Citrus Sinensis ID: 015355

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAGQDEKVANEVEDVSLSVEVSSVRDCFPKSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHHHccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccEEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccEEEEEEcccEEEEEEEEEccEEEEccccccccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHccHHHHHHHHHHHcHHHHHHHHHcccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHcccccccHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccEEEEEEEccccEEEEEEEEccEEEEccccccccccccEcEEEEEc
Coil and Loop (DISEMBL)
MATLFLSSsfllplsshklwqwhpprkhlsfticcasssssnksssssssssrssrkvksnEELYNDLREFLSTvglseshvpsmkelsahgrddLANIVRRRGYKFIRQLLKsstkpgfngfvaekslagqdekvanEVEDVSLSVEVssvrdcfpkslsdpsfvgevspnlnghyekaDMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFatvnhplsedhlgtgvegadfdsseaRRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVagsfngwhhrikmdplpsssiiepirsrkSRLWSTVLWLYPGTYEIKFIVdgqwkvdpqresvtkggicnnilrvi
Flexible Loop (DISEMBL)
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCASssssnksssssssssrssrkvksnEELYNDLREFLSTVGLSESHVPSMkelsahgrddlaNIVRRRGYKFIRQLlksstkpgfnGFVAEKSLAGQDEKVANEVEDVSLSVEVSSVRDCFPkslsdpsfvgevSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALsvlqtkavteinkaeklisdkdeELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHrikmdplpsssiiepirsrksrlwSTVLWLYPGTYEIKFIVDGQWKVDpqresvtkggicnnilrvi
Low Complexity Region (SEG)
MATlflsssfllplssHKLWQWHPPRKHLSFTICCAsssssnksssssssssrssrkvksnEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAGQDEKVANevedvslsvevssvRDCFPKSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDplpsssiiepirsrksrLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Disordered region (IsUnstruct)
***LFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCA**********************************************************DLANIVRRRGYKFIRQLLKSSTKPGFNGFVA**********************************************************EKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVN*********************************LKFML******************LALSVLQTKAVTEINKA**LI******LIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILR**
Disordered Region (DISOPRED)
*******SSFLLPLSSHKLWQWHPPRKHLSFTICC****************************LYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYK****************************************************************************************************************************************************************************************************************GLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSS****IRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Disordered Region (DISEMBL)
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTIC***************************EELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAGQDEKVANEVEDVSLSVEVSSVRDCFPKSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Disordered Region (DISPRO)
**TLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCAS**********************SNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKS****************************************************************KADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAGQDEKVANEVEDVSLSVEVSSVRDCFPKSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEARRRENQLExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAVTExxxxxxxxxxxxxxxxxxxxxLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
Q9R078	270	5'-AMP-activated protein	yes	no	0.252	0.381	0.296	8e-05
P80386	270	5'-AMP-activated protein	yes	no	0.252	0.381	0.304	0.0001
P78789	298	Uncharacterized protein C	yes	no	0.127	0.174	0.363	0.0002
O43741	272	5'-AMP-activated protein	yes	no	0.181	0.272	0.340	0.0005
Q9QZH4	271	5'-AMP-activated protein	no	no	0.181	0.273	0.340	0.0005
Q6PAM0	271	5'-AMP-activated protein	no	no	0.181	0.273	0.340	0.0005
Q9Y478	270	5'-AMP-activated protein	no	no	0.178	0.270	0.340	0.0006
Q5BIS9	270	5'-AMP-activated protein	no	no	0.178	0.270	0.329	0.0006
Q5R801	270	5'-AMP-activated protein	yes	no	0.178	0.270	0.340	0.0006
P80387	122	5'-AMP-activated protein	no	no	0.178	0.598	0.340	0.0007

>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 22/125 (17%)

Query: 291 EINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRI 343
           +I  +E++ + + EE +A +  L   +    Q       ++G G+ V ++GSFN W    
Sbjct: 45  DIFHSEEIKAPEKEEFLAWQHDLEANDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKL- 103

Query: 344 KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT-KGGICN 402
              PL          +R    +  +L L  G ++ KF VDGQW  DP    VT + G  N
Sbjct: 104 ---PL----------TRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVN 150

Query: 403 NILRV 407
           NI++V
Sbjct: 151 NIIQV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).
Mus musculus (taxid: 10090)

>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 22/125 (17%)

Query: 291 EINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRI 343
           +I   E++ + + EE +A +  L   E    Q       ++G G+ V ++GSFN W    
Sbjct: 45  DIFHTEEMKAPEKEEFLAWQHDLEVNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKL- 103

Query: 344 KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT-KGGICN 402
              PL          +R    +  +L L  G ++ KF VDGQW  DP    VT + G  N
Sbjct: 104 ---PL----------TRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVN 150

Query: 403 NILRV 407
           NI++V
Sbjct: 151 NIIQV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|P78789|YC63_SCHPO Uncharacterized protein C1919.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1919.03c PE=1 SV=2

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 14/66 (21%)

Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 380
           I++ G GE+V V GSF+ W  +I++               KS  ++ +L L PGT   KF
Sbjct: 103 IRWRGGGEVVYVTGSFSRWKKKIQL--------------LKSEDYTVLLQLRPGTQRFKF 148

Query: 381 IVDGQW 386
           +VDG W
Sbjct: 149 LVDGIW 154

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)

Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 380
           I++S  G+ V ++GSFN W  +I +           I+S     +  +L L  G ++ KF
Sbjct: 81  IRWSEGGKEVFISGSFNNWSTKIPL-----------IKSHND--FVAILDLPEGEHQYKF 127

Query: 381 IVDGQWKVDPQRESVT-KGGICNNILRV 407
            VDGQW  DP    VT + G  NN++ V
Sbjct: 128 FVDGQWVHDPSEPVVTSQLGTINNLIHV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)

Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 380
           I++S  G+ V ++GSFN W  +I +           I+S     +  +L L  G ++ KF
Sbjct: 80  IRWSEGGKEVFISGSFNNWSTKIPL-----------IKSHND--FVAILDLPEGEHQYKF 126

Query: 381 IVDGQWKVDPQRESVT-KGGICNNILRV 407
            VDGQW  DP    VT + G  NN++ V
Sbjct: 127 FVDGQWVHDPSEPVVTSQLGTINNLIHV 154

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)

Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 380
           I++S  G+ V ++GSFN W  +I +           I+S     +  +L L  G ++ KF
Sbjct: 80  IRWSEGGKEVFISGSFNNWSTKIPL-----------IKSHND--FVAILDLPEGEHQYKF 126

Query: 381 IVDGQWKVDPQRESVT-KGGICNNILRV 407
            VDGQW  DP    VT + G  NN++ V
Sbjct: 127 FVDGQWVHDPSEPVVTSQLGTINNLIHV 154

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Mus musculus (taxid: 10090)

>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 15/88 (17%)

Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 380
            +++G G+ V ++GSFN W       PL          +R    +  +L L  G ++ KF
Sbjct: 82  FRWTGGGKEVYLSGSFNNWSKL----PL----------TRSHNNFVAILDLPEGEHQYKF 127

Query: 381 IVDGQWKVDPQRESVT-KGGICNNILRV 407
            VDGQW  DP    VT + G  NNI++V
Sbjct: 128 FVDGQWTHDPSEPIVTSQLGTVNNIIQV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 15/88 (17%)

Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 380
            +++G G+ V ++GSFN W       PL          +R    +  +L L  G ++ KF
Sbjct: 82  FRWTGGGKEVYLSGSFNNWSKL----PL----------TRSHNNFVAILDLPEGEHQYKF 127

Query: 381 IVDGQWKVDPQRESVT-KGGICNNILRV 407
            VDGQW  DP    VT + G  NN+++V
Sbjct: 128 FVDGQWTHDPSEPVVTSQLGTVNNVIQV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Bos taurus (taxid: 9913)

>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 15/88 (17%)

Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 380
            +++G G+ V ++GSFN W       PL          +R    +  +L L  G ++ KF
Sbjct: 82  FRWTGGGKEVYLSGSFNNWSKL----PL----------TRSHNNFVAILDLPEGEHQYKF 127

Query: 381 IVDGQWKVDPQRESVT-KGGICNNILRV 407
            VDGQW  DP    VT + G  NNI++V
Sbjct: 128 FVDGQWTHDPSEPIVTSQLGTVNNIIQV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Pongo abelii (taxid: 9601)

>sp|P80387|AAKB1_PIG 5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus scrofa GN=PRKAB1 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 15/88 (17%)

Query: 321 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 380
            +++G G+ V ++GSFN W            S +   RS  + +   +L L  G ++ KF
Sbjct: 47  FRWTGGGKEVYLSGSFNNW------------SKLPLTRSHNNFV--AILDLPEGEHQYKF 92

Query: 381 IVDGQWKVDPQRESVT-KGGICNNILRV 407
           +VDGQW  DP    VT + G  NNI++V
Sbjct: 93  LVDGQWTHDPSEPVVTSQLGTVNNIIQV 120

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
297739960	471	unnamed protein product [Vitis vinifera]	0.887	0.768	0.539	1e-111
255556890	612	hypothetical protein RCOM_1354150 [Ricin	0.696	0.464	0.513	1e-77
224068793	626	predicted protein [Populus trichocarpa]	0.666	0.434	0.510	2e-76
356545991	622	PREDICTED: uncharacterized protein LOC10	0.671	0.440	0.546	3e-74
449451223	649	PREDICTED: uncharacterized protein LOC10	0.676	0.425	0.478	4e-69
186519755	598	5'-AMP-activated protein kinase-like pro	0.539	0.367	0.526	2e-59
297806299	636	hypothetical protein ARALYDRAFT_487117 [	0.539	0.345	0.505	3e-59
7378624	583	putative protein [Arabidopsis thaliana]	0.399	0.279	0.466	4e-31
168029298	548	predicted protein [Physcomitrella patens	0.397	0.295	0.395	2e-24
297790768	334	hypothetical protein ARALYDRAFT_359028 [	0.191	0.233	0.658	1e-16

>gi|297739960|emb|CBI30142.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/423 (53%), Positives = 273/423 (64%), Gaps = 61/423 (14%)

Query: 46  SSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGY 105
           +SS    R+ RKVKS++EL ND+REF+S VGL E H+PSMKELS HGR DLANIVRRRGY
Sbjct: 47  ASSIKKPRARRKVKSDQELCNDIREFVSAVGLPEGHLPSMKELSQHGRTDLANIVRRRGY 106

Query: 106 KFIRQLLKSSTKPGFNGFVAEKSLA--------------GQDEKVANEVEDVSLSVEVSS 151
           K I+ LL S+TK   N F   +SL               GQDEK  + VEDV LS + S 
Sbjct: 107 KHIKDLLSSATKTDTNEFDVGESLTENQDATSDYEDESTGQDEKAKDLVEDVPLSSKGSI 166

Query: 152 VRDCFPKSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDR---------- 201
           +      +  DPSF  +    +      +  +EKVA FIQNG+LD IED           
Sbjct: 167 MESGVTNANIDPSFNNDEQSCIRESSTHSSFQEKVAKFIQNGELDTIEDNDYGILSGAAA 226

Query: 202 ----------------------------------AMILNGSALTSKQIASFATVNHPLSE 227
                                             A ILNGS L S QI    T N PL +
Sbjct: 227 EEGKGVIDSENTIELESRPLAELHVEHASSGSNAAKILNGSTLFSDQIVPPVTRNDPLGD 286

Query: 228 DHLGT-GVEGADFDS--SEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVL 284
           D   + G+  ADFD+   E    ENQ+E++HLK MLHQKE+ELS+LK+QIEKEKLAL++L
Sbjct: 287 DRFSSEGLISADFDNLGIETNEGENQVEVNHLKLMLHQKELELSQLKKQIEKEKLALTIL 346

Query: 285 QTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIK 344
           QTKA TEI+KA+K++ +KD EL AAEESLSGL+ V+IQYSGDGEIVEVAGSFNGWHHRIK
Sbjct: 347 QTKAETEISKAQKIVLEKDAELNAAEESLSGLKEVQIQYSGDGEIVEVAGSFNGWHHRIK 406

Query: 345 MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNI 404
           MDP PSSS  EP+ SRKSRLWSTVLWLYPG YEIKF++DGQW++DPQ E+VT+G I NNI
Sbjct: 407 MDPQPSSSSKEPVGSRKSRLWSTVLWLYPGLYEIKFVIDGQWRIDPQSETVTRGTIDNNI 466

Query: 405 LRV 407
           LRV
Sbjct: 467 LRV 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556890|ref|XP_002519478.1| hypothetical protein RCOM_1354150 [Ricinus communis] gi|223541341|gb|EEF42892.1| hypothetical protein RCOM_1354150 [Ricinus communis]

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 176/343 (51%), Positives = 211/343 (61%), Gaps = 59/343 (17%)

Query: 121 NGFVAEKSL---AGQDEKVANEVEDVSLSVEVSSVRDCFPKSLSDPSFV-GEVSPNLNGH 176
           N  + EK+L     QDEKV +  E +SL  EVS++   +P +  D S V G    N N  
Sbjct: 273 NASLEEKALNIAIDQDEKVNSMAEVISLRSEVSNLE--YPAN--DGSMVLGLNYSNRNSM 328

Query: 177 ----YEKADMEEKVANFIQNGDLDIIEDRA------------------------------ 202
                  + +E+KVA FIQ+GDLD IED                                
Sbjct: 329 PVDPAANSLLEDKVAKFIQSGDLDAIEDNVYAILDETAEESKGSSEPENETEIQSETPTS 388

Query: 203 -------------MILNGSALTSKQIASFATVNHPLSEDHL-GTGVEGADFDSS---EAR 245
                        + LNGS   SK ++     NHP+  D L   G+   + D     E  
Sbjct: 389 ENDKHADNGSNAPLALNGSISISKDVSPPMRANHPVRNDELPAEGLASFNVDKDLDVEIS 448

Query: 246 RRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEE 305
           +REN +EI+HLKFMLHQKE+ELS LKEQIEKEK+ALS LQ KA  EI KA+KLIS+KD E
Sbjct: 449 KRENHVEINHLKFMLHQKELELSHLKEQIEKEKIALSDLQNKAEMEIKKAQKLISEKDAE 508

Query: 306 LIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLW 365
           L+AAEESLSGL  V+IQY+GDGEIVEVAGSFNGWHHRIKMDP PSSS+ +P  SRKS+LW
Sbjct: 509 LLAAEESLSGLMEVKIQYNGDGEIVEVAGSFNGWHHRIKMDPQPSSSVRDPAASRKSKLW 568

Query: 366 STVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI 408
           S +LWLYPG YEIKFIVDG W +DPQ E VT+GGICNN+LRVI
Sbjct: 569 SIMLWLYPGVYEIKFIVDGHWTIDPQGEMVTRGGICNNVLRVI 611

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068793|ref|XP_002326201.1| predicted protein [Populus trichocarpa] gi|222833394|gb|EEE71871.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 165/323 (51%), Positives = 203/323 (62%), Gaps = 51/323 (15%)

Query: 132 QDEKVANEVEDVSLSVEVSSVRDCFPKSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQ 191
           QDEKV    E++SLS  VS  +  +  ++ + S  G +  N +     + + EKVA FIQ
Sbjct: 306 QDEKVGIGAEEMSLSSGVSDTQ--YYANVKNIS--GLIDNNNSCMPANSSLVEKVAKFIQ 361

Query: 192 NGDLDIIEDR--------------------------------------------AMILNG 207
           NGDLD IED                                             A  LN 
Sbjct: 362 NGDLDTIEDNVYGLSNGSGSGESKGFREPENMTEDHSKISSEENFENAVGESDTASTLNE 421

Query: 208 SALTSKQIASFATVNHPLSEDHLGTGVEGADFDSS---EARRRENQLEIDHLKFMLHQKE 264
           +  TS Q+    TV+  L  +    G+ GAD D     E  +++NQ+EI+HLKF+LHQKE
Sbjct: 422 NLSTSMQVVPSVTVSRALRNESPAEGLAGADVDQDLDIETNKKDNQIEINHLKFILHQKE 481

Query: 265 MELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYS 324
           +ELS+LKEQIEKEKLALS LQTKA  EI+KA+KLIS+KD EL+ AEESLSGL  VE+ Y 
Sbjct: 482 LELSQLKEQIEKEKLALSALQTKAEREISKAQKLISEKDAELLVAEESLSGLVEVEVAYC 541

Query: 325 GDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDG 384
           G+GE+VEVAGSFNGWHH +++DP PSSSI +   SRKSRLWS +LWLYPG YEIKFIVDG
Sbjct: 542 GNGEMVEVAGSFNGWHHPVRLDPQPSSSIKDHFGSRKSRLWSAMLWLYPGVYEIKFIVDG 601

Query: 385 QWKVDPQRESVTKGGICNNILRV 407
            W+VDPQ ESVTKGGICNN+LRV
Sbjct: 602 HWRVDPQMESVTKGGICNNVLRV 624

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545991|ref|XP_003541416.1| PREDICTED: uncharacterized protein LOC100805984 [Glycine max]

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 163/298 (54%), Positives = 208/298 (69%), Gaps = 24/298 (8%)

Query: 128 SLAGQDEKVANEVEDVSLSVEVSSVRDCFPKSLSDPSFVGEV-------SPNLNGHYEKA 180
           +L G D+   +  EDV+ + EVS VR    ++LSD + +  +       S NL+      
Sbjct: 329 ALEGLDDSKDDIAEDVATTSEVS-VR----ENLSDDNRLNSIVHSADSSSTNLDT-LANL 382

Query: 181 DMEEKVANFIQNGDLDIIE------DRAMILNGSALTSKQIASFATVN--HPLSEDHLGT 232
            + EKVANFIQNGDLD +E      D  ++ +G++LTS Q+     ++    L +DHL  
Sbjct: 383 SLREKVANFIQNGDLDPVEGTHLPEDNNVMAHGNSLTSNQVVPSGALDLDQSLWDDHLPH 442

Query: 233 GVEGADFD---SSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAV 289
                DF+    +EA + +N+ EI+HLKFML+QKE+ELSRLKEQIEKEKLALSVLQTKA 
Sbjct: 443 EDLTTDFNKDLDTEAPKVQNESEINHLKFMLYQKELELSRLKEQIEKEKLALSVLQTKAE 502

Query: 290 TEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLP 349
            EI+KA KLIS+KD EL  AEESLSGL+ V+I++ GDG++VEVAGSFNGWHHRI+MD   
Sbjct: 503 AEISKARKLISEKDAELHVAEESLSGLKEVQIEFCGDGDVVEVAGSFNGWHHRIEMDLQQ 562

Query: 350 SSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 407
           S+S I+   SR SR WST+LWLYPG YEIKF+VDG+W  DPQRESVT+G ICNNILRV
Sbjct: 563 STSAIDLDGSRSSRCWSTMLWLYPGVYEIKFVVDGKWITDPQRESVTRGHICNNILRV 620

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451223|ref|XP_004143361.1| PREDICTED: uncharacterized protein LOC101203013 [Cucumis sativus] gi|449482584|ref|XP_004156334.1| PREDICTED: uncharacterized protein LOC101225132 [Cucumis sativus]

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 155/324 (47%), Positives = 194/324 (59%), Gaps = 48/324 (14%)

Query: 132 QDEKVANEVEDVSLSVEVSSVRDCFPKSLSDPSFVGEVSPN-LNGHYEKADMEEKVANFI 190
           Q EK  N V+ VSLS E++ + D       D +   E S + L  + E+  + EKVA FI
Sbjct: 324 QVEKEDNCVDGVSLSAEMTIIDDRSSGLNIDRALAHEDSSDKLVKYSEELSLAEKVARFI 383

Query: 191 QNGDLDIIEDR--------------------------------------------AMILN 206
           QNGDLDI++D                                              M  N
Sbjct: 384 QNGDLDIVDDNFDATLSESGAGKGNGSVAATNAEESEINFHVEAFSEDTTASRGSLMASN 443

Query: 207 GSALTSKQIASFATVNHPLSEDHLGTGVEGADFD---SSEARRRENQLEIDHLKFMLHQK 263
           GSA       S  TV   + ++   T       +    +E +  ENQ+EID LKFMLHQK
Sbjct: 444 GSASEFDDKVSTTTVGQLIRDNQPSTEALNGQIEKVSGAEIKVSENQVEIDRLKFMLHQK 503

Query: 264 EMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQY 323
           E+ELS+LKEQIE++KLALS  Q+KA  EI+ A+KLI ++D EL+AAEE L GLE V+I Y
Sbjct: 504 ELELSQLKEQIERDKLALSASQSKAEAEISLAQKLILERDSELVAAEECLYGLEEVQIHY 563

Query: 324 SGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD 383
           SG+GEIVEVAGSFNGWHH+IKMDP PSS+ ++ + S+K R WSTVLWLYPG YEIKF+VD
Sbjct: 564 SGEGEIVEVAGSFNGWHHKIKMDPQPSSNHLDSVNSKKHRHWSTVLWLYPGVYEIKFVVD 623

Query: 384 GQWKVDPQRESVTKGGICNNILRV 407
           G WK+DP RES+TKG I NNILRV
Sbjct: 624 GHWKIDPHRESLTKGAISNNILRV 647

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186519755|ref|NP_195962.2| 5'-AMP-activated protein kinase-like protein [Arabidopsis thaliana] gi|332003218|gb|AED90601.1| 5'-AMP-activated protein kinase-like protein [Arabidopsis thaliana]

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 137/260 (52%), Positives = 159/260 (61%), Gaps = 40/260 (15%)

Query: 182 MEEKVANFIQNGDLDII-EDRAMI--------------------------------LNGS 208
           +EEK   FIQNG LD +  D   I                                LNGS
Sbjct: 342 IEEKTTRFIQNGYLDTVGADENDIPNESCPEESSETTKGGEYIGDSLGGPRIMSTPLNGS 401

Query: 209 ALTSKQIASFATVNHPLSEDHLGTGVEGADFDSS-EARRRENQLEIDHLKFMLHQKEMEL 267
           AL  K+I     VN          G  G D D   E R+RENQ+EID L+FML QKE+EL
Sbjct: 402 ALALKEIIHATEVNSSDRNSDQRDGSVGLDTDPHHETRKRENQVEIDRLRFMLDQKELEL 461

Query: 268 SRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDG 327
           SRLKEQIEKEKL+LSVLQ +A TEI KA+ LIS+K+ EL  AEESLSGL+ V I+Y GDG
Sbjct: 462 SRLKEQIEKEKLSLSVLQRQAETEIQKAQMLISEKEVELQEAEESLSGLQEVVIEYCGDG 521

Query: 328 EIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK 387
             VEV GSFNGW HR+ M+   S SI       K + WST+LWLYPGTYEIKFIVDGQW 
Sbjct: 522 NAVEVTGSFNGWQHRVGMELQASKSI------GKQKCWSTLLWLYPGTYEIKFIVDGQWI 575

Query: 388 VDPQRESVTKGGICNNILRV 407
            DPQ++SVT+G I NNIL+V
Sbjct: 576 TDPQKDSVTRGHISNNILKV 595

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806299|ref|XP_002871033.1| hypothetical protein ARALYDRAFT_487117 [Arabidopsis lyrata subsp. lyrata] gi|297316870|gb|EFH47292.1| hypothetical protein ARALYDRAFT_487117 [Arabidopsis lyrata subsp. lyrata]

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 133/263 (50%), Positives = 160/263 (60%), Gaps = 43/263 (16%)

Query: 182 MEEKVANFIQNGDLDIIEDR------------------------------------AMIL 205
           +EEK   FIQNG LD ++D                                     +M  
Sbjct: 378 IEEKTTRFIQNGYLDTVDDDENGIPNESCPEDTKEGVETTKGGAYIGDSYGGQRSISMPP 437

Query: 206 NGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDS-SEARRRENQLEIDHLKFMLHQKE 264
           NGSAL  +++     +N          G    D DS  E  +RENQ+EID L+FMLHQKE
Sbjct: 438 NGSALALEEVTHAKELNSSDRNSDQRDGSADLDTDSHDETMKRENQVEIDRLRFMLHQKE 497

Query: 265 MELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYS 324
           +ELSRLKEQIEKEKL+LSVLQ +A TEI KA+ LIS+K+ EL  AEESLSGL+ V I+Y 
Sbjct: 498 LELSRLKEQIEKEKLSLSVLQRQAETEIQKAQMLISEKEVELRDAEESLSGLQEVVIEYC 557

Query: 325 GDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDG 384
           GDG +VEV GSFNGW HR+ M+   S SI       K + WST+LWLYPGTYEIKFIVDG
Sbjct: 558 GDGNVVEVTGSFNGWQHRVGMELQASKSI------GKQKCWSTLLWLYPGTYEIKFIVDG 611

Query: 385 QWKVDPQRESVTKGGICNNILRV 407
           QW  DPQ++SVT+G I NNIL V
Sbjct: 612 QWITDPQKDSVTRGHITNNILIV 634

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7378624|emb|CAB83300.1| putative protein [Arabidopsis thaliana]

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 110/206 (53%), Gaps = 43/206 (20%)

Query: 182 MEEKVANFIQNGDLDII-EDRAMI--------------------------------LNGS 208
           +EEK   FIQNG LD +  D   I                                LNGS
Sbjct: 342 IEEKTTRFIQNGYLDTVGADENDIPNESCPEESSETTKGGEYIGDSLGGPRIMSTPLNGS 401

Query: 209 ALTSKQIASFATVNHPLSEDHLGTGVEGADFDSS-EARRRENQLEIDHLKFMLHQKEMEL 267
           AL  K+I     VN          G  G D D   E R+RENQ+EID L+FML QKE+EL
Sbjct: 402 ALALKEIIHATEVNSSDRNSDQRDGSVGLDTDPHHETRKRENQVEIDRLRFMLDQKELEL 461

Query: 268 SRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDG 327
           SRLKEQIEKEK         A TEI KA+ LIS+K+ EL  AEESLSGL+ V I+Y GDG
Sbjct: 462 SRLKEQIEKEK---------AETEIQKAQMLISEKEVELQEAEESLSGLQEVVIEYCGDG 512

Query: 328 EIVEVAGSFNGWHHRIKMDPLPSSSI 353
             VEV GSFNGW HR+ M+   S SI
Sbjct: 513 NAVEVTGSFNGWQHRVGMELQASKSI 538

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168029298|ref|XP_001767163.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681659|gb|EDQ68084.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 103/167 (61%), Gaps = 5/167 (2%)

Query: 244 ARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKD 303
           A R +++ E+  L  +LH +EME  ++  ++E+ K  L++++ K   E+ +A+ +  +KD
Sbjct: 382 AGRTDSEAEVARLLALLHAREMENLKVLRELEETKAMLALVRAKHSAEMAQAKLVAVEKD 441

Query: 304 EELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPS-SSIIEPIR--SR 360
             L  AE++L  L++ ++ + G+G  VE+ GSFNGW H I++  LP  SS   P+R  + 
Sbjct: 442 LRLQVAEQALQSLKLTQVDWWGEGSRVELGGSFNGWEHHIQL--LPDLSSKSSPVRPGTP 499

Query: 361 KSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 407
              LW   LWLYPG YEIKFIVDG+W +D +RE V      NN+L V
Sbjct: 500 SPLLWRIELWLYPGVYEIKFIVDGKWVLDNRREIVQGHMGQNNLLHV 546

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790768|ref|XP_002863269.1| hypothetical protein ARALYDRAFT_359028 [Arabidopsis lyrata subsp. lyrata] gi|297309103|gb|EFH39528.1| hypothetical protein ARALYDRAFT_359028 [Arabidopsis lyrata subsp. lyrata]

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 62/79 (78%)

Query: 239 FDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKL 298
           F+  +  +RENQ+EI  L+FML QKE ELSRLKEQIEKEKL+LSVLQ +A  EI KA+ L
Sbjct: 239 FEMIQTMKRENQVEITRLRFMLRQKEQELSRLKEQIEKEKLSLSVLQRQAENEILKAQML 298

Query: 299 ISDKDEELIAAEESLSGLE 317
           +S KD EL  AEESLSGL+
Sbjct: 299 VSVKDVELQEAEESLSGLQ 317

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2142669	598	AT5G03420 "AT5G03420" [Arabido	0.482	0.329	0.593	3.9e-77
TAIR|locus:2167067	273	AT5G39790 "AT5G39790" [Arabido	0.370	0.553	0.295	1.2e-08
UNIPROTKB|P80387	122	PRKAB1 "5'-AMP-activated prote	0.252	0.844	0.272	0.00031

TAIR|locus:2142669 AT5G03420 "AT5G03420" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 3.9e-77, Sum P(3) = 3.9e-77
 Identities = 121/204 (59%), Positives = 140/204 (68%)

Query:   205 LNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSS-EARRRENQLEIDHLKFMLHQK 263
             LNGSAL  K+I     VN          G  G D D   E R+RENQ+EID L+FML QK
Sbjct:   398 LNGSALALKEIIHATEVNSSDRNSDQRDGSVGLDTDPHHETRKRENQVEIDRLRFMLDQK 457

Query:   264 EMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQY 323
             E+ELSRLKEQIEKEKL+LSVLQ +A TEI KA+ LIS+K+ EL  AEESLSGL+ V I+Y
Sbjct:   458 ELELSRLKEQIEKEKLSLSVLQRQAETEIQKAQMLISEKEVELQEAEESLSGLQEVVIEY 517

Query:   324 SGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKFIVD 383
              GDG  VEV GSFNGW HR+ M+                  WST+LWLYPGTYEIKFIVD
Sbjct:   518 CGDGNAVEVTGSFNGWQHRVGMELQASKSIGKQK------CWSTLLWLYPGTYEIKFIVD 571

Query:   384 GQWKVDPQRESVTKGGICNNILRV 407
             GQW  DPQ++SVT+G I NNIL+V
Sbjct:   572 GQWITDPQKDSVTRGHISNNILKV 595

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2167067 AT5G39790 "AT5G39790" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 50/169 (29%), Positives = 84/169 (49%)

Query:   245 RRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQ-TKAVTEINKAEKLISDKD 303
             +R+E+  EI ++K  L   E+E+  L +  E E   L + Q ++ ++       L+S  D
Sbjct:   116 KRQEH--EITNIKTELALMELEVQALVKLAE-EIANLGIPQGSRKISGKYIQSHLLSRLD 172

Query:   304 EELIAAEESLSGLEV-----VEIQYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXX 358
                   +E + G+E      V + + G  E V+V GSF+GW  R  +             
Sbjct:   173 AVQKKMKEQIKGVEAAQSKEVHVFWIGMAESVQVMGSFDGWSQREDLSPEYSALFTK--- 229

Query:   359 XXXXXLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 407
                   +ST L+L PG YE+KF+VDG+W++ P+  +  +G + NN+L V
Sbjct:   230 ------FSTTLFLRPGRYEMKFLVDGEWQISPEFPTSGEGLMENNVLVV 272

GO:0009507 "chloroplast" evidence=IDA

GO:0030247 "polysaccharide binding" evidence=IDA

UNIPROTKB|P80387 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Sus scrofa (taxid:9823)]

 Score = 96 (38.9 bits), Expect = 0.00031, P = 0.00031
 Identities = 34/125 (27%), Positives = 57/125 (45%)

Query:   291 EINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRI 343
             ++  +E++ + + EE +A +  L   +    Q       ++G G+ V ++GSFN W    
Sbjct:    10 DLYHSEEIKAPEKEEFLAWQHDLEVNDKASAQARPTVFRWTGGGKEVYLSGSFNNWS--- 66

Query:   344 KMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKG-GICN 402
             K+                   +  +L L  G ++ KF+VDGQW  DP    VT   G  N
Sbjct:    67 KLPLTRSHNN-----------FVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVN 115

Query:   403 NILRV 407
             NI++V
Sbjct:   116 NIIQV 120


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      408       339   0.00094  116 3  11 22  0.43    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  233 KB (2127 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  34.67u 0.10s 34.77t   Elapsed:  00:00:02
  Total cpu time:  34.67u 0.10s 34.77t   Elapsed:  00:00:02
  Start:  Fri May 10 20:13:39 2013   End:  Fri May 10 20:13:41 2013

GO:0005634 "nucleus" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00280219 hypothetical protein (626 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	3e-23
cd07184	86	cd07184, E_set_Isoamylase_like_N, N-terminal Early	2e-04
cd02688	82	cd02688, E_set, Early set domain associated with t	8e-04

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score = 92.3 bits (230), Expect = 3e-23
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 14/91 (15%)

Query: 319 VEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYE 377
           V  ++ G  G+ V V GSF+ W   I ++                  +S  + L PG YE
Sbjct: 2   VTFRWPGPGGKEVYVTGSFDNWQQPIPLEKSGDGE------------FSATVELPPGRYE 49

Query: 378 IKFIVDGQWKVDPQRESVT-KGGICNNILRV 407
            KFIVDG+W  DP   +VT + G  NN+L V
Sbjct: 50  YKFIVDGEWVHDPDLPTVTDEFGNLNNVLEV 80

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 13/64 (20%)

Query: 330 VEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ-WK 387
           V + G FN W      DP        P++  K+  +S  L L  G  Y+ ++++DG+ W 
Sbjct: 16  VSLVGDFNDW------DPQA-----TPMKKLKNGTFSATLDLPAGREYQFRYLIDGERWV 64

Query: 388 VDPQ 391
            DP+
Sbjct: 65  NDPE 68

E or "early" set domains are associated with the catalytic domain of isoamylase-like proteins at the N-terminal end. Isoamylase is one of the starch-debranching enzymes that catalyze the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminal domain of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and the beta subunit of AMP-activated protein kinase. Length = 86

>gnl|CDD|199878 cd02688, E_set, Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 323 YSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 382
           ++   + V + GSFNGW     +          P+      +WS  + L  GTYE K+++
Sbjct: 7   FAPGAKSVYLIGSFNGWWQAQAL----------PMTKNGGGVWSATIPLPLGTYEYKYVI 56

Query: 383 DGQWKVDP 390
           DG   V P
Sbjct: 57  DGGKNVLP 64

The E or "early" set domains of sugar utilizing enzymes are associated with different types of catalytic domains at either the N-terminal or C-terminal end. These domains may be related to the immunoglobulin and/or fibronectin type III superfamilies. Members of this family include alpha amylase, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. A subset of these members were recently identified as members of the CBM48 (Carbohydrate Binding Module 48) family. Members of the CBM48 family include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, isoamylase, and the beta subunit of AMP-activated protein kinase. Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.9
cd02861	82	E_set_proteins_like E or "early" set-like proteins	99.76
KOG1616	289	consensus Protein involved in Snf1 protein kinase	99.6
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	99.21
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	98.85
cd02854	99	Glycogen_branching_enzyme_like_N_term Glycogen bra	98.39
PF02922	85	CBM_48: Carbohydrate-binding module 48 (Isoamylase	98.33
cd05808	95	CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2	97.72
cd02860	100	Pullulanase_N_term Pullulanase domain N-terminus.	97.68
cd02855	106	Glycogen_branching_enzyme_N_term Glycogen branchin	97.52
PF00686	96	CBM_20: Starch binding domain; InterPro: IPR002044	97.51
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	97.37
cd05814	120	CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-	97.29
cd05818	92	CBM20_water_dikinase Phosphoglucan water dikinase	97.26
PRK12313	633	glycogen branching enzyme; Provisional	97.22
PRK12568	730	glycogen branching enzyme; Provisional	97.12
cd02856	103	Glycogen_debranching_enzyme_N_term Glycogen_debran	97.12
cd05809	99	CBM20_beta_amylase Beta-amylase, C-terminal CBM20	97.02
cd05820	103	CBM20_novamyl Novamyl (also known as acarviose tra	96.99
cd05811	106	CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g	96.9
PRK14706	639	glycogen branching enzyme; Provisional	96.89
cd02852	119	Isoamylase_N_term Isoamylase N-terminus domain. Is	96.87
PRK14705	1224	glycogen branching enzyme; Provisional	96.82
cd02853	85	MTHase_N_term Maltooligosyl trehalose synthase (MT	96.71
PRK05402	726	glycogen branching enzyme; Provisional	96.64
PLN02447	758	1,4-alpha-glucan-branching enzyme	96.61
cd05817	100	CBM20_DSP Dual-specificity phosphatase (DSP), N-te	96.6
cd05467	96	CBM20 The family 20 carbohydrate-binding module (C	96.59
cd05813	95	CBM20_genethonin_1 Genethonin-1, C-terminal CBM20	96.51
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	96.5
cd05816	99	CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP	96.49
cd05807	101	CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat	96.29
cd05810	97	CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol	96.14
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	96.03
PLN02316	1036	synthase/transferase	95.67
PRK05402	726	glycogen branching enzyme; Provisional	95.6
cd05815	101	CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP	95.19
PLN02316	1036	synthase/transferase	94.96
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	93.87
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	93.86
cd05806	112	CBM20_laforin Laforin protein tyrosine phosphatase	93.58
PF11806	122	DUF3327: Domain of unknown function (DUF3327); Int	92.57
PRK10439	411	enterobactin/ferric enterobactin esterase; Provisi	92.44
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	92.02
PLN02950	909	4-alpha-glucanotransferase	91.93
PLN02950	909	4-alpha-glucanotransferase	89.58
PLN02960	897	alpha-amylase	87.79
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	86.91
PRK03705	658	glycogen debranching enzyme; Provisional	86.31
cd02857	116	CD_pullulan_degrading_enzymes_N_term CD and pullul	85.53
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	84.53

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.90  E-value=5.5e-24  Score=169.43  Aligned_cols=77  Identities=35%  Similarity=0.696  Sum_probs=71.3

Q ss_pred             eEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcCEeeeCCCCCeec
Q 015355          317 EVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT  396 (408)
Q Consensus       317 r~VTFtW~g~AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDGeW~~DPd~Ptvt  396 (408)
                      .+|+|+|.++|++|+|+|+|++|++.++|.+.            ..+ |++++.||||.|+|||+|||.|.+||+.|++.
T Consensus         2 ~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~   68 (79)
T cd02859           2 VPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTET   68 (79)
T ss_pred             eEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccC
Confidence            68999999999999999999999988999985            234 99999999999999999999999999999998


Q ss_pred             C-CCccceEEE
Q 015355          397 K-GGICNNILR  406 (408)
Q Consensus       397 D-~GnvNNVLe  406 (408)
                      | +|+.||+|+
T Consensus        69 d~~G~~NN~i~   79 (79)
T cd02859          69 DDEGNVNNVID   79 (79)
T ss_pred             CCCCcEeeeEC
Confidence            7 799999984

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=99.76  E-value=1.8e-18  Score=137.28  Aligned_cols=77  Identities=39%  Similarity=0.689  Sum_probs=68.3

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcCEee-eCCCCCe
Q 015355          317 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRES  394 (408)
Q Consensus       317 r~VTFtW~g~-AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDGeW~-~DPd~Pt  394 (408)
                      .+|+|+|.++ ++.|+|+|+|++|+ .++|+++            ..|.|++++.|+||.|+|||+|||.|. +||.++.
T Consensus         2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~------------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~   68 (82)
T cd02861           2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE------------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAA   68 (82)
T ss_pred             ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC------------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCc
Confidence            4799999998 69999999999998 5789874            569999999999999999999999998 9999997


Q ss_pred             ec-C-CCccceEEE
Q 015355          395 VT-K-GGICNNILR  406 (408)
Q Consensus       395 vt-D-~GnvNNVLe  406 (408)
                      .. + .|+.|+||.
T Consensus        69 ~~~~~~g~~n~v~~   82 (82)
T cd02861          69 YVDDGFGGKNAVFV   82 (82)
T ss_pred             eecCCCCccceEcC
Confidence            66 4 588999873

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=99.60  E-value=1.3e-15  Score=148.07  Aligned_cols=83  Identities=39%  Similarity=0.567  Sum_probs=75.2

Q ss_pred             ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcCEeeeCCCCCee
Q 015355          316 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV  395 (408)
Q Consensus       316 Lr~VTFtW~g~AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDGeW~~DPd~Ptv  395 (408)
                      -.+++|+|.++++.|+|.|+|++|...++|.+..          +..|.|++++.|++|.|+|||+|||+|.+|++.|++
T Consensus        79 ~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~----------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta  148 (289)
T KOG1616|consen   79 GRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG----------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTA  148 (289)
T ss_pred             CCceEEEecCCCceEEEecccccccccccceecC----------CCcccceeeEecCCceEEEEEecCCceecCCCCccc
Confidence            3689999999999999999999999989998741          234559999999999999999999999999999999


Q ss_pred             cC-CCccceEEEeC
Q 015355          396 TK-GGICNNILRVI  408 (408)
Q Consensus       396 tD-~GnvNNVLeVe  408 (408)
                      ++ .|+.||+|.|.
T Consensus       149 ~d~~Gn~~N~i~v~  162 (289)
T KOG1616|consen  149 EDSLGNLNNILEVQ  162 (289)
T ss_pred             ccccCCcccceEec
Confidence            98 79999999984

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=99.21  E-value=7.3e-11  Score=95.10  Aligned_cols=77  Identities=25%  Similarity=0.368  Sum_probs=64.1

Q ss_pred             ceEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEE-EeCCceEEEEEEEcCEeeeCCCCC
Q 015355          316 LEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQWKVDPQRE  393 (408)
Q Consensus       316 Lr~VTFtW~g~-AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL-~LPPGrYEYKFIVDGeW~~DPd~P  393 (408)
                      ...|+|+..++ |++|.|.|+|++|.. .+|+++            ..|.|++++ .|.+|.|.|+|+|||.|+.||.++
T Consensus         5 ~~~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~------------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~   71 (85)
T cd02858           5 DRTVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD------------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNP   71 (85)
T ss_pred             CCcEEEEEECCCCCEEEEEeecCCCcc-EeCeEC------------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCC
Confidence            35789987665 999999999998864 789885            579999998 488899999999999999999999


Q ss_pred             eec-CCCccceEE
Q 015355          394 SVT-KGGICNNIL  405 (408)
Q Consensus       394 tvt-D~GnvNNVL  405 (408)
                      ... +.+..-|.+
T Consensus        72 ~~~~~~~~~~~~~   84 (85)
T cd02858          72 TTKPGRQVDTSGV   84 (85)
T ss_pred             ceeecccccceee
Confidence            988 455554543

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=98.85  E-value=1.3e-08  Score=76.97  Aligned_cols=70  Identities=30%  Similarity=0.478  Sum_probs=60.1

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCC-ceEEEEEEEcCEeeeCCCCCe
Q 015355          317 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRES  394 (408)
Q Consensus       317 r~VTFtW~g~-AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPP-GrYEYKFIVDGeW~~DPd~Pt  394 (408)
                      ..|+|++.++ ++.|.|.+.|++|...++|.+.            ..|.|.+.+.+.+ |.|.|+|+|||.|.+++.++.
T Consensus         4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~------------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~   71 (83)
T cd02688           4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV------------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPK   71 (83)
T ss_pred             ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC------------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChh
Confidence            4689988876 8999999999997667889874            5699999999987 999999999999999998866


Q ss_pred             ecCC
Q 015355          395 VTKG  398 (408)
Q Consensus       395 vtD~  398 (408)
                      ..+.
T Consensus        72 ~~~~   75 (83)
T cd02688          72 ADEG   75 (83)
T ss_pred             hhcC
Confidence            6653

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain

Probab=98.39  E-value=1.2e-06  Score=73.39  Aligned_cols=68  Identities=19%  Similarity=0.379  Sum_probs=52.3

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEEe--------CCc-eEEEEEEE-cC
Q 015355          317 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL--------YPG-TYEIKFIV-DG  384 (408)
Q Consensus       317 r~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~L--------PPG-rYEYKFIV-DG  384 (408)
                      ..++|+..++ |+.|+|.|+||+|+.. .+|.+.            ..|+|++.+..        +.| .|.|.+.. ||
T Consensus         5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~------------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G   72 (99)
T cd02854           5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD------------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG   72 (99)
T ss_pred             CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC------------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence            4678876665 9999999999999864 679874            58999999864        455 56666666 78


Q ss_pred             Ee--eeCCCCCeec
Q 015355          385 QW--KVDPQRESVT  396 (408)
Q Consensus       385 eW--~~DPd~Ptvt  396 (408)
                      +|  +.||-...+.
T Consensus        73 ~~~~~~DPyA~~~~   86 (99)
T cd02854          73 EWIDRIPAWIKYVT   86 (99)
T ss_pred             CEEEEcCcceeEEE
Confidence            87  5788777655

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi

>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3

Probab=98.33  E-value=5.9e-07  Score=70.34  Aligned_cols=59  Identities=27%  Similarity=0.435  Sum_probs=46.4

Q ss_pred             eEEEEEEecC-CceEEEEeeeCC-Cccc-cccCCCCCCCccccccccCCCeEEEEEE--eCCceEEEEEEEcCEe
Q 015355          317 EVVEIQYSGD-GEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQW  386 (408)
Q Consensus       317 r~VTFtW~g~-AkeV~VaGSFNN-W~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~--LPPGrYEYKFIVDGeW  386 (408)
                      ..++|+..++ |+.|.|.+.|++ |... ++|++.           ...|+|++++.  +++|.+.|+|.|||..
T Consensus        11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-----------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~   74 (85)
T PF02922_consen   11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-----------DDDGVWEVTVPGDLPPGGYYYKYRIDGDD   74 (85)
T ss_dssp             TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-----------CTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred             CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-----------CCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence            5789976665 999999999999 8754 789831           36899999998  8889888888887553

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....

>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.72  E-value=0.00019  Score=57.71  Aligned_cols=66  Identities=26%  Similarity=0.536  Sum_probs=48.0

Q ss_pred             EEEEEEec---CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---cC-
Q 015355          318 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG-  384 (408)
Q Consensus       318 ~VTFtW~g---~AkeV~VaGS---FNNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---DG-  384 (408)
                      +|+|....   .|+.|+|+|+   +.+|++.  ++|...            ..+.|.+++.||+| .++|||++   +| 
T Consensus         2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~------------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~   69 (95)
T cd05808           2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA------------TYPVWSGTVDLPAGTAIEYKYIKKDGSGT   69 (95)
T ss_pred             eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC------------CCCCEEEEEEeCCCCeEEEEEEEECCCCc
Confidence            45665543   4899999995   6899854  678753            46789999999987 79999996   24 


Q ss_pred             -EeeeCCCCCee
Q 015355          385 -QWKVDPQRESV  395 (408)
Q Consensus       385 -eW~~DPd~Ptv  395 (408)
                       .|...++.-..
T Consensus        70 ~~WE~~~nr~~~   81 (95)
T cd05808          70 VTWESGPNRTAT   81 (95)
T ss_pred             EEEecCCCEEEE
Confidence             47666643333

This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo

>cd02860 Pullulanase_N_term Pullulanase domain N-terminus

Probab=97.68  E-value=0.00017  Score=59.11  Aligned_cols=68  Identities=18%  Similarity=0.239  Sum_probs=52.3

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCE-----
Q 015355          318 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----  385 (408)
Q Consensus       318 ~VTFtW~g~-AkeV~VaGSFNNW~-----~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGe-----  385 (408)
                      .++|+..++ |++|.|.. |++|.     ..++|.+.            ..|+|++.+. +.+|.+ |+|.|+|.     
T Consensus         9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~   74 (100)
T cd02860           9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRG------------ENGVWSVTLDGDLEGYY-YLYEVKVYKGETN   74 (100)
T ss_pred             CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecC------------CCCEEEEEeCCccCCcE-EEEEEEEeceEEE
Confidence            478876665 99999987 88886     34678763            6899999986 566654 88888876     


Q ss_pred             eeeCCCCCeecCCC
Q 015355          386 WKVDPQRESVTKGG  399 (408)
Q Consensus       386 W~~DPd~PtvtD~G  399 (408)
                      ...||-...+...|
T Consensus        75 ~~~DPyA~~~~~~~   88 (100)
T cd02860          75 EVVDPYAKALSANG   88 (100)
T ss_pred             EEcCcccEeEeeCC
Confidence            68899888877544

Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain

Probab=97.52  E-value=0.00069  Score=54.67  Aligned_cols=77  Identities=26%  Similarity=0.365  Sum_probs=50.7

Q ss_pred             EEEEEEec-CCceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCeEEEEEE-eCCc-eEEEEEEEc-CEe--eeCC
Q 015355          318 VVEIQYSG-DGEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVDP  390 (408)
Q Consensus       318 ~VTFtW~g-~AkeV~VaGSFNNW~~-~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPG-rYEYKFIVD-GeW--~~DP  390 (408)
                      .++|+... .|+.|.|.++|++|.. .++|.++           ...|.|.+.+. +++| .|.|++..+ |.|  +.||
T Consensus        22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-----------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DP   90 (106)
T cd02855          22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-----------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADP   90 (106)
T ss_pred             CEEEEEECCCCCEEEEEEECCCCCCcceecEEC-----------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCC
Confidence            47786555 5999999999999964 3678764           24899999886 6666 444444444 333  5577


Q ss_pred             CCCeecCCCccceEE
Q 015355          391 QRESVTKGGICNNIL  405 (408)
Q Consensus       391 d~PtvtD~GnvNNVL  405 (408)
                      -..-++.....++|+
T Consensus        91 Ya~~~~~~~~~~~~~  105 (106)
T cd02855          91 YAFYSELRPGTASIV  105 (106)
T ss_pred             CceeeEeCCCCeEEe
Confidence            766555443355553

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina

>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3

Probab=97.51  E-value=0.00047  Score=56.19  Aligned_cols=58  Identities=22%  Similarity=0.435  Sum_probs=45.1

Q ss_pred             eEEEEEEec---CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE
Q 015355          317 EVVEIQYSG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  382 (408)
Q Consensus       317 r~VTFtW~g---~AkeV~VaGSFN---NW~~--~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV  382 (408)
                      ..|+|....   .++.|+|+|+..   +|++  .++|.....        ......|++++.||.| .++|||+|
T Consensus         2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~--------~~~~~~W~~~v~lp~~~~~eYKy~i   68 (96)
T PF00686_consen    2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEG--------TENYPIWSATVDLPAGTPFEYKYVI   68 (96)
T ss_dssp             EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESS--------SSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccC--------CCCCCeEEEEEECcCCCEEEEEEEE
Confidence            467887744   489999999996   8997  478876310        1245799999999988 79999998

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=97.37  E-value=0.0003  Score=75.95  Aligned_cols=68  Identities=25%  Similarity=0.451  Sum_probs=52.5

Q ss_pred             CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCE-----e
Q 015355          315 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----W  386 (408)
Q Consensus       315 gLr~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGe-----W  386 (408)
                      |...|+|+..++ +..|.|.|+||+|... .+|...           +..|.|.++++ +++| +.|||.|++.     +
T Consensus        34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-----------~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~  101 (628)
T COG0296          34 GVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-----------KESGIWELFVPGAPPG-TRYKYELIDPSGQLRL  101 (628)
T ss_pred             CCCceEEEEECCCCCeEEEEeecCCccceecccccC-----------CCCceEEEeccCCCCC-CeEEEEEeCCCCceee
Confidence            566899976555 9999999999999873 344432           36799999999 9999 9999998754     3


Q ss_pred             eeCCCCCe
Q 015355          387 KVDPQRES  394 (408)
Q Consensus       387 ~~DPd~Pt  394 (408)
                      +.||-.-.
T Consensus       102 ~~DP~a~~  109 (628)
T COG0296         102 KADPYARR  109 (628)
T ss_pred             ccCchhhc
Confidence            67775433

>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.29  E-value=0.0017  Score=55.47  Aligned_cols=55  Identities=24%  Similarity=0.558  Sum_probs=43.2

Q ss_pred             EEEEEEec----CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE
Q 015355          318 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  382 (408)
Q Consensus       318 ~VTFtW~g----~AkeV~VaGS---FNNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV  382 (408)
                      .|+|....    .++.|+|+|+   +.+|+..  ++|....          ...+.|.+.+.||++ .++|||++
T Consensus         2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~----------~~~~~W~~~v~lp~~~~veYkY~~   66 (120)
T cd05814           2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED----------DDCNLWKASIELPRGVDFQYRYFV   66 (120)
T ss_pred             eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC----------CcCCccEEEEEECCCCeEEEEEEE
Confidence            46666655    3899999999   7899853  6787531          145789999999998 89999999

Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.26  E-value=0.0021  Score=52.84  Aligned_cols=67  Identities=27%  Similarity=0.447  Sum_probs=50.0

Q ss_pred             eEEEEEEec---CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---cC--
Q 015355          317 EVVEIQYSG---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG--  384 (408)
Q Consensus       317 r~VTFtW~g---~AkeV~VaGSF---NNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---DG--  384 (408)
                      ..|+|..+.   .|+.++|+|+-   .+|++..+|..             ..+.|.+.+.+|+| .++|||++   ||  
T Consensus         2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~-------------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v   68 (92)
T cd05818           2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW-------------TENGWVCDLELDGGELVEYKFVIVKRDGSV   68 (92)
T ss_pred             EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc-------------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCE
Confidence            356666654   38999999988   59997777764             24569999999988 79999998   44  


Q ss_pred             EeeeCCCCCeec
Q 015355          385 QWKVDPQRESVT  396 (408)
Q Consensus       385 eW~~DPd~Ptvt  396 (408)
                      .|...++.-...
T Consensus        69 ~WE~g~Nr~~~~   80 (92)
T cd05818          69 IWEGGNNRVLEL   80 (92)
T ss_pred             EEEeCCCEEEEc
Confidence            487766654433

This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>PRK12313 glycogen branching enzyme; Provisional

Probab=97.22  E-value=0.0011  Score=70.55  Aligned_cols=68  Identities=22%  Similarity=0.329  Sum_probs=50.2

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-eCCc-eEEEEEEE-cCEe--eeC
Q 015355          317 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KVD  389 (408)
Q Consensus       317 r~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPG-rYEYKFIV-DGeW--~~D  389 (408)
                      ..|+|+...+ |+.|+|.|+|++|... .+|.+.            ..|+|.+.+. +.+| .|.|++.+ ||.|  +.|
T Consensus        38 ~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~------------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D  105 (633)
T PRK12313         38 KGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR------------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKID  105 (633)
T ss_pred             ccEEEEEECCCCCEEEEEEecCCCCccccccccc------------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCC
Confidence            4789987666 9999999999999865 678763            5799999997 4555 66666654 5775  456


Q ss_pred             CCCCeec
Q 015355          390 PQRESVT  396 (408)
Q Consensus       390 Pd~Ptvt  396 (408)
                      |-...+.
T Consensus       106 Pya~~~~  112 (633)
T PRK12313        106 PFAFYFE  112 (633)
T ss_pred             CceEEEe
Confidence            6655443

>PRK12568 glycogen branching enzyme; Provisional

Probab=97.12  E-value=0.0018  Score=71.23  Aligned_cols=69  Identities=28%  Similarity=0.457  Sum_probs=52.5

Q ss_pred             CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEE---cCEe--
Q 015355          315 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQW--  386 (408)
Q Consensus       315 gLr~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIV---DGeW--  386 (408)
                      |..-|+|+..++ |+.|.|.|+||+|... .+|.+.            ..|+|++.++ +.+| ..|||.|   ||.+  
T Consensus       136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~------------~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~  202 (730)
T PRK12568        136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR------------IGGFWELFLPRVEAG-ARYKYAITAADGRVLL  202 (730)
T ss_pred             CCCcEEEEEECCCCCEEEEEEecCCCCccceecccC------------CCCEEEEEECCCCCC-CEEEEEEEcCCCeEee
Confidence            445789976665 9999999999999864 688763            6899999985 6777 3577777   7876  


Q ss_pred             eeCCCCCeec
Q 015355          387 KVDPQRESVT  396 (408)
Q Consensus       387 ~~DPd~Ptvt  396 (408)
                      +.||-.....
T Consensus       203 k~DPYA~~~e  212 (730)
T PRK12568        203 KADPVARQTE  212 (730)
T ss_pred             cCCCcceEee
Confidence            4688766544

>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain

Probab=97.12  E-value=0.0022  Score=53.04  Aligned_cols=65  Identities=17%  Similarity=0.293  Sum_probs=47.7

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcC---------
Q 015355          318 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---------  384 (408)
Q Consensus       318 ~VTFtW~g~-AkeV~VaGSFNNW~--~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDG---------  384 (408)
                      .++|+..++ |+.|.|.. |++|.  ..++|+++            ..|+|.+.+. +.+|. .|+|.|||         
T Consensus        10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~GvW~~~v~~~~~g~-~Y~y~i~g~~~p~~~~~   75 (103)
T cd02856          10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE------------YGGVWHGFLPGIKAGQ-RYGFRVHGPYDPERGLR   75 (103)
T ss_pred             CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc------------cCCEEEEEECCCCCCC-EEEEEECCccCcccCcc
Confidence            477876665 99999988 66664  34688763            5799999984 66765 79999999         


Q ss_pred             ----EeeeCCCCCeec
Q 015355          385 ----QWKVDPQRESVT  396 (408)
Q Consensus       385 ----eW~~DPd~Ptvt  396 (408)
                          ....||-...+.
T Consensus        76 ~~~~~~~~DPYA~~~~   91 (103)
T cd02856          76 FNPAKLLLDPYARALD   91 (103)
T ss_pred             cCCCeEEecCCcceEc
Confidence                455666655544

Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.02  E-value=0.0047  Score=51.16  Aligned_cols=71  Identities=23%  Similarity=0.335  Sum_probs=48.8

Q ss_pred             ceEEEEEEec----CCceEEEEe---eeCCCcccc-ccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---c
Q 015355          316 LEVVEIQYSG----DGEIVEVAG---SFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D  383 (408)
Q Consensus       316 Lr~VTFtW~g----~AkeV~VaG---SFNNW~~~I-pM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---D  383 (408)
                      ..+|+|....    .++.|+|+|   .+.+|+... +|..-.         ....+.|.+.+.||+| .++|||++   |
T Consensus         2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~---------~~~~~~W~~~~~lp~~~~veyKyv~~~~~   72 (99)
T cd05809           2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYY---------NSHSNDWRGTVHLPAGRNIEFKAIKKSKD   72 (99)
T ss_pred             ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhcccc---------CCCCCCEEEEEEecCCCcEEEEEEEEcCC
Confidence            3678888743    389999999   557998641 232210         0245789999999999 79999999   4


Q ss_pred             C---EeeeCCCCCee
Q 015355          384 G---QWKVDPQRESV  395 (408)
Q Consensus       384 G---eW~~DPd~Ptv  395 (408)
                      |   .|...++.-..
T Consensus        73 ~~~~~WE~g~nr~~~   87 (99)
T cd05809          73 GTNKSWQGGQQSWYP   87 (99)
T ss_pred             CCeeEEecCCCeeEE
Confidence            4   27666654433

Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1

>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.99  E-value=0.0075  Score=50.47  Aligned_cols=69  Identities=23%  Similarity=0.345  Sum_probs=51.5

Q ss_pred             eEEEEEEec-----CCceEEEEeeeC---CCcccc-----ccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE
Q 015355          317 EVVEIQYSG-----DGEIVEVAGSFN---GWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  382 (408)
Q Consensus       317 r~VTFtW~g-----~AkeV~VaGSFN---NW~~~I-----pM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV  382 (408)
                      .+|+|....     .|+.|+|+|+-.   +|+...     +|..            .....|.+.+.||.| ..+|||++
T Consensus         3 ~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~------------~~~~~W~~~~~lp~~~~veyK~v~   70 (103)
T cd05820           3 IPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC------------PNWPDWFVVASVPAGTYIEFKFLK   70 (103)
T ss_pred             ccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc------------CCCCCEEEEEEcCCCCcEEEEEEE
Confidence            678998863     379999999874   998632     5543            245689999999999 79999998


Q ss_pred             ---cCE--eeeCCCCCeecC
Q 015355          383 ---DGQ--WKVDPQRESVTK  397 (408)
Q Consensus       383 ---DGe--W~~DPd~PtvtD  397 (408)
                         ||.  |...++.-....
T Consensus        71 ~~~~g~v~WE~g~Nr~~~~p   90 (103)
T cd05820          71 APADGTGTWEGGSNHAYTTP   90 (103)
T ss_pred             ECCCCCEEEEeCCCEeEECC
Confidence               553  877776555444

Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco

>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.90  E-value=0.0088  Score=49.47  Aligned_cols=74  Identities=28%  Similarity=0.563  Sum_probs=50.5

Q ss_pred             ceEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---c
Q 015355          316 LEVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D  383 (408)
Q Consensus       316 Lr~VTFtW~g---~AkeV~VaGSF---NNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---D  383 (408)
                      .++|+|....   .|+.|+|+|+.   .+|+..  ++|....        .....+.|.+.+.||+| .++|||+|   |
T Consensus         6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~--------~t~~~~~W~~~v~lp~~~~veYKy~~~~~~   77 (106)
T cd05811           6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQ--------YTSSNPLWSVTIPLPAGTSFEYKFIRKESD   77 (106)
T ss_pred             EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCccccccc--------CccCCCcEEEEEEeCCCCcEEEEEEEEcCC
Confidence            3567787654   38999999987   489863  6776420        00134689999999988 59999996   2


Q ss_pred             C--EeeeCCCCCeecC
Q 015355          384 G--QWKVDPQRESVTK  397 (408)
Q Consensus       384 G--eW~~DPd~PtvtD  397 (408)
                      |  .|...++.-....
T Consensus        78 ~~~~WE~~~nr~~~~~   93 (106)
T cd05811          78 GSVTWESDPNRSYTVP   93 (106)
T ss_pred             CcEEEecCCCeEEECC
Confidence            3  3877665444333

Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also

>PRK14706 glycogen branching enzyme; Provisional

Probab=96.89  E-value=0.0032  Score=68.06  Aligned_cols=67  Identities=31%  Similarity=0.451  Sum_probs=50.1

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcC---Ee--ee
Q 015355          317 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---QW--KV  388 (408)
Q Consensus       317 r~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDG---eW--~~  388 (408)
                      .-|+|+..++ |++|.|.|+||+|... .+|.+.            ..|+|.+.+. +.+| ..|||.|+|   .+  +.
T Consensus        38 ~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~------------~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~  104 (639)
T PRK14706         38 EGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL------------DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKM  104 (639)
T ss_pred             ccEEEEEECCCCCEEEEEEecCCccccccccccc------------CCCEEEEEECCCCCC-CEEEEEEECCCCCEEecc
Confidence            4588976665 9999999999999864 689864            4699999986 4555 468888864   44  67


Q ss_pred             CCCCCeec
Q 015355          389 DPQRESVT  396 (408)
Q Consensus       389 DPd~Ptvt  396 (408)
                      ||-.....
T Consensus       105 DPYa~~~~  112 (639)
T PRK14706        105 DPYGSFFE  112 (639)
T ss_pred             CcceEEEe
Confidence            87766544

>cd02852 Isoamylase_N_term Isoamylase N-terminus domain

Probab=96.87  E-value=0.0038  Score=52.59  Aligned_cols=58  Identities=26%  Similarity=0.427  Sum_probs=42.5

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc---c--ccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCEe
Q 015355          318 VVEIQYSGD-GEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW  386 (408)
Q Consensus       318 ~VTFtW~g~-AkeV~VaGSFNNW~---~--~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGeW  386 (408)
                      .++|+..++ |+.|.|.. |++|.   +  .++|.++.         .+..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus         8 g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~---------~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~   72 (119)
T cd02852           8 GVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSV---------NRTGDVWHVFVEGLKPGQ-LYGYRVDGPF   72 (119)
T ss_pred             CEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcc---------cccCCEEEEEECCCCCCC-EEEEEECCCC
Confidence            478876665 99999998 88886   2  35676531         134699999985 67886 6999999854

Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PRK14705 glycogen branching enzyme; Provisional

Probab=96.82  E-value=0.0043  Score=71.60  Aligned_cols=67  Identities=33%  Similarity=0.574  Sum_probs=49.9

Q ss_pred             CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEc---CEe--
Q 015355          315 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQW--  386 (408)
Q Consensus       315 gLr~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVD---GeW--  386 (408)
                      |..-|.|+..++ |+.|.|.|+||+|... .+|.+.           ...|+|++.++ +.+|. .|||.|+   |.|  
T Consensus       636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-----------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~  703 (1224)
T PRK14705        636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-----------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVE  703 (1224)
T ss_pred             CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC-----------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEe
Confidence            455788965555 9999999999999865 578763           25799999885 78885 5888884   555  


Q ss_pred             eeCCCCC
Q 015355          387 KVDPQRE  393 (408)
Q Consensus       387 ~~DPd~P  393 (408)
                      +.||-..
T Consensus       704 k~DPyA~  710 (1224)
T PRK14705        704 KADPLAF  710 (1224)
T ss_pred             cCCcccc
Confidence            5577553

>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain

Probab=96.71  E-value=0.0087  Score=47.88  Aligned_cols=73  Identities=14%  Similarity=0.043  Sum_probs=50.4

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEc-CEeeeCCCCCe
Q 015355          317 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD-GQWKVDPQRES  394 (408)
Q Consensus       317 r~VTFtW~g~-AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVD-GeW~~DPd~Pt  394 (408)
                      ..++|+..++ |++|.|....  |. .++|.+.            ..|.|++.+..-+|. .|+|.|+ |..+.||....
T Consensus         8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~------------~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~   71 (85)
T cd02853           8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD------------GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF   71 (85)
T ss_pred             CCEEEEEeCCCCCEEEEEecC--CC-cccCccC------------CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence            3578876665 9999999643  43 4789864            679999998633775 4777776 56889999887


Q ss_pred             ecCCCccceEE
Q 015355          395 VTKGGICNNIL  405 (408)
Q Consensus       395 vtD~GnvNNVL  405 (408)
                      ...+.+-++++
T Consensus        72 ~~~~~~~~s~v   82 (85)
T cd02853          72 QPEGVHGPSQV   82 (85)
T ss_pred             CCCCCCCCeEe
Confidence            55432224443

MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.64  E-value=0.0071  Score=65.80  Aligned_cols=69  Identities=28%  Similarity=0.452  Sum_probs=49.8

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-eCCc-eEEEEEEEc-CEe--eeC
Q 015355          317 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVD  389 (408)
Q Consensus       317 r~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPG-rYEYKFIVD-GeW--~~D  389 (408)
                      ..|+|+...+ |++|.|.|+||+|... .+|.+.           ...|+|.+.+. +++| .|.|++..+ |.|  ..|
T Consensus       131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D  199 (726)
T PRK05402        131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-----------GESGVWELFIPGLGEGELYKFEILTADGELLLKAD  199 (726)
T ss_pred             CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc-----------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCC
Confidence            3588986666 9999999999999764 578764           25799999885 6677 677776654 455  456


Q ss_pred             CCCCeec
Q 015355          390 PQRESVT  396 (408)
Q Consensus       390 Pd~Ptvt  396 (408)
                      |-.-.+.
T Consensus       200 PYa~~~~  206 (726)
T PRK05402        200 PYAFAAE  206 (726)
T ss_pred             CceEEEe
Confidence            6554433

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=96.61  E-value=0.0042  Score=68.62  Aligned_cols=63  Identities=16%  Similarity=0.303  Sum_probs=46.2

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-------eCCceEEEEEEEc---CE
Q 015355          318 VVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ  385 (408)
Q Consensus       318 ~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-------LPPGrYEYKFIVD---Ge  385 (408)
                      .++|+..+| |++|+|.|+||+|... .+|++.            ..|+|++.++       ++.|. .|||.|.   |.
T Consensus       115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~------------~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~  181 (758)
T PLN02447        115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN------------EFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGR  181 (758)
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCCCccCceeC------------CCCEEEEEECCccccccCCCCC-EEEEEEEeCCCc
Confidence            578865554 9999999999999864 689874            5799999986       34453 6777774   54


Q ss_pred             --eeeCCCCC
Q 015355          386 --WKVDPQRE  393 (408)
Q Consensus       386 --W~~DPd~P  393 (408)
                        .+.||-..
T Consensus       182 ~~~r~dpya~  191 (758)
T PLN02447        182 WVDRIPAWIK  191 (758)
T ss_pred             EEeecCchHh
Confidence              45677544

>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.60  E-value=0.0079  Score=49.90  Aligned_cols=45  Identities=24%  Similarity=0.428  Sum_probs=36.7

Q ss_pred             CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE
Q 015355          326 DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  382 (408)
Q Consensus       326 ~AkeV~VaGSF---NNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV  382 (408)
                      .|+.|+|+|+-   .+|+..  ++|...            ....|++.+.+|+| .++|||+|
T Consensus        12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~------------~~~~W~~~v~lp~~~~veYKY~i   62 (100)
T cd05817          12 FGEAVYISGNCNQLGNWNPSKAKRMQWN------------EGDLWTVDVGIPESVYIEYKYFV   62 (100)
T ss_pred             CCCEEEEEeCcHHHCCCCccccCcccCC------------CCCCEEEEEEECCCCcEEEEEEE
Confidence            38999999995   689854  577642            45689999999988 69999998

This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase)

Probab=96.59  E-value=0.01  Score=47.42  Aligned_cols=46  Identities=26%  Similarity=0.525  Sum_probs=37.3

Q ss_pred             CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCeEEEEEEeCC--c-eEEEEEEE
Q 015355          326 DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP--G-TYEIKFIV  382 (408)
Q Consensus       326 ~AkeV~VaGSFN---NW~~--~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPP--G-rYEYKFIV  382 (408)
                      .|+.|+|+|+..   +|++  .++|...           ...+.|.+.+.+|+  | .++|||++
T Consensus        12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~-----------~~~~~W~~~v~~~~~~~~~~~yKy~~   65 (96)
T cd05467          12 FGQSVYVVGSHPELGNWDPAKALRLNTS-----------NSYPLWTGEIPLPAPEGQVIEYKYVI   65 (96)
T ss_pred             CCCEEEEEeCcHHhCCcChhcCccccCC-----------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence            489999999984   8985  3678753           12678999999999  7 79999998

CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.51  E-value=0.011  Score=48.27  Aligned_cols=53  Identities=28%  Similarity=0.511  Sum_probs=41.3

Q ss_pred             EEEEEEec----CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE
Q 015355          318 VVEIQYSG----DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  382 (408)
Q Consensus       318 ~VTFtW~g----~AkeV~VaGSF---NNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV  382 (408)
                      +|+|+...    +++.|+|+|+-   .+|+...+|...            ..+.|.+.+.||+| .++|||++
T Consensus         2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~------------~~~~W~~~v~lp~~~~ieYky~~   62 (95)
T cd05813           2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV------------KDGFWSASVSLPVDTHVEWKFVL   62 (95)
T ss_pred             eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC------------CCCCEEEEEEecCCCcEEEEEEE
Confidence            56666544    35778899987   489877888652            45689999999998 59999998

Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=96.50  E-value=0.0067  Score=64.06  Aligned_cols=70  Identities=14%  Similarity=0.116  Sum_probs=51.9

Q ss_pred             EEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcC-EeeeCCCCCee
Q 015355          319 VEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESV  395 (408)
Q Consensus       319 VTFtW~g~-AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDG-eW~~DPd~Ptv  395 (408)
                      |+|+..++ |++|.|.+   ++ ..++|.+.            ..|+|++++. +.+| +.|+|.||| .-+.||.....
T Consensus         1 v~FrlwAP~A~~V~L~l---~~-~~~~m~k~------------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~   63 (542)
T TIGR02402         1 VRFRLWAPTAASVKLRL---NG-ALHAMQRL------------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ   63 (542)
T ss_pred             CEEEEECCCCCEEEEEe---CC-CEEeCeEC------------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence            57876665 99999997   23 35789874            5799999996 7788 789999999 67889988876


Q ss_pred             cCCCccceEE
Q 015355          396 TKGGICNNIL  405 (408)
Q Consensus       396 tD~GnvNNVL  405 (408)
                      ..+.+..++|
T Consensus        64 ~~~~~~~S~V   73 (542)
T TIGR02402        64 PDGVHGPSQV   73 (542)
T ss_pred             ccCCCCCeEE
Confidence            5432223444

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2

Probab=96.49  E-value=0.034  Score=45.96  Aligned_cols=66  Identities=26%  Similarity=0.571  Sum_probs=47.3

Q ss_pred             EEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc--eEEEEEEE--c--
Q 015355          319 VEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--D--  383 (408)
Q Consensus       319 VTFtW~g----~AkeV~VaGSF---NNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG--rYEYKFIV--D--  383 (408)
                      |+|+...    .++.|+|+|+.   .+|++.  ++|...            ....|.+.+.+|++  .++|||++  +  
T Consensus         2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~~p~~~~~ieYKyvi~~~~~   69 (99)
T cd05816           2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDV------------GFPIWEADIDISKDSFPFEYKYIIANKDS   69 (99)
T ss_pred             EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCC------------CCCcEEEEEEeCCCCccEEEEEEEEeCCC
Confidence            5666544    48999999997   589853  678652            45689999999986  59999998  2  


Q ss_pred             C--EeeeCCCCCeec
Q 015355          384 G--QWKVDPQRESVT  396 (408)
Q Consensus       384 G--eW~~DPd~Ptvt  396 (408)
                      |  .|..-++.-...
T Consensus        70 ~~~~WE~g~nr~~~~   84 (99)
T cd05816          70 GVVSWENGPNRELSA   84 (99)
T ss_pred             CcEEEEcCCCeEEEC
Confidence            3  276665544433

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star

>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.29  E-value=0.042  Score=45.52  Aligned_cols=74  Identities=22%  Similarity=0.259  Sum_probs=49.9

Q ss_pred             ceEEEEEEec----CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---
Q 015355          316 LEVVEIQYSG----DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---  382 (408)
Q Consensus       316 Lr~VTFtW~g----~AkeV~VaGSFN---NW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---  382 (408)
                      .++|+|....    .|+.|+|+|+..   +|+..  +.|....        .......|.+.+.||.| .++|||++   
T Consensus         2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~--------~~~~~~~W~~~~~lp~~~~~eyK~~~~~~   73 (101)
T cd05807           2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQ--------VVYQYPNWYYDVSVPAGTTIEFKFIKKNG   73 (101)
T ss_pred             cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHcccccccc--------CCCcCCcEEEEEEcCCCCcEEEEEEEECC
Confidence            4678888742    389999999884   99864  2222110        01245689999999999 79999998   


Q ss_pred             cCE--eeeCCCCCeecC
Q 015355          383 DGQ--WKVDPQRESVTK  397 (408)
Q Consensus       383 DGe--W~~DPd~PtvtD  397 (408)
                      ||.  |...++.-....
T Consensus        74 ~~~~~WE~g~nr~~~~p   90 (101)
T cd05807          74 DNTVTWESGSNHTYTAP   90 (101)
T ss_pred             CCCEEEEeCCCEEEeCC
Confidence            353  766655544433

CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific

>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.14  E-value=0.038  Score=46.01  Aligned_cols=67  Identities=27%  Similarity=0.446  Sum_probs=47.5

Q ss_pred             EEEEEEe-c---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---cC
Q 015355          318 VVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG  384 (408)
Q Consensus       318 ~VTFtW~-g---~AkeV~VaGSFN---NW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---DG  384 (408)
                      +|+|... .   .++.|+|+|+..   +|+..  ++|...            ....|.+.+.||.| ..+|||++   +|
T Consensus         2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~lp~~~~veyKyv~~~~~~   69 (97)
T cd05810           2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT------------AYPTWSGSISLPASTNVEWKCLKRNETN   69 (97)
T ss_pred             eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC------------CCCeEEEEEEcCCCCeEEEEEEEEcCCC
Confidence            4566533 2   489999999885   99853  566542            45689999999998 79999998   22


Q ss_pred             -----EeeeCCCCCeec
Q 015355          385 -----QWKVDPQRESVT  396 (408)
Q Consensus       385 -----eW~~DPd~Ptvt  396 (408)
                           .|...++.-...
T Consensus        70 ~~~~v~WE~g~Nr~~~~   86 (97)
T cd05810          70 PTAGVQWQGGGNNQLTT   86 (97)
T ss_pred             CcceEEEeeCCCEEEeC
Confidence                 476666654433

Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=96.03  E-value=0.023  Score=60.87  Aligned_cols=68  Identities=24%  Similarity=0.324  Sum_probs=49.9

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEc---CE--eee
Q 015355          317 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKV  388 (408)
Q Consensus       317 r~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVD---Ge--W~~  388 (408)
                      ..++|+...| |+.|.|.|+||+|... .+|.+.           ...|+|++.+. ..+|. .|+|.|+   |.  ++.
T Consensus        28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~   95 (613)
T TIGR01515        28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-----------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKA   95 (613)
T ss_pred             CcEEEEEECCCCCEEEEEEecCCCCCceecceEe-----------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeC
Confidence            4678876555 9999999999999764 578763           24799999886 45665 5888884   55  477


Q ss_pred             CCCCCeec
Q 015355          389 DPQRESVT  396 (408)
Q Consensus       389 DPd~Ptvt  396 (408)
                      ||-.....
T Consensus        96 DPYA~~~~  103 (613)
T TIGR01515        96 DPYAFYAE  103 (613)
T ss_pred             CCCEeeec
Confidence            88776544

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>PLN02316 synthase/transferase

Probab=95.67  E-value=0.12  Score=59.39  Aligned_cols=64  Identities=13%  Similarity=0.357  Sum_probs=45.9

Q ss_pred             CCceEEEEEEec------CCceEEEEeeeCCCccccc--cCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEE-cC
Q 015355          314 SGLEVVEIQYSG------DGEIVEVAGSFNGWHHRIK--MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG  384 (408)
Q Consensus       314 sgLr~VTFtW~g------~AkeV~VaGSFNNW~~~Ip--M~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIV-DG  384 (408)
                      ..-.+|++.|+.      +..+|+|.|.||+|.....  +...       +...+.++.|.+++.+|+.-|-.-|+. ||
T Consensus       326 ~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~-------~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg  398 (1036)
T PLN02316        326 KAGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLV-------KSEEKDGDWWYAEVVVPERALVLDWVFADG  398 (1036)
T ss_pred             CCCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceee-------cccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence            334689999973      3689999999999997421  1111       011124558999999999999999996 66

>PRK05402 glycogen branching enzyme; Provisional

Probab=95.60  E-value=0.028  Score=61.37  Aligned_cols=63  Identities=21%  Similarity=0.104  Sum_probs=45.6

Q ss_pred             EEEEE-EecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEE--cCE--eeeCCCC
Q 015355          318 VVEIQ-YSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ--WKVDPQR  392 (408)
Q Consensus       318 ~VTFt-W~g~AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIV--DGe--W~~DPd~  392 (408)
                      -++|+ |...|++|.|.|+||+ ....+|.+.           ...|+|++.+++..|.. |||.|  ||+  .+.||-.
T Consensus        29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-----------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya   95 (726)
T PRK05402         29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-----------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR   95 (726)
T ss_pred             cEEEEEECCCCeEEEEEeecCC-CccccceEc-----------CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence            45675 5556999999999996 344688863           35799999999777743 55555  886  4668765


Q ss_pred             C
Q 015355          393 E  393 (408)
Q Consensus       393 P  393 (408)
                      -
T Consensus        96 f   96 (726)
T PRK05402         96 F   96 (726)
T ss_pred             c
Confidence            3

>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1

Probab=95.19  E-value=0.067  Score=44.09  Aligned_cols=55  Identities=20%  Similarity=0.483  Sum_probs=39.3

Q ss_pred             EEEEEe--cC-CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE
Q 015355          319 VEIQYS--GD-GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  382 (408)
Q Consensus       319 VTFtW~--g~-AkeV~VaGSF---NNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV  382 (408)
                      |+|...  .. |+.|+|+|+-   .+|+..  ++|....         ......|.+.+.+|++ .++|||+|
T Consensus         2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~---------~~~~~~W~~~v~~~~~~~veYky~v   65 (101)
T cd05815           2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSH---------QGDVLVWSGSISVPPGFSSEYNYYV   65 (101)
T ss_pred             EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecC---------CCCCCEEEEEEEeCCCCcEEEEEEE
Confidence            455544  33 8999999987   589753  6675310         0133489999999988 69999999

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol

>PLN02316 synthase/transferase

Probab=94.96  E-value=0.083  Score=60.53  Aligned_cols=57  Identities=26%  Similarity=0.423  Sum_probs=44.4

Q ss_pred             CceEEEEEEecC------CceEEEEeeeCCCcccc------ccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEE
Q 015355          315 GLEVVEIQYSGD------GEIVEVAGSFNGWHHRI------KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV  382 (408)
Q Consensus       315 gLr~VTFtW~g~------AkeV~VaGSFNNW~~~I------pM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIV  382 (408)
                      .-.+|++-|+..      ..+|++.|+||.|.+..      .|.+.           ..++.|.+++.+|..-|-..|+-
T Consensus       489 aG~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~-----------~~g~~~~a~v~vP~da~~mdfvF  557 (1036)
T PLN02316        489 AGTTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPA-----------DNGSHLKATVKVPLDAYMMDFVF  557 (1036)
T ss_pred             CCCEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeec-----------CCCceEEEEEEccccceEEEEEE
Confidence            346899999763      68899999999998752      25443           23356799999999999999987

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=93.87  E-value=0.17  Score=41.62  Aligned_cols=63  Identities=24%  Similarity=0.577  Sum_probs=38.6

Q ss_pred             EEEEEEec------CCceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEE-cC--Ee
Q 015355          318 VVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG--QW  386 (408)
Q Consensus       318 ~VTFtW~g------~AkeV~VaGSFNNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIV-DG--eW  386 (408)
                      +|+|.|..      ++..|.+.+.|++|...  +.|.+..       . ....+.|++++.+|..-|+..|+. ||  .|
T Consensus         3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~-------~-~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w   74 (87)
T PF03423_consen    3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMC-------V-PDEGGWWKATVDVPEDAYVMDFVFNDGAGNW   74 (87)
T ss_dssp             EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEES-------S----TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred             EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceee-------e-eecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence            67888843      37889999999999865  4565521       0 012789999999999999999997 65  56


Q ss_pred             ee
Q 015355          387 KV  388 (408)
Q Consensus       387 ~~  388 (408)
                      -.
T Consensus        75 DN   76 (87)
T PF03423_consen   75 DN   76 (87)
T ss_dssp             ES
T ss_pred             eC
Confidence            43

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>TIGR02104 pulA_typeI pullulanase, type I

Probab=93.86  E-value=0.24  Score=52.96  Aligned_cols=66  Identities=24%  Similarity=0.318  Sum_probs=46.5

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCeEEEEEE-eCCc-eEEEEEEEcCE--ee
Q 015355          318 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVDGQ--WK  387 (408)
Q Consensus       318 ~VTFtW~g~-AkeV~VaGSFNNW~~-----~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPG-rYEYKFIVDGe--W~  387 (408)
                      .|+|+..++ |+.|.|.+ |++|..     .++|.+.            ..|+|++.+. +.+| .|.|++..+|.  ++
T Consensus        20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~------------~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~   86 (605)
T TIGR02104        20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG------------ENGVWSAVLEGDLHGYFYTYQVCINGKWRET   86 (605)
T ss_pred             eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC------------CCCEEEEEECCCCCCCEEEEEEEcCCCeEEE
Confidence            478976665 99999997 888853     4678763            5799999996 5666 44444444565  48


Q ss_pred             eCCCCCeec
Q 015355          388 VDPQRESVT  396 (408)
Q Consensus       388 ~DPd~Ptvt  396 (408)
                      .||-.....
T Consensus        87 ~DPya~~~~   95 (605)
T TIGR02104        87 VDPYAKAVT   95 (605)
T ss_pred             cCCCcceec
Confidence            899776554

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=93.58  E-value=0.48  Score=41.35  Aligned_cols=56  Identities=21%  Similarity=0.415  Sum_probs=38.3

Q ss_pred             EEecCCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc----eEEEEEEE
Q 015355          322 QYSGDGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG----TYEIKFIV  382 (408)
Q Consensus       322 tW~g~AkeV~VaGSF---NNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG----rYEYKFIV  382 (408)
                      ++-.++.+|+|+|+-   .+|+..  ++|....-+     ........|.+.+.||+|    ..+|||+.
T Consensus        10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt-----~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~   74 (112)
T cd05806          10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKA-----LSPQEPSLWLGEVELSEPGSEDTFWYKFLK   74 (112)
T ss_pred             eecCCCCEEEEEECchhcCCCCccccccccccccc-----ccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence            344568999999986   599854  566542000     000134579999999986    69999997

Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen

>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase

Probab=92.57  E-value=0.81  Score=40.03  Aligned_cols=79  Identities=22%  Similarity=0.282  Sum_probs=53.2

Q ss_pred             eEEEEEEe----cCCceEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEEcCE-
Q 015355          317 EVVEIQYS----GDGEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ-  385 (408)
Q Consensus       317 r~VTFtW~----g~AkeV~VaGSFNNW~~~-----IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIVDGe-  385 (408)
                      +.|||-|.    +....|.|-|..|+...+     -.|.+.           ....+|..++.||.+ +=.|.|+.+-. 
T Consensus         2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl-----------~gTDVW~~t~~lp~d~rgSY~~~p~~~~   70 (122)
T PF11806_consen    2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL-----------PGTDVWYWTYRLPADWRGSYSFIPDVPD   70 (122)
T ss_dssp             -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE------------TTSSEEEEEEEEETT-EEEEEEEEES-T
T ss_pred             cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC-----------CCCceEEEEEEECcccEEEEEEEecCcc
Confidence            47999999    446889999999999654     346654           356799999999999 88899997533 


Q ss_pred             ---------------eeeCCCCCeec-C----CCccceEEE
Q 015355          386 ---------------WKVDPQRESVT-K----GGICNNILR  406 (408)
Q Consensus       386 ---------------W~~DPd~Ptvt-D----~GnvNNVLe  406 (408)
                                     =+.||-||... .    .|..-++++
T Consensus        71 ~~~~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~  111 (122)
T PF11806_consen   71 ARGAQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE  111 (122)
T ss_dssp             -HHHHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred             cchhHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence                           36799999865 2    367777765

The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.

>PRK10439 enterobactin/ferric enterobactin esterase; Provisional

Probab=92.44  E-value=0.63  Score=47.87  Aligned_cols=84  Identities=15%  Similarity=0.130  Sum_probs=56.4

Q ss_pred             cCCceEEEEEEecC-C-------ceEEEEee--eC--CCccccccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEE
Q 015355          313 LSGLEVVEIQYSGD-G-------EIVEVAGS--FN--GWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIK  379 (408)
Q Consensus       313 LsgLr~VTFtW~g~-A-------keV~VaGS--FN--NW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYK  379 (408)
                      ..+.+.|||-|+++ +       ..|+|.+.  .+  .+.....|.+-+           ...+|..++.||.. +-.|+
T Consensus        35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~-----------~tDvW~~~~~~p~~~r~sY~  103 (411)
T PRK10439         35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIA-----------GTDVWQWSTELSANWRGSYC  103 (411)
T ss_pred             CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccC-----------CCceEEEEEEECcccEEEEE
Confidence            35568999999985 3       24887422  22  132233687753           56799999999999 89999


Q ss_pred             EEEc---C-------------------------EeeeCCCCCeecC--CCccceEEEe
Q 015355          380 FIVD---G-------------------------QWKVDPQRESVTK--GGICNNILRV  407 (408)
Q Consensus       380 FIVD---G-------------------------eW~~DPd~PtvtD--~GnvNNVLeV  407 (408)
                      |+++   .                         .-+.||.||....  .|+..|+|++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l  161 (411)
T PRK10439        104 FIPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM  161 (411)
T ss_pred             EEeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence            9992   1                         1147999998763  3444577654

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=92.02  E-value=0.47  Score=52.12  Aligned_cols=55  Identities=24%  Similarity=0.413  Sum_probs=41.1

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCEe
Q 015355          318 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW  386 (408)
Q Consensus       318 ~VTFtW~g~-AkeV~VaGSFNNW~~----~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGeW  386 (408)
                      .|+|+..++ |+.|.|. -|++|..    .++|.+            +..|+|.+.+. +.+|.| |+|.|+|.|
T Consensus        15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~g~~-Y~yrv~g~~   75 (688)
T TIGR02100        15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPE------------RTDDIWHGYLPGAQPGQL-YGYRVHGPY   75 (688)
T ss_pred             cEEEEEECCCCCEEEEE-EEcCCCCceeeEEeccc------------CCCCEEEEEECCCCCCCE-EEEEEeeee
Confidence            478876665 9999985 6766542    357865            35799999995 778874 999999854

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>PLN02950 4-alpha-glucanotransferase

Probab=91.93  E-value=1  Score=51.34  Aligned_cols=70  Identities=20%  Similarity=0.378  Sum_probs=52.2

Q ss_pred             ceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc--eEEEEEEE--
Q 015355          316 LEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--  382 (408)
Q Consensus       316 Lr~VTFtW~g----~AkeV~VaGSF---NNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG--rYEYKFIV--  382 (408)
                      .++|+|+...    .|..|+|+|+-   .+|+..  ++|..            .....|.+.+.+|.+  ..+|||++  
T Consensus       152 ~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~------------~~~p~W~~~v~lp~~~~~~EYKyv~~~  219 (909)
T PLN02950        152 EIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY------------TGDSIWEADCLVPKSDFPIKYKYALQT  219 (909)
T ss_pred             ceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc------------CCCCcEEEEEEecCCCceEEEEEEEEc
Confidence            4678888654    38999999987   499854  45654            246789999999988  58999998  


Q ss_pred             -cCE--eeeCCCCCeecC
Q 015355          383 -DGQ--WKVDPQRESVTK  397 (408)
Q Consensus       383 -DGe--W~~DPd~PtvtD  397 (408)
                       +|.  |-..++.-....
T Consensus       220 ~~g~v~WE~g~NR~~~~p  237 (909)
T PLN02950        220 AEGLVSLELGVNRELSLD  237 (909)
T ss_pred             CCCceEEeeCCCceeecC
Confidence             443  877777655554

>PLN02950 4-alpha-glucanotransferase

Probab=89.58  E-value=1.9  Score=49.13  Aligned_cols=67  Identities=18%  Similarity=0.431  Sum_probs=46.5

Q ss_pred             eEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---cC
Q 015355          317 EVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG  384 (408)
Q Consensus       317 r~VTFtW~g---~AkeV~VaGSF---NNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---DG  384 (408)
                      +.|+|....   .|+.|+|+|+-   .+|+..  ++|....         ......|++++.||.| ..+|||++   ||
T Consensus         9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~---------~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g   79 (909)
T PLN02950          9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVH---------QGDELVWEGSVSVPEGFSCEYSYYVVDDNK   79 (909)
T ss_pred             EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceeccccc---------CCCCCeEEEEEEecCCCeEEEEEEEEeCCC
Confidence            456665543   38999999998   489854  6775420         1124589999999988 69999995   44


Q ss_pred             E---eeeCCCC
Q 015355          385 Q---WKVDPQR  392 (408)
Q Consensus       385 e---W~~DPd~  392 (408)
                      .   |-..++.
T Consensus        80 ~vi~WE~g~NR   90 (909)
T PLN02950         80 NVLRWEAGKKR   90 (909)
T ss_pred             ceeeeecCCCe
Confidence            3   7666643

>PLN02960 alpha-amylase

Probab=87.79  E-value=0.53  Score=53.53  Aligned_cols=59  Identities=19%  Similarity=0.392  Sum_probs=42.3

Q ss_pred             EEEE-EEecCCceEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCeEEEEE--EeCCc----e---EEEEEEEc
Q 015355          318 VVEI-QYSGDGEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPG----T---YEIKFIVD  383 (408)
Q Consensus       318 ~VTF-tW~g~AkeV~VaGSFNNW~~~I-pM~Kd~ss~~~a~~~sk~~GvFsitL--~LPPG----r---YEYKFIVD  383 (408)
                      -|.| .|..+|..+.|.|+||||.+.. .|.+       +..+...-|+|.+++  .|.+|    .   -||.|..|
T Consensus       129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (897)
T PLN02960        129 RVDFMEWAPGARYCSLVGDFNNWSPTENRARE-------GYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD  198 (897)
T ss_pred             CeEEEEEcCCceeEEEeecccCCCcccchhhc-------ccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence            4555 6777799999999999999863 3442       112334679999998  47777    2   35888876

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=86.91  E-value=1.7  Score=50.50  Aligned_cols=66  Identities=15%  Similarity=0.231  Sum_probs=47.4

Q ss_pred             EEEEEEecC-CceEEEEee-eCCCcc---ccccCCCCCCCccccccccCCCeEEEEEE-eCCc-----eEEEEEEEcC--
Q 015355          318 VVEIQYSGD-GEIVEVAGS-FNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-----TYEIKFIVDG--  384 (408)
Q Consensus       318 ~VTFtW~g~-AkeV~VaGS-FNNW~~---~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPG-----rYEYKFIVDG--  384 (408)
                      .++|+..++ |.+|.|.+- +++|..   .++|.+.            ..|+|++.+. +.+|     -|.|+|.|+|  
T Consensus       328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~------------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~  395 (1111)
T TIGR02102       328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG------------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGG  395 (1111)
T ss_pred             CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC------------CCCEEEEEECCcccCcccCCCceEEEEEECCC
Confidence            378976665 999999984 455653   4788863            6899999986 4443     3688999876  


Q ss_pred             --EeeeCCCCCee
Q 015355          385 --QWKVDPQRESV  395 (408)
Q Consensus       385 --eW~~DPd~Ptv  395 (408)
                        ....||-...+
T Consensus       396 ~~~~~~DPYA~al  408 (1111)
T TIGR02102       396 DKVLALDPYAKSL  408 (1111)
T ss_pred             ceEEEeChhheEE
Confidence              45778866643

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>PRK03705 glycogen debranching enzyme; Provisional

Probab=86.31  E-value=1.7  Score=47.74  Aligned_cols=55  Identities=25%  Similarity=0.441  Sum_probs=40.6

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCEe
Q 015355          318 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW  386 (408)
Q Consensus       318 ~VTFtW~g~-AkeV~VaGSFNNW~--~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGeW  386 (408)
                      .|+|+..++ |+.|.|.. |+++.  ..++|.+            +..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus        20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~G~-~Y~yrv~g~~   78 (658)
T PRK03705         20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPA------------RSGDIWHGYLPGARPGL-RYGYRVHGPW   78 (658)
T ss_pred             CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeee------------ccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence            478976665 99999986 76653  2467865            35789999985 56775 5999999853

>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain

Probab=85.53  E-value=4.2  Score=33.14  Aligned_cols=58  Identities=16%  Similarity=0.068  Sum_probs=37.9

Q ss_pred             eEEEEEEec---CCceEEEEeeeCC--Cc-cccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEE
Q 015355          317 EVVEIQYSG---DGEIVEVAGSFNG--WH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV  382 (408)
Q Consensus       317 r~VTFtW~g---~AkeV~VaGSFNN--W~-~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIV  382 (408)
                      .+|+|+.+.   +...|.|.-.-+.  |. ..++|.+..+        +.....|++++.++.|++.|.|+|
T Consensus        16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~--------~~~~~~~~~~i~~~~~~~~Y~F~l   79 (116)
T cd02857          16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGS--------DELFDYWEATLPPPTGRLRYYFEL   79 (116)
T ss_pred             CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeee--------CCceeEEEEEEecCCcEEEEEEEE
Confidence            456666543   3678888655443  22 2478877521        112236999999888999999999

Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=84.53  E-value=4.1  Score=46.61  Aligned_cols=68  Identities=18%  Similarity=0.184  Sum_probs=47.8

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEc------CE-
Q 015355          317 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ-  385 (408)
Q Consensus       317 r~VTFtW~g~-AkeV~VaGSFNNW~--~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVD------Ge-  385 (408)
                      ..++|+..++ |+.|.|.+-+++|.  ..++|.++           ...|+|++.+. ...|. .|+|.|+      |. 
T Consensus       135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-----------~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v  202 (898)
T TIGR02103       135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-----------STSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKV  202 (898)
T ss_pred             CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-----------CCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeE
Confidence            4688976666 99999997776664  23678764           25799999985 45665 3777775      54 


Q ss_pred             ---eeeCCCCCeec
Q 015355          386 ---WKVDPQRESVT  396 (408)
Q Consensus       386 ---W~~DPd~Ptvt  396 (408)
                         ...||......
T Consensus       203 ~~~~v~DPYA~als  216 (898)
T TIGR02103       203 ETYLVTDPYSVSLS  216 (898)
T ss_pred             CCeEEeCcCcceEc
Confidence               37888776654

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	408
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	8e-19
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	1e-18
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	5e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	8e-05

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score = 84.3 bits (207), Expect = 8e-19
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 319 VEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEI 378
           VEI++   G  V V GSF  W   I + P              +  +   L L PGT+  
Sbjct: 6   VEIRWQQGGSKVYVTGSFTKWRKMIGLIPDS----------DNNGSFHVKLRLLPGTHRF 55

Query: 379 KFIVDGQWKVDPQRESVT-KGGICNNILRV 407
           +FIVD + +V     + T + G   N + V
Sbjct: 56  RFIVDNELRVSDFLPTATDQMGNFVNYIEV 85

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score = 79.9 bits (197), Expect = 1e-18
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 15/101 (14%)

Query: 308 AAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWST 367
             E++ +       +++G G+ V ++GSFN W  ++ M              R    +  
Sbjct: 2   VNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMT-------------RSQNNFVA 47

Query: 368 VLWLYPGTYEIKFIVDGQWKVDPQRESVTKG-GICNNILRV 407
           +L L  G ++ KF VDGQW  DP    VT   G  NNI++V
Sbjct: 48  ILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQV 88

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score = 68.3 bits (166), Expect = 5e-13
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 13/91 (14%)

Query: 320 EIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIK 379
                     VE++G   GW  RI +              + +  W     L  G +E K
Sbjct: 174 LTLKDKGFSRVEISGLDIGWGQRIPL-----------TLGKGTGFWILKRELPEGQFEYK 222

Query: 380 FIVDGQWKVDPQRESVT--KGGICNNILRVI 408
           +I+DG+W  +     +   K G  NN  +V+
Sbjct: 223 YIIDGEWTHNEAEPFIGPNKDGHTNNYAKVV 253

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 65/377 (17%), Positives = 122/377 (32%), Gaps = 106/377 (28%)

Query: 62  EELYNDLREFLSTVGLSESHVPSMK-ELSAHGRDDLAN---------IVRRRGYKFIRQL 111
           EE+     +FL +   +E   PSM   +    RD L N         + R + Y  +RQ 
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 112 LKSSTKP-------GFNGFVAEKS-LAG---QDEKVANEVED----VSLSVEVSSVRDCF 156
           L    +P       G  G    K+ +A       KV  +++     ++L    +S     
Sbjct: 144 LLE-LRPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVL 199

Query: 157 PK--SLS---DPSFVGEVSPNLNGHYEKADMEEKVANFIQNGD----LDIIED------- 200
                L    DP++      + N       ++ ++   +++      L ++ +       
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 201 RAM-----ILNGSALTS--KQIASF---ATVNHPLSEDHLGTGVEGADFDSSEARRRENQ 250
            A      IL    LT+  KQ+  F   AT  H   + H  T          E       
Sbjct: 260 NAFNLSCKIL----LTTRFKQVTDFLSAATTTHISLDHHSMT------LTPDEV------ 303

Query: 251 LEIDHLKFMLHQKEMELSRLKEQIEKEK-LALSVLQTKAVTEINKAE---KLISDKDEEL 306
             +  LK++    +     L  ++       LS++       +   +    +  DK   +
Sbjct: 304 KSL-LLKYL----DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 307 IAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWS 366
           I  E SL+ LE  E +                     ++   P S+ I         L  
Sbjct: 359 I--ESSLNVLEPAEYR-----------------KMFDRLSVFPPSAHIPT-----ILL-- 392

Query: 367 TVLWLYPGTYEIKFIVD 383
           +++W      ++  +V+
Sbjct: 393 SLIWFDVIKSDVMVVVN 409

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 14/80 (17%)

Query: 319 VEIQYSGDGEIVEVAGSFNGWH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYE 377
               +    + + + G F   +   +K+              +        L L+PG Y 
Sbjct: 22  FTRHWPQYAKNIYLIGEFTSLYPGFVKL-------------RKIEEQGIVYLKLWPGEYG 68

Query: 378 IKFIVDGQWKVDPQRESVTK 397
             F +D  ++     ++  K
Sbjct: 69  YGFQIDNDFENVLDPDNEEK 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	408
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.88
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	99.87
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	99.87
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	99.51
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	99.17
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	98.27
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	98.22
1ac0_A	108	Glucoamylase; hydrolase, starch binding domain; HE	97.82
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	97.5
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	97.28
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	97.09
2laa_A	104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	95.95
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	95.88
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	95.8
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	95.8
2vn4_A	599	Glucoamylase; hydrolase, carbohydrate binding, gly	95.68
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	95.47
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	95.38
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	95.26
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	95.2
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	95.14
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	95.01
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	94.36
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	93.91
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	93.81
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	92.93
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	92.26
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	91.1
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	90.98
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	90.86
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	90.79
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	90.7
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	90.49
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	87.18
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	85.78
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	85.25
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	83.43

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.88  E-value=1.2e-22  Score=166.04  Aligned_cols=82  Identities=34%  Similarity=0.576  Sum_probs=73.7

Q ss_pred             cCCceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcCEeeeCCCC
Q 015355          313 LSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQR  392 (408)
Q Consensus       313 LsgLr~VTFtW~g~AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDGeW~~DPd~  392 (408)
                      ....++|+|+|...|++|+|+|+||+|+ .++|.+.             .|.|++++.|+||.|+|||+|||.|++||.+
T Consensus         7 ~~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~-------------~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~   72 (96)
T 1z0n_A            7 PAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRS-------------QNNFVAILDLPEGEHQYKFFVDGQWTHDPSE   72 (96)
T ss_dssp             ---CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEE-------------TTEEEEEEEECSEEEEEEEEETTEEECCTTS
T ss_pred             CCCceEEEEEECCCCcEEEEEEEeCCCc-cccCEEC-------------CCEEEEEEEccCCCEEEEEEECCeEEcCCCC
Confidence            4456899999998899999999999999 7899862             4899999999999999999999999999999


Q ss_pred             CeecC-CCccceEEEeC
Q 015355          393 ESVTK-GGICNNILRVI  408 (408)
Q Consensus       393 PtvtD-~GnvNNVLeVe  408 (408)
                      |++.+ .|+.||+|.|.
T Consensus        73 ~~~~d~~G~~Nnvi~V~   89 (96)
T 1z0n_A           73 PIVTSQLGTVNNIIQVK   89 (96)
T ss_dssp             CEEECTTSCEEEEEEEC
T ss_pred             CeEECCCCCEeEEEEEc
Confidence            99887 79999999984

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=99.87  E-value=1.1e-22  Score=192.97  Aligned_cols=82  Identities=26%  Similarity=0.470  Sum_probs=75.2

Q ss_pred             ceEEEEEEec-CCceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcCEeeeCCCCCe
Q 015355          316 LEVVEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES  394 (408)
Q Consensus       316 Lr~VTFtW~g-~AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDGeW~~DPd~Pt  394 (408)
                      .++|+|+|.+ +|++|+|+|+|++|+..++|.++           ...|.|++++.||||.|+|||+|||+|++||++|.
T Consensus       169 k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~-----------~~~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~  237 (294)
T 3nme_A          169 RKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLG-----------KGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPF  237 (294)
T ss_dssp             CEEEEEEEECSSCSCEEEEETTTEEEEEEECEEC-----------TTTCEEEEEEEECSEEEEEEEEETTEEECCTTSCE
T ss_pred             cccceeeeccCCCCEEEEEEeccCCCCcccceEc-----------CCCCEEEEEEECCCceEEEEEEECCEEeeCCCCCe
Confidence            3899999999 59999999999999988999986           24799999999999999999999999999999998


Q ss_pred             e-cC-CCccceEEEeC
Q 015355          395 V-TK-GGICNNILRVI  408 (408)
Q Consensus       395 v-tD-~GnvNNVLeVe  408 (408)
                      + .| .|++||||.|.
T Consensus       238 ~~~d~~G~~nn~~~v~  253 (294)
T 3nme_A          238 IGPNKDGHTNNYAKVV  253 (294)
T ss_dssp             ECSCTTSCCEEEEEEC
T ss_pred             eeECCCCCEeEEEEEC
Confidence            7 56 89999999984

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=99.87  E-value=2.8e-22  Score=189.46  Aligned_cols=84  Identities=31%  Similarity=0.438  Sum_probs=77.3

Q ss_pred             CceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcCEeeeCCCCCe
Q 015355          315 GLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES  394 (408)
Q Consensus       315 gLr~VTFtW~g~AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDGeW~~DPd~Pt  394 (408)
                      .+++|+|+|.++|++|+|+|+|++|++.++|.+..          .++|.|++++.|+||+|+|||+|||+|++||++|+
T Consensus         2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~----------~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~   71 (252)
T 2qlv_B            2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDS----------DNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPT   71 (252)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECS----------SSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCE
T ss_pred             CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceecc----------CCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCE
Confidence            46899999999999999999999999888998742          35789999999999999999999999999999999


Q ss_pred             ecC-CCccceEEEeC
Q 015355          395 VTK-GGICNNILRVI  408 (408)
Q Consensus       395 vtD-~GnvNNVLeVe  408 (408)
                      +.+ .|+.||+|.|.
T Consensus        72 ~~d~~G~~nNvi~V~   86 (252)
T 2qlv_B           72 ATDQMGNFVNYIEVR   86 (252)
T ss_dssp             EBCSSCCCEEEEEEC
T ss_pred             EecCCCcCcceeecc
Confidence            987 79999999984

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=99.51  E-value=1.9e-14  Score=149.37  Aligned_cols=78  Identities=19%  Similarity=0.233  Sum_probs=67.5

Q ss_pred             CceEEEEEEec--CCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcCEee--eC
Q 015355          315 GLEVVEIQYSG--DGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK--VD  389 (408)
Q Consensus       315 gLr~VTFtW~g--~AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDGeW~--~D  389 (408)
                      +..+|+|++..  +|++|+|+|+||+|++. .+|.+             .+|.|++++.||||+|||||+|||+|.  +|
T Consensus        16 ~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~-------------~~~~~~~~~~L~~g~~~y~f~vdg~~~~~~d   82 (696)
T 4aee_A           16 GRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRK-------------IEEQGIVYLKLWPGEYGYGFQIDNDFENVLD   82 (696)
T ss_dssp             EEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEE-------------ETTEEEEEEEECSEEEEEEEEETTCCSCCCC
T ss_pred             CcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEe-------------cCCeEEEEEEcCCceEEEEEEECCEEeecCC
Confidence            55789998887  59999999999999764 67875             489999999999999999999999999  88


Q ss_pred             CCCCeec---C-CCccceEE
Q 015355          390 PQRESVT---K-GGICNNIL  405 (408)
Q Consensus       390 Pd~Ptvt---D-~GnvNNVL  405 (408)
                      |++|...   + .|..|+|.
T Consensus        83 ~~~~~~~y~~~~~g~~n~~~  102 (696)
T 4aee_A           83 PDNEEKKCVHTSFFPEYKKC  102 (696)
T ss_dssp             TTCCCEEEEECSSCTTSEEE
T ss_pred             CCCCcccccccCCcccccee
Confidence            9988755   3 68899985

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=99.17  E-value=3.4e-11  Score=123.52  Aligned_cols=67  Identities=22%  Similarity=0.509  Sum_probs=59.6

Q ss_pred             eEEEEEEecCCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcCEeeeCCCCCee
Q 015355          317 EVVEIQYSGDGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV  395 (408)
Q Consensus       317 r~VTFtW~g~AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDGeW~~DPd~Ptv  395 (408)
                      ..|.|.++..|+.|+|.|+||+|.+. .+|++             .++.|.+++.||||.|+|||+|||+|..||.+|..
T Consensus        17 ~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~-------------~g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~~   83 (645)
T 4aef_A           17 AEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQ-------------EGKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPER   83 (645)
T ss_dssp             EEEEEEEECCSSCEEEEETTTTTCTTSSEEEE-------------CSSEEEEEEEECSEEEEEEEEETTEEECCTTCCCE
T ss_pred             EEEEEecCCCCeEEEEEEcCCCCCCCcccceE-------------cCCEEEEEEEeCCceEEEEEEECCeEecCCCCCCc
Confidence            56888899889999999999999864 67765             46899999999999999999999999999999875


Q ss_pred             c
Q 015355          396 T  396 (408)
Q Consensus       396 t  396 (408)
                      .
T Consensus        84 ~   84 (645)
T 4aef_A           84 R   84 (645)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=98.27  E-value=2.1e-06  Score=73.54  Aligned_cols=60  Identities=23%  Similarity=0.571  Sum_probs=47.7

Q ss_pred             CceEEEEEEecC---CceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE
Q 015355          315 GLEVVEIQYSGD---GEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  382 (408)
Q Consensus       315 gLr~VTFtW~g~---AkeV~VaGS---FNNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV  382 (408)
                      ....|+|+....   ++.|+|+|+   +.+|++.  ++|....-        ......|++++.||.| .+||||+|
T Consensus         7 ~~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~--------~~~~~~W~~~v~lp~~~~~eYKyvi   75 (131)
T 2z0b_A            7 GPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPEND--------TGESMLWKATIVLSRGVSVQYRYFK   75 (131)
T ss_dssp             CCEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECCT--------TCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred             CeEEEEEEEeeecCCCCEEEEEeCCCcCCCCCcccccccccccc--------CCCCCeEEEEEEcCCCCcEEEEEEE
Confidence            447889988763   899999999   8999974  68876310        0156899999999998 59999999

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=98.22  E-value=3.2e-06  Score=81.98  Aligned_cols=81  Identities=21%  Similarity=0.206  Sum_probs=64.3

Q ss_pred             CCceEEEEEEecC-C-------ceEEEEeeeCCCcc------ccccCCCCCCCccccccccCCCeEEEEEEeCCceE-EE
Q 015355          314 SGLEVVEIQYSGD-G-------EIVEVAGSFNGWHH------RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTY-EI  378 (408)
Q Consensus       314 sgLr~VTFtW~g~-A-------keV~VaGSFNNW~~------~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrY-EY  378 (408)
                      .+.+.|||.|.++ |       ++|+|.  +++|..      ..+|++.           ...|+|..++.|++|.| .|
T Consensus        28 ~~~~~vtF~~~~p~a~~~~~~~~~V~~~--~~~~~d~~~~~~~~~m~r~-----------~~~~~W~~t~~l~~~~~~~Y   94 (403)
T 3c8d_A           28 DEMFEVTFWWRDPQGSEEYSTIKRVWVY--ITGVTDHHQNSQPQSMQRI-----------AGTDVWQWTTQLNANWRGSY   94 (403)
T ss_dssp             SSEEEEEEEEECTTCSTTTCCCCEEEEE--ETTTC-------CCBCEEC-----------TTSSEEEEEEEEETTCEEEE
T ss_pred             CCcEEEEEEeeCCCcccccCccceEEEE--CcCCCccccccCccccccC-----------CCCCeEEEEEEECCCcEEEE
Confidence            3568999999987 5       789998  334322      2468874           26899999999999999 99


Q ss_pred             EEEEc------------------------CEeeeCCCCCeecC-C-CccceEEEe
Q 015355          379 KFIVD------------------------GQWKVDPQRESVTK-G-GICNNILRV  407 (408)
Q Consensus       379 KFIVD------------------------GeW~~DPd~PtvtD-~-GnvNNVLeV  407 (408)
                      .|+||                        |..+.||.+|.... . |...|+|+|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~  149 (403)
T 3c8d_A           95 CFIPTERDDIFSAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEM  149 (403)
T ss_dssp             EEEEESCCSTTCCC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEEC
T ss_pred             EEEecCcccccccccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccC
Confidence            99999                        78899999998764 4 777888875

>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A

Probab=97.82  E-value=1.1e-05  Score=66.09  Aligned_cols=75  Identities=27%  Similarity=0.538  Sum_probs=55.4

Q ss_pred             CceEEEEEEecC---CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE-c-
Q 015355          315 GLEVVEIQYSGD---GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D-  383 (408)
Q Consensus       315 gLr~VTFtW~g~---AkeV~VaGSF---NNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV-D-  383 (408)
                      +...|+|.....   |+.|+|+|+.   .+|++.  ++|....        -....+.|++++.||+| .+||||+| | 
T Consensus         5 ~~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~v~~~   76 (108)
T 1ac0_A            5 TAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADK--------YTSSDPLWYVTVTLPAGESFEYKFIRIES   76 (108)
T ss_dssp             CCCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSS--------SSSSCSSCEEEECCCSSSCEECCCEECCS
T ss_pred             CeEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccc--------cCCcCCeEEEEEEeCCCCeEEEEEEEEcC
Confidence            346788887763   8999999986   589864  6887631        00145799999999999 59999999 3 


Q ss_pred             -C--EeeeCCCCCeecC
Q 015355          384 -G--QWKVDPQRESVTK  397 (408)
Q Consensus       384 -G--eW~~DPd~PtvtD  397 (408)
                       |  .|..+|+.-....
T Consensus        77 ~g~~~WE~g~nR~~~~p   93 (108)
T 1ac0_A           77 DDSVEWESDPNREYTVP   93 (108)
T ss_dssp             SSCCCCCCSSCCEECCC
T ss_pred             CCCEEeccCCCEEEECC
Confidence             4  4888887766554

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=97.50  E-value=0.0003  Score=72.46  Aligned_cols=68  Identities=24%  Similarity=0.357  Sum_probs=52.9

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEE---cCEe--ee
Q 015355          317 EVVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQW--KV  388 (408)
Q Consensus       317 r~VTFtW~g~-AkeV~VaGSFNNW~~-~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIV---DGeW--~~  388 (408)
                      ..|+|+..++ |+.|.|.|+|++|.. .++|.+.           ...|+|++.+. +.+|.+ |+|.|   ||.+  ..
T Consensus        25 ~gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~-----------~~~GvW~~~v~~~~~g~~-Y~f~i~~~~g~~~~~~   92 (617)
T 1m7x_A           25 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLR-----------KESGIWELFIPGAHNGQL-YKYEMIDANGNLRLKS   92 (617)
T ss_dssp             EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCC-----------TTTTEEEEEEETCCTTCE-EEEEEECTTSCEEEEC
T ss_pred             CcEEEEEECCCCCEEEEEEEeCCCCCceeEeEEC-----------CCCCEEEEEEcCCCCCCE-EEEEEEcCCCcEEEec
Confidence            5789975554 999999999999975 4789863           25799999997 778874 99999   6775  67


Q ss_pred             CCCCCeec
Q 015355          389 DPQRESVT  396 (408)
Q Consensus       389 DPd~Ptvt  396 (408)
                      ||-.....
T Consensus        93 DPya~~~~  100 (617)
T 1m7x_A           93 DPYAFEAQ  100 (617)
T ss_dssp             CTTCSSEE
T ss_pred             Cccceeec
Confidence            88766544

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=97.28  E-value=0.00045  Score=73.60  Aligned_cols=69  Identities=26%  Similarity=0.343  Sum_probs=52.8

Q ss_pred             ceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEE---cCEe--e
Q 015355          316 LEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQW--K  387 (408)
Q Consensus       316 Lr~VTFtW~g~-AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIV---DGeW--~  387 (408)
                      ..-|+|+..++ |+.|.|.|+||+|... .+|.+.           ...|+|.+.+. +.+|. .|||.|   ||.|  +
T Consensus       135 ~~g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~  202 (722)
T 3k1d_A          135 VSGVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVL-----------GPSGVWELFWPDFPCDG-LYKFRVHGADGVVTDR  202 (722)
T ss_dssp             EEEEEEEEECTTCSEEEEEEGGGTTCCCSCBCEEC-----------GGGCEEEEEEETCCTTC-EEEEEEECTTSCEEEE
T ss_pred             CceEEEEEECCCCCEEEEEeecCCCCCCcccCEEc-----------CCCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEe
Confidence            34688976555 9999999999999864 689763           24699999997 88885 588888   5765  6


Q ss_pred             eCCCCCeec
Q 015355          388 VDPQRESVT  396 (408)
Q Consensus       388 ~DPd~Ptvt  396 (408)
                      .||-...+.
T Consensus       203 ~DPya~~~~  211 (722)
T 3k1d_A          203 ADPFAFGTE  211 (722)
T ss_dssp             CCTTCSSBC
T ss_pred             ecccceeec
Confidence            788776654

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=97.09  E-value=0.00085  Score=71.60  Aligned_cols=65  Identities=20%  Similarity=0.380  Sum_probs=49.5

Q ss_pred             EEEEEEec-CCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEE-------eCCceEEEEEEEc---CE
Q 015355          318 VVEIQYSG-DGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ  385 (408)
Q Consensus       318 ~VTFtW~g-~AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~-------LPPGrYEYKFIVD---Ge  385 (408)
                      .|+|+..+ .|+.|.|.|+|++|... ++|.+.            ..|+|.+.+.       +++|.+ |||.|+   |.
T Consensus        66 gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~------------~~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~  132 (755)
T 3aml_A           66 ATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKD------------KFGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGA  132 (755)
T ss_dssp             EEEEEEECTTCSEEEEEEGGGTTCCTTCBCEEC------------TTSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCC
T ss_pred             eEEEEEECCCCCEEEEEEecCCCCCceeeceeC------------CCCEEEEEEcccccccCCCCCCE-EEEEEECCCCc
Confidence            58886554 59999999999999764 789763            5799999998       788875 888886   45


Q ss_pred             e--eeCCCCCee
Q 015355          386 W--KVDPQRESV  395 (408)
Q Consensus       386 W--~~DPd~Ptv  395 (408)
                      |  +.||-...+
T Consensus       133 ~~~~~dpya~~~  144 (755)
T 3aml_A          133 WVDRIPAWIRYA  144 (755)
T ss_dssp             CEEECCTTCSCE
T ss_pred             EEecCCcchheE
Confidence            6  447755443

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A

Probab=95.95  E-value=0.018  Score=48.46  Aligned_cols=67  Identities=18%  Similarity=0.246  Sum_probs=52.0

Q ss_pred             eEEEEEEecCCceEEEEeeeC--CCccc--cccCCCCCCCccccccccCCCeE-EEEEEeCCc-eEEEEEEEcCE--eee
Q 015355          317 EVVEIQYSGDGEIVEVAGSFN--GWHHR--IKMDPLPSSSIIEPIRSRKSRLW-STVLWLYPG-TYEIKFIVDGQ--WKV  388 (408)
Q Consensus       317 r~VTFtW~g~AkeV~VaGSFN--NW~~~--IpM~Kd~ss~~~a~~~sk~~GvF-sitL~LPPG-rYEYKFIVDGe--W~~  388 (408)
                      .+|+|.|..+.+.|+|-..+.  +|...  ++|.+.           .-++ | .+++.|+.| .++|+|. ||.  |-.
T Consensus         5 ~~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~-----------~~~g-w~~~TI~l~~g~~~~~~F~-dG~~~WDN   71 (104)
T 2laa_A            5 NKVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDA-----------EISG-YAKITVDIGSASQLEAAFN-DGNNNWDS   71 (104)
T ss_dssp             CEEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEE-----------TTTT-EEEEEEECTTCSCEEEEEE-CSSSCEES
T ss_pred             CEEEEEEcCCCCcEEEEEcCCCCCCCcCCccccccc-----------cCCC-eEEEEEECCCCCEEEEEEe-CCCCcCcC
Confidence            578999998899999999984  89864  678652           1134 6 699999976 8999995 875  998


Q ss_pred             CCCCCeec
Q 015355          389 DPQRESVT  396 (408)
Q Consensus       389 DPd~Ptvt  396 (408)
                      ++......
T Consensus        72 n~g~Nyt~   79 (104)
T 2laa_A           72 NNTKNYSF   79 (104)
T ss_dssp             TTTSCEEE
T ss_pred             CCCccEEe
Confidence            87766543

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=95.88  E-value=0.024  Score=58.96  Aligned_cols=70  Identities=21%  Similarity=0.392  Sum_probs=52.9

Q ss_pred             ceEEEEEEec-----CCceEEEEeeeC---CCcc--------cc-ccCCCCCCCccccccccCCCeEEEEEEeCCc-eEE
Q 015355          316 LEVVEIQYSG-----DGEIVEVAGSFN---GWHH--------RI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYE  377 (408)
Q Consensus       316 Lr~VTFtW~g-----~AkeV~VaGSFN---NW~~--------~I-pM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYE  377 (408)
                      ...|+|+...     .|+.|+|+|+..   +|++        .+ +|..            .....|++++.||+| .+|
T Consensus       581 ~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~------------~~~~~W~~~v~l~~~~~~e  648 (686)
T 1qho_A          581 QTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLA------------PNYPDWFYVFSVPAGKTIQ  648 (686)
T ss_dssp             EEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBC------------TTTTSEEEEEEEETTCEEE
T ss_pred             eEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhccccc------------CCCCcEEEEEEeCCCCeEE
Confidence            4678888765     478999999984   8987        24 5543            246789999999998 599


Q ss_pred             EEEEE---cC--EeeeCCCCCeecC
Q 015355          378 IKFIV---DG--QWKVDPQRESVTK  397 (408)
Q Consensus       378 YKFIV---DG--eW~~DPd~PtvtD  397 (408)
                      |||+|   +|  .|...|+.-....
T Consensus       649 yKy~~~~~~~~~~We~~~nr~~~~~  673 (686)
T 1qho_A          649 FKFFIKRADGTIQWENGSNHVATTP  673 (686)
T ss_dssp             EEEEEECTTSCEEECCSSCEEEECC
T ss_pred             EEEEEEcCCCCEEeCCCCCeeEECC
Confidence            99997   34  4888777666554

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=95.80  E-value=0.0095  Score=63.12  Aligned_cols=56  Identities=9%  Similarity=0.097  Sum_probs=43.7

Q ss_pred             EEEEEEec-CCceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCeEEEEEE-eC------CceEEEEEEEcC
Q 015355          318 VVEIQYSG-DGEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LY------PGTYEIKFIVDG  384 (408)
Q Consensus       318 ~VTFtW~g-~AkeV~VaGSFNNW~~-----~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LP------PGrYEYKFIVDG  384 (408)
                      .|+|+..+ .|+.|.|.+ |++|..     .++|.+.            ..|+|.+.+. +.      +|.|.|+|.|+|
T Consensus        17 ~~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g   83 (750)
T 1bf2_A           17 NITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPA------------GSGVWAVTVPVSSIKAAGITGAVYYGYRAWG   83 (750)
T ss_dssp             EEEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEEC------------STTEEEEEEEHHHHHHTTCCSCCEEEEEEEB
T ss_pred             EEEEEEECCCCCEEEEEE-EccCCCCccceEEecccC------------CCCEEEEEECCcccccccCCCCEEEEEEEEe
Confidence            38887555 499999998 987653     4678753            5699999986 66      899999999997


Q ss_pred             Ee
Q 015355          385 QW  386 (408)
Q Consensus       385 eW  386 (408)
                      .|
T Consensus        84 ~~   85 (750)
T 1bf2_A           84 PN   85 (750)
T ss_dssp             TT
T ss_pred             ee
Confidence            53

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=95.80  E-value=0.033  Score=57.82  Aligned_cols=74  Identities=22%  Similarity=0.316  Sum_probs=54.7

Q ss_pred             CceEEEEEEec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE-
Q 015355          315 GLEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-  382 (408)
Q Consensus       315 gLr~VTFtW~g----~AkeV~VaGSFN---NW~~~--I-pM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV-  382 (408)
                      +...|+|+...    .++.|+|+|+-.   +|++.  + +|....         ......|++++.||.| .+||||++ 
T Consensus       578 ~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~---------~~~~~~W~~~v~lp~~~~~eyK~v~~  648 (680)
T 1cyg_A          578 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQV---------VYSYPTWYIDVSVPEGKTIEFKFIKK  648 (680)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSS---------SSCTTCEEEEEEEESSCEEEEEEEEE
T ss_pred             CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccc---------CCCCCcEEEEEEeCCCCcEEEEEEEE
Confidence            35678888865    389999999885   99864  5 676410         0246799999999988 79999997 


Q ss_pred             --cC--EeeeCCCCCeecC
Q 015355          383 --DG--QWKVDPQRESVTK  397 (408)
Q Consensus       383 --DG--eW~~DPd~PtvtD  397 (408)
                        +|  .|-..|+.-....
T Consensus       649 ~~~~~~~WE~g~Nr~~~~~  667 (680)
T 1cyg_A          649 DSQGNVTWESGSNHVYTTP  667 (680)
T ss_dssp             CTTSCEEECCSSCEEEECC
T ss_pred             eCCCCeEeCCCCCeeEECC
Confidence              34  4877776665554

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*

Probab=95.68  E-value=0.035  Score=58.00  Aligned_cols=73  Identities=27%  Similarity=0.519  Sum_probs=52.9

Q ss_pred             eEEEEEEecC---CceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---cC
Q 015355          317 EVVEIQYSGD---GEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG  384 (408)
Q Consensus       317 r~VTFtW~g~---AkeV~VaGSFN---NW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---DG  384 (408)
                      +.|+|.....   |+.|+|+|+-.   +|++.  ++|....        -...+..|++++.||+| .+||||+|   +|
T Consensus       497 v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~--------~t~~~~~W~~~v~lp~~~~~eYKyvv~~~~g  568 (599)
T 2vn4_A          497 VAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVN--------YADNHPLWIGTVNLEAGDVVEYKYINVGQDG  568 (599)
T ss_dssp             EEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCTT--------CBTTBCEEEEEEEEETTCEEEEEEEEECTTC
T ss_pred             EEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeeccccc--------CCCCCCcEEEEEEcCCCCcEEEEEEEECCCC
Confidence            5688887663   89999999884   89863  6787631        00124789999999998 59999998   33


Q ss_pred             --EeeeCCCCCeecC
Q 015355          385 --QWKVDPQRESVTK  397 (408)
Q Consensus       385 --eW~~DPd~PtvtD  397 (408)
                        .|...|+.-....
T Consensus       569 ~~~WE~g~NR~~~~p  583 (599)
T 2vn4_A          569 SVTWESDPNHTYTVP  583 (599)
T ss_dssp             CEEECCSSCEEEECC
T ss_pred             ceEeCCCCCEEEecC
Confidence              3777776655544

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=95.47  E-value=0.013  Score=59.79  Aligned_cols=61  Identities=13%  Similarity=0.073  Sum_probs=49.8

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCE-eeeCCCCCe
Q 015355          318 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-WKVDPQRES  394 (408)
Q Consensus       318 ~VTFtW~g~-AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGe-W~~DPd~Pt  394 (408)
                      .|+|+..++ |+.|.|.|.|+   ..++|.+.            ..|+|.+.+. +.+|. .|+|.|||. ...||....
T Consensus        10 ~~~f~vwap~a~~v~l~~~~~---~~~~m~~~------------~~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~   73 (558)
T 3vgf_A           10 EVIFTLWAPYQKSVKLKVLEK---GLYEMERD------------EKGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRY   73 (558)
T ss_dssp             EEEEEEECTTCSCCEEEETTT---EEEECEEC------------TTCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSC
T ss_pred             cEEEEEECCCCCEEEEEEecC---ceeecccC------------CCCEEEEEECCCCCCC-EEEEEEeCCccccCcchhh
Confidence            578876555 99999999987   56899874            4699999996 88895 699999997 788997654

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=95.38  E-value=0.025  Score=58.93  Aligned_cols=54  Identities=24%  Similarity=0.338  Sum_probs=42.7

Q ss_pred             EEEEEEec-CCceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCE
Q 015355          318 VVEIQYSG-DGEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ  385 (408)
Q Consensus       318 ~VTFtW~g-~AkeV~VaGSFNNW~--~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGe  385 (408)
                      .|+|+..+ .|+.|.|.+ |+++.  ..++|.+.            ..|+|.+.+. +.+|.+ |+|.|+|.
T Consensus        20 g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~------------~~g~w~~~v~~~~~g~~-Y~y~v~~~   77 (657)
T 2wsk_A           20 GVNFTLFSAHAERVELCV-FDANGQEHRYDLPGH------------SGDIWHGYLPDARPGLR-YGYRVHGP   77 (657)
T ss_dssp             EEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEE------------ETTEEEEEEETCCTTCE-EEEEEECC
T ss_pred             eEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCC------------CCCEEEEEECCCCCCCE-EEEEEeee
Confidence            58887555 499999999 98765  35789752            5699999885 788887 99999984

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=95.26  E-value=0.038  Score=57.42  Aligned_cols=73  Identities=22%  Similarity=0.325  Sum_probs=52.8

Q ss_pred             ceEEEEEEec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE-c
Q 015355          316 LEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D  383 (408)
Q Consensus       316 Lr~VTFtW~g----~AkeV~VaGSFN---NW~~~--I-pM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV-D  383 (408)
                      ...|+|+...    .++.|+|+|+..   +|++.  + +|....         ......|++++.||.| .+||||++ |
T Consensus       583 ~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~---------~~~~~~W~~~v~lp~~~~~eyK~~~~~  653 (683)
T 3bmv_A          583 QICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQV---------VYQYPTWYYDVSVPAGTTIQFKFIKKN  653 (683)
T ss_dssp             EEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSS---------SSCTTSEEEEEEEETTCEEEEEEEEES
T ss_pred             eEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccC---------CCCCCcEEEEEEeCCCCcEEEEEEEEc
Confidence            4678888866    389999999986   99863  5 676410         0146799999999988 79999997 3


Q ss_pred             C---EeeeCCCCCeecC
Q 015355          384 G---QWKVDPQRESVTK  397 (408)
Q Consensus       384 G---eW~~DPd~PtvtD  397 (408)
                      +   .|-..|+.-.+..
T Consensus       654 ~~~~~WE~g~Nr~~~~~  670 (683)
T 3bmv_A          654 GNTITWEGGSNHTYTVP  670 (683)
T ss_dssp             SSCCEECCSSCEEEECC
T ss_pred             CCceEecCCCCeeEECC
Confidence            2   4666665554443

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=95.20  E-value=0.023  Score=58.63  Aligned_cols=62  Identities=19%  Similarity=0.198  Sum_probs=48.7

Q ss_pred             EEEEEEec-CCceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcCEeeeCCCCCeec
Q 015355          318 VVEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT  396 (408)
Q Consensus       318 ~VTFtW~g-~AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDGeW~~DPd~Ptvt  396 (408)
                      .|+|+... .|+.|.|.|.    ...++|.+.            ..|+|.+.+.+.+|.+ |+|.|||....||......
T Consensus        35 ~~~f~vwap~a~~v~l~~~----~~~~~m~~~------------~~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~~   97 (602)
T 2bhu_A           35 GTRFRLWTSTARTVAVRVN----GTEHVMTSL------------GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLP   97 (602)
T ss_dssp             CEEEEEECSSCSSEEEEET----TEEEECEEE------------ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCT
T ss_pred             eEEEEEECCCCCEEEEEEc----CCEEeCeeC------------CCcEEEEEEECCCCcE-EEEEECCeEecCCCccccC
Confidence            68886555 4999999994    246889863            4689999999889986 9999999767888766543

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=95.14  E-value=0.033  Score=58.76  Aligned_cols=55  Identities=20%  Similarity=0.315  Sum_probs=42.5

Q ss_pred             EEEEEEec-CCceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCEe
Q 015355          318 VVEIQYSG-DGEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW  386 (408)
Q Consensus       318 ~VTFtW~g-~AkeV~VaGSFNNW~-----~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGeW  386 (408)
                      .|+|+..+ .|+.|.|.+ |+.+.     ..++|.+.            ..|+|.+.+. +.+|.+ |+|.|+|.|
T Consensus        30 g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~v~g~~   91 (718)
T 2vr5_A           30 GVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNK------------TGDIWHVFVPGLRPGQL-YAYRVYGPY   91 (718)
T ss_dssp             EEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEE------------SSSEEEEEEETCCTTCE-EEEEEECCE
T ss_pred             eEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccC------------CCCEEEEEeCCCCCCCE-EEEEEeeec
Confidence            58887555 499999999 87544     24788762            5799999985 789987 999999854

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=95.01  E-value=0.051  Score=56.49  Aligned_cols=74  Identities=20%  Similarity=0.280  Sum_probs=52.6

Q ss_pred             CceEEEEEEec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE-
Q 015355          315 GLEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-  382 (408)
Q Consensus       315 gLr~VTFtW~g----~AkeV~VaGSFN---NW~~~--I-pM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV-  382 (408)
                      ....|+|+...    .|+.|+|+|+..   +|++.  + +|....         ......|++++.||.| .+||||++ 
T Consensus       585 ~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~---------~~~~~~W~~~v~lp~~~~~eyK~~~~  655 (686)
T 1d3c_A          585 DQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQV---------VYQYPNWYYDVSVPAGKTIEFKFLKK  655 (686)
T ss_dssp             SEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSS---------SSCTTCEEEEEEEETTCEEEEEEEEE
T ss_pred             CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccc---------CCCCCeEEEEEEeCCCCcEEEEEEEE
Confidence            34678888865    389999999885   99864  5 565410         0245799999999988 79999997 


Q ss_pred             c-C--EeeeCCCCCeecC
Q 015355          383 D-G--QWKVDPQRESVTK  397 (408)
Q Consensus       383 D-G--eW~~DPd~PtvtD  397 (408)
                      | +  .|-..++.-....
T Consensus       656 ~~~~~~WE~g~Nr~~~~~  673 (686)
T 1d3c_A          656 QGSTVTWEGGSNHTFTAP  673 (686)
T ss_dssp             ETTEEEECCSSCEEEECC
T ss_pred             cCCceEecCCCCeEEECC
Confidence            3 2  3666655544443

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=94.36  E-value=0.088  Score=54.11  Aligned_cols=71  Identities=20%  Similarity=0.288  Sum_probs=51.6

Q ss_pred             ceEEEEEEec----CCceEEEEeeeC---CCccc---cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE-c
Q 015355          316 LEVVEIQYSG----DGEIVEVAGSFN---GWHHR---IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D  383 (408)
Q Consensus       316 Lr~VTFtW~g----~AkeV~VaGSFN---NW~~~---IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV-D  383 (408)
                      .+.|+|....    .|+.|+|+|+-.   +|+..   ++|...           ..++.|++++.||.| ..||||+| |
T Consensus       419 ~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~-----------~~p~~W~~~v~lp~~~~~eYKyv~~~  487 (516)
T 1vem_A          419 PVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYD-----------SHSNDWRGNVVLPAERNIEFKAFIKS  487 (516)
T ss_dssp             EEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEE-----------TTTTEEEEEEEEETTCCEEEEEEEEC
T ss_pred             ccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccC-----------CCCCEEEEEEEECCCCcEEEEEEEEe
Confidence            4788998765    389999999984   89865   356531           234599999999988 59999997 3


Q ss_pred             --C---EeeeCCCCCeecC
Q 015355          384 --G---QWKVDPQRESVTK  397 (408)
Q Consensus       384 --G---eW~~DPd~PtvtD  397 (408)
                        |   .|-..++.-..+.
T Consensus       488 ~~g~v~~WE~g~NR~~~~p  506 (516)
T 1vem_A          488 KDGTVKSWQTIQQSWNPVP  506 (516)
T ss_dssp             TTSCEEEECSSCEEESSCC
T ss_pred             CCCCeeEEeCCCCEEEecC
Confidence              2   4766665544443

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=93.91  E-value=0.091  Score=55.19  Aligned_cols=66  Identities=18%  Similarity=0.201  Sum_probs=48.2

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEc--CEe--eeCC
Q 015355          318 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD--GQW--KVDP  390 (408)
Q Consensus       318 ~VTFtW~g~-AkeV~VaGSFNNW~~-~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVD--GeW--~~DP  390 (408)
                      .|+|+...+ |+.|.|.+.|++|.. .++|.+.            ..|+|.+.+. +.+|. .|+|.|+  |.|  ..||
T Consensus       114 ~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~------------~~g~w~~~v~~~~~g~-~Y~f~v~~~g~~~~~~DP  180 (718)
T 2e8y_A          114 HTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRL------------EKGVYAVTVTGDLHGY-EYLFCICNNSEWMETVDQ  180 (718)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTSCCEEEECEEC------------GGGEEEEEEESCCTTC-EEEEEEEETTEEEEECCT
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCcceEEeCccC------------CCCEEEEEECCCCCCC-eEEEEEEeCCeEEEecCC
Confidence            588875555 999999999988864 4789874            4689999987 45663 4666664  775  5688


Q ss_pred             CCCeec
Q 015355          391 QRESVT  396 (408)
Q Consensus       391 d~Ptvt  396 (408)
                      ....+.
T Consensus       181 ya~~~~  186 (718)
T 2e8y_A          181 YAKAVT  186 (718)
T ss_dssp             TCSSBC
T ss_pred             cccccc
Confidence            776544

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=93.81  E-value=0.083  Score=53.81  Aligned_cols=59  Identities=14%  Similarity=0.057  Sum_probs=43.0

Q ss_pred             eEEEEE-EecCCceEEE-EeeeCCCcc----ccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEc
Q 015355          317 EVVEIQ-YSGDGEIVEV-AGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD  383 (408)
Q Consensus       317 r~VTFt-W~g~AkeV~V-aGSFNNW~~----~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVD  383 (408)
                      ..++|+ |...++.|.| .|+|++|..    .++|.+...        ++..|+|++.+......+.|+|.|.
T Consensus        23 ~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~--------~~~~~~w~~~i~~~~~~~~Y~f~i~   87 (585)
T 1wzl_A           23 LRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGS--------DERFDYFEALLECSTKRVKYVFLLT   87 (585)
T ss_dssp             EEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEE--------CSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeec--------CCCEEEEEEEEECCCCeEEEEEEEE
Confidence            445553 4456999999 899999965    478986410        1124579999998877889999985

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=92.93  E-value=0.13  Score=57.44  Aligned_cols=67  Identities=18%  Similarity=0.105  Sum_probs=49.6

Q ss_pred             EEEEEEecC-CceEEEEe-eeCCCcc-ccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEc------CE--
Q 015355          318 VVEIQYSGD-GEIVEVAG-SFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ--  385 (408)
Q Consensus       318 ~VTFtW~g~-AkeV~VaG-SFNNW~~-~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVD------Ge--  385 (408)
                      .|+|+...+ |+.|.|.+ +|++|.. .++|.+.           ...|+|.+.+. +.+|.| |+|.|+      |.  
T Consensus       305 gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~-----------~~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~  372 (1083)
T 2fhf_A          305 GVTFRVWAPTAQQVELVIYSADKKVIASHPMTRD-----------SASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVE  372 (1083)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTCCEEEEEECEEC-----------TTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEE
T ss_pred             eEEEEEECCCCCEEEEEEEcCCCCccceEECeEC-----------CCCCEEEEEECCCCCCCE-EEEEEEeecCCCCccc
Confidence            588875555 99999999 8899975 4788753           25689999885 788865 888875      43  


Q ss_pred             --eeeCCCCCeec
Q 015355          386 --WKVDPQRESVT  396 (408)
Q Consensus       386 --W~~DPd~Ptvt  396 (408)
                        ...||......
T Consensus       373 ~~~~~DPYa~~~~  385 (1083)
T 2fhf_A          373 QYEVTDPYAHSLS  385 (1083)
T ss_dssp             EEEECCTTCSCBC
T ss_pred             cceecCCccceec
Confidence              46788776544

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=92.26  E-value=0.12  Score=52.75  Aligned_cols=60  Identities=15%  Similarity=0.172  Sum_probs=43.5

Q ss_pred             ceEEEEE-EecCCceEEE-EeeeCCCcc------ccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEc
Q 015355          316 LEVVEIQ-YSGDGEIVEV-AGSFNGWHH------RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD  383 (408)
Q Consensus       316 Lr~VTFt-W~g~AkeV~V-aGSFNNW~~------~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVD  383 (408)
                      ..+++|+ |...++.|.| .|+|++|..      .++|.+..+        +...|.|++.+......+.|+|.|+
T Consensus        22 ~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~--------~~~~~~w~~~v~~~~~~~~Y~f~i~   89 (588)
T 1j0h_A           22 TLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGS--------DELFDYWFAEVKPPYRRLRYGFVLY   89 (588)
T ss_dssp             CEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEE--------CSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred             EEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeec--------CCCeEEEEEEEECCCcEEEEEEEEE
Confidence            4566665 4556999999 799999964      478986410        1124679999988777888999885

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=91.10  E-value=0.04  Score=55.39  Aligned_cols=70  Identities=20%  Similarity=0.411  Sum_probs=0.0

Q ss_pred             ceEEEEEE-ec---CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE-c-
Q 015355          316 LEVVEIQY-SG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D-  383 (408)
Q Consensus       316 Lr~VTFtW-~g---~AkeV~VaGSFN---NW~~--~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV-D-  383 (408)
                      ..+|+|+. ..   .|+.|+|+|+-.   +|++  .++|...           .....|++++.||+| .+||||+| | 
T Consensus       430 ~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~-----------~~~~~W~~~v~lp~~~~~eyKy~~~~~  498 (527)
T 1gcy_A          430 LVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDT-----------SGYPTWKGSIALPAGQNEEWKCLIRNE  498 (527)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccC-----------CCCCeEEEEEEeCCCCcEEEEEEEEeC
Confidence            35677776 33   389999999885   8987  3678631           145789999999999 69999996 3 


Q ss_pred             -C-----EeeeCCCCCeec
Q 015355          384 -G-----QWKVDPQRESVT  396 (408)
Q Consensus       384 -G-----eW~~DPd~Ptvt  396 (408)
                       |     .|...|+.-...
T Consensus       499 ~~~~~~~~We~g~nr~~~~  517 (527)
T 1gcy_A          499 ANATQVRQWQGGANNSLTP  517 (527)
T ss_dssp             -------------------
T ss_pred             CCCcceeEecCCCCeeEEC
Confidence             3     376666655443

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=90.98  E-value=0.31  Score=53.07  Aligned_cols=63  Identities=16%  Similarity=0.243  Sum_probs=45.8

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc----cccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEE--cCE--ee
Q 015355          318 VVEIQYSGD-GEIVEVAGSFNGWH----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV--DGQ--WK  387 (408)
Q Consensus       318 ~VTFtW~g~-AkeV~VaGSFNNW~----~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIV--DGe--W~  387 (408)
                      .|+|+...+ |..|.|.+ |++|.    ..++|.+.            ..|+|.+.+. +.+|.+ |+|.|  +|.  ..
T Consensus       326 gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~g~~-Y~y~v~~~g~~~~~  391 (921)
T 2wan_A          326 ATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKS------------DNGTWKLQVSGNLENWY-YLYQVTVNGTTQTA  391 (921)
T ss_dssp             EEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEEC------------GGGEEEEEEESCCTTCE-EEEEEECSSCEEEE
T ss_pred             eEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeC------------CCCEEEEEEccCCCCCE-EEEEEEeCCeEEEe
Confidence            588876555 99999997 99994    34789864            4689999986 567753 66666  565  45


Q ss_pred             eCCCCCe
Q 015355          388 VDPQRES  394 (408)
Q Consensus       388 ~DPd~Pt  394 (408)
                      .||-...
T Consensus       392 ~DPya~~  398 (921)
T 2wan_A          392 VDPYARA  398 (921)
T ss_dssp             CCTTCSS
T ss_pred             cCCccee
Confidence            6886654

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=90.86  E-value=0.4  Score=49.87  Aligned_cols=62  Identities=19%  Similarity=0.235  Sum_probs=46.4

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEc-CEeeeCCCCCe
Q 015355          318 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD-GQWKVDPQRES  394 (408)
Q Consensus       318 ~VTFtW~g~-AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVD-GeW~~DPd~Pt  394 (408)
                      .|+|+..++ |+.|.|.+   +|. .++|.+.            ..|.|.+.+. +.+|. .|+|.|+ |....||....
T Consensus        43 ~~~F~vwap~a~~v~l~~---~~~-~~~m~~~------------~~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~  105 (618)
T 3m07_A           43 VVRFRLWATGQQKVMLRL---AGK-DQEMQAN------------GDGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRA  105 (618)
T ss_dssp             EEEEEEECTTCSCEEEEE---TTE-EEECEEC------------STTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSC
T ss_pred             cEEEEEECCCCCEEEEEE---CCC-cccCeec------------CCEEEEEEeCCCCCCC-EEEEEEeCCeEecccccee
Confidence            578876555 99999998   354 4789874            4689999884 77886 5899995 56888997765


Q ss_pred             ec
Q 015355          395 VT  396 (408)
Q Consensus       395 vt  396 (408)
                      ..
T Consensus       106 ~~  107 (618)
T 3m07_A          106 QK  107 (618)
T ss_dssp             BS
T ss_pred             ee
Confidence            44

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=90.79  E-value=0.27  Score=51.16  Aligned_cols=103  Identities=17%  Similarity=0.023  Sum_probs=59.5

Q ss_pred             HhhhhhhhhhhhhhccccccccccchHHHHHHHhhcCCc------eEEEEEEecC-CceEEEEeeeCCCcccc--ccCCC
Q 015355          278 KLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGL------EVVEIQYSGD-GEIVEVAGSFNGWHHRI--KMDPL  348 (408)
Q Consensus       278 K~~lsvlq~k~~~ei~~AqkLl~eK~~~LdaAe~aLsgL------r~VTFtW~g~-AkeV~VaGSFNNW~~~I--pM~Kd  348 (408)
                      |.+|.|.+.-+.-.+..|..+=-  ...||+.-.-...+      .-|+|+..++ |+.|.|.+-+++|....  .|.+ 
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~q~--~~~~d~~~~y~~plGa~~~~~g~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~-  169 (884)
T 4aio_A           93 KCQLVVASFGADGKHVDVTGLQL--PGVLDDMFAYTGPLGAVFSEDSVSLHLWAPTAQGVSVCFFDGPAGPALETVQLK-  169 (884)
T ss_dssp             TSEEEEEEECTTSSEEEEEEEEC--HHHHHHHHCCCSCCEEEECSSEEEEEEECTTCSEEEEEEESTTTSCEEEEEECE-
T ss_pred             hcceEEEEECCCCCEeecccccc--CcccccccccCCCccCEEECCEEEEEEECCCCCEEEEEEEeCCCCCeeeeeeec-
Confidence            34565555444444444433211  23456544321112      2488975554 99999999555665442  2332 


Q ss_pred             CCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCE----------eeeCCCCCee
Q 015355          349 PSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ----------WKVDPQRESV  395 (408)
Q Consensus       349 ~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGe----------W~~DPd~Ptv  395 (408)
                                 +..|+|++.+. +.+|.+ |+|.|+|.          ...||-...+
T Consensus       170 -----------~~~g~W~~~~~~~~~g~~-Y~y~v~~~~~~~~~~~~~~~~DPya~~~  215 (884)
T 4aio_A          170 -----------ESNGVWSVTGPREWENRY-YLYEVDVYHPTKAQVLKCLAGDPYARSL  215 (884)
T ss_dssp             -----------EETTEEEEEEEGGGTTCE-EEEEEEEEETTTTEEEEEEECCTTCSEE
T ss_pred             -----------CCCCEEEEEECCCCCCCE-EEEEEeCCCCCcccccCccccCCCeeee
Confidence                       35799999986 567754 88888752          3468866543

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=90.70  E-value=0.38  Score=50.53  Aligned_cols=64  Identities=19%  Similarity=0.296  Sum_probs=46.4

Q ss_pred             EEEEEec-CCceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCeEEEEEEe--CCc-----eEEEEEEEc--C
Q 015355          319 VEIQYSG-DGEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWL--YPG-----TYEIKFIVD--G  384 (408)
Q Consensus       319 VTFtW~g-~AkeV~VaG-SFNNW~~---~IpM~Kd~ss~~~a~~~sk~~GvFsitL~L--PPG-----rYEYKFIVD--G  384 (408)
                      |+|+..+ .|+.|.|.+ ++++|..   .++|.+.            ..|+|.+.+.-  .+|     -+.|+|.|+  |
T Consensus        26 v~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~~   93 (714)
T 2ya0_A           26 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG------------ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQG   93 (714)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC------------GGGEEEEEECTTCSSSCSCCTTCEEEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCccceEEeCccC------------CCCEEEEEECCccCCCccccCCcEEEEEEEeCC
Confidence            7887555 499999999 7888864   5789763            46999998863  134     266888886  6


Q ss_pred             Ee--eeCCCCCe
Q 015355          385 QW--KVDPQRES  394 (408)
Q Consensus       385 eW--~~DPd~Pt  394 (408)
                      .+  ..||-...
T Consensus        94 ~~~~~~DPya~~  105 (714)
T 2ya0_A           94 KTVLALDPYAKS  105 (714)
T ss_dssp             EEEEECCTTCSE
T ss_pred             ceEEecCCceee
Confidence            54  57997654

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=90.49  E-value=0.22  Score=54.33  Aligned_cols=65  Identities=17%  Similarity=0.196  Sum_probs=48.2

Q ss_pred             EEEEEecC-CceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCeEEEEEEeCCce-----EEEEEEEc--CE-
Q 015355          319 VEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGT-----YEIKFIVD--GQ-  385 (408)
Q Consensus       319 VTFtW~g~-AkeV~VaG-SFNNW~~---~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGr-----YEYKFIVD--Ge-  385 (408)
                      |.|+..++ |+.|.|.+ ++++|..   .++|.+.            ..|+|.+.+.+.||.     +.|+|.|+  |. 
T Consensus       146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~  213 (877)
T 3faw_A          146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKN------------NKGVWQTILDTKLGIKNYTGYYYLYEIKRGKDK  213 (877)
T ss_dssp             EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEEC------------TTSEEEEEECGGGTCSCCTTCEEEEEEEETTEE
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCccceeeeccccC------------CCCEEEEEECCCCCCccCCCeEEEEEEeeCCce
Confidence            78976555 99999998 6777853   5789763            579999999776762     67888886  33 


Q ss_pred             -eeeCCCCCee
Q 015355          386 -WKVDPQRESV  395 (408)
Q Consensus       386 -W~~DPd~Ptv  395 (408)
                       ...||-...+
T Consensus       214 ~~~~DPYA~~~  224 (877)
T 3faw_A          214 VKILDPYAKSL  224 (877)
T ss_dssp             EEECCTTCSCB
T ss_pred             eEecCccceec
Confidence             4668877544

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=87.18  E-value=0.68  Score=50.48  Aligned_cols=58  Identities=22%  Similarity=0.358  Sum_probs=40.4

Q ss_pred             EEEEEEecCCceEEEEeee-------CCCcccc---ccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcCEee
Q 015355          318 VVEIQYSGDGEIVEVAGSF-------NGWHHRI---KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK  387 (408)
Q Consensus       318 ~VTFtW~g~AkeV~VaGSF-------NNW~~~I---pM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDGeW~  387 (408)
                      +|..--...+..+.+.|+|       .+|.+.-   -|.+            ..+|.|+.+-.||+|.||||+.++|.|.
T Consensus       154 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~~~~------------~~~~~y~~~~~l~~g~y~~kv~~~~~w~  221 (921)
T 2wan_A          154 PVTSAVSANPVTAVLVGDLQQALGAANNWSPDDDHTLLKK------------INPNLYQLSGTLPAGTYQYKIALDHSWN  221 (921)
T ss_dssp             CEEEEEECCCCCEEEEETTSGGGTCSSSSCTTCGGGBCEE------------EETTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred             cccccccccccccccccchhhhccccccCCCCCCcceeec------------cCCcceeeeeccCCcceeEEEeecCccc
Confidence            3333333445667888866       4677542   2322            1368999999999999999999998884

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=85.78  E-value=0.48  Score=48.73  Aligned_cols=60  Identities=10%  Similarity=0.136  Sum_probs=40.9

Q ss_pred             eEEEEEEe----c-CCceEEEEeeeCCCccccccCC--CCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcC
Q 015355          317 EVVEIQYS----G-DGEIVEVAGSFNGWHHRIKMDP--LPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDG  384 (408)
Q Consensus       317 r~VTFtW~----g-~AkeV~VaGSFNNW~~~IpM~K--d~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDG  384 (408)
                      ..|+|+..    . .++.|.|.+.|++=...++|.+  ...        ++..|+|++.+........|+|.|+|
T Consensus        30 ~~v~f~v~~~~~ap~a~~V~l~~~~~~~~~~~~m~~~~~~~--------~~~~~~w~~~i~~~~~g~~Y~f~i~~   96 (637)
T 1ji1_A           30 QSVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDP--------TGTFDYWKGTIPASPSIKYYRFQIND   96 (637)
T ss_dssp             CCEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEECT--------TSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred             CEEEEEEEEecCcCCeeEEEEEEecCCCEEEEEeEEeeccc--------cCCeeEEEEEEECCCceEEEEEEEEE
Confidence            35777644    3 4899999999874122478876  210        12457999999876566779999975

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=85.25  E-value=0.2  Score=51.05  Aligned_cols=59  Identities=19%  Similarity=0.240  Sum_probs=41.9

Q ss_pred             eEEEEE-EecCCceEEE-EeeeCCCcc---ccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEc
Q 015355          317 EVVEIQ-YSGDGEIVEV-AGSFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD  383 (408)
Q Consensus       317 r~VTFt-W~g~AkeV~V-aGSFNNW~~---~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVD  383 (408)
                      ..++|+ |...+++|.| .|+|++|..   .++|.+...        +...|.|++.+......+.|||.|.
T Consensus        23 ~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~--------~~~~~~w~~~i~~~~~~~~Y~f~i~   86 (583)
T 1ea9_C           23 VHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLAT--------DELFDYWECEVTPPYRRVKYGFLLQ   86 (583)
T ss_dssp             EECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEE--------CSSCEEECCEECCTTSCEEECBCCE
T ss_pred             EEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEec--------cCCeEEEEEEEECCCceEEEEEEEE
Confidence            445554 5556999999 799999975   478987411        1224679999988777788888873

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=83.43  E-value=1.1  Score=49.44  Aligned_cols=64  Identities=19%  Similarity=0.306  Sum_probs=45.3

Q ss_pred             EEEEEecC-CceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCeEEEEEEeC--Cc-----eEEEEEEEc--C
Q 015355          319 VEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PG-----TYEIKFIVD--G  384 (408)
Q Consensus       319 VTFtW~g~-AkeV~VaG-SFNNW~~---~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LP--PG-----rYEYKFIVD--G  384 (408)
                      |+|+..++ |+.|.|.+ +|++|..   .++|.+.            ..|+|.+.+...  +|     -+.|+|.|+  |
T Consensus       333 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~~~  400 (1014)
T 2ya1_A          333 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG------------ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQG  400 (1014)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC------------GGGEEEEEECTTCSSCCSCCTTCEEEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCccceEEecccC------------CCCEEEEEEcccccCCccccCCcEEEEEEEeCC
Confidence            78876555 99999999 7888864   5789763            568999988631  23     256778775  5


Q ss_pred             E--eeeCCCCCe
Q 015355          385 Q--WKVDPQRES  394 (408)
Q Consensus       385 e--W~~DPd~Pt  394 (408)
                      .  ...||-...
T Consensus       401 ~~~~~~DPYa~~  412 (1014)
T 2ya1_A          401 KTVLALDPYAKS  412 (1014)
T ss_dssp             EEEEECCTTCSS
T ss_pred             eEEEecCcccee
Confidence            4  457886543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	408
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	5e-18
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	2e-15

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 76.1 bits (187), Expect = 5e-18
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 15/90 (16%)

Query: 319 VEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEI 378
              +++G G+ V ++GSFN W               +   +R    +  +L L  G ++ 
Sbjct: 4   TVFRWTGGGKEVYLSGSFNNWS--------------KLPMTRSQNNFVAILDLPEGEHQY 49

Query: 379 KFIVDGQWKVDPQRESVTKG-GICNNILRV 407
           KF VDGQW  DP    VT   G  NNI++V
Sbjct: 50  KFFVDGQWTHDPSEPIVTSQLGTVNNIIQV 79

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 69.0 bits (168), Expect = 2e-15
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 314 SGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP 373
           S +  VEI++   G  V V GSF  W   I + P   ++            +   L L P
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGS----------FHVKLRLLP 50

Query: 374 GTYEIKFIVDGQWKVDPQRESVTKG-GICNNILRV 407
           GT+  +FIVD + +V     + T   G   N + V
Sbjct: 51  GTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEV 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	408
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.93
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.92
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	98.25
d1m7xa1	110	1,4-alpha-glucan branching enzyme, N-terminal doma	98.17
d1qhoa2	110	Cyclodextrin glycosyltransferase, C-terminal domai	97.89
d1kula_	108	Glucoamylase, granular starch-binding domain {Aspe	97.68
d1cyga2	106	Cyclodextrin glycosyltransferase, C-terminal domai	97.64
d3bmva2	105	Cyclodextrin glycosyltransferase, C-terminal domai	97.62
d1eh9a1	90	Glycosyltrehalose trehalohydrolase, N-terminal dom	97.29
d1vema1	99	beta-amylase {Bacillus cereus [TaxId: 1396]}	96.9
d2fhfa1	115	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	95.38
d1bf2a1	162	Isoamylase, N-terminal domain N {Pseudomonas amylo	94.65
d3c8da1	145	Enterochelin esterase {Shigella flexneri 2a str. 2	83.03

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.93  E-value=1.3e-26  Score=183.44  Aligned_cols=85  Identities=32%  Similarity=0.441  Sum_probs=76.8

Q ss_pred             CCceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcCEeeeCCCCC
Q 015355          314 SGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRE  393 (408)
Q Consensus       314 sgLr~VTFtW~g~AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDGeW~~DPd~P  393 (408)
                      +.+.||+|+|.++|++|+|+|+||+|++.++|.+..          ..+|.|.+++.|+||.|+|||+|||+|++||++|
T Consensus         1 s~~vpv~f~w~~~g~~V~v~GsFn~W~~~~~~~~~~----------~~~g~~~~~l~l~~G~y~YKFiVDG~w~~d~~~p   70 (87)
T d2qlvb1           1 SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDS----------DNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLP   70 (87)
T ss_dssp             CCCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECS----------SSTTCEEEEEEECSEEEEEEEEETTEEECCTTSC
T ss_pred             CeEEEEEEEECCCCeEEEEEEEecCcCccccccccc----------CCCccEEEEEeCCCCCEEEEEEECCcEEcCCCCC
Confidence            457899999999999999999999999887765532          3578999999999999999999999999999999


Q ss_pred             eecC-CCccceEEEeC
Q 015355          394 SVTK-GGICNNILRVI  408 (408)
Q Consensus       394 tvtD-~GnvNNVLeVe  408 (408)
                      ++.| .|+.||||.|.
T Consensus        71 ~~~d~~G~~nnvi~V~   86 (87)
T d2qlvb1          71 TATDQMGNFVNYIEVR   86 (87)
T ss_dssp             EEBCSSCCCEEEEEEC
T ss_pred             eeECCCCCEeEEEEEE
Confidence            9887 79999999985

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.92  E-value=2e-25  Score=177.66  Aligned_cols=78  Identities=36%  Similarity=0.621  Sum_probs=72.2

Q ss_pred             eEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcCEeeeCCCCCeec
Q 015355          317 EVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT  396 (408)
Q Consensus       317 r~VTFtW~g~AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDGeW~~DPd~Ptvt  396 (408)
                      +||+|+|+++|++|+|+|+|++|++ .+|.+             .+|.|++++.||||.|+|||+|||+|++||+.|++.
T Consensus         2 ~P~~f~w~~~a~~V~v~Gsfn~W~~-~~~~~-------------~~g~~~~tl~L~~G~y~YKFiVDG~w~~d~~~~~~~   67 (87)
T d1z0na1           2 RPTVFRWTGGGKEVYLSGSFNNWSK-LPMTR-------------SQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVT   67 (87)
T ss_dssp             EEEEEEECSCCSCEEEEEGGGTTCC-EECEE-------------ETTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEE
T ss_pred             CCEEEEEcCCCEEEEEEEEeCCCCc-ccccc-------------CCCcEEEEEECCCceEEEEEEECCEEEeCCCCCeeE
Confidence            6999999999999999999999985 56754             578999999999999999999999999999999988


Q ss_pred             C-CCccceEEEeC
Q 015355          397 K-GGICNNILRVI  408 (408)
Q Consensus       397 D-~GnvNNVLeVe  408 (408)
                      + .|+.||||.|+
T Consensus        68 d~~G~~Nnvi~V~   80 (87)
T d1z0na1          68 SQLGTVNNIIQVK   80 (87)
T ss_dssp             CTTSCEEEEEEEC
T ss_pred             CCCCCEEEEEEEC
Confidence            7 79999999985

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.25  E-value=4.5e-07  Score=72.62  Aligned_cols=63  Identities=19%  Similarity=0.182  Sum_probs=51.8

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEEcCEeeeCCCCCee
Q 015355          317 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV  395 (408)
Q Consensus       317 r~VTFtW~g~-AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIVDGeW~~DPd~Ptv  395 (408)
                      .-|+|+..++ |++|.|.+.+.    .++|.+.            ..|.|.+++.+.+|.+ |+|.|||.|+.||.....
T Consensus        21 ~g~~FrvwAP~A~~V~l~~~~~----~~~m~~~------------~~G~w~~~~~~~~G~~-Y~y~vdg~~~~DPyar~~   83 (97)
T d2bhua1          21 AGTRFRLWTSTARTVAVRVNGT----EHVMTSL------------GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFL   83 (97)
T ss_dssp             CCEEEEEECSSCSSEEEEETTE----EEECEEE------------ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCC
T ss_pred             CeEEEEEECCCCCEeEEEeeCC----ccCCEEc------------cCEEEEEEcCCCCCCE-EEEEECCeEccCCchhcC
Confidence            3588986665 99999999643    3689874            5799999999999986 999999999999987654


Q ss_pred             c
Q 015355          396 T  396 (408)
Q Consensus       396 t  396 (408)
                      .
T Consensus        84 ~   84 (97)
T d2bhua1          84 P   84 (97)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=3.8e-06  Score=67.61  Aligned_cols=69  Identities=20%  Similarity=0.301  Sum_probs=51.8

Q ss_pred             eEEEEEE-ecCCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCeEEEEEEeCCceEEEEEEE---cCEee--eC
Q 015355          317 EVVEIQY-SGDGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV---DGQWK--VD  389 (408)
Q Consensus       317 r~VTFtW-~g~AkeV~VaGSFNNW~~~-IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPGrYEYKFIV---DGeW~--~D  389 (408)
                      .-|+|+. ...|+.|+|.|+||+|... .+|.+.           ...|.|.+.+.....-..|||.|   ||+|.  .|
T Consensus        20 ~Gv~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~-----------~~~G~W~~~i~~~~~G~~Y~y~v~~~~G~~~~~~D   88 (110)
T d1m7xa1          20 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLR-----------KESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSD   88 (110)
T ss_dssp             EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCC-----------TTTTEEEEEEETCCTTCEEEEEEECTTSCEEEECC
T ss_pred             ceEEEEEECCCCCEEEEEEECCCCCCceEEeEEe-----------cCCCcEEEEecCCCCCCEEEEEEEcCCCcEeEEcC
Confidence            3488974 4459999999999999765 578653           35789999998665556788877   78876  58


Q ss_pred             CCCCeec
Q 015355          390 PQRESVT  396 (408)
Q Consensus       390 Pd~Ptvt  396 (408)
                      |-.-...
T Consensus        89 PYA~~~e   95 (110)
T d1m7xa1          89 PYAFEAQ   95 (110)
T ss_dssp             TTCSSEE
T ss_pred             hhhcccc
Confidence            8766543

>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=97.89  E-value=6.6e-05  Score=60.13  Aligned_cols=74  Identities=19%  Similarity=0.403  Sum_probs=50.2

Q ss_pred             eEEEEEEec-----CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---
Q 015355          317 EVVEIQYSG-----DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---  382 (408)
Q Consensus       317 r~VTFtW~g-----~AkeV~VaGSFN---NW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---  382 (408)
                      ..|+|+...     .|+.|+|+|+..   +|++.  ++|.....     ..-....+.|++++.||+| .+||||+|   
T Consensus         6 ~~V~f~v~~~~~T~~Gq~v~ivG~~~~LG~W~~~~a~~l~~~~~-----~~~~~~~~~W~~~v~lp~~~~~eYKyvi~~~   80 (110)
T d1qhoa2           6 TSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQG-----PLLAPNYPDWFYVFSVPAGKTIQFKFFIKRA   80 (110)
T ss_dssp             EEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBC-----CCBCTTTTSEEEEEEEETTCEEEEEEEEECT
T ss_pred             eEEEEEEeCcccCCCCCEEEEEeCcHHHCCCChhhccccccccC-----ccccccCCeEEEEEEECCCCEEEEEEEEEcC
Confidence            578888754     379999999985   89865  56764310     0001235689999999999 69999986   


Q ss_pred             cCE--eeeCCCCCee
Q 015355          383 DGQ--WKVDPQRESV  395 (408)
Q Consensus       383 DGe--W~~DPd~Ptv  395 (408)
                      ||.  |--.|+.-.+
T Consensus        81 ~g~~~WE~g~NR~~~   95 (110)
T d1qhoa2          81 DGTIQWENGSNHVAT   95 (110)
T ss_dssp             TSCEEECCSSCEEEE
T ss_pred             CCCEEEcCCCCEEEE
Confidence            453  6555544433

>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Glucoamylase, granular starch-binding domain
species: Aspergillus niger [TaxId: 5061]

Probab=97.68  E-value=3.5e-05  Score=61.47  Aligned_cols=74  Identities=28%  Similarity=0.552  Sum_probs=53.9

Q ss_pred             CceEEEEEEecC---CceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---
Q 015355          315 GLEVVEIQYSGD---GEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---  382 (408)
Q Consensus       315 gLr~VTFtW~g~---AkeV~VaGSFN---NW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---  382 (408)
                      ....|+|.....   |+.|+|+|+..   +|++.  ++|.....        ....+.|...+.||+| .+||||+|   
T Consensus         5 ~~v~V~F~v~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~--------~~~~~~w~~~v~~~~~~~~eYKyvi~~~   76 (108)
T d1kula_           5 TAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKY--------TSSDPLWYVTVTLPAGESFEYKFIRIES   76 (108)
T ss_dssp             TCCCEEEECCCCCCSSCEEEEECSSGGGTTTCTTTSEECBCTTC--------SSSSCCCBCEECCCSCCEECCEEEEECS
T ss_pred             CEEEEEEEEEeEcCCCCEEEEEeChHHhCCCCHHHCccceEccc--------cCCCCCEEEEEEeCCCCeEEEEEEEECC
Confidence            456788887653   89999999974   99764  67875310        1245689999999998 69999998   


Q ss_pred             cCE--eeeCCCCCeec
Q 015355          383 DGQ--WKVDPQRESVT  396 (408)
Q Consensus       383 DGe--W~~DPd~Ptvt  396 (408)
                      ||.  |-..++.-...
T Consensus        77 ~g~~~WE~g~NR~~~~   92 (108)
T d1kula_          77 DDSVEWESDPNREYTV   92 (108)
T ss_dssp             SSCEEECCSSCCCEEC
T ss_pred             CCCEEEccCCCEEEEe
Confidence            464  77666655544

>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.64  E-value=0.00013  Score=58.02  Aligned_cols=74  Identities=20%  Similarity=0.288  Sum_probs=53.1

Q ss_pred             CceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE--
Q 015355          315 GLEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--  382 (408)
Q Consensus       315 gLr~VTFtW~g----~AkeV~VaGSF---NNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV--  382 (408)
                      ...+|+|....    .|+.|+|+|+.   .+|++.  ++|.....        ....+.|.+++.+|.| .++|||+|  
T Consensus         4 ~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~--------~~~~~~w~~~v~~~~~~~~eYKyvi~~   75 (106)
T d1cyga2           4 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQV--------VYSYPTWYIDVSVPEGKTIEFKFIKKD   75 (106)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSS--------SSCTTCEEEEEEEESSCEEEEEEEEEC
T ss_pred             CEEEEEEEEcceEcCCCCEEEEEcCHHHHCCCCHHHCccceeccC--------cCCCCeEEEEEEeCCCCeEEEEEEEEc
Confidence            34788998853    48999999996   599754  77876421        1134689999999999 79999997  


Q ss_pred             -cCE--eeeCCCCCeec
Q 015355          383 -DGQ--WKVDPQRESVT  396 (408)
Q Consensus       383 -DGe--W~~DPd~Ptvt  396 (408)
                       ||.  |-..|+.-.+.
T Consensus        76 ~~g~~~WE~g~NR~~~~   92 (106)
T d1cyga2          76 SQGNVTWESGSNHVYTT   92 (106)
T ss_dssp             TTSCEEECCSSCEEEEC
T ss_pred             CCCCEEEcCCCCEEEEe
Confidence             565  65555554433

>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Thermoanaerobacterium [TaxId: 28895]

Probab=97.62  E-value=0.00011  Score=58.67  Aligned_cols=72  Identities=19%  Similarity=0.253  Sum_probs=51.6

Q ss_pred             ceEEEEEEec----CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEEc--
Q 015355          316 LEVVEIQYSG----DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVD--  383 (408)
Q Consensus       316 Lr~VTFtW~g----~AkeV~VaGSFN---NW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIVD--  383 (408)
                      ..+|+|....    .|+.|+|+|+..   +|++.  ++|.....        ....+.|++++.||+| .+||||++.  
T Consensus         5 ~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~--------~~~~~~W~~~v~lp~~~~~eYKyv~~~~   76 (105)
T d3bmva2           5 QICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQV--------VYQYPTWYYDVSVPAGTTIQFKFIKKNG   76 (105)
T ss_dssp             EEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSS--------SSCTTSEEEEEEEETTCEEEEEEEEESS
T ss_pred             EEEEEEEEcccccCCCCEEEEEeCcHHHCCCCHHHCcccccccc--------cCCCCeEEEEEEECCCCeEEEEEEEEcC
Confidence            3678898763    389999999974   99753  67875421        1235689999999999 599999973  


Q ss_pred             CE--eeeCCCCCee
Q 015355          384 GQ--WKVDPQRESV  395 (408)
Q Consensus       384 Ge--W~~DPd~Ptv  395 (408)
                      |.  |-..|+.-.+
T Consensus        77 ~~~~WE~g~NR~~~   90 (105)
T d3bmva2          77 NTITWEGGSNHTYT   90 (105)
T ss_dssp             SCCEECCSSCEEEE
T ss_pred             CeEEEcCCCCEEEE
Confidence            32  6665655443

>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=97.29  E-value=4.6e-05  Score=59.61  Aligned_cols=62  Identities=15%  Similarity=0.100  Sum_probs=48.1

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCE-eeeCCCCCe
Q 015355          318 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-WKVDPQRES  394 (408)
Q Consensus       318 ~VTFtW~g~-AkeV~VaGSFNNW~~~IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGe-W~~DPd~Pt  394 (408)
                      .|+|+..++ |+.|.|.|.+.+|   ++|.+.            ..|.|++.+. +.+| +.|+|.|||. ++.||-...
T Consensus        10 gv~FrvwAP~A~~V~l~~~~~~~---~~m~~~------------~~G~W~~~v~~~~~G-~~Y~y~v~~~~~~~DP~s~~   73 (90)
T d1eh9a1          10 EVIFTLWAPYQKSVKLKVLEKGL---YEMERD------------EKGYFTITLNNVKVR-DRYKYVLDDASEIPDPASRY   73 (90)
T ss_dssp             CEECCEECTTCSCCBCCCSSSCC---CCCCCC------------TTSEECCEESSCCSC-CEECEECTTSCEECCTTCSC
T ss_pred             CEEEEEECCCCCEEEEEeecCCc---ccceeC------------CCCEEEEEeCCCCCC-ceeEEEEeCCcCcCCccHhc
Confidence            378987676 9999999875443   688874            6799999994 7888 5699999875 677987654


Q ss_pred             e
Q 015355          395 V  395 (408)
Q Consensus       395 v  395 (408)
                      .
T Consensus        74 ~   74 (90)
T d1eh9a1          74 Q   74 (90)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=96.90  E-value=0.0011  Score=52.35  Aligned_cols=70  Identities=20%  Similarity=0.281  Sum_probs=46.3

Q ss_pred             EEEEEEec----CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEEEEE---cC
Q 015355          318 VVEIQYSG----DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG  384 (408)
Q Consensus       318 ~VTFtW~g----~AkeV~VaGSFN---NW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYKFIV---DG  384 (408)
                      .++|...+    .|+.|+|+|+..   +|+..  +.|...          ....+.|++.+.||+| .+||||+|   ||
T Consensus         4 ~~~~~v~~~~T~~Gq~v~vvGs~~eLG~W~~~ka~~l~~~----------~~~~~~W~~~v~lp~~~~~eYKyvi~~~~g   73 (99)
T d1vema1           4 MQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYY----------DSHSNDWRGNVVLPAERNIEFKAFIKSKDG   73 (99)
T ss_dssp             EEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEE----------ETTTTEEEEEEEEETTCCEEEEEEEECTTS
T ss_pred             eEEEEEeeeEcCCCCEEEEEeCcHHHCCCChhhheeeeec----------cCCCCCEEEEEEEcCCCcEEEEEEEEeCCC
Confidence            45555543    399999999986   99864  222111          1245689999999999 69999997   55


Q ss_pred             E---eeeCCCCCeecC
Q 015355          385 Q---WKVDPQRESVTK  397 (408)
Q Consensus       385 e---W~~DPd~PtvtD  397 (408)
                      .   |-..++.-...+
T Consensus        74 ~~~~WE~g~Nr~~~~p   89 (99)
T d1vema1          74 TVKSWQTIQQSWNPVP   89 (99)
T ss_dssp             CEEEECSSCEEESSCC
T ss_pred             CEEEecCCCCEEEECC
Confidence            3   555444433333

>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.38  E-value=0.011  Score=46.80  Aligned_cols=70  Identities=16%  Similarity=0.054  Sum_probs=45.0

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCeEEEEEE-eCCceEEEEEEEcCE--------
Q 015355          318 VVEIQYSGD-GEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ--------  385 (408)
Q Consensus       318 ~VTFtW~g~-AkeV~VaGSFNNW~~~--IpM~Kd~ss~~~a~~~sk~~GvFsitL~-LPPGrYEYKFIVDGe--------  385 (408)
                      -|.|+..++ |+.|.|.--..++...  ..|..+           ...|+|++.+. +.+|.+ |+|.|+|.        
T Consensus        18 g~~F~lwAP~A~~V~L~l~~~~~~~~~~~~~~~~-----------~~~GvW~~~i~~~~~G~~-Y~y~v~~~~~~~~~~~   85 (115)
T d2fhfa1          18 GVTFRVWAPTAQQVELVIYSADKKVIASHPMTRD-----------SASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVE   85 (115)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTCCEEEEEECEEC-----------TTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEE
T ss_pred             cEEEEEECCCCCEEEEEEECCCCCccceeeeeEc-----------CCCCEEEEEECCCCCCCE-EEEEEEcccccccCCc
Confidence            478976665 9999997443333322  234332           35789999985 788875 78887653        


Q ss_pred             --eeeCCCCCeecCCC
Q 015355          386 --WKVDPQRESVTKGG  399 (408)
Q Consensus       386 --W~~DPd~PtvtD~G  399 (408)
                        ...||-..-+..+|
T Consensus        86 ~~~~~DPYA~a~~~~~  101 (115)
T d2fhfa1          86 QYEVTDPYAHSLSTNS  101 (115)
T ss_dssp             EEEECCTTCSCBCGGG
T ss_pred             ceEecceeeEEEccCC
Confidence              34677776555333

>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Isoamylase, N-terminal domain N
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=94.65  E-value=0.024  Score=47.26  Aligned_cols=56  Identities=11%  Similarity=0.179  Sum_probs=41.9

Q ss_pred             EEEEEEec-CCceEEEEeeeCCCccc----cccCCCCCCCccccccccCCCeEEEEEE--------eCCceEEEEEEEcC
Q 015355          318 VVEIQYSG-DGEIVEVAGSFNGWHHR----IKMDPLPSSSIIEPIRSRKSRLWSTVLW--------LYPGTYEIKFIVDG  384 (408)
Q Consensus       318 ~VTFtW~g-~AkeV~VaGSFNNW~~~----IpM~Kd~ss~~~a~~~sk~~GvFsitL~--------LPPGrYEYKFIVDG  384 (408)
                      .|+|+... .|+.|.|.--..++...    ++|.+            +..|+|.+.+.        +.+|.| |.|.|||
T Consensus        17 ~v~F~vwAp~A~~V~L~ly~~~~~~~~~~~~~l~~------------~~~gvW~~~v~~~~~~~~g~~~G~~-Y~yrv~G   83 (162)
T d1bf2a1          17 NITFRVYSSQATRIVLYLYSAGYGVQESATYTLSP------------AGSGVWAVTVPVSSIKAAGITGAVY-YGYRAWG   83 (162)
T ss_dssp             EEEEEEECSSCSEEEEEEESSSSSCCCSEEEECEE------------CSTTEEEEEEEHHHHHHTTCCSCCE-EEEEEEB
T ss_pred             eEEEEEECCCCCEEEEEEEcCCCCCcceeEEEccc------------ccccEEEEEecccccccccCCCCcE-EEEEEcc
Confidence            47897555 49999999866666532    56665            36799999986        778865 8889998


Q ss_pred             Ee
Q 015355          385 QW  386 (408)
Q Consensus       385 eW  386 (408)
                      .|
T Consensus        84 p~   85 (162)
T d1bf2a1          84 PN   85 (162)
T ss_dssp             TT
T ss_pred             cc
Confidence            75

>d3c8da1 b.1.18.20 (A:6-150) Enterochelin esterase {Shigella flexneri 2a str. 2457T [TaxId: 198215]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Enterochelin esterase N-terminal domain-like
domain: Enterochelin esterase
species: Shigella flexneri 2a str. 2457T [TaxId: 198215]

Probab=83.03  E-value=3.3  Score=34.51  Aligned_cols=83  Identities=18%  Similarity=0.119  Sum_probs=55.7

Q ss_pred             cCCceEEEEEEecC--------CceEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCeEEEEEEeCCc-eEEEE
Q 015355          313 LSGLEVVEIQYSGD--------GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIK  379 (408)
Q Consensus       313 LsgLr~VTFtW~g~--------AkeV~VaGSFNNW~~----~IpM~Kd~ss~~~a~~~sk~~GvFsitL~LPPG-rYEYK  379 (408)
                      -.+.+.|||-|+++        ...|||-+.-....+    .-.|++.           ....+|..++.||.. +-.|.
T Consensus        19 ~~~~~~VTFlWR~~~~~~~~sa~~~Vyl~~n~vtDh~~~~~~~~m~rl-----------~gTDVW~~s~~vpad~rgsY~   87 (145)
T d3c8da1          19 NDEMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQSMQRI-----------AGTDVWQWTTQLNANWRGSYC   87 (145)
T ss_dssp             CSSEEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------CCBCEEC-----------TTSSEEEEEEEEETTCEEEEE
T ss_pred             CCCCEEEEEEEcCccccccccccceEEEecccccccccccChhhhhcC-----------CCCCeEEEEEEECcccEEEEE
Confidence            34568999999874        245999876644332    1347664           357899999999988 88999


Q ss_pred             EEE-c---------C------E-e-------eeCCCCCeec-C-CCccceEEE
Q 015355          380 FIV-D---------G------Q-W-------KVDPQRESVT-K-GGICNNILR  406 (408)
Q Consensus       380 FIV-D---------G------e-W-------~~DPd~Ptvt-D-~GnvNNVLe  406 (408)
                      ||. .         |      . |       +.||-||... . -|+--++++
T Consensus        88 fip~~~~~~~~~~~~~~~~~R~~wr~l~~~a~~DPlNp~~~~~~~g~~~S~l~  140 (145)
T d3c8da1          88 FIPTERDDIFSAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALE  140 (145)
T ss_dssp             EEEESCCSTTCCC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEE
T ss_pred             EEecCcccCCCcCCccHHHHHHHHHHhhhcccCCCCCCCCCcCCCCCcccccc
Confidence            984 1         1      1 2       5799999654 2 355556665