..+...+...|++++|...++.....+ +.+...
T Consensus       164 ~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  239 (388)
T d1w3ba_         164 T--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV  239 (388)
T ss_dssp             H--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred             c--CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence            2  1224567788888999999999999999999876433 67788999999999999999999999998875 556778


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329          259 FNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ  338 (409)
Q Consensus       259 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  338 (409)
                      +..+...+.+.|++++|...|++..+.... +...+..+...+...|++++|.+.++...... +.+...+..+...+..
T Consensus       240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         240 HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHH
Confidence            888999999999999999999999887533 67788999999999999999999999987763 3477888999999999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCchhHHHHHHhhc
Q 015329          339 EGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSSNQLSAFKSILS  407 (409)
Q Consensus       339 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  407 (409)
                      .|++++|.+.|++.++.. +-+..++..+..+|.+.|++++|.+.++++.+..|.. ...+..|-.+|.
T Consensus       318 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~lg~~~~  384 (388)
T d1w3ba_         318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-ADAYSNMGNTLK  384 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC-HHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence            999999999999988764 4567889999999999999999999999999988765 444555555553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.6e-17  Score=145.50  Aligned_cols=315  Identities=11%  Similarity=0.037  Sum_probs=252.6

Q ss_pred             HhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhH--------------
Q 015329           52 VKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGF--------------  117 (409)
Q Consensus        52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------------  117 (409)
                      ..+...|++++|++.|+.+.+.+  +.+..++..+...+.+.|++++|...+..............              
T Consensus        41 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (388)
T d1w3ba_          41 SIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME  118 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccc
Confidence            34567899999999999998876  34567888999999999999999999998876544322111              


Q ss_pred             -------------------HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCc
Q 015329          118 -------------------IMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPE  178 (409)
Q Consensus       118 -------------------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  178 (409)
                                         ...........+....+...+....... +-+...+..+...+...|+.+.|...++....
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  197 (388)
T d1w3ba_         119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT  197 (388)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHH
Confidence                               1122233344455555666666555443 34556788888999999999999999876654


Q ss_pred             cCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhh
Q 015329          179 KFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLAT  258 (409)
Q Consensus       179 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  258 (409)
                      ..  +-+...+..+...+...|++++|...+++....+.. +...+..+...+.+.|++++|...|++..+.. +-+..+
T Consensus       198 ~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~  273 (388)
T d1w3ba_         198 LD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDA  273 (388)
T ss_dssp             HC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHH
T ss_pred             hC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence            42  225677889999999999999999999999886544 67788889999999999999999999998864 456788


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329          259 FNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ  338 (409)
Q Consensus       259 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  338 (409)
                      +..+...+...|++++|...++...... +.+...+..+...+.+.|++++|.+.|++..+.... +..++..+..+|..
T Consensus       274 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~  351 (388)
T d1w3ba_         274 YCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQ  351 (388)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            9999999999999999999999988765 347788889999999999999999999999876432 57788999999999


Q ss_pred             cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 015329          339 EGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQ  376 (409)
Q Consensus       339 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~  376 (409)
                      .|++++|.+.|++.++.. +-+...|..+..+|.+.||
T Consensus       352 ~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         352 QGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            999999999999998764 4467889999999988875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.6e-14  Score=121.47  Aligned_cols=271  Identities=11%  Similarity=-0.010  Sum_probs=177.9

Q ss_pred             HHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCC
Q 015329           51 LVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGM  130 (409)
Q Consensus        51 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  130 (409)
                      -..+.+.|++++|+..|+.+.+.+  +.+..+|..+..++...|++++|...++......+. +...+..+...|...|+
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence            344667899999999999998877  345677888888999999999999999988776543 56777778888999999


Q ss_pred             hHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 015329          131 IKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMV  210 (409)
Q Consensus       131 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  210 (409)
                      +++|.+.+++.....  |+...........         .           ...+.......+..+...+.+.+|.+.|.
T Consensus       103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (323)
T d1fcha_         103 QRQACEILRDWLRYT--PAYAHLVTPAEEG---------A-----------GGAGLGPSKRILGSLLSDSLFLEVKELFL  160 (323)
T ss_dssp             HHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhc--cchHHHHHhhhhh---------h-----------hhcccccchhhHHHHHHhhHHHHHHHHHH
Confidence            999999998887642  3321110000000         0           00011111112223344455667777777


Q ss_pred             HHHhCCC-CCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCc
Q 015329          211 EMQKLGV-KPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEP  289 (409)
Q Consensus       211 ~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p  289 (409)
                      +..+... ..+..++..+...+...|++++|...++...... +-+...|..+...|...|++++|.+.|++..+.... 
T Consensus       161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-  238 (323)
T d1fcha_         161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-  238 (323)
T ss_dssp             HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence            6665322 2355667777777777888888888888777653 345667777777888888888888888877765322 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 015329          290 DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR----------RLMPNRKIYQTMIHYLCQEGDFNLAYIM  348 (409)
Q Consensus       290 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------~~~p~~~~~~~li~~~~~~g~~~~a~~~  348 (409)
                      +...+..+..+|.+.|++++|++.|++.++.          ........|..+-.++...|+.+.+...
T Consensus       239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4666777777888888888888888776541          1223445666676777777776655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.5e-13  Score=114.13  Aligned_cols=272  Identities=9%  Similarity=-0.120  Sum_probs=185.0

Q ss_pred             HHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCC
Q 015329           86 TVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRD  165 (409)
Q Consensus        86 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~  165 (409)
                      ....+.+.|++++|...|+.+.+..+. +...|..+..+|...|++++|...|.+..+.. +-+...|..+...+...|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence            455566777777777777777766443 45566667777777777777777777776653 3345566667777777777


Q ss_pred             HHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHH
Q 015329          166 LKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWN  245 (409)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  245 (409)
                      ++.|...+++....   .|+............                   ...+.......+..+...+.+.++...+.
T Consensus       103 ~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (323)
T d1fcha_         103 QRQACEILRDWLRY---TPAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFL  160 (323)
T ss_dssp             HHHHHHHHHHHHHT---STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHh---ccchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHH
Confidence            77777766554332   121110000000000                   00011111222233445566778888888


Q ss_pred             HHHhcC-CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015329          246 LMVCKG-CFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP  324 (409)
Q Consensus       246 ~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  324 (409)
                      ...+.. ...+...+..+...+...|++++|...+++....... +...|..+...|...|++++|.+.|++..+.... 
T Consensus       161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-  238 (323)
T d1fcha_         161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-  238 (323)
T ss_dssp             HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence            877643 2345677888889999999999999999999877533 6788899999999999999999999999876432 


Q ss_pred             CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 015329          325 NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK----------NWVPSVDTISALLEGLKKNNQPCKANTI  383 (409)
Q Consensus       325 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------~~~~~~~~~~~l~~~~~~~g~~~~a~~~  383 (409)
                      +...|..+..+|.+.|++++|.+.|++.++.          ........|..+-.++...|+.+.+...
T Consensus       239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6778999999999999999999999988751          2234556777777888888887766544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.1e-10  Score=95.68  Aligned_cols=231  Identities=8%  Similarity=-0.029  Sum_probs=142.8

Q ss_pred             HhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329          151 KSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEMG-ILDKAYLVMVEMQKLGVKPDVITYTTLI  228 (409)
Q Consensus       151 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll  228 (409)
                      ..|+.+...+.+.+..++|...++...+-   .| +...|+....++...| ++++|+..++...+.... +..+|..+.
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l---nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~  119 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIEL---NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHh
Confidence            35556666666677777777777666544   33 3445676666666665 477777777777765544 667777777


Q ss_pred             HHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC--
Q 015329          229 SAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGH--  306 (409)
Q Consensus       229 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--  306 (409)
                      ..+.+.|++++|+..++.+.+.. +.+...|..+...+...|++++|+..++++.+.+.. +...|+.+...+.+.+.  
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccc
Confidence            77777777777777777777653 446677777777777777777777777777776433 55666666555555444  


Q ss_pred             ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhC--CChHH
Q 015329          307 ----LDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNW-VPSVDTISALLEGLKKN--NQPCK  379 (409)
Q Consensus       307 ----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~--g~~~~  379 (409)
                          +++|++.+....+.... +...|+.+...+. ....+++.+.++...+... ..+...+..+...|...  +..+.
T Consensus       198 ~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~  275 (315)
T d2h6fa1         198 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN  275 (315)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred             hhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHH
Confidence                45677777766655322 5556665554443 3335666666665544321 22444555555555432  45555


Q ss_pred             HHHHHHHHHh
Q 015329          380 ANTIMALVQR  389 (409)
Q Consensus       380 a~~~~~~~~~  389 (409)
                      +...+++..+
T Consensus       276 ~~~~~~ka~~  285 (315)
T d2h6fa1         276 KEDILNKALE  285 (315)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6665555543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=7.5e-09  Score=89.05  Aligned_cols=297  Identities=11%  Similarity=0.003  Sum_probs=190.5

Q ss_pred             HHHHHhcCCCchhHHHHHHHhhhCCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-CC----CHHhHHHH
Q 015329           86 TVSRLAGARRFDYIEHLLEHQKSLPQGRRE----GFIMRIMMLYGKAGMIKHAMDTFYDMHLYGC-KR----TVKSLNAA  156 (409)
Q Consensus        86 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~l  156 (409)
                      ....+...|++++|++++++.....+..+.    ..+..+..+|...|++++|.+.|.+..+... .+    ....+..+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   97 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            345667788888888888877655433221    2344566778888888888888887654211 11    12345556


Q ss_pred             HHHHHccCCHHHHHHHHHhcCc---cCCC--Cc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCHHHHHH
Q 015329          157 LKVLTESRDLKAIQAFLMEVPE---KFHI--QF-DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLG----VKPDVITYTT  226 (409)
Q Consensus       157 l~~~~~~~~~~~a~~~~~~~~~---~~~~--~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~~~~  226 (409)
                      ...+...|++..+...+.+...   ..+.  .+ ....+..+...+...|+++.+...+.......    ......++..
T Consensus        98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  177 (366)
T d1hz4a_          98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  177 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            6677778888777666644321   1111  11 12345666778888899999988888877532    2223445555


Q ss_pred             HHHHHHHcCChhhHHHHHHHHHhc----CCCC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---cCHHHHHHH
Q 015329          227 LISAFYKDNRPEIGNGLWNLMVCK----GCFP--NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE---PDEVTYNLV  297 (409)
Q Consensus       227 ll~~~~~~~~~~~a~~~~~~m~~~----~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~l  297 (409)
                      ....+...++...+...+......    +..+  ....+......+...|+++.|...+.........   .....+..+
T Consensus       178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l  257 (366)
T d1hz4a_         178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI  257 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            666777788888888877765432    1111  1234555666778889999999888877654322   234556667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCC----CCHHHH
Q 015329          298 IKGFCRSGHLDMAKKVYSAMLGR----RLMPN-RKIYQTMIHYLCQEGDFNLAYIMCKDSMKK----NWV----PSVDTI  364 (409)
Q Consensus       298 i~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~----~~~~~~  364 (409)
                      ..++...|++++|...++.....    +..|+ ...+..+...|...|++++|.+.+++.++.    |..    .....+
T Consensus       258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~  337 (366)
T d1hz4a_         258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM  337 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence            88889999999999988887532    33333 346777888889999999999998877542    221    123345


Q ss_pred             HHHHHHHHhCCChHHHHH
Q 015329          365 SALLEGLKKNNQPCKANT  382 (409)
Q Consensus       365 ~~l~~~~~~~g~~~~a~~  382 (409)
                      ..++..+...++.+++.+
T Consensus       338 ~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         338 AQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHhcCCChHHHH
Confidence            556666777777666654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5e-09  Score=88.83  Aligned_cols=209  Identities=8%  Similarity=-0.012  Sum_probs=106.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccC-CHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhc
Q 015329          121 IMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESR-DLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEM  199 (409)
Q Consensus       121 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  199 (409)
                      +...+.+.+.+++|+++++++++.. +-+...|+....++...| +++++...++......  +-+..+|+.+...+.+.
T Consensus        49 ~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~~~~~~l  125 (315)
T d2h6fa1          49 FRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVLVEWL  125 (315)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHhHHHHhh
Confidence            3344445555555555555555443 233344555555554443 2455555554433321  12345555556666666


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC------Hh
Q 015329          200 GILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRR------SW  273 (409)
Q Consensus       200 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~------~~  273 (409)
                      |++++|++.++++.+.... +...|..+...+.+.|++++|+..++.+.+.+ +-+...|+.+...+.+.+.      ++
T Consensus       126 ~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~  203 (315)
T d2h6fa1         126 RDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLE  203 (315)
T ss_dssp             TCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred             ccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhH
Confidence            6666666666666654333 45666666666666666666666666666543 3344555555444444443      35


Q ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 015329          274 QANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM-PNRKIYQTMIHYL  336 (409)
Q Consensus       274 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~  336 (409)
                      +|+..+....+.... +...|+.+...+.. ...+++.+.++...+.... .+...+..++..|
T Consensus       204 ~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y  265 (315)
T d2h6fa1         204 REVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY  265 (315)
T ss_dssp             HHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence            566666666555322 45555544444333 3345555555555443222 1334444444444

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=5.5e-09  Score=89.95  Aligned_cols=272  Identities=8%  Similarity=-0.027  Sum_probs=196.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC-----HHhHHHHHHHHHccCCHHHHHHHHHhcCccC---CCCc-CHHH
Q 015329          118 IMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRT-----VKSLNAALKVLTESRDLKAIQAFLMEVPEKF---HIQF-DIFS  188 (409)
Q Consensus       118 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~  188 (409)
                      .......+...|++++|++++++..+.. +.+     ..++..+...+...|+++.|...+++.....   +..+ ....
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   93 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   93 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            3334566889999999999999987653 222     2467778889999999999999997654321   1111 2345


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHHHcCChhhHHHHHHHHHhcC----CCCCHh
Q 015329          189 FNIVIKAFCEMGILDKAYLVMVEMQK----LGVKPD---VITYTTLISAFYKDNRPEIGNGLWNLMVCKG----CFPNLA  257 (409)
Q Consensus       189 ~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~  257 (409)
                      +..+...+...|++..+...+.....    .+....   ...+..+...+...|+++.+...+.......    ......
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  173 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence            67777889999999999999887653    221111   2345567788889999999999998887642    223345


Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHH
Q 015329          258 TFNVRIQHLVNKRRSWQANKLMGLMQRF----GIEP--DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLM---PNRKI  328 (409)
Q Consensus       258 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---p~~~~  328 (409)
                      .+......+...++...+...+......    +..+  ....+..+...+...|++++|...+.........   .....
T Consensus       174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  253 (366)
T d1hz4a_         174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  253 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence            5666677888899999998888776442    1111  1334566677888999999999999987665322   23455


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329          329 YQTMIHYLCQEGDFNLAYIMCKDSMKK----NWVPS-VDTISALLEGLKKNNQPCKANTIMALVQRR  390 (409)
Q Consensus       329 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  390 (409)
                      +..+..++...|++++|...+++.+..    +..|+ ...+..+...|.+.|++++|.+.+++..+.
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            667888999999999999999887632    33333 456777889999999999999999987654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=2.8e-10  Score=93.88  Aligned_cols=203  Identities=7%  Similarity=-0.126  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQH  265 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  265 (409)
                      ..+|..+...|.+.|++++|++.|++..+.... +..+|..+..++.+.|++++|+..|++..+.. +-+..++..+..+
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~  114 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA  114 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHH
Confidence            445777778888889999999999888876544 67788888888889999999999998888864 3456677788888


Q ss_pred             HHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----
Q 015329          266 LVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGD----  341 (409)
Q Consensus       266 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----  341 (409)
                      |...|++++|...|+...+.... +......+..++.+.+..+.+..+..........+  ..++ ++..+.....    
T Consensus       115 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~  190 (259)
T d1xnfa_         115 LYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ--WGWN-IVEFYLGNISEQTL  190 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS--THHH-HHHHHTTSSCHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh--hhhh-HHHHHHHHHHHHHH
Confidence            88889999999999888776432 44444444455556666555555555555442222  1121 2222221111    


Q ss_pred             HhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCc
Q 015329          342 FNLAYIMCKDSMKKNWVP-SVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFSS  396 (409)
Q Consensus       342 ~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  396 (409)
                      .+.+...+.....  ..| ...+|..+...|...|++++|.+.+++..+..|+.-.
T Consensus       191 ~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  244 (259)
T d1xnfa_         191 MERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  244 (259)
T ss_dssp             HHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence            1112111111111  112 2346667788899999999999999999988876543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=2.7e-09  Score=90.33  Aligned_cols=192  Identities=9%  Similarity=0.003  Sum_probs=144.5

Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 015329          201 ILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMG  280 (409)
Q Consensus       201 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  280 (409)
                      ..++|..+|++..+...+.+...|...+....+.|+++.|..+|+.+.+.........|...+..+.+.|+.+.|..+|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            45778888888887544446677788888888889999999999988875433334568888888888899999999999


Q ss_pred             HHHHcCCCcCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-CC
Q 015329          281 LMQRFGIEPDEVTYNLVIK-GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKN-WV  358 (409)
Q Consensus       281 ~~~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~  358 (409)
                      .+.+.+.. +...|..... -+...|+.+.|..+|+.+.+.. .-+...|...++.+...|+++.|..+|++.+... ..
T Consensus       159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            98877543 3333333333 2344688899999999888762 3367788888998899999999999999987753 33


Q ss_pred             CC--HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          359 PS--VDTISALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       359 ~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      |.  ...|...+..-...|+.+.+.++.+++.+..+..
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            32  4578888887788899999999999888777654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=1.5e-08  Score=85.56  Aligned_cols=186  Identities=8%  Similarity=0.014  Sum_probs=132.9

Q ss_pred             HHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHH
Q 015329          166 LKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWN  245 (409)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  245 (409)
                      .+.+..+++..... ..+.+...|...+..+.+.|+++.|..+|+++.+........+|...+..+.+.|+.+.|..+|.
T Consensus        80 ~~~a~~i~~ral~~-~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          80 SDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            35666677554322 12334566777788888888888888888888876444345578888888888888888888888


Q ss_pred             HHHhcCCCCCHhhHHHHHH-HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 015329          246 LMVCKGCFPNLATFNVRIQ-HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR-LM  323 (409)
Q Consensus       246 ~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~  323 (409)
                      ...+.+ +.+...|..... -+...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+++.|..+|++..+.. ..
T Consensus       159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            887764 333334433332 2344678888999998888763 2357788888888888999999999999887763 33


Q ss_pred             C--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329          324 P--NRKIYQTMIHYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       324 p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  354 (409)
                      |  ....|...+..-...|+.+.+.++++++.+
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3  245788888877788999999888887755

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=6.9e-10  Score=95.30  Aligned_cols=213  Identities=5%  Similarity=-0.167  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCC--HHHHHHHHHhcCccCCCCcCHHHHH-HHHHHHHhcCChhHHHH
Q 015329          131 IKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRD--LKAIQAFLMEVPEKFHIQFDIFSFN-IVIKAFCEMGILDKAYL  207 (409)
Q Consensus       131 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~  207 (409)
                      +++|+.+++...+.. +-+...|..+..++...+.  .+.+...++......  +++...+. .....+...|.++.|+.
T Consensus        89 ~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~Al~  165 (334)
T d1dcea1          89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELA  165 (334)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC--chhhhhhhhHHHHHHHhccccHHHHH
Confidence            445555555554432 2334444444444444332  344444444433221  11233322 22234444555555555


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 015329          208 VMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGI  287 (409)
Q Consensus       208 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  287 (409)
                      .++.+.+.... +...|+.+...+.+.|++++|...+....+.  .|+.   ......+...+..+++...+........
T Consensus       166 ~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~  239 (334)
T d1dcea1         166 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRA  239 (334)
T ss_dssp             HHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred             HHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCc
Confidence            55555554433 4455555555555555555554433322221  0110   1112222333444444444444433321


Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329          288 EPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       288 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  354 (409)
                       ++...+..+...+...|+.++|...+.+..+.... +...+..+..++...|++++|.+.+++.++
T Consensus       240 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         240 -EPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             -CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             -chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             12223333344444444445555544444433211 223344444444445555555555554444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=2.8e-09  Score=91.45  Aligned_cols=264  Identities=7%  Similarity=-0.052  Sum_probs=189.8

Q ss_pred             CChHHHHHHHHHhhcCCCCCCccc-hHHH---HHHHHhc-------CCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHH
Q 015329           58 RDPEKLFQLFKANAHNRIVIENKY-AFED---TVSRLAG-------ARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYG  126 (409)
Q Consensus        58 ~~~~~a~~~~~~~~~~~~~~~~~~-~~~~---li~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  126 (409)
                      ...++|+++++.+.+.+   |+.. .|+.   ++..+..       .|++++|+..++...+..+. +...|..+..++.
T Consensus        43 ~~~~~al~~~~~~l~~~---P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~  118 (334)
T d1dcea1          43 ELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS  118 (334)
T ss_dssp             CCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHH
Confidence            44589999999998877   5543 3332   3333333       34477899999998876544 5666666666666


Q ss_pred             hcC--ChHHHHHHHHHhhhcCCCCCHHhHH-HHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChh
Q 015329          127 KAG--MIKHAMDTFYDMHLYGCKRTVKSLN-AALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILD  203 (409)
Q Consensus       127 ~~~--~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  203 (409)
                      ..+  ++++|...+.+..+.. +++...+. .....+...+..+.+...++......  +-+...|+.+...+.+.|+++
T Consensus       119 ~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~--p~~~~a~~~l~~~~~~~~~~~  195 (334)
T d1dcea1         119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQP  195 (334)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCC
T ss_pred             HhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCHH
Confidence            655  5899999999998765 44566654 44567778899999999997776552  235778999999999999998


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 015329          204 KAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQ  283 (409)
Q Consensus       204 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  283 (409)
                      +|...+....+.  .|+   .......+...+..+++...+....... +++...+..+...+...|+.++|...+.+..
T Consensus       196 ~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  269 (334)
T d1dcea1         196 DSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELE  269 (334)
T ss_dssp             CSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            887665544432  111   1223344567788888988888887764 4566667777888888999999999999887


Q ss_pred             HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 015329          284 RFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPN-RKIYQTMIHYLC  337 (409)
Q Consensus       284 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~  337 (409)
                      +.... +...+..+...|...|+.++|.+.++...+.  .|+ ..-|..+...+.
T Consensus       270 ~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         270 PENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             TTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred             hhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence            66422 5677788889999999999999999999876  454 445565555444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=1.3e-08  Score=83.54  Aligned_cols=128  Identities=15%  Similarity=-0.032  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHH
Q 015329          117 FIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAF  196 (409)
Q Consensus       117 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~  196 (409)
                      ++..+..+|.+.|++++|++.|++..+.. +-+..+|+.+..++.+.|+++.|...|++.....  +-+..++..+..+|
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhHHHHHHHH
Confidence            44445566666666666666666666543 3344556666666666666666666665554331  11344555666666


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 015329          197 CEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMV  248 (409)
Q Consensus       197 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  248 (409)
                      ...|++++|.+.|+...+.... +......+..++.+.+..+....+.....
T Consensus       116 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFE  166 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            6666666666666666654322 33333333333344444444444433333

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=6.2e-07  Score=69.50  Aligned_cols=123  Identities=8%  Similarity=-0.124  Sum_probs=77.0

Q ss_pred             HHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 015329          228 ISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHL  307 (409)
Q Consensus       228 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  307 (409)
                      ...+...|+++.|++.|..+    .+|+..+|..+..+|...|++++|++.|++..+.... +...|..+..+|.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence            34455667777777776643    2456666777777777777777777777777666432 566666777777777777


Q ss_pred             HHHHHHHHHHHhCCCC-C--------------CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          308 DMAKKVYSAMLGRRLM-P--------------NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       308 ~~a~~~~~~m~~~~~~-p--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      ++|.+.|++....... +              ...++..+..++.+.|++++|.+.+....+.
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            7777777776543110 0              0234445555666666666666666665554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=6.3e-07  Score=74.63  Aligned_cols=201  Identities=10%  Similarity=-0.027  Sum_probs=127.5

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----CC-CCCHhhH
Q 015329          190 NIVIKAFCEMGILDKAYLVMVEMQKL----GVKP-DVITYTTLISAFYKDNRPEIGNGLWNLMVCK----GC-FPNLATF  259 (409)
Q Consensus       190 ~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~  259 (409)
                      .-....|...|++++|.+.|.+..+.    +-.+ -..+|..+..+|.+.|++++|...++...+.    |. .....++
T Consensus        41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  120 (290)
T d1qqea_          41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK  120 (290)
T ss_dssp             HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence            33456777888888888888877642    1111 1356777888888888888888888876542    11 1123445


Q ss_pred             HHHHHHHHh-cCCHhHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CH-H
Q 015329          260 NVRIQHLVN-KRRSWQANKLMGLMQRF----GIEP-DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMP-----NR-K  327 (409)
Q Consensus       260 ~~ll~~~~~-~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~-~  327 (409)
                      ..+...|.. .|++++|...+++..+.    +..+ -..++..+...|...|++++|.++|++........     .. .
T Consensus       121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~  200 (290)
T d1qqea_         121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD  200 (290)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred             HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence            555666644 58899998888877532    2111 13456778888899999999999999887652221     11 2


Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-C---CHHHHHHHHHHHHh--CCChHHHHHHHHHHHhc
Q 015329          328 IYQTMIHYLCQEGDFNLAYIMCKDSMKKNWV-P---SVDTISALLEGLKK--NNQPCKANTIMALVQRR  390 (409)
Q Consensus       328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~---~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~  390 (409)
                      .+...+..+...|+++.|...+++..+.... +   .......++.++..  .+.+++|+..++.+.+.
T Consensus       201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l  269 (290)
T d1qqea_         201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            2344555667789999999998887765311 1   22345666666655  23467777777655544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=5e-07  Score=63.75  Aligned_cols=95  Identities=16%  Similarity=0.068  Sum_probs=61.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 015329          298 IKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQP  377 (409)
Q Consensus       298 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~  377 (409)
                      ...+.+.|++++|+..|++.++.... +...|..+..+|...|++++|+..+...++.+ +.+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence            34455666777777777766655332 55566666666777777777777777666654 55666666666777777777


Q ss_pred             HHHHHHHHHHHhcCCCC
Q 015329          378 CKANTIMALVQRRVPHF  394 (409)
Q Consensus       378 ~~a~~~~~~~~~~~~~~  394 (409)
                      ++|+..+++..+..|..
T Consensus        88 ~~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANN  104 (117)
T ss_dssp             HHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            77777777777666554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=1e-06  Score=73.38  Aligned_cols=181  Identities=10%  Similarity=-0.021  Sum_probs=125.6

Q ss_pred             HHHHHHHHcCChhhHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC-CcCHHHHH
Q 015329          226 TLISAFYKDNRPEIGNGLWNLMVCK----GCFP-NLATFNVRIQHLVNKRRSWQANKLMGLMQRF----GI-EPDEVTYN  295 (409)
Q Consensus       226 ~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~  295 (409)
                      -..+.|...|++++|.+.|.+..+.    +..+ -..+|..+..+|.+.|++++|...++...+.    |- .....++.
T Consensus        42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  121 (290)
T d1qqea_          42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF  121 (290)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence            3456788899999999999887653    2112 2468888999999999999999999987542    21 11244566


Q ss_pred             HHHHHHH-hcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-----CCH-HH
Q 015329          296 LVIKGFC-RSGHLDMAKKVYSAMLGR----RLMP-NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWV-----PSV-DT  363 (409)
Q Consensus       296 ~li~~~~-~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----~~~-~~  363 (409)
                      .+...|. ..|++++|.+.+++..+.    +..+ -..++..+...+...|++++|...|++.....-.     ... ..
T Consensus       122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~  201 (290)
T d1qqea_         122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY  201 (290)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence            6666664 469999999999987543    2111 1345788899999999999999999998765311     111 23


Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCch----hHHHHHHhh
Q 015329          364 ISALLEGLKKNNQPCKANTIMALVQRRVPHFSSN----QLSAFKSIL  406 (409)
Q Consensus       364 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~  406 (409)
                      +...+..+...|+++.|.+.+++..+..|.+...    .+..++.+|
T Consensus       202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~  248 (290)
T d1qqea_         202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV  248 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHH
Confidence            4455567788999999999999999888765432    445555554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3.9e-06  Score=64.84  Aligned_cols=85  Identities=7%  Similarity=-0.007  Sum_probs=50.2

Q ss_pred             HHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 015329          159 VLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPE  238 (409)
Q Consensus       159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~  238 (409)
                      .+...|+++.|...|.++.     +|+..+|..+...|...|++++|++.|++..+.... +...|..+..++.+.|+++
T Consensus        14 ~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHH
Confidence            3455566666666664431     234555666666666666666666666666665433 4556666666666666666


Q ss_pred             hHHHHHHHHHh
Q 015329          239 IGNGLWNLMVC  249 (409)
Q Consensus       239 ~a~~~~~~m~~  249 (409)
                      +|...|++...
T Consensus        88 ~A~~~~~kAl~   98 (192)
T d1hh8a_          88 LAIKDLKEALI   98 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=3.7e-06  Score=59.09  Aligned_cols=91  Identities=12%  Similarity=0.018  Sum_probs=58.3

Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329          263 IQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF  342 (409)
Q Consensus       263 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  342 (409)
                      ...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|+..+....+.+.. +...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCH
Confidence            34556666677777766666665422 5556666666666677777777777666665433 556666666667777777


Q ss_pred             hHHHHHHHHHHhC
Q 015329          343 NLAYIMCKDSMKK  355 (409)
Q Consensus       343 ~~a~~~~~~m~~~  355 (409)
                      ++|+..|++.++.
T Consensus        88 ~~A~~~~~~a~~~  100 (117)
T d1elwa_          88 EEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777666654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=6.2e-07  Score=70.10  Aligned_cols=100  Identities=11%  Similarity=-0.043  Sum_probs=82.5

Q ss_pred             CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015329          254 PNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMI  333 (409)
Q Consensus       254 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  333 (409)
                      |+...+......|.+.|++++|+..|.+..+... -+...|..+..+|.+.|++++|+..|+..++.... +...|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            5666777778888999999999999998887753 37788888899999999999999999998876332 577888899


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhC
Q 015329          334 HYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       334 ~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      .+|...|++++|...|++.++.
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999887653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=4.1e-06  Score=62.55  Aligned_cols=94  Identities=9%  Similarity=-0.009  Sum_probs=60.6

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 015329          191 IVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKR  270 (409)
Q Consensus       191 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~  270 (409)
                      ...+.|.+.|++++|+..|++..+.... +...|..+..+|...|++++|...|+...+.. +-+..+|..+..++...|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence            3445566677777777777777665433 56666666666667777777777777666653 345566666666666777


Q ss_pred             CHhHHHHHHHHHHHcC
Q 015329          271 RSWQANKLMGLMQRFG  286 (409)
Q Consensus       271 ~~~~a~~~~~~~~~~~  286 (409)
                      ++++|...+++.....
T Consensus        93 ~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          93 KFRAALRDYETVVKVK  108 (159)
T ss_dssp             CHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHcC
Confidence            7777776666666553

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.4e-06  Score=62.98  Aligned_cols=91  Identities=12%  Similarity=0.009  Sum_probs=58.1

Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329          263 IQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF  342 (409)
Q Consensus       263 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  342 (409)
                      ...|.+.|++++|...|++..+.... +...|..+..+|...|++++|...|+..++.... +...|..+..+|...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence            34556666677777666666665422 5666666666666677777777777766655322 455666666666677777


Q ss_pred             hHHHHHHHHHHhC
Q 015329          343 NLAYIMCKDSMKK  355 (409)
Q Consensus       343 ~~a~~~~~~m~~~  355 (409)
                      ++|...+++....
T Consensus        95 ~eA~~~~~~a~~~  107 (159)
T d1a17a_          95 RAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            7777766666654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=2.6e-06  Score=66.41  Aligned_cols=99  Identities=8%  Similarity=-0.152  Sum_probs=73.6

Q ss_pred             cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 015329          184 FDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRI  263 (409)
Q Consensus       184 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  263 (409)
                      |++..+....+.|.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..|+...+.. +-+..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence            56666666777788888888888888877765433 67777777888888888888888888877642 33566777788


Q ss_pred             HHHHhcCCHhHHHHHHHHHHH
Q 015329          264 QHLVNKRRSWQANKLMGLMQR  284 (409)
Q Consensus       264 ~~~~~~~~~~~a~~~~~~~~~  284 (409)
                      .+|.+.|++++|+..|++..+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            888888888888888877654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.5e-06  Score=61.48  Aligned_cols=99  Identities=11%  Similarity=0.039  Sum_probs=56.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---HhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 015329          296 LVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGD---FNLAYIMCKDSMKKNWVPS-VDTISALLEGL  371 (409)
Q Consensus       296 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~  371 (409)
                      .++..+...+++++|.+.|+.....+.. +..++..+..++.+.++   +++|+.++++++..+-.|+ ..++..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4555556666666666666666655322 55556666666655333   3356666666655432222 23555566666


Q ss_pred             HhCCChHHHHHHHHHHHhcCCCCC
Q 015329          372 KKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       372 ~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      .+.|++++|++.|+++.+..|.+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCH
Confidence            666666666666666666665553

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.34  E-value=0.00051  Score=57.13  Aligned_cols=274  Identities=11%  Similarity=0.057  Sum_probs=144.6

Q ss_pred             CccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHH
Q 015329           78 ENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAAL  157 (409)
Q Consensus        78 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  157 (409)
                      |+..-...+...|.+.|.++.|..+|..+.         -|..++..+.+.++++.|.+++.+.      -+..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence            344444456677778888888888887653         2345667777788888877777654      2455777777


Q ss_pred             HHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 015329          158 KVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRP  237 (409)
Q Consensus       158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~  237 (409)
                      ..+.+......+...-  .    ....+......++..|-..|.+++...+++...... ..+...++-++..|++.+ .
T Consensus        77 ~~l~~~~e~~la~i~~--~----~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~  148 (336)
T d1b89a_          77 FACVDGKEFRLAQMCG--L----HIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P  148 (336)
T ss_dssp             HHHHHTTCHHHHHHTT--T----TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H
T ss_pred             HHHHhCcHHHHHHHHH--H----HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-h
Confidence            7777776665443321  1    122244455667778888888888888887765432 346667777777777643 2


Q ss_pred             hhHHHHHHHHHhcCCCC--------CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH
Q 015329          238 EIGNGLWNLMVCKGCFP--------NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDM  309 (409)
Q Consensus       238 ~~a~~~~~~m~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  309 (409)
                      ++..+.+...... ..+        ....|.-++..|.+.|+++.|..+.-.   .  .++.......+..+.+.++.+.
T Consensus       149 ~kl~e~l~~~s~~-y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~e~  222 (336)
T d1b89a_         149 QKMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANVEL  222 (336)
T ss_dssp             HHHHHHHHHHSTT-SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHH
T ss_pred             HHHHHHHHhcccc-CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccCChHH
Confidence            3333333222110 110        112234445555555555554433221   1  1122222334444555555555


Q ss_pred             HHHHHHHHHhCCCCCCHH-----------HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 015329          310 AKKVYSAMLGRRLMPNRK-----------IYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPC  378 (409)
Q Consensus       310 a~~~~~~m~~~~~~p~~~-----------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~  378 (409)
                      ..++.....+.  .|+..           .-..++..+-+.+++.....+++.....|   +..+.+++...|+..++++
T Consensus       223 ~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~  297 (336)
T d1b89a_         223 YYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQ  297 (336)
T ss_dssp             HHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhH
Confidence            54444443332  12110           01335555666777777777776655544   4578899999999999976


Q ss_pred             HHHHHHH
Q 015329          379 KANTIMA  385 (409)
Q Consensus       379 ~a~~~~~  385 (409)
                      .-++.++
T Consensus       298 ~l~~~i~  304 (336)
T d1b89a_         298 ALRTSID  304 (336)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6555543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.28  E-value=3.8e-06  Score=58.46  Aligned_cols=87  Identities=8%  Similarity=-0.098  Sum_probs=42.1

Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 015329          263 IQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDF  342 (409)
Q Consensus       263 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  342 (409)
                      ...+.+.|++++|...|++..+.... +...|..+..++.+.|++++|...|++..+.... +...|..+..+|...|++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCH
Confidence            33444455555555555555444321 3444555555555555555555555554443222 344444555555555555


Q ss_pred             hHHHHHHHH
Q 015329          343 NLAYIMCKD  351 (409)
Q Consensus       343 ~~a~~~~~~  351 (409)
                      ++|.+.+++
T Consensus       101 ~~A~~~l~~  109 (112)
T d1hxia_         101 NAALASLRA  109 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.27  E-value=0.00061  Score=54.99  Aligned_cols=94  Identities=10%  Similarity=-0.026  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHhcCccCCCCcCHHHHHH
Q 015329          116 GFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTE----SRDLKAIQAFLMEVPEKFHIQFDIFSFNI  191 (409)
Q Consensus       116 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  191 (409)
                      ..+..|...+.+.+++++|++.|++..+.|   +...+..|...|..    ..+...+..++.... ..+   +......
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~-~~~---~~~a~~~   75 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLN---YSNGCHL   75 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc-ccc---ccchhhc
Confidence            344456666667777777777777776654   34444445555544    345566666553322 211   2233333


Q ss_pred             HHHHHHh----cCChhHHHHHHHHHHhCC
Q 015329          192 VIKAFCE----MGILDKAYLVMVEMQKLG  216 (409)
Q Consensus       192 ll~~~~~----~g~~~~a~~~~~~m~~~g  216 (409)
                      +...+..    .++.+.|...++...+.|
T Consensus        76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g  104 (265)
T d1ouva_          76 LGNLYYSGQGVSQNTNKALQYYSKACDLK  104 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             cccccccccccchhhHHHHHHHhhhhhhh
Confidence            3333322    234555666666555543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.24  E-value=7.9e-06  Score=56.79  Aligned_cols=88  Identities=9%  Similarity=-0.041  Sum_probs=50.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 015329          193 IKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRS  272 (409)
Q Consensus       193 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  272 (409)
                      ...+.+.|++++|+..|++..+.... +..+|..+..++.+.|++++|+..|+...+.. +.+...|..+..+|...|++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence            44555566666666666666654332 45556666666666666666666666655543 33455555555666666666


Q ss_pred             hHHHHHHHHH
Q 015329          273 WQANKLMGLM  282 (409)
Q Consensus       273 ~~a~~~~~~~  282 (409)
                      ++|.+.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666655543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.18  E-value=0.00095  Score=53.80  Aligned_cols=59  Identities=12%  Similarity=0.104  Sum_probs=27.6

Q ss_pred             hHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHhhh
Q 015329           82 AFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGK----AGMIKHAMDTFYDMHL  143 (409)
Q Consensus        82 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~  143 (409)
                      .+..|...+.+.+++++|.+.|++....+   +...+..|...|..    ..+...|...+.....
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~   66 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD   66 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence            34444444455555555555555554433   22222234444433    3455555555555444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.6e-05  Score=56.03  Aligned_cols=94  Identities=10%  Similarity=-0.072  Sum_probs=66.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCH---HHHHHHHHhcCccCCCCcC-HHHHHHHHHH
Q 015329          120 RIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDL---KAIQAFLMEVPEKFHIQFD-IFSFNIVIKA  195 (409)
Q Consensus       120 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~  195 (409)
                      .+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++.   +.|..++++..... ..|+ ..++..+..+
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~-~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHH
Confidence            46677778888888888888887765 56677777778777765555   45777776665431 1222 3356777788


Q ss_pred             HHhcCChhHHHHHHHHHHhC
Q 015329          196 FCEMGILDKAYLVMVEMQKL  215 (409)
Q Consensus       196 ~~~~g~~~~a~~~~~~m~~~  215 (409)
                      |.+.|++++|.+.|+++.+.
T Consensus        82 y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHh
Confidence            88888888888888888875

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.10  E-value=0.0017  Score=53.83  Aligned_cols=270  Identities=8%  Similarity=0.007  Sum_probs=158.2

Q ss_pred             CCChHHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHH
Q 015329           45 PLEPPALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMML  124 (409)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  124 (409)
                      .....+...+.+.|.++.|..+|..+.          -|..++..+.+.++++.|.+.+....      +..+|..+...
T Consensus        15 ~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~   78 (336)
T d1b89a_          15 AHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFA   78 (336)
T ss_dssp             --------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHH
Confidence            344455566778899999999998763          27778899999999999988877652      66788888888


Q ss_pred             HHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhH
Q 015329          125 YGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDK  204 (409)
Q Consensus       125 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  204 (409)
                      +.+......+.     +...+...+......++..|-..|.++....++......  -..+...++-++..|++.+ .++
T Consensus        79 l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~lyak~~-~~k  150 (336)
T d1b89a_          79 CVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFK-PQK  150 (336)
T ss_dssp             HHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTC-HHH
T ss_pred             HHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--CccchHHHHHHHHHHHHhC-hHH
Confidence            88887765542     223333456666678899999999999999999765432  2446677888999888864 444


Q ss_pred             HHHHHHHHHhCCCCCC--------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 015329          205 AYLVMVEMQKLGVKPD--------VITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQAN  276 (409)
Q Consensus       205 a~~~~~~m~~~g~~~~--------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  276 (409)
                      .++.+..... ...+.        ...|.-++-.|.+.|+++.|..+.   .+.  .++..-....+..+.+..+.+...
T Consensus       151 l~e~l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~  224 (336)
T d1b89a_         151 MREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYY  224 (336)
T ss_dssp             HHHHHHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHH
T ss_pred             HHHHHHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHH
Confidence            4444433311 11111        111333444444455554443322   121  233444455566666666666666


Q ss_pred             HHHHHHHHcCCCcCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 015329          277 KLMGLMQRFGIEPDEV-----------TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLA  345 (409)
Q Consensus       277 ~~~~~~~~~~~~p~~~-----------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  345 (409)
                      ++.....+.  .|+..           .-.-++..+.+.+++.....+++.....+   +..+.+++...|...++++.-
T Consensus       225 ~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l  299 (336)
T d1b89a_         225 RAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQAL  299 (336)
T ss_dssp             HHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHH
Confidence            555555443  22211           01234444555666666666666655544   456788889999998887654


Q ss_pred             HHHH
Q 015329          346 YIMC  349 (409)
Q Consensus       346 ~~~~  349 (409)
                      .+..
T Consensus       300 ~~~i  303 (336)
T d1b89a_         300 RTSI  303 (336)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=9.8e-05  Score=55.40  Aligned_cols=77  Identities=12%  Similarity=-0.068  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329          293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGL  371 (409)
Q Consensus       293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~  371 (409)
                      +|+.+..+|.+.|++++|+..++..++.... +...|..+..+|...|++++|...|++.++.. +-+......+-...
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            4556667777777888888777777766432 66777777777777788888888777776653 23444444444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.1e-05  Score=57.55  Aligned_cols=67  Identities=13%  Similarity=0.018  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 015329          327 KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHF  394 (409)
Q Consensus       327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  394 (409)
                      .+|+.+..+|.+.|++++|+..+++.++.+ +.+...+..+..+|...|++++|...|+++.+..|.+
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n  129 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  129 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence            457778889999999999999999999875 5688999999999999999999999999999998765

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.02  E-value=9.7e-05  Score=54.31  Aligned_cols=68  Identities=10%  Similarity=-0.046  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          327 KIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       327 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      .+|..+..+|.+.|++++|++.+++.++.+ +.+..+|..+..++...|++++|+..|+...+.+|.+.
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  135 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL  135 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            356667777888888888888888877764 55777888888888888888888888888888877653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=0.00012  Score=51.95  Aligned_cols=95  Identities=8%  Similarity=-0.017  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCC-------HhhHHH
Q 015329          189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPN-------LATFNV  261 (409)
Q Consensus       189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-------~~~~~~  261 (409)
                      +..+...|.+.|++++|++.|.+.++.+.. +...+..+..+|.+.|++++|+..++.+++.. +.+       ..+|..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence            444556667777777777777777765433 56666667777777777777777776665431 111       124444


Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHc
Q 015329          262 RIQHLVNKRRSWQANKLMGLMQRF  285 (409)
Q Consensus       262 ll~~~~~~~~~~~a~~~~~~~~~~  285 (409)
                      +...+...+++++|+..|......
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhc
Confidence            555555666666666666665543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=0.00011  Score=52.23  Aligned_cols=94  Identities=13%  Similarity=0.103  Sum_probs=52.8

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-cC-----HHHHHHHH
Q 015329          225 TTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIE-PD-----EVTYNLVI  298 (409)
Q Consensus       225 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~-----~~~~~~li  298 (409)
                      ..+.+.+.+.|++++|+..|.+.++.+ +.+...|..+..+|.+.|++++|...++.+.+.... +.     ..+|..+.
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            345556666666666666666666653 345566666666666666666666666665442110 00     12444555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh
Q 015329          299 KGFCRSGHLDMAKKVYSAMLG  319 (409)
Q Consensus       299 ~~~~~~g~~~~a~~~~~~m~~  319 (409)
                      ..+...+++++|.+.|+....
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            555555666666666655543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.2e-05  Score=72.22  Aligned_cols=227  Identities=7%  Similarity=-0.112  Sum_probs=110.7

Q ss_pred             HHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHh
Q 015329           62 KLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDM  141 (409)
Q Consensus        62 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m  141 (409)
                      +|.+.|+.+.+..  +....++..+...+...+++++|   ++++....+.. ....+ ...... ...+..+.+.++..
T Consensus         4 eA~q~~~qA~~l~--p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~-a~~~~-~e~~Lw-~~~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEVLK--ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEY-ALDKK-VEQDLW-NHAFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHHHH--GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHH-HHHHT-HHHHHH-HHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC--CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhh-HHHHh-HHHHHH-HHHHHHHHHHHHHh
Confidence            5778888876654  12234455566666666666655   55554332110 01111 100110 11245566666666


Q ss_pred             hhcCCCCCHHhHHHHHHHH--HccCCHHHHHHHHHhcCccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 015329          142 HLYGCKRTVKSLNAALKVL--TESRDLKAIQAFLMEVPEKFHIQF-DIFSFNIVIKAFCEMGILDKAYLVMVEMQKLGVK  218 (409)
Q Consensus       142 ~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~  218 (409)
                      .+....++..-....+..+  ...+.++.+...+..   ..++.| +...+..+...+.+.|+.+.|...+.......  
T Consensus        76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~---~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--  150 (497)
T d1ya0a1          76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCT---VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--  150 (497)
T ss_dssp             HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------CCHHHHHH--
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence            5543333333222222222  223444555554432   223333 34456677777778888888877776665421  


Q ss_pred             CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 015329          219 PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVI  298 (409)
Q Consensus       219 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li  298 (409)
                       ...++..+...+...|++++|...|.+..+.. +-+...|+.+...+...|+..+|...|.+..... .|...++..|.
T Consensus       151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~  227 (497)
T d1ya0a1         151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ  227 (497)
T ss_dssp             -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence             23456667777788888888888888877763 4455778888888888888888888888777665 34666777776


Q ss_pred             HHHHhc
Q 015329          299 KGFCRS  304 (409)
Q Consensus       299 ~~~~~~  304 (409)
                      ..+.+.
T Consensus       228 ~~~~~~  233 (497)
T d1ya0a1         228 KALSKA  233 (497)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            666544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.90  E-value=0.00061  Score=49.81  Aligned_cols=119  Identities=10%  Similarity=-0.047  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 015329          188 SFNIVIKAFCEMGILDKAYLVMVEMQKLGVK----PDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRI  263 (409)
Q Consensus       188 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  263 (409)
                      .+..-...+.+.|++.+|+..|.+..+.-..    ++....                    ....    .....+|..+.
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~--------------------~~~~----~~~~~~~~Nla   74 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--------------------DKKK----NIEISCNLNLA   74 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--------------------HHHH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH--------------------Hhhh----hHHHHHHhhHH
Confidence            4555666778888999999888887753111    011100                    0000    01224566677


Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015329          264 QHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTM  332 (409)
Q Consensus       264 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  332 (409)
                      .+|.+.|++++|+..+....+... .+..+|..+..++...|++++|...|+...+.... |..+...+
T Consensus        75 ~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l  141 (153)
T d2fbna1          75 TCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY  141 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred             HHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence            777777777777777777776642 26677777777777777777777777777765322 34444433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.87  E-value=0.0002  Score=53.55  Aligned_cols=62  Identities=10%  Similarity=-0.129  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      .|..+..+|.+.|++++|+..++..++.... +...|..+..++...|++++|.+.|+..++.
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3444455555555555555555555554322 4455555555555555555555555555543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.86  E-value=0.00018  Score=53.70  Aligned_cols=94  Identities=12%  Similarity=-0.007  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015329          293 TYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLK  372 (409)
Q Consensus       293 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~  372 (409)
                      .|+.+..+|.+.|++++|+..++..++... .+...|..+..++...|++++|...|+++++.. +.+......+-....
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~  143 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQK  143 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            455566777788888888888888776543 366777777888888888888888888877654 344444444444443


Q ss_pred             hCCCh-HHHHHHHHHHH
Q 015329          373 KNNQP-CKANTIMALVQ  388 (409)
Q Consensus       373 ~~g~~-~~a~~~~~~~~  388 (409)
                      +.+.. +...+++..|.
T Consensus       144 ~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         144 KAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHH
Confidence            43332 23344444443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.83  E-value=0.0005  Score=51.72  Aligned_cols=122  Identities=8%  Similarity=-0.015  Sum_probs=70.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 015329          192 VIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRR  271 (409)
Q Consensus       192 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~  271 (409)
                      ........|++++|.+.|.+.....-  ...        +......+.+...-..+...    ....+..+...+.+.|+
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~r--G~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWR--GPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCC--SST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCc--ccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence            33466777888888888888776311  100        00001111111111112111    23455666777777777


Q ss_pred             HhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 015329          272 SWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLG-----RRLMPNRKI  328 (409)
Q Consensus       272 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~  328 (409)
                      +++|+..++.+.+... -+...|..++.+|.+.|+.++|++.|+++.+     .|+.|...+
T Consensus        83 ~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          83 ASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             chHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            7777777777766643 2667777777777777777777777776533     366666544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.75  E-value=0.00044  Score=51.62  Aligned_cols=126  Identities=7%  Similarity=-0.100  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 015329          189 FNIVIKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN  268 (409)
Q Consensus       189 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  268 (409)
                      +......+...|++++|++.|.+..+.            ..............       .. -+.....|..+..++.+
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~-------~~-~~~~~~~~~nla~~~~~   89 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA-------KL-QPVALSCVLNIGACKLK   89 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG-------GG-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH-------Hh-ChhhHHHHHHHHHHHHh
Confidence            455566677788888888887776531            00000001110000       00 01244566777788889


Q ss_pred             cCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015329          269 KRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYL  336 (409)
Q Consensus       269 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  336 (409)
                      .|++++|+..+....+.... +...|..+..+|.+.|++++|.+.|+...+.... +......+..+.
T Consensus        90 ~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~  155 (169)
T d1ihga1          90 MSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK  155 (169)
T ss_dssp             TTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            99999999999998877533 6788888999999999999999999988876332 445555544443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=2.4e-05  Score=70.12  Aligned_cols=228  Identities=8%  Similarity=-0.042  Sum_probs=121.5

Q ss_pred             hHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHH-hHHHHHHHHHccCCHHHHHHHHHhc
Q 015329           98 YIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVK-SLNAALKVLTESRDLKAIQAFLMEV  176 (409)
Q Consensus        98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~  176 (409)
                      +|.+.|++.....+. ....+..+..++...|++++|   |+++...+  |+.. .++. ...+.+. .+..+...++..
T Consensus         4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~-e~~Lw~~-~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKV-EQDLWNH-AFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTH-HHHHHHH-HTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhH-HHHHHHH-HHHHHHHHHHHh
Confidence            577888888765433 233444577778888888776   66665432  3211 1111 1111111 123344444433


Q ss_pred             CccCCCCcCHHHHHHH--HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCC
Q 015329          177 PEKFHIQFDIFSFNIV--IKAFCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFP  254 (409)
Q Consensus       177 ~~~~~~~~~~~~~~~l--l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~  254 (409)
                      .+.. ..++..-....  ...+...+.++.++..+....+... ++...+..+...+.+.|+.++|...+.......   
T Consensus        76 ~k~~-~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---  150 (497)
T d1ya0a1          76 AKNR-ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---  150 (497)
T ss_dssp             HSCS-SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred             cccc-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence            2221 12222111111  1222334555666655554443322 255667778888888999999988877765532   


Q ss_pred             CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015329          255 NLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIH  334 (409)
Q Consensus       255 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  334 (409)
                      ...++..+...+...|++++|...|++..+.... +...|+.|...+...|+..+|...|.+..... .|-..++..|..
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~  228 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK  228 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence            2356777888999999999999999999887533 67899999999999999999999999988764 457788888888


Q ss_pred             HHHHcC
Q 015329          335 YLCQEG  340 (409)
Q Consensus       335 ~~~~~g  340 (409)
                      .+.+..
T Consensus       229 ~~~~~~  234 (497)
T d1ya0a1         229 ALSKAL  234 (497)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            776544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.73  E-value=0.00077  Score=50.16  Aligned_cols=127  Identities=9%  Similarity=-0.064  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 015329          186 IFSFNIVIKAFCEMGILDKAYLVMVEMQKL---GVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVR  262 (409)
Q Consensus       186 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  262 (409)
                      ...+.-....+.+.|++++|...|++....   ....+...                 ......+       ....|+.+
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-----------------~~~~~~~-------~~~~~~Nl   70 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-----------------SKASESF-------LLAAFLNL   70 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-----------------HHHHHHH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-----------------hhhcchh-------HHHHHHhH
Confidence            345666677788888888888888776531   00000000                 0000000       12346667


Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 015329          263 IQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ  338 (409)
Q Consensus       263 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  338 (409)
                      ..+|.+.|++++|+..++...+... .+...|..+..+|...|++++|...|..+.+.... +......+-.....
T Consensus        71 a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          71 AMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            7788888888888888888887653 36778888888888888888888888888876322 44444444433333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.71  E-value=0.00094  Score=50.17  Aligned_cols=89  Identities=12%  Similarity=0.003  Sum_probs=49.2

Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHc--CCC-cC------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015329          263 IQHLVNKRRSWQANKLMGLMQRF--GIE-PD------------------EVTYNLVIKGFCRSGHLDMAKKVYSAMLGRR  321 (409)
Q Consensus       263 l~~~~~~~~~~~a~~~~~~~~~~--~~~-p~------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  321 (409)
                      .......|++++|...|......  |.. ++                  ...+..+..++.+.|++++|+..++.+....
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~   97 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH   97 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC
Confidence            34667789999999999988764  211 01                  0123444444555555555555555555442


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 015329          322 LMPNRKIYQTMIHYLCQEGDFNLAYIMCKDS  352 (409)
Q Consensus       322 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  352 (409)
                      .. +...|..++.+|...|+.++|++.|+++
T Consensus        98 P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          98 PY-REPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             TT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             Cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            22 4445555555555555555555555544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.69  E-value=5.7e-05  Score=61.06  Aligned_cols=127  Identities=7%  Similarity=-0.089  Sum_probs=71.1

Q ss_pred             HhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 015329          267 VNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAY  346 (409)
Q Consensus       267 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  346 (409)
                      .+.|++++|+..+++..+.... |...+..+...++..|++++|...++...+.... +...+..+...+...+..+++.
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence            4567777777777777776433 6677777777777777777777777777765221 2333333333333222222222


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          347 IMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       347 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      .-.......+-+++...+......+...|+.++|.+.++++.+..|...
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            1111100111112223333344667777888888888888777766543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.68  E-value=0.00013  Score=58.96  Aligned_cols=124  Identities=6%  Similarity=-0.023  Sum_probs=79.8

Q ss_pred             HHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHH
Q 015329           89 RLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKA  168 (409)
Q Consensus        89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~  168 (409)
                      ...+.|++++|+..+++..+..+. +...+..+...++..|++++|.+.|+...+.. +-+...+..+...+...+..++
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHH
Confidence            345678899999999988877554 67778888899999999999999999887763 2233444444444433333333


Q ss_pred             HHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 015329          169 IQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAYLVMVEMQKL  215 (409)
Q Consensus       169 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  215 (409)
                      +..-... ....+-+++...+......+...|+.++|.+.++++.+.
T Consensus        83 a~~~~~~-~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          83 FAQGAAT-AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HTTSCCC-EECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhh-hhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            2221111 011111223344555566788889999999999888764

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.43  E-value=0.00057  Score=49.42  Aligned_cols=41  Identities=10%  Similarity=-0.040  Sum_probs=25.1

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 015329          196 FCEMGILDKAYLVMVEMQKLGVKPDVITYTTLISAFYKDNRP  237 (409)
Q Consensus       196 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~  237 (409)
                      |-+.+.+++|.+.|+...+..+. +..++..+..++...+++
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~   47 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQF   47 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhh
Confidence            34455677777777777765433 566666666666544333

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.35  E-value=0.00093  Score=48.25  Aligned_cols=76  Identities=14%  Similarity=0.076  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 015329          307 LDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEG-----------DFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNN  375 (409)
Q Consensus       307 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g  375 (409)
                      +++|+..|++.++.... +..+|..+..+|...|           .+++|.+.|++.++.  .|+...|..-+..+    
T Consensus        57 ~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~----  129 (145)
T d1zu2a1          57 IQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT----  129 (145)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH----
Confidence            34555555555544322 4445555555554432           246666666666654  45555544443333    


Q ss_pred             ChHHHHHHHHHHHhcC
Q 015329          376 QPCKANTIMALVQRRV  391 (409)
Q Consensus       376 ~~~~a~~~~~~~~~~~  391 (409)
                        ..|.+++.++.+.+
T Consensus       130 --~ka~~~~~e~~k~~  143 (145)
T d1zu2a1         130 --AKAPQLHAEAYKQG  143 (145)
T ss_dssp             --HTHHHHHHHHHHSS
T ss_pred             --HHHHHHHHHHHHHh
Confidence              34555555554443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.17  E-value=0.0089  Score=43.41  Aligned_cols=93  Identities=12%  Similarity=0.064  Sum_probs=57.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCC-CC----------CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-----CCCCC--
Q 015329          299 KGFCRSGHLDMAKKVYSAMLGRRL-MP----------NRKIYQTMIHYLCQEGDFNLAYIMCKDSMKK-----NWVPS--  360 (409)
Q Consensus       299 ~~~~~~g~~~~a~~~~~~m~~~~~-~p----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~--  360 (409)
                      ..+...|++++|++.|++.++... .|          ....|+.+..+|...|++++|.+.+++.++.     ...++  
T Consensus        17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~   96 (156)
T d2hr2a1          17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG   96 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence            344455667777776666654310 11          1345667777777778877777777766532     11122  


Q ss_pred             ---HHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 015329          361 ---VDTISALLEGLKKNNQPCKANTIMALVQRRV  391 (409)
Q Consensus       361 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  391 (409)
                         ...+..+..+|...|++++|++.|++..+..
T Consensus        97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~  130 (156)
T d2hr2a1          97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  130 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               2245667788888888888888888876543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.15  E-value=0.006  Score=44.39  Aligned_cols=90  Identities=12%  Similarity=-0.058  Sum_probs=57.2

Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCC-c----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC---
Q 015329          265 HLVNKRRSWQANKLMGLMQRFGIE-P----------DEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR-----RLMPN---  325 (409)
Q Consensus       265 ~~~~~~~~~~a~~~~~~~~~~~~~-p----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~---  325 (409)
                      .+...|++++|+..|++..+.... |          ....|+.+..+|.+.|++++|...+++.++.     ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            444556666666666666542110 1          1346677777788888888888777776542     11222   


Q ss_pred             --HHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 015329          326 --RKIYQTMIHYLCQEGDFNLAYIMCKDSMK  354 (409)
Q Consensus       326 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~  354 (409)
                        ...+..+..+|...|++++|++.|++.++
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              22466677888889999999988887654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.0017  Score=42.87  Aligned_cols=68  Identities=10%  Similarity=0.029  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHhCC-----CCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          328 IYQTMIHYLCQEGDFNLAYIMCKDSMKKN-----WVP-SVDTISALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       328 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      .+-.+...+.+.|++++|...|++.++..     ..+ ...++..+..++.+.|++++|++.++++.+..|.+.
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            34445556666666666666666654320     111 134566666777777777777777777776666554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.99  E-value=0.023  Score=38.46  Aligned_cols=141  Identities=11%  Similarity=0.014  Sum_probs=94.2

Q ss_pred             HHhcCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhH
Q 015329          125 YGKAGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDK  204 (409)
Q Consensus       125 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  204 (409)
                      +.-.|.+++..+++.+...   ..+..-||.++--....-+-+.+.++++.+-.-+++.|              .+++..
T Consensus        12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~   74 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS   74 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred             HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence            4557888888888888775   34566788888777777777777777766655444332              233333


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 015329          205 AYLVMVEMQKLGVKPDVITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQR  284 (409)
Q Consensus       205 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  284 (409)
                      ....+-.+-     .+...++..++...+.|+-++-.++++.+.+.+ ++++...-.+..+|.+.|...++.+++.+.-+
T Consensus        75 vv~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe  148 (161)
T d1wy6a1          75 VVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK  148 (161)
T ss_dssp             HHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            333333221     244556666777777788888788877766644 66777777777788888888888888888877


Q ss_pred             cCCC
Q 015329          285 FGIE  288 (409)
Q Consensus       285 ~~~~  288 (409)
                      .|++
T Consensus       149 ~G~K  152 (161)
T d1wy6a1         149 KGEK  152 (161)
T ss_dssp             TTCH
T ss_pred             HhHH
Confidence            7764

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.69  E-value=0.042  Score=37.12  Aligned_cols=140  Identities=12%  Similarity=0.094  Sum_probs=90.2

Q ss_pred             HHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 015329          231 FYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMA  310 (409)
Q Consensus       231 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a  310 (409)
                      +.-.|..+++.+++.+.....   +..-||-+|.-....-+-+....+++.+-+.   .|.          ..++++...
T Consensus        12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~v   75 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV   75 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred             HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHH
Confidence            344678888888888877753   5666777777666667777666666665432   111          123334333


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329          311 KKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRR  390 (409)
Q Consensus       311 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  390 (409)
                      ...+-.+-     .+...++..++.+..+|.-++-.++++++.+.+ ++++...-.+..+|.+.|...++.+++.++-++
T Consensus        76 v~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~  149 (161)
T d1wy6a1          76 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK  149 (161)
T ss_dssp             HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            33332221     144456666777777888888788877766654 777777888888888888888888888877766


Q ss_pred             CC
Q 015329          391 VP  392 (409)
Q Consensus       391 ~~  392 (409)
                      +.
T Consensus       150 G~  151 (161)
T d1wy6a1         150 GE  151 (161)
T ss_dssp             TC
T ss_pred             hH
Confidence            64

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.012  Score=38.42  Aligned_cols=60  Identities=12%  Similarity=0.061  Sum_probs=31.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 015329          296 LVIKGFCRSGHLDMAKKVYSAMLGR-----RLMPN-RKIYQTMIHYLCQEGDFNLAYIMCKDSMKK  355 (409)
Q Consensus       296 ~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  355 (409)
                      .+...+.+.|++++|...|++..+.     ...++ ..+++.+..++.+.|++++|...++++++.
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            4445555555555555555554432     01111 344555666666666666666666665554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.20  E-value=0.1  Score=36.21  Aligned_cols=15  Identities=33%  Similarity=0.377  Sum_probs=6.8

Q ss_pred             CHHHHHHHHHHHHhC
Q 015329          306 HLDMAKKVYSAMLGR  320 (409)
Q Consensus       306 ~~~~a~~~~~~m~~~  320 (409)
                      +.++|.++|+...+.
T Consensus        74 d~~~A~~~~~~aa~~   88 (133)
T d1klxa_          74 DLRKAAQYYSKACGL   88 (133)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHhhhhcc
Confidence            344444444444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.19  E-value=0.1  Score=36.19  Aligned_cols=112  Identities=8%  Similarity=-0.154  Sum_probs=75.5

Q ss_pred             CHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHhHHH
Q 015329          271 RSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQ----EGDFNLAY  346 (409)
Q Consensus       271 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~  346 (409)
                      |+++|...|++..+.|.. .  ....|.  .....+.++|.+++++..+.|   +......|...|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            566677777776666532 1  111221  223457788888888887765   45555556666654    45689999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhcCCC
Q 015329          347 IMCKDSMKKNWVPSVDTISALLEGLKK----NNQPCKANTIMALVQRRVPH  393 (409)
Q Consensus       347 ~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~  393 (409)
                      ++|++..+.|   ++.....|-..|..    ..+.++|.+++++..+.+.+
T Consensus        80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_          80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence            9999998876   45566666666665    46899999999998877643

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.40  E-value=0.1  Score=35.37  Aligned_cols=72  Identities=13%  Similarity=-0.009  Sum_probs=49.8

Q ss_pred             CCCHHHHHHHHHHHHHcCC---HhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 015329          323 MPNRKIYQTMIHYLCQEGD---FNLAYIMCKDSMKKNWVPSV-DTISALLEGLKKNNQPCKANTIMALVQRRVPHFS  395 (409)
Q Consensus       323 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  395 (409)
                      .|+..+--....+++++.+   .++++.++++..+.+ +.+. ..+..|..+|.+.|++++|.+.++.+.+..|.+.
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            4556665556666666544   557788888877643 3333 5666777888888888888888888888887764

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.95  E-value=0.41  Score=30.43  Aligned_cols=47  Identities=19%  Similarity=0.176  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 015329          344 LAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQRR  390 (409)
Q Consensus       344 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  390 (409)
                      ++.+-++.+...++.|++....+.+++|.+.+++..|.++|+-++.+
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K   70 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   70 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34444444444455555555555555555555555555555555433

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.75  E-value=0.61  Score=31.45  Aligned_cols=71  Identities=11%  Similarity=-0.045  Sum_probs=48.9

Q ss_pred             CccchHHHHHHHHhcCC---CchhHHHHHHHhhhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCH
Q 015329           78 ENKYAFEDTVSRLAGAR---RFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGKAGMIKHAMDTFYDMHLYGCKRTV  150 (409)
Q Consensus        78 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~  150 (409)
                      ++..+--...-+++++.   ++++++.+++.+.+..+......+-.|.-+|.+.|++++|.+.++.+++.  .|+.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n  106 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN  106 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTC
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCc
Confidence            44444444556666554   45688999998886543323455556888899999999999999999876  4543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=90.86  E-value=4.1  Score=34.46  Aligned_cols=311  Identities=9%  Similarity=-0.043  Sum_probs=165.8

Q ss_pred             HhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHh--cCCCchhHHHHHHHhhhCCCCCC-hhHHHHHHHHHHhc
Q 015329           52 VKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLA--GARRFDYIEHLLEHQKSLPQGRR-EGFIMRIMMLYGKA  128 (409)
Q Consensus        52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  128 (409)
                      ..+.+.++...+..+...+...    | ...|-..-..-.  .....+++..+++   +.+..|- .......+..+.+.
T Consensus        14 ~~a~~~~~~~~~~~~~~~L~dy----p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~---~~p~~P~~~~lr~~~l~~L~~~   85 (450)
T d1qsaa1          14 KQAWDNRQMDVVEQMMPGLKDY----P-LYPYLEYRQITDDLMNQPAVTVTNFVR---ANPTLPPARTLQSRFVNELARR   85 (450)
T ss_dssp             HHHHHTTCHHHHHHHSGGGTTS----T-THHHHHHHHHHHTGGGCCHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHhhhcCC----C-CHHHHHHHHHHhccccCCHHHHHHHHH---HCCCChhHHHHHHHHHHHHHhc
Confidence            3456778888888888887432    2 222333322222  2334444444443   3333222 23333456677888


Q ss_pred             CChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHHHHHHHHHhcCChhHHH--
Q 015329          129 GMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFNIVIKAFCEMGILDKAY--  206 (409)
Q Consensus       129 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~--  206 (409)
                      ++++..++.+.     ..+.+...-.....+....|+.+.+......+-......|+  .+..+...+.+.|.+....  
T Consensus        86 ~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~--~c~~l~~~~~~~~~lt~~~~~  158 (450)
T d1qsaa1          86 EDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLFSVWRASGKQDPLAYL  158 (450)
T ss_dssp             TCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHHHHHHHTTCSCHHHHH
T ss_pred             cCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch--HHHHHHHHHHhcCCCCHHHHH
Confidence            88877555442     12445555567778888888887777766554333333343  4556666666665543222  


Q ss_pred             HHHHHHHhCCC-----------CCCH-HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHh--cCCH
Q 015329          207 LVMVEMQKLGV-----------KPDV-ITYTTLISAFYKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQHLVN--KRRS  272 (409)
Q Consensus       207 ~~~~~m~~~g~-----------~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~  272 (409)
                      +-+..+...|-           .++. ......+...   .+...+....   ..  ...+......+..++.+  ..+.
T Consensus       159 ~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~---~~p~~~~~~~---~~--~~~~~~~~~~~~~~l~rla~~d~  230 (450)
T d1qsaa1         159 ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFA---RT--TGATDFTRQMAAVAFASVARQDA  230 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHH---HH--SCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHH---hChHhHHHHH---hc--CCCChhhhHHHHHHHHHHhccCh
Confidence            22333322221           1111 1111111111   1111111111   11  12233333333333333  3578


Q ss_pred             hHHHHHHHHHHHcCCCcCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 015329          273 WQANKLMGLMQRFGIEPDEVTYNLVIK----GFCRSGHLDMAKKVYSAMLGRRLMPNRKIYQTMIHYLCQEGDFNLAYIM  348 (409)
Q Consensus       273 ~~a~~~~~~~~~~~~~p~~~~~~~li~----~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  348 (409)
                      +.+..++......... +..-+..+-.    .....+..+.+...+......+  .+.......+......+++..+...
T Consensus       231 ~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~  307 (450)
T d1qsaa1         231 ENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTW  307 (450)
T ss_dssp             HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHH
Confidence            8888888887654322 2222222222    2234566788888887776653  3555555566666778999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 015329          349 CKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQR  389 (409)
Q Consensus       349 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  389 (409)
                      +..|-... .....-..-+.+++...|+.+.|..++..+..
T Consensus       308 ~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         308 LARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            98875432 22344444556889999999999999998764

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.47  E-value=1.3  Score=28.11  Aligned_cols=47  Identities=17%  Similarity=0.087  Sum_probs=24.1

Q ss_pred             ChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhc
Q 015329          130 MIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEV  176 (409)
Q Consensus       130 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  176 (409)
                      +.-+..+-++.+...++.|++.+..+.+++|-+.+++..|.++++.+
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~v   67 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV   67 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33344444455545555555555555555555555555555555433

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=87.16  E-value=7.6  Score=32.68  Aligned_cols=313  Identities=9%  Similarity=-0.043  Sum_probs=163.6

Q ss_pred             HHHHhhhhcCChHHHHHHHHHhhcCCCCCCccchHHHHHHHHhcCCCchhHHHHHHHhhhCCCCCChhHHHHHHHHHHh-
Q 015329           49 PALVKLKAERDPEKLFQLFKANAHNRIVIENKYAFEDTVSRLAGARRFDYIEHLLEHQKSLPQGRREGFIMRIMMLYGK-  127 (409)
Q Consensus        49 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  127 (409)
                      ..+..+.+.++++..+..+.    ..  +.+...-.....+....|+.++|...+..+-..+.. .+.....+...+.+ 
T Consensus        77 ~~l~~L~~~~~w~~~~~~~~----~~--p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~  149 (450)
T d1qsaa1          77 RFVNELARREDWRGLLAFSP----EK--PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRAS  149 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHCC----SC--CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHT
T ss_pred             HHHHHHHhccCHHHHHHhcc----CC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhc
Confidence            34556777777766444331    12  234444455667777788887777777665544322 22222333333333 


Q ss_pred             -----------------cCChHHHHHHHHHhhhcCCCCCHHhHHHHHHHHHccCCHHHHHHHHHhcCccCCCCcCHHHHH
Q 015329          128 -----------------AGMIKHAMDTFYDMHLYGCKRTVKSLNAALKVLTESRDLKAIQAFLMEVPEKFHIQFDIFSFN  190 (409)
Q Consensus       128 -----------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  190 (409)
                                       .|++..|..+...+.    ..........+.....   ...+.......      ..+.....
T Consensus       150 ~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~----~~~~~~~~a~~~l~~~---p~~~~~~~~~~------~~~~~~~~  216 (450)
T d1qsaa1         150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMP----ADYQTIASAIISLANN---PNTVLTFARTT------GATDFTRQ  216 (450)
T ss_dssp             TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC----GGGHHHHHHHHHHHHC---GGGHHHHHHHS------CCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCChhhHHHHHhhCC----hhHHHHHHHHHHHHhC---hHhHHHHHhcC------CCChhhhH
Confidence                             333333333333221    0111122222322222   12222222111      11222222


Q ss_pred             HHHHHHHh--cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHcCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 015329          191 IVIKAFCE--MGILDKAYLVMVEMQKLGVKPDVITYTTLISAF----YKDNRPEIGNGLWNLMVCKGCFPNLATFNVRIQ  264 (409)
Q Consensus       191 ~ll~~~~~--~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  264 (409)
                      .+..++.+  ..+.+.+..++......... +..-+..+-...    ...+..+.+...+......+.  +.....-.+.
T Consensus       217 ~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~  293 (450)
T d1qsaa1         217 MAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVR  293 (450)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHH
T ss_pred             HHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHH
Confidence            22222222  24677777777776653322 222222222222    234556667777766665542  3333444555


Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------CCCC--------
Q 015329          265 HLVNKRRSWQANKLMGLMQRFGIEPDEVTYNLVIKGFCRSGHLDMAKKVYSAMLGR------------RLMP--------  324 (409)
Q Consensus       265 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------~~~p--------  324 (409)
                      .....+++..+...+..|...... ...-.--+..++...|+.++|..+|......            |..+        
T Consensus       294 ~al~~~~~~~~~~~~~~l~~~~~~-~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~  372 (450)
T d1qsaa1         294 MALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAP  372 (450)
T ss_dssp             HHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred             HHHHcCChHHHHHHHHhcCccccc-HHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCC
Confidence            566678888888888776432211 2333345667788888888888888876532            1100        


Q ss_pred             ---CHH-H---HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015329          325 ---NRK-I---YQTMIHYLCQEGDFNLAYIMCKDSMKKNWVPSVDTISALLEGLKKNNQPCKANTIMALVQ  388 (409)
Q Consensus       325 ---~~~-~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  388 (409)
                         ... .   -..-+..+...|+...|...|..+.+.   .+......+.....+.|.++.|+.......
T Consensus       373 ~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         373 QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             ccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence               000 0   012245667789999999888887753   356677777888889999999988776653