Citrus Sinensis ID: 015349

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MGDAESALPPSKKRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRNQTASTPSSNPFAGIRLVPSTEPSATVTPATTEPTKTVSPAATELLESSENKVSVDANNDAGKEAEKGDGEDNKQSESKIDEPVAVEAASSEPEKGEDESSKQTESKNEPASADAAGKKSSDDKENGAEKSEVDNGKTAGVDKPENEDEKETSHETTDSSQLSSFGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDGSASNSTSASVFGQEVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTTAVLKTPENSPKATDD
cccccccccccccccccccccccccccccccccccccccccccccHHHHccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccEEEEEEEEEEEEEccccEEEEEEEEEEEEEEccccccEEEEEEEccccEEEEccccccccEEcccccccEEEEEEccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHccccccccccccc
cccHHccccccHHHccccEccccccccccccccccHcccccccccHHHHcccEEEEEEccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHcEEEEEEccHHHHHccccEEEEEEEcccccEEEEEEEcccEEEEEEEEEEccccEcccccccEEEEEEEcccccccccHHEEEEEEccHHHHHHHHHHHHHHHHHHcccccccccccccccc
mgdaesalppskkraagrelsrdnpglddeedsselesgtfkkaTDEVLATRRIVKVrrnqtastpssnpfagirlvpstepsatvtpatteptktvspAATELLEssenkvsvdanndagkeaekgdgednkqseskidepvaveaassepekgedesskqtesknepasadaagkkssddkengaeksevdngktagvdkpenedeketshettdssqlssfgqlssTQNAftglagtgfststfafgsipkdgsasnstsasvFGQEVVVETGEENEKVVFSADSVLFEFLdgswkergkgelkvNVSTNATGRARLLMRARGNYRLILNaslypdmkltnmdkkgITFACinsategksglSTFALKFRDASIVEEFQTAVAAHkdkttavlktpenspkatdd
mgdaesalppskkraagrelsrdnpglddeedsselesgtfkkatdevlatrrivkvrrnqtastpssnpfagirlVPSTEPSatvtpatteptktvSPAATellessenkvsvdanndagkeaekgdgednkqseskidepvaveaassepekgedesskqtesknepasadaagkkssddkengaeksevdngktagvdkpenedeketshettdssqlssfGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDGSASNSTSASVFGQEVVVETGEENEKVVFSADSVLFEFLDgswkergkgelkvnvstnatgraRLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAvaahkdkttavlktpenspkatdd
MGDAESALPPSKKRAAGRELSRDNPGlddeedsselesGTFKKATDEVLATRRIVKVRRNQTASTPSSNPFAGIRLvpstepsatvtpatteptKTVSPAATELLESSENKVSVDANNDAGKEAEKGDGEDNKQSESKIDEPVAVEAASSEPEKGEDESSKQTESKNEPasadaagkkssddkENGAEKSEVDNGKTAGVDKPENEDEKETSHETTDssqlssfgqlssTQNAFTGLAGTGFSTSTFAFGSIPKDGSASNSTSASVFGQEVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTTAVLKTPENSPKATDD
******************************************************************************************************************************************************************************************************************************************TGLAGTGFSTSTFAF*****************FGQEVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAA*********************
***********************************************************************************************************************************************************************************************************************************************************************************GEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAV***********************
***************************************TFKKATDEVLATRRIVKVR*********SNPFAGIRLVPSTEPSATVTPATTEPTKTVSPAATELLESSENKVSVDANNDAGK*************************************************************************KTAG***************************LSSTQNAFTGLAGTGFSTSTFAFGSIPK***********VFGQEVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTTAV*************
************************************************LATRRIVKVRRNQ******SNPFAGI***PST************************************************************************************************************************************************************************************STSASVFGQEVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTT***************
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MGDAESALPPSKKRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRNQTASTPSSNPFAGIRLVPSTEPSATVTPATTEPTKTVSPAATELLESSENKVSVDANNDAGKEAEKGDGEDNKQSESKIDEPVAVEAASSEPEKGEDESSKQTESKNEPASADAAGKKSSDDKENGAEKSEVDNGKTAGVDKPENEDEKETSHETTDSSQLSSFGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDGSASNSTSASVFGQEVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTTAVLKTPENSPKATDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query408 2.2.26 [Sep-21-2011]
P48820 1085 E3 SUMO-protein ligase Ra yes no 0.316 0.118 0.315 5e-10
Q9H6Z4567 Ran-binding protein 3 OS= yes no 0.252 0.181 0.351 6e-10
Q9CT10491 Ran-binding protein 3 OS= yes no 0.252 0.209 0.351 7e-10
Q4R4T9499 Ran-binding protein 3 OS= N/A no 0.252 0.206 0.351 9e-10
Q7Z3J3 1758 RanBP2-like and GRIP doma no no 0.267 0.062 0.324 1e-09
Q86VV4465 Ran-binding protein 3-lik no no 0.257 0.225 0.352 2e-09
Q5R4Y2494 Ran-binding protein 3 OS= no no 0.242 0.200 0.355 2e-09
P49792 3224 E3 SUMO-protein ligase Ra no no 0.267 0.033 0.316 4e-09
P0DJD0 1748 RANBP2-like and GRIP doma no no 0.267 0.062 0.316 5e-09
Q09146399 Brefeldin A resistance pr yes no 0.296 0.303 0.333 6e-09
>sp|P48820|RBP2_BOVIN E3 SUMO-protein ligase RanBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2 Back     alignment and function desciption
 Score = 66.2 bits (160), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 17/146 (11%)

Query: 271 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 328
           V V +GEENE+VVFS  + L+ +    G WKERG G++K+ +      + R++MR     
Sbjct: 185 VEVSSGEENEQVVFSHRAKLYRYDKDAGQWKERGIGDIKI-LQNYENKQVRIVMRRDQVL 243

Query: 329 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEF---- 381
           +L  N  + PDM L NM   ++  +  AC     +G+  +   A++F+   + + F    
Sbjct: 244 KLCANHRITPDMTLQNMKGTERVWVWTAC--DFADGERKIEHLAVRFKLQDVADSFKKIF 301

Query: 382 -QTAVAAHKDKTTAVLKTPENSPKAT 406
            +  VA  KD     L TP  +  AT
Sbjct: 302 DEAKVAQEKD----FLITPHVARSAT 323
E3 SUMO-protein ligase which facilitates SUMO1 and SUMO2 conjugation by UBE2I. Involved in transport factor (Ran-GTP, karyopherin)-mediated protein import via the F-G repeat-containing domain which acts as a docking site for substrates. Could also have isomerase or chaperone activity and may bind RNA or DNA. Component of the nuclear export pathway. Specific docking site for the nuclear export factor exportin-1.
Bos taurus (taxid: 9913)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|Q9H6Z4|RANB3_HUMAN Ran-binding protein 3 OS=Homo sapiens GN=RANBP3 PE=1 SV=1 Back     alignment and function description
>sp|Q9CT10|RANB3_MOUSE Ran-binding protein 3 OS=Mus musculus GN=Ranbp3 PE=1 SV=2 Back     alignment and function description
>sp|Q4R4T9|RANB3_MACFA Ran-binding protein 3 OS=Macaca fascicularis GN=RANBP3 PE=2 SV=1 Back     alignment and function description
>sp|Q7Z3J3|RGPD4_HUMAN RanBP2-like and GRIP domain-containing protein 4 OS=Homo sapiens GN=RGPD4 PE=2 SV=3 Back     alignment and function description
>sp|Q86VV4|RNB3L_HUMAN Ran-binding protein 3-like OS=Homo sapiens GN=RANBP3L PE=2 SV=2 Back     alignment and function description
>sp|Q5R4Y2|RANB3_PONAB Ran-binding protein 3 OS=Pongo abelii GN=RANBP3 PE=2 SV=1 Back     alignment and function description
>sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2 Back     alignment and function description
>sp|P0DJD0|RGPD1_HUMAN RANBP2-like and GRIP domain-containing protein 1 OS=Homo sapiens GN=RGPD1 PE=2 SV=1 Back     alignment and function description
>sp|Q09146|HBA1_SCHPO Brefeldin A resistance protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hba1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
224073815437 predicted protein [Populus trichocarpa] 0.936 0.874 0.571 1e-121
224058811469 predicted protein [Populus trichocarpa] 0.970 0.844 0.540 1e-120
255574554445 ran-binding protein, putative [Ricinus c 0.965 0.885 0.585 1e-119
118487390 517 unknown [Populus trichocarpa] 0.985 0.777 0.522 1e-112
449491723466 PREDICTED: uncharacterized protein LOC10 0.977 0.856 0.534 1e-111
356550557453 PREDICTED: uncharacterized protein LOC10 0.968 0.871 0.508 1e-105
356556006451 PREDICTED: brefeldin A resistance protei 0.965 0.873 0.518 1e-104
147789984449 hypothetical protein VITISV_004512 [Viti 0.958 0.870 0.534 1e-103
359482951417 PREDICTED: uncharacterized protein LOC10 0.889 0.870 0.534 1e-101
18403992440 nucleoporin 50 protein [Arabidopsis thal 0.958 0.888 0.487 2e-96
>gi|224073815|ref|XP_002304181.1| predicted protein [Populus trichocarpa] gi|222841613|gb|EEE79160.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 264/462 (57%), Positives = 310/462 (67%), Gaps = 80/462 (17%)

Query: 1   MGDAESALPPSKKRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRN 60
           MGDAE+AL  SKKRAA  E+SRDNPGLDD+  S E E+GTFKKA+DEVLA R+IVKVRR+
Sbjct: 1   MGDAENALTSSKKRAASSEISRDNPGLDDD-GSVEQETGTFKKASDEVLARRKIVKVRRS 59

Query: 61  QTASTPSSNPFAGIRLVPSTEPSATVTPATTEPTKTVSPAATELLESSENKVSVDANNDA 120
           QT STPSSNPFAGIRLVP TEP A    AT E            + S+  +VS +  +D 
Sbjct: 60  QTTSTPSSNPFAGIRLVPPTEPIAAPAVATIE------------VVSARQQVSEEGQSDT 107

Query: 121 GKEAEKGDGEDNKQSESKIDEPVAVEAASSEPEKGEDESSKQTESK-NEPASADAAGKKS 179
            +E EKG GE ++ SES+ID+PVA            +E SK++E K +EP + +A  K+S
Sbjct: 108 CEEVEKGKGEKSELSESEIDKPVA------------EEKSKESEGKTDEPVAENAIEKES 155

Query: 180 SDDK-----ENGAEKSEVDNGK---------TAGVDKPENEDEKETSHE----TTDSSQL 221
           S+DK      N A +S+VDN K          AG D  EN+D+K+  +E    +T+ + L
Sbjct: 156 SEDKGINSAVNEATESKVDNEKPAEDETDKENAGGDA-ENQDKKDNGNEIVYPSTEGAPL 214

Query: 222 SSFGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDGSASNSTSASVFGQ------------ 269
           +SF QLSS+QNAFTGLAGTGFSTSTF FGS+PKDGS   S S S+FGQ            
Sbjct: 215 NSFQQLSSSQNAFTGLAGTGFSTSTFTFGSVPKDGSVLGSGSGSLFGQKNEQPSFGFGLS 274

Query: 270 -----------------------EVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGEL 306
                                  EV VETGEENE+VVFSADSVLFEFLDG WKERGKGEL
Sbjct: 275 NNGSSSLSSVVSKTEGSGFPSMQEVPVETGEENERVVFSADSVLFEFLDGGWKERGKGEL 334

Query: 307 KVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLS 366
           KVNVS     RARLLMRARG++RLILNASLYPDMKL NMDK+GITFAC+NS  EGK  LS
Sbjct: 335 KVNVSAAGAERARLLMRARGHFRLILNASLYPDMKLANMDKRGITFACMNSIGEGKDSLS 394

Query: 367 TFALKFRDASIVEEFQTAVAAHKDKTTAVLKTPENSPKATDD 408
           TFALKF+D SIVEEF  AV AHKDK  A +KTPENSPKA+ D
Sbjct: 395 TFALKFKDGSIVEEFCAAVTAHKDKAPAAMKTPENSPKASSD 436

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224058811|ref|XP_002299634.1| predicted protein [Populus trichocarpa] gi|222846892|gb|EEE84439.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255574554|ref|XP_002528188.1| ran-binding protein, putative [Ricinus communis] gi|223532400|gb|EEF34195.1| ran-binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|118487390|gb|ABK95523.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449491723|ref|XP_004158984.1| PREDICTED: uncharacterized protein LOC101224991 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356550557|ref|XP_003543652.1| PREDICTED: uncharacterized protein LOC100816316 [Glycine max] Back     alignment and taxonomy information
>gi|356556006|ref|XP_003546318.1| PREDICTED: brefeldin A resistance protein-like [Glycine max] Back     alignment and taxonomy information
>gi|147789984|emb|CAN59845.1| hypothetical protein VITISV_004512 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359482951|ref|XP_003632864.1| PREDICTED: uncharacterized protein LOC100265296 [Vitis vinifera] Back     alignment and taxonomy information
>gi|18403992|ref|NP_564606.1| nucleoporin 50 protein [Arabidopsis thaliana] gi|12323129|gb|AAG51549.1|AC037424_14 unknown protein; 23094-21772 [Arabidopsis thaliana] gi|14335002|gb|AAK59765.1| At1g52380/F19K6_4 [Arabidopsis thaliana] gi|16323322|gb|AAL15374.1| At1g52380/F19K6_4 [Arabidopsis thaliana] gi|332194676|gb|AEE32797.1| nucleoporin 50 protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
TAIR|locus:2018204440 AT1G52380 [Arabidopsis thalian 0.727 0.675 0.448 6.8e-56
TAIR|locus:2093372465 AT3G15970 [Arabidopsis thalian 0.735 0.645 0.397 5.8e-50
DICTYBASE|DDB_G0278271372 DDB_G0278271 "Ran-binding prot 0.659 0.723 0.243 1.5e-11
POMBASE|SPBC365.13c399 hba1 "Ran GTPase binding prote 0.644 0.659 0.262 6.9e-11
FB|FBgn0039302 2695 Nup358 "Nucleoporin 358kD" [Dr 0.330 0.050 0.333 2.1e-10
ZFIN|ZDB-GENE-040426-1132511 ranbp3 "RAN binding protein 3" 0.227 0.181 0.377 3.5e-10
POMBASE|SPBC1773.07c215 sbp1 "Ran GTPase binding prote 0.308 0.586 0.297 4.1e-10
ZFIN|ZDB-GENE-040426-1627525 zgc:66385 "zgc:66385" [Danio r 0.703 0.546 0.258 4.5e-10
SGD|S000002409201 YRB1 "Ran GTPase binding prote 0.276 0.562 0.305 8.3e-10
UNIPROTKB|G4N530247 MGG_05203 "Ran-specific GTPase 0.338 0.558 0.299 2.1e-09
TAIR|locus:2018204 AT1G52380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 151/337 (44%), Positives = 194/337 (57%)

Query:   101 ATELLESSE-NKVSVDANNDAGKEAEKG-DGEDNKQSESKIDEPVAVEAA---SSEPEKG 155
             A+++ E  E +   VD  +  G+E EK  D +DN   +S   +  A E A   S +    
Sbjct:   113 ASDIEEGDEVDSKKVDVKDAVGEETEKTKDKDDNHCGKSADVQVAATEVAQMVSCDTNVC 172

Query:   156 ED--ESSKQTESKNEPXXXXXXXXXXXXXXENGAEKSEV--DNGKTAGVDKPENEDEKET 211
              +  E + QT+   E                NG E+++   DNG  +   +  +     T
Sbjct:   173 NNAVEGTDQTDFPLEKDSGGDQAEKKEKEG-NGIEEADKNGDNGAFSSFQQHSSNKNAFT 231

Query:   212 SHETTDXXXXXXXXXXXXTQNAFTGLAGTGFSTSTFAFGSIPKDGSAS--NSTSASVF-- 267
                +T+            +Q+   G  GTG   S F FG +P   S+S   +T +S+   
Sbjct:   232 GLASTEASGSSFSFGLV-SQD---GSTGTG---SLFGFG-LPSSNSSSIFGATGSSIIKK 283

Query:   268 ----G----QEVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRAR 319
                 G    QEV  ETGEENEKV FSADS++FE+LDG WKERGKGELKVNVS+N  G+AR
Sbjct:   284 SEGSGFPPKQEVSTETGEENEKVAFSADSIMFEYLDGGWKERGKGELKVNVSSN-DGKAR 342

Query:   320 LLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVE 379
             L+MRA+GNYRLILNASLYP+MKL NMDKKGITFAC+NS +EGK GLSTFALKF+D +IVE
Sbjct:   343 LVMRAKGNYRLILNASLYPEMKLANMDKKGITFACVNSVSEGKEGLSTFALKFKDPTIVE 402

Query:   380 EFQTAVAAHKD---------KTTAVLKTPENSPKATD 407
             EF+ A+  HKD         K+   LKTPENSP ATD
Sbjct:   403 EFRVAIDKHKDSKPMEKAAEKSALPLKTPENSPTATD 439
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005643 "nuclear pore" evidence=IEA
GO:0046907 "intracellular transport" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2093372 AT3G15970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278271 DDB_G0278271 "Ran-binding protein 3" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPBC365.13c hba1 "Ran GTPase binding protein Hba1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
FB|FBgn0039302 Nup358 "Nucleoporin 358kD" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1132 ranbp3 "RAN binding protein 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
POMBASE|SPBC1773.07c sbp1 "Ran GTPase binding protein Sbp1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1627 zgc:66385 "zgc:66385" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
SGD|S000002409 YRB1 "Ran GTPase binding protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|G4N530 MGG_05203 "Ran-specific GTPase-activating protein 1" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.III.1000.1
hypothetical protein (434 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
cd13169112 cd13169, RanBD_NUP50_plant, Ran-binding protein 2, 2e-56
cd00835111 cd00835, RanBD_family, Ran-binding domain 4e-25
smart00160130 smart00160, RanBD, Ran-binding domain 3e-21
cd13170109 cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding d 4e-16
cd13173110 cd13173, RanBD3_RanBP2_insect-like, Ran-binding pr 5e-15
pfam00638122 pfam00638, Ran_BP1, RanBP1 domain 8e-15
cd13176116 cd13176, RanBD1_RanBD3_RanBP2_mammal-like, Ran-bin 5e-14
pfam0891166 pfam08911, NUP50, NUP50 (Nucleoporin 50 kDa) 8e-13
cd13180113 cd13180, RanBD_RanBP3, Ran-binding protein 3 Ran-b 9e-13
cd13174113 cd13174, RanBD4_RanBP2_insect-like, Ran-binding pr 3e-12
cd13171112 cd13171, RanBD1_RanBP2_insect-like, Ran-binding pr 5e-12
cd13179126 cd13179, RanBD_RanBP1, Ran-binding domain 3e-11
cd13172113 cd13172, RanBD2_RanBP2_insect-like, Ran-binding pr 7e-11
cd13177117 cd13177, RanBD2_RanBP2_mammal-like, Ran-binding pr 3e-09
cd13181111 cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding dom 6e-07
cd13178117 cd13178, RanBD4_RanBP2_mammal-like, Ran-binding pr 2e-06
COG5171211 COG5171, YRB1, Ran GTPase-activating protein (Ran- 4e-05
>gnl|CDD|241323 cd13169, RanBD_NUP50_plant, Ran-binding protein 2, repeat 1 Back     alignment and domain information 
 Score =  180 bits (459), Expect = 2e-56
 Identities = 76/113 (67%), Positives = 94/113 (83%), Gaps = 3/113 (2%)

Query: 280 EKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPD 339
           EK VFS D  LFEF+ G WKERG+GEL+VN+ST  TG+ARL+MRA+GNYRL+LNA+L+PD
Sbjct: 1   EKAVFSGDGALFEFITGGWKERGRGELRVNLST--TGKARLVMRAKGNYRLLLNANLFPD 58

Query: 340 MKLTN-MDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDK 391
           MKLT  M  KG+TFAC+N+A   K+GLSTFALKF+D ++VEEF+ AV AHKD 
Sbjct: 59  MKLTKMMGGKGVTFACVNAAAGAKAGLSTFALKFKDPAVVEEFRAAVEAHKDA 111

RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP#importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The first RanBD2 is present in this hierarchy. Length = 112
>gnl|CDD|241232 cd00835, RanBD_family, Ran-binding domain Back     alignment and domain information
>gnl|CDD|197549 smart00160, RanBD, Ran-binding domain Back     alignment and domain information
>gnl|CDD|241324 cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding domain Back     alignment and domain information
>gnl|CDD|241327 cd13173, RanBD3_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 3 Back     alignment and domain information
>gnl|CDD|109686 pfam00638, Ran_BP1, RanBP1 domain Back     alignment and domain information
>gnl|CDD|241330 cd13176, RanBD1_RanBD3_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 1 and 3 Back     alignment and domain information
>gnl|CDD|220068 pfam08911, NUP50, NUP50 (Nucleoporin 50 kDa) Back     alignment and domain information
>gnl|CDD|241334 cd13180, RanBD_RanBP3, Ran-binding protein 3 Ran-binding domain Back     alignment and domain information
>gnl|CDD|241328 cd13174, RanBD4_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 4 Back     alignment and domain information
>gnl|CDD|241325 cd13171, RanBD1_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 1 Back     alignment and domain information
>gnl|CDD|241333 cd13179, RanBD_RanBP1, Ran-binding domain Back     alignment and domain information
>gnl|CDD|241326 cd13172, RanBD2_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 2 Back     alignment and domain information
>gnl|CDD|241331 cd13177, RanBD2_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 2 Back     alignment and domain information
>gnl|CDD|241335 cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding domain Back     alignment and domain information
>gnl|CDD|241332 cd13178, RanBD4_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 2 and 4 Back     alignment and domain information
>gnl|CDD|227499 COG5171, YRB1, Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 408
cd00835122 RanBD Ran-binding domain. Ran-binding domain; This 100.0
smart00160130 RanBD Ran-binding domain. Domain of apporximately 100.0
PF00638122 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is 100.0
COG5171211 YRB1 Ran GTPase-activating protein (Ran-binding pr 99.96
KOG2724487 consensus Nuclear pore complex component NPAP60L/N 99.78
KOG0864215 consensus Ran-binding protein RANBP1 and related R 99.64
PF0891172 NUP50: NUP50 (Nucleoporin 50 kDa); InterPro: IPR01 99.63
cd00837104 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog 99.22
KOG0866327 consensus Ran-binding protein RANBP3 [Intracellula 99.21
PF00568111 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1 98.74
cd01207111 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. 98.55
cd01206111 Homer Homer type EVH1 domain. Homer type EVH1 doma 98.28
smart00461106 WH1 WASP homology region 1. Region of the Wiskott- 97.62
cd01205105 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. 95.19
PF08553 794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 94.5
KOG4590 409 consensus Signal transduction protein Enabled, con 92.18
KOG3671 569 consensus Actin regulatory protein (Wiskott-Aldric 89.84
PF06058122 DCP1: Dcp1-like decapping family; InterPro: IPR010 84.54
>cd00835 RanBD Ran-binding domain Back     alignment and domain information 
Probab=100.00  E-value=5.2e-35  Score=251.99  Aligned_cols=117  Identities=43%  Similarity=0.708  Sum_probs=109.9

Q ss_pred             cccccCCccceeEEEEeeeEEeecC--CCceecceeEEEEEeecCCCCceEEEEEecCceeEEecccccccccccccC--
Q 015349          271 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMD--  346 (408)
Q Consensus       271 VeV~TGEEdEe~VFs~RaKLY~f~~--~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~~--  346 (408)
                      |+|.||||+|++||++|||||+|++  ++|++||+|+||||++++ ++++|||||+++++||||||+|+++|+++++.  
T Consensus         1 v~v~tGEE~E~~if~~r~KLy~~~~~~~~WkerG~G~lki~~~k~-~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~   79 (122)
T cd00835           1 VEVKTGEEDEEVIFSVRAKLYRFDDETKEWKERGVGELKILKHKD-TGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNS   79 (122)
T ss_pred             CCcccCCcCcEEEEEEEeEEEEEcCCCCCCeeceEEEEEEEEcCC-CCcEEEEEEeCCccEEEEeeEecCCcEEeecCCC
Confidence            6899999999999999999999987  899999999999999997 89999999999999999999999999999987  


Q ss_pred             CcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhh
Q 015349          347 KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHK  389 (408)
Q Consensus       347 ~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K  389 (408)
                      .++|+|+|++ .+|+++++++|+|||+++++|++|+.+|++++
T Consensus        80 ~k~~~~~~~d-~~~~~~~~~~~~lrfk~~~~a~~f~~~~~~~~  121 (122)
T cd00835          80 DKSIVWAAMD-FSDDEPKPETFAIRFKTEEIADEFKEAIEEAK  121 (122)
T ss_pred             CcEEEEEeee-cCCCCCcEEEEEEEECCHHHHHHHHHHHHHhh
Confidence            7999999985 45556789999999999999999999999987

Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
>smart00160 RanBD Ran-binding domain Back     alignment and domain information
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm Back     alignment and domain information
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08911 NUP50: NUP50 (Nucleoporin 50 kDa); InterPro: IPR015007 This entry represents a domain found in Nup2, 50 and 61, which are components of the nuclear pore complex Back     alignment and domain information
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain Back     alignment and domain information
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events Back     alignment and domain information
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain Back     alignment and domain information
>cd01206 Homer Homer type EVH1 domain Back     alignment and domain information
>smart00461 WH1 WASP homology region 1 Back     alignment and domain information
>cd01205 WASP WASP-type EVH1 domain Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
2crf_A150 Solution Structure Of The Ran_bp1 Domain Of Ran-Bin 3e-10
2y8f_A138 Structure Of The Ran-Binding Domain From Human Ranb 3e-09
3m1i_B191 Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex 2e-08
4gpt_B140 Crystal Structure Of Kpt251 In Complex With Crm1-ra 7e-08
4hat_B140 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 1e-07
1xke_A130 Solution Structure Of The Second Ran-Binding Domain 1e-07
4gmx_B141 Crystal Structure Of Kpt185 In Complex With Crm1-Ra 1e-07
2y8g_A138 Structure Of The Ran-Binding Domain From Human Ranb 2e-07
1rrp_B134 Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 4e-06
3n7c_A130 Crystal Structure Of The Ran Binding Domain From Th 1e-04
3oan_A130 Crystal Structure Of The Ran Binding Domain From Th 1e-04
1k5d_B201 Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Compl 1e-04
>pdb|2CRF|A Chain A, Solution Structure Of The Ran_bp1 Domain Of Ran-Binding Protein-3 Length = 150 Back     alignment and structure 
Iteration: 1

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 257 SASNSTSASVFGQEVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVN--VST 312
           S S+ T+     ++V V TGEE E  V      LF F     SW ERG+G L++N   ST
Sbjct: 3   SGSSGTARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMAST 62
Query: 313 N-ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEG 361
           +  T ++RL+MR +G+ RLILN  L+  M++    +K I    +++  +G
Sbjct: 63  DDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQG 112
>pdb|2Y8F|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3 (Wild Type) Length = 138 Back     alignment and structure
>pdb|3M1I|B Chain B, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 191 Back     alignment and structure
>pdb|4GPT|B Chain B, Crystal Structure Of Kpt251 In Complex With Crm1-ran-ranbp1 Length = 140 Back     alignment and structure
>pdb|4HAT|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1- Ran-ranbp1 Length = 140 Back     alignment and structure
>pdb|1XKE|A Chain A, Solution Structure Of The Second Ran-Binding Domain From Human Ranbp2 Length = 130 Back     alignment and structure
>pdb|4GMX|B Chain B, Crystal Structure Of Kpt185 In Complex With Crm1-Ran-Ranbp1 Length = 141 Back     alignment and structure
>pdb|2Y8G|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3 (E352a-R353v Double Mutant) Length = 138 Back     alignment and structure
>pdb|1RRP|B Chain B, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 134 Back     alignment and structure
>pdb|3N7C|A Chain A, Crystal Structure Of The Ran Binding Domain From The Nuclear Complex Component Nup2 From Ashbya Gossypii Length = 130 Back     alignment and structure
>pdb|3OAN|A Chain A, Crystal Structure Of The Ran Binding Domain From The Nuclear Complex Component Nup2 From Ashbya Gossypii Length = 130 Back     alignment and structure
>pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex Length = 201 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
3n7c_A130 ABR034WP; nuclear pore complex, NUP2, RAN-binding 1e-26
2y8g_A138 Ranbp3-B, RAN-binding protein 3; protein transport 1e-25
2ec1_A125 Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass 4e-24
1rrp_B134 Nuclear pore complex protein NUP358; complex (smal 4e-23
2crf_A150 RAN binding protein 3; RAN_BP1 domain, ranbp3, str 1e-22
1xke_A130 RAN-binding protein 2; beta barrel, pleckstrin-hom 4e-22
1k5d_B201 RAN-specific GTPase-activating protein; ranbp1, ra 1e-16
3m1i_B191 RAN-specific GTPase-activating protein 1; heat rep 2e-16
1evh_A112 WH1 domain, protein (MENA EVH1 domain); molecular 3e-05
2c1m_B46 Nucleoporin 50 kDa; protein transport/membrane pro 1e-04
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Length = 130 Back     alignment and structure
 Score =  102 bits (256), Expect = 1e-26
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 4/123 (3%)

Query: 271 VVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVNVSTNATGRARLLMRARGNY 328
           + +  GEENE+V+F   + L  F      +  RG GELK+    +  G+ R+L R+ G  
Sbjct: 1   MSLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGMG 60

Query: 329 RLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAH 388
            ++LN S+    K   +D            T+GK  L TF +K +  +       AVA  
Sbjct: 61  HVLLNTSVVKSFKYQPIDADNENLIKWPIITDGK--LETFIIKVKQKADGRRLVGAVADA 118

Query: 389 KDK 391
           +  
Sbjct: 119 QQA 121
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Length = 138 Back     alignment and structure
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 125 Back     alignment and structure
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Length = 134 Back     alignment and structure
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 150 Back     alignment and structure
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 130 Back     alignment and structure
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B* Length = 201 Back     alignment and structure
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Length = 191 Back     alignment and structure
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A Length = 112 Back     alignment and structure
>2c1m_B Nucleoporin 50 kDa; protein transport/membrane protein, nuclear transport/complex, importin-alpha, nucleoporin NUP50; 2.2A {Mus musculus} Length = 46 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
1xke_A130 RAN-binding protein 2; beta barrel, pleckstrin-hom 100.0
4hat_B140 RAN-specific GTPase-activating protein 1; heat rep 100.0
3m1i_B191 RAN-specific GTPase-activating protein 1; heat rep 100.0
1rrp_B134 Nuclear pore complex protein NUP358; complex (smal 100.0
1k5d_B201 RAN-specific GTPase-activating protein; ranbp1, ra 100.0
2ec1_A125 Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass 100.0
3n7c_A130 ABR034WP; nuclear pore complex, NUP2, RAN-binding 100.0
2y8g_A138 Ranbp3-B, RAN-binding protein 3; protein transport 100.0
2crf_A150 RAN binding protein 3; RAN_BP1 domain, ranbp3, str 100.0
2c1m_B46 Nucleoporin 50 kDa; protein transport/membrane pro 99.49
1qc6_A130 EVH1 domain from ENA/VAsp-like protein; AN incompl 99.47
1un0_C51 Nucleoporin NUP2; nuclear import, armadillo repeat 99.4
3tj3_C114 Nuclear pore complex protein NUP50; armadillo repe 99.35
1ddw_A120 GLGF-domain protein homer; pleckstrin homology dom 99.13
1i2h_A168 PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 99.02
1evh_A112 WH1 domain, protein (MENA EVH1 domain); molecular 98.86
1egx_A115 VAsp, vasodilator-stimulated phosphoprotein; EVH1, 98.85
1xod_A118 Spred1; sprouty, EVH1, peptide-binding, signaling 98.62
2jp2_A126 Spred-2, sprouty-related, EVH1 domain-containing p 98.57
3syx_A130 Sprouty-related, EVH1 domain-containing protein 1; 97.9
1mke_A152 WIP - N-WAsp, fusion protein consisting of wiskott 97.08
2ifs_A169 N-WAsp, wiskott-aldrich syndrome protien ineractin 97.02
2oqb_A117 Histone-arginine methyltransferase CARM1; protein 91.24
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
Probab=100.00  E-value=4.1e-37  Score=268.23  Aligned_cols=124  Identities=30%  Similarity=0.514  Sum_probs=115.0

Q ss_pred             cCCccceeEEEEeeeEEeecC--CCceecceeEEEEEeecCCCCceEEEEEecCceeEEeccccccccccccc--CCcce
Q 015349          275 TGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNM--DKKGI  350 (408)
Q Consensus       275 TGEEdEe~VFs~RaKLY~f~~--~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~~--~~ksV  350 (408)
                      ||||+|++||++|||||+|++  ++|+|||+|.||||+|+. ++++|||||+++++||||||+|+++|+++++  +.+.|
T Consensus         2 tGEE~E~~l~~~raKL~~~~~~~~~WkERG~G~lkil~~k~-~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~   80 (130)
T 1xke_A            2 SGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEV-NGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAW   80 (130)
T ss_dssp             CSSSCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETT-SSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSCE
T ss_pred             CCCcceEEEEEEEEEEEEEcCCCCCcccCcEEEEEEEEcCC-CCeEEEEEEEcCCCeEEEecEeCCCcEEeecCCCCeEE
Confidence            799999999999999999975  789999999999999997 8999999999999999999999999999986  46789


Q ss_pred             EEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhhcc-cccCCCC
Q 015349          351 TFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTT-AVLKTPE  400 (408)
Q Consensus       351 ~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~~~-~~l~tpe  400 (408)
                      +|++. +++|+++++++|+|||+++++|++|+++|+++|..+. .+|+||+
T Consensus        81 ~~~~~-d~~d~~~~~~~~~irfks~e~a~~f~~~~ee~k~~~~~~~~~~p~  130 (130)
T 1xke_A           81 MWLAS-DFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLLLDIPLQTPK  130 (130)
T ss_dssp             EEEEE-ECSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTTSCCCCCC
T ss_pred             EEEec-ccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence            99986 5667777899999999999999999999999998766 6999996
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B* Back     alignment and structure
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B* Back     alignment and structure
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Back     alignment and structure
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Back     alignment and structure
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>2c1m_B Nucleoporin 50 kDa; protein transport/membrane protein, nuclear transport/complex, importin-alpha, nucleoporin NUP50; 2.2A {Mus musculus} Back     alignment and structure
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4 Back     alignment and structure
>1un0_C Nucleoporin NUP2; nuclear import, armadillo repeat, NLS release, karyopherin recycling; 2.6A {Saccharomyces cerevisiae} PDB: 2c1t_C Back     alignment and structure
>3tj3_C Nuclear pore complex protein NUP50; armadillo repeat, nuclear import adaptor, NLS-bearing protei nucleo-cytoplasmic shuttling, protein transport; 2.70A {Homo sapiens} Back     alignment and structure
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A* Back     alignment and structure
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A Back     alignment and structure
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4 Back     alignment and structure
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A Back     alignment and structure
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens} Back     alignment and structure
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens} Back     alignment and structure
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 408
d2crfa1137 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (H 3e-26
d1rrpb_134 b.55.1.3 (B:) Nuclear pore complex protein Nup358 1e-25
d1k5db_146 b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human 5e-25
d1xkea1118 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (H 2e-20
d1evha_111 b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId 3e-09
d1egxa_115 b.55.1.4 (A:) Vasodilator-stimulated phosphoprotei 1e-08
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 137 Back     information, alignment and structure

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran binding protein 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 3e-26
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 11/131 (8%)

Query: 269 QEVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVNVSTN---ATGRARLLMR 323
           ++V V TGEE E  V      LF F     SW ERG+G L++N   +    T ++RL+MR
Sbjct: 8   EKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMR 67

Query: 324 ARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQT 383
            +G+ RLILN  L+  M++    +K I    +++  +   G+  F +        + +  
Sbjct: 68  TQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQ---GVKVFLISASSKDTGQLYAA 124

Query: 384 A---VAAHKDK 391
               + A + +
Sbjct: 125 LHHRILALRSR 135
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Length = 111 Back     information, alignment and structure
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Length = 115 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
d1k5db_146 Ran-binding protein 1, Ranbp1 {Human (Homo sapiens 100.0
d1rrpb_134 Nuclear pore complex protein Nup358 {Human (Homo s 100.0
d2crfa1137 Ran binding protein 3 {Human (Homo sapiens) [TaxId 99.97
d1xkea1118 Ran-binding protein 2 {Human (Homo sapiens) [TaxId 99.97
d1evha_111 Enabled {Mouse (Mus musculus) [TaxId: 10090]} 99.9
d1egxa_115 Vasodilator-stimulated phosphoprotein (VASP) {Huma 99.89
d1mkea1114 Actin regulatory protein WASP {Rat (Rattus norvegi 98.96
d1i2ha_145 Homer {Rat (Rattus norvegicus) [TaxId: 10116]} 98.36
d1xoda1114 Sprouty-related, EVH1 domain-containing protein 1, 98.07
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 1, Ranbp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-35  Score=257.62  Aligned_cols=125  Identities=25%  Similarity=0.410  Sum_probs=114.6

Q ss_pred             cccccccCCccceeEEEEeeeEEeecC----CCceecceeEEEEEeecCCCCceEEEEEecCceeEEecccccccccccc
Q 015349          269 QEVVVETGEENEKVVFSADSVLFEFLD----GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTN  344 (408)
Q Consensus       269 ~eVeV~TGEEdEe~VFs~RaKLY~f~~----~~WKERGvG~LKInk~k~dt~k~RIVMR~Dgt~KVlLN~~I~~~Mkv~~  344 (408)
                      ++|+++||||+|++||++|||||+|++    ++|++||+|+||||+++. ++++|||||+++++||||||+|+++|++++
T Consensus        13 ~~~ev~tgEE~E~~lf~~r~Kl~~f~~~~~~~~WkerGvG~lkilk~k~-t~~~RllmR~d~~~kv~lN~~i~~~m~~~~   91 (146)
T d1k5db_          13 PEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKE-KGAIRLLMRRDKTLKICANHYITPMMELKP   91 (146)
T ss_dssp             CCCCCCCSCSSCCCSEEEEEEEEEECCTTSSCCEEEEEEEEEEEEECSS-SCCEEEEEEETTTCCEEEEEECCSSCCCCB
T ss_pred             CCcccccCccCceEEEEEeeEEEEEcccCCCCCccceeEEEEEEEEcCC-CCeEEEEEEEcCCCcEEEEeEecCCceecc
Confidence            568999999999999999999999974    369999999999999997 999999999999999999999999999997


Q ss_pred             cC--CcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHhhhhccc
Q 015349          345 MD--KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTTA  394 (408)
Q Consensus       345 ~~--~ksV~ftavnd~sEge~k~~tylLRfKsaE~AdeF~~aIee~K~~~~~  394 (408)
                      ..  .+.|+|++..+++++.+++++|+|||+++++|++|+++|++++..+..
T Consensus        92 ~~~~~~~~~~~~~~d~~~~~~k~~~~~irfk~~e~a~~f~~~~~e~k~~~~~  143 (146)
T d1k5db_          92 NAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEE  143 (146)
T ss_dssp             CSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCceeEEEEecCCCccCCCceEEEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence            64  578889887777777889999999999999999999999999987653
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]} Back     information, alignment and structure