Citrus Sinensis ID: 015351

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MMGSKDADPSLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcc
ccccccccccccccccccccccccccccccccccccHEEcHHHHHHHHHHHHccccccccccEccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHc
mmgskdadpslgyltrkdtevklprptrvknktpapiqITAEQILREARERqeaeirppkqkitdsteLADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMhwmpdqqgwLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALdhipkgraeDLYRKFVAFEKqygdregiedAIVGKrrfqyedevrknpmnydiWFDYIRLEESVGNKERAREVYERAianvppaeeKRYWQRYIYLWINYALYeeldagdmeRTRDVYQ
mmgskdadpslgyltrkdtevklprptrvknktpapiqitaEQILREARerqeaeirppkqkitdsteladyrlrkrkefedlirrvrwntgvwikyakweesqkdfnrARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYErfvqchpkvsTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFaldhipkgraeDLYRKFVAFEkqygdregiedaivgkrrfqyedevrknpmnydiWFDYIRLEESVGNKERAREVYEraianvppaeekrYWQRYIYLWINYALYeeldagdmERTRDVYQ
MMGSKDADPSLGYLTRKDTEVKLPRPTRVKNKTPAPIQITaeqilrearerqeaeirPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ
***********************************************************************YRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELD************
************************************************************QKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ
*********SLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ
******************TEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ
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MMGSKDADPSLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGExxxxxxxxxxxxxxxxxxxxxEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query408 2.2.26 [Sep-21-2011]
Q9BZJ0 848 Crooked neck-like protein yes no 0.948 0.456 0.664 1e-147
P63155 690 Crooked neck-like protein yes no 0.948 0.560 0.662 1e-147
P63154 690 Crooked neck-like protein yes no 0.948 0.560 0.662 1e-147
P17886 702 Protein crooked neck OS=D yes no 0.948 0.551 0.628 1e-139
Q54XP4 705 Crooked neck-like protein yes no 0.933 0.540 0.604 1e-138
Q4WT84 676 Pre-mRNA-splicing factor yes no 0.818 0.494 0.568 1e-131
Q5K654 677 Pre-mRNA-splicing factor N/A no 0.828 0.499 0.579 1e-131
Q5BDX1 673 Pre-mRNA-splicing factor yes no 0.830 0.503 0.575 1e-130
P87312 674 Pre-mRNA-splicing factor yes no 0.813 0.492 0.556 1e-124
P0CO10 726 Pre-mRNA-splicing factor yes no 0.941 0.528 0.547 1e-123
>sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4 Back     alignment and function desciption
 Score =  522 bits (1344), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/388 (66%), Positives = 304/388 (78%), Gaps = 1/388 (0%)

Query: 22  KLPRPTRVKNKTPAPIQITAEQILREARERQ-EAEIRPPKQKITDSTELADYRLRKRKEF 80
           ++P+  +VKNK PA +QITAEQ+LREA+ER+ E    PP+QKITD  EL DY+LRKRK F
Sbjct: 172 RIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTF 231

Query: 81  EDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKF 140
           ED IR+ R     WIKYA+WEES K+  RARS++ERAL+VDYRN TLWLKYAE+EMKN+ 
Sbjct: 232 EDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQ 291

Query: 141 INHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQGWLSYIK 200
           +NHARN+WDRA+T LPRV+Q WYKY +MEEMLGNVAGARQ+FERWM W P++Q W SYI 
Sbjct: 292 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 351

Query: 201 FELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEE 260
           FELRY EV+RAR IYERFV  HP V  WIKYA+FE K      AR VYERAVE   D+  
Sbjct: 352 FELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHM 411

Query: 261 AEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDA 320
            E L+VAFA+FEE  KE ER R IYK+ALD I K  A++L++ +  FEK++GDR GIED 
Sbjct: 412 DEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDI 471

Query: 321 IVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQ 380
           IV KRRFQYE+EV+ NP NYD WFDY+RL ES    E  REVYERAIANVPP +EKR+W+
Sbjct: 472 IVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWK 531

Query: 381 RYIYLWINYALYEELDAGDMERTRDVYQ 408
           RYIYLWINYALYEEL+A D ERTR VYQ
Sbjct: 532 RYIYLWINYALYEELEAKDPERTRQVYQ 559
Involved in pre-mRNA splicing process.
Homo sapiens (taxid: 9606)
>sp|P63155|CRNL1_RAT Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2 SV=1 Back     alignment and function description
>sp|P63154|CRNL1_MOUSE Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=2 SV=1 Back     alignment and function description
>sp|P17886|CRN_DROME Protein crooked neck OS=Drosophila melanogaster GN=crn PE=2 SV=2 Back     alignment and function description
>sp|Q54XP4|CRNL1_DICDI Crooked neck-like protein 1 OS=Dictyostelium discoideum GN=crnkl1 PE=3 SV=1 Back     alignment and function description
>sp|Q4WT84|CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3 SV=1 Back     alignment and function description
>sp|Q5K654|CLF1_PARBR Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis GN=CLF1 PE=3 SV=1 Back     alignment and function description
>sp|Q5BDX1|CLF1_EMENI Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=clf1 PE=3 SV=2 Back     alignment and function description
>sp|P87312|CLF1_SCHPO Pre-mRNA-splicing factor cwf4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf4 PE=1 SV=1 Back     alignment and function description
>sp|P0CO10|CLF1_CRYNJ Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CLF1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
357481457 693 Pre-mRNA-splicing factor CLF1 [Medicago 0.916 0.539 0.928 0.0
224058393 687 predicted protein [Populus trichocarpa] 0.889 0.528 0.936 0.0
255537721 696 crooked neck protein, putative [Ricinus 0.887 0.520 0.924 0.0
356497297 695 PREDICTED: crooked neck-like protein 1-l 0.916 0.538 0.921 0.0
356539448 695 PREDICTED: crooked neck-like protein 1-l 0.916 0.538 0.921 0.0
449443386 703 PREDICTED: crooked neck-like protein 1-l 0.887 0.514 0.924 0.0
224072126 687 predicted protein [Populus trichocarpa] 0.889 0.528 0.921 0.0
449525555 703 PREDICTED: LOW QUALITY PROTEIN: crooked 0.887 0.514 0.921 0.0
225426022 703 PREDICTED: crooked neck-like protein 1 [ 0.887 0.514 0.911 0.0
357501061 695 Pre-mRNA-splicing factor CLF1 [Medicago 0.997 0.585 0.901 0.0
>gi|357481457|ref|XP_003611014.1| Pre-mRNA-splicing factor CLF1 [Medicago truncatula] gi|355512349|gb|AES93972.1| Pre-mRNA-splicing factor CLF1 [Medicago truncatula] Back     alignment and taxonomy information
 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/408 (92%), Positives = 391/408 (95%)

Query: 1   MMGSKDADPSLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPK 60
           M  SKDADP+LGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPK
Sbjct: 1   MSSSKDADPTLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPK 60

Query: 61  QKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEV 120
           QKITDSTEL +YRLRKRKEFEDLIRRVRWN  VWIKYA+WEESQKDF RARSVWERALEV
Sbjct: 61  QKITDSTELGEYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEESQKDFTRARSVWERALEV 120

Query: 121 DYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQ 180
           DY+NHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQ
Sbjct: 121 DYKNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQ 180

Query: 181 IFERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGE 240
           +FERWM WMPDQQGWLSYIKFELRYNE+ERAR I+ERFV CHP+V  WI+YAKFEMK GE
Sbjct: 181 VFERWMKWMPDQQGWLSYIKFELRYNEIERARGIFERFVLCHPRVGAWIRYAKFEMKNGE 240

Query: 241 VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDL 300
           V +ARNVYERAVEKLADDEEAE LFVAFAEFEERCKE ERARCIYKFALDHIPKGRAEDL
Sbjct: 241 VPKARNVYERAVEKLADDEEAELLFVAFAEFEERCKEAERARCIYKFALDHIPKGRAEDL 300

Query: 301 YRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAR 360
           YRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNP+NYD WFDYIRLEESVGNKER R
Sbjct: 301 YRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYIRLEESVGNKERTR 360

Query: 361 EVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
           EVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVY+
Sbjct: 361 EVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYK 408

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224058393|ref|XP_002299492.1| predicted protein [Populus trichocarpa] gi|222846750|gb|EEE84297.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255537721|ref|XP_002509927.1| crooked neck protein, putative [Ricinus communis] gi|223549826|gb|EEF51314.1| crooked neck protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356497297|ref|XP_003517497.1| PREDICTED: crooked neck-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356539448|ref|XP_003538210.1| PREDICTED: crooked neck-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449443386|ref|XP_004139458.1| PREDICTED: crooked neck-like protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224072126|ref|XP_002303629.1| predicted protein [Populus trichocarpa] gi|222841061|gb|EEE78608.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449525555|ref|XP_004169782.1| PREDICTED: LOW QUALITY PROTEIN: crooked neck-like protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225426022|ref|XP_002273571.1| PREDICTED: crooked neck-like protein 1 [Vitis vinifera] gi|147864786|emb|CAN81550.1| hypothetical protein VITISV_028250 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357501061|ref|XP_003620819.1| Pre-mRNA-splicing factor CLF1 [Medicago truncatula] gi|357501261|ref|XP_003620919.1| Pre-mRNA-splicing factor CLF1 [Medicago truncatula] gi|355495834|gb|AES77037.1| Pre-mRNA-splicing factor CLF1 [Medicago truncatula] gi|355495934|gb|AES77137.1| Pre-mRNA-splicing factor CLF1 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
TAIR|locus:2152965 705 AT5G41770 [Arabidopsis thalian 0.995 0.575 0.825 3e-188
TAIR|locus:2161363 673 AT5G45990 [Arabidopsis thalian 0.968 0.586 0.777 6.9e-173
TAIR|locus:2080853413 AT3G51110 [Arabidopsis thalian 0.938 0.927 0.725 4.4e-155
UNIPROTKB|J9P5Z1 728 CRNKL1 "Uncharacterized protei 0.948 0.531 0.636 4.1e-136
MGI|MGI:1914127 690 Crnkl1 "Crn, crooked neck-like 0.948 0.560 0.636 1.4e-135
RGD|620507 690 Crnkl1 "crooked neck pre-mRNA 0.948 0.560 0.636 1.4e-135
UNIPROTKB|Q5JY65 836 CRNKL1 "Crooked neck-like prot 0.948 0.462 0.639 1.8e-135
UNIPROTKB|Q9BZJ0 848 CRNKL1 "Crooked neck-like prot 0.948 0.456 0.639 1.8e-135
UNIPROTKB|F1MZT2 781 CRNKL1 "Uncharacterized protei 0.948 0.495 0.627 2e-134
FB|FBgn0000377 702 crn "crooked neck" [Drosophila 0.948 0.551 0.603 1.8e-133
TAIR|locus:2152965 AT5G41770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1825 (647.5 bits), Expect = 3.0e-188, P = 3.0e-188
 Identities = 335/406 (82%), Positives = 362/406 (89%)

Query:     3 GSKDADPSLGYLTRKDTEVKLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPPKQK 62
             G KD+D +LGY+TRKDTEVKLPRPTRVKNKTPAPIQIT                 PPKQK
Sbjct:     4 GGKDSDRTLGYMTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQK 63

Query:    63 ITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDY 122
             ITDSTEL+DYRLR+RKEFED IRR RWN  VW+KYA+WEESQKD+ RARSVWERA+E DY
Sbjct:    64 ITDSTELSDYRLRRRKEFEDQIRRARWNIQVWVKYAQWEESQKDYARARSVWERAIEGDY 123

Query:   123 RNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIF 182
             RNHTLWLKYAE EMKNKF+N ARNVWDRAVTLLPRVDQLWYKYIHMEE+LGN+AGARQIF
Sbjct:   124 RNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLLPRVDQLWYKYIHMEEILGNIAGARQIF 183

Query:   183 ERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVD 242
             ERWM W PDQQGWLS+IKFELRYNE+ERAR IYERFV CHPKVS +I+YAKFEMK GEV 
Sbjct:   184 ERWMDWSPDQQGWLSFIKFELRYNEIERARTIYERFVLCHPKVSAYIRYAKFEMKGGEVA 243

Query:   243 RARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYR 302
             R R+VYERA EKLADDEEAE LFVAFAEFEERCKE ERAR IYKFALDHIPKGRAEDLYR
Sbjct:   244 RCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFIYKFALDHIPKGRAEDLYR 303

Query:   303 KFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREV 362
             KFVAFEKQYGD+EGIEDAIVGKRRFQYEDEVRK+P NYD WFDY+RLEESVGNK+R RE+
Sbjct:   304 KFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKSPSNYDSWFDYVRLEESVGNKDRIREI 363

Query:   363 YERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
             YERAIANVPPAEEKRYWQRYIYLWINYAL+EE++  D+ERTRDVY+
Sbjct:   364 YERAIANVPPAEEKRYWQRYIYLWINYALFEEIETEDIERTRDVYR 409
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006396 "RNA processing" evidence=IEA;ISS
TAIR|locus:2161363 AT5G45990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080853 AT3G51110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|J9P5Z1 CRNKL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1914127 Crnkl1 "Crn, crooked neck-like 1 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620507 Crnkl1 "crooked neck pre-mRNA splicing factor-like 1 (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5JY65 CRNKL1 "Crooked neck-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BZJ0 CRNKL1 "Crooked neck-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MZT2 CRNKL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0000377 crn "crooked neck" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_I000327
hypothetical protein (687 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00440042
hypothetical protein (2357 aa)
   •• • 0.626
estExt_Genewise1_v1.C_LG_IV2251
hypothetical protein (909 aa)
   •• ••0.561
estExt_Genewise1_v1.C_LG_X3939
SubName- Full=Putative uncharacterized protein; (480 aa)
   •• • 0.527

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
pfam0218432 pfam02184, HAT, HAT (Half-A-TPR) repeat 4e-06
COG5191435 COG5191, COG5191, Uncharacterized conserved protei 1e-05
pfam05843271 pfam05843, Suf, Suppressor of forked protein (Suf) 3e-04
smart0038633 smart00386, HAT, HAT (Half-A-TPR) repeats 4e-04
pfam05843271 pfam05843, Suf, Suppressor of forked protein (Suf) 0.004
>gnl|CDD|111114 pfam02184, HAT, HAT (Half-A-TPR) repeat Back     alignment and domain information 
 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 19/29 (65%), Positives = 24/29 (82%)

Query: 207 EVERARQIYERFVQCHPKVSTWIKYAKFE 235
           E++RAR IYERFV  HP+V  WIK+A+FE
Sbjct: 2   EIDRARGIYERFVHVHPEVQNWIKWARFE 30

The HAT (Half A TPR) repeat is found in several RNA processing proteins. Length = 32
>gnl|CDD|227518 COG5191, COG5191, Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>gnl|CDD|218774 pfam05843, Suf, Suppressor of forked protein (Suf) Back     alignment and domain information
>gnl|CDD|214642 smart00386, HAT, HAT (Half-A-TPR) repeats Back     alignment and domain information
>gnl|CDD|218774 pfam05843, Suf, Suppressor of forked protein (Suf) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 408
KOG1915 677 consensus Cell cycle control protein (crooked neck 100.0
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 100.0
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 100.0
KOG1915 677 consensus Cell cycle control protein (crooked neck 100.0
KOG0495913 consensus HAT repeat protein [RNA processing and m 100.0
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 100.0
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 100.0
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 100.0
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 100.0
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 100.0
KOG0495913 consensus HAT repeat protein [RNA processing and m 100.0
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 100.0
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 100.0
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 99.98
KOG0547606 consensus Translocase of outer mitochondrial membr 99.96
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.96
PRK11788389 tetratricopeptide repeat protein; Provisional 99.96
PRK11788389 tetratricopeptide repeat protein; Provisional 99.95
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.95
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 99.95
KOG2076 895 consensus RNA polymerase III transcription factor 99.95
KOG1126638 consensus DNA-binding cell division cycle control 99.95
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 99.94
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 99.94
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.94
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.93
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.93
KOG1126638 consensus DNA-binding cell division cycle control 99.93
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.93
KOG2047 835 consensus mRNA splicing factor [RNA processing and 99.92
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 99.92
KOG0547606 consensus Translocase of outer mitochondrial membr 99.92
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.92
KOG2076 895 consensus RNA polymerase III transcription factor 99.92
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.91
KOG2047835 consensus mRNA splicing factor [RNA processing and 99.91
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.91
PRK14574 822 hmsH outer membrane protein; Provisional 99.9
PLN03218 1060 maturation of RBCL 1; Provisional 99.9
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.89
PRK12370553 invasion protein regulator; Provisional 99.89
PRK12370553 invasion protein regulator; Provisional 99.89
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.89
PRK11189296 lipoprotein NlpI; Provisional 99.89
PLN03218 1060 maturation of RBCL 1; Provisional 99.89
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.88
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.88
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 99.88
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.88
PRK14574 822 hmsH outer membrane protein; Provisional 99.87
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.86
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.86
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 99.85
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 99.85
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.85
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.85
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.85
PLN03077 857 Protein ECB2; Provisional 99.85
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.85
PRK11189296 lipoprotein NlpI; Provisional 99.84
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.84
KOG1129478 consensus TPR repeat-containing protein [General f 99.84
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 99.84
KOG1129478 consensus TPR repeat-containing protein [General f 99.84
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 99.83
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.83
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.83
KOG1125579 consensus TPR repeat-containing protein [General f 99.82
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 99.82
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 99.82
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 99.81
PLN03077857 Protein ECB2; Provisional 99.81
KOG1125579 consensus TPR repeat-containing protein [General f 99.81
PLN02789320 farnesyltranstransferase 99.8
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.79
PLN02789320 farnesyltranstransferase 99.78
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.76
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 99.74
KOG2003840 consensus TPR repeat-containing protein [General f 99.74
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.74
KOG2003 840 consensus TPR repeat-containing protein [General f 99.73
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 99.73
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.73
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 99.72
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 99.7
PRK15359144 type III secretion system chaperone protein SscB; 99.7
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 99.69
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.69
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.68
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.67
PRK14720 906 transcript cleavage factor/unknown domain fusion p 99.66
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 99.65
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 99.64
KOG2376 652 consensus Signal recognition particle, subunit Srp 99.64
KOG1258 577 consensus mRNA processing protein [RNA processing 99.63
PRK10370198 formate-dependent nitrite reductase complex subuni 99.63
PRK15359144 type III secretion system chaperone protein SscB; 99.6
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.59
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 99.58
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.57
KOG3060289 consensus Uncharacterized conserved protein [Funct 99.57
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 99.57
PRK10370198 formate-dependent nitrite reductase complex subuni 99.56
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 99.56
KOG1128777 consensus Uncharacterized conserved protein, conta 99.55
KOG3060289 consensus Uncharacterized conserved protein [Funct 99.55
TIGR02552135 LcrH_SycD type III secretion low calcium response 99.55
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 99.54
KOG1128 777 consensus Uncharacterized conserved protein, conta 99.52
KOG1258 577 consensus mRNA processing protein [RNA processing 99.52
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 99.5
KOG3785 557 consensus Uncharacterized conserved protein [Funct 99.49
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 99.49
PRK14720 906 transcript cleavage factor/unknown domain fusion p 99.48
TIGR02552135 LcrH_SycD type III secretion low calcium response 99.48
COG5107 660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 99.46
KOG2376 652 consensus Signal recognition particle, subunit Srp 99.46
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 99.44
COG4783484 Putative Zn-dependent protease, contains TPR repea 99.42
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 99.42
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 99.4
PRK04841 903 transcriptional regulator MalT; Provisional 99.39
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 99.39
COG4235287 Cytochrome c biogenesis factor [Posttranslational 99.34
KOG0553304 consensus TPR repeat-containing protein [General f 99.34
KOG0553304 consensus TPR repeat-containing protein [General f 99.33
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 99.32
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 99.31
KOG4340459 consensus Uncharacterized conserved protein [Funct 99.3
PRK04841 903 transcriptional regulator MalT; Provisional 99.3
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 99.29
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 99.27
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 99.24
COG4783484 Putative Zn-dependent protease, contains TPR repea 99.24
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 99.24
KOG3785 557 consensus Uncharacterized conserved protein [Funct 99.22
COG5107 660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 99.19
cd00189100 TPR Tetratricopeptide repeat domain; typically con 99.19
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 99.18
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 99.18
COG4235287 Cytochrome c biogenesis factor [Posttranslational 99.17
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 99.16
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 99.15
PRK02603172 photosystem I assembly protein Ycf3; Provisional 99.13
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 99.13
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 99.11
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 99.1
KOG4340 459 consensus Uncharacterized conserved protein [Funct 99.1
PRK10153517 DNA-binding transcriptional activator CadC; Provis 99.1
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 99.1
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 99.09
PRK11906458 transcriptional regulator; Provisional 99.08
COG3898 531 Uncharacterized membrane-bound protein [Function u 99.07
cd00189100 TPR Tetratricopeptide repeat domain; typically con 99.07
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 99.06
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 99.06
PRK15331165 chaperone protein SicA; Provisional 99.05
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 99.05
CHL00033168 ycf3 photosystem I assembly protein Ycf3 99.05
COG0457291 NrfG FOG: TPR repeat [General function prediction 99.04
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 99.04
PRK02603172 photosystem I assembly protein Ycf3; Provisional 99.04
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 99.03
PRK10153517 DNA-binding transcriptional activator CadC; Provis 99.03
CHL00033168 ycf3 photosystem I assembly protein Ycf3 99.01
PRK11906458 transcriptional regulator; Provisional 98.99
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.98
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 98.97
KOG0128 881 consensus RNA-binding protein SART3 (RRM superfami 98.97
COG0457291 NrfG FOG: TPR repeat [General function prediction 98.96
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 98.94
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 98.93
PRK10803263 tol-pal system protein YbgF; Provisional 98.93
PRK10803263 tol-pal system protein YbgF; Provisional 98.93
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 98.92
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.92
COG3898531 Uncharacterized membrane-bound protein [Function u 98.91
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 98.91
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 98.91
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 98.91
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 98.88
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 98.88
COG4700251 Uncharacterized protein conserved in bacteria cont 98.88
COG4105254 ComL DNA uptake lipoprotein [General function pred 98.86
PF12688120 TPR_5: Tetratrico peptide repeat 98.85
PF1337173 TPR_9: Tetratricopeptide repeat 98.83
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.83
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 98.8
PRK15331165 chaperone protein SicA; Provisional 98.8
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 98.79
KOG1941 518 consensus Acetylcholine receptor-associated protei 98.78
COG4700251 Uncharacterized protein conserved in bacteria cont 98.77
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 98.76
KOG0128 881 consensus RNA-binding protein SART3 (RRM superfami 98.75
PF12688120 TPR_5: Tetratrico peptide repeat 98.73
KOG1941 518 consensus Acetylcholine receptor-associated protei 98.71
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 98.7
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 98.69
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.64
KOG4234271 consensus TPR repeat-containing protein [General f 98.63
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 98.62
PF13512142 TPR_18: Tetratricopeptide repeat 98.61
PF1337173 TPR_9: Tetratricopeptide repeat 98.61
COG4105254 ComL DNA uptake lipoprotein [General function pred 98.6
COG1729262 Uncharacterized protein conserved in bacteria [Fun 98.57
COG1729262 Uncharacterized protein conserved in bacteria [Fun 98.52
PF1342844 TPR_14: Tetratricopeptide repeat 98.51
PF06552186 TOM20_plant: Plant specific mitochondrial import r 98.48
PF13512142 TPR_18: Tetratricopeptide repeat 98.48
PLN03098453 LPA1 LOW PSII ACCUMULATION1; Provisional 98.48
KOG1586288 consensus Protein required for fusion of vesicles 98.46
PF06552186 TOM20_plant: Plant specific mitochondrial import r 98.42
PLN03098453 LPA1 LOW PSII ACCUMULATION1; Provisional 98.4
PF1342844 TPR_14: Tetratricopeptide repeat 98.39
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 98.36
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 98.36
KOG4648 536 consensus Uncharacterized conserved protein, conta 98.32
KOG4555175 consensus TPR repeat-containing protein [Function 98.31
KOG4555175 consensus TPR repeat-containing protein [Function 98.31
KOG2796366 consensus Uncharacterized conserved protein [Funct 98.3
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 98.28
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 98.27
KOG2796366 consensus Uncharacterized conserved protein [Funct 98.25
KOG4234271 consensus TPR repeat-containing protein [General f 98.25
KOG1586288 consensus Protein required for fusion of vesicles 98.25
KOG2471 696 consensus TPR repeat-containing protein [General f 98.25
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 98.22
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 98.21
KOG2471696 consensus TPR repeat-containing protein [General f 98.21
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 98.18
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 98.17
PF1343134 TPR_17: Tetratricopeptide repeat 98.16
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 98.16
COG5191435 Uncharacterized conserved protein, contains HAT (H 98.13
KOG4648536 consensus Uncharacterized conserved protein, conta 98.13
PF1343134 TPR_17: Tetratricopeptide repeat 98.12
PF13281374 DUF4071: Domain of unknown function (DUF4071) 98.02
KOG3616 1636 consensus Selective LIM binding factor [Transcript 98.01
KOG2610491 consensus Uncharacterized conserved protein [Funct 98.0
PF13281374 DUF4071: Domain of unknown function (DUF4071) 97.97
KOG2300 629 consensus Uncharacterized conserved protein [Funct 97.95
KOG0530318 consensus Protein farnesyltransferase, alpha subun 97.94
COG5191435 Uncharacterized conserved protein, contains HAT (H 97.94
KOG1585308 consensus Protein required for fusion of vesicles 97.92
KOG4507 886 consensus Uncharacterized conserved protein, conta 97.91
KOG3616 1636 consensus Selective LIM binding factor [Transcript 97.91
COG3118304 Thioredoxin domain-containing protein [Posttransla 97.88
KOG2610491 consensus Uncharacterized conserved protein [Funct 97.85
KOG0530318 consensus Protein farnesyltransferase, alpha subun 97.83
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 97.8
PF03704146 BTAD: Bacterial transcriptional activator domain; 97.79
KOG0890 2382 consensus Protein kinase of the PI-3 kinase family 97.78
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 97.77
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 97.73
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 97.72
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 97.72
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 97.69
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 97.68
KOG0376 476 consensus Serine-threonine phosphatase 2A, catalyt 97.67
COG3118304 Thioredoxin domain-containing protein [Posttransla 97.67
COG2976207 Uncharacterized protein conserved in bacteria [Fun 97.67
PF03704146 BTAD: Bacterial transcriptional activator domain; 97.61
KOG1464 440 consensus COP9 signalosome, subunit CSN2 [Posttran 97.61
KOG0376 476 consensus Serine-threonine phosphatase 2A, catalyt 97.58
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 97.55
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 97.54
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 97.52
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 97.51
KOG2041 1189 consensus WD40 repeat protein [General function pr 97.46
COG2976207 Uncharacterized protein conserved in bacteria [Fun 97.45
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 97.44
KOG1585308 consensus Protein required for fusion of vesicles 97.41
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 97.35
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 97.27
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 97.25
KOG2300629 consensus Uncharacterized conserved protein [Funct 97.14
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 97.12
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 97.11
KOG3824472 consensus Huntingtin interacting protein HYPE [Gen 97.04
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 97.03
PF10345 608 Cohesin_load: Cohesin loading factor; InterPro: IP 97.03
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 97.0
PF10345 608 Cohesin_load: Cohesin loading factor; InterPro: IP 96.98
KOG2041 1189 consensus WD40 repeat protein [General function pr 96.97
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 96.93
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 96.93
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 96.9
KOG0890 2382 consensus Protein kinase of the PI-3 kinase family 96.89
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 96.88
KOG2422665 consensus Uncharacterized conserved protein [Funct 96.87
KOG2422665 consensus Uncharacterized conserved protein [Funct 96.86
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 96.79
KOG1550552 consensus Extracellular protein SEL-1 and related 96.78
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 96.78
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 96.75
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 96.75
smart00777125 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 96.72
smart0038633 HAT HAT (Half-A-TPR) repeats. Present in several R 96.7
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 96.64
KOG3824472 consensus Huntingtin interacting protein HYPE [Gen 96.54
KOG0551 390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 96.51
smart0038633 HAT HAT (Half-A-TPR) repeats. Present in several R 96.43
KOG0551390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 96.43
PRK10941269 hypothetical protein; Provisional 96.41
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 96.39
PF09986214 DUF2225: Uncharacterized protein conserved in bact 96.34
PF04781111 DUF627: Protein of unknown function (DUF627); Inte 96.21
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 96.19
COG4976287 Predicted methyltransferase (contains TPR repeat) 96.13
KOG4507886 consensus Uncharacterized conserved protein, conta 96.1
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 96.06
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 96.01
KOG2066 846 consensus Vacuolar assembly/sorting protein VPS41 95.97
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 95.97
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 95.97
KOG3807556 consensus Predicted membrane protein ST7 (tumor su 95.96
PF0218432 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 95.95
KOG1550552 consensus Extracellular protein SEL-1 and related 95.81
smart00777125 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 95.79
PF0218432 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 95.77
PF04781111 DUF627: Protein of unknown function (DUF627); Inte 95.62
PRK10941269 hypothetical protein; Provisional 95.44
COG1747 711 Uncharacterized N-terminal domain of the transcrip 95.43
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 95.41
COG4976287 Predicted methyltransferase (contains TPR repeat) 95.18
PF09986214 DUF2225: Uncharacterized protein conserved in bact 95.02
COG3629280 DnrI DNA-binding transcriptional activator of the 94.92
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 94.83
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 94.79
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 94.77
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 94.59
COG1747 711 Uncharacterized N-terminal domain of the transcrip 94.57
KOG3807556 consensus Predicted membrane protein ST7 (tumor su 94.51
KOG3364149 consensus Membrane protein involved in organellar 94.23
COG3629280 DnrI DNA-binding transcriptional activator of the 94.22
PF1304150 PPR_2: PPR repeat family 94.17
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 94.13
PRK15180 831 Vi polysaccharide biosynthesis protein TviD; Provi 93.79
COG0790292 FOG: TPR repeat, SEL1 subfamily [General function 93.73
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 93.64
KOG3364149 consensus Membrane protein involved in organellar 93.63
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 93.58
KOG1310758 consensus WD40 repeat protein [General function pr 93.57
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 93.49
COG3914 620 Spy Predicted O-linked N-acetylglucosamine transfe 93.15
PF1304150 PPR_2: PPR repeat family 93.14
PRK15180 831 Vi polysaccharide biosynthesis protein TviD; Provi 93.12
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 92.85
KOG1310758 consensus WD40 repeat protein [General function pr 92.84
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 92.59
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 92.56
smart00299140 CLH Clathrin heavy chain repeat homology. 92.28
PF0772036 TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 92.22
PF14929547 TAF1_subA: TAF RNA Polymerase I subunit A 92.15
KOG3783546 consensus Uncharacterized conserved protein [Funct 92.1
COG2912269 Uncharacterized conserved protein [Function unknow 92.05
COG4649221 Uncharacterized protein conserved in bacteria [Fun 91.86
PF04190260 DUF410: Protein of unknown function (DUF410) ; Int 91.65
PRK13184932 pknD serine/threonine-protein kinase; Reviewed 91.64
PF1286294 Apc5: Anaphase-promoting complex subunit 5 91.53
COG3947361 Response regulator containing CheY-like receiver a 91.38
KOG18391236 consensus Uncharacterized protein CLU1/cluA/TIF31 91.33
PF07079 549 DUF1347: Protein of unknown function (DUF1347); In 91.24
COG0790292 FOG: TPR repeat, SEL1 subfamily [General function 91.2
PF1285434 PPR_1: PPR repeat 91.13
KOG18391236 consensus Uncharacterized protein CLU1/cluA/TIF31 91.13
COG3947361 Response regulator containing CheY-like receiver a 90.89
PF1285434 PPR_1: PPR repeat 90.76
PF0772036 TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 90.64
PF1286294 Apc5: Anaphase-promoting complex subunit 5 90.44
PF1057980 Rapsyn_N: Rapsyn N-terminal myristoylation and lin 90.34
PF0772126 TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 90.29
COG4649221 Uncharacterized protein conserved in bacteria [Fun 90.11
KOG4521 1480 consensus Nuclear pore complex, Nup160 component [ 90.04
PF0772126 TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 89.92
KOG2581 493 consensus 26S proteasome regulatory complex, subun 89.84
KOG3783546 consensus Uncharacterized conserved protein [Funct 89.2
PF00244236 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 88.69
PF1051638 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat 88.68
COG2912269 Uncharacterized conserved protein [Function unknow 88.42
smart00299140 CLH Clathrin heavy chain repeat homology. 88.33
PF1051638 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat 88.31
TIGR0299642 rpt_mate_G_obs repeat-companion domain TIGR02996. 88.2
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 87.91
PF15015569 NYD-SP12_N: Spermatogenesis-associated, N-terminal 87.66
KOG0687393 consensus 26S proteasome regulatory complex, subun 87.64
TIGR0350444 FimV_Cterm FimV C-terminal domain. This protein is 87.63
COG4941415 Predicted RNA polymerase sigma factor containing a 87.28
COG4455273 ImpE Protein of avirulence locus involved in tempe 87.25
PRK11619 644 lytic murein transglycosylase; Provisional 86.79
TIGR0350444 FimV_Cterm FimV C-terminal domain. This protein is 86.49
PF10373278 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP 86.36
PF09797365 NatB_MDM20: N-acetyltransferase B complex (NatB) n 86.1
COG3914 620 Spy Predicted O-linked N-acetylglucosamine transfe 85.89
COG4941415 Predicted RNA polymerase sigma factor containing a 85.64
PF0153531 PPR: PPR repeat; InterPro: IPR002885 This entry re 85.47
KOG4814 872 consensus Uncharacterized conserved protein [Funct 84.85
PF12968144 DUF3856: Domain of Unknown Function (DUF3856); Int 84.48
PF11846193 DUF3366: Domain of unknown function (DUF3366); Int 84.28
PF0153531 PPR: PPR repeat; InterPro: IPR002885 This entry re 83.9
PF15015569 NYD-SP12_N: Spermatogenesis-associated, N-terminal 83.57
PF1057980 Rapsyn_N: Rapsyn N-terminal myristoylation and lin 83.31
PF12739414 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 83.02
KOG4279 1226 consensus Serine/threonine protein kinase [Signal 82.85
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 82.43
COG4455273 ImpE Protein of avirulence locus involved in tempe 82.26
PF10373278 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP 82.06
KOG2062 929 consensus 26S proteasome regulatory complex, subun 82.01
PF11846193 DUF3366: Domain of unknown function (DUF3366); Int 81.67
PF09670379 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 81.53
PF10255404 Paf67: RNA polymerase I-associated factor PAF67; I 81.19
PF15297353 CKAP2_C: Cytoskeleton-associated protein 2 C-termi 81.07
PF00244236 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 80.9
PF14929547 TAF1_subA: TAF RNA Polymerase I subunit A 80.56
TIGR0075635 PPR pentatricopeptide repeat domain (PPR motif). T 80.43
PF13226277 DUF4034: Domain of unknown function (DUF4034) 80.22
PF11817247 Foie-gras_1: Foie gras liver health family 1; Inte 80.16
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-51  Score=350.71  Aligned_cols=387  Identities=80%  Similarity=1.295  Sum_probs=377.3

Q ss_pred             cCCCccccccCCCCcccCCHHHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 015351           22 KLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWE  101 (408)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  101 (408)
                      ..|+...|+|++|+++||+++|+|++|.+++....+++.+.|.+.+++.+|..+-++.|+..|..+.-+...|..||.+.
T Consensus         4 ~~p~~~~vknktpa~vqItAEQlLRea~er~~~~~~ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwE   83 (677)
T KOG1915|consen    4 KLPKAAKVKNKTPAPVQITAEQLLREARERQLAAPRPPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWE   83 (677)
T ss_pred             CCcchhhccCCCCCcceecHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788899999999999999999999999999889999999999999999999999999999999999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHH
Q 015351          102 ESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQI  181 (408)
Q Consensus       102 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~  181 (408)
                      .+++++..|+.+|++||..+..+..+|+.|+.+.+++.++..|+.++.+|+.+-|....+|+.+..+....|+...|+++
T Consensus        84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi  163 (677)
T KOG1915|consen   84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI  163 (677)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHH
Q 015351          182 FERWMHWMPDQQGWLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEA  261 (408)
Q Consensus       182 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  261 (408)
                      |++-+...|+..+|..++.+..+.+.++.|+.+|++.+-..|+...|+.++.+..+.|+..-|+.+|++|++...++...
T Consensus       164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~  243 (677)
T KOG1915|consen  164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA  243 (677)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988778


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHH
Q 015351          262 EQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYD  341 (408)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~  341 (408)
                      ..++...|.+...++.+++|+.+|+-|+...|.+....++..+..++.+.|+...+++.++.+.+-.|++.+..+|.|.+
T Consensus       244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD  323 (677)
T KOG1915|consen  244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD  323 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence            88999999999999999999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351          342 IWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ  408 (408)
Q Consensus       342 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~  408 (408)
                      .|+.+..+....|+.+..+++|++|+...|...+...|+.||++|++|+.|+|+...|.+.++++|+
T Consensus       324 sWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq  390 (677)
T KOG1915|consen  324 SWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ  390 (677)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999984

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>KOG2422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information
>smart00386 HAT HAT (Half-A-TPR) repeats Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00386 HAT HAT (Half-A-TPR) repeats Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] Back     alignment and domain information
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing Back     alignment and domain information
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] Back     alignment and domain information
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] Back     alignment and domain information
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>PF13041 PPR_2: PPR repeat family Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13041 PPR_2: PPR repeat family Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] Back     alignment and domain information
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A Back     alignment and domain information
>KOG3783 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG2912 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function Back     alignment and domain information
>PRK13184 pknD serine/threonine-protein kinase; Reviewed Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] Back     alignment and domain information
>PF12854 PPR_1: PPR repeat Back     alignment and domain information
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] Back     alignment and domain information
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>PF12854 PPR_1: PPR repeat Back     alignment and domain information
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane Back     alignment and domain information
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3783 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] Back     alignment and domain information
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>COG2912 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996 Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal Back     alignment and domain information
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03504 FimV_Cterm FimV C-terminal domain Back     alignment and domain information
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] Back     alignment and domain information
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] Back     alignment and domain information
>PRK11619 lytic murein transglycosylase; Provisional Back     alignment and domain information
>TIGR03504 FimV_Cterm FimV C-terminal domain Back     alignment and domain information
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] Back     alignment and domain information
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB) Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] Back     alignment and domain information
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat Back     alignment and domain information
>KOG4814 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT Back     alignment and domain information
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised Back     alignment and domain information
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat Back     alignment and domain information
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal Back     alignment and domain information
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane Back     alignment and domain information
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] Back     alignment and domain information
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] Back     alignment and domain information
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised Back     alignment and domain information
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) Back     alignment and domain information
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] Back     alignment and domain information
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus Back     alignment and domain information
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] Back     alignment and domain information
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A Back     alignment and domain information
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) Back     alignment and domain information
>PF13226 DUF4034: Domain of unknown function (DUF4034) Back     alignment and domain information
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
2ooe_A530 Crystal Structure Of Hat Domain Of Murine Cstf-77 L 1e-04
2ond_A308 Crystal Structure Of The Hat-C Domain Of Murine Cst 3e-04
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77 Length = 530 Back     alignment and structure 
Iteration: 1

 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 111/264 (42%), Gaps = 34/264 (12%)
Query: 93  VWIKYAKWEESQK--------DFNRARSVWERALEVDYRNHTLWLKYAEV---------- 134
           +W KY +WE+S             R    +E+ L V   +  +W + A+           
Sbjct: 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 291
Query: 135 --EMKNK--FINHARNVWDRAV-TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHW- 188
             +M N   F + A N+++RA+ TLL +   L++ Y   EE          I+ R +   
Sbjct: 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 351
Query: 189 -MPDQQGWLSYIKFELRYNEVERARQIYERFVQ-CHPKVSTWIKYAKFEMKMG-EVDRAR 245
            +     ++ Y+KF  R   ++  R I+++  +    +   ++  A  E     +   A 
Sbjct: 352 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 411
Query: 246 NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFAL--DHIPKGRAEDLYRK 303
            ++E  ++K  D  E     +A+ ++     E    R +++  L    +P  ++ +++ +
Sbjct: 412 KIFELGLKKYGDIPE---YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 468
Query: 304 FVAFEKQYGDREGIEDAIVGKRRF 327
           F+AFE   GD   I    V KRRF
Sbjct: 469 FLAFESNIGDLASILK--VEKRRF 490
>pdb|2OND|A Chain A, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77 Length = 308 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
2ooe_A 530 Cleavage stimulation factor 77 kDa subunit; HAT do 2e-50
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 9e-26
2ooe_A 530 Cleavage stimulation factor 77 kDa subunit; HAT do 2e-17
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 1e-49
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 4e-25
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 1e-15
2ond_A 308 Cleavage stimulation factor 77 kDa subunit; HAT do 2e-12
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 1e-06
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 9e-37
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 8e-23
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 2e-18
2uy1_A 493 Cleavage stimulation factor 77; RNA-binding protei 5e-35
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 7e-27
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 2e-22
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 2e-20
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 1e-18
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 3e-18
2uy1_A 493 Cleavage stimulation factor 77; RNA-binding protei 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
4g1t_A472 Interferon-induced protein with tetratricopeptide 4e-07
4g1t_A472 Interferon-induced protein with tetratricopeptide 9e-05
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 1e-06
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 1e-04
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 5e-05
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 1e-04
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 4e-04
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 4e-04
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 7e-04
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure
 Score =  176 bits (448), Expect = 2e-50
 Identities = 55/354 (15%), Positives = 121/354 (34%), Gaps = 35/354 (9%)

Query: 80  FEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNK 139
            E  +    ++   W      E   +  ++AR  +ER +     +   W  Y E E+K K
Sbjct: 2   AEKKLEENPYDLDAWSILI-REAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAK 60

Query: 140 FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPDQQG----- 194
             +    ++ R +  +  +D       ++ E  G +   ++   +   +  D+ G     
Sbjct: 61  NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS 120

Query: 195 ---WLSYIKFELRYNE---------VERARQIYERFVQ--CHPKVSTWIKYAKFEMKMGE 240
              W+ YI F               +   R++Y+R            W  Y K+E  +  
Sbjct: 121 YQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180

Query: 241 VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDL 300
               + + +R+ + +     A++        +                 +   + +  D+
Sbjct: 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAP--------SVPPQNTPQEAQQVDM 232

Query: 301 YRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGN----- 355
           ++K++ +EK    R   +  I  +  F YE  +     + DIW++  +  E         
Sbjct: 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK 292

Query: 356 -KERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ 408
                 +++    AN+         ++ + L+  YA YEE      E+   +Y 
Sbjct: 293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR-MKYEKVHSIYN 345
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Length = 202 Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Length = 202 Back     alignment and structure
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 223 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 Back     alignment and structure
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Length = 152 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 100.0
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 100.0
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 100.0
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 100.0
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 100.0
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 100.0
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 100.0
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 100.0
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 100.0
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 100.0
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 100.0
2gw1_A514 Mitochondrial precursor proteins import receptor; 100.0
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 100.0
2gw1_A514 Mitochondrial precursor proteins import receptor; 100.0
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 100.0
4eqf_A365 PEX5-related protein; accessory protein, tetratric 100.0
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 100.0
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 100.0
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.98
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.97
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.97
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.97
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 99.97
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.97
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.97
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.97
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.96
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.96
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.96
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 99.96
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.96
3u4t_A272 TPR repeat-containing protein; structural genomics 99.96
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.95
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.95
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.95
3u4t_A272 TPR repeat-containing protein; structural genomics 99.94
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.94
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.94
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.94
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.94
2uy1_A 493 Cleavage stimulation factor 77; RNA-binding protei 99.94
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 99.94
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.93
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.93
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.93
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.93
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.93
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.93
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.92
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.92
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.92
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.92
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.92
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.92
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.92
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.91
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.91
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.91
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.91
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.91
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.91
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.9
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.89
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.88
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.88
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 99.88
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.88
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.87
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.87
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 99.87
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.87
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.86
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 99.85
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.85
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.85
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.85
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.84
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.84
1b89_A 449 Protein (clathrin heavy chain); triskelion, coated 99.84
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 99.84
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.84
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.83
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.83
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.83
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.83
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.82
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 99.82
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.82
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.82
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.82
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.81
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.81
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.81
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.81
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.81
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.8
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 99.8
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.78
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 99.78
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 99.78
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.77
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 99.76
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 99.76
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.76
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.75
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 99.75
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.75
1b89_A449 Protein (clathrin heavy chain); triskelion, coated 99.75
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 99.74
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 99.74
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 99.73
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.73
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 99.72
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 99.72
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 99.71
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.71
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 99.7
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.69
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.69
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 99.68
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 99.67
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.66
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 99.66
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 99.66
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 99.65
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 99.65
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 99.64
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.64
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 99.62
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 99.62
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 99.62
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 99.61
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.6
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 99.6
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 99.6
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 99.6
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 99.6
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 99.59
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 99.59
3q49_B137 STIP1 homology and U box-containing protein 1; E3 99.59
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 99.59
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 99.58
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 99.57
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 99.56
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 99.56
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 99.56
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.56
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 99.56
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 99.55
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 99.55
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 99.54
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 99.54
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 99.53
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 99.53
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 99.53
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 99.52
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 99.52
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 99.51
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 99.51
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 99.5
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 99.5
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 99.49
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 99.49
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 99.49
3u3w_A293 Transcriptional activator PLCR protein; ternary co 99.49
3q49_B137 STIP1 homology and U box-containing protein 1; E3 99.48
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 99.48
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.47
3u3w_A293 Transcriptional activator PLCR protein; ternary co 99.45
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 99.45
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 99.45
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 99.44
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 99.44
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 99.43
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.43
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 99.42
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 99.41
3k9i_A117 BH0479 protein; putative protein binding protein, 99.41
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 99.41
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 99.4
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 99.4
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 99.38
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 99.38
3k9i_A117 BH0479 protein; putative protein binding protein, 99.38
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 99.37
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 99.36
4b4t_Q 434 26S proteasome regulatory subunit RPN6; hydrolase, 99.34
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 99.33
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 99.31
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.3
2kat_A115 Uncharacterized protein; NESG, structure, structur 99.29
2kat_A115 Uncharacterized protein; NESG, structure, structur 99.28
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 99.26
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 99.23
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 99.22
2l6j_A111 TPR repeat-containing protein associated with HSP; 99.2
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 99.2
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 99.2
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 99.13
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 99.13
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 99.09
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 99.07
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 99.05
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 99.05
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 99.04
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 99.02
2l6j_A111 TPR repeat-containing protein associated with HSP; 99.02
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 99.01
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 98.92
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 98.91
1klx_A138 Cysteine rich protein B; structural genomics, heli 98.89
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.85
1klx_A138 Cysteine rich protein B; structural genomics, heli 98.82
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 98.82
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 98.79
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.74
1pc2_A152 Mitochondria fission protein; unknown function; NM 98.68
1pc2_A152 Mitochondria fission protein; unknown function; NM 98.47
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 98.35
3qww_A433 SET and MYND domain-containing protein 2; methyltr 98.22
3qww_A433 SET and MYND domain-containing protein 2; methyltr 98.17
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 98.13
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 98.12
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 98.03
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 97.98
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 97.69
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 97.65
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 97.53
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 97.51
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 97.28
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 97.15
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 97.1
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 97.06
4gns_B 754 Protein CSD3, chitin biosynthesis protein CHS6; FN 96.95
4gns_B 754 Protein CSD3, chitin biosynthesis protein CHS6; FN 96.94
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 96.9
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 96.9
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 96.89
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 96.77
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 96.67
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 96.57
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 96.55
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 96.45
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 96.35
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 96.35
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 96.23
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 96.1
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 96.03
2wvi_A164 Mitotic checkpoint serine/threonine-protein kinase 96.01
4fhn_B1139 Nucleoporin NUP120; protein complex,structural pro 95.72
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 95.65
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 95.55
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 95.31
4fhn_B1139 Nucleoporin NUP120; protein complex,structural pro 95.28
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 95.25
2wvi_A164 Mitotic checkpoint serine/threonine-protein kinase 95.21
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 95.21
1qsa_A 618 Protein (soluble lytic transglycosylase SLT70); al 95.06
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 94.78
1qsa_A 618 Protein (soluble lytic transglycosylase SLT70); al 94.65
1ya0_A497 SMG-7 transcript variant 2; alpha-helical repeat, 94.45
4b4t_S 523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 94.01
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 93.93
3kae_A242 CDC27, possible protein of nuclear scaffold; tetra 93.32
1ya0_A497 SMG-7 transcript variant 2; alpha-helical repeat, 93.1
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 92.9
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 92.37
3kae_A242 CDC27, possible protein of nuclear scaffold; tetra 87.8
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 84.51
3lvg_A 624 Clathrin heavy chain 1; SELF assembly, coated PIT, 82.3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
Probab=100.00  E-value=1.6e-38  Score=292.45  Aligned_cols=343  Identities=15%  Similarity=0.123  Sum_probs=302.3

Q ss_pred             HHHHHHHHHhchhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcc
Q 015351           42 EQILREARERQEAEIRPPKQKITDSTELADYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVD  121 (408)
Q Consensus        42 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  121 (408)
                      .+.++++.+..|.......... ......+..++|...++++++.+|.++.+|..+|.++...|++++|+..|++++..+
T Consensus        19 ~~~~~~~~~~~p~~~~~~~~l~-~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   97 (388)
T 1w3b_A           19 ERHCMQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK   97 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            4455666666655421111111 111122345679999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHH
Q 015351          122 YRNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIK  200 (408)
Q Consensus       122 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~  200 (408)
                      |+++.+|..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|...|+++++..|+ ...|..++.
T Consensus        98 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  177 (388)
T 1w3b_A           98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC  177 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998 899999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChH
Q 015351          201 FELRYNEVERARQIYERFVQCHPK-VSTWIKYAKFEMKMGEVDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETE  279 (408)
Q Consensus       201 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~  279 (408)
                      ++...|++++|+..|+++++..|+ ...+..+|.++...|++++|...|++++...|+   ++.++..++.++...|+++
T Consensus       178 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~  254 (388)
T 1w3b_A          178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN---HAVVHGNLACVYYEQGLID  254 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---CHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999985 778999999999999999999999999999998   7889999999999999999


Q ss_pred             HHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 015351          280 RARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERA  359 (408)
Q Consensus       280 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A  359 (408)
                      +|+..|+++++..|.+  +..+..++.++...|+        +++|+..|++++..+|.++.+|..++.++...|++++|
T Consensus       255 ~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  324 (388)
T 1w3b_A          255 LAIDTYRRAIELQPHF--PDAYCNLANALKEKGS--------VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             HHHHHHHHHHHTCSSC--HHHHHHHHHHHHHHSC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999987  6789999999999999        66799999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCChhHHhhhcC
Q 015351          360 REVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYQ  408 (408)
Q Consensus       360 ~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~~~~A~~~~~  408 (408)
                      +..|+++++..|++..         .+..++..+ ...|++++|++.|+
T Consensus       325 ~~~~~~al~~~p~~~~---------~~~~l~~~~-~~~g~~~~A~~~~~  363 (388)
T 1w3b_A          325 VRLYRKALEVFPEFAA---------AHSNLASVL-QQQGKLQEALMHYK  363 (388)
T ss_dssp             HHHHHHHTTSCTTCHH---------HHHHHHHHH-HTTTCCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcHH---------HHHHHHHHH-HHcCCHHHHHHHHH
Confidence            9999999999998875         566777777 48899999998763
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Back     alignment and structure
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* Back     alignment and structure
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} Back     alignment and structure
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 408
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 8e-26
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 1e-14
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 7e-09
d2onda1 308 a.118.8.7 (A:242-549) Cleavage stimulation factor 2e-06
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 3e-06
d2onda1 308 a.118.8.7 (A:242-549) Cleavage stimulation factor 7e-05
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 7e-10
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 0.001
d2c2la1201 a.118.8.1 (A:24-224) STIP1 homology and U box-cont 0.002
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (259), Expect = 8e-26
 Identities = 56/274 (20%), Positives = 106/274 (38%), Gaps = 34/274 (12%)

Query: 93  VWIKYAKWEESQK--------DFNRARSVWERALEVDYRNHTLWLKYAE----------- 133
           +W KY +WE+S             R    +E+ L V   +  +W + A+           
Sbjct: 10  MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 69

Query: 134 ---VEMKNKFINHARNVWDRAV-TLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMHWM 189
              +     F + A N+++RA+ TLL +   L++ Y   EE          I+ R +   
Sbjct: 70  KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 129

Query: 190 PDQQG--WLSYIKFELRYNEVERARQIYERFVQCHPKVSTWIKYAKFEMK--MGEVDRAR 245
                  ++ Y+KF  R   ++  R I+++  +           A         +   A 
Sbjct: 130 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189

Query: 246 NVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFAL--DHIPKGRAEDLYRK 303
            ++E  ++K  D  E     +A+ ++     E    R +++  L    +P  ++ +++ +
Sbjct: 190 KIFELGLKKYGDIPE---YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 246

Query: 304 FVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNP 337
           F+AFE   GD   I    V KRRF    E  +  
Sbjct: 247 FLAFESNIGDLASILK--VEKRRFTAFREEYEGK 278
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 100.0
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 100.0
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.97
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.96
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.94
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.93
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.92
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.9
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.9
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.9
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.89
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.87
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.85
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.78
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.68
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.67
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.67
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.66
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 99.63
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 99.62
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.6
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.6
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.58
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.56
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.55
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.54
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 99.5
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.49
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 99.48
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.45
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.44
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 99.43
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 99.42
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 99.42
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 99.42
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 99.42
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 99.41
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.36
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 99.35
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 99.33
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 99.32
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 99.29
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 99.28
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 99.27
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 99.1
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 99.07
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 99.03
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 98.99
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.91
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 98.89
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 98.83
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.78
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 98.22
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 98.12
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 98.11
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 97.91
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 97.84
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 97.05
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 97.04
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 95.76
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=268.35  Aligned_cols=306  Identities=16%  Similarity=0.161  Sum_probs=281.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCChHHHHHHHHHHHhccCHHHHHHHHHH
Q 015351           71 DYRLRKRKEFEDLIRRVRWNTGVWIKYAKWEESQKDFNRARSVWERALEVDYRNHTLWLKYAEVEMKNKFINHARNVWDR  150 (408)
Q Consensus        71 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  150 (408)
                      |.+++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+.+
T Consensus        13 G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~   92 (388)
T d1w3ba_          13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH   92 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccc
Confidence            44677999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHhCCCc--------------------------------------------------------------------hHHH
Q 015351          151 AVTLLPRV--------------------------------------------------------------------DQLW  162 (408)
Q Consensus       151 al~~~p~~--------------------------------------------------------------------~~~~  162 (408)
                      ++...|..                                                                    ..++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (388)
T d1w3ba_          93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW  172 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHH
Confidence            88776643                                                                    3566


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCC
Q 015351          163 YKYIHMEEMLGNVAGARQIFERWMHWMPD-QQGWLSYIKFELRYNEVERARQIYERFVQCHP-KVSTWIKYAKFEMKMGE  240 (408)
Q Consensus       163 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~a~~~~~~~~  240 (408)
                      ..+|.++...|++++|...++++++.+|+ ..+|..++.++...|++++|+..|+++....| ....+..+|.++...|+
T Consensus       173 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  252 (388)
T d1w3ba_         173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL  252 (388)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCC
Confidence            77788888899999999999999999999 89999999999999999999999999999887 46788999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHcCCchhHHHH
Q 015351          241 VDRARNVYERAVEKLADDEEAEQLFVAFAEFEERCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDA  320 (408)
Q Consensus       241 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~  320 (408)
                      +++|+..|+++++..|+   ++.+|..+|.++...|++++|+..|++++...|.+  ...+..++.++...|+       
T Consensus       253 ~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~-------  320 (388)
T d1w3ba_         253 IDLAIDTYRRAIELQPH---FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH--ADSLNNLANIKREQGN-------  320 (388)
T ss_dssp             HHHHHHHHHHHHHTCSS---CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTC-------
T ss_pred             HHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc--chhhhHHHHHHHHCCC-------
Confidence            99999999999999998   78999999999999999999999999999999987  6788889999999998       


Q ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhhcCC
Q 015351          321 IVGKRRFQYEDEVRKNPMNYDIWFDYIRLEESVGNKERAREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGD  399 (408)
Q Consensus       321 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~w~~~~~l~~~~a~~~e~~~g~  399 (408)
                       +++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++|++.+|+++.         .|..+|..+. +.||
T Consensus       321 -~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~---------a~~~lg~~~~-~~~D  388 (388)
T d1w3ba_         321 -IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD---------AYSNMGNTLK-EMQD  388 (388)
T ss_dssp             -HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH---------HHHHHHHHHH-HTCC
T ss_pred             -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHH-HcCC
Confidence             667999999999999999999999999999999999999999999999999886         5667777773 6775
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure